Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 265 of 295
Found at i:90920094 original size:54 final size:54
Alignment explanation
Indices: 90920019--90920465 Score: 504
Period size: 54 Copynumber: 8.3 Consensus size: 54
90920009 TTAGTTTACC
* * * *
90920019 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAACACCATTGGTTTATG
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * **
90920073 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATA-CTTTAGTTTACC
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * *
90920126 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAACACCCTTGGTTTATG
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
90920180 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
90920234 AAATTACCAAAATACCCCTGGTTTGTAAAA-TACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * *
90920287 AAATTACCAAAGTACCCCTGGTTTGTAAAATTACCAAAGTACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * * * * *
90920341 AAATTATCAAAATACCCCTAGTTTATAAAATTACCAAAATACCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
** *** ** * ** *
90920395 AAATTACTGAAATA-CCCTCGACCTGTAAAATTATTAAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
*
90920449 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
90920466 TTGATTTACA
Statistics
Matches: 334, Mismatches: 55, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
53 98 0.29
54 234 0.70
55 2 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:90920189 original size:107 final size:108
Alignment explanation
Indices: 90920009--90920398 Score: 550
Period size: 107 Copynumber: 3.6 Consensus size: 108
90919999 TTAGAATACT
* * *
90920009 TTAGTTTACCAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAACACCATTGGTTTATGA
1 TTAGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAACACCCTTGGTTTATGA
*
90920074 AATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATA-CT
66 AATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
*
90920116 TTAGTTTACCAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAACACCCTTGGTTTATGA
1 TTAGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAACACCCTTGGTTTATGA
90920181 AATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
66 AATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
* * * * *
90920224 TTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAA-TACTAAAATACCCTTTGTTTATAA
1 TTAGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAACACCCTTGGTTTATGA
* * *
90920288 AATTACCAAAGTACCCCTGGTTTGTAAAATTACCAAAGTACCC
66 AATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
* * ** * * * * * * *
90920331 CTGGTTTGTAAAATTATCAAAATACCCCTAGTTTATAAAATTACCAAAATACCCCTGATTTGTGA
1 TTAGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAACACCCTTGGTTTATGA
90920396 AAT
66 AAT
90920399 TACTGAAATA
Statistics
Matches: 257, Mismatches: 24, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
107 198 0.77
108 59 0.23
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.31
Consensus pattern (108 bp):
TTAGTTTACAAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAACACCCTTGGTTTATGA
AATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC
Found at i:90920480 original size:27 final size:26
Alignment explanation
Indices: 90920013--90920521 Score: 141
Period size: 27 Copynumber: 18.9 Consensus size: 26
90920003 AATACTTTAG
* * *
90920013 TTTACCAAATTACCAAAATACCCCTGG
1 TTTACAAAATTACC-AAATACCCTTGA
** * *
90920040 TTTGTAAAATTACTAAA-ACACCATTGG
1 TTTACAAAATTACCAAATAC-CC-TTGA
** * * *
90920067 TTTATGAAATCACCAAAATACCCCTGG
1 TTTACAAAATTACC-AAATACCCTTGA
** *
90920094 TTTGTAAAATTACCAAAATA--CTTTA
1 TTTACAAAATTACC-AAATACCCTTGA
* *
90920119 GTTTACCAAATTACCAAAATACCCCT-A
1 -TTTACAAAATTACC-AAATACCCTTGA
** * * *
90920146 GTTTGTAAAATTACTAAAACACCCTTGG
1 -TTTACAAAATTAC-CAAATACCCTTGA
** * * *
90920174 TTTATGAAATCACCAAAATACCCCTGG
1 TTTACAAAATTACC-AAATACCCTTGA
** *
90920201 TTTGTAAAATTACCAAAATACCCTTGG
1 TTTACAAAATTACC-AAATACCCTTGA
* *
90920228 TTTACAAAATTACCAAAATACCCCTGG
1 TTTACAAAATTACC-AAATACCCTTGA
** *
90920255 TTTGTAAAA-TACTAAAATACCCTTTG-
1 TTTACAAAATTAC-CAAATACCC-TTGA
* * *
90920281 TTTATAAAATTACCAAAGTACCCCTGG
1 TTTACAAAATTACCAAA-TACCCTTGA
** * *
90920308 TTTGTAAAATTACCAAAGTACCCCTGG
1 TTTACAAAATTACCAAA-TACCCTTGA
** * *
90920335 TTTGTAAAATTATCAAAATACCCCT-A
1 TTTACAAAATTA-CCAAATACCCTTGA
* *
90920361 GTTTATAAAATTACCAAAATACCCCTGA
1 -TTTACAAAATTACC-AAATACCCTTGA
*** * *
90920389 TTTGTGAAATTACTGAAATACCCTCGA
1 TTTACAAAATTAC-CAAATACCCTTGA
** ** ** *
90920416 CCTGTAAAATTATTAAAATACCCTCGA
1 TTTACAAAATTA-CCAAATACCCTTGA
* **
90920443 CTTGTAAAATTACCAAAGTACCCTTGA
1 TTTACAAAATTACCAAA-TACCCTTGA
* *** *
90920470 TTTACAGAATTACCGTTTTACCCTCGA
1 TTTACAAAATTACC-AAATACCCTTGA
90920497 TTTACAAAATTACCGAAATACCCTT
1 TTTACAAAATTACC-AAATACCCTT
90920522 ATAGGGTAGA
Statistics
Matches: 380, Mismatches: 79, Indels: 46
0.75 0.16 0.09
Matches are distributed among these distances:
25 4 0.01
26 50 0.13
27 312 0.82
28 12 0.03
29 2 0.01
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (26 bp):
TTTACAAAATTACCAAATACCCTTGA
Found at i:90920541 original size:27 final size:27
Alignment explanation
Indices: 90920504--90920653 Score: 140
Period size: 27 Copynumber: 5.6 Consensus size: 27
90920494 CGATTTACAA
* *
90920504 AATTACCGAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
* * * *
90920531 AAATACTGAAATACCCTTGTAGAGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
* * *
90920558 AATTACCGAAATACCCCTGTATGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
*
90920585 AATTA-TCGCAATACCCCTATAGGGTAG
1 AATTACT-GAAATACCCCTATAGGGTAG
* * * *
90920612 AATTACTAAAATACCCCTGTATGGTGG
1 AATTACTGAAATACCCCTATAGGGTAG
* *
90920639 AATTACCGAGATACC
1 AATTACTGAAATACC
90920654 TTGTGGGGGA
Statistics
Matches: 100, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
27 99 0.99
28 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTATAGGGTAG
Found at i:90920573 original size:81 final size:81
Alignment explanation
Indices: 90920502--90920653 Score: 207
Period size: 81 Copynumber: 1.9 Consensus size: 81
90920492 CTCGATTTAC
* * *
90920502 AAAATTACCGAAATACCCTTATAGGGTAGAAATACTGAAATACCCTTGTA-GAGTAGAATTACCG
1 AAAATTACCGAAATACCCCTATAGGGTAGAAATACTAAAATACCCCTGTATG-GTAGAATTACCG
90920566 AAATACCCCTGTATGGT
65 AAATACCCCTGTATGGT
* * * * *
90920583 AGAATTATCGCAATACCCCTATAGGGTAGAATTACTAAAATACCCCTGTATGGTGGAATTACCGA
1 AAAATTACCGAAATACCCCTATAGGGTAGAAATACTAAAATACCCCTGTATGGTAGAATTACCGA
*
90920648 GATACC
66 AATACC
90920654 TTGTGGGGGA
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
81 60 0.98
82 1 0.02
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.26
Consensus pattern (81 bp):
AAAATTACCGAAATACCCCTATAGGGTAGAAATACTAAAATACCCCTGTATGGTAGAATTACCGA
AATACCCCTGTATGGT
Found at i:90920630 original size:54 final size:54
Alignment explanation
Indices: 90920504--90920643 Score: 156
Period size: 54 Copynumber: 2.6 Consensus size: 54
90920494 CGATTTACAA
* * * * * * * *
90920504 AATTACCGAAATACCCTTATAGGGTAGAAATA-CTGAAATACCCTTGTAGAGTAG
1 AATTACCAAAATACCCCTGTATGGTAGAATTATC-GCAATACCCCTATAGAGTAG
* *
90920558 AATTACCGAAATACCCCTGTATGGTAGAATTATCGCAATACCCCTATAGGGTAG
1 AATTACCAAAATACCCCTGTATGGTAGAATTATCGCAATACCCCTATAGAGTAG
* *
90920612 AATTACTAAAATACCCCTGTATGGTGGAATTA
1 AATTACCAAAATACCCCTGTATGGTAGAATTA
90920644 CCGAGATACC
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
54 73 0.99
55 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (54 bp):
AATTACCAAAATACCCCTGTATGGTAGAATTATCGCAATACCCCTATAGAGTAG
Found at i:90921081 original size:20 final size:20
Alignment explanation
Indices: 90921041--90921081 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
90921031 TGTGTGCCAT
* * *
90921041 TATTGTGGGCTTCTTATCGA
1 TATTGTAGGCTTCGTACCGA
90921061 TATTGTAGGCTTCGTACCGA
1 TATTGTAGGCTTCGTACCGA
90921081 T
1 T
90921082 TATAGACCTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.17, C:0.17, G:0.24, T:0.41
Consensus pattern (20 bp):
TATTGTAGGCTTCGTACCGA
Found at i:90921344 original size:27 final size:26
Alignment explanation
Indices: 90921314--90921395 Score: 92
Period size: 27 Copynumber: 3.0 Consensus size: 26
90921304 ATTCTGTTAA
* *
90921314 GTGGCTTTGCCACATTATCTGATTCTG
1 GTGGCTATGCCACAATATCTG-TTCTG
90921341 GTGGCTATGCCACAAATATCTGTATCTG
1 GTGGCTATGCCAC-AATATCTGT-TCTG
* * *
90921369 GTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTATGCCACAATATCTGTTCTG
90921395 G
1 G
90921396 CAGCAATGCT
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
26 5 0.10
27 22 0.46
28 21 0.44
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.37
Consensus pattern (26 bp):
GTGGCTATGCCACAATATCTGTTCTG
Found at i:90921579 original size:6 final size:6
Alignment explanation
Indices: 90921514--90921622 Score: 73
Period size: 6 Copynumber: 17.7 Consensus size: 6
90921504 ATTCACATTT
* * *
90921514 TGATTT TGATTC TG-TTACC TGATAC TGATTT TGATTC TGATTC T-ATTACC
1 TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGATTC TGATT--C
* * *
90921564 TGATAC TGATTT TGATTC TGATTC TG-TCACC TGATTC TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGATTC TGAT--TC TGATTC TGATTC TGATTC
90921613 T-AGTTC TGAT
1 TGA-TTC TGAT
90921623 AATGTTTCTT
Statistics
Matches: 81, Mismatches: 11, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
5 7 0.09
6 61 0.75
7 9 0.11
8 4 0.05
ACGTcount: A:0.19, C:0.17, G:0.16, T:0.49
Consensus pattern (6 bp):
TGATTC
Found at i:90921620 original size:31 final size:31
Alignment explanation
Indices: 90921510--90921613 Score: 163
Period size: 31 Copynumber: 3.4 Consensus size: 31
90921500 TTGCATTCAC
*
90921510 ATTTTGATTTTGATTCTGTTACCTGATACTG
1 ATTTTGATTCTGATTCTGTTACCTGATACTG
*
90921541 ATTTTGATTCTGATTCTATTACCTGATACTG
1 ATTTTGATTCTGATTCTGTTACCTGATACTG
* *
90921572 ATTTTGATTCTGATTCTGTCACCTGATTCTG
1 ATTTTGATTCTGATTCTGTTACCTGATACTG
*
90921603 ATTCTGATTCT
1 ATTTTGATTCT
90921614 AGTTCTGATA
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 67 1.00
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTTTGATTCTGATTCTGTTACCTGATACTG
Found at i:90923728 original size:19 final size:18
Alignment explanation
Indices: 90923700--90923743 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 18
90923690 ACGAAAATTT
*
90923700 AATTAGTATTATTAGATAA
1 AATTATTATTATTAGA-AA
90923719 AATTATTATTATTAGAAA
1 AATTATTATTATTAGAAA
90923737 AA-TATTA
1 AATTATTA
90923744 CTGCATGTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 5 0.21
18 4 0.17
19 15 0.62
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (18 bp):
AATTATTATTATTAGAAA
Found at i:90925575 original size:8 final size:8
Alignment explanation
Indices: 90925558--90925587 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
90925548 CTAGATCGGC
*
90925558 AAAAGTCG
1 AAAAGCCG
90925566 AAAAGCCG
1 AAAAGCCG
90925574 AAAAGCCG
1 AAAAGCCG
90925582 AAAAGC
1 AAAAGC
90925588 TGGCATTTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.53, C:0.20, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:90925987 original size:8 final size:8
Alignment explanation
Indices: 90925970--90925999 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
90925960 CTAGATCGGC
*
90925970 AAAAGTCG
1 AAAAGCCG
90925978 AAAAGCCG
1 AAAAGCCG
90925986 AAAAGCCG
1 AAAAGCCG
90925994 AAAAGC
1 AAAAGC
90926000 TAGCATTTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.53, C:0.20, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:90926211 original size:412 final size:412
Alignment explanation
Indices: 90925447--90926273 Score: 1627
Period size: 412 Copynumber: 2.0 Consensus size: 412
