Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 262 of 295
Found at i:90166684 original size:33 final size:33
Alignment explanation
Indices: 90166647--90166715 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 33
90166637 GTGTTTTCAT
*
90166647 TTGTTTTACGATCTAAGCATAATCCTATTCAGG
1 TTGTTTTACGATCTAAGCATAATCCTATTCAAG
*
90166680 TTGTTTTACGATCTAAGCATAATCCTGTTCAAG
1 TTGTTTTACGATCTAAGCATAATCCTATTCAAG
90166713 TTG
1 TTG
90166716 AGAGTGATAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.26, C:0.17, G:0.16, T:0.41
Consensus pattern (33 bp):
TTGTTTTACGATCTAAGCATAATCCTATTCAAG
Found at i:90170209 original size:3 final size:3
Alignment explanation
Indices: 90170201--90170226 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
90170191 CCAATAACGT
90170201 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
90170227 TAAAATGGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:90171349 original size:22 final size:22
Alignment explanation
Indices: 90171332--90171376 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
90171322 AAGAGGGGGG
90171332 ATCGATGGTATTTTGAGGAAGA
1 ATCGATGGTATTTTGAGGAAGA
*
90171354 ATCGATTGTATTTTG-GGAGAGA
1 ATCGATGGTATTTTGAGGA-AGA
90171376 A
1 A
90171377 GAGATTGTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 3 0.14
22 18 0.86
ACGTcount: A:0.31, C:0.04, G:0.31, T:0.33
Consensus pattern (22 bp):
ATCGATGGTATTTTGAGGAAGA
Found at i:90171382 original size:22 final size:22
Alignment explanation
Indices: 90171339--90171387 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
90171329 GGGATCGATG
**
90171339 GTATTTTGAGGAAGAATCGATT
1 GTATTTTGAGGAAGAAGAGATT
90171361 GTATTTTG-GGAGAGAAGAGATT
1 GTATTTTGAGGA-AGAAGAGATT
90171383 GTATT
1 GTATT
90171388 AGAGGGGGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 3 0.12
22 21 0.88
ACGTcount: A:0.31, C:0.02, G:0.31, T:0.37
Consensus pattern (22 bp):
GTATTTTGAGGAAGAAGAGATT
Found at i:90172014 original size:43 final size:40
Alignment explanation
Indices: 90171962--90172068 Score: 155
Period size: 38 Copynumber: 2.6 Consensus size: 40
90171952 AAAATAAAGT
90171962 ATGGTTTTAATTAATAATAAAAACAAAATAATAGTATGGGGGA
1 ATGGTTTTAATTAATAAT-AAAACAAAA-AATAGTAT-GGGGA
90172005 ATGGTTTTAATTAATAATAAAAC--AAAATAGTATGGGGA
1 ATGGTTTTAATTAATAATAAAACAAAAAATAGTATGGGGA
* *
90172043 GTAGTTTTAATTAATAATAAAACAAA
1 ATGGTTTTAATTAATAATAAAACAAA
90172069 GTAGCATGGG
Statistics
Matches: 60, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
38 26 0.43
39 8 0.13
40 3 0.05
42 5 0.08
43 18 0.30
ACGTcount: A:0.50, C:0.03, G:0.16, T:0.32
Consensus pattern (40 bp):
ATGGTTTTAATTAATAATAAAACAAAAAATAGTATGGGGA
Found at i:90174008 original size:41 final size:42
Alignment explanation
Indices: 90173963--90174042 Score: 117
Period size: 41 Copynumber: 1.9 Consensus size: 42
90173953 AAATACAAAC
* * *
90173963 ATTAAAACATATATTAAAATAACAAATAAATT-AAAAATTAT
1 ATTAAAACAAATATTAAAACAACAAACAAATTGAAAAATTAT
*
90174004 ATTAAAATAAATATTAAAACAACAAACAAATTGAAAAAT
1 ATTAAAACAAATATTAAAACAACAAACAAATTGAAAAAT
90174043 AACTATATGT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
41 28 0.82
42 6 0.18
ACGTcount: A:0.65, C:0.06, G:0.01, T:0.28
Consensus pattern (42 bp):
ATTAAAACAAATATTAAAACAACAAACAAATTGAAAAATTAT
Found at i:90175541 original size:188 final size:188
Alignment explanation
Indices: 90175224--90175604 Score: 726
Period size: 188 Copynumber: 2.0 Consensus size: 188
90175214 AAATAAAGAT
*
90175224 AATAATGGTATCATCCACTTAACCTATTGAGCATCATATAAATGTTGATGGAAAATTTTGAAGTT
1 AATAATGGTATCATCCACTCAACCTATTGAGCATCATATAAATGTTGATGGAAAATTTTGAAGTT
* *
90175289 TTCTAATATTGAAATTTCGAAGTTTATAGAAGTATTATTTAAGTCATTGATTGAATTAGTGTCAC
66 GTCTAATATTGAAATTTCGAAGTTTATAAAAGTATTATTTAAGTCATTGATTGAATTAGTGTCAC
90175354 AAGTCAACCATGTACCAACTCAGTTAAGAAAATTACAAAAATATTCTTTCGTATTTAA
131 AAGTCAACCATGTACCAACTCAGTTAAGAAAATTACAAAAATATTCTTTCGTATTTAA
*
90175412 AATAATGGTGTCATCCACTCAACCTATTGAGCATCATATAAATGTTGATGGAAAATTTTGAAGTT
1 AATAATGGTATCATCCACTCAACCTATTGAGCATCATATAAATGTTGATGGAAAATTTTGAAGTT
90175477 GTCTAATATTGAAATTTCGAAGTTTATAAAAGTATTATTTAAGTCATTGATTGAATTAGTGTCAC
66 GTCTAATATTGAAATTTCGAAGTTTATAAAAGTATTATTTAAGTCATTGATTGAATTAGTGTCAC
90175542 AAGTCAACCATGTACCAACTCAGTTAAGAAAATTACAAAAATATTCTTTCGTATTTAA
131 AAGTCAACCATGTACCAACTCAGTTAAGAAAATTACAAAAATATTCTTTCGTATTTAA
90175600 AATAA
1 AATAA
90175605 GTTATATTAT
Statistics
Matches: 189, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
188 189 1.00
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.36
Consensus pattern (188 bp):
AATAATGGTATCATCCACTCAACCTATTGAGCATCATATAAATGTTGATGGAAAATTTTGAAGTT
GTCTAATATTGAAATTTCGAAGTTTATAAAAGTATTATTTAAGTCATTGATTGAATTAGTGTCAC
AAGTCAACCATGTACCAACTCAGTTAAGAAAATTACAAAAATATTCTTTCGTATTTAA
Found at i:90177097 original size:32 final size:31
Alignment explanation
Indices: 90177042--90177102 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 31
90177032 TAGATAAAAA
90177042 AATAAAAAATAAAAAAATAATTTAAATTATG
1 AATAAAAAATAAAAAAATAATTTAAATTATG
*
90177073 AATAAAAAATTTAAATAAAT-ATTTAAATTA
1 AATAAAAAA--TAAAAAAATAATTTAAATTA
90177103 AAAGTATTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 9 0.33
32 10 0.37
33 8 0.30
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.33
Consensus pattern (31 bp):
AATAAAAAATAAAAAAATAATTTAAATTATG
Found at i:90182137 original size:46 final size:46
Alignment explanation
Indices: 90182056--90182269 Score: 233
Period size: 46 Copynumber: 4.6 Consensus size: 46
90182046 GTGCCAATGC
90182056 CATGTCCCAGACATGGTCTTACACT-GAC-TATCATCTCGTAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAG-CTTA-CATCTCGTAGCCGATG
** *
90182103 CATGTCCCAGACATACCTTACACTGGCTTACATCTCG-AGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTACATCTCGTA-GCCGATG
* *
90182149 CATGTCCCAGACATGTCTTACACTAGCACT-CGTCTCAGT-GCCGATG
1 CATGTCCCAGACATGTCTTACACTAGC-TTACATCTC-GTAGCCGATG
* * *
90182195 CCATGTCCCAGACATGGTCTTACACTAGCTTCCATAAT-GTGGCCGATG
1 -CATGTCCCAGACAT-GTCTTACACTAGCTTACAT-CTCGTAGCCGATG
90182243 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
90182270 ACACACAAGT
Statistics
Matches: 146, Mismatches: 10, Indels: 23
0.82 0.06 0.13
Matches are distributed among these distances:
45 1 0.01
46 72 0.49
47 50 0.34
48 22 0.15
49 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.26
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTTACATCTCGTAGCCGATG
Found at i:90182255 original size:94 final size:93
Alignment explanation
Indices: 90182056--90182272 Score: 282
Period size: 94 Copynumber: 2.3 Consensus size: 93
90182046 GTGCCAATGC
90182056 CATGTCCCAGACATGGTCTTACACT-G-ACTATCATCTCGTAGCCGATGCATGTCCCAGACATAC
1 CATGTCCCAGACAT-GTCTTACACTAGCAC-ATCATCTCGTAGCCGATGCATGTCCCAGACATAC
* *
90182119 CTTACACTGGCTTACATCTCGAGGCCGATG
64 CTTACACTAGCTTACATATCGAGGCCGATG
* *
90182149 CATGTCCCAGACATGTCTTACACTAGCAC-TCGTCTCAGT-GCCGATGCCATGTCCCAGACATGG
1 CATGTCCCAGACATGTCTTACACTAGCACATCATCTC-GTAGCCGATG-CATGTCCCAGACAT-A
* * *
90182212 TCTTACACTAGCTTCCATAAT-GTGGCCGATG
63 CCTTACACTAGCTTACAT-ATCGAGGCCGATG
90182243 CATGTCCCAGACATGTCTTACACTAGCACA
1 CATGTCCCAGACATGTCTTACACTAGCACA
90182273 CACAAGTGAC
Statistics
Matches: 110, Mismatches: 7, Indels: 12
0.85 0.05 0.09
Matches are distributed among these distances:
92 23 0.21
93 31 0.28
94 55 0.50
95 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (93 bp):
CATGTCCCAGACATGTCTTACACTAGCACATCATCTCGTAGCCGATGCATGTCCCAGACATACCT
TACACTAGCTTACATATCGAGGCCGATG
Found at i:90190537 original size:20 final size:19
Alignment explanation
Indices: 90190479--90190552 Score: 66
Period size: 20 Copynumber: 4.0 Consensus size: 19
90190469 TAGTAGTGAT
*
90190479 AATAACAATAATAGTAA-A-
1 AATAA-AATAATAATAATAG
*
90190497 AATAAAAT-ATTATAATA-
1 AATAAAATAATAATAATAG
90190514 AATAAAATAATAATAATAG
1 AATAAAATAATAATAATAG
* *
90190533 CAATAAAAAAATCATAATAG
1 -AATAAAATAATAATAATAG
90190553 TGATATTAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
16 5 0.11
17 12 0.26
18 13 0.28
20 17 0.36
ACGTcount: A:0.66, C:0.04, G:0.04, T:0.26
Consensus pattern (19 bp):
AATAAAATAATAATAATAG
Found at i:90190543 original size:23 final size:22
Alignment explanation
Indices: 90190494--90190551 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 22
90190484 CAATAATAGT
* *
90190494 AAAAATAA-AATATTATAATAA
1 AAAAATAATAATAATACAATAA
90190515 ATAAAATAATAATAATAGCAATAA
1 A-AAAATAATAATAATA-CAATAA
*
90190539 AAAAATCATAATA
1 AAAAATAATAATA
90190552 GTGATATTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
21 1 0.03
22 7 0.23
23 17 0.55
24 6 0.19
ACGTcount: A:0.69, C:0.03, G:0.02, T:0.26
Consensus pattern (22 bp):
AAAAATAATAATAATACAATAA
Found at i:90199866 original size:30 final size:30
Alignment explanation
Indices: 90199825--90199883 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
90199815 TAACAAGCAA
90199825 ATGCCTCTAAAATAATAAAAAAATAAACAG
1 ATGCCTCTAAAATAATAAAAAAATAAACAG
* * * *
90199855 ATGCCTTTAAAATTATAACAAAATTAACA
1 ATGCCTCTAAAATAATAAAAAAATAAACA
90199884 ATAAAATAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.56, C:0.14, G:0.05, T:0.25
Consensus pattern (30 bp):
ATGCCTCTAAAATAATAAAAAAATAAACAG
Found at i:90201853 original size:2 final size:2
Alignment explanation
Indices: 90201842--90201883 Score: 77
Period size: 2 Copynumber: 21.5 Consensus size: 2
90201832 ATAAAGACAT
90201842 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
90201883 T
1 T
90201884 CTTTCATGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 38 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:90203671 original size:28 final size:29
Alignment explanation
Indices: 90203631--90203685 Score: 67
Period size: 28 Copynumber: 1.9 Consensus size: 29
90203621 TTTATGGGTT
* *
90203631 AAAATTAAGTTTTAT-ACTTTTATAATAA
1 AAAATAAAATTTTATGACTTTTATAATAA
* *
90203659 AAAATAAAATTTTGTGATTTTTATAAT
1 AAAATAAAATTTTATGACTTTTATAAT
90203686 TTTTAAAGAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
28 12 0.55
29 10 0.45
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.47
Consensus pattern (29 bp):
AAAATAAAATTTTATGACTTTTATAATAA
Found at i:90207890 original size:17 final size:19
Alignment explanation
Indices: 90207849--90207890 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
90207839 CTAGTAATGT
90207849 TAAA-ATATATATAATATA
1 TAAATATATATATAATATA
*
90207867 TACATATATATATAA-A-A
1 TAAATATATATATAATATA
90207884 TAAATAT
1 TAAATAT
90207891 TGAAAAATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 7 0.33
18 4 0.19
19 10 0.48
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (19 bp):
TAAATATATATATAATATA
Found at i:90208233 original size:9 final size:9
Alignment explanation
Indices: 90208204--90208243 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
90208194 AAATATAATA
*
90208204 AATAATAAT
1 AATAACAAT
*
90208213 AATAATAAT
1 AATAACAAT
90208222 AATAACAAT
1 AATAACAAT
*
90208231 AATAGCAAT
1 AATAACAAT
90208240 AATA
1 AATA
90208244 GTTAAAATAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.65, C:0.05, G:0.03, T:0.28
Consensus pattern (9 bp):
AATAACAAT
Found at i:90208243 original size:3 final size:3
Alignment explanation
Indices: 90208180--90208234 Score: 58
Period size: 3 Copynumber: 17.7 Consensus size: 3
90208170 AAGTACCTAT
*
90208180 TAA TAA TAT TATA TAA -ATA TAA TAAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TA-A TAA TA-A TAA T-AA TAA TAA TAA TAA TAA TAA TAA
*
90208227 CAA TAA TA
1 TAA TAA TA
90208235 GCAATAATAG
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
2 1 0.02
3 37 0.84
4 6 0.14
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:90208428 original size:3 final size:3
Alignment explanation
Indices: 90208422--90208651 Score: 115
Period size: 3 Copynumber: 75.7 Consensus size: 3
90208412 ATAGTAAATG
* *
90208422 TAA TAA TAA TAA TAA TAA TAT TAA GTAA CAA TAA TAA TAA TAA T-A
1 TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA
* *
90208467 TAGA -AA TTCAA -AA -AA GTAA -ACA TAA T-A TAA TGA TAT TAA -AA
1 TA-A TAA -T-AA TAA TAA -TAA TA-A TAA TAA TAA TAA TAA TAA TAA
* * * *
90208508 TAA -AA T-A TACA CTAA TAT TTA TAAA TAA TAA TAG TAA -ATA TAA TAG
1 TAA TAA TAA TA-A -TAA TAA TAA T-AA TAA TAA TAA TAA TA-A TAA TAA
* * *
90208554 TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAT TAA GT-A TAG T-A
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA TAA
* * *
90208598 TAAA TAA TATG TACA TAA TAG TAA TAA TAA GTAA CAA TAA TAA TAA TAA
1 T-AA TAA TA-A TA-A TAA TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA
90208647 TAA TA
1 TAA TA
90208652 TAGAAATTCA
Statistics
Matches: 173, Mismatches: 29, Indels: 50
0.69 0.12 0.20
Matches are distributed among these distances:
2 19 0.11
3 128 0.74
4 22 0.13
5 4 0.02
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:90210639 original size:18 final size:18
Alignment explanation
Indices: 90210616--90210650 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
90210606 GAAAAGATGT
90210616 TGAA-TTTATGGAAAATTC
1 TGAATTTTAT-GAAAATTC
90210634 TGAATTTTATGAAAATT
1 TGAATTTTATGAAAATT
