Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 260 of 295
Found at i:89539131 original size:21 final size:20
Alignment explanation
Indices: 89539107--89539151 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
89539097 TCGCTTCTCC
*
89539107 CACGCCCGTGTGTTATGGTA
1 CACGCCCGTGTATTATGGTA
*
89539127 GCACGCCCGTGTATTATTGTA
1 -CACGCCCGTGTATTATGGTA
89539148 CACG
1 CACG
89539152 GCTGAATGGC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.18, C:0.27, G:0.27, T:0.29
Consensus pattern (20 bp):
CACGCCCGTGTATTATGGTA
Found at i:89546230 original size:47 final size:47
Alignment explanation
Indices: 89546176--89546343 Score: 264
Period size: 47 Copynumber: 3.6 Consensus size: 47
89546166 TATTTGAATA
* *
89546176 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
89546223 AATGTGAAAGTGTATTTATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
89546270 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGACCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
89546317 AATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
89546344 TCTCGAAGGG
Statistics
Matches: 111, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 111 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:89549187 original size:40 final size:40
Alignment explanation
Indices: 89549089--89549309 Score: 292
Period size: 40 Copynumber: 5.5 Consensus size: 40
89549079 ACCCAAGTAT
* *
89549089 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
**
89549128 CTTC-GG-CTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
89549166 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
89549206 CTTCGGGACTTAGCCCGG-TATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* * *
89549248 CTTCGGGACTTAGCCCGGATATAGTAACTTGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
89549288 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
89549310 CATCCGAATA
Statistics
Matches: 163, Mismatches: 9, Indels: 19
0.85 0.05 0.10
Matches are distributed among these distances:
37 4 0.02
38 28 0.17
39 16 0.10
40 79 0.48
42 28 0.17
43 8 0.05
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:89549267 original size:82 final size:80
Alignment explanation
Indices: 89549089--89549309 Score: 292
Period size: 82 Copynumber: 2.8 Consensus size: 80
89549079 ACCCAAGTAT
* *
89549089 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTC-GG-CTTAGCCCGGATATAG
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
**
89549150 TCACTAGCATGAATGC
65 TCACTAGCACAAATGC
89549166 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGG-TATAG-
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
89549229 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
* * *
89549248 CTTCGGGACTTAGCCCGGATATAGTAACTTGCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
89549310 CATCCGAATA
Statistics
Matches: 128, Mismatches: 7, Indels: 12
0.87 0.05 0.08
Matches are distributed among these distances:
77 12 0.09
78 28 0.22
79 12 0.09
80 10 0.08
82 63 0.49
83 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:89549301 original size:122 final size:117
Alignment explanation
Indices: 89549089--89549309 Score: 345
Period size: 122 Copynumber: 1.8 Consensus size: 117
89549079 ACCCAAGTAT
* *
89549089 CTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGCTTAGCCCGGATATAGTCAC
1 CTTCGGGACTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGCTTAGCCCGGATATAGTAAC
*
89549154 TAGCATGAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
66 TAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
89549206 CTTCGGGACTTAGCCCGG-TATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAG-CCGGATATAGC-A--ACTCGCACAAATGCCTTC-GG-CTTAGCCCGGATAT
*
89549270 AGTAACTTGCATAAATGCCTTCGGGACTTAGCCCGGATAT
60 AGTAACTAGCATAAATGCCTTCGGGACTTAGCCCGGATAT
89549310 CATCCGAATA
Statistics
Matches: 94, Mismatches: 4, Indels: 7
0.90 0.04 0.07
Matches are distributed among these distances:
117 18 0.19
118 5 0.05
120 18 0.19
121 2 0.02
122 51 0.54
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (117 bp):
CTTCGGGACTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGGCTTAGCCCGGATATAGTAAC
TAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:89553040 original size:15 final size:15
Alignment explanation
Indices: 89553020--89553050 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
89553010 AAATATGAAA
89553020 GATATGTTTTGGATT
1 GATATGTTTTGGATT
*
89553035 GATATGTTTTGTATT
1 GATATGTTTTGGATT
89553050 G
1 G
89553051 GAATTTTTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.26, T:0.55
Consensus pattern (15 bp):
GATATGTTTTGGATT
Found at i:89556547 original size:27 final size:27
Alignment explanation
Indices: 89556517--89556573 Score: 64
Period size: 26 Copynumber: 2.1 Consensus size: 27
89556507 ACTACAATAT
*
89556517 CCTAAGTATG-AAAATTACCATTATACC
1 CCTAAG-ATGCAAAATGACCATTATACC
* *
89556544 CCT-AGGTGCAAAATGACTATTATACC
1 CCTAAGATGCAAAATGACCATTATACC
89556570 CCTA
1 CCTA
89556574 GGGTTGATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
25 2 0.08
26 20 0.80
27 3 0.12
ACGTcount: A:0.37, C:0.25, G:0.11, T:0.28
Consensus pattern (27 bp):
CCTAAGATGCAAAATGACCATTATACC
Found at i:89556721 original size:28 final size:28
Alignment explanation
Indices: 89556678--89556765 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 28
89556668 GGAGGAAGCA
89556678 TTCTGGTGGCTCTGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCACAAATATCTGT
*
89556706 TTCTGGTGGC-CTTGCCACAATTATCTGT
1 TTCTGGTGGCTC-TGCCACAAATATCTGT
* * * *
89556734 ATCTGGTGACTCAGTCAC-AATATCTG-
1 TTCTGGTGGCTCTGCCACAAATATCTGT
89556760 TTCTGG
1 TTCTGG
89556766 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
26 5 0.10
27 8 0.16
28 37 0.73
29 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (28 bp):
TTCTGGTGGCTCTGCCACAAATATCTGT
Found at i:89563389 original size:15 final size:15
Alignment explanation
Indices: 89563357--89563385 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
89563347 ATTTTCTATG
89563357 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
89563372 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
89563386 ATTTTAATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:89566196 original size:56 final size:55
Alignment explanation
Indices: 89566097--89566201 Score: 142
Period size: 56 Copynumber: 1.9 Consensus size: 55
89566087 GACCATGCCA
* * *
89566097 TCGATATATGTGTGCAGTAAGACCACGTTTTATACGTTGGCATCGATATGTGACT
1 TCGATATATGTGTGCAGTAAGACCACGTCTAAGACGTTGGCATCGATATGTGACT
89566152 TCGATATATGTGTGCAAGTAAGACC-CTGTCTAAGACAG-TGGCATCGATAT
1 TCGATATATGTGTGC-AGTAAGACCAC-GTCTAAGAC-GTTGGCATCGATAT
89566202 ATGATTACAT
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
55 16 0.36
56 27 0.61
57 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31
Consensus pattern (55 bp):
TCGATATATGTGTGCAGTAAGACCACGTCTAAGACGTTGGCATCGATATGTGACT
Found at i:89576277 original size:39 final size:39
Alignment explanation
Indices: 89576234--89576320 Score: 138
Period size: 39 Copynumber: 2.2 Consensus size: 39
89576224 CCGGCAATTA
* *
89576234 GCCTGCTAGGTATAAACCTGACCTTATCACCGACACGAG
1 GCCTGCTAGCTATAAACCTGAACTTATCACCGACACGAG
* *
89576273 GCCTGCTAGCTATAAACCTGAATTTATCACCGGCACGAG
1 GCCTGCTAGCTATAAACCTGAACTTATCACCGACACGAG
89576312 GCCTGCTAG
1 GCCTGCTAG
89576321 ACATTAAGTC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 44 1.00
ACGTcount: A:0.26, C:0.30, G:0.22, T:0.22
Consensus pattern (39 bp):
GCCTGCTAGCTATAAACCTGAACTTATCACCGACACGAG
Found at i:89580627 original size:21 final size:19
Alignment explanation
Indices: 89580603--89580641 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
89580593 TTCTAACCCA
89580603 TAATAATTTTCATACAATTTT
1 TAATAATTTTC-TA-AATTTT
*
89580624 TAATGATTTTCTAAATTT
1 TAATAATTTTCTAAATTT
89580642 AAGACAGGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 2 0.12
21 10 0.59
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.54
Consensus pattern (19 bp):
TAATAATTTTCTAAATTTT
Found at i:89581835 original size:37 final size:37
Alignment explanation
Indices: 89581785--89581863 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
89581775 TTATTACGAA
** * * *
89581785 GTCTTACTTGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
89581822 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
89581859 GTCTT
1 GTCTT
89581864 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:89582156 original size:49 final size:47
Alignment explanation
Indices: 89581982--89582438 Score: 734
Period size: 47 Copynumber: 9.6 Consensus size: 47
89581972 CCCTTCGGGA
* * * * * *
89581982 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
89582029 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
89582076 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
89582123 CTTATCACATATATATACACTTTCACATTCATCACAACGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
89582172 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
89582219 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
89582268 CCTATCACATATATATACACTTTCATATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
89582317 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
89582364 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
89582411 CTTATCACATATATACACTTTCATATTC
1 CTTATCACATATATACACTTTCACATTC
89582439 GAATACTCAT
Statistics
Matches: 385, Mismatches: 21, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 247 0.64
49 138 0.36
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:89582182 original size:96 final size:94
Alignment explanation
Indices: 89581982--89582438 Score: 734
Period size: 96 Copynumber: 4.8 Consensus size: 94
89581972 CCCTTCGGGA
* * * * * * * *
89581982 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
89582047 TTTCACATTCATCACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
89582076 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
*
89582141 ACTTTCACATTCATCACAACGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
89582172 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
89582237 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
89582268 CCTATCACATATATATACACTTTCATATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
89582333 ACTTTCACATTCATCACATCGGCCATTAGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
*
89582364 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
89582429 TTTCATATTC
66 TTTCACATTC
89582439 GAATACTCAT
Statistics
Matches: 341, Mismatches: 18, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
94 112 0.33
96 183 0.54
98 46 0.13
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:89584974 original size:48 final size:48
Alignment explanation