90925437 TTGCGATTGG
90925447 ATTCATAGTTAACATATAAGTGATTGACTGTAGGCAACTCGTGTGTGGAACTCGTCAGCATATCG
1 ATTCATAGTTAACATATAAGTGATTGACTGTAGGCAACTCGTGTGTGGAACTCGTCAGCATATCG
90925512 TTGCAAACAGGTGTGTAAACGACACCCACTCATAGACTAGATCGGCAAAAGTCGAAAAGCCGAAA
66 TTGCAAACAGGTGTGTAAACGACACCCACTCATAGACTAGATCGGCAAAAGTCGAAAAGCCGAAA
*
90925577 AGCCGAAAAGCTGGCATTTGTGAACTTGCGAGCGTGCAAGCGCTTGTGAGGTGGTTTGGTTGTTA
131 AGCCGAAAAGCTAGCATTTGTGAACTTGCGAGCGTGCAAGCGCTTGTGAGGTGGTTTGGTTGTTA
90925642 ATTTTGGTAATCATAAGCAGTATGATTGCAGAGTGCGCAATTTCGTGCACTTCGGTATATTTGGG
196 ATTTTGGTAATCATAAGCAGTATGATTGCAGAGTGCGCAATTTCGTGCACTTCGGTATATTTGGG
90925707 CTTAATGGGCCGAAAACGGGTTAGTGGGCCAACGGGCCCAATTCGGTAAAAACGCTCGATAAGTG
261 CTTAATGGGCCGAAAACGGGTTAGTGGGCCAACGGGCCCAATTCGGTAAAAACGCTCGATAAGTG
*
90925772 CTTCTGTTAATGTGTTAATGGTTAGAATATGTATGTAAACCCTAAAACATTTAAATTACTAGACT
326 CTTCTGTTAATGTGTTAATGGTTAGAATATGTATGTAAACCCTAAAACATTTAAATTACTAGAAT
90925837 ACCCTTAAGTATGAAAATTACC
391 ACCCTTAAGTATGAAAATTACC
90925859 ATTCATAGTTAACATATAAGTGATTGACTGTAGGCAACTCGTGTGTGGAACTCGTCAGCATATCG
1 ATTCATAGTTAACATATAAGTGATTGACTGTAGGCAACTCGTGTGTGGAACTCGTCAGCATATCG
90925924 TTGCAAACAGGTGTGTAAACGACACCCACTCATAGACTAGATCGGCAAAAGTCGAAAAGCCGAAA
66 TTGCAAACAGGTGTGTAAACGACACCCACTCATAGACTAGATCGGCAAAAGTCGAAAAGCCGAAA
90925989 AGCCGAAAAGCTAGCATTTGTGAACTTGCGAGCGTGCAAGCGCTTGTGAGGTGGTTTGGTTGTTA
131 AGCCGAAAAGCTAGCATTTGTGAACTTGCGAGCGTGCAAGCGCTTGTGAGGTGGTTTGGTTGTTA
90926054 ATTTTGGTAATCATAAGCAGTATGATTGCAGAGTGCGCAATTTCGTGCACTTCGGTATATTTGGG
196 ATTTTGGTAATCATAAGCAGTATGATTGCAGAGTGCGCAATTTCGTGCACTTCGGTATATTTGGG
*
90926119 CTTAATGGGCCGAAAATGGGTTAGTGGGCCAACGGGCCCAATTCGGTAAAAACGCTCGATAAGTG
261 CTTAATGGGCCGAAAACGGGTTAGTGGGCCAACGGGCCCAATTCGGTAAAAACGCTCGATAAGTG
90926184 CTTCTGTTAATGTGTTAATGGTTAGAATATGTATGTAAACCCTAAAACATTTAAATTACTAGAAT
326 CTTCTGTTAATGTGTTAATGGTTAGAATATGTATGTAAACCCTAAAACATTTAAATTACTAGAAT
90926249 ACCCTTAAGTATGAAAATTACC
391 ACCCTTAAGTATGAAAATTACC
90926271 ATT
1 ATT
90926274 TTACCTCTAG
Statistics
Matches: 412, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
412 412 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (412 bp):
ATTCATAGTTAACATATAAGTGATTGACTGTAGGCAACTCGTGTGTGGAACTCGTCAGCATATCG
TTGCAAACAGGTGTGTAAACGACACCCACTCATAGACTAGATCGGCAAAAGTCGAAAAGCCGAAA
AGCCGAAAAGCTAGCATTTGTGAACTTGCGAGCGTGCAAGCGCTTGTGAGGTGGTTTGGTTGTTA
ATTTTGGTAATCATAAGCAGTATGATTGCAGAGTGCGCAATTTCGTGCACTTCGGTATATTTGGG
CTTAATGGGCCGAAAACGGGTTAGTGGGCCAACGGGCCCAATTCGGTAAAAACGCTCGATAAGTG
CTTCTGTTAATGTGTTAATGGTTAGAATATGTATGTAAACCCTAAAACATTTAAATTACTAGAAT
ACCCTTAAGTATGAAAATTACC
Found at i:90926722 original size:27 final size:28
Alignment explanation
Indices: 90926683--90926795 Score: 90
Period size: 28 Copynumber: 3.9 Consensus size: 28
90926673 ACTTGTAATA
90926683 GGGCTACGGCCCAGATTAATACTGATAT
1 GGGCTACGGCCCAGATTAATACTGATAT
*
90926711 GGGCTA-GGCCCA-ATATACTCTGATACTG-TAAG
1 GGGCTACGGCCCAGAT-TA-----ATACTGAT-AT
* *
90926743 GGGCTATGGCCCAGATTAATATTGATAT
1 GGGCTACGGCCCAGATTAATACTGATAT
* *
90926771 GGGCTAAGGCCCAG-TTAACACTGAT
1 GGGCTACGGCCCAGATTAATACTGAT
90926796 TTCTGAATAG
Statistics
Matches: 69, Mismatches: 6, Indels: 21
0.72 0.06 0.22
Matches are distributed among these distances:
26 2 0.03
27 17 0.25
28 25 0.36
29 1 0.01
31 1 0.01
32 13 0.19
33 8 0.12
34 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (28 bp):
GGGCTACGGCCCAGATTAATACTGATAT
Found at i:90926723 original size:60 final size:59
Alignment explanation
Indices: 90926647--90926783 Score: 170
Period size: 60 Copynumber: 2.3 Consensus size: 59
90926637 AACTGTGTTA
* *
90926647 ATATGGGCAAGACCCAATATA-TCTCGACT-TGTAATAGGGCTACGGCCCAGATTAATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GA-TATGTAA-AGGGCTACGGCCCAGATTAATACTG
* * *
90926707 ATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATA-TGTAAAGGGCTACGGCCCAGATTAATACTG
90926767 ATATGGGCTAAGGCCCA
1 ATATGGGCT-AGGCCCA
90926784 GTTAACACTG
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
59 1 0.01
60 52 0.76
61 15 0.22
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATACTCTGATATGTAAAGGGCTACGGCCCAGATTAATACTG
Found at i:90935736 original size:20 final size:21
Alignment explanation
Indices: 90935687--90935742 Score: 62
Period size: 20 Copynumber: 2.7 Consensus size: 21
90935677 TTTAGGAATA
*
90935687 TTTTCATAG-TTTAAGTAATTT
1 TTTTCAT-GTTTTATGTAATTT
*
90935708 TTTTTATGTTTTATGTAA-TT
1 TTTTCATGTTTTATGTAATTT
*
90935728 TTTTCATGTATTATG
1 TTTTCATGTTTTATG
90935743 AAATATTTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 16 0.53
21 14 0.47
ACGTcount: A:0.23, C:0.04, G:0.11, T:0.62
Consensus pattern (21 bp):
TTTTCATGTTTTATGTAATTT
Found at i:90935951 original size:53 final size:53
Alignment explanation
Indices: 90935865--90935998 Score: 162
Period size: 53 Copynumber: 2.5 Consensus size: 53
90935855 TGAATTACAA
* * * *
90935865 AATTTCTTTGAAATCTTTTTATGTTTTAAGTAATTCTTTCTTAAATC-ATAGATT
1 AATTTCTTAGAACTC-TTTTATGTTTTAAGTAATTCTTTCATAAATCGA-AAATT
* ***
90935919 AATTTCTTAGAACTCTTTCATGTTTTAAGTAATTCTTTCATCTGTCGAAAATT
1 AATTTCTTAGAACTCTTTTATGTTTTAAGTAATTCTTTCATAAATCGAAAATT
*
90935972 AATTTCTTAGAACACTTTTATGTTTTA
1 AATTTCTTAGAACTCTTTTATGTTTTA
90935999 TGAATTACTT
Statistics
Matches: 69, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
53 55 0.80
54 14 0.20
ACGTcount: A:0.29, C:0.12, G:0.08, T:0.51
Consensus pattern (53 bp):
AATTTCTTAGAACTCTTTTATGTTTTAAGTAATTCTTTCATAAATCGAAAATT
Found at i:90936056 original size:58 final size:58
Alignment explanation
Indices: 90935986--90936128 Score: 155
Period size: 58 Copynumber: 2.5 Consensus size: 58
90935976 TCTTAGAACA
* * **
90935986 CTTTTATGTTTTATGAATTACTTAATTTCT-TAGAAACT-TTATCATGTTTTAAACATTT
1 CTTTTATATTTTACGAATTACTTAATTT-TGTAGAAA-TATTATCATGTTTTAAACAACT
* * * * **
90936044 CTTTTATATTTTACGAATTGCTTAGTTTTGTGGAAATATTTTCATGTTTTAAGTAACT
1 CTTTTATATTTTACGAATTACTTAATTTTGTAGAAATATTATCATGTTTTAAACAACT
*
90936102 CTTTTATATTTTAGGAATTACTTAATT
1 CTTTTATATTTTACGAATTACTTAATT
90936129 ATTAATAATT
Statistics
Matches: 70, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
57 2 0.03
58 68 0.97
ACGTcount: A:0.28, C:0.09, G:0.10, T:0.53
Consensus pattern (58 bp):
CTTTTATATTTTACGAATTACTTAATTTTGTAGAAATATTATCATGTTTTAAACAACT
Found at i:90940854 original size:31 final size:31
Alignment explanation
Indices: 90940816--90940877 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
90940806 ATAACTATGG
90940816 TCTTGCGTATGATCACTTATCACCTTTTGAA
1 TCTTGCGTATGATCACTTATCACCTTTTGAA
90940847 TCTTGCGTATGATCACTTATCACCTTTTGAA
1 TCTTGCGTATGATCACTTATCACCTTTTGAA
90940878 GTCATAGTCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.42
Consensus pattern (31 bp):
TCTTGCGTATGATCACTTATCACCTTTTGAA
Found at i:90944384 original size:68 final size:69
Alignment explanation
Indices: 90944248--90944385 Score: 174
Period size: 68 Copynumber: 2.0 Consensus size: 69
90944238 TTGGAGTATT
*
90944248 ATTTATTTGTATGTTTTTCACTTAAGTACTATAAAAAAAACTAAATAAATACTAAGATGGTATAT
1 ATTTATTTGTATGTTCTTCACTTAAGTACTAT-AAAAAAACTAAATAAATACTAAGATGGTATAT
90944313 TTGAG
65 TTGAG
* * * * *
90944318 ATTTATTTGTATGCTTCTT-ACTTAATTAGTAT-AAAAAACTAATTAAATATTGAA-ATGGTATG
1 ATTTATTTGTATG-TTCTTCACTTAAGTACTATAAAAAAACTAAATAAATACT-AAGATGGTATA
90944380 TTTGAG
64 TTTGAG
90944386 GTTTCCAGGG
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
68 30 0.50
69 2 0.03
70 24 0.40
71 4 0.07
ACGTcount: A:0.39, C:0.07, G:0.12, T:0.42
Consensus pattern (69 bp):
ATTTATTTGTATGTTCTTCACTTAAGTACTATAAAAAAACTAAATAAATACTAAGATGGTATATT
TGAG
Found at i:90944947 original size:9 final size:10
Alignment explanation
Indices: 90944933--90944957 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
90944923 AGTAAAAATG
90944933 TTTTTTTATT
1 TTTTTTTATT
90944943 TTTTTTTATT
1 TTTTTTTATT
90944953 TTTTT
1 TTTTT
90944958 ATGTAGTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTATT
Found at i:90954801 original size:24 final size:26
Alignment explanation
Indices: 90954774--90954821 Score: 73
Period size: 24 Copynumber: 1.9 Consensus size: 26
90954764 TAGGCTTTAA
90954774 CCTTATTTATTTT-T-TCATTTTGAT
1 CCTTATTTATTTTATGTCATTTTGAT
*
90954798 CCTTATTTTTTTTATGTCATTTTG
1 CCTTATTTATTTTATGTCATTTTG
90954822 GCCCTCAACC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 12 0.57
25 1 0.05
26 8 0.38
ACGTcount: A:0.15, C:0.12, G:0.06, T:0.67
Consensus pattern (26 bp):
CCTTATTTATTTTATGTCATTTTGAT
Found at i:90970695 original size:28 final size:31
Alignment explanation
Indices: 90970664--90970720 Score: 84
Period size: 29 Copynumber: 1.9 Consensus size: 31
90970654 TCTTTAACGT
90970664 TTTTCT-CTTTCTTTTT-C-TTCTTTTGTTG
1 TTTTCTACTTTCTTTTTGCTTTCTTTTGTTG
*
90970692 TTTTCTATTTTCTTTTTGCTTTCTTTTGT
1 TTTTCTACTTTCTTTTTGCTTTCTTTTGT
90970721 AAGCTGTTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 6 0.24
29 9 0.36
30 1 0.04
31 9 0.36
ACGTcount: A:0.02, C:0.16, G:0.07, T:0.75
Consensus pattern (31 bp):
TTTTCTACTTTCTTTTTGCTTTCTTTTGTTG
Found at i:90971704 original size:21 final size:20
Alignment explanation
Indices: 90971680--90971719 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
90971670 CACGTATTTT
90971680 AATGATTGATGATAGATTATG
1 AATGATTGATGATAG-TTATG
*
90971701 AATGTTTGATGATAGTTAT
1 AATGATTGATGATAGTTAT
90971720 ACAAGTTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.35, C:0.00, G:0.23, T:0.42
Consensus pattern (20 bp):
AATGATTGATGATAGTTATG
Found at i:90971727 original size:20 final size:21
Alignment explanation
Indices: 90971685--90971727 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
90971675 ATTTTAATGA
*
90971685 TTGATGATAGATTATGAATGT
1 TTGATGATAGATTATGAAAGT
90971706 TTGATGATAG-TTAT-ACAAGT
1 TTGATGATAGATTATGA-AAGT
90971726 TT
1 TT
90971728 TGTAAAGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 1 0.05
20 9 0.45
21 10 0.50
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (21 bp):
TTGATGATAGATTATGAAAGT
Found at i:90989681 original size:44 final size:42
Alignment explanation
Indices: 90989592--90989701 Score: 114
Period size: 44 Copynumber: 2.6 Consensus size: 42
90989582 GCCACTGTCT
* * **
90989592 CAGACAGGGTCTTACACGAAATCAAATACGATGCCGATGTCC
1 CAGACATGGTCTTACACGAAATCAAATACGATGCCAACATCC
*
90989634 CAGACATGGTCTTACACGTAAATCTCAAAT-CGATGCTAACATCC
1 CAGACATGGTCTTACACG-AAA--TCAAATACGATGCCAACATCC
* * *
90989678 CAGACGTAGTCTTACACAAAATCA
1 CAGACATGGTCTTACACGAAATCA
90989702 CATATCGAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
41 3 0.05
42 17 0.30
43 6 0.11
44 25 0.44
45 6 0.11
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.22
Consensus pattern (42 bp):
CAGACATGGTCTTACACGAAATCAAATACGATGCCAACATCC
Found at i:90990010 original size:15 final size:17
Alignment explanation
Indices: 90989989--90990028 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
90989979 GATCTAACCA
90989989 CATTCAAATTTGA-ATT
1 CATTCAAATTTGACATT
*
90990005 -ATTC-AATTTTACATT
1 CATTCAAATTTGACATT
90990020 CATTCAAAT
1 CATTCAAAT
90990029 CAATCCATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 5
0.77 0.04 0.19
Matches are distributed among these distances:
14 6 0.30
15 7 0.35
16 4 0.20
17 3 0.15
ACGTcount: A:0.38, C:0.15, G:0.03, T:0.45
Consensus pattern (17 bp):
CATTCAAATTTGACATT
Found at i:90990805 original size:13 final size:13
Alignment explanation
Indices: 90990787--90990811 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
90990777 CACAAACGAT
90990787 AAAATTTTCACAC
1 AAAATTTTCACAC
90990800 AAAATTTTCACA
1 AAAATTTTCACA
90990812 GATATCAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.32
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:90990980 original size:21 final size:24