90210651 TTATAGGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.40, C:0.03, G:0.14, T:0.43
Consensus pattern (18 bp):
TGAATTTTATGAAAATTC
Found at i:90211441 original size:24 final size:24
Alignment explanation
Indices: 90211301--90211441 Score: 67
Period size: 24 Copynumber: 5.6 Consensus size: 24
90211291 ACACACCATA
**
90211301 GCTCTTATGAGCGACTCGATATATG
1 GCTCTTATGAGCTTCTCGAT-TATG
*
90211326 ACTCTTCA-GAGCTTC-CTGATTAATG
1 GCTCTT-ATGAGCTTCTC-GATT-ATG
* * * *
90211351 GCTCTTTCATGAGATTCCCCAATAATTG
1 GCTC-TT-ATGAGCTT-CTCGATTA-TG
90211379 GCTCTCTA-GAGCTTCTCGA-TATTG
1 GCTCT-TATGAGCTTCTCGATTA-TG
* *
90211403 GCTCGTT-TTAACTTCTCGATTATG
1 GCTC-TTATGAGCTTCTCGATTATG
90211427 GCTCTTATGAGCTTC
1 GCTCTTATGAGCTTC
90211442 CTGTTATACA
Statistics
Matches: 88, Mismatches: 15, Indels: 27
0.68 0.12 0.21
Matches are distributed among these distances:
23 2 0.02
24 32 0.36
25 25 0.28
26 10 0.11
27 8 0.09
28 10 0.11
29 1 0.01
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.38
Consensus pattern (24 bp):
GCTCTTATGAGCTTCTCGATTATG
Found at i:90218729 original size:27 final size:27
Alignment explanation
Indices: 90218691--90218744 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
90218681 AAAATCTGAT
90218691 TTGTCATACAATCCTTTCTCATGTGCC
1 TTGTCATACAATCCTTTCTCATGTGCC
90218718 TTGTCATACAATCCTTTCTCATGTGCC
1 TTGTCATACAATCCTTTCTCATGTGCC
90218745 AACATGTTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.19, C:0.30, G:0.11, T:0.41
Consensus pattern (27 bp):
TTGTCATACAATCCTTTCTCATGTGCC
Found at i:90220312 original size:42 final size:42
Alignment explanation
Indices: 90220258--90220347 Score: 103
Period size: 42 Copynumber: 2.1 Consensus size: 42
90220248 AGCTCTCACA
* *
90220258 AGCTTCTATTTAACTCATATCAG-TTTCCGTTCAGCTC-TATTG
1 AGCTTCTATTTAACCCATAT-AGTTTTCCATTCAGCTCTTA-TG
* * *
90220300 AGCTTCTGTTTAACCCTTATGGTTTTCCATTCAGCTCTTATG
1 AGCTTCTATTTAACCCATATAGTTTTCCATTCAGCTCTTATG
90220342 AGCTTC
1 AGCTTC
90220348 AGTTCAACCC
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
41 1 0.02
42 38 0.93
43 2 0.05
ACGTcount: A:0.19, C:0.24, G:0.13, T:0.43
Consensus pattern (42 bp):
AGCTTCTATTTAACCCATATAGTTTTCCATTCAGCTCTTATG
Found at i:90220353 original size:21 final size:21
Alignment explanation
Indices: 90220329--90220385 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
90220319 TGGTTTTCCA
90220329 TTCAGCTCTTATGAGCTTCAG
1 TTCAGCTCTTATGAGCTTCAG
* * * * *
90220350 TTCAACCCTTATGGGTTTCTG
1 TTCAGCTCTTATGAGCTTCAG
*
90220371 TTTAGCTCTTATGAG
1 TTCAGCTCTTATGAG
90220386 ATTTTGTTTA
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.18, C:0.21, G:0.19, T:0.42
Consensus pattern (21 bp):
TTCAGCTCTTATGAGCTTCAG
Found at i:90220357 original size:42 final size:42
Alignment explanation
Indices: 90220280--90220385 Score: 142
Period size: 42 Copynumber: 2.5 Consensus size: 42
90220270 ACTCATATCA
* *
90220280 GTTTCCGTTCAGCTC-TATTGAGCTTCTGTTTAACCCTTATGG
1 GTTTCCGTTCAGCTCTTA-TGAGCTTCAGTTCAACCCTTATGG
* *
90220322 TTTTCCATTCAGCTCTTATGAGCTTCAGTTCAACCCTTATGG
1 GTTTCCGTTCAGCTCTTATGAGCTTCAGTTCAACCCTTATGG
* *
90220364 GTTTCTGTTTAGCTCTTATGAG
1 GTTTCCGTTCAGCTCTTATGAG
90220386 ATTTTGTTTA
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
42 53 0.96
43 2 0.04
ACGTcount: A:0.16, C:0.23, G:0.18, T:0.43
Consensus pattern (42 bp):
GTTTCCGTTCAGCTCTTATGAGCTTCAGTTCAACCCTTATGG
Found at i:90232643 original size:18 final size:18
Alignment explanation
Indices: 90232620--90232661 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
90232610 GGCAAGTGCA
90232620 TATCCTAACCCTTATATG
1 TATCCTAACCCTTATATG
*
90232638 TATCCTAACCTTTATATG
1 TATCCTAACCCTTATATG
*
90232656 TTTCCT
1 TATCCT
90232662 TTTCCTAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.05, T:0.45
Consensus pattern (18 bp):
TATCCTAACCCTTATATG
Found at i:90233139 original size:33 final size:33
Alignment explanation
Indices: 90233064--90233142 Score: 97
Period size: 33 Copynumber: 2.4 Consensus size: 33
90233054 TTTCATTTAA
* * * *
90233064 TAAAACCTAATTTATTTATTTATTTAAAACCTT
1 TAAAACCTAATTTAATTATTTATTGAAAAACTC
90233097 TAAAACCTAATTTAATTATTT-TTAGAAAAACTC
1 TAAAACCTAATTTAATTATTTATT-GAAAAACTC
*
90233130 TAAACCCTAATTT
1 TAAAACCTAATTT
90233143 TTTTTTAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
32 2 0.05
33 38 0.95
ACGTcount: A:0.42, C:0.14, G:0.01, T:0.43
Consensus pattern (33 bp):
TAAAACCTAATTTAATTATTTATTGAAAAACTC
Found at i:90238252 original size:84 final size:84
Alignment explanation
Indices: 90238133--90238293 Score: 227
Period size: 84 Copynumber: 1.9 Consensus size: 84
90238123 CGAAAAATGC
* * *
90238133 TTAATTGCTTTTTAAAAAATTTTGAGAGTCTTTTTTTATGCATTTTGAAAGTTCAAGTACCCAAT
1 TTAATTGCTTTTTAAAAAAATTTGAGAGGCTTTTTTTATGCATTTTGAAAGTTAAAGTACCCAAT
*
90238198 TAAGTGAAAAAAGTAGGGT
66 TAAGTAAAAAAAGTAGGGT
* **
90238217 TTAATTGCTTTTTTTAAAAAAATTTGAG-GGC-TTTTTTATGTATTTTGAAAGTTAAAGTACTGA
1 TTAATTGC--TTTTTAAAAAAATTTGAGAGGCTTTTTTTATGCATTTTGAAAGTTAAAGTACCCA
90238280 ATTAAGTAAAAAAA
64 ATTAAGTAAAAAAA
90238294 AAAAGAGGGA
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
84 49 0.72
85 2 0.03
86 17 0.25
ACGTcount: A:0.37, C:0.06, G:0.16, T:0.42
Consensus pattern (84 bp):
TTAATTGCTTTTTAAAAAAATTTGAGAGGCTTTTTTTATGCATTTTGAAAGTTAAAGTACCCAAT
TAAGTAAAAAAAGTAGGGT
Found at i:90238754 original size:21 final size:21
Alignment explanation
Indices: 90238730--90238773 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
90238720 TTATGATAAT
90238730 ATAAATAT-ATATTAATTAAAA
1 ATAAATATAAT-TTAATTAAAA
* *
90238751 ATAATTATAATTTAATTTAAA
1 ATAAATATAATTTAATTAAAA
90238772 AT
1 AT
90238774 TATTAATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (21 bp):
ATAAATATAATTTAATTAAAA
Found at i:90259632 original size:96 final size:96
Alignment explanation
Indices: 90259461--90259746 Score: 464
Period size: 96 Copynumber: 3.0 Consensus size: 96
90259451 GTGTCTGAGG
* * * * *
90259461 AAGTCTGTTATCGATGGGAATGATCGAGCAGACACGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
* *
90259526 AAAAGTCGAAGCCAAGAGGGCAAAGAGGAGC
66 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
*
90259557 AAGTCTGTCATTGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
90259622 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
66 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
* * *
90259653 AAGTCTGTCATCGCAGGGAACGATGGAGCAGACAATGAGCCCAAGAAGCTTGGTTCGAGCAAGGA
1 AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
*
90259718 TAAAGCCGAAGCCAAGAGGGCTAAGAGGA
66 TAAAGCCGAAGCCAAGAGGGCAAAGAGGA
90259747 ACAAAAAGAA
Statistics
Matches: 177, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
96 177 1.00
ACGTcount: A:0.35, C:0.18, G:0.34, T:0.13
Consensus pattern (96 bp):
AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
Found at i:90262592 original size:96 final size:96
Alignment explanation
Indices: 90262426--90262711 Score: 491
Period size: 96 Copynumber: 3.0 Consensus size: 96
90262416 GTGTCCGAAG
* * * * *
90262426 AAGTCTGTTATCGATGGGAATGATCGAGCAGACACGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
*
90262491 AAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
66 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
*
90262522 AAGTCTGTCATTGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
90262587 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
66 TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
*
90262618 AAGTCTGTCATCGCAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
1 AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
*
90262683 TAAAGCCGAAGCCAAGAGGGCTAAGAGGA
66 TAAAGCCGAAGCCAAGAGGGCAAAGAGGA
90262712 ACAAAAAGAA
Statistics
Matches: 180, Mismatches: 10, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 180 1.00
ACGTcount: A:0.35, C:0.19, G:0.35, T:0.12
Consensus pattern (96 bp):
AAGTCTGTCATCGAAGGGAACGATGGAGCAGACAAGGAGCCCAAGAAGCTTGGTTCGAGCAAGGG
TAAAGCCGAAGCCAAGAGGGCAAAGAGGAGC
Found at i:90264930 original size:16 final size:15
Alignment explanation
Indices: 90264911--90264962 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 15
90264901 GTCTTTTAAA
90264911 ATTTATATAATTTTAT
1 ATTTA-ATAATTTTAT
90264927 ATTTAGATAATTTTTCAT
1 ATTTA-ATAA-TTTT-AT
90264945 ATATTAATAA-TTTAT
1 AT-TTAATAATTTTAT
90264960 ATT
1 ATT
90264963 ATCAAGATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
14 1 0.03
15 4 0.12
16 12 0.38
17 4 0.12
18 8 0.25
19 3 0.09
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (15 bp):
ATTTAATAATTTTAT
Found at i:90264954 original size:18 final size:17
Alignment explanation
Indices: 90264911--90264957 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
90264901 GTCTTTTAAA
*
90264911 ATTTATATAA-TTTTAT
1 ATTTAGATAATTTTTAT
90264927 ATTTAGATAATTTTTCAT
1 ATTTAGATAATTTTT-AT
90264945 ATATTA-ATAATTT
1 AT-TTAGATAATTT
90264958 ATATTATCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
16 9 0.33
17 4 0.15
18 11 0.41
19 3 0.11
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (17 bp):
ATTTAGATAATTTTTAT
Found at i:90276829 original size:3 final size:3
Alignment explanation
Indices: 90276821--90276849 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
90276811 TAACTTTCAT
90276821 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
90276850 TAAATACCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:90278463 original size:21 final size:20
Alignment explanation
Indices: 90278439--90278488 Score: 64
Period size: 22 Copynumber: 2.4 Consensus size: 20
90278429 ATTTATAACA
* *
90278439 TATTCAATTCTCATCTCTTGC
1 TATTCAAATCTCAT-ACTTGC
90278460 TATTTCAAATCTCATACTTGC
1 TA-TTCAAATCTCATACTTGC
90278481 TATTCAAA
1 TATTCAAA
90278489 GAGCTTTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 6 0.23
21 9 0.35
22 11 0.42
ACGTcount: A:0.28, C:0.24, G:0.04, T:0.44
Consensus pattern (20 bp):
TATTCAAATCTCATACTTGC
Found at i:90278663 original size:40 final size:37
Alignment explanation
Indices: 90278618--90278701 Score: 96
Period size: 37 Copynumber: 2.2 Consensus size: 37
90278608 GTACTCAGTA
*
90278618 CCTCATCGGATAATTCAAAGTAATAATTTGACACCTAGTG
1 CCTCATCGGATAAATCAAAGT-A-AA-TTGACACCTAGTG
* * * *
90278658 TCTCATCGGCTAAATCGAAGTAAATTGGCACCTAGTG
1 CCTCATCGGATAAATCAAAGTAAATTGACACCTAGTG
90278695 CCTCATC
1 CCTCATC
90278702 AAATTAATCT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
37 18 0.47
38 2 0.05
39 1 0.03
40 17 0.45
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.29
Consensus pattern (37 bp):
CCTCATCGGATAAATCAAAGTAAATTGACACCTAGTG
Found at i:90280074 original size:10 final size:10
Alignment explanation
Indices: 90280059--90280095 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
90280049 ATAAAATCAA
90280059 AAATAAAAAT
1 AAATAAAAAT
90280069 AAATAAAAAT
1 AAATAAAAAT
*
90280079 AAATAAATA-
1 AAATAAAAAT
90280088 AAATAAAA
1 AAATAAAA
90280096 TAAGAATTTC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 7 0.28
10 18 0.72
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (10 bp):
AAATAAAAAT
Found at i:90280084 original size:14 final size:13
Alignment explanation
Indices: 90280065--90280094 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
90280055 TCAAAAATAA
90280065 AAATAAATAAAAAT
1 AAATAAAT-AAAAT
90280079 AAATAAATAAAAT
1 AAATAAATAAAAT
90280092 AAA
1 AAA
90280095 ATAAGAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
AAATAAATAAAAT
Found at i:90280090 original size:23 final size:23
Alignment explanation
Indices: 90280051--90280094 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
90280041 AATTTAACAT
*
90280051 AAAATCAAAAATAAAAATAAATA
1 AAAATAAAAAATAAAAATAAATA
90280074 AAAATAAATAAAT-AAAATAAA
1 AAAATAAA-AAATAAAAATAAA
90280095 ATAAGAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.80, C:0.02, G:0.00, T:0.18
Consensus pattern (23 bp):
AAAATAAAAAATAAAAATAAATA
Found at i:90280096 original size:14 final size:14
Alignment explanation
Indices: 90280058--90280098 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
90280048 CATAAAATCA
90280058 AAAATAAAAATAAAT
1 AAAAT-AAAATAAAT
90280073 AAAA-ATAAATAAAT
1 AAAATA-AAATAAAT
90280087 AAAATAAAATAA
1 AAAATAAAATAA
90280099 GAATTTCCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 1 0.04
14 18 0.75
15 5 0.21
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (14 bp):
AAAATAAAATAAAT
Found at i:90280953 original size:9 final size:9
Alignment explanation
Indices: 90280939--90280971 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
90280929 CCCTAATTTC
90280939 TTCTTTCTT
1 TTCTTTCTT
90280948 TTCTTTCTT
1 TTCTTTCTT
*
90280957 CTCTTTCTT
1 TTCTTTCTT
90280966 TTCTTT
1 TTCTTT
90280972 ATTTATTTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (9 bp):
TTCTTTCTT
Found at i:90281007 original size:14 final size:14
Alignment explanation
Indices: 90280969--90281016 Score: 55
Period size: 13 Copynumber: 3.6 Consensus size: 14
90280959 CTTTCTTTTC
*
90280969 TTTATT-TATTTCA
1 TTTATTATATTTAA
* *
90280982 TTTACT-TATTTAT
1 TTTATTATATTTAA
90280995 TTTATTATATTTAA
1 TTTATTATATTTAA
90281009 TTTATTAT
1 TTTATTAT
90281017 TATTATATTA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
