Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 255 of 295
Found at i:87826331 original size:16 final size:15
Alignment explanation
Indices: 87826302--87826364 Score: 64
Period size: 13 Copynumber: 4.5 Consensus size: 15
87826292 GTATGTATAT
*
87826302 AATAAAA-AAAAGA-
1 AATAAAATAATAGAG
87826315 AATAAAATAATAGAG
1 AATAAAATAATAGAG
87826330 AAT-AAA-AATAGTA-
1 AATAAAATAATAG-AG
*
87826343 AAGAAAATAATAGAG
1 AATAAAATAATAGAG
87826358 AATAAAA
1 AATAAAA
87826365 ATAGTAAAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
13 14 0.34
14 13 0.32
15 14 0.34
ACGTcount: A:0.73, C:0.00, G:0.11, T:0.16
Consensus pattern (15 bp):
AATAAAATAATAGAG
Found at i:87826334 original size:28 final size:29
Alignment explanation
Indices: 87826302--87826365 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 29
87826292 GTATGTATAT
*
87826302 AATAAAAAAAAG-AAATAAAATAATAGAG
1 AATAAAAAAAAGTAAAGAAAATAATAGAG
*
87826330 AAT-AAAAATAGTAAAGAAAATAATAGAG
1 AATAAAAAAAAGTAAAGAAAATAATAGAG
87826358 AATAAAAA
1 AATAAAAA
87826366 TAGTAAAACC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
27 7 0.22
28 21 0.66
29 4 0.12
ACGTcount: A:0.73, C:0.00, G:0.11, T:0.16
Consensus pattern (29 bp):
AATAAAAAAAAGTAAAGAAAATAATAGAG
Found at i:87826365 original size:16 final size:15
Alignment explanation
Indices: 87826302--87826367 Score: 54
Period size: 16 Copynumber: 4.7 Consensus size: 15
87826292 GTATGTATAT
87826302 AATAAAAA-AA-AGA
1 AATAAAAATAATAGA
87826315 AAT-AAAATAATAGA
1 AATAAAAATAATAGA
*
87826329 GAATAAAAATAGT--A
1 -AATAAAAATAATAGA
*
87826343 AA-GAAAATAATAGA
1 AATAAAAATAATAGA
87826357 GAATAAAAATA
1 -AATAAAAATA
87826368 GTAAAACCTT
Statistics
Matches: 41, Mismatches: 4, Indels: 13
0.71 0.07 0.22
Matches are distributed among these distances:
12 11 0.27
13 7 0.17
14 5 0.12
15 5 0.12
16 13 0.32
ACGTcount: A:0.73, C:0.00, G:0.11, T:0.17
Consensus pattern (15 bp):
AATAAAAATAATAGA
Found at i:87826366 original size:28 final size:28
Alignment explanation
Indices: 87826318--87826372 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
87826308 AAAAAGAAAT
87826318 AAAATAATAGAGAATAAAAATAGTAAAG
1 AAAATAATAGAGAATAAAAATAGTAAAG
87826346 AAAATAATAGAGAATAAAAATAGTAAA
1 AAAATAATAGAGAATAAAAATAGTAAA
87826373 ACCTTTGAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.69, C:0.00, G:0.13, T:0.18
Consensus pattern (28 bp):
AAAATAATAGAGAATAAAAATAGTAAAG
Found at i:87846346 original size:191 final size:191
Alignment explanation
Indices: 87846022--87846408 Score: 729
Period size: 191 Copynumber: 2.0 Consensus size: 191
87846012 ATAAGAGTGC
*
87846022 AAATGAATGAGTGATATTTATGAGAATAATTTCTATGACAAATTTGTGATGGTTATCATCCTGTT
1 AAATGAATGAGTGATATTTATGAGAATAATTTCTATGACAAATTTGTAATGGTTATCATCCTGTT
*
87846087 GCACAAAGACAGATTAGTACAATACCAGAGATCCGACTGTGAAAACCTACCAAAAATAGTGGAAA
66 GCACAAAGACAGATTAGTACAATACCAGAGATCCGACTGTGAAAACCCACCAAAAATAGTGGAAA
* *
87846152 TTGAGTAGAGGCTGAGTAAAATATTAAATGAAAGCTTATCAAGTCTAGTTTCAGATAAAGG
131 TTGAATAGAGGCTGAGTAAAATATTAAATGAAAGCTTATCAAATCTAGTTTCAGATAAAGG
87846213 AAATGAATGAGTGATATTTATGAGAATAATTTCTATGACAAATTTGTAATGGTTATCATCCTGTT
1 AAATGAATGAGTGATATTTATGAGAATAATTTCTATGACAAATTTGTAATGGTTATCATCCTGTT
87846278 GCACAAAGACAGATTAGTACAATACCAGAGATCCGACTGTGAAAACCCACCAAAAATAGTGGAAA
66 GCACAAAGACAGATTAGTACAATACCAGAGATCCGACTGTGAAAACCCACCAAAAATAGTGGAAA
*
87846343 TTGAATAGAGGTTGAGTAAAATATTAAATGAAAGCTTATCAAATCTAGTTTCAGATAAAGG
131 TTGAATAGAGGCTGAGTAAAATATTAAATGAAAGCTTATCAAATCTAGTTTCAGATAAAGG
87846404 AAATG
1 AAATG
87846409 GTGTAAGCAA
Statistics
Matches: 191, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
191 191 1.00
ACGTcount: A:0.41, C:0.12, G:0.19, T:0.28
Consensus pattern (191 bp):
AAATGAATGAGTGATATTTATGAGAATAATTTCTATGACAAATTTGTAATGGTTATCATCCTGTT
GCACAAAGACAGATTAGTACAATACCAGAGATCCGACTGTGAAAACCCACCAAAAATAGTGGAAA
TTGAATAGAGGCTGAGTAAAATATTAAATGAAAGCTTATCAAATCTAGTTTCAGATAAAGG
Found at i:87847666 original size:14 final size:14
Alignment explanation
Indices: 87847647--87847673 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
87847637 AGAGTTATAC
87847647 GGCCTGAGGACACG
1 GGCCTGAGGACACG
87847661 GGCCTGAGGACAC
1 GGCCTGAGGACAC
87847674 ACGAGCATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.30, G:0.41, T:0.07
Consensus pattern (14 bp):
GGCCTGAGGACACG
Found at i:87850081 original size:8 final size:8
Alignment explanation
Indices: 87850068--87850092 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
87850058 GTATAGGATT
87850068 TTTTGTTA
1 TTTTGTTA
87850076 TTTTGTTA
1 TTTTGTTA
87850084 TTTTGTTA
1 TTTTGTTA
87850092 T
1 T
87850093 ATGTGTCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.12, T:0.76
Consensus pattern (8 bp):
TTTTGTTA
Found at i:87854758 original size:25 final size:25
Alignment explanation
Indices: 87854727--87854793 Score: 68
Period size: 25 Copynumber: 2.7 Consensus size: 25
87854717 CTATTATTAT
87854727 TTTTTCTCTTCTCTTTCTCCTAC-C
1 TTTTTCTCTTCTCTTTCTCCTACTC
* *
87854751 TTCTTTCTC-TCTATTCTCTCCTTCTC
1 TT-TTTCTCTTCTCTT-TCTCCTACTC
*
87854777 TTTTTCT-TTTTCTTTCT
1 TTTTTCTCTTCTCTTTCT
87854794 TCTTTTTCCC
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
24 10 0.29
25 22 0.63
26 3 0.09
ACGTcount: A:0.03, C:0.33, G:0.00, T:0.64
Consensus pattern (25 bp):
TTTTTCTCTTCTCTTTCTCCTACTC
Found at i:87854943 original size:15 final size:15
Alignment explanation
Indices: 87854923--87854953 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
87854913 AATGGTCCCC
87854923 AAACAGAAAAAACCA
1 AAACAGAAAAAACCA
87854938 AAACAGAAAAAACCA
1 AAACAGAAAAAACCA
87854953 A
1 A
87854954 GGAGGTATGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.74, C:0.19, G:0.06, T:0.00
Consensus pattern (15 bp):
AAACAGAAAAAACCA
Found at i:87860023 original size:21 final size:21
Alignment explanation
Indices: 87859998--87860038 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
87859988 AACTTCACTA
* *
87859998 TTTATTTAAATTTAAATATAG
1 TTTATATAAATATAAATATAG
87860019 TTTATATAAATATAAATATA
1 TTTATATAAATATAAATATA
87860039 AAATAGTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
TTTATATAAATATAAATATAG
Found at i:87863339 original size:15 final size:15
Alignment explanation
Indices: 87863319--87863348 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
87863309 AAAGTGACAG
*
87863319 CGAAAGTGGGCACTT
1 CGAAAGTGGACACTT
87863334 CGAAAGTGGACACTT
1 CGAAAGTGGACACTT
87863349 TTGATGGCAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (15 bp):
CGAAAGTGGACACTT
Found at i:87863804 original size:15 final size:15
Alignment explanation
Indices: 87863784--87863816 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
87863774 TACAATATAC
87863784 TAATAAAGAACATAG
1 TAATAAAGAACATAG
*
87863799 TAATAAAGACCATAG
1 TAATAAAGAACATAG
87863814 TAA
1 TAA
87863817 AGTGGATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.58, C:0.09, G:0.12, T:0.21
Consensus pattern (15 bp):
TAATAAAGAACATAG
Found at i:87866622 original size:13 final size:13
Alignment explanation
Indices: 87866591--87866627 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
87866581 TAGTAAGATC
87866591 ATAC-TAAAAATA
1 ATACATAAAAATA
*
87866603 A-ACATAAAATTA
1 ATACATAAAAATA
87866615 ATACATAAAAATA
1 ATACATAAAAATA
87866628 TGTCATTCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
11 2 0.10
12 9 0.43
13 10 0.48
ACGTcount: A:0.68, C:0.08, G:0.00, T:0.24
Consensus pattern (13 bp):
ATACATAAAAATA
Found at i:87874838 original size:18 final size:20
Alignment explanation
Indices: 87874814--87874864 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 20
87874804 ATTAGATTTA
87874814 ATTAATTAAG-GATTAAAGT
1 ATTAATTAAGAGATTAAAGT
87874833 -TTAATTAAGCATGATTAAAGT
1 ATTAATTAAG-A-GATTAAAGT
87874854 AATTAATTAAG
1 -ATTAATTAAG
87874865 TTTAATCTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
18 9 0.33
21 9 0.33
23 9 0.33
ACGTcount: A:0.47, C:0.02, G:0.14, T:0.37
Consensus pattern (20 bp):
ATTAATTAAGAGATTAAAGT
Found at i:87879023 original size:17 final size:18
Alignment explanation
Indices: 87878989--87879024 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
87878979 CCAGTGATCT
*
87878989 GCCCGTGTGGGCCCATAC
1 GCCCGTGTGGGCCAATAC
87879007 GCCCGTGT-GGCCAATAC
1 GCCCGTGTGGGCCAATAC
87879024 G
1 G
87879025 ACCCAACTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.14, C:0.36, G:0.33, T:0.17
Consensus pattern (18 bp):
GCCCGTGTGGGCCAATAC
Found at i:87880947 original size:21 final size:21
Alignment explanation
Indices: 87880920--87881134 Score: 114
Period size: 21 Copynumber: 10.3 Consensus size: 21
87880910 GTGTTTTACT
*
87880920 TTCTGTTTAGCTCTTACGAGC
1 TTCTGTTTAACTCTTACGAGC
* * *
87880941 TTATGTTTAACTCTTAAGAGT
1 TTCTGTTTAACTCTTACGAGC
** * * *
87880962 TTCCATTCAGCTC-TATTGAGC
1 TTCTGTTTAACTCTTA-CGAGC
* * *
87880983 TTCTGTTCAACTCTTATGAGT
1 TTCTGTTTAACTCTTACGAGC
* * *
87881004 TTCTGTTTAACTCATACAAGT
1 TTCTGTTTAACTCTTACGAGC
*
87881025 TTCTGTTTAGCTCTTACGAGC
1 TTCTGTTTAACTCTTACGAGC
* * * *
87881046 TTCTGTTGAACACTTATGAGT
1 TTCTGTTTAACTCTTACGAGC
* * * ***
87881067 TTTTGTTCAGCTCTTGTAAGC
1 TTCTGTTTAACTCTTACGAGC
* *
87881088 TTCTGTTCAAGTCTTAAC-AGC
1 TTCTGTTTAACTCTT-ACGAGC
* *
87881109 TTCTG-TTCA-GCTTACGAGC
1 TTCTGTTTAACTCTTACGAGC
87881128 TTCTGTT
1 TTCTGTT
87881135 AACAATGTAC
Statistics
Matches: 146, Mismatches: 43, Indels: 11
0.73 0.22 0.05
Matches are distributed among these distances:
18 2 0.01
19 11 0.08
20 5 0.03
21 126 0.86
22 2 0.01
ACGTcount: A:0.20, C:0.20, G:0.16, T:0.44
Consensus pattern (21 bp):
TTCTGTTTAACTCTTACGAGC
Found at i:87881026 original size:63 final size:63
Alignment explanation
Indices: 87880920--87881073 Score: 159
Period size: 63 Copynumber: 2.4 Consensus size: 63
87880910 GTGTTTTACT
* * * * * *
87880920 TTCTGTTTAGCTCTTACGAGCTTATGTTTAACTCTTAAGAGTTTCCATTCAGCTC-TATTGAGC
1 TTCTGTTCAACTCTTATGAGTTTATGTTTAACTCATAAGAGTTTCCATTCAGCTCTTA-CGAGC
* ** *
87880983 TTCTGTTCAACTCTTATGAGTTTCTGTTTAACTCATACA-AGTTTCTGTTTAGCTCTTACGAGC
1 TTCTGTTCAACTCTTATGAGTTTATGTTTAACTCATA-AGAGTTTCCATTCAGCTCTTACGAGC
* * *
87881046 TTCTGTTGAACACTTATGAGTTTTTGTT
1 TTCTGTTCAACTCTTATGAGTTTATGTT
87881074 CAGCTCTTGT
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
63 73 0.96
64 3 0.04
ACGTcount: A:0.20, C:0.19, G:0.16, T:0.45
Consensus pattern (63 bp):
TTCTGTTCAACTCTTATGAGTTTATGTTTAACTCATAAGAGTTTCCATTCAGCTCTTACGAGC
Found at i:87881092 original size:63 final size:64
Alignment explanation
Indices: 87880979--87881117 Score: 158
Period size: 63 Copynumber: 2.2 Consensus size: 64
87880969 CAGCTCTATT
* * * *
87880979 GAGCTTCTGTTCAACTCTTATGAGTTTCTGTTTAACTCATACAAGTTTCTGTT-TAGCTCTT-AC
1 GAGCTTCTGTTCAACACTTATGAGTTTCTGTTCAACTCATACAAGCTTCTGTTCAAG-TCTTAAC