Indices: 89584922--89585130 Score: 170
Period size: 48 Copynumber: 4.4 Consensus size: 48
89584912 CTAGACATGA
* * *
89584922 TCTTATACGGGACCTCATATTAATGCCAATGCCATATCCCAAATATGG
1 TCTTATACGGGATCTCATATCAATGCCGATGCCATATCCCAAATATGG
* * * * * * * *
89584970 TCTTACATGGGATTTCATA-CTGATGCTGATGCCATGTCCCAAACAAGG
1 TCTTATACGGGATCTCATATC-AATGCCGATGCCATATCCCAAATATGG
* * * *
89585018 TCATT-TACGGGATCTCTTATCAATGCTGATGCCATATTCCAGATATGG
1 TC-TTATACGGGATCTCATATCAATGCCGATGCCATATCCCAAATATGG
* * * * * ** *
89585066 CCTTACACGGAATCTCATCTCGATGCCGATTTCATATCCCAGATATGG
1 TCTTATACGGGATCTCATATCAATGCCGATGCCATATCCCAAATATGG
*
89585114 TCTTATATGGGATCTCA
1 TCTTATACGGGATCTCA
89585131 ATACTGACAT
Statistics
Matches: 122, Mismatches: 35, Indels: 8
0.74 0.21 0.05
Matches are distributed among these distances:
47 2 0.02
48 117 0.96
49 3 0.02
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.32
Consensus pattern (48 bp):
TCTTATACGGGATCTCATATCAATGCCGATGCCATATCCCAAATATGG
Found at i:89585106 original size:96 final size:96
Alignment explanation
Indices: 89584927--89585106 Score: 209
Period size: 96 Copynumber: 1.9 Consensus size: 96
89584917 CATGATCTTA
* * * * *
89584927 TACGGGACCTCATATTAATGCCAATGCCATATCCCAAATATGGTCTTACATGGGATTTCATACTG
1 TACGGGACCTCATATCAATGCCAATGCCATATCCCAAATATGGCCTTACACGGAATCTCATACTG
* *
89584992 ATGCTGATGCCATGTCCCAAACAAGGTCATT
66 ATGCCGATGCCATATCCCAAACAAGGTCATT
* * ** * *
89585023 TACGGGATCTCTTATCAATGCTGATGCCATATTCCAGATATGGCCTTACACGGAATCTCAT-CTC
1 TACGGGACCTCATATCAATGCCAATGCCATATCCCAAATATGGCCTTACACGGAATCTCATACT-
**
89585087 GATGCCGATTTCATATCCCA
65 GATGCCGATGCCATATCCCA
89585107 GATATGGTCT
Statistics
Matches: 68, Mismatches: 15, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
95 2 0.03
96 66 0.97
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (96 bp):
TACGGGACCTCATATCAATGCCAATGCCATATCCCAAATATGGCCTTACACGGAATCTCATACTG
ATGCCGATGCCATATCCCAAACAAGGTCATT
Found at i:89593856 original size:40 final size:40
Alignment explanation
Indices: 89593751--89593967 Score: 334
Period size: 40 Copynumber: 5.5 Consensus size: 40
89593741 CAGATGATAA
* *
89593751 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
89593791 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
89593830 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
89593870 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
89593910 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
89593950 -CTGGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
89593968 TACTTGGTTT
Statistics
Matches: 167, Mismatches: 7, Indels: 7
0.92 0.04 0.04
Matches are distributed among these distances:
39 53 0.32
40 114 0.68
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:89593920 original size:80 final size:80
Alignment explanation
Indices: 89593747--89593967 Score: 342
Period size: 79 Copynumber: 2.8 Consensus size: 80
89593737 TATTCAGATG
* *
89593747 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAG-CCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-TCCGGGCTAAGTCCCGAAGGC
89593810 ATTTGTGCGAGTTACT
65 ATTTGTGCGAGTTACT
*
89593826 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
89593891 TTTGTGCGAGTTACT
66 TTTGTGCGAGTTACT
* * *
89593906 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT-CTGGCTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTCCCGAAGG
89593968 TACTTGGTTT
Statistics
Matches: 132, Mismatches: 7, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
79 67 0.51
80 65 0.49
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCGAGTTACT
Found at i:89595628 original size:40 final size:40
Alignment explanation
Indices: 89595573--89595870 Score: 458
Period size: 40 Copynumber: 7.5 Consensus size: 40
89595563 CGGATGATAA
* *
89595573 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
89595613 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
89595653 CCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
89595693 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
89595733 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
89595773 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
89595813 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGTTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
89595853 -CTGGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
89595871 TACTTGGTTT
Statistics
Matches: 240, Mismatches: 16, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
39 18 0.08
40 221 0.92
41 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:89601787 original size:40 final size:40
Alignment explanation
Indices: 89601742--89601821 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
89601732 GGGGGAGAGT
* * *
89601742 TGTGACAGCCCTAAATTGACCCTAGTCGGAAAGTGGTTTC
1 TGTGACACCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTC
89601782 TGTGACACCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTC
1 TGTGACACCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTC
89601822 GGGACCGCTA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (40 bp):
TGTGACACCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTC
Found at i:89602731 original size:13 final size:13
Alignment explanation
Indices: 89602713--89602737 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
89602703 TAATGGTATA
89602713 TTGAATCCATGAT
1 TTGAATCCATGAT
89602726 TTGAATCCATGA
1 TTGAATCCATGA
89602738 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:89604279 original size:47 final size:47
Alignment explanation
Indices: 89604220--89604367 Score: 269
Period size: 47 Copynumber: 3.1 Consensus size: 47
89604210 TATTTGAATA
* *
89604220 AATGCGAAAGTGTATATATGTGATCAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
89604267 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
89604314 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
89604361 AATGTGA
1 AATGTGA
89604368 GTCGATGTGA
Statistics
Matches: 98, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 98 1.00
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:89604385 original size:66 final size:67
Alignment explanation
Indices: 89604304--89604435 Score: 239
Period size: 68 Copynumber: 2.0 Consensus size: 67
89604294 GCCTAATGGC
89604304 CGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
1 CGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
89604368 GT
66 GT
*
89604370 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 CGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
89604435 A
65 A
89604436 AAGTGTATAT
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
66 22 0.35
68 41 0.65
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (67 bp):
CGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
GT
Found at i:89604425 original size:49 final size:49
Alignment explanation
Indices: 89604370--89604501 Score: 166
Period size: 46 Copynumber: 2.8 Consensus size: 49
89604360 GAATGTGAGT
*
89604370 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGC
* * *
89604419 CGATGTGATGAATGTGAAAGTG--TATATATGTGA-CAGGGCGAGTGGC
1 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGC
* * *
89604465 CAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
89604502 TCCCGAAGGG
Statistics
Matches: 72, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
46 34 0.47
47 14 0.19
48 2 0.03
49 22 0.31
ACGTcount: A:0.33, C:0.08, G:0.32, T:0.28
Consensus pattern (49 bp):
CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGC
Found at i:89605988 original size:40 final size:40
Alignment explanation
Indices: 89605942--89606514 Score: 704
Period size: 40 Copynumber: 14.6 Consensus size: 40
89605932 GAGTGAAATG
* *
89605942 TCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
89605982 TCCGGGCTAAG-TCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
89606021 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
*
89606061 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGAATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTG-ATGTA
89606102 TCC-GGCTAAGTTCC--AGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
*
89606139 TCC-GGCTAAAGTTTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCT-AAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
* * * *
89606179 TCCGGACTAAGTT-CGAAGAGCATTC---ATAGAGATATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
* *** * * * *
89606215 TCCGTGCTAAACCCCGAAGAGCATTTGTGCTGGTGTTATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
* * * * *
89606255 TCCGGGCT-AGGTCTCGAAGAGCAATCATGCTGGTGACGTA
1 TCCGGGCTAAGTTC-CGAAGAGCATTCGTGCTAGTGATGTA
* *
89606295 TCCGGACTAAGTTCCGAAGAACATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
* *
89606335 TCCGGACTAAGTTCTGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
*
89606375 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
* *
89606415 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
* * * * * *
89606455 TCCGTGCTAA--CCCGAAGAGAATTTGTGCT-GTGTTATA
1 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
* *
89606492 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTTCCGAAGAGCA
89606515 ATCATGCTGG
Statistics
Matches: 470, Mismatches: 49, Indels: 29
0.86 0.09 0.05
Matches are distributed among these distances:
36 16 0.03
37 38 0.08
38 40 0.09
39 62 0.13
40 299 0.64
41 15 0.03
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:89606512 original size:314 final size:312
Alignment explanation
Indices: 89605942--89606519 Score: 867
Period size: 314 Copynumber: 1.8 Consensus size: 312
89605932 GAGTGAAATG
* * * * *
89605942 TCCGGGCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTC
1 TCCGGGCTAAATCCCGAAGAGCAATCATGCTAGTGACGTATCCGGACTAAGTCCGAAGAACATTC
*
89606007 GTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAG
66 GTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAG
*
89606072 TTCCGAAGAGCATTCGTGCTAGTGAATGTATCCGGCTAAGTTCCAGAGCATTCGTGCTAGTGATG
131 TTCCGAAGAGCATTCGTGCTAGTGAATGTATCCGGCTAAGTTCCAGAGCATTCGTGCTAGTGATA
** * * * *
89606137 TATCCGGCTAAAGTTTCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCGAAGAGCAT
196 TATCCGGCTAAAG-CCCGAAGAGAATTCGTGCTAGTGATATATCCGGACTAAGTCCGAAGAGCAA
89606202 TCATAGAGATATATCCGTGCTAAACCCCGAAGAGCATTTGTGCTGGTGTTATA
260 TCATAGAGATATATCCGTGCTAAACCCCGAAGAGCATTTGTGCTGGTGTTATA
** * *
89606255 TCCGGGCTAGGTCTCGAAGAGCAATCATGCTGGTGACGTATCCGGACTAAGTTCCGAAGAACATT
1 TCCGGGCTAAATCCCGAAGAGCAATCATGCTAGTGACGTATCCGGACTAAG-TCCGAAGAACATT
*
89606320 CGTGCTAGTGATGTATCCGGACTAAGTTCTGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAA
65 CGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAA
89606385 GTTCCGAAGAGCATTCGTGCTAGTG-ATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGT
130 GTTCCGAAGAGCATTCGTGCTAGTGAATGTATCCGG-CTAAGTTCC--AGAGCATTCGTGCTAGT
* * * *
89606449 GATATATCCGTGCT-AA-CCCGAAGAGAATTTGTGCT-GTGTTATATCCGGGCTAGGTCCCGAAG
192 GATATATCCG-GCTAAAGCCCGAAGAGAATTCGTGCTAGTGATATATCCGGACTAAGT-CCGAAG
89606511 AGCAATCAT
255 AGCAATCAT
89606520 GCTGGTGACG
Statistics
Matches: 237, Mismatches: 22, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
313 69 0.29
314 137 0.58
316 28 0.12
317 3 0.01
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (312 bp):
TCCGGGCTAAATCCCGAAGAGCAATCATGCTAGTGACGTATCCGGACTAAGTCCGAAGAACATTC
GTGCTAGTGATGTATCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAG
TTCCGAAGAGCATTCGTGCTAGTGAATGTATCCGGCTAAGTTCCAGAGCATTCGTGCTAGTGATA
TATCCGGCTAAAGCCCGAAGAGAATTCGTGCTAGTGATATATCCGGACTAAGTCCGAAGAGCAAT
CATAGAGATATATCCGTGCTAAACCCCGAAGAGCATTTGTGCTGGTGTTATA
Found at i:89608178 original size:20 final size:20
Alignment explanation
Indices: 89608132--89608179 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
89608122 ATATGCCTTT
* *
89608132 TATATTAATAAATTAAATGT
1 TATATGAATAAATTAAATGA
*
89608152 TAAATGAATAAA-TAATATGA
1 TATATGAATAAATTAA-ATGA
89608172 TATATGAA
1 TATATGAA
89608180 CTTATATTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 3 0.13
20 20 0.87
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (20 bp):
TATATGAATAAATTAAATGA
Found at i:89608692 original size:13 final size:13
Alignment explanation
Indices: 89608674--89608698 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
89608664 TAATGGTATA
89608674 TTGAATCCATGAT
1 TTGAATCCATGAT
89608687 TTGAATCCATGA
1 TTGAATCCATGA
89608699 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:89610272 original size:46 final size:47
Alignment explanation
Indices: 89610160--89610419 Score: 401
Period size: 46 Copynumber: 5.7 Consensus size: 47
89610150 GAAGTATATT
* * *
89610160 TGATAAATGCGAAAGTGTATATATGTGATCAGGCCTAATGG-CGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
89610206 TGATGAATGTG-AAGTGTATATATGTGATAAGGCCTAATGGCCGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
*
89610252 TGATGAATGTGAAAGT-TATATATGTGATAAGGCCTAATAG-CGATG
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
89610297 TGATGAATGTGAAAGTGT-TAATATGTGATAAGGCCTAATGGCCGATG
1 TGATGAATGTGAAAGTGTAT-ATATGTGATAAGGCCTAATGGCCGATG
89610344 TGATGAATGTGAAAGTGTATATATGTGAT-AGGCC-AATGGCCGA-G
1 TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
* *
89610388 TGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TGATGAATGTGAAAGTGTATATATGTGATAAG
89610420 TCCGAAGGGC
Statistics
Matches: 200, Mismatches: 7, Indels: 15
0.90 0.03 0.07
Matches are distributed among these distances:
44 28 0.14
45 61 0.31
46 74 0.37
47 36 0.18
48 1 0.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATG
Found at i:89610275 original size:91 final size:92
Alignment explanation
Indices: 89610160--89610419 Score: 404
Period size: 91 Copynumber: 2.8 Consensus size: 92
89610150 GAAGTATATT
* *
89610160 TGATAAATGCGAAAGTGTATATATGTGATCAGGCCTAATGGCGATGTGATGAATGTG-AAGTGTA
1 TGATGAATGTGAAAGTGTATATATGTGAT-AGGCCTAATGGCGATGTGATGAATGTGAAAGTGTA
89610224 TATATGTGATAAGGCCTAATGGCCGATG
65 TATATGTGATAAGGCCTAATGGCCGATG
*
89610252 TGATGAATGTGAAAGT-TATATATGTGATAAGGCCTAATAGCGATGTGATGAATGTGAAAGTGT-
1 TGATGAATGTGAAAGTGTATATATGTGAT-AGGCCTAATGGCGATGTGATGAATGTGAAAGTGTA
89610315 TAATATGTGATAAGGCCTAATGGCCGATG
65 T-ATATGTGATAAGGCCTAATGGCCGATG
*
89610344 TGATGAATGTGAAAGTGTATATATGTGATAGGCC-AATGGCCGA-GTGATGGATGTGAAAGTGTA
1 TGATGAATGTGAAAGTGTATATATGTGATAGGCCTAATGG-CGATGTGATGAATGTGAAAGTGTA
*
89610407 TAAATGTGATAAG
65 TATATGTGATAAG
89610420 TCCGAAGGGC
Statistics
Matches: 156, Mismatches: 7, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
91 72 0.46
92 72 0.46
93 12 0.08
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (92 bp):
TGATGAATGTGAAAGTGTATATATGTGATAGGCCTAATGGCGATGTGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCCTAATGGCCGATG
Found at i:89612273 original size:40 final size:40
Alignment explanation
Indices: 89612228--89612307 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
89612218 GGGGGAGAGT
* * *
89612228 TGTGACAGCCCTAAATTGACCCTAGTCGGAAAGTGGTTTC
1 TGTGACACCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTC
89612268 TGTGACACCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTC
1 TGTGACACCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTC
89612308 GGGACCGCTA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (40 bp):
TGTGACACCCCTAAAGTGACCCTAGTCGGAAAGCGGTTTC
Found at i:89613212 original size:13 final size:13
Alignment explanation
Indices: 89613194--89613220 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
89613184 GTAATGGTAT
89613194 ATTTGAATCCATG
1 ATTTGAATCCATG
89613207 ATTTGAATCCATG
1 ATTTGAATCCATG
89613220 A
1 A
89613221 AAATTTAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (13 bp):
ATTTGAATCCATG
Found at i:89614774 original size:47 final size:47
Alignment explanation
Indices: 89614705--89614851 Score: 260
Period size: 47 Copynumber: 3.1 Consensus size: 47
89614695 ATATTTGAAT
* *
89614705 AATGCGAAAGTGTA-ATATGTGATCAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
89614751 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
89614798 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
89614845 AATGTGA
1 AATGTGA
89614852 GTCGATGTGA
Statistics
Matches: 97, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
46 13 0.13
47 84 0.87
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:89614869 original size:66 final size:67
Alignment explanation
Indices: 89614788--89614919 Score: 239
Period size: 68 Copynumber: 2.0 Consensus size: 67
89614778 GCCTAATGGC
89614788 CGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
1 CGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
89614852 GT
66 GT
*
89614854 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 CGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
89614919 A
65 A
89614920 AAGTGTATAT
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
66 22 0.35
68 41 0.65
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (67 bp):
CGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
GT
Found at i:89614909 original size:49 final size:49
Alignment explanation
Indices: 89614854--89614986 Score: 175
Period size: 47 Copynumber: 2.8 Consensus size: 49
89614844 GAATGTGAGT
*
89614854 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGC
* * *
89614903 CGATGTGATGAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGC
1 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGC
* * *
89614950 CAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
89614987 TCCCGAAGGG
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
47 48 0.66
48 1 0.01
49 24 0.33
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.28
Consensus pattern (49 bp):
CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGC
Found at i:89614958 original size:115 final size:113
Alignment explanation
Indices: 89614741--89614966 Score: 362
Period size: 115 Copynumber: 2.0 Consensus size: 113
89614731 GCCTAATGGC
89614741 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * *
89614806 AGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAGT
66 AGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAGT
89614854 CGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
1 CGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
* * * *
89614919 AAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGA
64 AAAGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGA
89614967 AAGTGTATAA
Statistics
Matches: 103, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
113 22 0.21
115 81 0.79
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (113 bp):
CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
AGTGTATATATGTGACAAGGCCGAATAGCCAACGTGATGAATGTGAGT
Found at i:89616485 original size:38 final size:40
Alignment explanation
Indices: 89616443--89616556 Score: 173
Period size: 38 Copynumber: 2.9 Consensus size: 40
89616433 GGCTAAATCT
89616443 CGAAGAGCATTCGTGCTAGTGATGT-T-CGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
89616481 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
1 CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
*
89616521 CG-ACAGCATTCG-GCTAGTGCCATGTATCCGGACTAA
1 CGAAGAGCATTCGTGCTAGTG--ATGTATCCGGACTAA
89616557 TCTCTGACAA
Statistics
Matches: 71, Mismatches: 1, Indels: 6
0.91 0.01 0.08
Matches are distributed among these distances:
38 32 0.45
39 10 0.14
40 29 0.41
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTC
Found at i:89616570 original size:38 final size:38
Alignment explanation
Indices: 89616450--89616586 Score: 142
Period size: 40 Copynumber: 3.6 Consensus size: 38
89616440 TCTCGAAGAG
*
89616450 CATTCGTGCTAGTGATGT-T-CGGACTAAGTTCCGAAGA
1 CATTCGTGCTAGTGATGTATCCGGACTAAGTTCCG-ACA
89616487 GCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGACA
1 -CATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGACA
*
89616526 GCATTCG-GCTAGTGCCATGTATCCGGACTAA-TCTCTGACA
1 -CATTCGTGCTAGTG--ATGTATCCGGACTAAGT-TCCGACA
*
89616566 -ATTCGTTC-AGTGATAGTATCC
1 CATTCGTGCTAGTGAT-GTATCC
89616587 TCGAGGAGAG
Statistics
Matches: 89, Mismatches: 3, Indels: 15
0.83 0.03 0.14
Matches are distributed among these distances:
36 2 0.02
37 6 0.07
38 34 0.38
39 12 0.13
40 35 0.39
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.30
Consensus pattern (38 bp):
CATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGACA
Found at i:89618757 original size:20 final size:20
Alignment explanation
Indices: 89618711--89618758 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
89618701 ATATGCCTTT
* *
89618711 TATATTAATAAATTAAATGT
1 TATATGAATAAATTAAATGA
*
89618731 TAAATGAATAAA-TAATATGA
1 TATATGAATAAATTAA-ATGA
89618751 TATATGAA
1 TATATGAA
89618759 CTTATATTAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 3 0.13
20 20 0.87
ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38
Consensus pattern (20 bp):
TATATGAATAAATTAAATGA
Found at i:89619266 original size:13 final size:13
Alignment explanation
Indices: 89619248--89619272 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
89619238 TAATGGTATA
89619248 TTGAATCCATGAT
1 TTGAATCCATGAT
89619261 TTGAATCCATGA
1 TTGAATCCATGA
89619273 AAATTAGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:89620928 original size:95 final size:96
Alignment explanation
Indices: 89620760--89621023 Score: 455
Period size: 95 Copynumber: 2.8 Consensus size: 96
89620750 ATATTTGGTA
* * *
89620760 AATGCGAAAGTGTATATATGTGATCAGGCCTAATGGCCGATGTGATGAATGTGACAGTGTA-ATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