13 15 0.52
14 14 0.48
ACGTcount: A:0.27, C:0.04, G:0.00, T:0.69
Consensus pattern (14 bp):
TTTATTATATTTAA
Found at i:90281021 original size:20 final size:19
Alignment explanation
Indices: 90280972--90281025 Score: 67
Period size: 17 Copynumber: 2.9 Consensus size: 19
90280962 TCTTTTCTTT
* *
90280972 ATTTATTTCATT-TACTT-
1 ATTTATTTTATTATATTTA
90280989 ATTTATTTTATTATATTTA
1 ATTTATTTTATTATATTTA
90281008 ATTTATTATTATTATATT
1 ATTTATT-TTATTATATT
90281026 ATAAATATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
17 11 0.34
18 4 0.12
19 7 0.22
20 10 0.31
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.67
Consensus pattern (19 bp):
ATTTATTTTATTATATTTA
Found at i:90281034 original size:20 final size:19
Alignment explanation
Indices: 90280992--90281035 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
90280982 TTTACTTATT
*
90280992 TATTTTATTATATTTAATT
1 TATTTTATTATATTTAATA
90281011 TATTATTATTATATTATAA-A
1 TATT-TTATTATATT-TAATA
90281031 TATTT
1 TATTT
90281036 ACTTAAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 5 0.23
20 14 0.64
21 3 0.14
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
TATTTTATTATATTTAATA
Found at i:90282750 original size:157 final size:156
Alignment explanation
Indices: 90282360--90283687 Score: 1434
Period size: 157 Copynumber: 8.7 Consensus size: 156
90282350 AAATATTAAA
* * * *
90282360 ATATTGTATCAACGGATACATATCGATACATA-CATATATAAATTGATATTGATAAAAACATATC
1 ATATTGTATCAACGGATACAGATTGATACATACCA-ATATAAATCGATATTGATCAAAACATATC
* * * *
90282424 AATAAATACATATCTCGAGATACGAGAATGATTTTTGTTCCCCGCATTTTCTCACCATTTTTTAT
65 AATAAATACATATCTCGAGATACGAGAATAATTTTTGTTCCCTGCATTTTCTCA-TA-TATTT-T
* *
90282489 TTTATTTTGAAAGATGTTTTGCATCATTTT
127 TTTATTTTGAAAGATGTTTCGCATGATTTT
*
90282519 ATATTGTATCAATGGATACAGATTGATACATA-C---------CGATATTGATCAAAACATATCA
1 ATATTGTATCAACGGATACAGATTGATACATACCAATATAAATCGATATTGATCAAAACATATCA
*
90282574 ATAAATACATATCTCGAGATACGAGAATAATTTTTGTTCCCTGCATTTTCTCATAAAATTTTTTT
66 ATAAATACATATCTCGAGATACGAGAATAATTTTTGTTCCCTGCATTTTCTCAT-ATATTTTTTT
* *
90282639 ATTTTGTAAGATGTTTCGCATCATTTT
130 ATTTTGAAAGATGTTTCGCATGATTTT
* * * * *
90282666 ATATTGTATTAACAGATATAGATTGATACATACCGATATAAATCGATATTGATCAAAACATATAA
1 ATATTGTATCAACGGATACAGATTGATACATACCAATATAAATCGATATTGATCAAAACATATCA
* * *
90282731 ATAAATACATATCTCGAGATACGAAAATAATTTTTGTTCCCTGCATTTTTTCATCAATTTTTTTT
66 ATAAATACATATCTCGAGATACGAGAATAATTTTTGTTCCCTGCATTTTCTCAT--ATATTTTTT
90282796 TATTTT-AAACGATGTTTCGCATGATTTT
129 TATTTTGAAA-GATGTTTCGCATGATTTT
* *
90282824 ATATTGTATCAATGGATACAGATTGGTACATACCAATATAAATCGATATTG--------------
1 ATATTGTATCAACGGATACAGATTGATACATACCAATATAAATCGATATTGATCAAAACATATCA
* *
90282875 ATAAATACATATCTCGAGATACGAGAATGATTTTTGTTCCCTGCATTTTCTCATATTTTTTTTTT
66 ATAAATACATATCTCGAGATACGAGAATAATTTTTGTTCCCTGCATTTTCTCATA-TATTTTTTT
90282940 ATTTTGAAAGATGTTTCGCATGATTTT
130 ATTTTGAAAGATGTTTCGCATGATTTT
** *
90282967 ATATTGTATCAACGGATACAGATTGATACATATAAATATAAATCGATATTGATCAAAACATATTA
1 ATATTGTATCAACGGATACAGATTGATACATACCAATATAAATCGATATTGATCAAAACATATCA
* * * *
90283032 AAAAATACATATCTTGAGATACGAGAATAATTTTTGTTCTCTGCATTTTCTCAT-CA--TTTTT-
66 ATAAATACATATCTCGAGATACGAGAATAATTTTTGTTCCCTGCATTTTCTCATATATTTTTTTA
* *
90283093 TTTTGAAAGATGTTTTGCATCA-TTT
131 TTTTGAAAGATGTTTCGCATGATTTT
* ** **
90283118 ATATTGTATCAACGGATATAGATCAATACATACTGATATAAATCGATATTGAT-AAACACATATC
1 ATATTGTATCAACGGATACAGATTGATACATACCAATATAAATCGATATTGATCAAA-ACATATC
* * * * *
90283182 AATAAATATATATCTTGATATGCGAGAATAATTTTTGTTCTCTGCATTTTCTCATCAT-TTTTTT
65 AATAAATACATATCTCGAGATACGAGAATAATTTTTGTTCCCTGCATTTTCTCAT-ATATTTTTT
* * *
90283246 AAAAAATTTTGAAAGATGTTTCACTTGATTTT
129 ----TATTTTGAAAGATGTTTCGCATGATTTT
* * * * * *
90283278 ATATTGTATCAACGGATACATATTGACAGATTCCGATATAAATCGATATTGATCAAAACATATTA
1 ATATTGTATCAACGGATACAGATTGATACATACCAATATAAATCGATATTGATCAAAACATATCA
* * *
90283343 ATAAATACATATCTTGAGATACGTGAATAATTTTTGTT--CT-CA-----TCAT-T-TTATTTTA
66 ATAAATACATATCTCGAGATACGAGAATAATTTTTGTTCCCTGCATTTTCTCATATATTTTTTTA
*
90283398 TTTTGAAAGATGTTTCGCATGATTTC
131 TTTTGAAAGATGTTTCGCATGATTTT
* * * * *
90283424 ATATTGTATCAACGGATACAGATCGATCCATACCTATATAAATCAATATTGATCAAAACATATTA
1 ATATTGTATCAACGGATACAGATTGATACATACCAATATAAATCGATATTGATCAAAACATATCA
*
90283489 ATAAATATCTATAT-T-GAGATACGAGAATAATTTTTGTTCCCTGCATTTTTCTCATAATTTTTT
66 ATAAATA-C-ATATCTCGAGATACGAGAATAATTTTTGTTCCCTGCA-TTTTCTCAT-A--TATT
* *
90283552 TTATTTATTTTGAAAGATGTTTTGCATCATTTT
125 TT-TTTATTTTGAAAGATGTTTCGCATGATTTT
* ** * * * * *
90283585 ATATTATATCAATAGATACAGATCGATGCATACTAATATAAAAT-TATATTGATAAAAACATATC
1 ATATTGTATCAACGGATACAGATTGATACATACCAATAT-AAATCGATATTGATCAAAACATATC
* * *
90283649 AATAAATACATATATCGAGATATGAGAATGATTTTTGTT
65 AATAAATACATATCTCGAGATACGAGAATAATTTTTGTT
90283688 TTCCATATTT
Statistics
Matches: 1005, Mismatches: 103, Indels: 120
0.82 0.08 0.10
Matches are distributed among these distances:
142 1 0.00
143 79 0.08
144 54 0.05
146 110 0.11
147 59 0.06
148 10 0.01
149 74 0.07
150 9 0.01
151 107 0.11
152 24 0.02
153 5 0.00
154 4 0.00
155 4 0.00
157 127 0.13
158 78 0.08
159 53 0.05
160 94 0.09
161 109 0.11
162 4 0.00
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.41
Consensus pattern (156 bp):
ATATTGTATCAACGGATACAGATTGATACATACCAATATAAATCGATATTGATCAAAACATATCA
ATAAATACATATCTCGAGATACGAGAATAATTTTTGTTCCCTGCATTTTCTCATATATTTTTTTA
TTTTGAAAGATGTTTCGCATGATTTT
Found at i:90282968 original size:301 final size:303
Alignment explanation
Indices: 90282360--90283709 Score: 1381
Period size: 301 Copynumber: 4.4 Consensus size: 303
90282350 AAATATTAAA
* * * * * *
90282360 ATATTGTATCAACGGATACATATCGATACATACATATATAAATTGATATTGATAAAAACATATCA
1 ATATTGTATCAACGGATACAGATTGATACATACAAATATAAATCGATATTGATCAAAACATATAA
* * *
90282425 ATAAATACATATCTCGAGATACGAGAATGATTTTTGTTCCCCGCATTTTCTCACCATTTTTTATT
66 ATAAATACATATCTCGAGATACGAGAATAATTTTTGTTCCCTGCATTTTCTCATCA-TTTTT-TT
* * *
90282490 TTATTTTGAAAGATGTTTTGCATCATTTTATATTGTATCAATGGATACAGATTGATACATACCGA
129 TTATTTTGAAAGATGTTTCGCATCATTTTATATTGTATCAACGGATACAGATCGATACATACC-A
* **
90282555 TATTGATCAAAAC-ATATCAATA-AATACATATCTCGAGATACGAGAATAATTTTTGTTCCCTGC
193 -A-T-AT-AAATCGATATTGATATAATACATATCTCGAGATACGAGAATAATTTTTGTTCCCTGC
** *
90282618 ATTTTCTCATAA-AATTTT-TTTATTTTGTAAGATGTTTCGCATCATTTT
254 ATTTTCTCATAATTTTTTTATTTATTTTGAAAGATGTTTCGCATCATTTT
* * * **
90282666 ATATTGTATTAACAGATATAGATTGATACATACCGATATAAATCGATATTGATCAAAACATATAA
1 ATATTGTATCAACGGATACAGATTGATACATACAAATATAAATCGATATTGATCAAAACATATAA
* *
90282731 ATAAATACATATCTCGAGATACGAAAATAATTTTTGTTCCCTGCATTTTTTCATCAATTTTTTTT
66 ATAAATACATATCTCGAGATACGAGAATAATTTTTGTTCCCTGCATTTTCTCATC-ATTTTTTTT
* * * *
90282796 TATTTT-AAACGATGTTTCGCATGATTTTATATTGTATCAATGGATACAGATTGGTACATACCAA
130 TATTTTGAAA-GATGTTTCGCATCATTTTATATTGTATCAACGGATACAGATCGATACATACCAA
*
90282860 TATAAATCGATATTGATA-AATACATATCTCGAGATACGAGAATGATTTTTGTTCCCTGCATTTT
194 TATAAATCGATATTGATATAATACATATCTCGAGATACGAGAATAATTTTTGTTCCCTGCATTTT
*
90282924 CTCAT-ATTTTTTT-TTTATTTTGAAAGATGTTTCGCATGATTTT
259 CTCATAATTTTTTTATTTATTTTGAAAGATGTTTCGCATCATTTT
*
90282967 ATATTGTATCAACGGATACAGATTGATACATATAAATATAAATCGATATTGATCAAAACATATTA
1 ATATTGTATCAACGGATACAGATTGATACATACAAATATAAATCGATATTGATCAAAACATA-TA
* *
90283032 AA-AAATACATATCTTGAGATACGAGAATAATTTTTGTTCTCTGCATTTTCTCATCA----TTTT
65 AATAAATACATATCTCGAGATACGAGAATAATTTTTGTTCCCTGCATTTTCTCATCATTTTTTTT
* * * **
90283092 T-TTTTGAAAGATGTTTTGCATCA-TTTATATTGTATCAACGGATATAGATCAATACATACTGAT
130 TATTTTGAAAGATGTTTCGCATCATTTTATATTGTATCAACGGATACAGATCGATACATACCAAT
* * * *
90283155 ATAAATCGATATTGATAAACACATATCAATAAATATATATCTTGATATGCGAGAATAATTTTTGT
195 ATAAATCGATATTG----------AT--AT-AATACATATCTCGAGATACGAGAATAATTTTTGT
* * *** * * *
90283220 TCTCTGCATTTTCTCATCATTTTTTTAAAAAATTTTGAAAGATGTTTCACTTGATTTT
247 TCCCTGCATTTTCTCATAATTTTTTT-ATTTATTTTGAAAGATGTTTCGCATCATTTT
* * * * ** *
90283278 ATATTGTATCAACGGATACATATTGACAGATTCCGATATAAATCGATATTGATCAAAACATATTA
1 ATATTGTATCAACGGATACAGATTGATACATACAAATATAAATCGATATTGATCAAAACATATAA
* * *
90283343 ATAAATACATATCTTGAGATACGTGAATAA---TT-TT---TG----TTCTCATCATTTTATTTT
66 ATAAATACATATCTCGAGATACGAGAATAATTTTTGTTCCCTGCATTTTCTCATCATTTTTTTTT
* * * *
90283397 ATTTTGAAAGATGTTTCGCATGATTTCATATTGTATCAACGGATACAGATCGATCCATACCTATA
131 ATTTTGAAAGATGTTTCGCATCATTTTATATTGTATCAACGGATACAGATCGATACATACCAATA
* * *
90283462 TAAATCAATATTGATCAAAACATATTAATAAATATCTATATTGAGATACGAGAATAATTTTTGTT
196 TAAATCGATATTG--------ATA-TAATACATATC----TCGAGATACGAGAATAATTTTTGTT
*
90283527 CCCTGCATTTTTCTCATAATTTTTTTTATTTATTTTGAAAGATGTTTTGCATCATTTT
248 CCCTGCA-TTTTCTCATAA-TTTTTTTATTTATTTTGAAAGATGTTTCGCATCATTTT
* ** * * * * * *
90283585 ATATTATATCAATAGATACAGATCGATGCATACTAATATAAAAT-TATATTGATAAAAACATATC
1 ATATTGTATCAACGGATACAGATTGATACATACAAATAT-AAATCGATATTGATCAAAACATATA
* * * *
90283649 AATAAATACATATATCGAGATATGAGAATGATTTTTGTTTTCCAT--ATTTTCTCATCATTTT
65 AATAAATACATATCTCGAGATACGAGAATAATTTTTG--TTCCCTGCATTTTCTCATCATTTT
90283710 ATATTATTGA
Statistics
Matches: 883, Mismatches: 111, Indels: 88
0.82 0.10 0.08
Matches are distributed among these distances:
294 47 0.05
295 16 0.02
296 8 0.01
300 15 0.02
301 196 0.22
302 15 0.02
303 2 0.00
304 17 0.02
305 78 0.09
306 187 0.21
307 108 0.12
308 58 0.07
309 8 0.01
310 5 0.01
311 107 0.12
313 2 0.00
316 1 0.00
318 13 0.01
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.41
Consensus pattern (303 bp):
ATATTGTATCAACGGATACAGATTGATACATACAAATATAAATCGATATTGATCAAAACATATAA
ATAAATACATATCTCGAGATACGAGAATAATTTTTGTTCCCTGCATTTTCTCATCATTTTTTTTT
ATTTTGAAAGATGTTTCGCATCATTTTATATTGTATCAACGGATACAGATCGATACATACCAATA
TAAATCGATATTGATATAATACATATCTCGAGATACGAGAATAATTTTTGTTCCCTGCATTTTCT
CATAATTTTTTTATTTATTTTGAAAGATGTTTCGCATCATTTT
Found at i:90283403 original size:146 final size:146
Alignment explanation
Indices: 90282922--90283687 Score: 589
Period size: 146 Copynumber: 5.0 Consensus size: 146
90282912 TCCCTGCATT
* * *
90282922 TTCTCAT-ATTTTTTTTTTATTTTGAAAGATGTTTCGCATGATTTTATATTGTATCAACGGATAC
1 TTCTCATCA-TTTTATTTTATTTTGAAAGATGTTTCACATGATTTCATATTGTATCAACGGATAC
* * *** * * *
90282986 AGATTGATACATATAAATATAAATCGATATTGATCAAAACATATTAAAAAATA-CATATCTTGAG
65 AGATCGATCCATACCGATATAAATCAATATTGATCAAAACATATTAATAAATATC-TATATTGAG
90283050 ATACGAGAATAATTTTTG
129 ATACGAGAATAATTTTTG
* ** *
90283068 TTCTC-TGCATTTTCTCATCATTTTTTTTTGAAAGATGTTTTGCATCATTT-ATATTGTATCAAC
1 TTCTCAT-CA--TT-T--T-ATTTTATTTTGAAAGATGTTTCACATGATTTCATATTGTATCAAC
* * * * * * *
90283131 GGATATAGATCAATACATACTGATATAAATCGATATTGAT-AAACACATATCAATAAATATATAT
59 GGATACAGATCGATCCATACCGATATAAATCAATATTGATCAAA-ACATATTAATAAATATCTAT
* * *
90283195 CTTGATATGCGAGAATAATTTTTG
123 ATTGAGATACGAGAATAATTTTTG
* *
90283219 TTCTC-TGCATTTTCTCATCATTTTTTTAAAAAATTTTGAAAGATGTTTCACTTGATTTTATATT
1 TTCTCAT-CA--TT-T--T-A---TTTT-----ATTTTGAAAGATGTTTCACATGATTTCATATT
* * * * *
90283283 GTATCAACGGATACATATTGA-CAGATTCCGATATAAATCGATATTGATCAAAACATATTAATAA
51 GTATCAACGGATACAGATCGATC-CATACCGATATAAATCAATATTGATCAAAACATATTAATAA
* *
90283347 ATA-CATATCTTGAGATACGTGAATAATTTTTG
115 ATATC-TATATTGAGATACGAGAATAATTTTTG
*
90283379 TTCTCATCATTTTATTTTATTTTGAAAGATGTTTCGCATGATTTCATATTGTATCAACGGATACA
1 TTCTCATCATTTTATTTTATTTTGAAAGATGTTTCACATGATTTCATATTGTATCAACGGATACA
*
90283444 GATCGATCCATACCTATATAAATCAATATTGATCAAAACATATTAATAAATATCTATATTGAGAT
66 GATCGATCCATACCGATATAAATCAATATTGATCAAAACATATTAATAAATATCTATATTGAGAT
90283509 ACGAGAATAATTTTTG
131 ACGAGAATAATTTTTG
* ** * *
90283525 TTCCCTGCATTTTTCTCATAATTTTTTTTATTTATTTTGAAAGATGTTTTGCATCATTTTATATT
1 TT--CT-CA------TC---A--TTTTAT-TTTATTTTGAAAGATGTTTCACATGATTTCATATT
* ** * ** * * *
90283590 ATATCAATAGATACAGATCGATGCATACTAATATAAAAT-TATATTGATAAAAACATATCAATAA
51 GTATCAACGGATACAGATCGATCCATACCGATAT-AAATCAATATTGATCAAAACATATTAATAA
* * *
90283654 ATA-CATATATCGAGATATGAGAATGATTTTTG
115 ATATC-TATATTGAGATACGAGAATAATTTTTG
90283686 TT
1 TT
90283688 TTCCATATTT
Statistics
Matches: 519, Mismatches: 60, Indels: 67
0.80 0.09 0.10
Matches are distributed among these distances:
145 1 0.00
146 120 0.23
147 3 0.01
148 5 0.01
149 3 0.01
150 3 0.01
151 110 0.21
152 27 0.05
154 5 0.01
155 3 0.01
157 1 0.00
158 3 0.01
159 21 0.04
160 95 0.18
161 115 0.22
162 4 0.01
ACGTcount: A:0.36, C:0.12, G:0.11, T:0.42
Consensus pattern (146 bp):
TTCTCATCATTTTATTTTATTTTGAAAGATGTTTCACATGATTTCATATTGTATCAACGGATACA
GATCGATCCATACCGATATAAATCAATATTGATCAAAACATATTAATAAATATCTATATTGAGAT
ACGAGAATAATTTTTG
Found at i:90283685 original size:161 final size:162
Alignment explanation
Indices: 90283388--90283687 Score: 428
Period size: 161 Copynumber: 1.9 Consensus size: 162
90283378 GTTCTCATCA
* * *
90283388 TTTTATTTTATTTTGAAAGATGTTTCGCATGATTTCATATTGTATCAACGGATACAGATCGATCC
1 TTTTATTTTATTTTGAAAGATGTTTCGCATCATTTCATATTATATCAACAGATACAGATCGATCC
* * *
90283453 ATACCTATATAAATCAATATTGATCAAAACATATTAATAAATATCTATATTGAGATACGAGAATA
66 ATACCTATATAAATCAATATTGATAAAAACATATCAATAAATATCTATATCGAGATACGAGAATA
90283518 ATTTTTGTTCCCTGCATTTTTCTCATAATTTT
131 ATTTTTGTTCCCTGCATTTTTCTCATAATTTT
* * * *
90283550 TTTTA-TTTATTTTGAAAGATGTTTTGCATCATTTTATATTATATCAATAGATACAGATCGATGC