* * * * **
87881042 GAGCTTCTGTTGAACACTTATGAGTTTTTGTTCAGCTCTTGTAAGCTTCTGTTCAAGTCTTAAC
1 GAGCTTCTGTTCAACACTTATGAGTTTCTGTTCAACTCATACAAGCTTCTGTTCAAGTCTTAAC
87881106 -AGCTTCTGTTCA
1 GAGCTTCTGTTCA
87881118 GCTTACGAGC
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
63 59 0.94
64 4 0.06
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.43
Consensus pattern (64 bp):
GAGCTTCTGTTCAACACTTATGAGTTTCTGTTCAACTCATACAAGCTTCTGTTCAAGTCTTAAC
Found at i:87881128 original size:19 final size:21
Alignment explanation
Indices: 87881085--87881134 Score: 70
Period size: 19 Copynumber: 2.5 Consensus size: 21
87881075 AGCTCTTGTA
87881085 AGCTTCTGTTCAAGTCTTAAC
1 AGCTTCTGTTCAAGTCTTAAC
87881106 AGCTTCTGTTC-AG-CTT-AC
1 AGCTTCTGTTCAAGTCTTAAC
87881124 GAGCTTCTGTT
1 -AGCTTCTGTT
87881135 AACAATGTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
18 2 0.07
19 13 0.46
20 2 0.07
21 11 0.39
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.40
Consensus pattern (21 bp):
AGCTTCTGTTCAAGTCTTAAC
Found at i:87882848 original size:25 final size:25
Alignment explanation
Indices: 87882814--87882869 Score: 94
Period size: 25 Copynumber: 2.2 Consensus size: 25
87882804 TATACACATA
87882814 GTAAGCTATCATAGCTTAGTAAGTC
1 GTAAGCTATCATAGCTTAGTAAGTC
*
87882839 GTAAGCTATCATAGCTTAGTAGGTC
1 GTAAGCTATCATAGCTTAGTAAGTC
*
87882864 ATAAGC
1 GTAAGC
87882870 AAATAAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.30
Consensus pattern (25 bp):
GTAAGCTATCATAGCTTAGTAAGTC
Found at i:87883497 original size:41 final size:44
Alignment explanation
Indices: 87883443--87883562 Score: 124
Period size: 44 Copynumber: 2.8 Consensus size: 44
87883433 TACCACTATT
* * *
87883443 CCAGACA-GAGTCTTACACGAATCA-A-ATA-CGATGTCGATGTC
1 CCAGACATG-GTCTTACACGAACCACATATATCGAGGTCAATGTC
87883484 CCAGACATGGTCTTA-ACGTAACCACATATATCGAGGTCAATGTC
1 CCAGACATGGTCTTACACG-AACCACATATATCGAGGTCAATGTC
* * *
87883528 TCAGACATGGTCTTACACGAGAACATATATATCGA
1 CCAGACATGGTCTTACACGA-ACCACATATATCGA
87883563 AAATCCTATG
Statistics
Matches: 66, Mismatches: 6, Indels: 10
0.80 0.07 0.12
Matches are distributed among these distances:
40 3 0.05
41 17 0.26
42 2 0.03
43 3 0.05
44 26 0.39
45 15 0.23
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.24
Consensus pattern (44 bp):
CCAGACATGGTCTTACACGAACCACATATATCGAGGTCAATGTC
Found at i:87890361 original size:21 final size:21
Alignment explanation
Indices: 87890337--87890376 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
87890327 ATGGTGTGCA
87890337 TGAGGTCTAAGGTTCAATTCG
1 TGAGGTCTAAGGTTCAATTCG
87890358 TGAGGTCTAAGGTTCAATT
1 TGAGGTCTAAGGTTCAATT
87890377 TGTGGAATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.25, C:0.12, G:0.28, T:0.35
Consensus pattern (21 bp):
TGAGGTCTAAGGTTCAATTCG
Found at i:87891975 original size:27 final size:27
Alignment explanation
Indices: 87891891--87892036 Score: 165
Period size: 27 Copynumber: 5.5 Consensus size: 27
87891881 AGACCCCGAT
* * *
87891891 TTGTAAAATTATCGAGATACCC-CAGT
1 TTGTAAAATTATCAAAATACCCTCAGA
*
87891917 TTGTAAAA-TATCAAAATACCC-CCGAA
1 TTGTAAAATTATCAAAATACCCTCAG-A
* **
87891943 TTGTAAAATTGTTGAAATACCCTCAG-
1 TTGTAAAATTATCAAAATACCCTCAGA
* *
87891969 TTCGTAAAATTACCAAAATACCCTCGGA
1 TT-GTAAAATTATCAAAATACCCTCAGA
87891997 TTGTAAAATTATCAAAATACCCTCAGA
1 TTGTAAAATTATCAAAATACCCTCAGA
87892024 TTGTAAAATTATC
1 TTGTAAAATTATC
87892037 CCAAATATCC
Statistics
Matches: 100, Mismatches: 15, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
25 13 0.13
26 18 0.18
27 65 0.65
28 4 0.04
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.30
Consensus pattern (27 bp):
TTGTAAAATTATCAAAATACCCTCAGA
Found at i:87892001 original size:54 final size:53
Alignment explanation
Indices: 87891883--87892048 Score: 185
Period size: 54 Copynumber: 3.1 Consensus size: 53
87891873 GGTCATTAAG
* * *
87891883 ACCC-CGATTTGTAAAATTATCGAGATACCC-CAGTTTGTAAAA-TATCAAAAT
1 ACCCTCGAATTGTAAAATTATCGAAATACCCTCAG-TTGTAAAATTACCAAAAT
* * *
87891934 ACCCCCGAATTGTAAAATTGTTGAAATACCCTCAGTTCGTAAAATTACCAAAAT
1 ACCCTCGAATTGTAAAATTATCGAAATACCCTCAGTT-GTAAAATTACCAAAAT
* * *
87891988 ACCCTCGGATTGTAAAATTATCAAAATACCCTCAGATTGTAAAATTATCCCAAAT
1 ACCCTCGAATTGTAAAATTATCGAAATACCCTCAG-TTGTAAAATTA-CCAAAAT
87892043 ATCCCT
1 A-CCCT
87892049 GTAGTGTAAA
Statistics
Matches: 97, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
51 4 0.04
52 24 0.25
53 9 0.09
54 47 0.48
55 9 0.09
56 4 0.04
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (53 bp):
ACCCTCGAATTGTAAAATTATCGAAATACCCTCAGTTGTAAAATTACCAAAAT
Found at i:87892086 original size:27 final size:28
Alignment explanation
Indices: 87892026--87892086 Score: 90
Period size: 26 Copynumber: 2.2 Consensus size: 28
87892016 CCCTCAGATT
* *
87892026 GTAAAATTATCCCAAATATCCCTGTAGT
1 GTAAAATTATCCCAAATACCCCTGTAGG
87892054 GT-AAATT-TCCCAAATACCCCTGTAGG
1 GTAAAATTATCCCAAATACCCCTGTAGG
87892080 GTAAAAT
1 GTAAAAT
87892087 GAATGTTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
26 19 0.63
27 9 0.30
28 2 0.07
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.30
Consensus pattern (28 bp):
GTAAAATTATCCCAAATACCCCTGTAGG
Found at i:87895331 original size:18 final size:17
Alignment explanation
Indices: 87895297--87895344 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
87895287 GGCCCAGAAT
87895297 CCCACACGCCCATGTGGG
1 CCCACACGCCCATGT-GG
*
87895315 CCCACGCGCCCGA-GTGG
1 CCCACACGCCC-ATGTGG
87895332 CCCACACGACCCA
1 CCCACACG-CCCA
87895345 AAAGGTCGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 10 0.38
18 15 0.58
19 1 0.04
ACGTcount: A:0.19, C:0.50, G:0.25, T:0.06
Consensus pattern (17 bp):
CCCACACGCCCATGTGG
Found at i:87899717 original size:7 final size:6
Alignment explanation
Indices: 87899679--87899739 Score: 65
Period size: 6 Copynumber: 10.5 Consensus size: 6
87899669 AAAGTCTAGG
* * *
87899679 AAAATA CAAATA AAAATT AATATA AAAATA AAAACTA AAAAT- AAAAT-
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAA-TA AAAATA AAAATA
87899726 AAAAT- AAAATA AAA
1 AAAATA AAAATA AAA
87899740 TGGACTCAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
5 15 0.32
6 26 0.55
7 6 0.13
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (6 bp):
AAAATA
Found at i:87899724 original size:5 final size:5
Alignment explanation
Indices: 87899679--87899740 Score: 52
Period size: 5 Copynumber: 11.0 Consensus size: 5
87899669 AAAGTCTAGG
*
87899679 AAAAT ACAAAT AAAAATT AATAT AAAAAT AAAAACT AAAAAT AAAAT AAAAT
1 AAAAT A-AAAT -AAAA-T AAAAT -AAAAT -AAAA-T -AAAAT AAAAT AAAAT
87899731 AAAAT AAAAT
1 AAAAT AAAAT
87899741 GGACTCAATG
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
5 22 0.44
6 20 0.40
7 8 0.16
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:87906460 original size:43 final size:42
Alignment explanation
Indices: 87906413--87906526 Score: 115
Period size: 42 Copynumber: 2.7 Consensus size: 42
87906403 CCAAACGTGA
* *
87906413 TCTTACATGTAATCAAATATCGATGCCACTATCCTAAACAGGG
1 TCTTACACGTAATCAAATATCGATGCCA-TATCCTAAACAGAG
* * * * *
87906456 TCTTACACGAAATCATATA-CGATGTCGATGTCCTAAACATAG
1 TCTTACACGTAATCAAATATCGATG-CCATATCCTAAACAGAG
87906498 TCTTACACGTAAATCTAAA-ATCGATGCCA
1 TCTTACACGT-AATC-AAATATCGATGCCA
87906527 ACATCCCAGA
Statistics
Matches: 57, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
42 25 0.44
43 25 0.44
44 7 0.12
ACGTcount: A:0.36, C:0.23, G:0.13, T:0.28
Consensus pattern (42 bp):
TCTTACACGTAATCAAATATCGATGCCATATCCTAAACAGAG
Found at i:87914297 original size:13 final size:13
Alignment explanation
Indices: 87914279--87914311 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
87914269 TCGATATCTC
87914279 AATTTCAATTCAT
1 AATTTCAATTCAT
87914292 AATTTCAATTCAT
1 AATTTCAATTCAT
87914305 AATTTCA
1 AATTTCA
87914312 CTTTCTCATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.45
Consensus pattern (13 bp):
AATTTCAATTCAT
Found at i:87914368 original size:13 final size:13
Alignment explanation
Indices: 87914347--87914383 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
87914337 TCGATTAAAT
87914347 TCATTTGATTTTC
1 TCATTTGATTTTC
*
87914360 TCTTTTGATTTTC
1 TCATTTGATTTTC
87914373 TCATTTGATTT
1 TCATTTGATTT
87914384 ATTCAACTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.14, C:0.14, G:0.08, T:0.65
Consensus pattern (13 bp):
TCATTTGATTTTC
Found at i:87914757 original size:23 final size:22
Alignment explanation
Indices: 87914673--87914755 Score: 98
Period size: 21 Copynumber: 3.8 Consensus size: 22
87914663 GAAGCAGTAC
87914673 ACGACACATAAAGTGCCTAAA-
1 ACGACACATAAAGTGCCTAAAT
** *
87914694 ACGACACAGGAGGTGCCT-AAT
1 ACGACACATAAAGTGCCTAAAT
* *
87914715 ACGACACACAAGGTGCCTGAAAT
1 ACGACACATAAAGTGCCT-AAAT
87914738 ACGACACATAAAGTGCCT
1 ACGACACATAAAGTGCCT
87914756 GATCGGCAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
20 2 0.04
21 31 0.60
23 19 0.37
ACGTcount: A:0.40, C:0.25, G:0.20, T:0.14
Consensus pattern (22 bp):
ACGACACATAAAGTGCCTAAAT
Found at i:87914875 original size:17 final size:18
Alignment explanation
Indices: 87914843--87914876 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
87914833 TAATAAGGTA
87914843 TTTTAATTCTCAATTCAC
1 TTTTAATTCTCAATTCAC
*
87914861 TTTTATTTC-CAATTCA
1 TTTTAATTCTCAATTCA
87914877 AGATCACTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.26, C:0.21, G:0.00, T:0.53
Consensus pattern (18 bp):
TTTTAATTCTCAATTCAC
Found at i:87916738 original size:3 final size:3
Alignment explanation
Indices: 87916663--87916718 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
87916653 AATAAGATTA
87916663 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
87916711 AAC AAC AA
1 AAC AAC AA
87916719 TAATAATAAT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:87921283 original size:21 final size:20
Alignment explanation
Indices: 87921257--87921296 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
87921247 GTCATAATGG
*
87921257 CCACACGGGTGTGTTGCCCTT
1 CCACACGGGCGTG-TGCCCTT
87921278 CCACACGGGCGTGTGCCCT
1 CCACACGGGCGTGTGCCCT
87921297 ACTTCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.38, G:0.30, T:0.23
Consensus pattern (20 bp):
CCACACGGGCGTGTGCCCTT
Found at i:87927562 original size:25 final size:24
Alignment explanation
Indices: 87927476--87927539 Score: 101
Period size: 24 Copynumber: 2.7 Consensus size: 24
87927466 AAGGCTATGC
** *
87927476 GGCACTATGTGTGCGAGATTACAT
1 GGCACTATGTGTGCGAGAAAACGT
87927500 GGCACTATGTGTGCGAGAAAACGT
1 GGCACTATGTGTGCGAGAAAACGT
87927524 GGCACTATGTGTGCGA
1 GGCACTATGTGTGCGA
87927540 ATAAGTAAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.25, C:0.17, G:0.33, T:0.25
Consensus pattern (24 bp):
GGCACTATGTGTGCGAGAAAACGT
Found at i:87930771 original size:22 final size:22
