Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 266 of 295
Found at i:91241396 original size:28 final size:28
Alignment explanation
Indices: 91241357--91241425 Score: 77
Period size: 28 Copynumber: 2.5 Consensus size: 28
91241347 AACCCTAGGT
* *
91241357 GTGTAAAT-CCTAATGTGCAAACCCGTAG
1 GTGT-AATCCCTAATGAGCAAACCCCTAG
*
91241385 GTGTAATCCCTAATGAGCGAACCCCTAG
1 GTGTAATCCCTAATGAGCAAACCCCTAG
* *
91241413 GTGTGACCCCTAA
1 GTGTAATCCCTAA
91241426 AGTGTGAACC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
27 3 0.09
28 32 0.91
ACGTcount: A:0.29, C:0.26, G:0.22, T:0.23
Consensus pattern (28 bp):
GTGTAATCCCTAATGAGCAAACCCCTAG
Found at i:91241434 original size:28 final size:28
Alignment explanation
Indices: 91241376--91241436 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 28
91241366 CTAATGTGCA
* * *
91241376 AACCCGTAGGTGTAATCCCTAATGAGCG
1 AACCCCTAGGTGTAACCCCTAAAGAGCG
* * *
91241404 AACCCCTAGGTGTGACCCCTAAAGTGTG
1 AACCCCTAGGTGTAACCCCTAAAGAGCG
91241432 AACCC
1 AACCC
91241437 ACATGTTCGA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.28, C:0.30, G:0.23, T:0.20
Consensus pattern (28 bp):
AACCCCTAGGTGTAACCCCTAAAGAGCG
Found at i:91242904 original size:23 final size:22
Alignment explanation
Indices: 91242877--91242926 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 22
91242867 TTCTTTTAAA
*
91242877 TTATTT-CTCTCTTTATTTTTTC
1 TTATTTCCTCTCTTT-TTCTTTC
91242899 TATATTTCCTCTCTTTTTCTTTC
1 T-TATTTCCTCTCTTTTTCTTTC
91242922 TTATT
1 TTATT
91242927 CCTTTATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 5 0.20
23 12 0.48
24 8 0.32
ACGTcount: A:0.10, C:0.20, G:0.00, T:0.70
Consensus pattern (22 bp):
TTATTTCCTCTCTTTTTCTTTC
Found at i:91243220 original size:17 final size:18
Alignment explanation
Indices: 91243198--91243232 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
91243188 CCATTTTCTC
91243198 TATTTTT-TAAATTTTTT
1 TATTTTTATAAATTTTTT
*
91243215 TATTTTTATGAATTTTTT
1 TATTTTTATAAATTTTTT
91243233 AATAATTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (18 bp):
TATTTTTATAAATTTTTT
Found at i:91246538 original size:24 final size:25
Alignment explanation
Indices: 91246501--91246549 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
91246491 AAAGATGAGG
* *
91246501 GAAGAAAAGGGAAAA-GAACGAAAA
1 GAAGAAAAAGGAAAATGAAAGAAAA
*
91246525 GAAGAAAAATGAAAATGAAAGAAAA
1 GAAGAAAAAGGAAAATGAAAGAAAA
91246550 TGAAAAGGGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.69, C:0.02, G:0.24, T:0.04
Consensus pattern (25 bp):
GAAGAAAAAGGAAAATGAAAGAAAA
Found at i:91248255 original size:17 final size:18
Alignment explanation
Indices: 91248219--91248261 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
91248209 ATCGTTTTTA
* *
91248219 TTTACGAAAACCTTAGTT
1 TTTAGGAAAACCTGAGTT
91248237 TTTAGGAAAACC-GAGTT
1 TTTAGGAAAACCTGAGTT
91248254 TTTGAGGA
1 TTT-AGGA
91248262 GTTGCAGTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