1 TTTTATTTTATTTTGAAAGATGTTTCGCATCATTTCATATTATATCAACAGATACAGATCGATCC
* *
90283614 ATA-CTAATATAAAAT-TATATTGATAAAAACATATCAATAAATA-CATATATCGAGATATGAGA
66 ATACCT-ATAT-AAATCAATATTGATAAAAACATATCAATAAATATC-TATATCGAGATACGAGA
*
90283676 ATGATTTTTGTT
128 ATAATTTTTGTT
90283688 TTCCATATTT
Statistics
Matches: 122, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
160 3 0.02
161 110 0.90
162 9 0.07
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.42
Consensus pattern (162 bp):
TTTTATTTTATTTTGAAAGATGTTTCGCATCATTTCATATTATATCAACAGATACAGATCGATCC
ATACCTATATAAATCAATATTGATAAAAACATATCAATAAATATCTATATCGAGATACGAGAATA
ATTTTTGTTCCCTGCATTTTTCTCATAATTTT
Found at i:90296115 original size:48 final size:48
Alignment explanation
Indices: 90296044--90296417 Score: 264
Period size: 48 Copynumber: 7.9 Consensus size: 48
90296034 TACTAGGGTT
*
90296044 ATATGTGAGCTACTGTAAGACCATGTCTGGGACATGGCATCGGCCTCG
1 ATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCG
* * * * * *
90296092 ATATGTGAGCCAGTGGAAGACCATGTTTGGAACATGGCATCGGCAT-T
1 ATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCG
* * * * *
90296139 ATTATGAGAGCTAGTGTAAGACCATGTCTGAGACATGGCATTGACCTTG
1 A-TATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCG
* * * * * ** *
90296188 ATATGTGAGCCAGTTTAAGACCATGTTTGGAACATGGCCTCGGTATTG
1 ATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCG
* * * * *
90296236 TTATGAGAGCTAGTGTAAGAACATATCTGGGACATGACATCGGCCTC-
1 ATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCG
* * * * ** *
90296283 -------AGCTAGTCTAAGACCATGTTTGGAACATGGCGTCGGTATTG
1 ATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCG
* * * * * *
90296324 TTGTATGAGCCAGTATAAGACCATGTCTGGGACATGGCATTGGCAC-CG
1 ATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCG
* * * *
90296372 ATATATGAGAGCCAGTGTAAGACCATGTCTAGAACATGGCATCGGC
1 --ATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
90296418 ATCTTACCCT
Statistics
Matches: 245, Mismatches: 68, Indels: 24
0.73 0.20 0.07
Matches are distributed among these distances:
40 30 0.12
47 1 0.00
48 177 0.72
49 1 0.00
50 36 0.15
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (48 bp):
ATATGTGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCG
Found at i:90296214 original size:96 final size:95
Alignment explanation
Indices: 90296045--90296419 Score: 388
Period size: 96 Copynumber: 4.0 Consensus size: 95
90296035 ACTAGGGTTA
* * * * *
90296045 TATGTGAGCTACTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTGGAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCT-TATATGTGAGCCAGTGTAA
*
90296110 GACCATGTTTGGAACATGGCATCGGCATTAT
65 GACCATGTTTGGAACATGGCATCGGCATTGT
* * *
90296141 TATGAGAGCTAGTGTAAGACCATGTCTGAGACATGGCATTGACCTTGATATGTGAGCCAGTTTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTT-ATATGTGAGCCAGTGTAA
* *
90296206 GACCATGTTTGGAACATGGCCTCGGTATTGT
65 GACCATGTTTGGAACATGGCATCGGCATTGT
* * * * * * *
90296237 TATGAGAGCTAGTGTAAGAACATATCTGGGACATGACATCGGCC-------TCAGCTAGTCTAAG
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTTATATGTGAGCCAGTGTAAG
* *
90296295 ACCATGTTTGGAACATGGCGTCGGTATTGT
66 ACCATGTTTGGAACATGGCATCGGCATTGT
* * * * * *
90296325 TGT-ATGAGCCAGTATAAGACCATGTCTGGGACATGGCATTGGCACCGATATATGAGAGCCAGTG
1 TATGA-GAGCTAGTGTAAGACCATGTCTGGGACATGGCA-TCG-ACC-TTATATGTGAGCCAGTG
* *
90296389 TAAGACCATGTCTAGAACATGGCATCGGCAT
62 TAAGACCATGTTTGGAACATGGCATCGGCAT
90296420 CTTACCCTTT
Statistics
Matches: 230, Mismatches: 37, Indels: 22
0.80 0.13 0.08
Matches are distributed among these distances:
87 1 0.00
88 70 0.30
89 2 0.01
90 2 0.01
96 122 0.53
98 33 0.14
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.27
Consensus pattern (95 bp):
TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTTATATGTGAGCCAGTGTAAG
ACCATGTTTGGAACATGGCATCGGCATTGT
Found at i:90302244 original size:19 final size:20
Alignment explanation
Indices: 90302222--90302263 Score: 68
Period size: 19 Copynumber: 2.1 Consensus size: 20
90302212 AAGTAGTCTT
*
90302222 AAAATAAAATAA-AAGTAAA
1 AAAATAAAATAATAAATAAA
90302241 AAAATAAAATAATAAATAAA
1 AAAATAAAATAATAAATAAA
90302261 AAA
1 AAA
90302264 TTTTAAACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (20 bp):
AAAATAAAATAATAAATAAA
Found at i:90322019 original size:96 final size:94
Alignment explanation
Indices: 90321849--90322177 Score: 433
Period size: 96 Copynumber: 3.4 Consensus size: 94
90321839 ACTAGGGTTA
* * *
90321849 TATGTGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCCAGCATAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTATAA
* * *
90321914 GACAATGTTTGGGACATGGTCTCGGCATTGT
66 GAC-CTGTTTGGAACATGG-CTCGACATTGT
* *
90321945 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATTGGCCTTGATATGTGAGCCAGTATAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTATAA
* *
90322010 GTCTCTGTTTGGAACATGGCCTCGATATTGT
66 GAC-CTGTTTGGAACATGG-CTCGACATTGT
* * * *
90322041 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTATAA
*
90322106 GACCATGCTTGGAACATGGCATCGACATTGT
66 GACC-TGTTTGGAACATGGC-TCGACATTGT
* * * *
90322137 TGTATGAGCCAGTATAAGCCCATGTTTGGGACATGGCATCG
1 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCG
90322178 ACACCGATAT
Statistics
Matches: 204, Mismatches: 27, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
95 2 0.01
96 202 0.99
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (94 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCCAGTATAA
GACCTGTTTGGAACATGGCTCGACATTGT
Found at i:90322180 original size:48 final size:48
Alignment explanation
Indices: 90321848--90322177 Score: 358
Period size: 48 Copynumber: 6.9 Consensus size: 48
90321838 TACTAGGGTT
* * * *
90321848 ATATGTGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCG
1 ATATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTG
** *
90321896 ATATGTGAGCCAGCATAAGACAATGTTTGGGACATGGTC-TCGGCATTG
1 ATATGTGAGCCAGTGTAAGACCATGTTTGGGACATGG-CATCGGCATTG
* * *
90321944 TTATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATTGGCCTTG
1 ATATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTG
* * * * **
90321992 ATATGTGAGCCAGTATAAGTCTC-TGTTTGGAACATGGCCTCGATATTG
1 ATATGTGAGCCAGTGTAAGAC-CATGTTTGGGACATGGCATCGGCATTG
* * * * *
90322040 TTATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCG
1 ATATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTG
* * * *
90322088 ATATGTGAGCTAGTGTAAGACCATGCTTGGAACATGGCATCGACATTG
1 ATATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTG
* * * * *
90322136 TTGTATGAGCCAGTATAAGCCCATGTTTGGGACATGGCATCG
1 ATATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCG
90322178 ACACCGATAT
Statistics
Matches: 230, Mismatches: 48, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
47 2 0.01
48 226 0.98
49 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (48 bp):
ATATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTG
Found at i:90322223 original size:98 final size:96
Alignment explanation
Indices: 90321849--90322232 Score: 303
Period size: 96 Copynumber: 4.0 Consensus size: 96
90321839 ACTAGGGTTA
* * * * * * * **
90321849 TATGTGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTGAGCCAGCATAA
1 TATGAGAGCCAGTATAAGACCATGTTTGGGACATGGCATCGACCTCGATATGAGAGCTAGTGTAA
* *** *
90321914 GA-CAATGTTTGGGACATGGTC-TCGGCATTGT
66 GACCAA-GCTTAAAACATGG-CATCGACATTGT
* * * * * * * *
90321945 TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATTGGCCTTGATATGTGAGCCAGTATAA
1 TATGAGAGCCAGTATAAGACCATGTTTGGGACATGGCATCGACCTCGATATGAGAGCTAGTGTAA
* * * ** * *
90322010 GTCTC-TGTTTGGAACATGGCCTCGATATTGT
66 GAC-CAAGCTTAAAACATGGCATCGACATTGT
* * * *
90322041 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCTCGATATGTGAGCTAGTGTAA
1 TATGAGAGCCAGTATAAGACCATGTTTGGGACATGGCATCGACCTCGATATGAGAGCTAGTGTAA
* **
90322106 GACCATGCTTGGAACATGGCATCGACATTGT
66 GACCAAGCTTAAAACATGGCATCGACATTGT
* *
90322137 TGT-ATGAGCCAGTATAAGCCCATGTTTGGGACATGGCATCGACAC-CGATATATGAGAGCTAGT
1 TATGA-GAGCCAGTATAAGACCATGTTTGGGACATGGCATCGAC-CTCG--ATATGAGAGCTAGT
*
90322200 GTAAGACTAAG-TCTAAAACATGGCATCGACATT
62 GTAAGACCAAGCT-TAAAACATGGCATCGACATT
90322233 TTACCCTTTT
Statistics
Matches: 249, Mismatches: 30, Indels: 16
0.84 0.10 0.05
Matches are distributed among these distances:
95 3 0.01
96 203 0.82
97 2 0.01
98 41 0.16
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (96 bp):
TATGAGAGCCAGTATAAGACCATGTTTGGGACATGGCATCGACCTCGATATGAGAGCTAGTGTAA
GACCAAGCTTAAAACATGGCATCGACATTGT
Found at i:90322438 original size:12 final size:12
Alignment explanation
Indices: 90322421--90322446 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
90322411 TAAGTAAGTT
90322421 ATGTCTATGGTC
1 ATGTCTATGGTC
90322433 ATGTCTATGGTC
1 ATGTCTATGGTC
90322445 AT
1 AT
90322447 TCGAGAATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.19, C:0.15, G:0.23, T:0.42
Consensus pattern (12 bp):
ATGTCTATGGTC
Found at i:90324796 original size:44 final size:44
Alignment explanation
Indices: 90324652--90324810 Score: 164
Period size: 43 Copynumber: 3.7 Consensus size: 44
90324642 AGCTCGTACA
* * * * * *
90324652 ATGCCAACGTCCTAGACATGGCCTTACA-TGCAATCA-AGCATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACAGAAATCACA-AATCG
* * * * *
90324695 ATGCCACTGTCCCAGACAAGGTCTTATAC-GAAATCATATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACAGAAATCACAAATCG
*
90324737 ATGCCAATGTCCCAGACATGGTCTTACACATAAATCACAAATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACAGAAATCACAAATCG
*
90324781 ATGCCAATGTCCCAGACGTGGTCTTACACA
1 ATGCCAATGTCCCAGACATGGTCTTACACA
90324811 ATAACACATA
Statistics
Matches: 97, Mismatches: 15, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
42 28 0.29
43 37 0.38
44 32 0.33
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACATGGTCTTACACAGAAATCACAAATCG
Found at i:90324835 original size:44 final size:44
Alignment explanation
Indices: 90324691--90324810 Score: 163
Period size: 44 Copynumber: 2.8 Consensus size: 44
90324681 GCAATCAAGC
* * * * * *
90324691 ATCGATGCCACTGTCCCAGACAAGGTCTTATAC-GAAATCATAT
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACATAAATCACAA
90324734 A-CGATGCCAATGTCCCAGACATGGTCTTACACATAAATCACAA
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACATAAATCACAA
*
90324777 ATCGATGCCAATGTCCCAGACGTGGTCTTACACA
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACA
90324811 ATAACACATA
Statistics
Matches: 68, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
42 28 0.41
43 9 0.13
44 31 0.46
ACGTcount: A:0.33, C:0.28, G:0.17, T:0.23
Consensus pattern (44 bp):
ATCGATGCCAATGTCCCAGACATGGTCTTACACATAAATCACAA
Found at i:90327457 original size:23 final size:23
Alignment explanation
Indices: 90327430--90327477 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
90327420 CGATTGACAA
*
90327430 TATGAAAACTTGAACAATTGAAC
1 TATGAAAACTTGAACAATCGAAC
90327453 TATGAAAACTTGAACAATCGAAC
1 TATGAAAACTTGAACAATCGAAC
90327476 TA
1 TA
90327478 ACTTTAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.48, C:0.15, G:0.12, T:0.25
Consensus pattern (23 bp):
TATGAAAACTTGAACAATCGAAC
Found at i:90350199 original size:26 final size:29
Alignment explanation
Indices: 90350169--90350228 Score: 90
Period size: 26 Copynumber: 2.2 Consensus size: 29
90350159 TATGTCTTAG
90350169 TAGTCTTCTTACTTTT-TTTTT-A-AATT
1 TAGTCTTCTTACTTTTATTTTTAAGAATT
*
90350195 TAGTCTTTTTACTTTTATTTTTAAGAATT
1 TAGTCTTCTTACTTTTATTTTTAAGAATT
90350224 TAGTC
1 TAGTC
90350229 CCTTTGTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 15 0.50
27 5 0.17
28 1 0.03
29 9 0.30
ACGTcount: A:0.22, C:0.10, G:0.07, T:0.62
Consensus pattern (29 bp):
TAGTCTTCTTACTTTTATTTTTAAGAATT
Found at i:90353489 original size:264 final size:264
Alignment explanation
Indices: 90353019--90353727 Score: 1147
Period size: 264 Copynumber: 2.7 Consensus size: 264
90353009 TTCTGAAGAG
*
90353019 ATATTCGATTATTTTGAACAAACGGGAAATTGCAACCCAGCACGATAGGGTACTATTCCCCGAAT
1 ATATTCGATTGTTTTGAACAAACGGGAAATTGCAACCCAGCACGATAGGGTACTATTCCCCGAAT
90353084 TGCCAAGCATCGAATATTGCCTTCATTTTAAAGGGTTTTTTAGAAAACGTGAGTGAAATTTCGAA
66 TGCCAAGCATCGAATATTGCCTTCATTTTAAAGGGTTTTTTAGAAAACGTGAGTGAAATTTCGAA
90353149 GGAATCTTCGATTGTTTTGAAAAAACAAGAAATCACAACCCAACACGTTAGGGCATGATTCCCGA
131 GGAATCTTCGATTGTTTTGAAAAAACAAGAAATCACAACCCAACACGTTAGGGCATGATTCCCGA
90353214 ATTATCAAACACCGAGTATTGTCTTTGTTTTGGAAGGTTTTTGATAAACACGAGTGAAAACCTAA
196 ATTATCAAACACCGAGTATTGTCTTTGTTTTGGAAGGTTTTTGATAAACACGAGTGAAAACCTAA
90353279 AGGA
261 AGGA
90353283 ATATTCGATTGTTTTGAACAAACGGGAAATTGCAACCCAGCACGATAGGGTACTATTCCCCGAAT
1 ATATTCGATTGTTTTGAACAAACGGGAAATTGCAACCCAGCACGATAGGGTACTATTCCCCGAAT
90353348 TGCCAAGCATCGAATATTGCCTTCATTTTAAAGGGTTTTTTAGAAAACGTGAGTGAAATTTCGAA
66 TGCCAAGCATCGAATATTGCCTTCATTTTAAAGGGTTTTTTAGAAAACGTGAGTGAAATTTCGAA
90353413 GGAATCTTCGATTGTTTTGAAAAAACAAGAAATCACAACCCAACACGTTAGGGCATGATTCCCGA
131 GGAATCTTCGATTGTTTTGAAAAAACAAGAAATCACAACCCAACACGTTAGGGCATGATTCCCGA
90353478 ATTATCAAACACCGAGTATTGTCTTTGTTTTGGAAGGTTTTTGATAAACACGAGTGAAAACCTAA
196 ATTATCAAACACCGAGTATTGTCTTTGTTTTGGAAGGTTTTTGATAAACACGAGTGAAAACCTAA
90353543 AGGA
261 AGGA
* ** * *