Alignment explanation
Indices: 87930743--87930864 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
87930733 TTCCACATCC
87930743 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
87930765 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
87930789 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
87930812 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
87930836 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
87930859 ATCACA
1 ATCACA
87930865 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:87930778 original size:47 final size:47
Alignment explanation
Indices: 87930715--87931220 Score: 709
Period size: 47 Copynumber: 10.6 Consensus size: 47
87930705 CCCTTCGGGA
* * *
87930715 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
87930762 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
87930809 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
87930856 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
87930903 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
87930950 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
87930997 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
87931044 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
87931093 CTTATCACATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
87931140 CTTATCACATATATATACACT-TTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
87931189 CTTATCACATATATATACACT-TTCACATTCAT
1 CTTATCAC--ATATATACA-TGTTCACATTCAT
87931221 TCAAATATAC
Statistics
Matches: 432, Mismatches: 21, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 316 0.73
49 114 0.26
50 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:87932495 original size:56 final size:56
Alignment explanation
Indices: 87932428--87932545 Score: 218
Period size: 56 Copynumber: 2.1 Consensus size: 56
87932418 TTAGTTTATG
*
87932428 GCCCATGCTTCTTATTTTATTCTTCCATTAACACAACGTGTTTCATGACATGTTTT
1 GCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTTT
*
87932484 GCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTTTT
1 GCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTTT
87932540 GCCCAT
1 GCCCAT
87932546 CATCCCTTGT
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 60 1.00
ACGTcount: A:0.22, C:0.24, G:0.10, T:0.44
Consensus pattern (56 bp):
GCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTTT
Found at i:87934534 original size:49 final size:50
Alignment explanation
Indices: 87934430--87934607 Score: 177
Period size: 49 Copynumber: 3.6 Consensus size: 50
87934420 GACGAGAGCT
* * * * * **
87934430 AGTGTAAGACATGTCTAGGACAT-GCATCGGC-CTCAAAATAT-ACAAGTT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACTCAATAGATGA-AAGCC
*
87934478 AGTGTAAGACCTGTCTGGGACATGGCATCGACAC-CAATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACTCAATAGATGAAAGCC
* * * * *
87934527 AGTGTAAGACCTGTCTAGGACATGGCATCG-CCCTCGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACACTCAATAGATGAAAGCC
* *
87934576 ACTGTAAGACCTGTCTGGAACATGGCATCGAC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGAC
87934608 TTTAATGTGC
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
48 23 0.21
49 82 0.76
50 3 0.03
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (50 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACACTCAATAGATGAAAGCC
Found at i:87934547 original size:97 final size:98
Alignment explanation
Indices: 87934423--87934607 Score: 275
Period size: 98 Copynumber: 1.9 Consensus size: 98
87934413 ACATTGAGAC
* * * *
87934423 GAGAGCTAGTGTAAGACATGTCTAGGACAT-GCATCGGCCTCAAAATAT-ACAAGTTAGTGTAAG
1 GAGAGCCAGTGTAAGACATGTCTAGGACATGGCATCGCCCTCAAAATATGA-AAGTCACTGTAAG
*
87934486 ACCTGTCTGGGACATGGCATCGACACCAATAGAT
65 ACCTGTCTGGAACATGGCATCGACACCAATAGAT
* * *
87934520 GAGAGCCAGTGTAAGACCTGTCTAGGACATGGCATCGCCCTCGATATATGAAAGTCACTGTAAGA
1 GAGAGCCAGTGTAAGACATGTCTAGGACATGGCATCGCCCTCAAAATATGAAAGTCACTGTAAGA
87934585 CCTGTCTGGAACATGGCATCGAC
66 CCTGTCTGGAACATGGCATCGAC
87934608 TTTAATGTGC
Statistics
Matches: 78, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
97 28 0.36
98 49 0.63
99 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (98 bp):
GAGAGCCAGTGTAAGACATGTCTAGGACATGGCATCGCCCTCAAAATATGAAAGTCACTGTAAGA
CCTGTCTGGAACATGGCATCGACACCAATAGAT
Found at i:87936364 original size:47 final size:45
Alignment explanation
Indices: 87936256--87936518 Score: 203
Period size: 46 Copynumber: 5.6 Consensus size: 45
87936246 TGTGCGAGAT
87936256 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATT-ATGAG--AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG---CATTGA-GAGAAAGCC
* *
87936302 AGTGTAAGACTATGTCTGGGGCATGGCATCGGCATTGAGACGAAAGCT
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCATTGAGA-GAAAGCC
* * * *
87936350 AGTGTAAGACATGTCTGGGGCATGCATCGACCTTAAGACGAAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGA-GAAAGCC
* * * * * *
87936396 AGTGTAATACGTGTCTGGAACATGCATCGG-TTATGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCAT-TGAGA-GAAAGCC
* * * * *
87936442 AGAGTAAGACCATGTCTGGGACATGGCATTGAC-TTGAGATATGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGAGAGA-AAGCC
87936489 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
87936519 AGCAGCTTAC
Statistics
Matches: 179, Mismatches: 27, Indels: 21
0.79 0.12 0.09
Matches are distributed among these distances:
45 7 0.04
46 73 0.41
47 73 0.41
48 26 0.15
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGAGAAAGCC
Found at i:87936392 original size:46 final size:46
Alignment explanation
Indices: 87936256--87936518 Score: 201
Period size: 47 Copynumber: 5.6 Consensus size: 46
87936246 TGTGCGAGAT
** ** * *
87936256 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTAAGACGAAAGCC
* * * *
87936302 AGTGTAAGACTATGTCTGGGGCATGGCATCGGCATTGAGACGAAAGCT
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCCTTAAGACGAAAGCC
* *
87936350 AGTGTAAGACATGTCTGGGGCATGCATCGACCTTAAGACGAAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTAAGACGAAAGCC
* * * * * *
87936396 AGTGTAATACGTGTCTGGAACATGCATCGG--TTATGAGATGATAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTTA--AGACGAAAGCC
* * * * * *
87936442 AGAGTAAGACCATGTCTGGGACATGGCAT-TGACTTGAGA-TATGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTTAAGACGA-AAGCC
87936489 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATC
87936519 AGCAGCTTAC
Statistics
Matches: 175, Mismatches: 32, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
44 3 0.02
46 70 0.40
47 72 0.41
48 28 0.16
49 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTTAAGACGAAAGCC
Found at i:87940498 original size:26 final size:27
Alignment explanation
Indices: 87940454--87940517 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 27
87940444 AACGTAGCTG
* **
87940454 CCAGTAGCAGTAAGTGTGACA-AGCCA
1 CCAGTAGTAGTAAACGTGACATAGCCA
*
87940480 CCAGTAGTAGTAAACGTGACATAGTCA
1 CCAGTAGTAGTAAACGTGACATAGCCA
*
87940507 CCAATA-TAGTA
1 CCAGTAGTAGTA
87940518 CTTCCTCCAT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 23 0.72
27 9 0.28
ACGTcount: A:0.38, C:0.20, G:0.22, T:0.20
Consensus pattern (27 bp):
CCAGTAGTAGTAAACGTGACATAGCCA
Found at i:87947919 original size:46 final size:47
Alignment explanation
Indices: 87947810--87948030 Score: 177
Period size: 46 Copynumber: 4.7 Consensus size: 47
87947800 CTGCCACATT
* * * *
87947810 ATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAG
1 ATGA-AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAG
*
87947858 ATGAAAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAG
1 ATG-AAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAG
* * ** * *
87947904 ACGTAAGCCAGTGTAA-AACATGTCTAAGACAT-GCATTGG-CTACAAG
1 ATG-AAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAG
* * *
87947950 ATGATAGTCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAG
1 ATGA-AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAG
* * *
87947997 AT-ATGAGCCAATATAAGACCATGTTTGGGACATG
1 ATGA--AGCCAGTGTAAGACCATGTCTGGGACATG
87948031 TCATTGGTAG
Statistics
Matches: 142, Mismatches: 23, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
45 4 0.03
46 58 0.41
47 57 0.40
48 22 0.15
49 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.24
Consensus pattern (47 bp):
ATGAAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAG
Found at i:87948014 original size:47 final size:48
Alignment explanation
Indices: 87947819--87948030 Score: 197
Period size: 47 Copynumber: 4.5 Consensus size: 48
87947809 TATGAGAGCT
* *
87947819 AGTGTAAGACCATGTCTGGGACATGGCATCGACATTGAGATGA-AAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TCGAGATGATAAGCC
* *
87947867 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACG-TAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATC-GACTCGAGATGATAAGCC
* ** * * * *
87947913 AGTGTAA-AACATGTCTAAGACAT-GCATTGGCTACAAGATGAT-AGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACT-CGAGATGATAAGCC
* *
87947959 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGAT-ATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGATGATAAGCC
* * *
87948006 AATATAAGACCATGTTTGGGACATG
1 AGTGTAAGACCATGTCTGGGACATG
87948031 TCATTGGTAG
Statistics
Matches: 134, Mismatches: 22, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
45 4 0.03
46 55 0.41
47 59 0.44
48 16 0.12
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACTCGAGATGATAAGCC
Found at i:87954293 original size:27 final size:27
Alignment explanation
Indices: 87954262--87954404 Score: 110
Period size: 27 Copynumber: 5.3 Consensus size: 27
87954252 TTAGTTTACC
* *
87954262 AAATTACTGAAATACCCTTAACTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
* * * *
87954289 AAATTAC-CAAAGTACCCCCGATTTATA
1 AAATTACTGAAA-TACCCTCAATTTGTA
* * **
87954316 AAATTA-TCCAAATATCCTTGATTTGTA
1 AAATTACT-GAAATACCCTCAATTTGTA
* *
87954343 AAATTACAGAAATACCCTCAGTTTGTA
1 AAATTACTGAAATACCCTCAATTTGTA
* * *
87954370 AAATTATTGAAATACCCTCGATTTATA
1 AAATTACTGAAATACCCTCAATTTGTA
*
87954397 GAATTACT
1 AAATTACT
87954405 ATTTTTACCC
Statistics
Matches: 89, Mismatches: 23, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
26 3 0.03
27 82 0.92
28 4 0.04
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.34
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCAATTTGTA
Found at i:87954359 original size:54 final size:53
Alignment explanation
Indices: 87954284--87954403 Score: 125
Period size: 54 Copynumber: 2.2 Consensus size: 53
87954274 TACCCTTAAC
* * *
87954284 TTGTAAAATTACCAAAGTACCCCC-GATTTATAAAATTATCCAAATATCCTTGAT
1 TTGTAAAATTA-CAAAATACCCCCAG-TTTATAAAATTATCCAAATACCCTCGAT
* * **
87954338 TTGTAAAATTACAGAAATACCCTCAGTTTGTAAAATTATTGAAATACCCTCGAT