Alignment explanation
Indices: 90990956--90991004 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
90990946 AAATGCTATC
90990956 TACAAA-TCAAATC-TTT-AAGAT
1 TACAAAGTCAAATCTTTTAAAGAT
*
90990977 TACAAAGTCATATCTTTTAAAGAT
1 TACAAAGTCAAATCTTTTAAAGAT
90991001 TACA
1 TACA
90991005 TATTATATCT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 6 0.25
22 6 0.25
23 3 0.12
24 9 0.38
ACGTcount: A:0.45, C:0.14, G:0.06, T:0.35
Consensus pattern (24 bp):
TACAAAGTCAAATCTTTTAAAGAT
Found at i:90994727 original size:21 final size:23
Alignment explanation
Indices: 90994687--90994730 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 23
90994677 ACAAAAACTG
*
90994687 GCTTTGCCCATGTATATCACACA
1 GCTTGGCCCATGTATATCACACA
90994710 GCTTGGCCCA-GT-TATCACACA
1 GCTTGGCCCATGTATATCACACA
90994731 CCCGTGTGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 9 0.45
22 2 0.10
23 9 0.45
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (23 bp):
GCTTGGCCCATGTATATCACACA
Found at i:91006571 original size:32 final size:32
Alignment explanation
Indices: 91006530--91006591 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
91006520 CAACCTAGTT
*
91006530 TGCATTGATTTGGGAATGAAAATAGATTGAAG
1 TGCATTGATTTGGGAACGAAAATAGATTGAAG
91006562 TGCATTGATTTGGGAACGAAAATAGATTGA
1 TGCATTGATTTGGGAACGAAAATAGATTGA
91006592 GGTGGGCTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.37, C:0.05, G:0.27, T:0.31
Consensus pattern (32 bp):
TGCATTGATTTGGGAACGAAAATAGATTGAAG
Found at i:91021583 original size:45 final size:46
Alignment explanation
Indices: 91021530--91021724 Score: 161
Period size: 46 Copynumber: 4.3 Consensus size: 46
91021520 CGTCTCCCAT
*
91021530 CCATGGTCTTATTTATCTT-TGACATGATGCCATAGTATCTTTCAA
1 CCATGGTCTTACTTATCTTCTGACATGATGCCATAGTATCTTTCAA
* * * * *
91021575 CTATGGTCTTACTTATTTTCTGTCATGTTGCCATGGTATCTTTCAA
1 CCATGGTCTTACTTATCTTCTGACATGATGCCATAGTATCTTTCAA
* * *
91021621 CCATGGTCTT-GTTCAT-TTCAT-ATCATGTTGACAT-GATATCTTTCAA
1 CCATGGTCTTACTT-ATCTTC-TGA-CATGATGCCATAG-TATCTTTCAA
** * * *
91021667 CCATGGTCTTACACAT-TTCAT-ATCAGGTTGCCATGGTATCTTTCAA
1 CCATGGTCTTACTTATCTTC-TGA-CATGATGCCATAGTATCTTTCAA
91021713 CCATGGTCTTAC
1 CCATGGTCTTAC
91021725 ACATTTCATA
Statistics
Matches: 128, Mismatches: 15, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
45 22 0.17
46 105 0.82
47 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.14, T:0.42
Consensus pattern (46 bp):
CCATGGTCTTACTTATCTTCTGACATGATGCCATAGTATCTTTCAA
Found at i:91021738 original size:46 final size:46
Alignment explanation
Indices: 91021557--91021738 Score: 240
Period size: 46 Copynumber: 4.0 Consensus size: 46
91021547 TTTGACATGA
* * ** * *
91021557 TGCCATAGTATCTTTCAACTATGGTCTTACTTATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*** *
91021603 TGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
91021649 TGACATGATATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
91021695 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
91021739 AGAGCACAAT
Statistics
Matches: 121, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
45 4 0.03
46 117 0.97
ACGTcount: A:0.23, C:0.22, G:0.14, T:0.41
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:91023879 original size:3 final size:3
Alignment explanation
Indices: 91023865--91023913 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
91023855 TTTTATACTA
*
91023865 AAT AATT AAT AAT AA- AAT AAT AAT GA- AAT AAT AAT AA- AAT AAT
1 AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
91023908 AA- AAT A
1 AAT AAT A
91023914 TCTCATTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
2 7 0.18
3 29 0.74
4 3 0.08
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:91023887 original size:11 final size:11
Alignment explanation
Indices: 91023871--91023909 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
91023861 ACTAAATAAT
91023871 TAATAATAAAA
1 TAATAATAAAA
*
91023882 TAATAATGAAA
1 TAATAATAAAA
91023893 TAATAATAAAA
1 TAATAATAAAA
91023904 TAATAA
1 TAATAA
91023910 AATATCTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (11 bp):
TAATAATAAAA
Found at i:91023896 original size:19 final size:19
Alignment explanation
Indices: 91023872--91023913 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
91023862 CTAAATAATT
*
91023872 AATAATAAAATAATAATGA
1 AATAATAAAATAATAATAA
91023891 AATAATAATAA-AATAATAA
1 AATAATAA-AATAATAATAA
91023910 AATA
1 AATA
91023914 TCTCATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (19 bp):
AATAATAAAATAATAATAA
Found at i:91023936 original size:20 final size:21
Alignment explanation
Indices: 91023883--91023947 Score: 66
Period size: 19 Copynumber: 3.3 Consensus size: 21
91023873 ATAATAAAAT
* *
91023883 AATAATGAAATA-ATAA-TAA
1 AATAATAAAATATCTAATTAA
*
91023902 AATAATAAAATATCTCATTAA
1 AATAATAAAATATCTAATTAA
*
91023923 AATAAT-ATATATCTAATT-A
1 AATAATAAAATATCTAATTAA
91023942 AATAAT
1 AATAAT
91023948 CATAAATTAT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
19 18 0.46
20 12 0.31
21 9 0.23
ACGTcount: A:0.60, C:0.05, G:0.02, T:0.34
Consensus pattern (21 bp):
AATAATAAAATATCTAATTAA
Found at i:91029054 original size:88 final size:87
Alignment explanation
Indices: 91028956--91029163 Score: 235
Period size: 88 Copynumber: 2.4 Consensus size: 87
91028946 TTAAGAGTGT
* * * *
91028956 AAAAAACCCTCAAACTTCTATAAAAAAATTAATTAAGTTCTTGCAT-T-TTTTTCACT-AAATTA
1 AAAAAACCCTCAAAC-T-TAAAAAAAAAGTAATTAAGTCCTTAC-TCTATTTTTCACTCAAATTA
* *
91029018 GGTAATTAAATTTTCAAATTGCATCA
63 GGTAATTAAACTTTCAAAATGCAT-A
* *
91029044 AAAAAACCCTCAAAACTTAAAAAAAAAGTAATTAAGTCCTTACTCTATTTTTTACTCAAATTGGG
1 AAAAAACCCTC-AAACTTAAAAAAAAAGTAATTAAGTCCTTACTCTATTTTTCACTCAAATTAGG
*
91029109 TACTTAAACTTTCAAAATGCATA
65 TAATTAAACTTTCAAAATGCATA
* *
91029132 AAAAAGACCCTCAAATTTAAAAAATAA-TAATT
1 AAAAA-ACCCTCAAACTTAAAAAAAAAGTAATT
91029164 TAAGCCCCTT
Statistics
Matches: 104, Mismatches: 11, Indels: 11
0.83 0.09 0.09
Matches are distributed among these distances:
86 1 0.01
87 28 0.27
88 39 0.38
89 36 0.35
ACGTcount: A:0.46, C:0.15, G:0.06, T:0.33
Consensus pattern (87 bp):
AAAAAACCCTCAAACTTAAAAAAAAAGTAATTAAGTCCTTACTCTATTTTTCACTCAAATTAGGT
AATTAAACTTTCAAAATGCATA
Found at i:91029780 original size:9 final size:9
Alignment explanation
Indices: 91029730--91029861 Score: 58
Period size: 9 Copynumber: 14.4 Consensus size: 9
91029720 TTTGGATGCA
91029730 TTTTATAAT
1 TTTTATAAT
*
91029739 TTTCTAATGAT
1 TTT-T-ATAAT
* *
91029750 TTTTACAAAA
1 TTTTA-TAAT
*
91029760 TTTTACAAT
1 TTTTATAAT
*
91029769 TTTTATATT
1 TTTTATAAT
*
91029778 TTTTCTAAT
1 TTTTATAAT
*
91029787 TTTTAATAAA
1 TTTT-ATAAT
*
91029797 TTTTAT-TT
1 TTTTATAAT
*
91029805 TTATTA-AAA
1 TT-TTATAAT
*
91029814 TTTAATAAT
1 TTTTATAAT
91029823 TTTTAT-AT
1 TTTTATAAT
*
91029831 ATTTTATTGAT
1 -TTTTA-TAAT
91029842 TTTTAT-A-
1 TTTTATAAT
*
91029849 GTTTATAAT
1 TTTTATAAT
91029858 TTTT
1 TTTT
91029862 TACTACATAT
Statistics
Matches: 90, Mismatches: 21, Indels: 24
0.67 0.16 0.18
Matches are distributed among these distances:
7 5 0.06
8 8 0.09
9 47 0.52
10 21 0.23
11 9 0.10
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (9 bp):
TTTTATAAT
Found at i:91029800 original size:19 final size:19
Alignment explanation
Indices: 91029748--91029801 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 19
91029738 TTTTCTAATG
91029748 ATTTTTACA-AAATTTTACA
1 ATTTTTA-ATAAATTTTACA
* *
91029767 ATTTTT-AT-ATTTTTTCTA
1 ATTTTTAATAAATTTTAC-A
91029785 ATTTTTAATAAATTTTA
1 ATTTTTAATAAATTTTA
91029802 TTTTTATTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 7
0.71 0.11 0.18
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 8 0.30
20 5 0.19
ACGTcount: A:0.35, C:0.06, G:0.00, T:0.59
Consensus pattern (19 bp):
ATTTTTAATAAATTTTACA
Found at i:91034878 original size:42 final size:42
Alignment explanation
Indices: 91034777--91034880 Score: 127
Period size: 42 Copynumber: 2.5 Consensus size: 42
91034767 GCGGCCAGGG
* *
91034777 CATGGGCGTGTGACCAGGCCGTGTGAGCCTCATGGGTAAGGA
1 CATGGGCGTCTGACCAGGCCGTGTGAGCCACATGGGTAAGGA
* ** * *
91034819 CAAGGATGTCTGCCCAGGCTGTGTGAGCCACATGGGTAAGGA
1 CATGGGCGTCTGACCAGGCCGTGTGAGCCACATGGGTAAGGA
* *
91034861 CATGGGCGTTTGGCCAGGCC
1 CATGGGCGTCTGACCAGGCC
91034881 ATGTAACTCA
Statistics
Matches: 49, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.19, C:0.23, G:0.38, T:0.19
Consensus pattern (42 bp):
CATGGGCGTCTGACCAGGCCGTGTGAGCCACATGGGTAAGGA
Found at i:91041492 original size:46 final size:47
Alignment explanation
Indices: 91041297--91041612 Score: 220
Period size: 46 Copynumber: 6.7 Consensus size: 47
91041287 AGGGGGTAAT
* * **
91041297 GCCGATGCCATGTCCCAGACATAGTCTTACACTGACTAT-CAAAATCGAG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTACATCA-CGAG
* * *
91041346 GCCGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAT-ATCCG-T
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTCT-ACATCA--CGAG
* * *
91041396 GCCGATGCCATGTCCCAGACAGGGTCTTACACT-G-AC-ACATCTCGTA-
1 GCCGATG-CATGTCCCAGACA-TGTCTTACACTGGCTCTACATCACG-AG
*
91041442 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACGTCACGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACATCACGAG
* * * ** * *
91041488 GCCGATGCATGTCCCAAACATGTCTCACACTAGCTCT-CATTTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACATCACGAG
* * * * * * *
91041534 GTCGATACCATGTCCTAGACATGGTCTTACACAGGCTCT-CATAATGTG
1 GCCGAT-GCATGTCCCAGACAT-GTCTTACACTGGCTCTACATCACGAG
91041582 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
91041613 AGCACACAAA
Statistics
Matches: 212, Mismatches: 41, Indels: 31
0.75 0.14 0.11
Matches are distributed among these distances:
44 10 0.05
45 17 0.08
46 67 0.32
47 26 0.12
48 22 0.10
49 35 0.17
50 31 0.15
51 4 0.02
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (47 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCTACATCACGAG
Found at i:91041591 original size:140 final size:142
Alignment explanation
Indices: 91041297--91041612 Score: 356
Period size: 140 Copynumber: 2.2 Consensus size: 142
91041287 AGGGGGTAAT
91041297 GCCGATGCCATGTCCCAGACATAGTCTTACACTGACTATCAAAATCGAGGCCGACGCCATGTCCC
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACTATCAAAATCGAGGCCGACGCCATGTCCC
* * ** *
91041362 AGACATGGTCTTACACTAGCTCTCACATATCCGTGCCGATGCCATGTCCCAGACAGGGTCTTACA
64 AAACATGGTCTCACACTAGCTCT-ACATATCAATGCCGATACCATGTCCCAGACAGGGTCTTACA
*
91041427 CTGACACATCTCGTA
128 CAGACACATCTCGTA
* *** *
91041442 GCCGATGCATGTCCCAGACATGTCTTACACTGGCT-TACGTCA-CGAGGCCGATG-CATGTCCCA
1 GCCGATGCATGTCCCAGACATGTCTTACACTGACTAT-CAAAATCGAGGCCGACGCCATGTCCCA
* * * *
91041504 AACAT-GTCTCACACTAGCTCT-CATTTCAATGTCGATACCATGTCCTAGACATGGTCTTACACA
65 AACATGGTCTCACACTAGCTCTACATATCAATGCCGATACCATGTCCCAGACAGGGTCTTACACA
* * * *
91041567 GGCTC-TCATAATGTG
130 GACACATC-T--CGTA
91041582 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
91041613 AGCACACAAA
Statistics
Matches: 148, Mismatches: 19, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
137 2 0.01
138 38 0.26
140 48 0.32
141 13 0.09
142 11 0.07
143 15 0.10
144 14 0.09
145 7 0.05
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (142 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACTATCAAAATCGAGGCCGACGCCATGTCCCAA
ACATGGTCTCACACTAGCTCTACATATCAATGCCGATACCATGTCCCAGACAGGGTCTTACACAG
ACACATCTCGTA
Found at i:91043425 original size:20 final size:21
Alignment explanation
Indices: 91043391--91043431 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
91043381 TGTTTAGTGG
91043391 AAAAATTTTCTAAGTT-TTGT
1 AAAAATTTTCTAAGTTCTTGT
91043411 AAAAA-TTTCTAAAGTTCTTGT