90353547 ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCA-TGATT-CTCGAA
1 ATATTCGATTGTTTTGAACAAACGGGAAATTGCAACCCAGCACGATAGGGTACT-ATTCCCCGAA
** * * * * * * * *
90353610 TTATCAAACACCGAGTATTGCCTTCGTTTTAAA-GGATTTTTAGAAGACATGAGTGAAATTTTGA
65 TTGCCAAGCATCGAATATTGCCTTCATTTTAAAGGGTTTTTTAGAAAACGTGAGTGAAATTTCGA
* * * * * ** **
90353674 AGGGATATTTGATTATTTT-AAGCAAACGGGAAATTGCAACCCAACACGTTAGGG
130 AGGAATCTTCGATTGTTTTGAA-AAAACAAGAAATCACAACCCAACACGTTAGGG
90353728 TGCGATTCCG
Statistics
Matches: 418, Mismatches: 25, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
261 2 0.00
262 69 0.17
263 33 0.08
264 314 0.75
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (264 bp):
ATATTCGATTGTTTTGAACAAACGGGAAATTGCAACCCAGCACGATAGGGTACTATTCCCCGAAT
TGCCAAGCATCGAATATTGCCTTCATTTTAAAGGGTTTTTTAGAAAACGTGAGTGAAATTTCGAA
GGAATCTTCGATTGTTTTGAAAAAACAAGAAATCACAACCCAACACGTTAGGGCATGATTCCCGA
ATTATCAAACACCGAGTATTGTCTTTGTTTTGGAAGGTTTTTGATAAACACGAGTGAAAACCTAA
AGGA
Found at i:90353682 original size:131 final size:130
Alignment explanation
Indices: 90353007--90353727 Score: 711
Period size: 131 Copynumber: 5.5 Consensus size: 130
90352997 ATACGTGTGG
* * ** * *
90353007 AATTCTGAA-GAGATATTCGATTATTTTGAACAAACGGGAAATTGCAACCCAGCACGATAGGGTA
1 AATTCTGAAGGA-ATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACGATAGGGCA
** * * * * *
90353071 CT-ATTCCCCGAATTGCCAAGCATCGAATATTGCCTTCATTTTAAAGGGTTTTTTAGAAAACGTG
65 -TGATT-CCCGAATTATCAAACACCGAGTATTGCCTTCGTTTTAAA-GG-TTTTTAGAAAACATG
90353135 AGTGA
126 AGTGA
* * * *
90353140 AATT-TCGAAGGAATCTTCGATTGTTTTGAAAAAACAAGAAATCACAACCCAACACGTTAGGGCA
1 AATTCT-GAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACGATAGGGCA
* * * *
90353204 TGATTCCCGAATTATCAAACACCGAGTATTGTCTTTGTTTTGGAAGGTTTTT-GATAAACACGAG
65 TGATTCCCGAATTATCAAACACCGAGTATTGCCTTCGTTTT-AAAGGTTTTTAGA-AAACATGAG
90353268 TGA
128 TGA
** * * ** * *
90353271 AAACCTAAAGGAATATTCGATTGTTTTGAACAAACGGGAAATTGCAACCCAGCACGATAGGGTAC
1 AATTCTGAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACGATAGGGCA-
** * * * * *
90353336 T-ATTCCCCGAATTGCCAAGCATCGAATATTGCCTTCATTTTAAAGGGTTTTTTAGAAAACGTGA
65 TGATT-CCCGAATTATCAAACACCGAGTATTGCCTTCGTTTTAAA-GG-TTTTTAGAAAACATGA
90353400 GTGA
127 GTGA
* * * *
90353404 AATT-TCGAAGGAATCTTCGATTGTTTTGAAAAAACAAGAAATCACAACCCAACACGTTAGGGCA
1 AATTCT-GAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACGATAGGGCA
* * * *
90353468 TGATTCCCGAATTATCAAACACCGAGTATTGTCTTTGTTTTGGAAGGTTTTT-GATAAACACGAG
65 TGATTCCCGAATTATCAAACACCGAGTATTGCCTTCGTTTT-AAAGGTTTTTAGA-AAACATGAG
90353532 TGA
128 TGA
** * *
90353535 AAACCTAAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAGGGCAT
1 AATTCTGAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACGATAGGGCAT
* *
90353600 GATTCTCGAATTATCAAACACCGAGTATTGCCTTCGTTTTAAAGGATTTTTAGAAGACATGAGTG
66 GATTCCCGAATTATCAAACACCGAGTATTGCCTTCGTTTTAAAGG-TTTTTAGAAAACATGAGTG
90353665 A
130 A
* * * * * ** *
90353666 AATTTTGAAGGGATATTTGATTATTTT-AAGCAAACGGGAAATTGCAACCCAACACGTTAGGG
1 AATTCTGAAGGAATATTCGATTGTTTTGAA-CAAACGAGAAATCACAACCCAACACGATAGGG
90353728 TGCGATTCCG
Statistics
Matches: 476, Mismatches: 93, Indels: 40
0.78 0.15 0.07
Matches are distributed among these distances:
130 10 0.02
131 239 0.50
132 99 0.21
133 124 0.26
134 4 0.01
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.29
Consensus pattern (130 bp):
AATTCTGAAGGAATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACGATAGGGCAT
GATTCCCGAATTATCAAACACCGAGTATTGCCTTCGTTTTAAAGGTTTTTAGAAAACATGAGTGA
Found at i:90355546 original size:5 final size:6
Alignment explanation
Indices: 90355531--90355555 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
90355521 TTTTAAAGAA
90355531 AAAAAT AAAAAT AAAAAT AAAAAT A
1 AAAAAT AAAAAT AAAAAT AAAAAT A
90355556 GATTTGTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:90358267 original size:25 final size:25
Alignment explanation
Indices: 90358238--90358288 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
90358228 CACACAGGAT
90358238 AAACAAACCGTACGCTGAGCAATAA
1 AAACAAACCGTACGCTGAGCAATAA
90358263 AAACAAACCGTACGCTGAGCAATAA
1 AAACAAACCGTACGCTGAGCAATAA
90358288 A
1 A
90358289 GCTCAGTGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.49, C:0.24, G:0.16, T:0.12
Consensus pattern (25 bp):
AAACAAACCGTACGCTGAGCAATAA
Found at i:90359681 original size:17 final size:18
Alignment explanation
Indices: 90359648--90359689 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
90359638 AAATTTAAAG
90359648 AATATATTTTTATATTTTT
1 AATA-ATTTTTATATTTTT
90359667 AATAATTTTTA-ATTTTT
1 AATAATTTTTATATTTTT
90359684 AA-AATT
1 AATAATT
90359690 AGTTTTCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.17
17 8 0.35
18 7 0.30
19 4 0.17
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
AATAATTTTTATATTTTT
Found at i:90360818 original size:7 final size:7
Alignment explanation
Indices: 90360806--90360837 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
90360796 GACGTCATGG
90360806 CATTTGT
1 CATTTGT
90360813 CATTTGT
1 CATTTGT
90360820 CATTTGT
1 CATTTGT
*
90360827 CATTTGC
1 CATTTGT
90360834 CATT
1 CATT
90360838 CGCCATTTGC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.16, C:0.19, G:0.12, T:0.53
Consensus pattern (7 bp):
CATTTGT
Found at i:90360825 original size:14 final size:14
Alignment explanation
Indices: 90360806--90360848 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
90360796 GACGTCATGG
*
90360806 CATTTGTCATTTGT
1 CATTTGTCATTTGC
90360820 CATTTGTCATTTGC
1 CATTTGTCATTTGC
* *
90360834 CATTCGCCATTTGC
1 CATTTGTCATTTGC
90360848 C
1 C
90360849 CCATATGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.14, C:0.26, G:0.14, T:0.47
Consensus pattern (14 bp):
CATTTGTCATTTGC
Found at i:90360831 original size:21 final size:21
Alignment explanation
Indices: 90360806--90360846 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
90360796 GACGTCATGG
* * *
90360806 CATTTGTCATTTGTCATTTGT
1 CATTTGCCATTCGCCATTTGT
90360827 CATTTGCCATTCGCCATTTG
1 CATTTGCCATTCGCCATTTG
90360847 CCCCATATGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.22, G:0.15, T:0.49
Consensus pattern (21 bp):
CATTTGCCATTCGCCATTTGT
Found at i:90364363 original size:21 final size:21
Alignment explanation
Indices: 90364334--90364379 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
90364324 TACTTTACAA
* *
90364334 TGATTTTTATATTTA-AATATG
1 TGATATTTATAATTACAAT-TG
90364355 TGATATTTATAATTACAATTG
1 TGATATTTATAATTACAATTG
90364376 TGAT
1 TGAT
90364380 TATACTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 19 0.86
22 3 0.14
ACGTcount: A:0.35, C:0.02, G:0.11, T:0.52
Consensus pattern (21 bp):
TGATATTTATAATTACAATTG
Found at i:90366615 original size:15 final size:16
Alignment explanation
Indices: 90366595--90366627 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
90366585 ATATATATTT
90366595 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
90366610 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
90366627 T
1 T
90366628 ATAAATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:90366690 original size:73 final size:71
Alignment explanation
Indices: 90366590--90366725 Score: 159
Period size: 72 Copynumber: 1.9 Consensus size: 71
90366580 TATTAATATA
*
90366590 TATTTTTATTTTATTTTTAATTATTTTAAATTTTTAATATAAATATTT-TTTATTATATTGTTAA
1 TATTTTTATTTTATTTTAAATTATTTTAAATTTTTAA-AT--ATATTTATTTATTATATTGTTAA
90366654 TTTGTGTAT
63 TTTGTGTAT
* * ** *
90366663 TATTTTTA-TTTGTTTTAATATTTTTTTATGTTTTTAAATATATTTGATTTATTATATTTTTAA
1 TATTTTTATTTTATTTTAA-ATTATTTTAAATTTTTAAATATATTT-ATTTATTATATTGTTAA
90366726 ATTTTTTTAT
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
70 6 0.11
72 25 0.46
73 23 0.43
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (71 bp):
TATTTTTATTTTATTTTAAATTATTTTAAATTTTTAAATATATTTATTTATTATATTGTTAATTT
GTGTAT
Found at i:90368407 original size:23 final size:23
Alignment explanation
Indices: 90368364--90368414 Score: 86
Period size: 22 Copynumber: 2.2 Consensus size: 23
90368354 ATTTAATTGA
90368364 TTTAGGGTTAGGATTTTTAA-GG
1 TTTAGGGTTAGGATTTTTAAGGG
90368386 TTTAGGGTTAGGATTTTTTAAGGG
1 TTTAGGGTTAGGA-TTTTTAAGGG
90368410 TTTAG
1 TTTAG
90368415 TTTTTTTAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
22 13 0.48
23 7 0.26
24 7 0.26
ACGTcount: A:0.22, C:0.00, G:0.31, T:0.47
Consensus pattern (23 bp):
TTTAGGGTTAGGATTTTTAAGGG
Found at i:90369213 original size:124 final size:126
Alignment explanation
Indices: 90368904--90369283 Score: 554
Period size: 124 Copynumber: 3.0 Consensus size: 126
90368894 TTTCTGCAAG
90368904 AATAATTCT-AAGTAGACGTTTCT-AGACAAATAGTGTCAGAAAACGCTTCAAGCAGGATGCACT
1 AATAATTCTGAA-TAGACGTTTCTGA-ACAAATAGTGTC-GAAAACGCTTCAAGCAGGATGCACT
* * *
90368967 GTCAGTAAAATTTCTAGAAAAAA-CTCCTATGTGGACGCTCTTTTGCTACAGTATTTCGTAGAAA
63 GTCAGCAAAATTTCTA-AAAAAAGCTCCCATGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* * *
90369031 AATAATTCTGAGTAGACGTTTCTGAACAAATAGTGTTGAAAACGCTTCAAGCAGGATGCCCTGTC
1 AATAATTCTGAATAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
* **
90369096 AGCAAAATTTCTAAAAAAAGCTCCCATGTGGACGCTCTTTCGCTACAACAGTTCGTAGAAA
66 AGCAAAATTTCTAAAAAAAGCTCCCATGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
* *
90369157 AATAA-T-TGAATAGACGTTTCTGAACAAATAGTGTCGAAAATGCTTCAAGCAGGATGCATTGTC
1 AATAATTCTGAATAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
** **
90369220 AGCAAAATTTCTGGAAAAAGCTCCCACATGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
66 AGCAAAATTTCTAAAAAAAGCTCCCATGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
90369281 AAT
1 AAT
90369284 GAGGTTATAA
Statistics
Matches: 229, Mismatches: 21, Indels: 9
0.88 0.08 0.03
Matches are distributed among these distances:
124 109 0.48
125 7 0.03
126 80 0.35
127 31 0.14
128 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (126 bp):
AATAATTCTGAATAGACGTTTCTGAACAAATAGTGTCGAAAACGCTTCAAGCAGGATGCACTGTC
AGCAAAATTTCTAAAAAAAGCTCCCATGTGGACGCTCTTTTGCTACAGTAGTTCGTAGAAA
Found at i:90374481 original size:48 final size:45
Alignment explanation
Indices: 90374414--90374547 Score: 144
Period size: 48 Copynumber: 2.8 Consensus size: 45
90374404 TGCAAACATT
* *
90374414 ATAAATGAAAAAAAAATCAAGCAGTATTGAAATTGTAATTATAA-TTGC
1 ATAAATG-AAAAAATATCAA-TAGTATTGAAATT-TAATTA-AATTTGC
90374462 ATAAATGAATAAAATATCAAATAGTATTGCAAATTTAATTAAATTTGC
1 ATAAATGAA-AAAATATC-AATAGTATTG-AAATTTAATTAAATTTGC
*
90374510 ATAAATTAAAATAATATCGAATAGTATTGAAAATTTAA
1 ATAAATGAAAA-AATATC-AATAGTATTG-AAATTTAA
90374548 AATTATAACT
Statistics
Matches: 76, Mismatches: 5, Indels: 10
0.84 0.05 0.11
Matches are distributed among these distances:
47 6 0.08
48 63 0.83
49 7 0.09
ACGTcount: A:0.52, C:0.05, G:0.10, T:0.33
Consensus pattern (45 bp):
ATAAATGAAAAAATATCAATAGTATTGAAATTTAATTAAATTTGC
Found at i:90374719 original size:11 final size:11
Alignment explanation
Indices: 90374680--90374711 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
90374670 TTTTATACAA
90374680 AGAATTTTGAT
1 AGAATTTTGAT
90374691 AGAATTTTGAT
1 AGAATTTTGAT
90374702 AGAATTTTGA
1 AGAATTTTGA
90374712 GAAAATTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.44
Consensus pattern (11 bp):
AGAATTTTGAT
Found at i:90375510 original size:15 final size:16
Alignment explanation
Indices: 90375474--90375524 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 16
90375464 CTACCATTAC
*
90375474 AAACCCAACTAAGCCT
1 AAACCCAAATAAGCCT
*
90375490 -AGCCCAAATAA-CCT
1 AAACCCAAATAAGCCT
* *
90375504 AAACCCAACTAAGCCC
1 AAACCCAAATAAGCCT
90375520 AAACC
1 AAACC
90375525 TAAACCCAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
14 3 0.11
15 18 0.64
16 7 0.25
ACGTcount: A:0.45, C:0.39, G:0.06, T:0.10
Consensus pattern (16 bp):
AAACCCAAATAAGCCT
Found at i:90380293 original size:133 final size:133
Alignment explanation
Indices: 90380125--90380364 Score: 322
Period size: 133 Copynumber: 1.8 Consensus size: 133
90380115 TCATAGCATA
* * *
90380125 CCTTATCTACCTGAAGTTGCAGTAGAGCAGGTTGAAATTACAAGTCTTATCTCCCTGAATTTCCA
1 CCTTATCTACCTGAAGTTACAGTAGAGCAGATTGAAATTACAAGTCTTATCTCCCTGAAGTTCCA
* * *
90380190 GTGGAGCAAACT-AAAGATGGCGAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTACGACCA
66 GTGGAACAAACTGAAA-ATAGCAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTACGACCA
90380254 TTAG
130 TTAG
* * * * *
90380258 CCTTATCT-CTCTGAAGTTACAGTGGAGTAGATTGAAGTTACAAGTCTTATCTCCTTGAAGTTGC
1 CCTTATCTAC-CTGAAGTTACAGTAGAGCAGATTGAAATTACAAGTCTTATCTCCCTGAAGTTCC
* * *
90380322 AGTGGAATAAATTGAAAATAGCAAATCTTATTTCCCTGAAGTT
65 AGTGGAACAAACTGAAAATAGCAAATCTTATCTCCCTGAAGTT
90380365 GAAATGGAAC
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
132 1 0.01
133 87 0.96
134 3 0.03
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (133 bp):
CCTTATCTACCTGAAGTTACAGTAGAGCAGATTGAAATTACAAGTCTTATCTCCCTGAAGTTCCA
GTGGAACAAACTGAAAATAGCAAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTACGACCAT
TAG
Found at i:90380364 original size:45 final size:44
Alignment explanation
Indices: 90379983--90380730 Score: 422
Period size: 45 Copynumber: 16.7 Consensus size: 44
90379973 ATCGATGAAT
* * * * * *