1 TTGTAAAATTACA-AAATACCCCCAGTTTATAAAATTATCCAAATACCCTCGAT
* *
87954392 TTATAGAATTAC
1 TTGTAAAATTAC
87954404 TATTTTTACC
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
53 2 0.04
54 52 0.95
55 1 0.02
ACGTcount: A:0.39, C:0.17, G:0.09, T:0.34
Consensus pattern (53 bp):
TTGTAAAATTACAAAATACCCCCAGTTTATAAAATTATCCAAATACCCTCGAT
Found at i:87954445 original size:27 final size:27
Alignment explanation
Indices: 87954382--87954578 Score: 304
Period size: 27 Copynumber: 7.3 Consensus size: 27
87954372 ATTATTGAAA
*
87954382 TACCCTCGATTTATAGAATTACTATTTT
1 TACCCTCGATTTATAGAATTACCA-TTT
* *
87954410 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
87954437 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
87954464 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
*
87954491 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
87954518 TACCCTCGATTTATAGAATTACCATCT
1 TACCCTCGATTTATAGAATTACCATTT
*
87954545 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
87954572 TACCCTC
1 TACCCTC
87954579 AATGTAAAAA
Statistics
Matches: 153, Mismatches: 16, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
27 132 0.86
28 21 0.14
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:87954593 original size:54 final size:54
Alignment explanation
Indices: 87954382--87954578 Score: 340
Period size: 54 Copynumber: 3.6 Consensus size: 54
87954372 ATTATTGAAA
87954382 TACCCTCGATTTATAGAATTACTATTTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTA-TTTTACCCTCGATTTACAGAATTACCGTTT
87954437 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* * *
87954491 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTACCATCT
1 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* *
87954545 TACCCTCGATTTACAGAATTACCATTTTACCCTC
1 TACCCTCGATTTATAGAATTACTATTTTACCCTC
87954579 AATGTAAAAA
Statistics
Matches: 137, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
54 113 0.82
55 24 0.18
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:87954602 original size:27 final size:27
Alignment explanation
Indices: 87954572--87954631 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
87954562 ATTACCATTT
*
87954572 TACCCTCAATGTAAAAAATTACTAAAA
1 TACCCTCAATGTAAAAAATTACCAAAA
*** * *
87954599 TACCCTTGGTTTACAAAATTACCAAAA
1 TACCCTCAATGTAAAAAATTACCAAAA
87954626 TACCCT
1 TACCCT
87954632 TGATCAATAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.43, C:0.23, G:0.05, T:0.28
Consensus pattern (27 bp):
TACCCTCAATGTAAAAAATTACCAAAA
Found at i:87954612 original size:54 final size:54
Alignment explanation
Indices: 87954379--87954622 Score: 182
Period size: 54 Copynumber: 4.5 Consensus size: 54
87954369 AAAATTATTG
* * * * * * *
87954379 AAATACCCTCGATTTATAGAATTACTATTTTTACCCTCGATTTACAGAATTACCG
1 AAATACCCTCGATTTACAGAATTACCA-TTTTACCCTCAATGTAAAAAATTACCA
*** * * * * * * *
87954434 TTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAGAATTACCG
1 AAATACCCTCGATTTACAGAATTACCATTTTACCCTCAATGTAAAAAATTACCA
*** * * * * * *
87954488 TTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTATAGAATTACCA
1 AAATACCCTCGATTTACAGAATTACCATTTTACCCTCAATGTAAAAAATTACCA
*** *
87954542 TCTTACCCTCGATTTACAGAATTACCATTTTACCCTCAATGTAAAAAATTACTA
1 AAATACCCTCGATTTACAGAATTACCATTTTACCCTCAATGTAAAAAATTACCA
* * *
87954596 AAATACCCTTGGTTTACAAAATTACCA
1 AAATACCCTCGATTTACAGAATTACCA
87954623 AAATACCCTT
Statistics
Matches: 170, Mismatches: 19, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
54 146 0.86
55 24 0.14
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.38
Consensus pattern (54 bp):
AAATACCCTCGATTTACAGAATTACCATTTTACCCTCAATGTAAAAAATTACCA
Found at i:87954619 original size:81 final size:81
Alignment explanation
Indices: 87954382--87954622 Score: 230
Period size: 81 Copynumber: 3.0 Consensus size: 81
87954372 ATTATTGAAA
* * * * * * *****
87954382 TACCCTCGATTTATAGAATTACTATTTTTACCCTCGATTTACAGAATTACCGTTTTACCCTCGAT
1 TACCCTCGATTTACAGAATTACCA-TTTTACCCTCAATGTAAAAAATTACTAAAATACCCTCGAT
* * * *
87954447 TTATAGAATTACTATTT
65 TTACAAAATTACCATCT
* * * * * ***
87954464 TACCCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCAATGTAAAAAATTACTAAAATACCCTCGATT
* *
87954529 TATAGAATTACCATCT
66 TACAAAATTACCATCT
* *
87954545 TACCCTCGATTTACAGAATTACCATTTTACCCTCAATGTAAAAAATTACTAAAATACCCTTGGTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCAATGTAAAAAATTACTAAAATACCCTCGATT
87954610 TACAAAATTACCA
66 TACAAAATTACCA
87954623 AAATACCCTT
Statistics
Matches: 139, Mismatches: 20, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
81 118 0.85
82 21 0.15
ACGTcount: A:0.32, C:0.22, G:0.08, T:0.38
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCAATGTAAAAAATTACTAAAATACCCTCGATT
TACAAAATTACCATCT
Found at i:87954630 original size:54 final size:54
Alignment explanation
Indices: 87954545--87954684 Score: 138
Period size: 54 Copynumber: 2.6 Consensus size: 54
87954535 ATTACCATCT
* * * *** * *
87954545 TACCCTCGATTTACAGAATTACCATTTTACCCTCAATGTAA-AAAATTACTAAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTCAAT-CAATAAAATTACCAAAA
** *
87954599 TACCCTTGGTTTACAAAATTACCAAAATACCCTTGATCAATAAAGTTACCAAAA
1 TACCCTTGGTTTACAAAATTACCAAAATACCCTCAATCAATAAAATTACCAAAA
* **
87954653 TACCATTGGTTTGTAAAATTACCAAAATACCC
1 TACCCTTGGTTTACAAAATTACCAAAATACCC
87954685 CTACTTTATG
Statistics
Matches: 71, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
53 2 0.03
54 69 0.97
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (54 bp):
TACCCTTGGTTTACAAAATTACCAAAATACCCTCAATCAATAAAATTACCAAAA
Found at i:87954632 original size:27 final size:27
Alignment explanation
Indices: 87954586--87954714 Score: 132
Period size: 27 Copynumber: 4.8 Consensus size: 27
87954576 CTCAATGTAA
* *
87954586 AAAATTACTAAAATACCCTTGGTTTAC
1 AAAATTACCAAAATACCCTTGGTTTAT
* **
87954613 AAAATTACCAAAATACCCTTGATCAAT
1 AAAATTACCAAAATACCCTTGGTTTAT
* * *
87954640 AAAGTTACCAAAATACCATTGGTTTGT
1 AAAATTACCAAAATACCCTTGGTTTAT
* **
87954667 AAAATTACCAAAATACCCCTACTTTAT
1 AAAATTACCAAAATACCCTTGGTTTAT
** *
87954694 GTAATTACCGAAATACCCTTG
1 AAAATTACCAAAATACCCTTG
87954715 TAGGGTAGAA
Statistics
Matches: 80, Mismatches: 22, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTTGGTTTAT
Found at i:87954726 original size:27 final size:27
Alignment explanation
Indices: 87954696--87954891 Score: 302
Period size: 27 Copynumber: 7.3 Consensus size: 27
87954686 TACTTTATGT
*
87954696 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
87954723 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
87954750 AATAACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
87954777 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
87954804 AATGACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
87954831 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
87954858 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
87954885 AATTACC
1 AATTACC
87954892 ATTTTGCCCC
Statistics
Matches: 154, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 154 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.23
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:87955331 original size:31 final size:31
Alignment explanation
Indices: 87955293--87955363 Score: 117
Period size: 31 Copynumber: 2.3 Consensus size: 31
87955283 TTGCATTCAC
87955293 ATTCTGATTTTGATTCTGTTACCTGATA-TCG
1 ATTCTGATTTTGATTCTGTTACCTGATACT-G
*
87955324 ATTCTGATTTTGGTTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
87955355 ATTCTGATT
1 ATTCTGATT
87955364 CTGTCACCTA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
31 37 0.97
32 1 0.03
ACGTcount: A:0.18, C:0.15, G:0.17, T:0.49
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:87955361 original size:6 final size:6
Alignment explanation
Indices: 87955293--87955405 Score: 56
Period size: 6 Copynumber: 18.3 Consensus size: 6
87955283 TTGCATTCAC
* * *
87955293 ATTCTG ATTTTG ATTCTG -TTACCTG ATATC-G ATTCTG ATTTTG GTTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG AT-TCTG ATTCTG ATTCTG ATTCTG
* * * *
87955342 -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA ATTCTA ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
87955392 ATTCT- AGTTCTG AT
1 ATTCTG A-TTCTG AT
87955406 AATGTTTCTT
Statistics
Matches: 83, Mismatches: 11, Indels: 26
0.69 0.09 0.22
Matches are distributed among these distances:
5 8 0.10
6 61 0.73
7 10 0.12
8 3 0.04
9 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:87955383 original size:25 final size:25
Alignment explanation
Indices: 87955337--87955391 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
87955327 CTGATTTTGG
* * *
87955337 TTCTGTTACCTGATACTGATTCTGA
1 TTCTGTCACCTAATACTAATTCTGA
*
87955362 TTCTGTCACCTAATTCTAATTCTGA
1 TTCTGTCACCTAATACTAATTCTGA
87955387 TTCTG
1 TTCTG
87955392 ATTCTAGTTC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.20, C:0.22, G:0.13, T:0.45
Consensus pattern (25 bp):
TTCTGTCACCTAATACTAATTCTGA
Found at i:87962346 original size:42 final size:42
Alignment explanation
Indices: 87962256--87962395 Score: 120
Period size: 44 Copynumber: 3.3 Consensus size: 42
87962246 GTCTCAGATG
* * * * * *
87962256 TGGTCTTACATGTAATCGAATATCGATGCCACTGTCCTAGACA
1 TGGTCTTACACGAAATCAAATA-CGATGCCAATGTCCCAAACA
* *
87962299 GGGTCTTACACGAAATCAAATACGATTCCAATGTCCCAAACA
1 TGGTCTTACACGAAATCAAATACGATGCCAATGTCCCAAACA
* ** **
87962341 TGGTCTTACACATAAATCATAAGT-CGATGCCAACATCCCAAATG
1 TGGTCTTACAC-GAAATCA-AA-TACGATGCCAATGTCCCAAACA
87962385 TGGTCTTACAC
1 TGGTCTTACAC
87962396 AAAAACACAT
Statistics
Matches: 79, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
42 26 0.33
43 24 0.30
44 28 0.35
45 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (42 bp):
TGGTCTTACACGAAATCAAATACGATGCCAATGTCCCAAACA
Found at i:87967470 original size:3 final size:3
Alignment explanation
Indices: 87967462--87967492 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
87967452 ATTTATTAAT
*
87967462 TTA TTA TTA TTA TTA TTA TTA TAA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
87967493 CAATAATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:87967720 original size:19 final size:22
Alignment explanation
Indices: 87967677--87967719 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
87967667 AGTTACAGAG
*
87967677 AAGAAACAAAATAGAAAGAAAA
1 AAGAAACAAAAGAGAAAGAAAA
87967699 AAGAAA-AAAAGA-AAAGAAAA
1 AAGAAACAAAAGAGAAAGAAAA
87967719 A
1 A
87967720 GGAGAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 9 0.45
21 5 0.25
22 6 0.30
ACGTcount: A:0.81, C:0.02, G:0.14, T:0.02
Consensus pattern (22 bp):
AAGAAACAAAAGAGAAAGAAAA
Found at i:87969802 original size:497 final size:497
Alignment explanation
Indices: 87968868--87969860 Score: 1923