1 AAAAATTTTCT-AAGTTCTTGT
91043432 TTTAGTCCCA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.26
20 10 0.53
21 4 0.21
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.46
Consensus pattern (21 bp):
AAAAATTTTCTAAGTTCTTGT
Found at i:91055502 original size:10 final size:10
Alignment explanation
Indices: 91055482--91055520 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
91055472 ACATGCAAAT
91055482 TAAATAGAAAA
1 TAAA-AGAAAA
91055493 TAAAAGAAAA
1 TAAAAGAAAA
91055503 TAAAAGAAAGA
1 TAAAAGAAA-A
91055514 -AAAAGAA
1 TAAAAGAA
91055521 GGAAGAACGT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
10 22 0.81
11 5 0.19
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (10 bp):
TAAAAGAAAA
Found at i:91062823 original size:15 final size:15
Alignment explanation
Indices: 91062803--91062844 Score: 75
Period size: 15 Copynumber: 2.8 Consensus size: 15
91062793 TTCTTTTTCC
91062803 TAATATGTTATTGCT
1 TAATATGTTATTGCT
91062818 TAATATGTTATTGCT
1 TAATATGTTATTGCT
*
91062833 TAATATATTATT
1 TAATATGTTATT
91062845 ACAATATTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.31, C:0.05, G:0.10, T:0.55
Consensus pattern (15 bp):
TAATATGTTATTGCT
Found at i:91063046 original size:30 final size:30
Alignment explanation
Indices: 91062983--91063047 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 30
91062973 AAATATTGGA
* *
91062983 TCTTCTCAAGCTCCTGAACGCGATACCAAG
1 TCTTCCCAAGCTCCTGAACGAGATACCAAG
* * *
91063013 TCTTCCCAAGCTCCTGAATGAGATATCAGG
1 TCTTCCCAAGCTCCTGAACGAGATACCAAG
91063043 TCTTC
1 TCTTC
91063048 TCAATCCCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.28
Consensus pattern (30 bp):
TCTTCCCAAGCTCCTGAACGAGATACCAAG
Found at i:91066122 original size:2 final size:2
Alignment explanation
Indices: 91066115--91066145 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
91066105 TTTTGTGGTT
91066115 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
91066146 TTTATTAAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:91093231 original size:46 final size:46
Alignment explanation
Indices: 91093166--91093581 Score: 570
Period size: 46 Copynumber: 9.0 Consensus size: 46
91093156 TTATCTTTGA
* * * * * *
91093166 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATAT
91093212 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
* * *
91093258 CACGTTGCTATGGTATCTTTCAACCATGGTCTTATTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATAT
91093304 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
* * *
91093350 CACGTCGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTTCATAT
91093396 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
* * **
91093442 CACGTTGCCATGGCATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
**
91093488 CA-GATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATG-TTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
* * **
91093534 CAGGTTGCCATGGTATCTTTGAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
91093580 CA
1 CA
91093582 GAGAGCACAC
Statistics
Matches: 339, Mismatches: 24, Indels: 14
0.90 0.06 0.04
Matches are distributed among these distances:
45 13 0.04
46 317 0.94
47 9 0.03
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
Found at i:91093583 original size:92 final size:92
Alignment explanation
Indices: 91093171--91093574 Score: 641
Period size: 92 Copynumber: 4.4 Consensus size: 92
91093161 TTTGACATGA
* * *
91093171 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
91093236 CATGGTCTTATTCATTTCATATCACGT
66 CATGGTCTTATTCATTTCATATCACGT
* *
91093263 TGCTATGGTATCTTTCAACCATGGTCTTATTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
91093328 CATGGTCTTATTCATTTCATATCACGT
66 CATGGTCTTATTCATTTCATATCACGT
* *
91093355 CGCCATGGTATCTTTCAACCATGGTCTTATTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
91093420 CATGGTCTTATTCATTTCATATCACGT
66 CATGGTCTTATTCATTTCATATCACGT
* * *
91093447 TGCCATGGCATCTTTCAACCATGGTCTTACACA-TTTCATATCA-GATTGCCATGGTATCTTTCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTC-TGTCATG-TTGCCATGGTATCTTTCA
** *
91093510 ACCATGGTCTTACACATTTCATATCAGGT
64 ACCATGGTCTTATTCATTTCATATCACGT
* *
91093539 TGCCATGGTATCTTTGAACCATGGTCTTACACATTT
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCATTT
91093575 CATATCAGAG
Statistics
Matches: 292, Mismatches: 17, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
91 5 0.02
92 285 0.98
93 2 0.01
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.41
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTATTCATTTCATATCACGT
Found at i:91096070 original size:29 final size:30
Alignment explanation
Indices: 91096013--91096080 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
91096003 CACCCTTAAA
* * * *
91096013 ATATTTGCACTATTAGTCCTTTAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
91096043 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
91096072 AGTATTTAC
1 A-TATTTAC
91096081 TCTTGAGCCG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.28, C:0.18, G:0.06, T:0.49
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:91101755 original size:164 final size:164
Alignment explanation
Indices: 91101476--91101802 Score: 566
Period size: 164 Copynumber: 2.0 Consensus size: 164
91101466 ATCACCCATC
* * * *
91101476 AAAAGAAAAGACGTACCTAAATATGGAGTGGAGTCATGCAGTACCGACGCATCACAATAGACATG
1 AAAAAAAAAGACGTACCTAAATACGGAGTGGAGTCATGCAGTACAGACGCATCACAACAGACATG
* *
91101541 ATTGTTAGCACCCGAGTCTGGATACCACGATGCAGTACCAACAAACATGGGTATATACGAA-TCA
66 ATTGCTAGCACCCGAGTCTGGATACCACGATACAGTACCAACAAACATGGGTATATAC-AATTCA
91101605 GTGCCACCACCATTCGACCCGAATTGAGTGATATA
130 GTGCCACCACCATTCGACCCGAATTGAGTGATATA
91101640 AAAAAAAAAGACGTACCTAAATACGGAGTGGAGTCATGCAGTACAGACGCATCACAACAGACATG
1 AAAAAAAAAGACGTACCTAAATACGGAGTGGAGTCATGCAGTACAGACGCATCACAACAGACATG
* *
91101705 ATTGCTAGCACTCGAGTCTGGATACCACGATACAGTACCAACAGACATGGGTATATACAATTCAG
66 ATTGCTAGCACCCGAGTCTGGATACCACGATACAGTACCAACAAACATGGGTATATACAATTCAG
91101770 TGCCACCACCATTCGACCCGAATTGAGTGATAT
131 TGCCACCACCATTCGACCCGAATTGAGTGATAT
91101803 TAATATACAA
Statistics
Matches: 154, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
163 2 0.01
164 152 0.99
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.20
Consensus pattern (164 bp):
AAAAAAAAAGACGTACCTAAATACGGAGTGGAGTCATGCAGTACAGACGCATCACAACAGACATG
ATTGCTAGCACCCGAGTCTGGATACCACGATACAGTACCAACAAACATGGGTATATACAATTCAG
TGCCACCACCATTCGACCCGAATTGAGTGATATA
Found at i:91124137 original size:30 final size:30
Alignment explanation
Indices: 91124081--91124138 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
91124071 TAGGCACTTT
* *
91124081 CACACGGGTAATCCACATGCCTGTGTGTGA
1 CACACGGGTAATCCACACGCCCGTGTGTGA
*
91124111 CACACGGGTAGA-CTACACGCCCGTGTGT
1 CACACGGGTA-ATCCACACGCCCGTGTGT
91124139 CATGACCGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (30 bp):
CACACGGGTAATCCACACGCCCGTGTGTGA
Found at i:91126882 original size:9 final size:10
Alignment explanation
Indices: 91126861--91126889 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
91126851 ATTGTGTATT
91126861 TGAATAGAAA
1 TGAATAGAAA
91126871 TGAATA-AAA
1 TGAATAGAAA
91126880 TGAATAGAAA
1 TGAATAGAAA
91126890 AAAAGAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.62, C:0.00, G:0.17, T:0.21
Consensus pattern (10 bp):
TGAATAGAAA
Found at i:91127188 original size:26 final size:26
Alignment explanation
Indices: 91127140--91127215 Score: 100
Period size: 26 Copynumber: 2.9 Consensus size: 26
91127130 AAATATTTTC
*
91127140 TCAAAATTTTGC-AAGGAGCAAAATTG
1 TCAAAATTTTGCTAA-GAGTAAAATTG
*
91127166 TCAAAATTTTACTAAGAGTAAAATTG
1 TCAAAATTTTGCTAAGAGTAAAATTG
* *
91127192 TCAAAATTTTGCTAGGGGTAAAAT
1 TCAAAATTTTGCTAAGAGTAAAAT
91127216 AGGGATGAGA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 42 0.95
27 2 0.05
ACGTcount: A:0.42, C:0.09, G:0.17, T:0.32
Consensus pattern (26 bp):
TCAAAATTTTGCTAAGAGTAAAATTG
Found at i:91154111 original size:45 final size:45
Alignment explanation
Indices: 91154060--91154257 Score: 154
Period size: 45 Copynumber: 4.5 Consensus size: 45
91154050 CCTGTTCCCT
91154060 TGAAGTTGCAGTGAAGCAGATCAAAGACGACGAATCTTGGCTTCC
1 TGAAGTTGCAGTGAAGCAGATCAAAGACGACGAATCTTGGCTTCC
** * * * * *
91154105 TGAAGTTGCAGTGAAGCAGATTTAAG-CCACCAA-CCTAGCTCCC
1 TGAAGTTGCAGTGAAGCAGATCAAAGACGACGAATCTTGGCTTCC
* * * * * * **** *
91154148 TAAAGTTGTAGTGGAGTAGGCTAAAATTTTA-G-ATCTT-GTTTCCC
1 TGAAGTTGCAGTGAAGCA-GATCAAAGACGACGAATCTTGGCTT-CC
* * *
91154192 TGAAGTTGCAGTGAAGCAGATCGAAGACGATGAACCTTGGCTTCC
1 TGAAGTTGCAGTGAAGCAGATCAAAGACGACGAATCTTGGCTTCC
91154237 TGAAGTTGCAGTGAAGCAGAT
1 TGAAGTTGCAGTGAAGCAGAT
91154258 TTAAGCCACC
Statistics
Matches: 112, Mismatches: 34, Indels: 14
0.70 0.21 0.09
Matches are distributed among these distances:
43 29 0.26
44 28 0.25
45 52 0.46
46 3 0.03
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (45 bp):
TGAAGTTGCAGTGAAGCAGATCAAAGACGACGAATCTTGGCTTCC
Found at i:91154283 original size:132 final size:133
Alignment explanation
Indices: 91154045--91154433 Score: 579
Period size: 132 Copynumber: 2.9 Consensus size: 133
91154035 GTGAATCCTA
*
91154045 TAGATCCTG-TTCCCTTGAAGTTGCAGTGAAGCAGATCAAAGACGACGAATCTTGGCTTCCTGAA
1 TAGATCCTGTTTCCC-TGAAGTTGCAGTGAAGCAGATCAAAGACGATGAATCTTGGCTTCCTGAA
*
91154109 GTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAA
65 GTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAA
91154174 TTT-
130 TTTG
* * *
91154177 TAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGATGAACCTTGGCTTCCTGAAG
1 TAGATCCTGTTTCCCTGAAGTTGCAGTGAAGCAGATCAAAGACGATGAATCTTGGCTTCCTGAAG
* * *
91154242 TTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCTCTAAAGTTGTAGTAGAGTAGGCTAAATT
66 TTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAAT
91154307 TTG
131 TTG
* * * *
91154310 TAGATCCTGTCTCCCTGAAGTTGTAGT-AGAGCAGATCAAAAACGGTGAATC-TGGTCTTCCTGA
1 TAGATCCTGTTTCCCTGAAGTTGCAGTGA-AGCAGATCAAAGACGATGAATCTTGG-CTTCCTGA
* * * *
91154373 AGTCGCAGTGAAGCAGATTCAAACCACTATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGC
64 AGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGC
91154434 CGAAGATTGC
Statistics
Matches: 232, Mismatches: 21, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
132 122 0.53
133 110 0.47
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (133 bp):
TAGATCCTGTTTCCCTGAAGTTGCAGTGAAGCAGATCAAAGACGATGAATCTTGGCTTCCTGAAG
TTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCTAAAAT
TTG
Found at i:91154448 original size:133 final size:133
Alignment explanation
Indices: 91154045--91154456 Score: 546
Period size: 133 Copynumber: 3.1 Consensus size: 133
91154035 GTGAATCCTA
*
91154045 TAGATCCTGT-TCCCTTGAAGTTGCAGTGAAGCAGATCAAAGACGACGAATCTTGGCTTCCTGAA
1 TAGATCCTGTCTCCC-TGAAGTTGCAGTGAAGCAGATCAAAGACGATGAATCTTGGCTTCCTGAA
* *
91154109 GTTGCAGTGAAGCAGATTTAAGCCACCAACCTAGCTCCCTAAAGTTGTAGTGGAGTAGG-CTAAA
65 GTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCCAAAA
*
91154173 ATTT
130 ATTG
* * * *
91154177 TAGATCTTGTTTCCCTGAAGTTGCAGTGAAGCAGATCGAAGACGATGAACCTTGGCTTCCTGAAG
1 TAGATCCTGTCTCCCTGAAGTTGCAGTGAAGCAGATCAAAGACGATGAATCTTGGCTTCCTGAAG
* * * **
91154242 TTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCTCTAAAGTTGTAGTAGAGTAGGCTAAATT
66 TTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCCAAAAA
91154307 TTG
131 TTG
* * *
91154310 TAGATCCTGTCTCCCTGAAGTTGTAGT-AGAGCAGATCAAAAACGGTGAATC-TGGTCTTCCTGA
1 TAGATCCTGTCTCCCTGAAGTTGCAGTGA-AGCAGATCAAAGACGATGAATCTTGG-CTTCCTGA
* * * * *
91154373 AGTCGCAGTGAAGCAGATTCAAACCACTATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCCGAA
64 AGTTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCCAAA
*
91154438 GATTG
129 AATTG
*
91154443 CAGAT-CTCGTCTCC
1 TAGATCCT-GTCTCC
91154457 AGTGGAGCAG
Statistics
Matches: 245, Mismatches: 30, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
132 117 0.48
133 128 0.52
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (133 bp):
TAGATCCTGTCTCCCTGAAGTTGCAGTGAAGCAGATCAAAGACGATGAATCTTGGCTTCCTGAAG
TTGCAGTGAAGCAGATTTAAGCCACCATCCTAGCTCCCTAAAGTTGTAGTGGAGTAGGCCAAAAA
TTG
Found at i:91157691 original size:136 final size:135
Alignment explanation
Indices: 91157449--91157927 Score: 396
Period size: 131 Copynumber: 3.6 Consensus size: 135
91157439 GACGAGATTT
* * * ** *
91157449 GATATTTGGCAATTCGCGGAAT-AGTGTCCTAACATGTTGGGTTGCAATTTCGCGTTTGCTCAAA
1 GATATTTGGCAATTCGCGGAATCA-TGCCCTAACGTGCTGGGTTGCAATTTCTTGTTTGCTTAAA
* *
91157513 ATAATCGAATATCCCTTCAAAATTTCA-CACATTCCTTTTAAAAAAAAATTC-TTTAAAACGAAG
65 ATAATCGAATATCCCTTCAAAATTTCATCAC-GT-CTTCTAAAAAAAAA-TCATTTAAAACGAAG
** *
91157576 GTGATGTGC
127 GCAATATGC
*
91157585 GATATTTGGCAATTCGCGAAATCATGCCCTAACGTGCTGGGTTGCAATTTCTTGTTTGCTTAAAA
1 GATATTTGGCAATTCGCGGAATCATGCCCTAACGTGCTGGGTTGCAATTTCTTGTTTGCTTAAAA
*
91157650 TAATCAAATATCCCTTCAAAATTTCATTCACGTCTTCT----AAAAATCATTTAAAACGAAGGCA
66 TAATCGAATATCCCTTCAAAATTTCA-TCACGTCTTCTAAAAAAAAATCATTTAAAACGAAGGCA
*
91157711 ATATTC
130 ATATGC
**** * * *
91157717 GGCGCTTGACAATTCG-GGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTTGTTTG-TTCAAA
1 GATATTTGGCAATTCGCGGAATCATGCCCTAACGTGCTGGGTTGCAATTTCTTGTTTGCTT-AAA
* * ** * * *
91157780 ACAATCGAATATTCCTTTGAAATTTCACTCATGTCTTCT----AAAAATCCTTTAAAATGAAGGC
65 ATAATCGAATATCCCTTCAAAATTTCA-TCACGTCTTCTAAAAAAAAATCATTTAAAACGAAGGC
91157841 AATACT-C
129 AATA-TGC
* * * * * * ** ** *
91157848 GGTGTTTGACAATTCG-GGAGTCATGCCCTATCGTGATAAGTTGTGATTTCTCGTTTG-TTCAAA
1 GATATTTGGCAATTCGCGGAATCATGCCCTAACGTGCTGGGTTGCAATTTCTTGTTTGCTT-AAA
* *
91157911 ACAATCGAATATTCCTT
65 ATAATCGAATATCCCTT
91157928 TAGGTTTTCG
Statistics
Matches: 296, Mismatches: 41, Indels: 17
0.84 0.12 0.05
Matches are distributed among these distances:
130 2 0.01
131 170 0.57
132 34 0.11
136 85 0.29
137 2 0.01
138 3 0.01
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (135 bp):
GATATTTGGCAATTCGCGGAATCATGCCCTAACGTGCTGGGTTGCAATTTCTTGTTTGCTTAAAA
TAATCGAATATCCCTTCAAAATTTCATCACGTCTTCTAAAAAAAAATCATTTAAAACGAAGGCAA
TATGC
Found at i:91157791 original size:131 final size:131
Alignment explanation
Indices: 91157594--91157927 Score: 445
Period size: 131 Copynumber: 2.5 Consensus size: 131
91157584 CGATATTTGG
* * * *
91157594 CAATTCGCGAAATCATGCCCTAACGTGCTGGGTTGCAATTTCTTGTTTGCTT-AAAATAATCAAA
1 CAATTCG-GGAATCATGCCCTATCGTGCTGGGTTGCAATTTCTTGTTTG-TTCAAAACAATCGAA
* * *
91157658 TATCCCTTCAAAATTTCATTCACGTCTTCTAAAAATCATTTAAAACGAAGGCAATATTCGGCGCT
64 TATTCCTTCAAAATTTCACTCACGTCTTCTAAAAATCATTTAAAACGAAGGCAATACTCGGCGCT
91157723 TGA
129 TGA
*
91157726 CAATTCGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTTGTTTGTTCAAAACAATCGAATA
1 CAATTCGGGAATCATGCCCTATCGTGCTGGGTTGCAATTTCTTGTTTGTTCAAAACAATCGAATA
** * * * * *
91157791 TTCCTTTGAAATTTCACTCATGTCTTCTAAAAATCCTTTAAAATGAAGGCAATACTCGGTGTTTG
66 TTCCTTCAAAATTTCACTCACGTCTTCTAAAAATCATTTAAAACGAAGGCAATACTCGGCGCTTG
91157856 A
131 A
* * ** ** *
91157857 CAATTCGGGAGTCATGCCCTATCGTGATAAGTTGTGATTTCTCGTTTGTTCAAAACAATCGAATA
1 CAATTCGGGAATCATGCCCTATCGTGCTGGGTTGCAATTTCTTGTTTGTTCAAAACAATCGAATA
91157922 TTCCTT
66 TTCCTT
91157928 TAGGTTTTCG
Statistics
Matches: 178, Mismatches: 23, Indels: 3
0.87 0.11 0.01
Matches are distributed among these distances:
130 2 0.01
131 169 0.95
132 7 0.04
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (131 bp):
CAATTCGGGAATCATGCCCTATCGTGCTGGGTTGCAATTTCTTGTTTGTTCAAAACAATCGAATA
TTCCTTCAAAATTTCACTCACGTCTTCTAAAAATCATTTAAAACGAAGGCAATACTCGGCGCTTG
A
Found at i:91157985 original size:131 final size:131
Alignment explanation
Indices: 91157589--91158013 Score: 417
Period size: 131 Copynumber: 3.2 Consensus size: 131
91157579 ATGTGCGATA
* * * * * ** * *
91157589 TTTGGCAATTCGCGAAATCATGCCCTAACGTGCTGGGTTGCAATTTCTTGTTTGCTT-AAAATAA
1 TTTGACAATTCG-GGAATCGTGCCCTATCGTGATAAGTTGCAATTTCTCGTTTG-TTCAAAACAA
* * ** * * * * *
91157653 TCAAATATCCCTTCAAAATTTCATTCACGTCTTCTAAAAATCATTTAAAACGAAGGCAATATTCG
64 TCGAATATTCCTTTGAAATTTCACTCATGTCTTCTAAAAATCCTTCAAAATGAAGGCAATATTCG
*
91157718 GCG
129 GTG
* * ** *
91157721 CTTGACAATTCGGGAATCGTGCCCTATCGTGCTGGGTTGCAATTTCTTGTTTGTTCAAAACAATC
1 TTTGACAATTCGGGAATCGTGCCCTATCGTGATAAGTTGCAATTTCTCGTTTGTTCAAAACAATC
* *
91157786 GAATATTCCTTTGAAATTTCACTCATGTCTTCTAAAAATCCTTTAAAATGAAGGCAATACTCGGT
66 GAATATTCCTTTGAAATTTCACTCATGTCTTCTAAAAATCCTTCAAAATGAAGGCAATATTCGGT
91157851 G
131 G
* * **
91157852 TTTGACAATTCGGGAGTCATGCCCTATCGTGATAAGTTGTGATTTCTCGTTTGTTCAAAACAATC
1 TTTGACAATTCGGGAATCGTGCCCTATCGTGATAAGTTGCAATTTCTCGTTTGTTCAAAACAATC
** * * *
91157917 GAATATTCCTTT-AGGTTTTCGCTCATGT-TTATTAAAAA-CCTCTCAAAATGAAGGCAATGTTC
66 GAATATTCCTTTGA-AATTTCACTCATGTCTT-CTAAAAATCCT-TCAAAATGAAGGCAATATTC
*
91157979 GATG
128 GGTG
* * * *
91157983 TTTGGCTATTTGAGAATCGTGCCCTATCGTG
1 TTTGACAATTCGGGAATCGTGCCCTATCGTG
91158014 CTGGGTTGCG
Statistics
Matches: 250, Mismatches: 39, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
130 8 0.03
131 232 0.93
132 10 0.04
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (131 bp):
TTTGACAATTCGGGAATCGTGCCCTATCGTGATAAGTTGCAATTTCTCGTTTGTTCAAAACAATC
GAATATTCCTTTGAAATTTCACTCATGTCTTCTAAAAATCCTTCAAAATGAAGGCAATATTCGGT
G
Found at i:91160910 original size:28 final size:28
Alignment explanation
Indices: 91160863--91160922 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 28
91160853 ACAAGAAAAT
91160863 AAAAATAATGTACTACTAAT-ATAATAAG
1 AAAAATAATGTACTACTAATAATAAT-AG
*
91160891 AAAAATAATGTATTTA-TAATAATAATAG
1 AAAAATAATGTA-CTACTAATAATAATAG
91160919 AAAA
1 AAAA
91160923 TAACGATATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 22 0.76
29 7 0.24
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (28 bp):
AAAAATAATGTACTACTAATAATAATAG
Found at i:91160934 original size:26 final size:27
Alignment explanation
Indices: 91160860--91160961 Score: 68
Period size: 26 Copynumber: 3.8 Consensus size: 27
91160850 TTTACAAGAA
* *
91160860 AATAAAAATAATGTACTACTA-ATATAAT
1 AATAAAAATAACGTA-TA-TATACATAAT
* * *
91160888 AAGAAAAATAATGTATTTATA-ATAAT
1 AATAAAAATAACGTATATATACATAAT
91160914 AATAGAAAATAACG-ATATATACATAA-
1 AATA-AAAATAACGTATATATACATAAT
* * *
91160940 AATATATATATACATATATATA
1 AATAAAAATA-ACGTATATATA
91160962 TGTATATACA
Statistics
Matches: 61, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
25 4 0.07
26 22 0.36
27 21 0.34
28 14 0.23
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (27 bp):
AATAAAAATAACGTATATATACATAAT
Found at i:91161167 original size:20 final size:18
Alignment explanation
Indices: 91161143--91161182 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
91161133 AATATAATGA
*
91161143 TATATATAAAACGTATAT
1 TATATATAAAAAGTATAT
91161161 TATATATAAAAAGTATAT
1 TATATATAAAAAGTATAT
91161179 TATA
1 TATA
91161183 CACATATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.40
Consensus pattern (18 bp):
TATATATAAAAAGTATAT
Found at i:91161312 original size:17 final size:16
Alignment explanation
Indices: 91161280--91161320 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
91161270 TTAAAAATAT
91161280 ATATAATATATAAAAA
1 ATATAATATATAAAAA
* *
91161296 ATATAATATTTTAAAA
1 ATATAATATATAAAAA
91161312 A-ATAATATA
1 ATATAATATA
91161321 CATAATATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 7 0.32
16 15 0.68
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
ATATAATATATAAAAA
Found at i:91161477 original size:18 final size:18
Alignment explanation
Indices: 91161454--91161493 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
91161444 GTATATACGT
91161454 ATAATAAT-GATAAAAATA
1 ATAATAATAG-TAAAAATA
*
91161472 ATAATAATAGTGAAAATA
1 ATAATAATAGTAAAAATA
91161490 ATAA
1 ATAA
91161494 ATATAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 19 0.95
19 1 0.05
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (18 bp):
ATAATAATAGTAAAAATA
Found at i:91161501 original size:12 final size:12
Alignment explanation
Indices: 91161457--91161600 Score: 52
Period size: 12 Copynumber: 11.8 Consensus size: 12
91161447 TATACGTATA
* *
91161457 ATAATGATAAAA
1 ATAATAATAAAT
91161469 ATAATAATAATAGT
1 ATAATAATAA-A-T
*
91161483 GAAAATAATAAAT
1 -ATAATAATAAAT
91161496 ATAATAATAGAA-
1 ATAATAATA-AAT
** *
91161508 ACGATAAT-ACT
1 ATAATAATAAAT
91161519 AT-ATAA-AAAGT
1 ATAATAATAAA-T
* *
91161530 AT-ATATGTACAT
1 ATAATA-ATAAAT
91161542 AT-ATAATAAA-
1 ATAATAATAAAT
*
91161552 ATATATACT-AAT
1 ATA-ATAATAAAT
91161564 ATTAATAATAAAT
1 A-TAATAATAAAT
*
91161577 ATAATATTATAAT
1 ATAATAATA-AAT
91161590 ACTAATAATAA
1 A-TAATAATAA
91161601 CAATATGAAA
Statistics
Matches: 99, Mismatches: 17, Indels: 31
0.67 0.12 0.21
Matches are distributed among these distances:
10 8 0.08
11 12 0.12
12 45 0.45
13 17 0.17
14 8 0.08
15 9 0.09
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (12 bp):
ATAATAATAAAT
Found at i:91161514 original size:24 final size:25
Alignment explanation
Indices: 91161462--91161516 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
91161452 GTATAATAAT
91161462 GATAA-AAATAATAATAATAGTGAAA
1 GATAATAAATAATAATAATAG-GAAA
91161487 -ATAATAAAT-ATAATAATA-GAAA
1 GATAATAAATAATAATAATAGGAAA
91161509 CGATAATA
1 -GATAATA
91161517 CTATATAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
22 4 0.15
24 19 0.70
25 4 0.15
ACGTcount: A:0.64, C:0.02, G:0.09, T:0.25
Consensus pattern (25 bp):
GATAATAAATAATAATAATAGGAAA
Found at i:91161583 original size:26 final size:24
Alignment explanation
Indices: 91161511--91161606 Score: 74
Period size: 26 Copynumber: 3.9 Consensus size: 24
91161501 AATAGAAACG
*
91161511 ATAATACTATATAA-AAAGTATA-T
1 ATAATACTA-ATAATAAAATATATT
*
91161534 AT-GTACATATATAATAAAATATA-T
1 ATAATAC-TA-ATAATAAAATATATT
*
91161558 ACTAATATTAATAATAAATATAATATT
1 A-TAATACTAATAATAAA-AT-ATATT
91161585 ATAATACTAATAATAACAATAT
1 ATAATACTAATAATAA-AATAT
91161607 GAAATTAAAG
Statistics
Matches: 60, Mismatches: 5, Indels: 14
0.76 0.06 0.18
Matches are distributed among these distances:
22 3 0.05
23 9 0.15
24 17 0.28
25 7 0.12
26 21 0.35
27 3 0.05
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.36
Consensus pattern (24 bp):
ATAATACTAATAATAAAATATATT
Found at i:91161712 original size:9 final size:9
Alignment explanation
Indices: 91161694--91161750 Score: 60
Period size: 9 Copynumber: 5.9 Consensus size: 9
91161684 TATAAAAAAA
91161694 ATTAATAAT
1 ATTAATAAT
*
91161703 ATTGATAAT
1 ATTAATAAT
91161712 ATTAATAAT
1 ATTAATAAT
91161721 ATTAGAAATAAT
1 ATT---AATAAT
*
91161733 ACTAATAAT
1 ATTAATAAT
91161742 ATTTAATAA
1 A-TTAATAA
91161751 AGAAATAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
9 26 0.65
10 6 0.15
12 8 0.20
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.40
Consensus pattern (9 bp):
ATTAATAAT
Found at i:91161715 original size:18 final size:20
Alignment explanation
Indices: 91161694--91161744 Score: 70
Period size: 21 Copynumber: 2.6 Consensus size: 20
91161684 TATAAAAAAA
91161694 ATTAATAATATT-G-ATAAT
1 ATTAATAATATTAGAATAAT
91161712 ATTAATAATATTAGAAATAAT
1 ATTAATAATATTAG-AATAAT
*
91161733 ACTAATAATATT
1 ATTAATAATATT
91161745 TAATAAAGAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 12 0.41
19 1 0.03
21 16 0.55
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.41
Consensus pattern (20 bp):
ATTAATAATATTAGAATAAT
Found at i:91163369 original size:29 final size:29
Alignment explanation