90379983 TACAAGTCTTGTCTCTCTGAAGTTGCAGTGAAGCAGACTGAAGA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAA
* * * *
90380027 TAGCAAATCTTATTTCCTTGAAGTTGCAATGGAACAGATTGAAGCTATAA
1 TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTG-A---A-AA
* * * * **
90380077 GTATATATCTTATCTCTCTGAAGTTGCAGT--AG-AGA-GGATCA
1 -TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAA
* * * * * *
90380118 TAGCATACCTTATCTACCTGAAGTTGCAGTAGAGCAGGTTGAAAT
1 TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAA
* * * * *
90380163 TACAAGTCTTATCTCCCTGAATTTCCAGTGGAGCAAACT-AAAGA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAA-A
* * * **
90380207 TGGCGAATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTACGACCA
1 T-ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT--GAAAA
* ** * * * **
90380254 T--TAGCCTTATCTCTCTGAAGTTACAGTGGAGTAGATTGAAGT
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAA
* * ** *
90380296 TACAAGTCTTATCTCCTTGAAGTTGCAGTGGAATAAATTGAAAA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAA
* * * *
90380340 TAGCAAATCTTATTTCCCTGAAGTTGAAATGGAACAGATTGAAGCTATAAA
1 TA-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G--A-AAA
* *
90380391 TTACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA---AAAA
1 -TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAA
* * * ** * *
90380433 AACAAA-CTTTATCTCCCTGCAGTTACAGTGGAATAGGTTGAAAT
1 TACAAATC-TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAA
* * * *
90380477 TACAAGTCTTATCTCCCTAAAGTTGCAGTGGAACAGACTGAAAA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAA
* *
90380521 CTACAAACCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAAA
1 -TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAA
* * * * * **
90380566 CTACAAACCTTATCTCTCTGAAGTTGCAGTAGAGTAGGTTGAAGC
1 -TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAA
* ** * * *
90380611 CACAAGCCTTATCTCCCTAAAGTTGCAGTGGAGCAAACT-AAAA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAA
* * * * *
90380654 CACAAATCTCATATCCCTGAAGTTGCAGTGGAGCAGACTAAAAA
1 TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAA
* * * *
90380698 CTACAAGTATTATCTCTCTGAAGTTGCGGTGGA
1 -TACAAATCTTATCTCCCTGAAGTTGCAGTGGA
90380731 ATGGATCGAA
Statistics
Matches: 537, Mismatches: 132, Indels: 69
0.73 0.18 0.09
Matches are distributed among these distances:
40 3 0.01
41 51 0.09
42 6 0.01
43 41 0.08
44 167 0.31
45 199 0.37
46 2 0.00
47 5 0.01
48 3 0.01
49 1 0.00
50 23 0.04
51 34 0.06
52 2 0.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.28
Consensus pattern (44 bp):
TACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAA
Found at i:90380482 original size:181 final size:175
Alignment explanation
Indices: 90380260--90380599 Score: 448
Period size: 181 Copynumber: 1.9 Consensus size: 175
90380250 ACCATTAGCC
* * * * *
90380260 TTATCTCTCTGAAGTTACAGTGGAGTAGATTGAAGTTACAAGTCTTATCTCCTTGAAGTTGCAGT
1 TTATCTCCCTGAAGTTACAGTGGAATAGATTGAAATTACAAGTCTTATCTCCCTAAAGTTGCAGT
* * * *
90380325 GGAATAAATTGAAAA-TAGCAAATCTTATTTCCCTGAAGTTGAAATGGAACAGATTGAAGCTATA
66 GGAACAAACTGAAAACTA-CAAACCTTATCTCCCTGAAGTTGAAATGGAACAGATT---G--A-A
* *
90380389 AATTACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGAAAAAAACAAACT
124 AACTACAAACCTTATCTCTCTGAAGTTGCAGTAGAGCAGAAAAAAACAAACT
* *
90380441 TTATCTCCCTGCAGTTACAGTGGAATAGGTTGAAATTACAAGTCTTATCTCCCTAAAGTTGCAGT
1 TTATCTCCCTGAAGTTACAGTGGAATAGATTGAAATTACAAGTCTTATCTCCCTAAAGTTGCAGT
* * * * *
90380506 GGAACAGACTGAAAACTACAAACCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAAACTACA
66 GGAACAAACTGAAAACTACAAACCTTATCTCCCTGAAGTTGAAATGGAACAGATTGAAAACTACA
90380571 AACCTTATCTCTCTGAAGTTGCAGTAGAG
131 AACCTTATCTCTCTGAAGTTGCAGTAGAG
90380600 TAGGTTGAAG
Statistics
Matches: 140, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
175 35 0.25
176 1 0.01
178 1 0.01
181 101 0.72
182 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (175 bp):
TTATCTCCCTGAAGTTACAGTGGAATAGATTGAAATTACAAGTCTTATCTCCCTAAAGTTGCAGT
GGAACAAACTGAAAACTACAAACCTTATCTCCCTGAAGTTGAAATGGAACAGATTGAAAACTACA
AACCTTATCTCTCTGAAGTTGCAGTAGAGCAGAAAAAAACAAACT
Found at i:90380715 original size:132 final size:132
Alignment explanation
Indices: 90380392--90380724 Score: 415
Period size: 134 Copynumber: 2.5 Consensus size: 132
90380382 AGCTATAAAT
* * *
90380392 TACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-AAAAA--ACAAACTTTATCTCCCTGCA
1 TACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATAAAAACTACAAA-TTTATCTCTCTGAA
* * ** * *
90380454 GTTACAGTGGAATAGGTTGAAATTACAAGTCTTATCTCCCTAAAGTTGCAGTGGAACAGACTGAA
65 GTTGCAGTAGAATAGGTTGAAACCACAAGCCTTATCTCCCTAAAGTTGCAGTGGAACAAACTGAA
90380519 AAC
130 AAC
* * *
90380522 TACAAACCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAAACTACAAACCTTATCTCTCTGA
1 TACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGA-TAAAAACTACAAA-TTTATCTCTCTGA
* * *
90380587 AGTTGCAGTAGAGTAGGTTGAAGCCACAAGCCTTATCTCCCTAAAGTTGCAGTGGAGCAAACT-A
64 AGTTGCAGTAGAATAGGTTGAAACCACAAGCCTTATCTCCCTAAAGTTGCAGTGGAACAAACTGA
90380651 AAAC
129 AAAC
* * * *
90380655 -ACAAATCTCATATCCCTGAAGTTGCAGTGGAGCAGACTAAAAACTACAAGTATTATCTCTCTGA
1 TACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGA-TAAAAACTACAAAT-TTATCTCTCTGA
90380719 AGTTGC
64 AGTTGC
90380725 GGTGGAATGG
Statistics
Matches: 175, Mismatches: 23, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
130 35 0.20
132 65 0.37
133 5 0.03
134 70 0.40
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.26
Consensus pattern (132 bp):
TACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATAAAAACTACAAATTTATCTCTCTGAAG
TTGCAGTAGAATAGGTTGAAACCACAAGCCTTATCTCCCTAAAGTTGCAGTGGAACAAACTGAAA
AC
Found at i:90380742 original size:132 final size:132
Alignment explanation
Indices: 90380392--90380748 Score: 420
Period size: 132 Copynumber: 2.7 Consensus size: 132
90380382 AGCTATAAAT
* * *
90380392 TACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-AAAAA--ACAAACTTTATCTCCCTGCA
1 TACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATAAAAACTACAAA-TTTATCTCTCTGAA
* *** * *
90380454 GTTACAGTGGAATAGGTTGAAATTACAAGTCTTATCTCCCTAAAGTTGCAGTGGAACAGACTGAA
65 GTTGCAGTGGAATAGGTTGAAGCAACAAGCCTTATCTCCCTAAAGTTGCAGTGGAACAAACTGAA
90380519 AAC
130 AAC
* * *
90380522 TACAAACCTTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAAAACTACAAACCTTATCTCTCTGA
1 TACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGA-TAAAAACTACAAA-TTTATCTCTCTGA
* * * *
90380587 AGTTGCAGTAGAGTAGGTTGAAGCCACAAGCCTTATCTCCCTAAAGTTGCAGTGGAGCAAACT-A
64 AGTTGCAGTGGAATAGGTTGAAGCAACAAGCCTTATCTCCCTAAAGTTGCAGTGGAACAAACTGA
90380651 AAAC
129 AAAC
* * * *
90380655 -ACAAATCTCATATCCCTGAAGTTGCAGTGGAGCAGACTAAAAACTACAAGTATTATCTCTCTGA
1 TACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGA-TAAAAACTACAAAT-TTATCTCTCTGA
* *
90380719 AGTTGCGGTGGAAT-GGATCGAAGCAACAAG
64 AGTTGCAGTGGAATAGG-TTGAAGCAACAAG
90380749 ATACAGTGGA
Statistics
Matches: 193, Mismatches: 28, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
130 35 0.18
131 2 0.01
132 81 0.42
133 5 0.03
134 70 0.36
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (132 bp):
TACAAATCTTATCTCTCTGAAGTTGCAGTGGAGCAGATAAAAACTACAAATTTATCTCTCTGAAG
TTGCAGTGGAATAGGTTGAAGCAACAAGCCTTATCTCCCTAAAGTTGCAGTGGAACAAACTGAAA
AC
Found at i:90380964 original size:7 final size:7
Alignment explanation
Indices: 90380952--90380994 Score: 56
Period size: 7 Copynumber: 6.6 Consensus size: 7
90380942 CAAATAACCT
90380952 AAACCCA
1 AAACCCA
90380959 AAACCCA
1 AAACCCA
90380966 AAACCC-
1 AAACCCA
90380972 AAA-CCA
1 AAACCCA
*
90380978 AAAACCA
1 AAACCCA
90380985 AAA-CCA
1 AAACCCA
90380991 AAAC
1 AAAC
90380995 ACTAGCCCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
5 2 0.06
6 12 0.36
7 19 0.58
ACGTcount: A:0.63, C:0.37, G:0.00, T:0.00
Consensus pattern (7 bp):
AAACCCA
Found at i:90380975 original size:13 final size:13
Alignment explanation
Indices: 90380952--90381009 Score: 55
Period size: 13 Copynumber: 4.5 Consensus size: 13
90380942 CAAATAACCT
90380952 AAACCCAAAACCCA
1 AAACCC-AAACCCA
90380966 AAACCCAAA-CCA
1 AAACCCAAACCCA
* *
90380978 AAAACCAAAACCA
1 AAACCCAAACCCA
* * *
90380991 AAACACTAGCCCA
1 AAACCCAAACCCA
90381004 AAACCC
1 AAACCC
90381010 CAATAAAAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
12 11 0.31
13 19 0.53
14 6 0.17
ACGTcount: A:0.57, C:0.40, G:0.02, T:0.02
Consensus pattern (13 bp):
AAACCCAAACCCA
Found at i:90380993 original size:6 final size:6
Alignment explanation
Indices: 90380956--90380994 Score: 51
Period size: 6 Copynumber: 6.2 Consensus size: 6
90380946 TAACCTAAAC
*
90380956 CCAAAA CCCAAAA CCCAAA CCAAAAA CCAAAA CCAAAA C
1 CCAAAA -CCAAAA CCAAAA CC-AAAA CCAAAA CCAAAA C
90380995 ACTAGCCCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
6 18 0.62
7 11 0.38
ACGTcount: A:0.62, C:0.38, G:0.00, T:0.00
Consensus pattern (6 bp):
CCAAAA
Found at i:90382012 original size:3 final size:3
Alignment explanation
Indices: 90382006--90382102 Score: 106
Period size: 3 Copynumber: 32.7 Consensus size: 3
90381996 CAATTTAATA
* * * *
90382006 TAT TAT TAC TAT TAT TAT TAT TAT TAT TAC CAT TAT TAT TAC TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
90382054 TAT TTT TAT TAC TAT TAT TAT TAC TAT T-G TAT TAT TAT TGT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
90382101 TA
1 TA
90382103 CATTTTTTGT
Statistics
Matches: 75, Mismatches: 18, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
2 1 0.01
3 74 0.99
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:90382289 original size:3 final size:3
Alignment explanation
Indices: 90382268--90382335 Score: 66
Period size: 3 Copynumber: 22.0 Consensus size: 3
90382258 CAAACTTTAA
* *
90382268 ATT ATTT ATT ATT -TGT ATT ATT TTT GTT ATT ATT ATT ATT ATT ATT
1 ATT A-TT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
* *
90382314 ATC ATT ATT AATT AGT ATT ATT
1 ATT ATT ATT -ATT ATT ATT ATT
90382336 TTTAAAACTA
Statistics
Matches: 54, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
2 1 0.02
3 46 0.85
4 7 0.13
ACGTcount: A:0.29, C:0.01, G:0.04, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:90383545 original size:25 final size:25
Alignment explanation
Indices: 90383499--90383546 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
90383489 AACAACTCCA
* * * *
90383499 TTTTTATTTTGGTCATTTTAATTTT
1 TTTTTAATTTAGTCACTCTAATTTT
90383524 TTTTTAATTTAGTCACTCTAATT
1 TTTTTAATTTAGTCACTCTAATT
90383547 AAAATAATTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.21, C:0.08, G:0.06, T:0.65
Consensus pattern (25 bp):
TTTTTAATTTAGTCACTCTAATTTT
Found at i:90384124 original size:49 final size:49
Alignment explanation
Indices: 90384052--90384151 Score: 155
Period size: 49 Copynumber: 2.0 Consensus size: 49
90384042 CCTAACCCCG
* * **
90384052 ACCTAGACAGGAATGCTTAGTTTAGAATGCCATGTTGTCCTATGAGAAC
1 ACCTAGACAGGAATGATTAGTTTAGAATGCCACGTTGTCCTACCAGAAC
*
90384101 ACCTAGACGGGAATGATTAGTTTAGAATGCCACGTTGTCCTACCAGAAC
1 ACCTAGACAGGAATGATTAGTTTAGAATGCCACGTTGTCCTACCAGAAC
90384150 AC
1 AC
90384152 AGTCATACTT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (49 bp):
ACCTAGACAGGAATGATTAGTTTAGAATGCCACGTTGTCCTACCAGAAC
Found at i:90385746 original size:14 final size:16
Alignment explanation
Indices: 90385727--90385766 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
90385717 ATTATGTTAA
*
90385727 ATTATAA-TA-ATTAT
1 ATTATAATTATATCAT
90385741 ATTATAATTATATCAT
1 ATTATAATTATATCAT
90385757 ATTAT-ATTAT
1 ATTATAATTAT
90385767 GAAATAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 7 0.30
15 7 0.30
16 9 0.39
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (16 bp):
ATTATAATTATATCAT
Found at i:90386050 original size:3 final size:3
Alignment explanation
Indices: 90386042--90386083 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
90386032 AAATAGATAT
* *
90386042 TTA TTA TTA -TA TTA TTA TAA TATA TTA TTA TTA ATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA
90386084 ACTAGTATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
2 2 0.06
3 29 0.88
4 2 0.06
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:90386093 original size:27 final size:24
Alignment explanation
Indices: 90386038--90386083 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
90386028 AAGTAAATAG
90386038 ATAT-TTATTATTATATTATTATA
1 ATATATTATTATTATATTATTATA
90386061 ATATATTATTATTAATATTATTA
1 ATATATTATTATT-ATATTATTA
90386084 ACTAGTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 4 0.19
24 8 0.38
25 9 0.43
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (24 bp):
ATATATTATTATTATATTATTATA
Found at i:90386331 original size:14 final size:14
Alignment explanation
Indices: 90386312--90386339 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
90386302 ATTTTGAAAA
90386312 TTCTTAGATTTTTG
1 TTCTTAGATTTTTG
90386326 TTCTTAGATTTTTG
1 TTCTTAGATTTTTG
90386340 AACATAGATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.14, T:0.64
Consensus pattern (14 bp):
TTCTTAGATTTTTG
Found at i:90386976 original size:70 final size:75
Alignment explanation