Period size: 497 Copynumber: 2.0 Consensus size: 497
87968858 TTAATTGAGC
87968868 TATTGAATGAAACGAGAAAGTGATATTGTAAGATGGAATGTAAGATGAAATTTGTAAAGAGATTG
1 TATTGAATGAAACGAGAAAGTGATATTGTAAGATGGAATGTAAGATGAAATTTGTAAAGAGATTG
*
87968933 AAGGTACGAACCAAAGGATCATGAAATGTTTATATTTGAATTGTGAATTGAATAATTATATGTGG
66 AAGGTACGAACCAAAGGATCATGAAATGTTTATATTTGAAATGTGAATTGAATAATTATATGTGG
87968998 TTTAGAGATGAATCAATGGTTCATGAGTTATTTGAAATCTCATTGATGATTTATAGGATCTATCA
131 TTTAGAGATGAATCAATGGTTCATGAGTTATTTGAAATCTCATTGATGATTTATAGGATCTATCA
87969063 TTGGGAATGATATAATGGAAATATGATAGTTTGGTATGAATTTATATATATGATTTGTATGTATG
196 TTGGGAATGATATAATGGAAATATGATAGTTTGGTATGAATTTATATATATGATTTGTATGTATG
87969128 ATTTGCTAATTATCTATGTATGTTATGATAACTTATTGTTGTTATAATTTGAATTATGATAATAC
261 ATTTGCTAATTATCTATGTATGTTATGATAACTTATTGTTGTTATAATTTGAATTATGATAATAC
87969193 CACTAAGTATTTCCTATACTCAGCGTACAGTTGTTTCCCGTGCTCAGGTTAGGTAGAGTTGAAGT
326 CACTAAGTATTTCCTATACTCAGCGTACAGTTGTTTCCCGTGCTCAGGTTAGGTAGAGTTGAAGT
* *
87969258 TCAGTCAAGCATCCAAGTCAATCCCGACCTCAGCTTAATTTTGGTGATGCATCTATCTTTTAGTA
391 TCAGTCAAGCATCCAAGTCAATCCCGACCTCAGCTCAATTTTGGTGATGCATCTATCTTTTAGAA
87969323 ATGTGGCATGTACTAGGTTTGGTGTTTGTCTCTTGTAAGTGA
456 ATGTGGCATGTACTAGGTTTGGTGTTTGTCTCTTGTAAGTGA
*
87969365 TATTGAATGAAACGAGAAAGTGATATTGTAAGATGGAATGTGAGATGAAATTTGTAAAGAGATTG
1 TATTGAATGAAACGAGAAAGTGATATTGTAAGATGGAATGTAAGATGAAATTTGTAAAGAGATTG
87969430 AAGGTACGAACCAAAGGATCATGAAATGTTTATATTTGAAATGTGAATTGAATAATTATATGTGG
66 AAGGTACGAACCAAAGGATCATGAAATGTTTATATTTGAAATGTGAATTGAATAATTATATGTGG
87969495 TTTAGAGATGAATCAATGGTTCATGAGTTATTTGAAATCTCATTGATGATTTATAGGATCTATCA
131 TTTAGAGATGAATCAATGGTTCATGAGTTATTTGAAATCTCATTGATGATTTATAGGATCTATCA
87969560 TTGGGAATGATATAATGGAAATATGATAGTTTGGTATGAATTTATATATATGATTTGTATGTATG
196 TTGGGAATGATATAATGGAAATATGATAGTTTGGTATGAATTTATATATATGATTTGTATGTATG
87969625 ATTTGCTAATTATCTATGTATGTTATGATAACTTATTGTTGTTATAATTTGAATTATGATAATAC
261 ATTTGCTAATTATCTATGTATGTTATGATAACTTATTGTTGTTATAATTTGAATTATGATAATAC
* * *
87969690 CACTGAGTATTTCCTATACTCAGTGTACGGTTGTTTCCCGTGCTCAGGTTAGGTAGAGTTGAAGT
326 CACTAAGTATTTCCTATACTCAGCGTACAGTTGTTTCCCGTGCTCAGGTTAGGTAGAGTTGAAGT
87969755 TCAGTCAAGCATCCAAGTCAATCCCGACCTCAGCTCAATTTTGGTGATGCATCTATCTTTTAGAA
391 TCAGTCAAGCATCCAAGTCAATCCCGACCTCAGCTCAATTTTGGTGATGCATCTATCTTTTAGAA
87969820 ATGTGGCATGTACTAGGTTTGGTGTTTGTCTCTTGTAAGTG
456 ATGTGGCATGTACTAGGTTTGGTGTTTGTCTCTTGTAAGTG
87969861 TTTTATATTT
Statistics
Matches: 489, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
497 489 1.00
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (497 bp):
TATTGAATGAAACGAGAAAGTGATATTGTAAGATGGAATGTAAGATGAAATTTGTAAAGAGATTG
AAGGTACGAACCAAAGGATCATGAAATGTTTATATTTGAAATGTGAATTGAATAATTATATGTGG
TTTAGAGATGAATCAATGGTTCATGAGTTATTTGAAATCTCATTGATGATTTATAGGATCTATCA
TTGGGAATGATATAATGGAAATATGATAGTTTGGTATGAATTTATATATATGATTTGTATGTATG
ATTTGCTAATTATCTATGTATGTTATGATAACTTATTGTTGTTATAATTTGAATTATGATAATAC
CACTAAGTATTTCCTATACTCAGCGTACAGTTGTTTCCCGTGCTCAGGTTAGGTAGAGTTGAAGT
TCAGTCAAGCATCCAAGTCAATCCCGACCTCAGCTCAATTTTGGTGATGCATCTATCTTTTAGAA
ATGTGGCATGTACTAGGTTTGGTGTTTGTCTCTTGTAAGTGA
Found at i:87981162 original size:17 final size:17
Alignment explanation
Indices: 87981142--87981191 Score: 55
Period size: 18 Copynumber: 2.9 Consensus size: 17
87981132 GTAAAGTGCT
*
87981142 TAATAAGGTGAGATGTC
1 TAATAAGGTGAGATGCC
* *
87981159 TAATAAGGTAGGGTTGCC
1 TAATAAGGT-GAGATGCC
*
87981177 TAATAAGGTAAGATG
1 TAATAAGGTGAGATG
87981192 GGTTATAATA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
17 12 0.46
18 14 0.54
ACGTcount: A:0.36, C:0.06, G:0.30, T:0.28
Consensus pattern (17 bp):
TAATAAGGTGAGATGCC
Found at i:87987147 original size:30 final size:29
Alignment explanation
Indices: 87987111--87987200 Score: 103
Period size: 29 Copynumber: 3.0 Consensus size: 29
87987101 CAGAATATAA
87987111 TGCTCACACAAGTTGACAATATATCAAGGT
1 TGCTCACACAAGTTGAC-ATATATCAAGGT
* *
87987141 TGCTCACACAAGCTT-ACATTTAACATA-GT
1 TGCTCACACAAG-TTGACATATATCA-AGGT
*
87987170 TGCTCACACAAGTTGACATCATATCGAGGT
1 TGCTCACACAAGTTGACAT-ATATCAAGGT
87987200 T
1 T
87987201 ACCCGTCTGG
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
28 2 0.04
29 25 0.50
30 21 0.42
31 2 0.04
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (29 bp):
TGCTCACACAAGTTGACATATATCAAGGT
Found at i:87993997 original size:24 final size:24
Alignment explanation
Indices: 87993970--87994015 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
87993960 AGAGCTTACT
87993970 GTTTTCAGCTCATTAGAGTTTATA
1 GTTTTCAGCTCATTAGAGTTTATA
* *
87993994 GTTTTTAGCTCATTGGAGTTTA
1 GTTTTCAGCTCATTAGAGTTTA
87994016 CTGTTCTCAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.22, C:0.11, G:0.20, T:0.48
Consensus pattern (24 bp):
GTTTTCAGCTCATTAGAGTTTATA
Found at i:87995218 original size:2 final size:2
Alignment explanation
Indices: 87995213--87995245 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
87995203 ATGTTATATA
*
87995213 TG TG TG TG TG TG TG TG TG TC TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
87995246 TTATTTGCTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.03, G:0.45, T:0.52
Consensus pattern (2 bp):
TG
Found at i:87995966 original size:40 final size:42
Alignment explanation
Indices: 87995886--87995967 Score: 114
Period size: 41 Copynumber: 2.0 Consensus size: 42
87995876 TACAGGGGTT
87995886 TTCACACAGCCAAGCACACACCTGTGTCACTAGCCCGTGTCC
1 TTCACACAGCCAAGCACACACCTGTGTCACTAGCCCGTGTCC
* * * *
87995928 TTCACATAGCCTAG-ACACGCCTGTGTCA-TCGCCCGTGTCC
1 TTCACACAGCCAAGCACACACCTGTGTCACTAGCCCGTGTCC
87995968 AAAAACCCGG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
40 11 0.31
41 13 0.36
42 12 0.33
ACGTcount: A:0.21, C:0.39, G:0.18, T:0.22
Consensus pattern (42 bp):
TTCACACAGCCAAGCACACACCTGTGTCACTAGCCCGTGTCC
Found at i:88004167 original size:30 final size:31
Alignment explanation
Indices: 88004110--88004172 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 31
88004100 GTTTCGAGCC
* * * **
88004110 TAGGGGTAAAATGGTTATTTTGTCAAAG-TA
1 TAGGGGCAAAACGGTCATTTTACCAAAGATA
88004140 TAGGGGCAAAACGGTCATTTTACCAAAGATA
1 TAGGGGCAAAACGGTCATTTTACCAAAGATA
88004171 TA
1 TA
88004173 AATTTCGATT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
30 23 0.85
31 4 0.15
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.30
Consensus pattern (31 bp):
TAGGGGCAAAACGGTCATTTTACCAAAGATA
Found at i:88004645 original size:46 final size:45
Alignment explanation
Indices: 88004501--88004669 Score: 171
Period size: 46 Copynumber: 3.6 Consensus size: 45
88004491 TGTGTGAGCT
* * * *
88004501 AGTGTAAGACATGTCTGGGACATGCGTTGGCCACATTATGA-GAA-CC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTC--GA-GACGAAGCC
* * * * * *
88004547 AATGTAAGACCATGTCTGGGACATGGCATCGACATTGAGACGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGA-AGCC
88004595 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-AAGCC
88004641 AGTGTAAGACATGTCTGGGACATGCATCG
1 AGTGTAAGACATGTCTGGGACATGCATCG
88004670 ACTATGAGGT
Statistics
Matches: 101, Mismatches: 16, Indels: 12
0.78 0.12 0.09
Matches are distributed among these distances:
45 2 0.02
46 56 0.55
47 29 0.29
48 14 0.14
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGAAGCC
Found at i:88004714 original size:46 final size:43
Alignment explanation
Indices: 88004549--88004715 Score: 149
Period size: 46 Copynumber: 3.6 Consensus size: 43
88004539 TGAGAACCAA
*
88004549 TGTAAGACCATGTCTGGGACATGGCATCGAC-ATTGAGACGAGTGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGACTA-TGAG--GTGTGC-AG
* * **
88004597 TGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGTAAGCCAG
1 TGTAAGACATGTCTGGGACATGCATC-GACT--ATGAGGTGTG-CAG
88004643 TGTAAGACATGTCTGGGACATGCATCGACTATGAGGTGTGTCAG
1 TGTAAGACATGTCTGGGACATGCATCGACTATGAGGTGTG-CAG
*
88004687 TGCAAGACCATGTCTGGGACATGGCATCG
1 TGTAAGA-CATGTCTGGGACAT-GCATCG
88004716 GCAAAAATAT
Statistics
Matches: 100, Mismatches: 11, Indels: 18
0.78 0.09 0.14
Matches are distributed among these distances:
43 1 0.01
44 14 0.14
45 17 0.17
46 41 0.41
47 17 0.17
48 9 0.09
50 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.31, T:0.23
Consensus pattern (43 bp):
TGTAAGACATGTCTGGGACATGCATCGACTATGAGGTGTGCAG
Found at i:88011749 original size:31 final size:30
Alignment explanation
Indices: 88011696--88011755 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 30
88011686 ATTTTCGAGC
* *
88011696 CTAGGGGCAAAATGGTTATTTTATCAAAGT
1 CTAGGGGCAAAATGGTCATTTTACCAAAGT
*
88011726 CTAGGGGCAAAAATGGTCGTTTTACCAAAG
1 CTAGGGGC-AAAATGGTCATTTTACCAAAG
88011756 ATATGAATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 8 0.31
31 18 0.69
ACGTcount: A:0.33, C:0.13, G:0.25, T:0.28
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTTACCAAAGT
Found at i:88012213 original size:47 final size:45
Alignment explanation
Indices: 88012093--88012219 Score: 134
Period size: 47 Copynumber: 2.8 Consensus size: 45
88012083 TCACTTGTGT
*
88012093 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCATATTATGA
1 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCATATGATGA
* *
88012138 GAGCCAGTGTAAGACCTTGTCT-GAGACATGGCATCGGCAT-TGA-GA
1 GAGCTAGTGTAAGA-CATGTCTAG-GACAT-GCATCGGCATATGATGA
* *
88012183 CGAATGCTAGTATAAGACATATCTAGGACATGCATCG
1 -G-A-GCTAGTGTAAGACATGTCTAGGACATGCATCG
88012220 ACTACGAGAT
Statistics
Matches: 68, Mismatches: 7, Indels: 13
0.77 0.08 0.15
Matches are distributed among these distances:
45 16 0.24
46 20 0.29
47 21 0.31
48 11 0.16
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCATATGATGA
Found at i:88017078 original size:61 final size:61
Alignment explanation
Indices: 88017003--88017124 Score: 235
Period size: 61 Copynumber: 2.0 Consensus size: 61
88016993 TAGCAATTTG
*
88017003 ATCATGTCCAGGTCATCTAAAAGAGAGTTGATTATAGCCATGCAAAGTGTTGCCCCTTGAT
1 ATCATGTCCAGGTCATCTAAAAGAGAGTTGATTATAACCATGCAAAGTGTTGCCCCTTGAT
88017064 ATCATGTCCAGGTCATCTAAAAGAGAGTTGATTATAACCATGCAAAGTGTTGCCCCTTGAT
1 ATCATGTCCAGGTCATCTAAAAGAGAGTTGATTATAACCATGCAAAGTGTTGCCCCTTGAT
88017125 GAGGTGTATT
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (61 bp):
ATCATGTCCAGGTCATCTAAAAGAGAGTTGATTATAACCATGCAAAGTGTTGCCCCTTGAT
Found at i:88026531 original size:40 final size:40
Alignment explanation
Indices: 88026487--88026682 Score: 265
Period size: 40 Copynumber: 4.9 Consensus size: 40
88026477 GCATATAGCT
* *
88026487 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
*
88026527 ACTCGCACCAATGCCTTCGGGACTTAGCCCGGATT-T-GATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAG-TA
* *
88026567 ACTCGCACAAATGCCTTCAGGACTTAGCCCGG-AATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTA
* *
88026607 ACTCGCACAAATGCCTTCGGGACTTAGCCTGGATT-TGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-TTATAGTA