89620824 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
89620855 AATGTGAAAGTGTATATATGTGATAAGG-CTAATAGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
89620919 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
89620950 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGGATGTGAAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
89621014 -ATGTGATAAG
66 TATGTGATAAG
89621024 TCCCGAAGGG
Statistics
Matches: 161, Mismatches: 6, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
94 40 0.25
95 89 0.55
96 32 0.20
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:89620984 original size:47 final size:47
Alignment explanation
Indices: 89620760--89621023 Score: 440
Period size: 47 Copynumber: 5.6 Consensus size: 47
89620750 ATATTTGGTA
* *
89620760 AATGCGAAAGTGTATATATGTGATCAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
89620807 AATGTGACAGTGTAATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGT-ATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
89620855 AATGTGAAAGTGTATATATGTGATAAGG-CTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
89620901 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
89620950 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
89620997 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
89621024 TCCCGAAGGG
Statistics
Matches: 205, Mismatches: 8, Indels: 8
0.93 0.04 0.04
Matches are distributed among these distances:
46 29 0.14
47 86 0.42
48 61 0.30
49 29 0.14
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:89623995 original size:40 final size:39
Alignment explanation
Indices: 89623796--89623995 Score: 257
Period size: 40 Copynumber: 5.1 Consensus size: 39
89623786 TATTCGGATG
*
89623796 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACT
* *
89623836 A-ATTCCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACT
89623876 AT-ACCGGGCTAAGT-CCGAAGGCATTTGTGCGAGT-CT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACT
*
89623912 ATATCCGGGCTAAGT-CCGAAGGAGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAA-G-GCATTTGTGCGAG-TACT
*
89623953 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTA-CT
89623993 ATA
1 ATA
89623996 TCGCTAAATC
Statistics
Matches: 142, Mismatches: 8, Indels: 20
0.84 0.05 0.12
Matches are distributed among these distances:
36 4 0.03
37 17 0.12
38 20 0.14
39 26 0.18
40 52 0.37
41 18 0.13
42 5 0.04
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (39 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACT
Found at i:89624010 original size:79 final size:79
Alignment explanation
Indices: 89623796--89624012 Score: 288
Period size: 79 Copynumber: 2.8 Consensus size: 79
89623786 TATTCGGATG
* *
89623796 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGCCCCGAA-GG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTG-CTATA-TCC-GGCTAAGTCCCGAAGGG
89623859 CATTTGTGCGAGTTACT
63 CATTTGTGCGAGTTACT
89623876 AT-ACCGGGCTAAGT-CCGAAGGCATTTGTGCGAGT-CTATATCCGGGCTAAGT-CCGAAGGAGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTATATCC-GGCTAAGTCCCGAAGG-GC
89623937 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* *
89623953 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAGCTATAT-C-GCTAAATCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-GCTATATCCGGCTAAGTCCCGAAGG
89624013 TATTGGTTTG
Statistics
Matches: 125, Mismatches: 4, Indels: 17
0.86 0.03 0.12
Matches are distributed among these distances:
75 5 0.04
76 15 0.12
77 21 0.17
78 37 0.30
79 38 0.30
80 3 0.02
81 6 0.05
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTATATCCGGCTAAGTCCCGAAGGGCAT
TTGTGCGAGTTACT
Found at i:89625727 original size:79 final size:73
Alignment explanation
Indices: 89625597--89625850 Score: 255
Period size: 77 Copynumber: 3.3 Consensus size: 73
89625587 GGATGATAAC
* * * *
89625597 CGGGCTAAGTCCGAGGCATTTGTGCTAGTGACTA-ATTTCGGCTAAACCCCGAAGGCATTTGTGC
1 CGGGCTAAGTCCGAGGCATTTCTGCGAGT--CTATA-TCCGGCT-AAGCCCGAAGGCATTTGTGC
89625661 GAGTTACTATAT
62 GAGTTACTATAT
*
89625673 CGGGCTAAAGTCCGA-GCGATTAGTGTGCGATGT-TACGTAGTCCGGCTAAGCCCGAAGGCATTT
1 CGGGCT-AAGTCCGAGGC-ATT--TCTGCGA-GTCTA--TA-TCCGGCTAAGCCCGAAGGCATTT
*
89625736 GTGCGAGTTCCTATAT
58 GTGCGAGTTACTATAT
89625752 CCTGGGCTAAGTCCGAAGGCATTTCTGCGAGTCTATATCCGGGCT-AGTCCCGAAGGCATTTGTG
1 -C-GGGCTAAGTCCG-AGGCATTTCTGCGAGTCTATATCC-GGCTAAG-CCCGAAGGCATTTGTG
*
89625816 CGAGTTACTATAA
61 CGAGTTACTATAT
89625829 CGGGCTAAGTCCGAAGGCATTT
1 CGGGCTAAGTCCG-AGGCATTT
89625851 GAAGCGATGT
Statistics
Matches: 155, Mismatches: 8, Indels: 31
0.80 0.04 0.16
Matches are distributed among these distances:
75 21 0.14
76 14 0.09
77 46 0.30
78 2 0.01
79 44 0.28
80 17 0.11
81 9 0.06
82 2 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (73 bp):
CGGGCTAAGTCCGAGGCATTTCTGCGAGTCTATATCCGGCTAAGCCCGAAGGCATTTGTGCGAGT
TACTATAT
Found at i:89625762 original size:40 final size:39
Alignment explanation
Indices: 89625596--89625851 Score: 230
Period size: 38 Copynumber: 6.6 Consensus size: 39
89625586 CGGATGATAA
* * *
89625596 CCGGGCTAAGTCCG-AGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
89625634 TC-GGCTAAACCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCT-AAGCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
89625673 -CGGGCTAAAGTCCG-A-GCGATTAGTGTGCGATGTTACGTA-GT
1 CCGGGCT-AAGCCCGAAGGC-ATT--TGTGCGA-GTTAC-TATAT
*
89625714 CC-GGCTAAGCCCGAAGGCATTTGTGCGAGTTCCTATAT
1 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
89625752 CCTGGGCTAAGTCCGAAGGCATTTCTGCGAG-T-CTATAT
1 CC-GGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAT
89625790 CCGGGCT-AGTCCCGAAGGCATTTGTGCGAGTTACTATA-
1 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
* *
89625828 ACGGGCTAAGTCCGAAGGCATTTG
1 CCGGGCTAAGCCCGAAGGCATTTG
89625852 AAGCGATGTA
Statistics
Matches: 182, Mismatches: 17, Indels: 38
0.77 0.07 0.16
Matches are distributed among these distances:
36 2 0.01
37 31 0.17
38 46 0.25
39 45 0.25
40 39 0.21
41 14 0.08
42 5 0.03
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (39 bp):
CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:89625843 original size:38 final size:38
Alignment explanation
Indices: 89625592--89625851 Score: 214
Period size: 39 Copynumber: 6.7 Consensus size: 38
89625582 TATTCGGATG
* *
89625592 ATAACCGGGCTAAGTCCG-AGGCATTTGTGCTAGTGACT
1 ATAA-CGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACT
** **
89625630 AATTTC-GGCTAAACCCCGAAGGCATTTGTGCGAGTTACT
1 -ATAACGGGCT-AAGTCCGAAGGCATTTGTGCGAGTTACT
*
89625669 ATATCGGGCTAAAGTCCG-A-GCGATTAGTGTGCGATGTTACGT
1 ATAACGGGCT-AAGTCCGAAGGC-ATT--TGTGCGA-GTTAC-T
* * *
89625711 AGT--CCGGCTAAGCCCGAAGGCATTTGTGCGAGTTCCT
1 A-TAACGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACT
* *
89625748 ATATCCTGGGCTAAGTCCGAAGGCATTTCTGCGAG-T-CT
1 ATA-AC-GGGCTAAGTCCGAAGGCATTTGTGCGAGTTACT
*
89625786 ATATCCGGGCT-AGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACT
89625825 ATAACGGGCTAAGTCCGAAGGCATTTG
1 ATAACGGGCTAAGTCCGAAGGCATTTG
89625852 AAGCGATGTA
Statistics
Matches: 185, Mismatches: 17, Indels: 39
0.77 0.07 0.16
Matches are distributed among these distances:
36 4 0.02
37 31 0.17
38 46 0.25
39 47 0.25
40 38 0.21
41 14 0.08
42 4 0.02
43 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (38 bp):
ATAACGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACT
Found at i:89630375 original size:79 final size:81
Alignment explanation
Indices: 89630239--89630423 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
89630229 TTGAATGATG
*
89630239 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
89630303 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
89630318 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
89630380 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
89630398 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
89630424 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:89630437 original size:40 final size:40
Alignment explanation
Indices: 89630240--89630423 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
89630230 TGAATGATGT
* * * *
89630240 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
89630280 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
89630320 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
89630358 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
89630399 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
89630424 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:89630445 original size:79 final size:79
Alignment explanation
Indices: 89630240--89630456 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
89630230 TGAATGATGT
** * * * **
89630240 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
89630303 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
89630320 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
89630385 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
89630399 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
89630457 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:89632782 original size:40 final size:40
Alignment explanation
Indices: 89632727--89632944 Score: 298
Period size: 40 Copynumber: 5.5 Consensus size: 40
89632717 CGGATGATAA
* *
89632727 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
89632767 CCGGGCTAAGCCCCGAAGGCATTTGTGCGAGTTACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
89632807 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
89632847 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
89632887 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* * *
89632927 -CTGACTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
89632945 TACTTGGTTT
Statistics
Matches: 160, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 17 0.11
40 142 0.89
41 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:89637771 original size:55 final size:54
Alignment explanation
Indices: 89637684--89637937 Score: 220
Period size: 55 Copynumber: 4.8 Consensus size: 54
89637674 ATTAGGGTTT
*
89637684 AAGGATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGG-AATTGGTAA-GTTTCATAAGGC
* * * * *
89637739 AAGGATATCATGAAAGACCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTC-ATAAGGC
* * * * *
89637794 GAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTAGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCATAAGGC
* * * * * *
89637847 AAGGATACCGTGTCAGACCATGTCGAGACATGGAAATGGTAAGCTTC---A---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCATAAGGC
* * * *
89637895 AAGGATACCACGTAAGACCATGACAAGTCATGGAAATGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAG
89637938 GTACCCGTAT
Statistics
Matches: 164, Mismatches: 30, Indels: 17
0.78 0.14 0.08