Indices: 90386891--90387062 Score: 176
Period size: 70 Copynumber: 2.3 Consensus size: 75
90386881 GAACAAATTA
* * *
90386891 GAAATTAAAAGTGATTTAAATT-AAGT-AATTGAATT-AT-G-AATTATGTGAATATTTGAAA-G
1 GAAACTAAAAGTGATTTGAATTGAA-TAAATTGAATTAATAGAAAATATGTGAATATTTGAAATG
90386950 TATATTGATTG
65 TATATTGATTG
* *
90386961 GAAACTAAGAGTGATTTGAATTGAATCAAATTGAATTGAATGAAGAAAATATGTGAGTATTTGAA
1 GAAACTAAAAGTGATTTGAATTGAAT-AAATTGAATT-AAT--AGAAAATATGTGAATATTTGAA
90387026 ATGTATATTGATTG
62 ATGTATATTGATTG
* * *
90387040 AAAAGTAATTAGTGATTTGAATT
1 GAAACTAA-AAGTGATTTGAATT
90387063 TGATTGGAAA
Statistics
Matches: 83, Mismatches: 8, Indels: 12
0.81 0.08 0.12
Matches are distributed among these distances:
70 20 0.24
71 2 0.02
72 9 0.11
74 2 0.02
77 1 0.01
78 18 0.22
79 18 0.22
80 13 0.16
ACGTcount: A:0.42, C:0.01, G:0.19, T:0.37
Consensus pattern (75 bp):
GAAACTAAAAGTGATTTGAATTGAATAAATTGAATTAATAGAAAATATGTGAATATTTGAAATGT
ATATTGATTG
Found at i:90387865 original size:16 final size:16
Alignment explanation
Indices: 90387846--90387902 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 16
90387836 ATTGAACTAT
90387846 TGAAAGTATGAGAAAG
1 TGAAAGTATGAGAAAG
* *
90387862 TGAAATTAT--G-AAT
1 TGAAAGTATGAGAAAG
90387875 TGAAATGTATGAGAAAG
1 TGAAA-GTATGAGAAAG
*
90387892 TGAAATTATGA
1 TGAAAGTATGA
90387903 ATTGAAATGT
Statistics
Matches: 32, Mismatches: 5, Indels: 8
0.71 0.11 0.18
Matches are distributed among these distances:
13 7 0.22
14 4 0.12
16 14 0.44
17 7 0.22
ACGTcount: A:0.47, C:0.00, G:0.25, T:0.28
Consensus pattern (16 bp):
TGAAAGTATGAGAAAG
Found at i:90387887 original size:30 final size:30
Alignment explanation
Indices: 90387844--90387912 Score: 131
Period size: 30 Copynumber: 2.3 Consensus size: 30
90387834 CGATTGAACT
90387844 ATTGAAA-GTATGAGAAAGTGAAATTATGA
1 ATTGAAATGTATGAGAAAGTGAAATTATGA
90387873 ATTGAAATGTATGAGAAAGTGAAATTATGA
1 ATTGAAATGTATGAGAAAGTGAAATTATGA
90387903 ATTGAAATGT
1 ATTGAAATGT
90387913 GAATTGAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
29 7 0.18
30 32 0.82
ACGTcount: A:0.46, C:0.00, G:0.23, T:0.30
Consensus pattern (30 bp):
ATTGAAATGTATGAGAAAGTGAAATTATGA
Found at i:90389169 original size:26 final size:26
Alignment explanation
Indices: 90389133--90389192 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
90389123 GAAGCTCTGG
90389133 AGAGCCATTAATTAG-GAAGCTCACAA
1 AGAGCCATTAA-TAGAGAAGCTCACAA
* * *
90389159 AGAGCCTTTAATCGAGAAGCTCACGA
1 AGAGCCATTAATAGAGAAGCTCACAA
90389185 AGAGCCAT
1 AGAGCCAT
90389193 ATAACGGGAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 2 0.07
26 27 0.93
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (26 bp):
AGAGCCATTAATAGAGAAGCTCACAA
Found at i:90392075 original size:13 final size:13
Alignment explanation
Indices: 90392057--90392081 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
90392047 TATATTTGGT
90392057 AATAATAATATAA
1 AATAATAATATAA
90392070 AATAATAATATA
1 AATAATAATATA
90392082 TACATAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
AATAATAATATAA
Found at i:90392770 original size:11 final size:11
Alignment explanation
Indices: 90392737--90392777 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
90392727 AAATCATTTT
90392737 GAAGAGAGAAA
1 GAAGAGAGAAA
*
90392748 GAA-A-AAAAA
1 GAAGAGAGAAA
*
90392757 GAAGGGAGAAA
1 GAAGAGAGAAA
90392768 GAAGAGAGAA
1 GAAGAGAGAA
90392778 GGGAGGGGGG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
9 7 0.29
10 1 0.04
11 16 0.67
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (11 bp):
GAAGAGAGAAA
Found at i:90394183 original size:92 final size:89
Alignment explanation
Indices: 90393967--90394478 Score: 387
Period size: 87 Copynumber: 5.7 Consensus size: 89
90393957 TAAAAACAGA
* ** * * *
90393967 AATTGAAAATAGCTCAGCACGTGAGCC-AAGGTTCAACTCACTTCTCGCAATATGAGTTGATTTT
1 AATTGAAAATACCTCAGCGTGTG-GCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
** * *
90394031 T--AAAACAAAATTTGTAAAACAGAT
65 TGCAAAACAAAA-TTAAAAAAAAAAT
* ** * * * *
90394055 TA-TGAAAATACCTC-GATATGTGACCCGAAGCTCAACTCACCTCTCGTAATATGAGTTGATTTT
1 AATTGAAAATACCTCAG-CGTGTGGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*
90394118 TGCAAAGCATAAATTAAAAAAAAACAT
65 TGCAAAACA-AAATTAAAAAAAAA-AT
*
90394145 CAATTGAAAATACCTCGGCGTGTGGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 -AATTGAAAATACCTCAGCGTGTGGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT
*
90394210 TTTG-ACAAACATAAATT-GAAAAAAAA-
63 TTTGCA-AAACA-AAATTAAAAAAAAAAT
*
90394236 AATTGAAAATACCTCAGCGTGT--CCTGAGGCTGAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AATTGAAAATACCTCAGCGTGTGGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TT
* *
90394299 TTTGGAAAAACAAAATTTGAAAAACAAAAT
63 TTT-GCAAAACAAAA-TT-AAAAAAAAAAT
* * *
90394329 --TTGAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCACTCGCAATATGAGCTGATTTT
1 AATTGAAAATACCTCAGCGTGTG-GCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--TT
* * * *
90394391 TTTG-AAACACAAAAATTGAAGAACAGA-
63 TTTGCAAA-AC-AAAATTAAAAAAAAAAT
* * * * *
90394418 AATGGAAAACACCTCAGC--GT--CTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTTT
1 AATTGAAAATACCTCAGCGTGTGGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
90394479 TTGAAAGACA
Statistics
Matches: 354, Mismatches: 43, Indels: 57
0.78 0.09 0.13
Matches are distributed among these distances:
85 5 0.01
86 4 0.01
87 78 0.22
88 36 0.10
89 24 0.07
90 42 0.12
91 41 0.12
92 68 0.19
93 38 0.11
94 18 0.05
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.28
Consensus pattern (89 bp):
AATTGAAAATACCTCAGCGTGTGGCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
GCAAAACAAAATTAAAAAAAAAAT
Found at i:90394335 original size:13 final size:14
Alignment explanation
Indices: 90394303--90394335 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
90394293 ATTTTTTTTG
90394303 GAAAAACAAAATTT
1 GAAAAACAAAATTT
90394317 GAAAAACAAAATTT
1 GAAAAACAAAATTT
90394331 GAAAA
1 GAAAA
90394336 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.67, C:0.06, G:0.09, T:0.18
Consensus pattern (14 bp):
GAAAAACAAAATTT
Found at i:90394535 original size:75 final size:73
Alignment explanation
Indices: 90394413--90394553 Score: 219
Period size: 75 Copynumber: 1.9 Consensus size: 73
90394403 AAATTGAAGA
*
90394413 ACAGAAATGGAAAACACCTCAGCGTCTTGAGGTTCAACTCACCTCTCGCAATATGAGCTGATTTT
1 ACAGAAATGGAAAACACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
90394478 TTTGAAAG
66 TTTGAAAG
* * * *
90394486 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 ACAGAAATGGAAAACACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATT
90394551 TTT
64 TTT
90394554 GAAACTTAAC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
73 18 0.30
74 1 0.02
75 42 0.69
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (73 bp):
ACAGAAATGGAAAACACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
TTTGAAAG
Found at i:90394691 original size:79 final size:75
Alignment explanation
Indices: 90394602--90394795 Score: 237
Period size: 76 Copynumber: 2.5 Consensus size: 75
90394592 ATATGTGACT
* *
90394602 CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAATATAAATTGAAAAAAAATAC
1 CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTG----AAAATAC
* * *
90394667 CTCAGTGTGTGATC
62 CTCAGCGCGTGAGC
* * *
90394681 TGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAAATAGCT
1 -CAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAAAATACCT
90394745 CAGCGCGTGAGC
64 CAGCGCGTGAGC
* *
90394757 CAAGGCTCAACTCACCTCTCGTAATATGAGTCGATTTTT
1 CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
90394796 TTTTGAAAGG
Statistics
Matches: 101, Mismatches: 11, Indels: 9
0.83 0.09 0.07
Matches are distributed among these distances:
75 7 0.07
76 45 0.45
79 30 0.30
80 19 0.19
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.29
Consensus pattern (75 bp):
CAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAAATACCTCA
GCGCGTGAGC
Found at i:90394785 original size:76 final size:77
Alignment explanation
Indices: 90394596--90394818 Score: 256
Period size: 79 Copynumber: 2.9 Consensus size: 77
90394586 GCCTCGATAT
* * *
90394596 GTGA-CTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAATATAAATTGAAA
1 GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTG---
* *
90394659 AAAAATACCTCAGTGT
63 -AAAATACCTCAGCGC
* *
90394675 GTGATCTGAA-GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAA
1 GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAA
*
90394739 ATAGCTCAGCGC
66 ATACCTCAGCGC
* * *
90394751 GTGAGC-CAAGGCTCAACTCACCTCTCGTAATATGAGTCGATTTTTTTTTGAAAGGCAGAAATTG
1 GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTGAAAGACAGAAATTG
90394815 AAAA
63 AAAA
90394819 ACGGAAATTG
Statistics
Matches: 126, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
75 2 0.02
76 45 0.36
79 58 0.46
80 21 0.17
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (77 bp):
GTGAGCTCAAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAGACAGAAATTGAAA
ATACCTCAGCGC
Found at i:90394878 original size:93 final size:92
Alignment explanation
Indices: 90394719--90394909 Score: 251
Period size: 93 Copynumber: 2.1 Consensus size: 92
90394709 AGTTGATTTT
* * *
90394719 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGTAATAT
1 TTGAAAAACGGAAATTGAAAATA-CTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
90394784 GAGTCGATTTTTTTTTGAAAGGCAGAAA
65 GAGTCGATTTTTTTTTGAAAGGCAGAAA
* * * ** *
90394812 TTGAAAAACGGAAATTGAAAATACTTCGGCGTGTGATCTGAGGTTCAACTCACCTCTCGCAATAT
1 TTGAAAAACGGAAATTGAAAATAC-TCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
* *
90394877 GAGTTGA--TTTTTTTGAAAGACAGAAA
65 GAGTCGATTTTTTTTTGAAAGGCAGAAA
90394903 TTGAAAA
1 TTGAAAA
90394910 TAGCTCAGCG
Statistics
Matches: 86, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
91 25 0.29
92 1 0.01
93 60 0.70
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (92 bp):
TTGAAAAACGGAAATTGAAAATACTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATG
AGTCGATTTTTTTTTGAAAGGCAGAAA
Found at i:90394941 original size:170 final size:170
Alignment explanation
Indices: 90394660--90395161 Score: 717
Period size: 170 Copynumber: 2.9 Consensus size: 170
90394650 AAATTGAAAA
* * *
90394660 AAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGAA
1 AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
*
90394724 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGTAATATGAGTC
66 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTC
90394789 GATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
131 GATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
* *
90394829 AAAATACTTCGGCGTGTGATCTGAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
* *
90394894 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTTAACTCACCTCTCACAATATGAGTC
66 AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTC
90394959 GATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
131 GATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
* * * *
90394999 AAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTTTT
1 AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTTT
* * * * * * *
90395064 GACA-ATAGAAATTGAAATTACCTCA--GCGTG-TCCTGAGGCTCAACTCACCTCTTGCAATATG
63 GAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATATG
* *
90395125 AGTTGATTTTTTTTTTTGAAAGGCAAAAATTTGAAAA
127 AGTCGA--TTTTTTTTTGAAAGGCAGAAA-TTGAAAA
90395162 TAACTCAGCA
Statistics
Matches: 300, Mismatches: 25, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
169 52 0.17
170 193 0.64
172 38 0.13
173 17 0.06
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.30
Consensus pattern (170 bp):
AAAATACCTCGGCGTGTGATCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
AGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAGTC
GATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTG
Found at i:90395056 original size:93 final size:93
Alignment explanation
Indices: 90394889--90395062 Score: 224
Period size: 93 Copynumber: 1.9 Consensus size: 93
90394879 GTTGATTTTT
* * * * *
90394889 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTTAACTCACCTCTCACAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCGCTCACAATAC
90394954 GAGTCGATTTTTTTTTGAAAGGCAGAAA
66 GAGTCGATTTTTTTTTGAAAGGCAGAAA
* * * * * *
90394982 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCGCCGCTCGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCC-AAGGCTCAACTCACCGCTCACAATA
*
90395046 CGAGTTGATTTTTTTTT
65 CGAGTCGATTTTTTTTT
90395063 TGACAATAGA
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
92 2 0.03
93 66 0.97
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.28
Consensus pattern (93 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCGCTCACAATAC
GAGTCGATTTTTTTTTGAAAGGCAGAAA
Found at i:90395415 original size:72 final size:73
Alignment explanation
Indices: 90394986--90395739 Score: 796
Period size: 72 Copynumber: 10.0 Consensus size: 73
90394976 CAGAAATTGA
* * * * *
90394986 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGT
1 AAAACAGAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGT
90395051 TGATTTTTTTTTTG
64 TGA----TTTTTTG
* * * *
90395065 ACAATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
90395130 ATTTTTTTTTTTG
66 A-----TTTTTTG
* * * * * * ** **
90395143 AAAGGCAAAAATTTGAAAATAACTCAGCATGTCTTGAGGGTCAACTCATTTCTTACAATATGAGT
1 AAA-ACAGAAA-TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
90395208 TGATTTTTTTG
64 TGA-TTTTTTG
* * ** *
90395219 AAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTT
1 -AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
90395284 GATTTTTTTTTTG
65 GA----TTTTTTG
* * * **
90395297 AAAAACAGAAATTGAAAATACCTTAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTT
1 -AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
90395362 GA-ATTTTG
65 GATTTTTTG
* **
90395370 AAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
90395435 ATTTTTTT
66 ATTTTTTG
* * * * *
90395443 AACAACAGAAATTGAAATTACCTCAGCATGTCCTCAGGCTCAACTCACCTATCGCAGTATGAGTT
1 AA-AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
90395508 GATTTTTTTG
65 GA-TTTTTTG
* * * **
90395518 TAAGA-AGAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGT
1 -AAAACAG-AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
90395582 TGA-ATTTTG
64 TGATTTTTTG
* * *
90395591 AAAATAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
90395656 A-TTTTTG
66 ATTTTTTG
* * *
90395663 AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAGTATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
90395728 ATTTTTTTG
66 A-TTTTTTG
90395737 AAA
1 AAA
90395740 CAAAAATAAA
Statistics
Matches: 595, Mismatches: 65, Indels: 35
0.86 0.09 0.05
Matches are distributed among these distances:
72 185 0.31
73 18 0.03
74 69 0.12
75 110 0.18
76 15 0.03
77 35 0.06
78 86 0.14
79 29 0.05
80 48 0.08
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (73 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTG
Found at i:90395579 original size:221 final size:222
Alignment explanation
Indices: 90394986--90395735 Score: 921
Period size: 221 Copynumber: 3.3 Consensus size: 222
90394976 CAGAAATTGA
* * * * * *
90394986 AAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATACGAGT
1 AAAACAGAAATTGAAAATACCTCAGCATGT--CCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * * * * * **
90395051 TGATTTTTTTTTTGACAATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCT
64 TGATTTTTTTTGTAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCT
* * * * * * * *
90395116 TGCAATATGAGTTGATTTTTTTTTTTGAAAGGCAAAAATTTGAAAATAACTCAGCATGTCTTGAG
129 CGCAATATGAGTTGA------ATTTTGAAA-ACAGAAA-TTGAAATTACCTCAGCGTGTCCTGAG
* **
90395181 GGTCAACTCATTTCTTACAATATGAGTTGATTTTTTT
186 GCTCAACTCATTTCTCGCAATATGAGTTGATTTTTTT
* ** *
90395218 GAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGT
1 --AAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
* * *
90395283 TGATTTTTTTTTTGAAAAACAGAAATTGAAAATACCTTAGCATGTCTTGAGGCTCAACTCATTTC
64 TGATTTTTTTTGT-AAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTC
90395348 TCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAAC
128 TCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAAC
90395413 TCATTTCTCGCAATATGAGTTGATTTTTTT
193 TCATTTCTCGCAATATGAGTTGATTTTTTT
* * * *
90395443 AACAACAGAAATTGAAATTACCTCAGCATGTCCTCAGGCTCAACTCACCTATCGCAGTATGAGTT
1 AA-AACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
90395508 GA-TTTTTTTGTAAGAAGA-AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTC
65 GATTTTTTTTGTAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTC
* *
90395571 GCAATATGAGTTGAATTTTGAAAATAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTC
130 GCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTC
** *
90395636 ACCTCTCGCAATATGAGTTGA-TTTTTG
195 ATTTCTCGCAATATGAGTTGATTTTTTT
* * * *
90395663 AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGCAGTATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
90395728 ATTTTTTT
66 ATTTTTTT
90395736 GAAACAAAAA
Statistics
Matches: 460, Mismatches: 53, Indels: 20
0.86 0.10 0.04
Matches are distributed among these distances:
219 60 0.13
220 13 0.03
221 124 0.27
222 5 0.01
223 10 0.02
224 56 0.12
225 56 0.12
226 5 0.01
227 8 0.02
232 39 0.08
233 57 0.12
234 27 0.06
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (222 bp):
AAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTTTTGTAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCG
CAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCA
TTTCTCGCAATATGAGTTGATTTTTTT
Found at i:90395708 original size:293 final size:297
Alignment explanation
Indices: 90394982--90395746 Score: 961
Period size: 293 Copynumber: 2.5 Consensus size: 297
90394972 AAGGCAGAAA
* * * * *
90394982 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCCGCTCGCAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATAT
* *
90395047 GAGTTGATTTTTTTTTTGACAATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCAC
64 GAGTTGA-----TTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCAC
* * *
90395112 CTCTTGCAATATGAGTTGATTTTTTTTTTTGAAAGGCAAAAATTTGAAAATAACTCAGCATGTCT
124 CTCTCGCAATATGAGTTGA----TTTTTTTGAAAGACAAAAATTTGAAAATAACTCAGCATGTCC
* * ** * *
90395177 TGAGGGTCAACTCATTTCTTACAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCT
185 TCAGGCTCAACTCACCTATCACAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCT
* *
90395242 CAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGATTTTTTTT
250 CAACATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGA----TATT
* * * **
90395294 TTGAAAAACAGAAATTGAAAATACCTTAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
* **
90395359 GTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCATTTCTCGC
66 GTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
* * *
90395424 AATATGAGTTGATTTTTTT-AACA-ACAGAAA-TTGAAATTACCTCAGCATGTCCTCAGGCTCAA
131 AATATGAGTTGATTTTTTTGAA-AGACAAAAATTTGAAAATAACTCAGCATGTCCTCAGGCTCAA
* * * * *
90395486 CTCACCTATCGCAGTATGAGTTGATTTTTTTGTAAGA-AGAAAATTGAAAATACCTCAACGTGTC
195 CTCACCTATCACAATATGAGTTGATTTTTTTGAAAAACAG-AAATTGAAAATACCTCAACATGTC
*
90395550 TTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-ATT
259 TTGAGGCTCAACTCATTTCTCACAATATGAGTTGATATT
* * *
90395588 TTG-AAAATAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
90395652 GTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTCTCGC
66 GTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
*
90395717 AGTATGAGTTGATTTTTTTG-AA-ACAAAAAT
131 AATATGAGTTGATTTTTTTGAAAGACAAAAAT
90395747 AAAAACATCA
Statistics
Matches: 400, Mismatches: 49, Indels: 27
0.84 0.10 0.06
Matches are distributed among these distances:
292 7 0.02
293 133 0.33
294 5 0.01
298 2 0.00
299 112 0.28
300 7 0.02
301 8 0.02
305 66 0.17
310 30 0.08
312 30 0.08
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.33
Consensus pattern (297 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGC
AATATGAGTTGATTTTTTTGAAAGACAAAAATTTGAAAATAACTCAGCATGTCCTCAGGCTCAAC
TCACCTATCACAATATGAGTTGATTTTTTTGAAAAACAGAAATTGAAAATACCTCAACATGTCTT
GAGGCTCAACTCATTTCTCACAATATGAGTTGATATT
Found at i:90404096 original size:12 final size:12
Alignment explanation
Indices: 90404074--90404109 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
90404064 TAGGATATGC
*
90404074 AATGAATGAATG
1 AATGCATGAATG
*
90404086 GATGCATGAATG
1 AATGCATGAATG
90404098 AATGCATGAATG
1 AATGCATGAATG
90404110 TCAAATGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.42, C:0.06, G:0.28, T:0.25
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:90404096 original size:16 final size:17
Alignment explanation
Indices: 90404070--90404101 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
90404060 AGTATAGGAT
90404070 ATGCAATGAATGAATGG
1 ATGCAATGAATGAATGG
90404087 ATGC-ATGAATGAATG
1 ATGCAATGAATGAATG
90404102 CATGAATGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.41, C:0.06, G:0.28, T:0.25
Consensus pattern (17 bp):
ATGCAATGAATGAATGG
Found at i:90406501 original size:11 final size:11
Alignment explanation
Indices: 90406468--90406508 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
90406458 AAATCATTTT
90406468 GAAGAGAGAAA
1 GAAGAGAGAAA
*
90406479 GAA-A-AAAAA
1 GAAGAGAGAAA
*
90406488 GAAGGGAGAAA
1 GAAGAGAGAAA
90406499 GAAGAGAGAA
1 GAAGAGAGAA
90406509 GGGAGGGGGG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
9 7 0.29
10 1 0.04
11 16 0.67
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (11 bp):
GAAGAGAGAAA
Found at i:90406980 original size:27 final size:27
Alignment explanation
Indices: 90406948--90407008 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 27
90406938 GTGGCTAGGG
90406948 TTTCTTGGTTTTTTTGGGGGTTAGGTT
1 TTTCTTGGTTTTTTTGGGGGTTAGGTT
* **
90406975 TTTCTT-TTTTTTTTTTGGGTTAGGTT
1 TTTCTTGGTTTTTTTGGGGGTTAGGTT
90407001 TTTCTTGG
1 TTTCTTGG
90407009 GGGGGCTTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 23 0.79
27 6 0.21
ACGTcount: A:0.03, C:0.05, G:0.26, T:0.66
Consensus pattern (27 bp):
TTTCTTGGTTTTTTTGGGGGTTAGGTT
Found at i:90409572 original size:5 final size:5
Alignment explanation
Indices: 90409543--90409581 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
90409533 TAAATTTAGC
* *
90409543 TCAAT TTAAT ACAAT TCATAT TCAAT TCAAT TCAAT TCA
1 TCAAT TCAAT TCAAT TCA-AT TCAAT TCAAT TCAAT TCA
90409582 CATTTTAGGT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (5 bp):
TCAAT
Found at i:90413353 original size:35 final size:34
Alignment explanation
Indices: 90413305--90413384 Score: 90
Period size: 35 Copynumber: 2.3 Consensus size: 34
90413295 CAGAACCAAT
*
90413305 CAGATGCAGATTCGAACCTAAGCCCAT-TACAGTCA
1 CAGATGCAGATTCGAACCTAAACCCATCTA-AGT-A
* **
90413340 CAGATGCATATTCGGGCCTAAACCCATCTAAGTA
1 CAGATGCAGATTCGAACCTAAACCCATCTAAGTA
*
90413374 CAGATACAGAT
1 CAGATGCAGAT
90413385 ATACAAATCA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
34 10 0.26
35 26 0.68
36 2 0.05
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.21
Consensus pattern (34 bp):
CAGATGCAGATTCGAACCTAAACCCATCTAAGTA
Found at i:90416898 original size:19 final size:19
Alignment explanation
Indices: 90416852--90416898 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
90416842 ATTAAGATTG
* *
90416852 AAAAATATTTTTTAAGTCA
1 AAAAATAATTTTTAAGCCA
**
90416871 AATCA-AATTTTTAAGCCA
1 AAAAATAATTTTTAAGCCA
90416889 AAAAATAATT
1 AAAAATAATT
90416899 GTAAGTAGAT
Statistics
Matches: 21, Mismatches: 6, Indels: 2
0.72 0.21 0.07
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.51, C:0.09, G:0.04, T:0.36
Consensus pattern (19 bp):
AAAAATAATTTTTAAGCCA
Found at i:90417265 original size:23 final size:24
Alignment explanation
Indices: 90417206--90417267 Score: 60
Period size: 23 Copynumber: 2.7 Consensus size: 24
90417196 TGGCGTATTC
90417206 AAATTAAAA-TTTATAAATAATTT
1 AAATTAAAATTTTATAAATAATTT
* *
90417229 ATATT-AATTGTTTA-AAAT-ATTT
1 AAATTAAAAT-TTTATAAATAATTT
90417251 AAAATTAAAATTTTATA
1 -AAATTAAAATTTTATA
90417268 TGTCATATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 9
0.70 0.09 0.21
Matches are distributed among these distances:
22 6 0.20
23 16 0.53
24 8 0.27
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (24 bp):
AAATTAAAATTTTATAAATAATTT
Found at i:90417854 original size:6 final size:6
Alignment explanation
Indices: 90417843--90417877 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
90417833 TAACCTTCAA
*
90417843 ATAATT ATAATT ATAATT AGATATT ATAATT ATAA
1 ATAATT ATAATT ATAATT ATA-ATT ATAATT ATAA
90417878 AGGAATTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
6 21 0.81
7 5 0.19
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (6 bp):
ATAATT
Found at i:90418816 original size:23 final size:24
Alignment explanation
Indices: 90418790--90418846 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 24
90418780 AATATATTAT
*
90418790 AAAAT-TATACTTTAATCCCCTTA
1 AAAATATATAATTTAATCCCCTTA
* * *
90418813 AAAATATTTAATTTAATCTCTTTA
1 AAAATATATAATTTAATCCCCTTA
90418837 AAAATA-ATAA
1 AAAATATATAA
90418847 AAAATATAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
23 8 0.29
24 20 0.71
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.40
Consensus pattern (24 bp):
AAAATATATAATTTAATCCCCTTA
Found at i:90418947 original size:23 final size:23
Alignment explanation
Indices: 90418921--90418966 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
90418911 ATTTTTAACT
90418921 TAGCCAAACCTCCATTAAACCAA
1 TAGCCAAACCTCCATTAAACCAA
*
90418944 TAGCCAAGCCTCCATTAAACCAA
1 TAGCCAAACCTCCATTAAACCAA
90418967 GGGCTATTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.41, C:0.35, G:0.07, T:0.17
Consensus pattern (23 bp):
TAGCCAAACCTCCATTAAACCAA
Found at i:90427228 original size:21 final size:21
Alignment explanation
Indices: 90427211--90427251 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
90427201 TTGTTGCTAA
90427211 AGGTGTTGCATATCTTGCAAC
1 AGGTGTTGCATATCTTGCAAC
90427232 AGGTGTTGCATATCTTGCAA
1 AGGTGTTGCATATCTTGCAA
90427252 GAACTACATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.34
Consensus pattern (21 bp):
AGGTGTTGCATATCTTGCAAC
Done.