88026647 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
88026683 CATCCGAATA
Statistics
Matches: 137, Mismatches: 11, Indels: 16
0.84 0.07 0.10
Matches are distributed among these distances:
39 3 0.02
40 131 0.96
41 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
Found at i:88026595 original size:80 final size:80
Alignment explanation
Indices: 88026487--88026682 Score: 313
Period size: 80 Copynumber: 2.5 Consensus size: 80
88026477 GCATATAGCT
* * *
88026487 ACTCGCTCAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACCAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT
88026552 AGCCCGGATTTGATA
66 AGCCCGGATTTGATA
* *
88026567 ACTCGCACAAATGCCTTCAGGACTTAGCCCGG-AATTAGTAACTCGCACAAATGCCTTCGGGACT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCACAAATGCCTTCGGGACT
* *
88026631 TAGCCTGGATTTGGTA
65 TAGCCCGGATTTGATA
88026647 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
88026683 CATCCGAATA
Statistics
Matches: 105, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
79 1 0.01
80 103 0.98
81 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT
AGCCCGGATTTGATA
Found at i:88028529 original size:234 final size:234
Alignment explanation
Indices: 88028120--88028823 Score: 1390
Period size: 234 Copynumber: 3.0 Consensus size: 234
88028110 CAAGGACAAG
*
88028120 CACTTTCCCACATAAATTAATAGGCCTCTTTAACACTTGCCTAGCATATTTCTAAATTGTCTCAC
1 CACTTTCCCACATATATTAATAGGCCTCTTTAACACTTGCCTAGCATATTTCTAAATTGTCTCAC
88028185 ATAAGTCCCTACTAATAAATTTCACATACACTGACCAAATTAAAGTATGGAACTATCACACAAGC
66 ATAAGTCCCTACTAATAAATTTCACATACACTGACCAAATTAAAGTATGGAACTATCACACAAGC
88028250 ATTTACGCACATCATAAACACAGAATATAACCTTTAATTATTTATAAGACTCGGTTTCGTGGTCC
131 ATTTACGCACATCATAAACACAGAATATAACCTTTAATTATTTATAAGACTCGGTTTCGTGGTCC
88028315 CGAAACCACTTTCCGACTAGGGTCAATTTAGGGCTGTCA
196 CGAAACCACTTTCCGACTAGGGTCAATTTAGGGCTGTCA
88028354 CACTTTCCCACATATATTAATAGGCCTCTTTAACACTTGCCTAGCATATTTCTAAATTGTCTCAC
1 CACTTTCCCACATATATTAATAGGCCTCTTTAACACTTGCCTAGCATATTTCTAAATTGTCTCAC
88028419 ATAAGTCCCTACTAATAAATTTCACATACACTGACCAAATTAAAGTATGGAACTATCACACAAGC
66 ATAAGTCCCTACTAATAAATTTCACATACACTGACCAAATTAAAGTATGGAACTATCACACAAGC
88028484 ATTTACGCACATCATAAACACAGAATATAACCTTTAATTATTTATAAGACTCGGTTTCGTGGTCC
131 ATTTACGCACATCATAAACACAGAATATAACCTTTAATTATTTATAAGACTCGGTTTCGTGGTCC
88028549 CGAAACCACTTTCCGACTAGGGTCAATTTAGGGCTGTCA
196 CGAAACCACTTTCCGACTAGGGTCAATTTAGGGCTGTCA
88028588 CACTTTCCCACATATATTAATAGGCCTCTTTAACACTTGCCTAGCATATTTCTAAATTGTCTCAC
1 CACTTTCCCACATATATTAATAGGCCTCTTTAACACTTGCCTAGCATATTTCTAAATTGTCTCAC
88028653 ATAAGTCCCTACTAATAAATTTCACATACACTGACCAAATTAAAGTATGGAACTATCACACAAGC
66 ATAAGTCCCTACTAATAAATTTCACATACACTGACCAAATTAAAGTATGGAACTATCACACAAGC
88028718 ATTTACGCACATCATAAACACAGAATATAACCTTTAATTATTTATAAGACTCGGTTTCGTGGTCC
131 ATTTACGCACATCATAAACACAGAATATAACCTTTAATTATTTATAAGACTCGGTTTCGTGGTCC
*
88028783 CGAAACCACTTTTCGACTAGGGTCAATTTAGGGCTGTCA
196 CGAAACCACTTTCCGACTAGGGTCAATTTAGGGCTGTCA
88028822 CA
1 CA
88028824 ACTCTCCCCC
Statistics
Matches: 468, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
234 468 1.00
ACGTcount: A:0.34, C:0.24, G:0.12, T:0.31
Consensus pattern (234 bp):
CACTTTCCCACATATATTAATAGGCCTCTTTAACACTTGCCTAGCATATTTCTAAATTGTCTCAC
ATAAGTCCCTACTAATAAATTTCACATACACTGACCAAATTAAAGTATGGAACTATCACACAAGC
ATTTACGCACATCATAAACACAGAATATAACCTTTAATTATTTATAAGACTCGGTTTCGTGGTCC
CGAAACCACTTTCCGACTAGGGTCAATTTAGGGCTGTCA
Found at i:88032032 original size:27 final size:27
Alignment explanation
Indices: 88032001--88032178 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
88031991 TAAATTGTAC
88032001 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
88032028 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
88032054 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
88032082 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
88032110 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
88032137 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
88032164 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
88032179 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:88032115 original size:82 final size:81
Alignment explanation
Indices: 88032002--88032157 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
88031992 AAATTGTACA
* *
88032002 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
88032066 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
88032083 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
88032148 TGCGAGTTGA
65 TGCGAATTGA
88032158 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:88032169 original size:82 final size:81
Alignment explanation
Indices: 88031998--88032178 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
88031988 GATTAAATTG
* *
88031998 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
88032063 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
88032079 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
88032143 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
88032161 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
88032179 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:88168614 original size:79 final size:81
Alignment explanation
Indices: 88168490--88168673 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
88168480 GCTACTCGTT
* *
88168490 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTC-GGATCTTAACCCG
* *
88168553 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* **
88168569 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCAC-AATGCCTTCGGATCTTAACCCG
* *
88168632 GATATGGTCACTTAGCA
65 GATATAGTAACTTAGCA
88168649 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
88168674 CATCATTCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
78 24 0.26
79 48 0.53
80 19 0.21
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:88168673 original size:40 final size:40
Alignment explanation
Indices: 88168471--88168673 Score: 229
Period size: 39 Copynumber: 5.1 Consensus size: 40
88168461 CGGAATTTAA
** *
88168471 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
88168511 CCGGTTATAGTAACTCGCAC-AATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
88168550 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
88168589 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
88168629 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
88168669 CCGGA
1 CCGGA
88168674 CATCATTCAA
Statistics
Matches: 139, Mismatches: 16, Indels: 16
0.81 0.09 0.09
Matches are distributed among these distances:
38 2 0.01
39 68 0.49
40 57 0.41
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:88172080 original size:41 final size:43
Alignment explanation
Indices: 88172038--88172122 Score: 118
Period size: 44 Copynumber: 2.0 Consensus size: 43
88172028 AGCTTAAAAT
*
88172038 AAAA-GTAACAATTATACATTTAAAAATAATTATAATTTAATA
1 AAAATGTAACAATTACACATTTAAAAATAATTATAATTTAATA
* * *
88172080 AAAATTGTGATAATTACATATTTAAAAATAATTATAATTTAAT
1 AAAA-TGTAACAATTACACATTTAAAAATAATTATAATTTAAT
88172123 TTACCGTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
42 4 0.11
44 33 0.89
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.39
Consensus pattern (43 bp):
AAAATGTAACAATTACACATTTAAAAATAATTATAATTTAATA
Found at i:88172083 original size:20 final size:20
Alignment explanation
Indices: 88172058--88172122 Score: 58
Period size: 20 Copynumber: 3.0 Consensus size: 20
88172048 ATTATACATT
88172058 TAAAAATAATTATAATTTAA
1 TAAAAATAATTATAATTTAA
** * *
88172078 TAAAAATTGTGATAATTACATATT
1 TAAAAATAATTATAATT---TA-A
88172102 TAAAAATAATTATAATTTAA
1 TAAAAATAATTATAATTTAA
88172122 T
1 T
88172123 TTACCGTTAT
Statistics
Matches: 33, Mismatches: 8, Indels: 8
0.67 0.16 0.16
Matches are distributed among these distances:
20 15 0.45
21 2 0.06
23 2 0.06
24 14 0.42
ACGTcount: A:0.54, C:0.02, G:0.03, T:0.42
Consensus pattern (20 bp):
TAAAAATAATTATAATTTAA
Found at i:88184145 original size:47 final size:48
Alignment explanation
Indices: 88184021--88184159 Score: 199
Period size: 48 Copynumber: 2.9 Consensus size: 48
88184011 TACCACGGTT
* * * *
88184021 ATACGTGTAACGTGGTGCTAAGTGGATATACCATGATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACACATATTG
* *
88184069 ATACATGTAACGTGGTGCTAAGTGAATATGCCACGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACACATATTG
* *
88184117 ATTCAT-TAACGTGGTGCTAAGTGGATATGCCACGGTTATACAT
1 ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACACAT
88184160 GTTAATTTGA
Statistics
Matches: 81, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 34 0.42
48 47 0.58
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACACATATTG
Found at i:88184968 original size:41 final size:40
Alignment explanation
Indices: 88184892--88185100 Score: 159
Period size: 41 Copynumber: 5.1 Consensus size: 40
88184882 ACAAAAATTG
* ** * *
88184892 TAAAACACAGAGCAGTAGCGGCGTTTTACTAAAAACACCGC
1 TAAAA-ACAGAGCAATAGCGGCGTTTTTGTTAAAACGCCGC
* *
88184933 TAAAAACAGAGAAATAGCGGCGTTTTTTGTTAAAACGCTGC
1 TAAAAACAGAGCAATAGCGGCG-TTTTTGTTAAAACGCCGC
* * *
88184974 TAAAAACAGAGCAATAGCGGCGCTTTTGGTAAAATGCCGC
1 TAAAAACAGAGCAATAGCGGCGTTTTTGTTAAAACGCCGC
* * * * * *
88185014 TAAAAGTCGGAGCATTAGCGGCACTTTTAG-TAAAATGCCGC
1 TAAAA-ACAGAGCAATAGCGGC-GTTTTTGTTAAAACGCCGC
* * * * * * *
88185055 TAAAAGTCGGAGCATTAGCGGTGCTTTTGATAAAACGCCGT
1 TAAAA-ACAGAGCAATAGCGGCGTTTTTGTTAAAACGCCGC
88185096 TAAAA
1 TAAAA
88185101 GTCATATAAC
Statistics
Matches: 140, Mismatches: 24, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
40 38 0.27
41 98 0.70
42 4 0.03
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGTTTTTGTTAAAACGCCGC
Found at i:88185101 original size:41 final size:41
Alignment explanation
Indices: 88184947--88185103 Score: 174
Period size: 41 Copynumber: 3.8 Consensus size: 41
88184937 AACAGAGAAA
* * * * * * *
88184947 TAGCGGCGTTTTTTGTTAAAACGCTGCTAAAA-ACAGAGCAA
1 TAGCGGCG-CTTTTGATAAAATGCCGCTAAAAGTCGGAGCAT
*
88184988 TAGCGGCGCTTTTGGTAAAATGCCGCTAAAAGTCGGAGCAT
1 TAGCGGCGCTTTTGATAAAATGCCGCTAAAAGTCGGAGCAT
*
88185029 TAGCGGCACTTTT-AGTAAAATGCCGCTAAAAGTCGGAGCAT
1 TAGCGGCGCTTTTGA-TAAAATGCCGCTAAAAGTCGGAGCAT
* * *
88185070 TAGCGGTGCTTTTGATAAAACGCCGTTAAAAGTC
1 TAGCGGCGCTTTTGATAAAATGCCGCTAAAAGTC
88185104 ATATAACCCC
Statistics
Matches: 100, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
40 19 0.19
41 80 0.80
42 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (41 bp):
TAGCGGCGCTTTTGATAAAATGCCGCTAAAAGTCGGAGCAT
Found at i:88185345 original size:7 final size:7
Alignment explanation
Indices: 88185333--88185396 Score: 56
Period size: 7 Copynumber: 9.0 Consensus size: 7
88185323 TTTATTTTTT
*