Indices: 91163321--91163378 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
91163311 CAATCTTTAT
* *
91163321 CCTCAGCGTGTGACCCGAAGCTCAACTCA
1 CCTCAGCGTATAACCCGAAGCTCAACTCA
*
91163350 CCTCAGCGTATAACCTGAAGCTCAACTCA
1 CCTCAGCGTATAACCCGAAGCTCAACTCA
91163379 TCTCTCGCAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.28, C:0.36, G:0.17, T:0.19
Consensus pattern (29 bp):
CCTCAGCGTATAACCCGAAGCTCAACTCA
Found at i:91163515 original size:76 final size:76
Alignment explanation
Indices: 91163418--91163704 Score: 299
Period size: 76 Copynumber: 3.8 Consensus size: 76
91163408 ACATAAATTG
* * * *
91163418 AAAAACAGAAATTGAGAATACCTCAACGTGTGACCTGAGGCTCAACTCGCCTCTTGCAATACGAA
1 AAAAACAGGAATTGAAAATACCTCAACGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAG
91163483 TTGACTTTTTA
66 TTGACTTTTTA
* * * * *
91163494 AAAAATAGGAATTGAAAATACCTTAGCGTGTGACCTGAGGCTCAA-TTGACCTCTCGCAATATGA
1 AAAAACAGGAATTGAAAATACCTCAACGTGTGACCTGAGGCTCAACTCG-CCTCTCGCAATACGA
* *
91163558 GTTGATTTTTTT
65 GTTGACTTTTTA
** * * * * * *
91163570 TGAAATAGTAATTGAAAATAACTCAGCGCGTGAGCTGAGGCTCAACTCGCCTCTCGCAATACGAG
1 AAAAACAGGAATTGAAAATACCTCAACGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAG
*
91163635 TTGACTTTTAAA
66 TTGACTTTT-TA
* * * * * *
91163647 AAAAACAAGAATTAAAAATACCTCCACATGTGAGCC-GAGACTCAACTCACCTCTCGCA
1 AAAAACAGGAATTGAAAATACCTCAACGTGTGA-CCTGAGGCTCAACTCGCCTCTCGCA
91163705 GTATGAGCTG
Statistics
Matches: 170, Mismatches: 37, Indels: 7
0.79 0.17 0.03
Matches are distributed among these distances:
75 2 0.01
76 123 0.72
77 44 0.26
78 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.26
Consensus pattern (76 bp):
AAAAACAGGAATTGAAAATACCTCAACGTGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAG
TTGACTTTTTA
Found at i:91163717 original size:153 final size:152
Alignment explanation
Indices: 91163427--91163721 Score: 387
Period size: 153 Copynumber: 1.9 Consensus size: 152
91163417 GAAAAACAGA
* * * *
91163427 AATTGAGAATACCTCAACGTGTGACCTGAGGCTCAACTCGCCTCTTGCAATACGAATTGACTTTT
1 AATTGAAAATAACTCAACGCGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAATTGACTTTT
* * * * * * * * *
91163492 TAAAAAATAGGAATTGAAAATACCTTAGCGTGTGACCTGAGGCTCAATTGACCTCTCGCAATATG
66 AAAAAAACAAGAATTAAAAATACCTCAGCATGTGACCTGAGACTCAACTCACCTCTCGCAATATG
*
91163557 AGTTGATTTTTTTTGAAATAGT
131 AGCTGATTTTTTTTGAAATAGT
* * *
91163579 AATTGAAAATAACTCAGCGCGTGAGCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGACTTTT
1 AATTGAAAATAACTCAACGCGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAATTGACTTTT
*
91163644 AAAAAAAACAAGAATTAAAAATACCTCCA-CATGTGAGCC-GAGACTCAACTCACCTCTCGCAGT
66 -AAAAAAACAAGAATTAAAAATACCT-CAGCATGTGA-CCTGAGACTCAACTCACCTCTCGCAAT
91163707 ATGAGCTGATTTTTT
128 ATGAGCTGATTTTTT
91163722 GAAACATAAA
Statistics
Matches: 122, Mismatches: 18, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
152 58 0.48
153 61 0.50
154 3 0.02
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.28
Consensus pattern (152 bp):
AATTGAAAATAACTCAACGCGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAATTGACTTTT
AAAAAAACAAGAATTAAAAATACCTCAGCATGTGACCTGAGACTCAACTCACCTCTCGCAATATG
AGCTGATTTTTTTTGAAATAGT
Found at i:91163720 original size:152 final size:151
Alignment explanation
Indices: 91163427--91163725 Score: 379
Period size: 152 Copynumber: 2.0 Consensus size: 151
91163417 GAAAAACAGA
* * * *
91163427 AATTGAGAATACCTCAACGTGTGACCTGAGGCTCAACTCGCCTCTTGCAATACGAATTGACTTTT
1 AATTGAAAATAACTCAACGCGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAATTGACTTTT
* * * * * * * * *
91163492 TAAAAAATAGGAATTGAAAATACCTTAGCGTGTGACCTGAGGCTCAATTGACCTCTCGCAATATG
66 AAAAAAACAAGAATTAAAAATACCTCAGCATGTGACCTGAGACTCAACTCACCTCTCGCAATATG
*
91163557 AGTTGATTTTTTTTGAAATAGT
131 AGCTGA-TTTTTTTGAAATAGT
* * *
91163579 AATTGAAAATAACTCAGCGCGTGAGCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGACTTTT
1 AATTGAAAATAACTCAACGCGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAATTGACTTTT
*
91163644 AAAAAAAACAAGAATTAAAAATACCTCCA-CATGTGAGCC-GAGACTCAACTCACCTCTCGCAGT
66 -AAAAAAACAAGAATTAAAAATACCT-CAGCATGTGA-CCTGAGACTCAACTCACCTCTCGCAAT
91163707 ATGAGCTGA-TTTTTTGAAA
128 ATGAGCTGATTTTTTTGAAA
91163726 CATAAATTGA
Statistics
Matches: 126, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
151 10 0.08
152 58 0.46
153 55 0.44
154 3 0.02
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (151 bp):
AATTGAAAATAACTCAACGCGTGACCTGAGGCTCAACTCGCCTCTCGCAATACGAATTGACTTTT
AAAAAAACAAGAATTAAAAATACCTCAGCATGTGACCTGAGACTCAACTCACCTCTCGCAATATG
AGCTGATTTTTTTGAAATAGT
Found at i:91163853 original size:89 final size:89
Alignment explanation
Indices: 91163656--91164065 Score: 489
Period size: 89 Copynumber: 4.7 Consensus size: 89
91163646 AAAAAACAAG
* * * * *
91163656 AATTAAAAATACCTCCACATGTGAGCCGAGACTCAACTCACCTCTCGCAGTATGAGCTGA-TTTT
1 AATTGAAAATACCTCGACATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
91163720 TTGAAACATAAATTGAAGAACAGA
66 TTGAAACATAAATTGAAGAACAGA
* * *
91163744 AATTGAAAATACCTCAACATGTGAGCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGATTTTT
1 AATTGAAAATACCTCGACATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
91163809 TTGAAACATAAATTGAAGAACATA
66 TTGAAACATAAATTGAAGAACAGA
* * * * *
91163833 AGTTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCACTTCTCGCAATATGAGTTTATTTTT
1 AATTGAAAATACCTCGACATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
*
91163898 TTGAAACATAAATTGAAAAACAGA
66 TTGAAACATAAATTGAAGAACAGA
* ** * *
91163922 AATTGAAAATATCTCGGTATGTG-GCCCGAGGGTCAACTCACCTCTCTCAATATGAGTTGATTTT
1 AATTGAAAATACCTCGACATGTGAG-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
*** *
91163986 TGAAAAACAGAAATT-AAG---A-A
65 TTTGAAACATAAATTGAAGAACAGA
* * *
91164006 TATTGAAAATACCTC-A-ACGTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 AATTGAAAATACCTCGACATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
91164066 AAAACATTAG
Statistics
Matches: 281, Mismatches: 38, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
81 2 0.01
82 37 0.13
84 14 0.05
85 1 0.00
88 57 0.20
89 170 0.60
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.28
Consensus pattern (89 bp):
AATTGAAAATACCTCGACATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
TTGAAACATAAATTGAAGAACAGA
Found at i:91163924 original size:14 final size:14
Alignment explanation
Indices: 91163901--91163930 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
91163891 TATTTTTTTG
*
91163901 AAACATAAATTGAA
1 AAACAGAAATTGAA
91163915 AAACAGAAATTGAA
1 AAACAGAAATTGAA
91163929 AA
1 AA
91163931 TATCTCGGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.67, C:0.07, G:0.10, T:0.17
Consensus pattern (14 bp):
AAACAGAAATTGAA
Found at i:91163960 original size:178 final size:171
Alignment explanation
Indices: 91163579--91164065 Score: 517
Period size: 178 Copynumber: 2.8 Consensus size: 171
91163569 TTGAAATAGT
* * ** * * * * * *
91163579 AATTGAAAATAACTCAGCGCGTGAGCTGAGGCTCAACTCGCCTCTCGCAATACGAGTTGACTTTT
1 AATTGAAAATACCTCAACATGTGAGCCGAGGCTCAACTCACCTCTCTCAATATGAGCTGATTTTT
* * * * *
91163644 --AAAA-A-AAA-CAAG-A-ATTAAAAATACCTCCACATGTGAGCCGAGACTCAACTCACCTCTC
66 GAAAAACAGAAATTAAGAATATTGAAAATACCTCAACATGT-ACCCGAGGCTCAACTCACCTCTC
* * *
91163702 GCAGTATGAGCTGATTTTTTGAAACATAAATTGAAGAACAGA
130 GCAATATGAGTTGATTTTTTGAAACATAAATTGAAAAACAGA
91163744 AATTGAAAATACCTCAACATGTGAGCCGAGGCTCAACTCACCTCT-TGCAATATGAGCTGATTTT
1 AATTGAAAATACCTCAACATGTGAGCCGAGGCTCAACTCACCTCTCT-CAATATGAGCTGATTTT
*** * *
91163808 TTTGAAACATAAATTGAAGAACATAAGTTGAAAATACCTCGACATGTAACCCGAGGCTCAACTCA
65 TGAAAAACAGAAATT-AAG-A-AT-A-TTGAAAATACCTCAACATGT-ACCCGAGGCTCAACTCA
* *
91163873 CTTCTCGCAATATGAGTTTATTTTTTTGAAACATAAATTGAAAAACAGA
124 CCTCTCGCAATATGAGTTGA-TTTTTTGAAACATAAATTGAAAAACAGA
* *** * *
91163922 AATTGAAAATATCTCGGTATGTG-GCCCGAGGGTCAACTCACCTCTCTCAATATGAGTTGATTTT
1 AATTGAAAATACCTCAACATGTGAG-CCGAGGCTCAACTCACCTCTCTCAATATGAGCTGATTTT
* *
91163986 TGAAAAACAGAAATTAAGAATATTGAAAATACCTCAACGTGT-CCTGAGGCTCAACTCACCTCTC
65 TGAAAAACAGAAATTAAGAATATTGAAAATACCTCAACATGTACCCGAGGCTCAACTCACCTCTC
91164050 GCAATATGAGTTGATT
130 GCAATATGAGTTGATT
91164066 AAAACATTAG
Statistics
Matches: 269, Mismatches: 37, Indels: 27
0.81 0.11 0.08
Matches are distributed among these distances:
165 54 0.20
167 3 0.01
168 1 0.00
169 3 0.01
170 2 0.01
171 36 0.13
173 18 0.07
174 2 0.01
175 2 0.01
176 2 0.01
177 53 0.20
178 92 0.34
179 1 0.00
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (171 bp):
AATTGAAAATACCTCAACATGTGAGCCGAGGCTCAACTCACCTCTCTCAATATGAGCTGATTTTT
GAAAAACAGAAATTAAGAATATTGAAAATACCTCAACATGTACCCGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTTGAAACATAAATTGAAAAACAGA
Found at i:91175975 original size:28 final size:28
Alignment explanation
Indices: 91175928--91175987 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 28
91175918 ACAAGAAAAT
91175928 AAAAATAATGTACTACTAAT-ATAATAAG
1 AAAAATAATGTACTACTAATAATAAT-AG
*
91175956 AAAAATAATGTATTTA-TAATAATAATAG
1 AAAAATAATGTA-CTACTAATAATAATAG
91175984 AAAA
1 AAAA
91175988 TAACGATATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 22 0.76
29 7 0.24
ACGTcount: A:0.60, C:0.03, G:0.07, T:0.30
Consensus pattern (28 bp):
AAAAATAATGTACTACTAATAATAATAG
Found at i:91175999 original size:26 final size:27
Alignment explanation
Indices: 91175925--91176008 Score: 68
Period size: 26 Copynumber: 3.1 Consensus size: 27
91175915 TTTACAAGAA
* *
91175925 AATAAAAATAATGTACTACTA-ATATAAT
1 AATAAAAATAACGTA-TA-TATACATAAT
* * *
91175953 AAGAAAAATAATGTATTTATA-ATAAT
1 AATAAAAATAACGTATATATACATAAT
91175979 AATAGAAAATAACG-ATATATACATAA-
1 AATA-AAAATAACGTATATATACATAAT
91176005 AATA
1 AATA
91176009 TATATATGTA
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
26 20 0.42
27 14 0.29
28 14 0.29
ACGTcount: A:0.60, C:0.05, G:0.06, T:0.30
Consensus pattern (27 bp):
AATAAAAATAACGTATATATACATAAT
Found at i:91176236 original size:18 final size:18
Alignment explanation
Indices: 91176197--91176237 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
91176187 ATATAATGAT
*
91176197 ATATATAAAAATAATATT
1 ATATATAAAAATAATATC
91176215 ATATATAAAAAGT-ATATC
1 ATATATAAAAA-TAATATC
91176233 ATATA
1 ATATA
91176238 CACGTATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 20 0.95
19 1 0.05
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (18 bp):
ATATATAAAAATAATATC
Found at i:91176531 original size:18 final size:18
Alignment explanation
Indices: 91176508--91176547 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
91176498 GTATATACGT
91176508 ATAATAAT-GATAAAAATA
1 ATAATAATAG-TAAAAATA
*
91176526 ATAATAATAGTGAAAATA
1 ATAATAATAGTAAAAATA
91176544 ATAA
1 ATAA
91176548 ATATAATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 19 0.95
19 1 0.05
ACGTcount: A:0.65, C:0.00, G:0.07, T:0.28
Consensus pattern (18 bp):
ATAATAATAGTAAAAATA
Found at i:91176555 original size:12 final size:12
Alignment explanation
Indices: 91176511--91176651 Score: 57
Period size: 12 Copynumber: 11.8 Consensus size: 12
91176501 TATACGTATA
* *
91176511 ATAATGATAAAA
1 ATAATAATAAAT
91176523 ATAATAATAATAGT
1 ATAATAATAA-A-T
*
91176537 GAAAATAATAAAT
1 -ATAATAATAAAT
91176550 ATAATAATAGAA-
1 ATAATAATA-AAT
** *
91176562 ACGATAAT-ACT
1 ATAATAATAAAT
91176573 AT-ATAA-AAAGT
1 ATAATAATAAA-T
* *
91176584 AT-ATATGTACAT
1 ATAATA-ATAAAT
91176596 AT-ATAATAAAT
1 ATAATAATAAAT
*
91176607 ATACTAAT--AT
1 ATAATAATAAAT
91176617 -TAATAATAAAT
1 ATAATAATAAAT
*
91176628 ATAATATTATAAT
1 ATAATAATA-AAT
91176641 ACTAATAATAA
1 A-TAATAATAA
91176652 CAATATGAAA
Statistics
Matches: 97, Mismatches: 17, Indels: 29
0.68 0.12 0.20