Matches are distributed among these distances:
48 37 0.23
51 1 0.01
52 4 0.02
53 40 0.24
54 13 0.08
55 65 0.40
56 4 0.02
ACGTcount: A:0.35, C:0.17, G:0.26, T:0.21
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGAATTGGTAAGTTTCATAAGGC
Found at i:89642518 original size:26 final size:27
Alignment explanation
Indices: 89642489--89642542 Score: 67
Period size: 26 Copynumber: 2.0 Consensus size: 27
89642479 AGAAGTGCCG
*
89642489 AATATTCACTGA-TCACAAAAG-TTTGA
1 AATATTCAATGACTCA-AAAAGATTTGA
*
89642515 AATATTTAATGACTCAAAAAGATTTGA
1 AATATTCAATGACTCAAAAAGATTTGA
89642542 A
1 A
89642543 CTTGAGGCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 15 0.62
27 9 0.38
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.31
Consensus pattern (27 bp):
AATATTCAATGACTCAAAAAGATTTGA
Found at i:89644486 original size:31 final size:31
Alignment explanation
Indices: 89644450--89644511 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
89644440 TAATTAGACC
89644450 ATTATACTAGTTTGGACAAAAATACCCAAAG
1 ATTATACTAGTTTGGACAAAAATACCCAAAG
*
89644481 ATTATACTAGTTTGGACAAAAATACCTAAAG
1 ATTATACTAGTTTGGACAAAAATACCCAAAG
89644512 GAAGATAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.45, C:0.15, G:0.13, T:0.27
Consensus pattern (31 bp):
ATTATACTAGTTTGGACAAAAATACCCAAAG
Found at i:89644845 original size:31 final size:31
Alignment explanation
Indices: 89644800--89644864 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
89644790 CATAGGTGAA
*
89644800 ATGTGTTTACTTTGATGTTTTATGGTAGAAT
1 ATGTGGTTACTTTGATGTTTTATGGTAGAAT
*
89644831 ATGTGGTTATTTTGATGTTTTATGGTAGAAT
1 ATGTGGTTACTTTGATGTTTTATGGTAGAAT
89644862 ATG
1 ATG
89644865 AAGCTTGAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.23, C:0.02, G:0.25, T:0.51
Consensus pattern (31 bp):
ATGTGGTTACTTTGATGTTTTATGGTAGAAT
Found at i:89645531 original size:55 final size:54
Alignment explanation
Indices: 89645446--89645698 Score: 263
Period size: 55 Copynumber: 4.8 Consensus size: 54
89645436 TAAGGTTTAT
* *
89645446 GGATACCATGTAAGACCATGCCAAGGCATGGCCATTGGTAAGGTTTC-TAAGGCAA
1 GGATACCATGTAAGACCATGTCAAGACATGG-CATTGGTAA-GTTTCATAAGGCAA
* *
89645501 GGATATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGCAAA
1 GGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTC-ATAAGGC-AA
* * * *
89645557 GG-TCCCGTGTAAGACCATGCCAAGGCATGGCATTGGTAAG-TTCATAAGGCAA
1 GGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCATAAGGCAA
* * * *
89645609 GGATACCATGTCAGACCATGTCGAGACATGGAAATGGTAAGTTTC--AA---AA
1 GGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCATAAGGCAA
* * *
89645658 GGATACCACGTAAGACCATGAT-AAGTCATGGCAATGGTAAG
1 GGATACCATGTAAGACCATG-TCAAGACATGGCATTGGTAAG
89645699 GTACTCGTGT
Statistics
Matches: 169, Mismatches: 23, Indels: 18
0.80 0.11 0.09
Matches are distributed among these distances:
49 36 0.21
50 1 0.01
52 6 0.04
53 42 0.25
54 14 0.08
55 66 0.39
56 4 0.02
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.23
Consensus pattern (54 bp):
GGATACCATGTAAGACCATGTCAAGACATGGCATTGGTAAGTTTCATAAGGCAA
Found at i:89645650 original size:108 final size:110
Alignment explanation
Indices: 89645454--89645653 Score: 316
Period size: 108 Copynumber: 1.8 Consensus size: 110
89645444 ATGGATACCA
*
89645454 TGTAAGACCATGCCAAGGCATGGCCATTGGTAAGGTTTCTAAGGCAAGGATATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCCATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACCA
* *
89645519 TGTCAAGACATGGCATTGATAAGTTTCTATAAGGCAAAGGTCCCG
66 TGTCAAGACATGGAAATGATAAGTTTCTATAAGGCAAAGGTCCCG
*
89645564 TGTAAGACCATGCCAAGGCATGG-CATTGGTAA-G-TTCATAAGGCAAGGATACCATGTCAGACC
1 TGTAAGACCATGCCAAGGCATGGCCATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAGACC
* *
89645626 ATGTCGAGACATGGAAATGGTAAGTTTC
65 ATGTCAAGACATGGAAATGATAAGTTTC
89645654 AAAAGGATAC
Statistics
Matches: 83, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.58
109 9 0.11
110 23 0.28
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCCATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGACCA
TGTCAAGACATGGAAATGATAAGTTTCTATAAGGCAAAGGTCCCG
Found at i:89648095 original size:21 final size:21
Alignment explanation
Indices: 89648070--89648110 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
89648060 ACCACGTCTA
89648070 TTACCATTTCCACCCTTAGCC
1 TTACCATTTCCACCCTTAGCC
* *
89648091 TTACCGTTTTCACCCTTAGC
1 TTACCATTTCCACCCTTAGC
89648111 TTGACCAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.39, G:0.07, T:0.37
Consensus pattern (21 bp):
TTACCATTTCCACCCTTAGCC
Found at i:89650234 original size:18 final size:18
Alignment explanation
Indices: 89650181--89650476 Score: 154
Period size: 18 Copynumber: 16.1 Consensus size: 18
89650171 TCATTAACAC
* *
89650181 TCAG-AACAATTATTTAT
1 TCAGTAACAATCAATTAT
* **
89650198 TCAGTAACAGTCAGCTAT
1 TCAGTAACAATCAATTAT
89650216 TCAGTAACAATCAATTAT
1 TCAGTAACAATCAATTAT
* * * *
89650234 TCA-AATATAACCAGTTAT
1 TCAGTA-ACAATCAATTAT
*
89650252 TCAGTATCGATCAATTGATCAGTTAT
1 TCAGTA---A-CAA----TCAATTAT
*
89650278 CCAGTAACAATCAATTAT
1 TCAGTAACAATCAATTAT
*
89650296 TCAGTAA-AATTAGA-TAT
1 TCAGTAACAATCA-ATTAT
*
89650313 TCAGTAACAATTAAGTTAT
1 TCAGTAACAATCAA-TTAT
*
89650332 TCAGTAACAGTC-ATTCAT
1 TCAGTAACAATCAATT-AT
* *
89650350 TCAGTGACAATCAGTTAT
1 TCAGTAACAATCAATTAT
**
89650368 TCAGTAATGATCAATTAT
1 TCAGTAACAATCAATTAT
*** *
89650386 TCAGTAATGTTCAGTTAT
1 TCAGTAACAATCAATTAT
**
89650404 TCAGTAACAGCCTAA-TAT
1 TCAGTAACAATC-AATTAT
* *
89650422 CCAGTAACAGTCAATTAT
1 TCAGTAACAATCAATTAT
* *
89650440 CCGGTAACAATCAATTAT
1 TCAGTAACAATCAATTAT
* * *
89650458 TTAGTAATAATCAGTTAT
1 TCAGTAACAATCAATTAT
89650476 T
1 T
89650477 TTATACCTTT
Statistics
Matches: 217, Mismatches: 44, Indels: 35
0.73 0.15 0.12
Matches are distributed among these distances:
17 24 0.11
18 157 0.72
19 17 0.08
21 1 0.00
22 5 0.02
23 1 0.00
26 12 0.06
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (18 bp):
TCAGTAACAATCAATTAT
Found at i:89650315 original size:17 final size:19
Alignment explanation
Indices: 89650279--89650340 Score: 76
Period size: 19 Copynumber: 3.4 Consensus size: 19
89650269 ATCAGTTATC
* *
89650279 CAGTAACAATCAA-TTATT
1 CAGTAACAATTAAGATATT
89650297 CAGTAA-AATT-AGATATT
1 CAGTAACAATTAAGATATT
*
89650314 CAGTAACAATTAAGTTATT
1 CAGTAACAATTAAGATATT
89650333 CAGTAACA
1 CAGTAACA
89650341 GTCATTCATT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
16 1 0.03
17 13 0.34
18 10 0.26
19 14 0.37
ACGTcount: A:0.45, C:0.13, G:0.10, T:0.32
Consensus pattern (19 bp):
CAGTAACAATTAAGATATT
Found at i:89650336 original size:62 final size:62
Alignment explanation
Indices: 89650208--89650323 Score: 144
Period size: 62 Copynumber: 1.9 Consensus size: 62
89650198 TCAGTAACAG
* * * * * *
89650208 TCAGCTATTCAGTAACAATCAATTATTCAAATATAACCAGTTATTCAGTATCGATCAATTGA
1 TCAGTTATCCAGTAACAATCAATTATTCAAATAAAACCAGATATTCAGTAACAATCAATTGA
* **
89650270 TCAGTTATCCAGTAACAATCAATTATTC-AGTAAAATTAGATATTCAGTAACAAT
1 TCAGTTATCCAGTAACAATCAATTATTCAAATAAAACCAGATATTCAGTAACAAT
89650324 TAAGTTATTC
Statistics
Matches: 45, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
61 19 0.42
62 26 0.58
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (62 bp):
TCAGTTATCCAGTAACAATCAATTATTCAAATAAAACCAGATATTCAGTAACAATCAATTGA
Found at i:89650453 original size:72 final size:70
Alignment explanation
Indices: 89650275--89650476 Score: 208
Period size: 72 Copynumber: 2.8 Consensus size: 70
89650265 ATTGATCAGT
* * *
89650275 TATCCAGTAACAATCAATTATTCAGTAAAATTAGA-TATTCAGTAACAATTAAGTTATTCAGTAA
1 TATCCAGTAACAATCAATTATTCAGTAAAATCA-ATTATTCAGTAA-TATTCAGTTATTCAGTAA
* *
89650339 CAGTCAT
64 CAGCCAA
* * * * *
89650346 TCATTCAGTGACAATCAGTTATTCAGTAATGATCAATTATTCAGTAATGTTCAGTTATTCAGTAA
1 T-ATCCAGTAACAATCAATTATTCAGTAA-AATCAATTATTCAGTAATATTCAGTTATTCAGTAA
89650411 CAGCCTAA
64 CAGCC-AA
* * * * *
89650419 TATCCAGTAACAGTCAATTATCCGGTAACAATCAATTATTTAGTAATAATCAGTTATT
1 TATCCAGTAACAATCAATTATTCAGTAA-AATCAATTATTCAGTAATATTCAGTTATT
89650477 TTATACCTTT
Statistics
Matches: 106, Mismatches: 21, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
71 1 0.01
72 90 0.85
73 15 0.14
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.35
Consensus pattern (70 bp):
TATCCAGTAACAATCAATTATTCAGTAAAATCAATTATTCAGTAATATTCAGTTATTCAGTAACA
GCCAA
Found at i:89650849 original size:16 final size:16
Alignment explanation
Indices: 89650820--89650853 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
89650810 TAATTCACTT
89650820 TTCAATTTTCAATTAA
1 TTCAATTTTCAATTAA
89650836 TTCATATTTT-AATTAA
1 TTCA-ATTTTCAATTAA
89650852 TT
1 TT
89650854 AACTATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.56
Consensus pattern (16 bp):
TTCAATTTTCAATTAA
Found at i:89652319 original size:16 final size:16
Alignment explanation
Indices: 89652298--89652337 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 16
89652288 TTCTTTCTCC
89652298 TTTCTTTTTCTTTTT-G
1 TTTCTTTTT-TTTTTCG
89652314 TTTCTTTTTTTTTTCG
1 TTTCTTTTTTTTTTCG
89652330 TTTACTTT
1 TTT-CTTT
89652338 ACTATATATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.23
16 13 0.59
17 4 0.18
ACGTcount: A:0.03, C:0.12, G:0.05, T:0.80
Consensus pattern (16 bp):
TTTCTTTTTTTTTTCG
Found at i:89654897 original size:28 final size:27
Alignment explanation
Indices: 89654822--89654897 Score: 84
Period size: 27 Copynumber: 2.8 Consensus size: 27
89654812 CTACGCCACA
* *
89654822 ATTATCTG-ATCTAGTGGCTCTGCCAT
1 ATTATCTGTATCTGGTGGCTCTACCAT
*
89654848 ATATATCCGT-TCTGGTGGCTCTACCAT
1 AT-TATCTGTATCTGGTGGCTCTACCAT
*
89654875 GATTATCTGTATCTGGTGACTCT
1 -ATTATCTGTATCTGGTGGCTCT
89654898 GTCACATTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
26 2 0.05
27 26 0.63
28 13 0.32
ACGTcount: A:0.18, C:0.22, G:0.20, T:0.39
Consensus pattern (27 bp):
ATTATCTGTATCTGGTGGCTCTACCAT
Found at i:89662224 original size:16 final size:15
Alignment explanation
Indices: 89662198--89662229 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
89662188 ACTAGATCGG
89662198 CAAAAGCCGAAAAGC
1 CAAAAGCCGAAAAGC
89662213 CAAAATGCCGAAAAGC
1 CAAAA-GCCGAAAAGC
89662229 C
1 C
89662230 GGTATTTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.50, C:0.28, G:0.19, T:0.03
Consensus pattern (15 bp):
CAAAAGCCGAAAAGC
Found at i:89662686 original size:27 final size:26
Alignment explanation
Indices: 89662645--89662756 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
89662635 AGGAAGCGTC
*
89662645 CTGGTGGCTAC-GCCACAATTATTTGAT
1 CTGGTGGCT-CTGCCAC-ATTATCTGAT
*
89662672 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
89662699 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
89662727 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
89662753 CTGG
1 CTGG