88185333 GGTTTAC
1 GGTTTAA
88185340 GGTTTAA
1 GGTTTAA
**
88185347 TATTTAA
1 GGTTTAA
88185354 GGTTTAA
1 GGTTTAA
*
88185361 GGTTTAT
1 GGTTTAA
* *
88185368 GATTTAG
1 GGTTTAA
*
88185375 GGTTTTAT
1 GG-TTTAA
88185383 GGTTTAA
1 GGTTTAA
88185390 GGTTTAA
1 GGTTTAA
88185397 TGGCCATGGG
Statistics
Matches: 45, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
7 39 0.87
8 6 0.13
ACGTcount: A:0.25, C:0.02, G:0.25, T:0.48
Consensus pattern (7 bp):
GGTTTAA
Found at i:88185358 original size:21 final size:22
Alignment explanation
Indices: 88185333--88185389 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
88185323 TTTATTTTTT
*
88185333 GGTTTACGGTTTAAT-ATTTAA
1 GGTTTAAGGTTTAATGATTTAA
*
88185354 GGTTTAAGGTTT-ATGATTTAG
1 GGTTTAAGGTTTAATGATTTAA
*
88185375 GGTTTTATGGTTTAA
1 GG-TTTAAGGTTTAA
88185390 GGTTTAATGG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 2 0.07
21 18 0.60
22 9 0.30
23 1 0.03
ACGTcount: A:0.25, C:0.02, G:0.25, T:0.49
Consensus pattern (22 bp):
GGTTTAAGGTTTAATGATTTAA
Found at i:88185399 original size:15 final size:15
Alignment explanation
Indices: 88185349--88185399 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
88185339 CGGTTTAATA
88185349 TTTAA-GGTTTAAGG
1 TTTAATGGTTTAAGG
* *
88185363 TTT-ATGATTTAGGG
1 TTTAATGGTTTAAGG
*
88185377 TTTTATGGTTTAAGG
1 TTTAATGGTTTAAGG
88185392 TTTAATGG
1 TTTAATGG
88185400 CCATGGGTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
13 1 0.03
14 13 0.43
15 16 0.53
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (15 bp):
TTTAATGGTTTAAGG
Found at i:88191772 original size:44 final size:43
Alignment explanation
Indices: 88191685--88191773 Score: 108
Period size: 43 Copynumber: 2.0 Consensus size: 43
88191675 GTTATATAGT
* * *
88191685 GGCGTTTTTAGAAAAAGTGCCGCTAAAGGTCATAGTCTTTAGC
1 GGCGTTTTCAGAAAAAGTGCCGCTAAAAGTCATACTCTTTAGC
* *
88191728 GGCGTTTTCAGGAAAAGTGCCGTTAAAAGTCATGAC-CTTTTAGC
1 GGCGTTTTCAGAAAAAGTGCCGCTAAAAGTCAT-ACTC-TTTAGC
88191772 GG
1 GG
88191774 TATCTTTTCA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
43 30 0.77
44 9 0.23
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (43 bp):
GGCGTTTTCAGAAAAAGTGCCGCTAAAAGTCATACTCTTTAGC
Found at i:88194117 original size:15 final size:15
Alignment explanation
Indices: 88194097--88194149 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
88194087 GTATCTTGGG
88194097 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
88194112 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
* *
88194127 TTTCTCTA-TCTTGAA
1 TTTCTTTATTC-TGGA
88194142 TTTCTTTA
1 TTTCTTTA
88194150 CTCAGTTTTC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
14 2 0.06
15 30 0.94
ACGTcount: A:0.13, C:0.15, G:0.11, T:0.60
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:88194127 original size:30 final size:30
Alignment explanation
Indices: 88194093--88194149 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
88194083 TATCGTATCT
* *
88194093 TGGGTTTCTTTAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTCTATCT-TGAATTTCTTTATTC
88194123 TGGGTTTCTCTATCTTGAATTTCTTTA
1 TGGGTTTCTCTATCTTGAATTTCTTTA
88194150 CTCAGTTTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.12, C:0.14, G:0.16, T:0.58
Consensus pattern (30 bp):
TGGGTTTCTCTATCTTGAATTTCTTTATTC
Found at i:88206972 original size:42 final size:43
Alignment explanation
Indices: 88206918--88207028 Score: 120
Period size: 43 Copynumber: 2.6 Consensus size: 43
88206908 AATTTACGTG
* * * *
88206918 TAAGACCATGTCTGGGACATCGGTATCG-TATCTG-ATTTCATA
1 TAAGACCCTGTCTGGGACATAGGCATCGATA-CTGAATTACATA
* *
88206960 TAAGACCCTGTCTGGGACAAAGGCATCGATACTGAATTACATG
1 TAAGACCCTGTCTGGGACATAGGCATCGATACTGAATTACATA
*
88207003 TAAGACCAC-GTCTGGGACATTGGCAT
1 TAAGACC-CTGTCTGGGACATAGGCAT
88207029 TATACTCGTT
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
42 27 0.47
43 30 0.52
44 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (43 bp):
TAAGACCCTGTCTGGGACATAGGCATCGATACTGAATTACATA
Found at i:88207028 original size:43 final size:42
Alignment explanation
Indices: 88206911--88207028 Score: 123
Period size: 42 Copynumber: 2.8 Consensus size: 42
88206901 AATTTGAAAT
* * * *
88206911 TTACGTGTAAGACCATGTCTGGGACATCGGTATCGTATCTGA
1 TTACATGTAAGACCACGTCTGGGACATAGGCATCGTATCTGA
* * *
88206953 TTTCATATAAGACC-CTGTCTGGGACAAAGGCATCG-ATACTGAA
1 TTACATGTAAGACCAC-GTCTGGGACATAGGCATCGTAT-CTG-A
*
88206996 TTACATGTAAGACCACGTCTGGGACATTGGCAT
1 TTACATGTAAGACCACGTCTGGGACATAGGCAT
88207029 TATACTCGTT
Statistics
Matches: 61, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
41 2 0.03
42 30 0.49
43 28 0.46
44 1 0.02
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (42 bp):
TTACATGTAAGACCACGTCTGGGACATAGGCATCGTATCTGA
Found at i:88209350 original size:49 final size:48
Alignment explanation
Indices: 88209170--88209363 Score: 192
Period size: 50 Copynumber: 3.9 Consensus size: 48
88209160 TCTATTGTGA
* * * * *
88209170 GGTCGCATGTGTAGTAGTAAGTGTAGGCTACTATGCATACCCGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CC--AGACTGT
* * * * **
88209221 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGA-TGGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACT-GT
* *
88209269 GAGATCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACTGTT
1 G-G-TCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTG-T
*
88209320 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
88209364 TAGCTTCATC
Statistics
Matches: 120, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
47 1 0.01
48 5 0.04
49 39 0.32
50 41 0.34
51 34 0.28
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (48 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGACTGT
Found at i:88214042 original size:46 final size:46
Alignment explanation
Indices: 88213975--88214104 Score: 183
Period size: 46 Copynumber: 2.8 Consensus size: 46
88213965 ATGTAACCCG
* *
88213975 TCCATAAGCGAGCTCGGACTCAACTCAACGA-TCTCGGGA-GTTCGCA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGT-TC-GGACGTTCGCA
*
88214021 TCCATAAGTGAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCA
**
88214067 TCCATAAGTGAACTCAAACTCAACTCAACGAGTTCGGA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
88214105 TGCCCAAATA
Statistics
Matches: 76, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
45 3 0.04
46 72 0.95
47 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCA
Found at i:88229739 original size:49 final size:49
Alignment explanation
Indices: 88229675--88229848 Score: 204
Period size: 49 Copynumber: 3.5 Consensus size: 49
88229665 CTGATACGCA
** *
88229675 TAGTAGCCTATACTTAGTACTACACATGCGACCAATTATCCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
** * * * * * *
88229724 TAGTAGCCTGCACTTAGTACTGTACACGTGATCAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAA-TTATCCGGTACACG
* * *
88229774 TAGTAGCTTGCACTTAGTACTACACATGCGACCAATAATTCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
*
88229823 TAGTAGCCTGTACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
88229849 CGTGACCTCA
Statistics
Matches: 100, Mismatches: 24, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
49 61 0.61
50 39 0.39
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
Found at i:88229840 original size:99 final size:99
Alignment explanation
Indices: 88229669--88229853 Score: 289
Period size: 99 Copynumber: 1.9 Consensus size: 99
88229659 AGCTATCTGA
* *
88229669 TACGCATAGTAGCCTATACTTAGTACTACACATGCGACCAATTATCCGATACACGTAGTAGCCTG
1 TACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCCGATACACGTAGTAGCCTG
**
88229734 CACTTAGTACTGTACACGTGATCAAGTTATCGGG
66 CACTTAGTACTACACACGTGATCAAGTTATCGGG
* * * *
88229768 TACGCATAGTAGCTTGCACTTAGTACTACACATGCGACCAATAATTCGGTACACGTAGTAGCCTG
1 TACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCCGATACACGTAGTAGCCTG
*
88229833 TACTTAGTACTACACACGTGA
66 CACTTAGTACTACACACGTGA
88229854 CCTCACAATA
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
99 77 1.00
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (99 bp):
TACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAATAATCCGATACACGTAGTAGCCTG
CACTTAGTACTACACACGTGATCAAGTTATCGGG
Found at i:88234156 original size:49 final size:49
Alignment explanation
Indices: 88233996--88234169 Score: 192
Period size: 49 Copynumber: 3.5 Consensus size: 49
88233986 CTGATACGCA
** * * *
88233996 TAGTAGCCTATACTTAGTACTACACATGCAACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATTCGACCAATTATTCGGTACACG
* * * *
88234045 TAGTAGCCTGCACTTAGTACTGTACAC-GT-GATCAAGTTA-TCGGGTACGCA
1 TAGTAGCCTGCACTTAGTAC--TACACATTCGACCAA-TTATTC-GGTACACG
* *
88234095 TAGTAGCTTGCACTTAGTACTACACATTCGACCAATAATTCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATTCGACCAATTATTCGGTACACG
88234144 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
88234170 CGTGACCTCA
Statistics
Matches: 102, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
48 5 0.05
49 57 0.56
50 35 0.34
51 5 0.05
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.28
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATTCGACCAATTATTCGGTACACG
Found at i:88234161 original size:99 final size:99
Alignment explanation
Indices: 88233990--88234174 Score: 289
Period size: 99 Copynumber: 1.9 Consensus size: 99
88233980 AGCTATCTGA
* *
88233990 TACGCATAGTAGCCTATACTTAGTACTACACATGCAACCAATTATCCGGTACACGTAGTAGCCTG
1 TACGCATAGTAGCCTACACTTAGTACTACACATGCAACCAATAATCCGGTACACGTAGTAGCCTG
**
88234055 CACTTAGTACTGTACACGTGATCAAGTTATCGGG
66 CACTTAGTACTACACACGTGATCAAGTTATCGGG
* * * * *
88234089 TACGCATAGTAGCTTGCACTTAGTACTACACATTCGACCAATAATTCGGTACACGTAGTAGCCTG
1 TACGCATAGTAGCCTACACTTAGTACTACACATGCAACCAATAATCCGGTACACGTAGTAGCCTG
88234154 CACTTAGTACTACACACGTGA
66 CACTTAGTACTACACACGTGA
88234175 CCTCACAATA
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
99 77 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (99 bp):
TACGCATAGTAGCCTACACTTAGTACTACACATGCAACCAATAATCCGGTACACGTAGTAGCCTG
CACTTAGTACTACACACGTGATCAAGTTATCGGG
Found at i:88236785 original size:46 final size:44
Alignment explanation
Indices: 88236735--88236910 Score: 183
Period size: 46 Copynumber: 3.8 Consensus size: 44
88236725 ACAATGTTTA
*
88236735 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTTACGTCTCGAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGC-T-CGTCTCAAT
* *
88236781 GCCGATGCATGTCCCAAACATGTCTTACACTAGCACCCGTCTCAAT
1 GCCGATGCATGTCCCAAACATGTCTTACACT-G-GCTCGTCTCAAT
* * * *
88236827 GCCAATGCCATTTCCCAGACATGTTCTTACACTGGCTC-TCATAATAT
1 GCCGATG-CATGTCCCAAACATG-TCTTACACTGGCTCGTC-TCA-AT
* *
88236874 GGCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 -GCCGATGCATGTCCCAAACATGTCTTACACTGGCTC