Matches are distributed among these distances:
9 6 0.06
10 8 0.08
11 15 0.15
12 40 0.41
13 11 0.11
14 8 0.08
15 9 0.09
ACGTcount: A:0.59, C:0.04, G:0.05, T:0.33
Consensus pattern (12 bp):
ATAATAATAAAT
Found at i:91176568 original size:24 final size:25
Alignment explanation
Indices: 91176516--91176570 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
91176506 GTATAATAAT
91176516 GATAA-AAATAATAATAATAGTGAAA
1 GATAATAAATAATAATAATAG-GAAA
91176541 -ATAATAAAT-ATAATAATA-GAAA
1 GATAATAAATAATAATAATAGGAAA
91176563 CGATAATA
1 -GATAATA
91176571 CTATATAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
22 4 0.15
24 19 0.70
25 4 0.15
ACGTcount: A:0.64, C:0.02, G:0.09, T:0.25
Consensus pattern (25 bp):
GATAATAAATAATAATAATAGGAAA
Found at i:91176630 original size:32 final size:32
Alignment explanation
Indices: 91176594--91176656 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 32
91176584 ATATATGTAC
* *
91176594 ATAT-ATAATAAATATACTAATATTAATAATAA
1 ATATAATAATAAA-ATACTAATAATAACAATAA
* *
91176626 ATATAATATTATAATACTAATAATAACAATA
1 ATATAATAATAAAATACTAATAATAACAATA
91176657 TGAAATTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
32 20 0.77
33 6 0.23
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (32 bp):
ATATAATAATAAAATACTAATAATAACAATAA
Found at i:91176759 original size:9 final size:9
Alignment explanation
Indices: 91176745--91176795 Score: 57
Period size: 9 Copynumber: 5.2 Consensus size: 9
91176735 TATAAAAAAA
91176745 AATATTAAT
1 AATATTAAT
91176754 AATATTAAT
1 AATATTAAT
91176763 AATATTAGAAAT
1 AATATT---AAT
*
91176775 AATACTAAT
1 AATATTAAT
91176784 AATATTTAAT
1 AATA-TTAAT
91176794 AA
1 AA
91176796 AGAAACAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
9 22 0.61
10 6 0.17
12 8 0.22
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (9 bp):
AATATTAAT
Found at i:91178854 original size:92 final size:89
Alignment explanation
Indices: 91178699--91178970 Score: 301
Period size: 92 Copynumber: 3.1 Consensus size: 89
91178689 TTAAGGGTAT
* * *
91178699 AAAAAGTCCTCCAACTTTTTC--TAAAAAAGTAATTAAGCCCCTACTCTTTTTTTTTCACTCAAT
1 AAAAAGGCCTCAAACTTTTTCAAAAAAAAAG-AATTAAG-CCCTACTC-TTTTTTTTCACTCAAT
*
91178762 TGGGTAATTGAATTTTCAAAATGCATC
63 TGGGTACTTGAATTTTCAAAATGCATC
91178789 AAAAAGGCCTCAAACTTTTTCAAAAAAAAAGCAATTAAGCCTCTACTCTTTTTTTTACACTCAAT
1 AAAAAGGCCTCAAACTTTTTCAAAAAAAAAG-AATTAAGCC-CTACTCTTTTTTTT-CACTCAAT
* *
91178854 TGAGTACTTGAATTTTCAAAATGCATA
63 TGGGTACTTGAATTTTCAAAATGCATC
* *
91178881 AAAAATGCCTCAAA---TTT-AAACAAAAAA-AATTTAAGTCCCTA--CTTTTTTTTCACTAAAT
1 AAAAAGGCCTCAAACTTTTTCAAA-AAAAAAGAA-TTAAG-CCCTACTCTTTTTTTTCACTCAAT
* **
91178939 TGGATACTTGAATTGCCAAAATGCATC
63 TGGGTACTTGAATTTTCAAAATGCATC
91178966 AAAAA
1 AAAAA
91178971 TATCATTTGA
Statistics
Matches: 161, Mismatches: 14, Indels: 19
0.83 0.07 0.10
Matches are distributed among these distances:
85 34 0.21
86 9 0.06
87 2 0.01
88 11 0.07
89 11 0.07
90 19 0.12
91 10 0.06
92 65 0.40
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.34
Consensus pattern (89 bp):
AAAAAGGCCTCAAACTTTTTCAAAAAAAAAGAATTAAGCCCTACTCTTTTTTTTCACTCAATTGG
GTACTTGAATTTTCAAAATGCATC
Found at i:91179156 original size:19 final size:18
Alignment explanation
Indices: 91179134--91179186 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
91179124 TAAATTTTAA
**
91179134 TAAAAATTATAAAAATTTG
1 TAAAAATTATAAAAA-GCG
*
91179153 TAAACATTTATAAAAAGCG
1 TAAA-AATTATAAAAAGCG
91179172 TAAAAAATTATAAAA
1 T-AAAAATTATAAAA
91179187 TATATAGAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.60, C:0.04, G:0.06, T:0.30
Consensus pattern (18 bp):
TAAAAATTATAAAAAGCG
Found at i:91179204 original size:29 final size:29
Alignment explanation
Indices: 91179172--91179277 Score: 74
Period size: 29 Copynumber: 3.6 Consensus size: 29
91179162 ATAAAAAGCG
91179172 TAAAAAATTATAAAATATATAGAAATACA
1 TAAAAAATTATAAAATATATAGAAATACA
** * *
91179201 TAAAATTTTATAAAGTCATA-AGAAA-ATTA
1 TAAAAAATTATAAAAT-ATATAGAAATA-CA
* * *
91179230 TAAAAAATGTAAAAAAAATATATA-AAATTCG
1 TAAAAAAT-T--ATAAAATATATAGAAATACA
91179261 TAAAAAATTTATAAAAT
1 TAAAAAA-TTATAAAAT
91179278 TTATCATACC
Statistics
Matches: 57, Mismatches: 12, Indels: 16
0.67 0.14 0.19
Matches are distributed among these distances:
28 1 0.02
29 31 0.54
30 4 0.07
31 14 0.25
32 7 0.12
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (29 bp):
TAAAAAATTATAAAATATATAGAAATACA
Found at i:91179251 original size:20 final size:22
Alignment explanation
Indices: 91179223--91179267 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
91179213 AAGTCATAAG
*
91179223 AAAATTATA-AAAAAT-GTAAA
1 AAAAATATATAAAAATCGTAAA
*
91179243 AAAAATATATAAAATTCGTAAA
1 AAAAATATATAAAAATCGTAAA
91179265 AAA
1 AAA
91179268 TTTATAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 8 0.38
21 5 0.24
22 8 0.38
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.24
Consensus pattern (22 bp):
AAAAATATATAAAAATCGTAAA
Found at i:91179256 original size:11 final size:10
Alignment explanation
Indices: 91179135--91179276 Score: 51
Period size: 10 Copynumber: 14.3 Consensus size: 10
91179125 AAATTTTAAT
91179135 AAAAATTATA
1 AAAAATTATA
* *
91179145 AAAATTTGTA
1 AAAAATTATA
* *
91179155 AACATTTAT-
1 AAAAATTATA
***
91179164 AAAAAGCGTA
1 AAAAATTATA
91179174 AAAAATTATA
1 AAAAATTATA
*
91179184 AAATA-TAT-
1 AAAAATTATA
* *
91179192 AGAAA-TACA
1 AAAAATTATA
* *
91179201 TAAAATTTTA
1 AAAAATTATA
* * *
91179211 TAAAGTCATA
1 AAAAATTATA
91179221 AGAAAATTATA
1 A-AAAATTATA
91179232 AAAAATGTA-A
1 AAAAAT-TATA
*
91179242 AAAAAATATA
1 AAAAATTATA
* *
91179252 TAAAATTCGTA
1 AAAAATT-ATA
91179263 AAAAATTTATA
1 AAAAA-TTATA
91179274 AAA
1 AAA
91179277 TTTATCATAC
Statistics
Matches: 92, Mismatches: 32, Indels: 15
0.66 0.23 0.11
Matches are distributed among these distances:
8 5 0.05
9 12 0.13
10 52 0.57
11 21 0.23
12 2 0.02
ACGTcount: A:0.61, C:0.04, G:0.06, T:0.30
Consensus pattern (10 bp):
AAAAATTATA
Found at i:91179273 original size:22 final size:22
Alignment explanation
Indices: 91179202--91179273 Score: 55
Period size: 21 Copynumber: 3.5 Consensus size: 22
91179192 AGAAATACAT
* *
91179202 AAAATTT-TAT-AAAGTCATAA
1 AAAATTTATATAAAAATCGTAA
91179222 GAAAA-TTATA-AAAAAT-GTAA
1 -AAAATTTATATAAAAATCGTAA
** *
91179242 AAAAAATATATAAAATTCGTAA
1 AAAATTTATATAAAAATCGTAA
91179264 AAAATTTATA
1 AAAATTTATA
91179274 AAATTTATCA
Statistics
Matches: 40, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
19 4 0.10
20 9 0.22
21 15 0.38
22 12 0.30
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.31
Consensus pattern (22 bp):
AAAATTTATATAAAAATCGTAA
Found at i:91179537 original size:18 final size:19
Alignment explanation
Indices: 91179508--91179550 Score: 54
Period size: 17 Copynumber: 2.3 Consensus size: 19
91179498 ATATTTTTTA
91179508 TATTTTATTAAAATTTAATT
1 TATTTTATT-AAATTTAATT
*
91179528 T-TTTTA-TAAATTTCATT
1 TATTTTATTAAATTTAATT
91179545 TATTTT
1 TATTTT
91179551 TATTTATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 10 0.48
18 5 0.24
19 5 0.24
20 1 0.05
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (19 bp):
TATTTTATTAAATTTAATT
Found at i:91179834 original size:90 final size:87
Alignment explanation
Indices: 91179716--91179935 Score: 218
Period size: 94 Copynumber: 2.5 Consensus size: 87
91179706 ATTAAATGTT
* * *
91179716 AAAAAAAAGCATGGGCTTAATT-ACTTTTTGTGAAAAAGTTTGATGGC-CTTTTTGATGTATTTT
1 AAAAAAAAG-AAGGGCTTAATTGA-TTTTTTTGAAAAAGTTTGAGGGCTCTTTTTGATGTATTTT
91179779 AAAAGTTCAAGT-ATCCAATTGAGTG
64 AAAAGTTCAAGTCAT--AATTGAGTG
* * *
91179804 CAAAAAAAAGTAAGGGCTTAATTGTTTTTTTTTCGAAAAAGTTTGAGGGCTTATTTTTTTATGTA
1 -AAAAAAAAG-AAGGGCTTAATTG-ATTTTTTT-GAAAAAGTTTGAGGGC-T-CTTTTTGATGTA
*
91179869 TTTTGAAAGTTCAAGTGCATAATTGAGTG
60 TTTTAAAAGTTCAAGT-CATAATTGAGTG
* *
91179898 -AAAAAAA-AAGGACTTAATTGCTTTTTTTGAAAAA-TTTG
1 AAAAAAAAGAAGGGCTTAATTGATTTTTTTGAAAAAGTTTG
91179936 TTCACTGTAA
Statistics
Matches: 113, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
87 4 0.04
88 6 0.05
89 27 0.24
90 18 0.16
91 15 0.13
92 7 0.06
94 34 0.30
96 2 0.02
ACGTcount: A:0.35, C:0.07, G:0.19, T:0.39
Consensus pattern (87 bp):
AAAAAAAAGAAGGGCTTAATTGATTTTTTTGAAAAAGTTTGAGGGCTCTTTTTGATGTATTTTAA
AAGTTCAAGTCATAATTGAGTG
Found at i:91187843 original size:31 final size:31
Alignment explanation
Indices: 91187807--91187865 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
91187797 CAAAAACACA
*
91187807 AAAACAAAATCTGGGTCTTCGAGTTTAATTC
1 AAAACAAAAACTGGGTCTTCGAGTTTAATTC
* *
91187838 AAAACAAAAACTGGGTGTTTGAGTTTAA
1 AAAACAAAAACTGGGTCTTCGAGTTTAA
91187866 AATTTTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.31
Consensus pattern (31 bp):
AAAACAAAAACTGGGTCTTCGAGTTTAATTC
Found at i:91188248 original size:31 final size:31
Alignment explanation
Indices: 91188208--91188272 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
91188198 GTTACAAAAT
* *
91188208 AGTCCTTTAATTATTTGAAAG-TTTTCATTTA
1 AGTCATTTAACTATTTGAAAGCTTTT-ATTTA
91188239 AGTCATTTAACTATTTGAAAGCTTTTATTTA
1 AGTCATTTAACTATTTGAAAGCTTTTATTTA
91188270 AGT
1 AGT
91188273 TTTTTTCTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
31 27 0.87
32 4 0.13
ACGTcount: A:0.31, C:0.09, G:0.11, T:0.49
Consensus pattern (31 bp):
AGTCATTTAACTATTTGAAAGCTTTTATTTA
Found at i:91196375 original size:68 final size:69
Alignment explanation
Indices: 91196251--91196380 Score: 156
Period size: 68 Copynumber: 1.9 Consensus size: 69
91196241 GGCTTTAATG
* * * * ** *
91196251 TTCAATTTGGTACTTGAGTTTTTTTGTACTTAAGTTTAGCTTCAATGTTCACTTTGGGACCTGAA
1 TTCAACTTGATACTTGAGTGTTTGTGTACTTAAGTTTAGCTTCAACATTCAATTTGGGACCTGAA
91196316 TTTT
66 TTTT
* *
91196320 TTCAACTTGATACTTGAG-GTTTGTGTACTTAAGTTTGAG-TTTAACATTCAATTTGGTACCT
1 TTCAACTTGATACTTGAGTGTTTGTGTACTTAAGTTT-AGCTTCAACATTCAATTTGGGACCT
91196381 AAGCTTTTTC
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
68 33 0.65
69 18 0.35
ACGTcount: A:0.22, C:0.13, G:0.18, T:0.47
Consensus pattern (69 bp):
TTCAACTTGATACTTGAGTGTTTGTGTACTTAAGTTTAGCTTCAACATTCAATTTGGGACCTGAA
TTTT
Found at i:91198504 original size:22 final size:20
Alignment explanation
Indices: 91198435--91198488 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
91198425 TTTTTGATGT
*
91198435 GTTAAAATGATTTTAACTTG
1 GTTAAAATCATTTTAACTTG
* **
91198455 ATTGGAATCATTTTAACTTG
1 GTTAAAATCATTTTAACTTG
91198475 GTTAAAATCATTTT
1 GTTAAAATCATTTT
91198489 CGCTTGGTTT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.46
Consensus pattern (20 bp):
GTTAAAATCATTTTAACTTG
Found at i:91200561 original size:19 final size:20
Alignment explanation
Indices: 91200533--91200584 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
91200523 ACAGCTTGTG
* **
91200533 GTATCAATATTTTT-CACGA
1 GTATCGATATTTTTACAAAA
*
91200552 GTATCGATATTTTTATAAAA
1 GTATCGATATTTTTACAAAA
91200572 GTATCGATATTTT
1 GTATCGATATTTT
91200585 CAAAATGATA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 13 0.46
20 15 0.54
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.46
Consensus pattern (20 bp):
GTATCGATATTTTTACAAAA
Found at i:91200596 original size:20 final size:20
Alignment explanation
Indices: 91200551--91200600 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
91200541 ATTTTTCACG
*
91200551 AGTATCGATATTTTTATAAA
1 AGTATCGATATTTTCATAAA
91200571 AGTATCGATATTTTCA-AAA
1 AGTATCGATATTTTCATAAA
*
91200590 TGATATCGATA
1 AG-TATCGATA
91200601 CCAATTTGCG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 4 0.15
20 23 0.85
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.40
Consensus pattern (20 bp):
AGTATCGATATTTTCATAAA
Found at i:91210695 original size:22 final size:23