89662757 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
26 8 0.11
27 50 0.67
28 17 0.23
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:89662749 original size:54 final size:54
Alignment explanation
Indices: 89662645--89662756 Score: 156
Period size: 54 Copynumber: 2.1 Consensus size: 54
89662635 AGGAAGCGTC
* *
89662645 CTGGTGGCTACGCCACAATTATTTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTACGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* *
89662699 CTGGTGGCT-CTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTAC-GCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
89662753 CTGG
1 CTGG
89662757 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
53 1 0.02
54 33 0.63
55 18 0.35
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (54 bp):
CTGGTGGCTACGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:89667584 original size:18 final size:18
Alignment explanation
Indices: 89667561--89667843 Score: 153
Period size: 18 Copynumber: 15.3 Consensus size: 18
89667551 GAATAATTAT
89667561 TTATTCAGTAACAATCAG
1 TTATTCAGTAACAATCAG
* *
89667579 TTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAG
* * *
89667597 TTATTCA-AATATAACCAG
1 TTATTCAGTA-ACAATCAG
*
89667615 TTATTCAGTATCGATCAATTGATCGG
1 TTATTCAGTA---A-C-A---ATCAG
* * *
89667641 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAATCAG
89667659 TTATTCAGTAA-AATCAG
1 TTATTCAGTAACAATCAG
*
89667676 ATT-TTCAGTAACAATTAAG
1 -TTATTCAGTAACAA-TCAG
*
89667695 TTATTCAGTAACAGTCA-
1 TTATTCAGTAACAATCAG
**
89667712 TTCATTCAGCGACAATCAG
1 TT-ATTCAGTAACAATCAG
** *
89667731 TTATTCAGTAATGATCAA
1 TTATTCAGTAACAATCAG
* * *
89667749 TTATTCAGTAATATTTAG
1 TTATTCAGTAACAATCAG
*
89667767 TTATTCAGTAACAGTCTA-
1 TTATTCAGTAACAATC-AG
* * *
89667785 ATATCCAGTAACAATCAA
1 TTATTCAGTAACAATCAG
* * * *
89667803 TTATCCAGTAACAGTAAA
1 TTATTCAGTAACAATCAG
* *
89667821 TTATTCAGTAATAATTAG
1 TTATTCAGTAACAATCAG
89667839 TTATT
1 TTATT
89667844 TTATACCTTT
Statistics
Matches: 200, Mismatches: 48, Indels: 34
0.71 0.17 0.12
Matches are distributed among these distances:
17 16 0.08
18 150 0.75
19 17 0.09
21 2 0.01
22 1 0.00
23 2 0.01
26 12 0.06
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (18 bp):
TTATTCAGTAACAATCAG
Found at i:89667603 original size:36 final size:36
Alignment explanation
Indices: 89667561--89667843 Score: 189
Period size: 36 Copynumber: 7.6 Consensus size: 36
89667551 GAATAATTAT
*
89667561 TTATTCAGTAACAATCAGTTATTCGGTAACAATCAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* * * * *
89667597 TTATTCA-AATATAACCAGTTATTCAGTATCGATCAA
1 TTATTCAGTA-ACAATCAGTTATTCAGTAACAATCAA
* *
89667633 TTGATCGGTTATCCAGTAACAGTCAATTATTCAGTAA-AATCAGA
1 TT-A-----T-T-CAGTAACAATCAGTTATTCAGTAACAATCA-A
* *
89667677 TT-TTCAGTAACAATTAAGTTATTCAGTAACAGTC-A
1 TTATTCAGTAACAA-TCAGTTATTCAGTAACAATCAA
** **
89667712 TTCATTCAGCGACAATCAGTTATTCAGTAATGATCAA
1 TT-ATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* * * *
89667749 TTATTCAGTAATATTTAGTTATTCAGTAACAGTCTAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATC-AA
* * * * *
89667786 -TATCCAGTAACAATCAATTATCCAGTAACAGTAAA
1 TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
* *
89667821 TTATTCAGTAATAATTAGTTATT
1 TTATTCAGTAACAATCAGTTATT
89667844 TTATACCTTT
Statistics
Matches: 186, Mismatches: 43, Indels: 36
0.70 0.16 0.14
Matches are distributed among these distances:
35 14 0.08
36 127 0.68
37 19 0.10
42 1 0.01
43 5 0.03
44 19 0.10
45 1 0.01
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (36 bp):
TTATTCAGTAACAATCAGTTATTCAGTAACAATCAA
Found at i:89667776 original size:72 final size:71
Alignment explanation
Indices: 89667642--89667843 Score: 219
Period size: 72 Copynumber: 2.8 Consensus size: 71
89667632 ATTGATCGGT
* * * *
89667642 TATCCAGTAACAGTCAATTATTCAGTAAAATCAGATT-TTCAGTAACAATTAAGTTATTCAGTAA
1 TATCCAGCAACAATCAATTATTCAGTAAAATCA-ATTATTCAGTAA-TATTTAGTTATTCAGTAA
*
89667706 CAGTC-AT
64 CAGTCTAA
* * * *
89667713 TCATTCAGCGACAATCAGTTATTCAGTAATGATCAATTATTCAGTAATATTTAGTTATTCAGTAA
1 T-ATCCAGCAACAATCAATTATTCAGTAA-AATCAATTATTCAGTAATATTTAGTTATTCAGTAA
89667778 CAGTCTAA
64 CAGTCTAA
* * * * *
89667786 TATCCAGTAACAATCAATTATCCAGTAACAGTAAATTATTCAGTAATAATTAGTTATT
1 TATCCAGCAACAATCAATTATTCAGTAA-AATCAATTATTCAGTAATATTTAGTTATT
89667844 TTATACCTTT
Statistics
Matches: 108, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
71 1 0.01
72 93 0.86
73 14 0.13
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.36
Consensus pattern (71 bp):
TATCCAGCAACAATCAATTATTCAGTAAAATCAATTATTCAGTAATATTTAGTTATTCAGTAACA
GTCTAA
Found at i:89668216 original size:16 final size:16
Alignment explanation
Indices: 89668187--89668220 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
89668177 TAATTCACTT
89668187 TTCAATTTTCAATTAA
1 TTCAATTTTCAATTAA
89668203 TTCATATTTT-AATTAA
1 TTCA-ATTTTCAATTAA
89668219 TT
1 TT
89668221 AACTATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.56
Consensus pattern (16 bp):
TTCAATTTTCAATTAA
Found at i:89676042 original size:25 final size:25
Alignment explanation
Indices: 89676008--89676058 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
89675998 AGCTAACGAC
89676008 GTTAAACAATGGCGCTTAATGGGAG
1 GTTAAACAATGGCGCTTAATGGGAG
89676033 GTTAAACAATGGCGCTTAATGGGAG
1 GTTAAACAATGGCGCTTAATGGGAG
89676058 G
1 G
89676059 CAACCCATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.31, C:0.12, G:0.33, T:0.24
Consensus pattern (25 bp):
GTTAAACAATGGCGCTTAATGGGAG
Found at i:89678936 original size:28 final size:28
Alignment explanation
Indices: 89678904--89678958 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
89678894 CAAGGCTGAC
89678904 TTTT-ATCT-CTTGATTTCAATTTCAATCT
1 TTTTAATCTACTTG-TTT-AATTTCAATCT
*
89678932 TTTTAATTTACTTGTTTAATTTCAATC
1 TTTTAATCTACTTGTTTAATTTCAATC
89678959 ATTTACTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 14 0.58
29 6 0.25
30 4 0.17
ACGTcount: A:0.24, C:0.15, G:0.04, T:0.58
Consensus pattern (28 bp):
TTTTAATCTACTTGTTTAATTTCAATCT
Found at i:89679542 original size:17 final size:16
Alignment explanation
Indices: 89679507--89679546 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 16
89679497 AACCCCCAAT
89679507 TTTCCTTATTTTTTTC
1 TTTCCTTATTTTTTTC
89679523 TTTCCTT-TTTTTCCTTC
1 TTTCCTTATTTTT--TTC
89679540 TTTCCTT
1 TTTCCTT
89679547 CCCTTATTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 5 0.23
16 7 0.32
17 10 0.45
ACGTcount: A:0.03, C:0.25, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTCCTTATTTTTTTC
Found at i:89691373 original size:96 final size:96
Alignment explanation
Indices: 89691192--89691373 Score: 240
Period size: 96 Copynumber: 1.9 Consensus size: 96
89691182 CTCATAACGG
* *
89691192 TGCCGATGCCATGTCCAAGACATGGTCTTATACGGGGCCTCATATCGATGCCAATGCCATATCCC
1 TGCCGATACCATGTCCAAGACATGGTCTTATACGGGACCTCATATCGATGCCAATGCCATATCCC
** * *
89691257 AGTTATGGTTTTACATGGGATTTTAGACTGA
66 AAATATGGTCTTACACGGGATTTTAGACTGA
* * ***
89691288 TGCCGATACCATGTCCAAGA-AGTGGTCTTATACGGGATCTCTTATCGATGTTGATGCCATATCC
1 TGCCGATACCATGTCCAAGACA-TGGTCTTATACGGGACCTCATATCGATGCCAATGCCATATCC
*
89691352 CAAATATGGTCTTATACGGGAT
65 CAAATATGGTCTTACACGGGAT
89691374 CTCAATACTC
Statistics
Matches: 73, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
95 1 0.01
96 72 0.99
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.31
Consensus pattern (96 bp):
TGCCGATACCATGTCCAAGACATGGTCTTATACGGGACCTCATATCGATGCCAATGCCATATCCC
AAATATGGTCTTACACGGGATTTTAGACTGA
Found at i:89694451 original size:32 final size:33
Alignment explanation
Indices: 89694401--89694484 Score: 97
Period size: 32 Copynumber: 2.6 Consensus size: 33
89694391 ATAAAAATTA
89694401 TATTTAAAA-TA-AATAAATGAAA-ATAAATATCT
1 TATTTAAAATTATAATAAATGAAACAT--ATATCT
*
89694433 T-TTTAAAATTATAA-AAATGAAACATATATTT
1 TATTTAAAATTATAATAAATGAAACATATATCT
89694464 TATTTAAAATTATTAATAAAT
1 TATTTAAAATTA-TAATAAAT
89694485 AGAAGTTGAG
Statistics
Matches: 45, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
31 13 0.29
32 21 0.47
33 7 0.16
34 4 0.09
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (33 bp):
TATTTAAAATTATAATAAATGAAACATATATCT
Found at i:89698866 original size:24 final size:24
Alignment explanation
Indices: 89698837--89698885 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
89698827 TCCGAGCTCG
89698837 TTGAGTTGAGTCCGAGTTCACTTA
1 TTGAGTTGAGTCCGAGTTCACTTA
89698861 TTGAGTTGAGTCCGAGTTCACTTA
1 TTGAGTTGAGTCCGAGTTCACTTA
89698885 T
1 T
89698886 GGATGCGAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.39
Consensus pattern (24 bp):
TTGAGTTGAGTCCGAGTTCACTTA
Found at i:89700336 original size:28 final size:28
Alignment explanation
Indices: 89700297--89700357 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
89700287 ATTTTATTTA
89700297 AAATAAATGTATAATTTT-TCTCAAAAAT
1 AAATAAATGTATAATTTTAT-TCAAAAAT
*
89700325 AAATAAATGTATAATTTTATTTAAAAAT
1 AAATAAATGTATAATTTTATTCAAAAAT
89700353 AAATA
1 AAATA
89700358 TTTTAAAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 30 0.97
29 1 0.03
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.39
Consensus pattern (28 bp):
AAATAAATGTATAATTTTATTCAAAAAT
Found at i:89700356 original size:24 final size:24
Alignment explanation
Indices: 89700284--89700356 Score: 78
Period size: 28 Copynumber: 2.9 Consensus size: 24
89700274 TGAATAAAAA
89700284 ATAATTTTATTT-AAAATAAATGT
1 ATAATTTTATTTAAAAATAAATGT
*
89700307 ATAATTTT-TCTCAAAAATAAATAAATGT
1 ATAATTTTAT-T---TAA-AAATAAATGT
89700335 ATAATTTTATTTAAAAATAAAT
1 ATAATTTTATTTAAAAATAAAT
89700357 ATTTTAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
22 1 0.02
23 9 0.22
24 8 0.20
25 2 0.05
27 1 0.02
28 19 0.46
29 1 0.02
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (24 bp):
ATAATTTTATTTAAAAATAAATGT
Found at i:89700374 original size:28 final size:28
Alignment explanation
Indices: 89700297--89700370 Score: 80
Period size: 28 Copynumber: 2.7 Consensus size: 28
89700287 ATTTTATTTA
* *
89700297 AAATAAATGTATAATTTT-TCTCAAAAAT
1 AAATAAATGTAAAATTTTAT-TTAAAAAT
*
89700325 AAATAAATGTATAATTTTATTTAAAAAT
1 AAATAAATGTAAAATTTTATTTAAAAAT
* *
89700353 AAAT-ATTTTAAAATTTTA
1 AAATAAATGTAAAATTTTA
89700371 ATTTTGATAT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
27 11 0.27
28 29 0.71
29 1 0.02
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (28 bp):
AAATAAATGTAAAATTTTATTTAAAAAT
Found at i:89700817 original size:8 final size:7
Alignment explanation
Indices: 89700800--89700834 Score: 52
Period size: 7 Copynumber: 4.9 Consensus size: 7
89700790 TCTTAATTTT
89700800 AAAATTA
1 AAAATTA
89700807 AAAATTA
1 AAAATTA
89700814 AAAATTAA
1 AAAATT-A
*
89700822 AAAATGA
1 AAAATTA
89700829 AAAATT
1 AAAATT
89700835 TGGCAGGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 19 0.76