88236911 ACACAAGTGA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
45 2 0.02
46 62 0.56
47 31 0.28
48 16 0.14
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.27
Consensus pattern (44 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTGGCTCGTCTCAAT
Found at i:88237282 original size:30 final size:29
Alignment explanation
Indices: 88237232--88237290 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
88237222 AAATTTACAT
* * *
88237232 CTTTGGTAAAATGACTATTTTGCCTCTTAA
1 CTTTGGCAAAATGACCATTTTACC-CTTAA
*
88237262 CTTTGGCAAACTGACCATTTTACCCTTAA
1 CTTTGGCAAAATGACCATTTTACCCTTAA
88237291 GCTCGAAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.27, C:0.22, G:0.12, T:0.39
Consensus pattern (29 bp):
CTTTGGCAAAATGACCATTTTACCCTTAA
Found at i:88239919 original size:16 final size:17
Alignment explanation
Indices: 88239898--88239929 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
88239888 GCCTATTACA
88239898 TAAACCCCA-AAAGACC
1 TAAACCCCATAAAGACC
88239914 TAAACCCCATAAAGAC
1 TAAACCCCATAAAGAC
88239930 TCATTGAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.50, C:0.34, G:0.06, T:0.09
Consensus pattern (17 bp):
TAAACCCCATAAAGACC
Found at i:88243275 original size:21 final size:22
Alignment explanation
Indices: 88243228--88243277 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
88243218 TATGTACGAG
88243228 AATGTGTTTCGACTAAAGAAACT
1 AATGTG-TTCGACTAAAGAAACT
* *
88243251 -ATGTGTTCGACTGAAGCAA-T
1 AATGTGTTCGACTAAAGAAACT
88243271 AATGTGT
1 AATGTGT
88243278 AAAAAATTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 1 0.04
21 18 0.75
22 5 0.21
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (22 bp):
AATGTGTTCGACTAAAGAAACT
Found at i:88252120 original size:44 final size:42
Alignment explanation
Indices: 88252044--88252141 Score: 117
Period size: 44 Copynumber: 2.3 Consensus size: 42
88252034 TATAGTGTTC
* * *
88252044 TCGTGTAAGACCACATCTGGGGCGTTGGCATCG-ACTTATGATT
1 TCGTGTAAGACCACATCTGGGACATTGCCATCGCA-TT-TGATT
*
88252087 TACGTGTAAGACCACATTTGGGACATTGCCATCGCATTTGATT
1 T-CGTGTAAGACCACATCTGGGACATTGCCATCGCATTTGATT
*
88252130 TTGTGTAAGACC
1 TCGTGTAAGACC
88252142 TTGTCTGGGA
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
42 10 0.21
43 7 0.15
44 30 0.62
45 1 0.02
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.32
Consensus pattern (42 bp):
TCGTGTAAGACCACATCTGGGACATTGCCATCGCATTTGATT
Found at i:88255420 original size:28 final size:28
Alignment explanation
Indices: 88255388--88255444 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
88255378 AAACTCAGCA
88255388 AACATTCAAAACCGAGACATAAATTTCT
1 AACATTCAAAACCGAGACATAAATTTCT
88255416 AACATTCAAAACCGAGACATAAATTTCT
1 AACATTCAAAACCGAGACATAAATTTCT
88255444 A
1 A
88255445 CTCAAATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.47, C:0.21, G:0.07, T:0.25
Consensus pattern (28 bp):
AACATTCAAAACCGAGACATAAATTTCT
Found at i:88257392 original size:42 final size:42
Alignment explanation
Indices: 88257329--88257451 Score: 174
Period size: 42 Copynumber: 2.9 Consensus size: 42
88257319 TACGTGTATT
* * *
88257329 GATGCTAATAGCCCAGCTATGGTCTTACACGAAGTCTCATATC
1 GATGCT-ATATCCCAGATATGGTCTTACACGAAATCTCATATC
* * *
88257372 GATGCTATATCCCAGTTATGGTCTTACACGAAATTTCATCTC
1 GATGCTATATCCCAGATATGGTCTTACACGAAATCTCATATC
*
88257414 GATGCCATATCCCAGATATGGTCTTACACGAAATCTCA
1 GATGCTATATCCCAGATATGGTCTTACACGAAATCTCA
88257452 GTAACCCTAA
Statistics
Matches: 72, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
42 66 0.92
43 6 0.08
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
GATGCTATATCCCAGATATGGTCTTACACGAAATCTCATATC
Found at i:88257620 original size:46 final size:46
Alignment explanation
Indices: 88257553--88257647 Score: 181
Period size: 46 Copynumber: 2.1 Consensus size: 46
88257543 AGTATTGTAC
88257553 TCAATAGCATTCACATTTCATTTCAATAATATAGCATTTAACACAA
1 TCAATAGCATTCACATTTCATTTCAATAATATAGCATTTAACACAA
*
88257599 TCAATAGCATTCACATTTCATTTCAATAATATAGCATTTACCACAA
1 TCAATAGCATTCACATTTCATTTCAATAATATAGCATTTAACACAA
88257645 TCA
1 TCA
88257648 TATCAATTAA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.40, C:0.21, G:0.04, T:0.35
Consensus pattern (46 bp):
TCAATAGCATTCACATTTCATTTCAATAATATAGCATTTAACACAA
Found at i:88258336 original size:12 final size:12
Alignment explanation
Indices: 88258319--88258344 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
88258309 TGGACAAAAA
88258319 TTGGCTTTTAAT
1 TTGGCTTTTAAT
88258331 TTGGCTTTTAAT
1 TTGGCTTTTAAT
88258343 TT
1 TT
88258345 ATTTTAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.08, G:0.15, T:0.62
Consensus pattern (12 bp):
TTGGCTTTTAAT
Found at i:88271407 original size:29 final size:29
Alignment explanation
Indices: 88271266--88271404 Score: 156
Period size: 29 Copynumber: 4.8 Consensus size: 29
88271256 CATACATGCG
*
88271266 TATGGCCCACTTA-GCCC-AATCTCATTTA
1 TATGGCCCA-TTAGGCCCAAATCACATTTA
* * *
88271294 TATGGCCCATCAGGCCCAATTCACATTCA
1 TATGGCCCATTAGGCCCAAATCACATTTA
* * * * * *
88271323 CATAGCCCATCAGGCCCAATTCATATTCA
1 TATGGCCCATTAGGCCCAAATCACATTTA
*
88271352 TATGGCCCATTAGGCCCAAATCACCTTTA
1 TATGGCCCATTAGGCCCAAATCACATTTA
88271381 TATGGCCCATTAGGCCCAAATCAC
1 TATGGCCCATTAGGCCCAAATCAC
88271405 CTTATATTCA
Statistics
Matches: 95, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
27 2 0.02
28 13 0.14
29 80 0.84
ACGTcount: A:0.28, C:0.33, G:0.13, T:0.26
Consensus pattern (29 bp):
TATGGCCCATTAGGCCCAAATCACATTTA
Found at i:88291401 original size:18 final size:18
Alignment explanation
Indices: 88291380--88291419 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
88291370 ATTCGGGTAA
88291380 AATCGAAAAAATTCGGTT
1 AATCGAAAAAATTCGGTT
***
88291398 AATCGGCCAAATTCGGTT
1 AATCGAAAAAATTCGGTT
88291416 AATC
1 AATC
88291420 AGTCGGTTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.28
Consensus pattern (18 bp):
AATCGAAAAAATTCGGTT
Found at i:88291687 original size:5 final size:6
Alignment explanation
Indices: 88291674--88291714 Score: 64
Period size: 6 Copynumber: 6.5 Consensus size: 6
88291664 ATAATTTAAT
88291674 AAATAA AAATAA AAATCTAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
88291715 ACATATAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 27 0.82
8 6 0.18
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:88291708 original size:21 final size:22
Alignment explanation
Indices: 88291651--88291708 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 22
88291641 CAACCCAATC
*
88291651 ATAAAAATTACAAATAATTTAATAA
1 ATAAAAA-TA-AAA-AATCTAATAA
88291676 ATAAAAAT-AAAAATCTAA-AA
1 ATAAAAATAAAAAATCTAATAA
88291696 ATAAAAATAAAAA
1 ATAAAAATAAAAA
88291709 TAAAAAACAT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
20 10 0.32
21 10 0.32
22 3 0.10
24 1 0.03
25 7 0.23
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.24
Consensus pattern (22 bp):
ATAAAAATAAAAAATCTAATAA
Found at i:88291715 original size:20 final size:20
Alignment explanation
Indices: 88291674--88291715 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
88291664 ATAATTTAAT
**
88291674 AAATAAAAATAAAAATCTAA
1 AAATAAAAATAAAAATAAAA
88291694 AAATAAAAATAAAAATAAAA
1 AAATAAAAATAAAAATAAAA
88291714 AA
1 AA
88291716 CATATAATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.81, C:0.02, G:0.00, T:0.17
Consensus pattern (20 bp):
AAATAAAAATAAAAATAAAA
Found at i:88291750 original size:9 final size:9
Alignment explanation
Indices: 88291736--88291810 Score: 87
Period size: 9 Copynumber: 8.3 Consensus size: 9
88291726 TATACAAATG
*
88291736 ATTCGGCTA
1 ATTCGGTTA
88291745 ATTCGGTTA
1 ATTCGGTTA
* *
88291754 ATTTGGGTA
1 ATTCGGTTA
*
88291763 ATTCGGGTA
1 ATTCGGTTA
*
88291772 ATTCAGTTA
1 ATTCGGTTA
*
88291781 ATTCGATTA
1 ATTCGGTTA
88291790 ATTCGGTTA
1 ATTCGGTTA
*
88291799 ATTCAGTTA
1 ATTCGGTTA
88291808 ATT
1 ATT
88291811 TTATACTTAT
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 56 1.00
ACGTcount: A:0.27, C:0.11, G:0.20, T:0.43
Consensus pattern (9 bp):
ATTCGGTTA
Found at i:88291774 original size:27 final size:27
Alignment explanation
Indices: 88291736--88291811 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
88291726 TATACAAATG
* *
88291736 ATTCGGCTAATTCGGTTAATTTGGGTA
1 ATTCGGCTAATTCAGTTAATTTGAGTA
* * *
88291763 ATTCGGGTAATTCAGTTAATTCGATTA
1 ATTCGGCTAATTCAGTTAATTTGAGTA
*
88291790 ATTCGGTTAATTCAGTTAATTT
1 ATTCGGCTAATTCAGTTAATTT
88291812 TATACTTATT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.26, C:0.11, G:0.20, T:0.43
Consensus pattern (27 bp):
ATTCGGCTAATTCAGTTAATTTGAGTA
Found at i:88294367 original size:13 final size:13
Alignment explanation
Indices: 88294345--88294406 Score: 88
Period size: 13 Copynumber: 4.8 Consensus size: 13
88294335 TTTGGCAATA
88294345 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
*
88294358 CTTTTAAAAAGTG
1 CTTTTGAAAAGTG
* *
88294371 CTGTGGAAAAGTG
1 CTTTTGAAAAGTG
*
88294384 CTTTTGAGAAGTG
1 CTTTTGAAAAGTG
88294397 CTTTTGAAAA
1 CTTTTGAAAA
88294407 TTTTAGGTGT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 41 1.00
ACGTcount: A:0.32, C:0.08, G:0.24, T:0.35
Consensus pattern (13 bp):
CTTTTGAAAAGTG
Found at i:88296552 original size:73 final size:72
Alignment explanation
Indices: 88296462--88296671 Score: 323
Period size: 72 Copynumber: 2.9 Consensus size: 72
88296452 CTAATTTAGT
* * *
88296462 ATAAATAAGTAGGACATAAATTCAATATCCCAAAGACCAAACATAAACAACTATTAATAAAAGTA
1 ATAAATAAGTAGAACATAAATTCAATAT-CCAAAAACCAAACATAAACAACTATTAATAAAACTA
88296527 GATTACAC
65 GATTACAC
* * *
88296535 ATAAATAAGTAGAACATAAATTCAATATTCAAAAACCAAACATAAACAACCATTGATAAAACTAG
1 ATAAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAACTATTAATAAAACTAG
88296600 ATTACAC
66 ATTACAC
* *
88296607 ATAAATAAGTAGAACATAAGTTCAATATCCAAAAACCAAACATAAATAACTA-TAGATAAAACTA
1 ATAAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAACTATTA-ATAAAACTA
88296671 G
65 G
88296672 TTTAGCATTT
Statistics
Matches: 125, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
71 1 0.01
72 97 0.78
73 27 0.22
ACGTcount: A:0.55, C:0.16, G:0.07, T:0.22
Consensus pattern (72 bp):
ATAAATAAGTAGAACATAAATTCAATATCCAAAAACCAAACATAAACAACTATTAATAAAACTAG
ATTACAC
Found at i:88297121 original size:18 final size:18
Alignment explanation
Indices: 88297100--88297165 Score: 123
Period size: 18 Copynumber: 3.7 Consensus size: 18
88297090 TCCATCAATT
88297100 TGAACATCATTTGAAATG
1 TGAACATCATTTGAAATG
88297118 TGAACATCATTTGAAATG
1 TGAACATCATTTGAAATG
*
88297136 TGAACATCATTTAAAATG
1 TGAACATCATTTGAAATG
88297154 TGAACATCATTT
1 TGAACATCATTT
88297166 CTCACATTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
18 47 1.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.35
Consensus pattern (18 bp):
TGAACATCATTTGAAATG
Done.