Alignment explanation
Indices: 91210645--91210707 Score: 67
Period size: 24 Copynumber: 2.7 Consensus size: 23
91210635 TGCCAGAAGC
91210645 AAATAAAAGAAAAATTAGTAATTA
1 AAATAAAAGAAAAATTAG-AATTA
91210669 AAATAAAA-ACAAAATTA-AATTA
1 AAATAAAAGA-AAAATTAGAATTA
* *
91210691 CAATAACAATAAAAATT
1 AAATAA-AAGAAAAATT
91210708 GCTAAAGTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
22 10 0.29
23 9 0.26
24 16 0.46
ACGTcount: A:0.68, C:0.05, G:0.03, T:0.24
Consensus pattern (23 bp):
AAATAAAAGAAAAATTAGAATTA
Found at i:91216272 original size:23 final size:23
Alignment explanation
Indices: 91216244--91216290 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
91216234 AGAATAGTCG
*
91216244 TCAACAAGTACAAAAATATATTA
1 TCAACAAGCACAAAAATATATTA
91216267 TCAACAAGCACAAAAATATATTA
1 TCAACAAGCACAAAAATATATTA
91216290 T
1 T
91216291 TTTCCACCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.55, C:0.15, G:0.04, T:0.26
Consensus pattern (23 bp):
TCAACAAGCACAAAAATATATTA
Found at i:91219690 original size:20 final size:20
Alignment explanation
Indices: 91219638--91219696 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 20
91219628 TTTTTGATGT
* *
91219638 GTTAAAATGATTTTAACTTA
1 GTTAAAATTATTTTAACTTG
** *
91219658 GTTGGAA-TATTTTGACTTG
1 GTTAAAATTATTTTAACTTG
*
91219677 GTTAAAATTATTTTCACTTG
1 GTTAAAATTATTTTAACTTG
91219697 ATTTTAAAAT
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.31, C:0.07, G:0.15, T:0.47
Consensus pattern (20 bp):
GTTAAAATTATTTTAACTTG
Found at i:91219833 original size:43 final size:43
Alignment explanation
Indices: 91219772--91219858 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
91219762 CTTCAAACTT
91219772 AAAAGTCATTTGTCAATTTTAACTAATATTGAAAAATAATTCA
1 AAAAGTCATTTGTCAATTTTAACTAATATTGAAAAATAATTCA
91219815 AAAAGTCATTTGTCAATTTTAACTAATATTGAAAAATAATTCA
1 AAAAGTCATTTGTCAATTTTAACTAATATTGAAAAATAATTCA
91219858 A
1 A
91219859 TTTGTTATAT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.47, C:0.09, G:0.07, T:0.37
Consensus pattern (43 bp):
AAAAGTCATTTGTCAATTTTAACTAATATTGAAAAATAATTCA
Found at i:91222886 original size:21 final size:21
Alignment explanation
Indices: 91222860--91222911 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
91222850 CACAACTGGA
91222860 TCACACGGCCATGT-CCTTAAG
1 TCACACGGCCATGTACCTT-AG
91222881 TCACACAGG-CATGTACCTTAG
1 TCACAC-GGCCATGTACCTTAG
*
91222902 CCACACGGCC
1 TCACACGGCC
91222912 GTGTGCCTAC
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 2 0.07
21 19 0.70
22 6 0.22
ACGTcount: A:0.25, C:0.37, G:0.19, T:0.19
Consensus pattern (21 bp):
TCACACGGCCATGTACCTTAG
Found at i:91225144 original size:25 final size:25
Alignment explanation
Indices: 91225075--91225161 Score: 104
Period size: 25 Copynumber: 3.5 Consensus size: 25
91225065 CAAACATGTA
* *
91225075 AACGGGAAGCTCTTTCGAACTATAT
1 AACGGGAAGCTCTTTCGAGCCATAT
91225100 AACGGGAAGCTCTTTCGAGCCATAT
1 AACGGGAAGCTCTTTCGAGCCATAT
* **
91225125 AATGGGAAGCTCATTT-GAGCCACGT
1 AACGGGAAGCTC-TTTCGAGCCATAT
*
91225150 AACGGGATGCTC
1 AACGGGAAGCTC
91225162 CGGGTAGCCA
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
25 51 0.94
26 3 0.06
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (25 bp):
AACGGGAAGCTCTTTCGAGCCATAT
Found at i:91225709 original size:21 final size:21
Alignment explanation
Indices: 91225685--91225726 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
91225675 TAAATTTAGC
*
91225685 TCAATTTAATACAATTCATAT
1 TCAATTCAATACAATTCATAT
*
91225706 TCAATTCAATCCAATTCATAT
1 TCAATTCAATACAATTCATAT
91225727 CTTAGGAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.19, G:0.00, T:0.40
Consensus pattern (21 bp):
TCAATTCAATACAATTCATAT
Found at i:91227996 original size:23 final size:21
Alignment explanation
Indices: 91227966--91228019 Score: 65
Period size: 20 Copynumber: 2.5 Consensus size: 21
91227956 GAAAAAAAAA
*
91227966 TTGCTATTTTGTTTAGTGTTTT
1 TTGCTATTTTGTTT-GTATTTT
*
91227988 CTTGCTATTTT-TTTTTATTTT
1 -TTGCTATTTTGTTTGTATTTT
91228009 TTGCTATTTTG
1 TTGCTATTTTG
91228020 CTACCATTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 10 0.36
21 5 0.18
22 3 0.11
23 10 0.36
ACGTcount: A:0.09, C:0.07, G:0.13, T:0.70
Consensus pattern (21 bp):
TTGCTATTTTGTTTGTATTTT
Found at i:91228197 original size:18 final size:18
Alignment explanation
Indices: 91228176--91228217 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
91228166 GAAACATTTA
*
91228176 TTTTAATGT-TTTTAGTAT
1 TTTTAATGTATTATA-TAT
*
91228194 TTTTGATGTATTATATAT
1 TTTTAATGTATTATATAT
91228212 TTTTAA
1 TTTTAA
91228218 AAAAATTAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 2
0.80 0.12 0.08
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.26, C:0.00, G:0.10, T:0.64
Consensus pattern (18 bp):
TTTTAATGTATTATATAT
Found at i:91228843 original size:40 final size:43
Alignment explanation
Indices: 91228783--91228863 Score: 100
Period size: 40 Copynumber: 2.0 Consensus size: 43
91228773 AATGTGATGA
91228783 TAAAATATGTATTTTAAAGGAAAT-A-TATAAAT-TTAAATTT
1 TAAAATATGTATTTTAAAGGAAATAATTATAAATATTAAATTT
*
91228823 TAAAA-ATGATATTATT-AAGGAGATAATTATAAATATTAAAT
1 TAAAATATG-TATT-TTAAAGGAAATAATTATAAATATTAAAT
91228864 ATAAATTGTA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
39 3 0.09
40 16 0.46
41 3 0.09
42 7 0.20
43 6 0.17
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.40
Consensus pattern (43 bp):
TAAAATATGTATTTTAAAGGAAATAATTATAAATATTAAATTT
Found at i:91229608 original size:6 final size:6
Alignment explanation
Indices: 91229599--91229623 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
91229589 GTAAAAGTAA
91229599 TTCAAT TTCAAT TTCAAT TTCAAT T
1 TTCAAT TTCAAT TTCAAT TTCAAT T
91229624 ATTATGCTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.52
Consensus pattern (6 bp):
TTCAAT
Found at i:91237911 original size:21 final size:22
Alignment explanation
Indices: 91237862--91237913 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
91237852 TGGAGCAGTT
*
91237862 TTGAGAA--TTTAAGAATTTGG
1 TTGAGAATCTTTAAGAATTTGA
*
91237882 TTGAAAATCTTTAAGAA-TTGA
1 TTGAGAATCTTTAAGAATTTGA
91237903 TTGAGAATCTT
1 TTGAGAATCTT
91237914 AATAAAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 6 0.22
21 13 0.48
22 8 0.30
ACGTcount: A:0.37, C:0.04, G:0.19, T:0.40
Consensus pattern (22 bp):
TTGAGAATCTTTAAGAATTTGA
Found at i:91238023 original size:152 final size:151
Alignment explanation
Indices: 91237831--91238105 Score: 417
Period size: 152 Copynumber: 1.8 Consensus size: 151
91237821 TATAGATTTG
* * *
91237831 ATTTTAGTCAACAATGTTAAATGGAGCAGTTTTGAGAATTTAAGAATTTGGTTGAAAATCTTTAA
1 ATTTTAATCAACAATGTTAAATGGAGCACTTTTGAGAATTTAAGAATTTGGTTAAAAATCTTTAA
* * **
91237896 GA-ATTGATTGAGAATCTTAATAAAAAAATGTTAAATGGATTACTTTTGAGAATTTAGGGGTCGA
66 GATA-CGATTGAGAATCTTAAT-AAAAAATATTAAATGGAGCACTTTTGAGAATTTAGGGGTCGA
91237960 AAATCTTTAAGATTTGATTGCAA
129 AAATCTTTAAGATTTGATTGCAA
* *
91237983 ATTTTAATCAACAATGTTAAATGGAGCACTTTTGAGAATTTAGGTATTTGGTTAAAAATCTTTAA
1 ATTTTAATCAACAATGTTAAATGGAGCACTTTTGAGAATTTAAGAATTTGGTTAAAAATCTTTAA
* * *
91238048 GATACGATTGGGAATCTTAATCAACAATATTAAATGGAGCACTTTTGAGAATTTAGGG
66 GATACGATTGAGAATCTTAATAAAAAATATTAAATGGAGCACTTTTGAGAATTTAGGG
91238106 ATTTGGTTGA
Statistics
Matches: 110, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
151 32 0.29
152 77 0.70
153 1 0.01
ACGTcount: A:0.37, C:0.07, G:0.19, T:0.36
Consensus pattern (151 bp):
ATTTTAATCAACAATGTTAAATGGAGCACTTTTGAGAATTTAAGAATTTGGTTAAAAATCTTTAA
GATACGATTGAGAATCTTAATAAAAAATATTAAATGGAGCACTTTTGAGAATTTAGGGGTCGAAA
ATCTTTAAGATTTGATTGCAA
Found at i:91238074 original size:78 final size:77
Alignment explanation
Indices: 91237838--91238120 Score: 353
Period size: 78 Copynumber: 3.7 Consensus size: 77
91237828 TTGATTTTAG
* *
91237838 TCAACAATGTTAAATGGAGCAGTTTTGAGAATTTAAGAATTTGGTTGAAAATCTTTAAGA-ATTG
1 TCAACAATGTTAAATGGAGCACTTTTGAGAATTT-AGGATTTGGTTGAAAATCTTTAAGATA-TG
91237902 ATTGAGAATCTTAA
64 ATTGAGAATCTTAA
* * ** * *
91237916 TAAAAAAATGTTAAATGGATTACTTTTGAGAATTTAGG----GGTCGAAAATCTTTAAGATTTGA
1 T-CAACAATGTTAAATGGAGCACTTTTGAGAATTTAGGATTTGGTTGAAAATCTTTAAGATATGA
*
91237977 TTGCA-AATTTTAA
65 TTG-AGAATCTTAA
* *
91237990 TCAACAATGTTAAATGGAGCACTTTTGAGAATTTAGGTATTTGGTTAAAAATCTTTAAGATACGA
1 TCAACAATGTTAAATGGAGCACTTTTGAGAATTTAGG-ATTTGGTTGAAAATCTTTAAGATATGA
*
91238055 TTGGGAATCTTAA
65 TTGAGAATCTTAA
*
91238068 TCAACAATATTAAATGGAGCACTTTTGAGAATTTAGGGATTTGGTTGAAAATC
1 TCAACAATGTTAAATGGAGCACTTTTGAGAATTTA-GGATTTGGTTGAAAATC
91238121 AATAATGTTA
Statistics
Matches: 174, Mismatches: 21, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
73 32 0.18
74 31 0.18
75 1 0.01
78 80 0.46
79 30 0.17
ACGTcount: A:0.37, C:0.07, G:0.19, T:0.36
Consensus pattern (77 bp):
TCAACAATGTTAAATGGAGCACTTTTGAGAATTTAGGATTTGGTTGAAAATCTTTAAGATATGAT
TGAGAATCTTAA
Found at i:91238142 original size:50 final size:51
Alignment explanation
Indices: 91238066--91238170 Score: 140
Period size: 50 Copynumber: 2.1 Consensus size: 51
91238056 TGGGAATCTT
* * **
91238066 AATCAACAATATTAAATGGAGCACTTTTGAGAATTTAGGGATTTGGTTGAA
1 AATCAACAATATTAAATGGAGCACTTTTGAGAAATTAGAGATTTAATTGAA
* * *
91238117 AATCAATAATGTT-AATGGAGCACTTTTTAGAAATTAGAGATTTAATTGAA
1 AATCAACAATATTAAATGGAGCACTTTTGAGAAATTAGAGATTTAATTGAA
91238167 AATC
1 AATC
91238171 TTTTAACCTT
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
50 36 0.77
51 11 0.23
ACGTcount: A:0.40, C:0.08, G:0.18, T:0.34
Consensus pattern (51 bp):
AATCAACAATATTAAATGGAGCACTTTTGAGAAATTAGAGATTTAATTGAA
Found at i:91240327 original size:24 final size:25
Alignment explanation
Indices: 91240299--91240351 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
91240289 TAGTATACCT
91240299 TCAAAA-AAATTTTGTTAAAAGTTG
1 TCAAAATAAATTTTGTTAAAAGTTG
***
91240323 TCAAAATTTTTTTTGTTAAAAGTTG
1 TCAAAATAAATTTTGTTAAAAGTTG
91240348 TCAA
1 TCAA
91240352 GAATGAGCTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 6 0.24
25 19 0.76
ACGTcount: A:0.40, C:0.06, G:0.11, T:0.43
Consensus pattern (25 bp):
TCAAAATAAATTTTGTTAAAAGTTG
Found at i:91241089 original size:23 final size:21
Alignment explanation
Indices: 91241063--91241116 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 21
91241053 CCCTATATAG
*
91241063 TATGCGAACTATACATGTTTAGT
1 TATGTGAAC-ATACATGTTTA-T
*
91241086 TATGTGAAACATACTTGTTTAT
1 TATGTG-AACATACATGTTTAT
91241108 TATGTGAAC
1 TATGTGAAC
91241117 CTTACATCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 3 0.11
22 7 0.25
23 15 0.54
24 3 0.11
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.41
Consensus pattern (21 bp):
TATGTGAACATACATGTTTAT
Found at i:91241113 original size:22 final size:23
Alignment explanation
Indices: 91241073--91241115 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
91241063 TATGCGAACT
91241073 ATACATGTTTAGTTATGTGAAAC
1 ATACATGTTTAGTTATGTGAAAC
*
91241096 ATACTTGTTTA-TTATGTGAA
1 ATACATGTTTAGTTATGTGAA
91241116 CCTTACATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.33, C:0.07, G:0.16, T:0.44
Consensus pattern (23 bp):
ATACATGTTTAGTTATGTGAAAC
Found at i:91241368 original size:15 final size:15
Alignment explanation
Indices: 91241334--91241388 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
91241324 CCATATGAAC
*
91241334 CCCTAGGTGTGCGAA
1 CCCTAGGTGTGCAAA
*
91241349 CCCTAGGTGTGTAAA
1 CCCTAGGTGTGCAAA
* *
91241364 TCCTA-ATGTGCAAA
1 CCCTAGGTGTGCAAA
91241378 CCCGTAGGTGT
1 CCC-TAGGTGT
91241389 AATCCCTAAT
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
14 9 0.29
15 19 0.61
16 3 0.10
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (15 bp):
CCCTAGGTGTGCAAA
Done.