8 6 0.24
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (7 bp):
AAAATTA
Found at i:89700819 original size:14 final size:15
Alignment explanation
Indices: 89700800--89700834 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
89700790 TCTTAATTTT
*
89700800 AAAATT-AAAAATTA
1 AAAATTAAAAAATGA
89700814 AAAATTAAAAAATGA
1 AAAATTAAAAAATGA
89700829 AAAATT
1 AAAATT
89700835 TGGCAGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.32
15 13 0.68
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (15 bp):
AAAATTAAAAAATGA
Found at i:89704272 original size:11 final size:11
Alignment explanation
Indices: 89704256--89704280 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
89704246 GAAGTCAAAA
89704256 ATTATTATTTT
1 ATTATTATTTT
89704267 ATTATTATTTT
1 ATTATTATTTT
89704278 ATT
1 ATT
89704281 TTCTATAGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
ATTATTATTTT
Found at i:89705505 original size:17 final size:17
Alignment explanation
Indices: 89705483--89705515 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
89705473 TGTTTTATAT
*
89705483 TGAATTATTATGAATTG
1 TGAATTATTATAAATTG
89705500 TGAATTATTATAAATT
1 TGAATTATTATAAATT
89705516 TACATGATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.12, T:0.48
Consensus pattern (17 bp):
TGAATTATTATAAATTG
Found at i:89715440 original size:42 final size:42
Alignment explanation
Indices: 89715342--89715499 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 42
89715332 AACAAGTACA
* * **
89715342 ATGCCGATGTCCCGGAC-GTGGTCTTACATGTATCTCAATATCG
1 ATGCCGATGTCCCAGACAG-GGTCTTACACGTAAATCAATA-CG
**
89715385 ATGCCTCTGTCCCAGACAGGGTCTTACACG-AAATCAGATACG
1 ATGCCGATGTCCCAGACAGGGTCTTACACGTAAATCA-ATACG
* *
89715427 ATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTCAAT-CG
1 ATGCCGATGTCCCAGACAGGGTCTTACACGTAAA--TCAATACG
* * *
89715470 AGGCCTG-TGTCCCAGGCACGGTCTTACACG
1 ATGCC-GATGTCCCAGACAGGGTCTTACACG
89715500 ATGTCTCAGA
Statistics
Matches: 95, Mismatches: 14, Indels: 12
0.79 0.12 0.10
Matches are distributed among these distances:
42 32 0.34
43 56 0.59
44 4 0.04
45 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (42 bp):
ATGCCGATGTCCCAGACAGGGTCTTACACGTAAATCAATACG
Found at i:89715493 original size:85 final size:85
Alignment explanation
Indices: 89715342--89715500 Score: 214
Period size: 85 Copynumber: 1.9 Consensus size: 85
89715332 AACAAGTACA
* * * * *
89715342 ATGCCGATGTCCCGGACGTGGTCTTACATGTATCTCAATATCGATGCCTCTGTCCCAGACAGGGT
1 ATGCCGATGTCCCAGACATGGTCTTACACGTATCTCAATATCGAGGCCTCTGTCCCAGACACGGT
89715407 CTTACACGAAATCAGATACG
66 CTTACACGAAATCAGATACG
* * *
89715427 ATGCCGATGTCCCAGACATGGTCTTATACGTAAATCTC-A-ATCGAGGCCTGTGTCCCAGGCACG
1 ATGCCGATGTCCCAGACATGGTCTTACACGT--ATCTCAATATCGAGGCCTCTGTCCCAGACACG
89715490 GTCTTACACGA
64 GTCTTACACGA
89715501 TGTCTCAGAC
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
85 58 0.91
86 1 0.02
87 5 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (85 bp):
ATGCCGATGTCCCAGACATGGTCTTACACGTATCTCAATATCGAGGCCTCTGTCCCAGACACGGT
CTTACACGAAATCAGATACG
Found at i:89726348 original size:35 final size:35
Alignment explanation
Indices: 89726302--89726385 Score: 105
Period size: 35 Copynumber: 2.4 Consensus size: 35
89726292 ACATTTGTCG
* * * *
89726302 GTTTATTCGACTAGCACTGGGCACAACTTCCATTA
1 GTTTATCCGACTAGCACTAGACACAACTTCCATGA
**
89726337 GTTTATCCGACTAGCACTAGACACAACTTTTATGA
1 GTTTATCCGACTAGCACTAGACACAACTTCCATGA
*
89726372 GTTTATCTGACTAG
1 GTTTATCCGACTAG
89726386 TGCTAGGCAC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 42 1.00
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.33
Consensus pattern (35 bp):
GTTTATCCGACTAGCACTAGACACAACTTCCATGA
Found at i:89726413 original size:34 final size:34
Alignment explanation
Indices: 89726373--89726469 Score: 106
Period size: 35 Copynumber: 2.8 Consensus size: 34
89726363 CTTTTATGAG
89726373 TTTATCTGACTAGTGCTAGGCACACATTCATCGA
1 TTTATCTGACTAGTGCTAGGCACACATTCATCGA
* * *
89726407 TTTATCTGACTAGTGCTAGCCGCAAACA-TCGTTGA
1 TTTATCTGACTAGTGCTAG--GCACACATTCATCGA
** * *
89726442 TTTATCAAACTAGAGCTAGGCTCACATT
1 TTTATCTGACTAGTGCTAGGCACACATT
89726470 TAATATCGTT
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
33 5 0.10
34 20 0.38
35 21 0.40
36 6 0.12
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.32
Consensus pattern (34 bp):
TTTATCTGACTAGTGCTAGGCACACATTCATCGA
Found at i:89727878 original size:24 final size:24
Alignment explanation
Indices: 89727838--89727904 Score: 98
Period size: 24 Copynumber: 2.8 Consensus size: 24
89727828 TACACCATGT
*
89727838 GTGTCACATGGCCGTGTGACAGCTC
1 GTGTCCCA-GGCCGTGTGACAGCTC
89727863 GTGTCCCAGGCCGTGTGACAGCTC
1 GTGTCCCAGGCCGTGTGACAGCTC
* *
89727887 GTATCCCAGGCCATGTGA
1 GTGTCCCAGGCCGTGTGA
89727905 TCCATAAATT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
24 32 0.82
25 7 0.18
ACGTcount: A:0.16, C:0.30, G:0.31, T:0.22
Consensus pattern (24 bp):
GTGTCCCAGGCCGTGTGACAGCTC
Found at i:89729616 original size:39 final size:39
Alignment explanation
Indices: 89729536--89729643 Score: 162
Period size: 39 Copynumber: 2.7 Consensus size: 39
89729526 GAACGTAACT
* ** *
89729536 TGCGAACCTTAAGTCCGGATTATAACTCCAGTATATAGCC
1 TGCGGACCTTAAGTCCGGA-TATATTTCCAGCATATAGCC
*
89729576 TGTGGACCTTAAGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACCTTAAGTCCGGATATATTTCCAGCATATAGCC
89729615 TGCGGACCTTAAGTCCGGATATATTTCCA
1 TGCGGACCTTAAGTCCGGATATATTTCCA
89729644 AATATCATGC
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 45 0.73
40 17 0.27
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (39 bp):
TGCGGACCTTAAGTCCGGATATATTTCCAGCATATAGCC
Found at i:89736919 original size:43 final size:42
Alignment explanation
Indices: 89736853--89736965 Score: 131
Period size: 43 Copynumber: 2.7 Consensus size: 42
89736843 AGCTCATACA
** * * *
89736853 ATGCCAACATCATAAATGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACATCCCAGATGTGGTCTTACATGAAATCAAATA-AG
89736896 ATGCC-ACTATCCCAGATAG-GGTCTTACATGAAATCAAATAAG
1 ATGCCAAC-ATCCCAGAT-GTGGTCTTACATGAAATCAAATAAG
*
89736938 ATGCCAACGTCCCAGATGTGGTCTTACA
1 ATGCCAACATCCCAGATGTGGTCTTACA
89736966 CGATAACACA
Statistics
Matches: 60, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
41 1 0.02
42 25 0.42
43 33 0.55
44 1 0.02
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.27
Consensus pattern (42 bp):
ATGCCAACATCCCAGATGTGGTCTTACATGAAATCAAATAAG
Found at i:89738076 original size:13 final size:13
Alignment explanation
Indices: 89738058--89738082 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
89738048 ACAAATGATA
89738058 AAATTTTCACACG
1 AAATTTTCACACG
89738071 AAATTTTCACAC
1 AAATTTTCACAC
89738083 ATGTCATTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:89740335 original size:41 final size:43
Alignment explanation
Indices: 89740279--89740361 Score: 125
Period size: 41 Copynumber: 2.0 Consensus size: 43
89740269 GAAGATCTAT
*
89740279 TGGAGAAAGCCTTAGATCTTGACCCTTTAGAGGATGAAGAAGA
1 TGGAGAAAGCCTTAGATCTTGACCCTTTAGAGGATAAAGAAGA
* *
89740322 TGGAG-AA-CCTTAGATCTTGGCCCTTTGGAGGATAAAGAAG
1 TGGAGAAAGCCTTAGATCTTGACCCTTTAGAGGATAAAGAAG
89740362 GTGAAAAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 30 0.81
42 2 0.05
43 5 0.14
ACGTcount: A:0.33, C:0.14, G:0.29, T:0.24
Consensus pattern (43 bp):
TGGAGAAAGCCTTAGATCTTGACCCTTTAGAGGATAAAGAAGA
Found at i:89747841 original size:37 final size:37
Alignment explanation
Indices: 89747800--89747873 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
89747790 AGAAGGTAAA
89747800 GAATTACTCCAAGGAAGCCATTGATCCATCTCAGAAG
1 GAATTACTCCAAGGAAGCCATTGATCCATCTCAGAAG
89747837 GAATTACTCCAAGGAAGCCATTGATCCATCTCAGAAG
1 GAATTACTCCAAGGAAGCCATTGATCCATCTCAGAAG
89747874 CTGGATCCAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.35, C:0.24, G:0.19, T:0.22
Consensus pattern (37 bp):
GAATTACTCCAAGGAAGCCATTGATCCATCTCAGAAG
Found at i:89753972 original size:6 final size:6
Alignment explanation
Indices: 89753961--89753998 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
89753951 TCCTCCTATC
**
89753961 TTTTTA TTTTTA TTTTTA TTTTTA TTTCAA TTTTTA TT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TT
89753999 CTCTTTTGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:89756428 original size:14 final size:14
Alignment explanation
Indices: 89756409--89756435 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
89756399 TAAATACTTG
89756409 ATTTGTTCTTAATT
1 ATTTGTTCTTAATT
89756423 ATTTGTTCTTAAT
1 ATTTGTTCTTAAT
89756436 GCTTGAGTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.63
Consensus pattern (14 bp):
ATTTGTTCTTAATT
Found at i:89767343 original size:41 final size:41
Alignment explanation
Indices: 89767292--89767370 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
89767282 AAAAACTTCG
* * * *
89767292 TGACCTTTAGCGGCGCTTTCCCTAAAAACGCCGCTAAAAAA
1 TGACCTTTAGCGACGCTTTCCCCAAAAACACCACTAAAAAA
89767333 TGACCTTTAGCGACGCTTTCCCCAAAAACACCACTAAA
1 TGACCTTTAGCGACGCTTTCCCCAAAAACACCACTAAA
89767371 GACCATATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.33, C:0.32, G:0.14, T:0.22
Consensus pattern (41 bp):
TGACCTTTAGCGACGCTTTCCCCAAAAACACCACTAAAAAA
Found at i:89769782 original size:30 final size:30
Alignment explanation
Indices: 89769746--89769810 Score: 130
Period size: 30 Copynumber: 2.2 Consensus size: 30
89769736 GACTCTTAAA
89769746 GATAAGAACAGTAAATAAAGATTTGGAAAT
1 GATAAGAACAGTAAATAAAGATTTGGAAAT
89769776 GATAAGAACAGTAAATAAAGATTTGGAAAT
1 GATAAGAACAGTAAATAAAGATTTGGAAAT
89769806 GATAA
1 GATAA
89769811 ATTCTGTAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.54, C:0.03, G:0.20, T:0.23
Consensus pattern (30 bp):
GATAAGAACAGTAAATAAAGATTTGGAAAT
Found at i:89772525 original size:21 final size:22
Alignment explanation
Indices: 89772473--89772568 Score: 58
Period size: 22 Copynumber: 4.5 Consensus size: 22
89772463 ATAACTCATA
*
89772473 AAACCCTAAACCCCTAACCTCT
1 AAACCATAAACCCCTAACCTCT
* * * *
89772495 AAATCTTAAACCCC-AGCCTTT
1 AAACCATAAACCCCTAACCTCT
*
89772516 AAACCATAAA-CCATAATCC-CT
1 AAACCATAAACCCCTAA-CCTCT
*
89772537 AAACCCAT-AACCCATAACC-CAT
1 AAA-CCATAAACCCCTAACCTC-T
*
89772559 AAACCTTAAA
1 AAACCATAAA
89772569 ATAGTAACTC
Statistics
Matches: 58, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
20 2 0.03
21 26 0.45
22 30 0.52
ACGTcount: A:0.43, C:0.36, G:0.01, T:0.20
Consensus pattern (22 bp):
AAACCATAAACCCCTAACCTCT
Found at i:89772527 original size:7 final size:7
Alignment explanation
Indices: 89772515--89772568 Score: 54
Period size: 7 Copynumber: 7.6 Consensus size: 7
89772505 CCCCAGCCTT
89772515 TAAACCA
1 TAAACCA
89772522 TAAACCA
1 TAAACCA
* *
89772529 TAATCCC
1 TAAACCA
89772536 TAAACCCA
1 TAAA-CCA
*
89772544 TAACCCA
1 TAAACCA
*
89772551 TAACCCA
1 TAAACCA
*
89772558 TAAACCT
1 TAAACCA
89772565 TAAA
1 TAAA
89772569 ATAGTAACTC
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
7 34 0.87
8 5 0.13
ACGTcount: A:0.48, C:0.33, G:0.00, T:0.19
Consensus pattern (7 bp):
TAAACCA
Found at i:89772551 original size:22 final size:22
Alignment explanation
Indices: 89772515--89772563 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
89772505 CCCCAGCCTT
89772515 TAAA-CCATAAACCATAATCCC-
1 TAAACCCATAAACCATAA-CCCA
*
89772536 TAAACCCATAACCCATAACCCA
1 TAAACCCATAAACCATAACCCA
89772558 TAAACC
1 TAAACC
89772564 TTAAAATAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 7 0.28
22 18 0.72
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.16
Consensus pattern (22 bp):
TAAACCCATAAACCATAACCCA
Found at i:89773846 original size:16 final size:16
Alignment explanation
Indices: 89773822--89773893 Score: 62
Period size: 16 Copynumber: 4.7 Consensus size: 16
89773812 CATATGATGT
*
89773822 TTTTTGGGGTTTAGGG
1 TTTTAGGGGTTTAGGG
*
89773838 TTTTAGGGGTCATA--G
1 TTTTAGGGGT-TTAGGG
*
89773853 -TTTA-GTGTTTAGGG
1 TTTTAGGGGTTTAGGG
* *
89773867 GTTTAGGGGTTTAGTG
1 TTTTAGGGGTTTAGGG
89773883 TTTTAGGGGTT
1 TTTTAGGGGTT
89773894 ATAGATTAGT
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
12 2 0.05
13 3 0.07
14 5 0.11
15 5 0.11
16 27 0.61
17 2 0.05
ACGTcount: A:0.12, C:0.01, G:0.39, T:0.47
Consensus pattern (16 bp):
TTTTAGGGGTTTAGGG
Found at i:89773862 original size:22 final size:21
Alignment explanation
Indices: 89773830--89773907 Score: 77
Period size: 22 Copynumber: 3.5 Consensus size: 21
89773820 GTTTTTTGGG
*
89773830 GTTTAGGGTTTTAGGGGTCATA
1 GTTTAGTGTTTTAGGGGT-ATA
*
89773852 GTTTAGTG-TTTAGGGGTTTA
1 GTTTAGTGTTTTAGGGGTATA
89773872 GGGGTTTAGTGTTTTAGGGGTTATA
1 ---GTTTAGTGTTTTAGGGG-TATA
*
89773897 GATTAGTGTTT
1 GTTTAGTGTTT
89773908 ATTATTTTTG
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
20 2 0.04
21 9 0.19
22 17 0.36
23 8 0.17
24 8 0.17
25 3 0.06
ACGTcount: A:0.17, C:0.01, G:0.36, T:0.46
Consensus pattern (21 bp):
GTTTAGTGTTTTAGGGGTATA
Found at i:89773872 original size:8 final size:8
Alignment explanation
Indices: 89773859--89773893 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
89773849 ATAGTTTAGT
89773859 GTTTAGGG
1 GTTTAGGG
89773867 GTTTAGGG
1 GTTTAGGG
*
89773875 GTTTAGTG
1 GTTTAGGG
*
89773883 TTTTAGGG
1 GTTTAGGG
89773891 GTT
1 GTT
89773894 ATAGATTAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.11, C:0.00, G:0.43, T:0.46
Consensus pattern (8 bp):
GTTTAGGG
Found at i:89773937 original size:46 final size:45
Alignment explanation
Indices: 89773821--89773942 Score: 154
Period size: 45 Copynumber: 2.7 Consensus size: 45
89773811 CCATATGATG
* * * *
89773821 TTTTTTGGGGTTTAGGGTTTTAGGGGTCATAGTTTAGTGTTTAGG
1 TTTTTAGGGGTTTAGGGTTTTAGGGGTTATAGATTAGTGTTTAGA
** * *
89773866 GGTTTAGGGGTTTAGTGTTTTAGGGGTTATAGATTAGTGTTTATTA
1 TTTTTAGGGGTTTAGGGTTTTAGGGGTTATAGATTAGTGTTTA-GA
*
89773912 TTTTTGGGGGTTTAGGGTTTTAGGGGTTATA
1 TTTTTAGGGGTTTAGGGTTTTAGGGGTTATA
89773943 TGACTTTTAG
Statistics
Matches: 64, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
45 37 0.58
46 27 0.42
ACGTcount: A:0.16, C:0.01, G:0.35, T:0.48
Consensus pattern (45 bp):
TTTTTAGGGGTTTAGGGTTTTAGGGGTTATAGATTAGTGTTTAGA
Found at i:89774004 original size:41 final size:41
Alignment explanation
Indices: 89773947--89774043 Score: 124
Period size: 41 Copynumber: 2.4 Consensus size: 41
89773937 GTTATATGAC
* *
89773947 TTTTAGCAGCGTTTTACC-AACAGCGCCGCTAATACTCTAGT
1 TTTTAGCGGCGTTTTACCGAA-AGCGCAGCTAATACTCTAGT
* * *
89773988 TTTTAGCGGCGTTTTACCGAAAGTGCAGCTAATGCTGTAGT
1 TTTTAGCGGCGTTTTACCGAAAGCGCAGCTAATACTCTAGT
*
89774029 TTTTAGCGGTGTTTT
1 TTTTAGCGGCGTTTT
89774044 TGGTAAAACG
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
41 47 0.96
42 2 0.04
ACGTcount: A:0.21, C:0.20, G:0.23, T:0.37
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCGAAAGCGCAGCTAATACTCTAGT
Found at i:89774084 original size:40 final size:40
Alignment explanation
Indices: 89774027--89774114 Score: 140
Period size: 40 Copynumber: 2.2 Consensus size: 40
89774017 TAATGCTGTA
** *
89774027 GTTTTTAGCGGTGTTTTTGGTAAAACGCCGCTATTGCTCT
1 GTTTTTAGCGGCATTTTTGGTAAAACACCGCTATTGCTCT
89774067 GTTTTTAGCGGCATTTTTGGTAAAACACCGCTATTGCTCT
1 GTTTTTAGCGGCATTTTTGGTAAAACACCGCTATTGCTCT
89774107 GTGTTTTA
1 GT-TTTTA
89774115 CAATTTTTGC
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
40 39 0.89
41 5 0.11
ACGTcount: A:0.17, C:0.17, G:0.23, T:0.43
Consensus pattern (40 bp):
GTTTTTAGCGGCATTTTTGGTAAAACACCGCTATTGCTCT
Found at i:89778919 original size:7 final size:7
Alignment explanation
Indices: 89778896--89778939 Score: 61
Period size: 7 Copynumber: 6.1 Consensus size: 7
89778886 AAATATGACC
89778896 CCTTCATT
1 CCTTCA-T
*
89778904 CCCTCAT
1 CCTTCAT
*
89778911 CCATCAT
1 CCTTCAT
89778918 CCTTCAT
1 CCTTCAT
89778925 CCTTCAT
1 CCTTCAT
89778932 CCTTCAT
1 CCTTCAT
89778939 C
1 C
89778940 ATTCTCTCTT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
7 28 0.85
8 5 0.15
ACGTcount: A:0.16, C:0.45, G:0.00, T:0.39
Consensus pattern (7 bp):
CCTTCAT
Found at i:89778950 original size:14 final size:14
Alignment explanation
Indices: 89778914--89778943 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
89778904 CCCTCATCCA
*
89778914 TCATCCTTCATCCT
1 TCATCCTTCATCAT
89778928 TCATCCTTCATCAT
1 TCATCCTTCATCAT
89778942 TC
1 TC
89778944 TCTCTTCTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.40, G:0.00, T:0.43
Consensus pattern (14 bp):
TCATCCTTCATCAT
Found at i:89779491 original size:56 final size:56
Alignment explanation
Indices: 89779405--89779524 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
89779395 ACAAGGGATG
89779405 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
89779461 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
89779517 ATGGGCAA
1 ATGGGCAA
89779525 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:89780805 original size:40 final size:40
Alignment explanation
Indices: 89780653--89780798 Score: 181
Period size: 40 Copynumber: 3.6 Consensus size: 40
89780643 TCGAATGATG
* * * *
89780653 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
89780693 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
89780733 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
89780774 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
89780799 AACGAGTAGC
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
39 1 0.01
40 82 0.88
41 10 0.11
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:89780805 original size:80 final size:80
Alignment explanation
Indices: 89780653--89780821 Score: 193
Period size: 80 Copynumber: 2.1 Consensus size: 80
89780643 TCGAATGATG
* *
89780653 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
89780718 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * * * *
89780733 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
*
89780796 TTGAACGAGTAGCTATA
64 TTGAACGAGTAGCTAAA
89780813 TCC-GGTTAA
1 TCCGGGTTAA
89780822 ATTCTGAAGG
Statistics
Matches: 76, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
79 9 0.12
80 60 0.79
81 7 0.09
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTAGCTAAA
Found at i:89784221 original size:19 final size:19
Alignment explanation
Indices: 89784184--89784222 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
89784174 CGTTTACGTC
*
89784184 AATTATTTAAATATTAATT
1 AATTATTTAAATATAAATT
89784203 AATTATTCTAAAT-TAAATT
1 AATTATT-TAAATATAAATT
89784222 A
1 A
89784223 TCTTTATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (19 bp):
AATTATTTAAATATAAATT
Found at i:89784420 original size:5 final size:5
Alignment explanation
Indices: 89784410--89784469 Score: 120
Period size: 5 Copynumber: 12.0 Consensus size: 5
89784400 TATATAATCA
89784410 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT
89784460 ATAAT ATAAT
1 ATAAT ATAAT
89784470 TATTTTATTA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 55 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATAAT
Found at i:89784899 original size:16 final size:16
Alignment explanation
Indices: 89784827--89784899 Score: 83
Period size: 16 Copynumber: 4.6 Consensus size: 16
89784817 ACGTTTAGTT
89784827 GGCTGTAATGGAATAG
1 GGCTGTAATGGAATAG
* **
89784843 GGTTGTAATTAAATAG
1 GGCTGTAATGGAATAG
* *
89784859 TGTTGTAATGGAATAG
1 GGCTGTAATGGAATAG
*
89784875 GGCTATAATGGAATAG
1 GGCTGTAATGGAATAG
*
89784891 AGCTGTAAT
1 GGCTGTAAT
89784900 AAGTAATTCA
Statistics
Matches: 46, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.34, C:0.04, G:0.30, T:0.32
Consensus pattern (16 bp):
GGCTGTAATGGAATAG
Found at i:89784943 original size:46 final size:44
Alignment explanation
Indices: 89784881--89784974 Score: 125
Period size: 44 Copynumber: 2.1 Consensus size: 44
89784871 ATAGGGCTAT
*
89784881 AATGGAATAGAGCTGTAATAAGTAATTCAACTATTTGGTTGAATGG
1 AATGGAATAGAACTGTAAT-AGT-ATTCAACTATTTGGTTGAATGG
*** *
89784927 AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTATTCAACTATTTGGTTGAATGG
89784971 AATG
1 AATG
89784975 ATGTTGTAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
44 22 0.51
45 3 0.07
46 18 0.42
ACGTcount: A:0.34, C:0.05, G:0.26, T:0.35
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCAACTATTTGGTTGAATGG
Found at i:89785159 original size:53 final size:55
Alignment explanation
Indices: 89785069--89785200 Score: 142
Period size: 53 Copynumber: 2.4 Consensus size: 55
89785059 TTGTTATTAA
* * * ** * *
89785069 ATTTTAATAAAATTATTGTTAAATATATTTTGTTAAAA-AA-ATAATTTAACCAT
1 ATTTTAATATAATTATTATTAAATATAATTTAATAAAATAATATAATTTAACAAC
* *
89785122 ATTTTAACATAATTATTATTAAATATAATTTAATAAAATAATGTATAATTTAATAAC
1 ATTTTAATATAATTATTATTAAATATAATTTAATAAAATAA--TATAATTTAACAAC
89785179 ATTCTTAATATAATTATTATTA
1 ATT-TTAATATAATTATTATTA
89785201 TATGAATTAA
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
53 32 0.50
54 2 0.03
57 13 0.20
58 17 0.27
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (55 bp):
ATTTTAATATAATTATTATTAAATATAATTTAATAAAATAATATAATTTAACAAC
Found at i:89788484 original size:62 final size:62
Alignment explanation
Indices: 89788387--89788509 Score: 246
Period size: 62 Copynumber: 2.0 Consensus size: 62
89788377 TCTTCAATTT
89788387 TATTCAGCGATGGTCAGAATAGCCATTCCAAGCTTTCAGCACTGAATCCCTATTACGCGTTC
1 TATTCAGCGATGGTCAGAATAGCCATTCCAAGCTTTCAGCACTGAATCCCTATTACGCGTTC
89788449 TATTCAGCGATGGTCAGAATAGCCATTCCAAGCTTTCAGCACTGAATCCCTATTACGCGTT
1 TATTCAGCGATGGTCAGAATAGCCATTCCAAGCTTTCAGCACTGAATCCCTATTACGCGTT
89788510 TGTGGGAATA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (62 bp):
TATTCAGCGATGGTCAGAATAGCCATTCCAAGCTTTCAGCACTGAATCCCTATTACGCGTTC
Done.