18 15 0.68
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.35
Consensus pattern (18 bp):
TTTAGGAAAACCTGAGTT
Found at i:91255655 original size:29 final size:29
Alignment explanation
Indices: 91255613--91255699 Score: 156
Period size: 29 Copynumber: 3.0 Consensus size: 29
91255603 CTCAGAGGCC
91255613 CCCATGTGCAATGCTATAAGTTATTTAGA
1 CCCATGTGCAATGCTATAAGTTATTTAGA
*
91255642 CCCATGTGCGATGCTATAAGTTATTTAGA
1 CCCATGTGCAATGCTATAAGTTATTTAGA
*
91255671 CTCATGTGCAATGCTATAAGTTATTTAGA
1 CCCATGTGCAATGCTATAAGTTATTTAGA
91255700 AAGTGCTTTT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 55 1.00
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (29 bp):
CCCATGTGCAATGCTATAAGTTATTTAGA
Found at i:91264070 original size:63 final size:63
Alignment explanation
Indices: 91263993--91264119 Score: 236
Period size: 63 Copynumber: 2.0 Consensus size: 63
91263983 TCGACGACAG
*
91263993 TATGTTTGTAAGTTTCTTTGTACTTTGCAGACAAAGAAAAAGGTTTTCTTGAGGTTTCTTCTA
1 TATGTTTGTAAGTTTCTTTGTACTTTGCAGACAAAGAAAAAGGTTTTCTTGAAGTTTCTTCTA
*
91264056 TATGTTTGTAAGTTTCTTTGTACTTTGCAGACAATGAAAAAGGTTTTCTTGAAGTTTCTTCTA
1 TATGTTTGTAAGTTTCTTTGTACTTTGCAGACAAAGAAAAAGGTTTTCTTGAAGTTTCTTCTA
91264119 T
1 T
91264120 CATTTCATGT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 62 1.00
ACGTcount: A:0.25, C:0.11, G:0.18, T:0.46
Consensus pattern (63 bp):
TATGTTTGTAAGTTTCTTTGTACTTTGCAGACAAAGAAAAAGGTTTTCTTGAAGTTTCTTCTA
Found at i:91267116 original size:23 final size:24
Alignment explanation
Indices: 91267065--91267116 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 24
91267055 ATAAAATACC
*
91267065 TATTTTTTTCTTTGTCTCTTTTCT
1 TATTTTTTTCTTTGTCTCTTTTAT
*
91267089 T-TTTTTTTCTTTGT-TTTTTTAT
1 TATTTTTTTCTTTGTCTCTTTTAT
91267111 TATTTT
1 TATTTT
91267117 ATAATAAGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 7 0.28
23 17 0.68
24 1 0.04
ACGTcount: A:0.06, C:0.10, G:0.04, T:0.81
Consensus pattern (24 bp):
TATTTTTTTCTTTGTCTCTTTTAT
Found at i:91270795 original size:28 final size:28
Alignment explanation
Indices: 91270762--91270837 Score: 100
Period size: 28 Copynumber: 2.7 Consensus size: 28
91270752 ATCAAATATG
*
91270762 ACACTTAGTGTGCGAAATATTGAGAATGG
1 ACACTTAGTGTGCGAAATATTGAGAAT-A
* *
91270791 A-ACTTAATGTGCGAGATATTGAGAATA
1 ACACTTAGTGTGCGAAATATTGAGAATA
*
91270818 ACACTTAGTGTGCAAAATAT
1 ACACTTAGTGTGCGAAATAT
91270838 CGAATGATTC
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
27 1 0.03
28 38 0.95
29 1 0.03
ACGTcount: A:0.38, C:0.11, G:0.22, T:0.29
Consensus pattern (28 bp):
ACACTTAGTGTGCGAAATATTGAGAATA
Found at i:91272926 original size:43 final size:42
Alignment explanation
Indices: 91272842--91272953 Score: 136
Period size: 43 Copynumber: 2.6 Consensus size: 42
91272832 ATCGAGATGT
* *
91272842 GATTACATGTAAGATCATGTCTGGGACATTGGCATTGTATTGA
1 GATTAC-TGTAAGACCATGTCTGGGACATTGACATTGTATTGA
*
91272885 GATTACGTGTAAGACCATGTCTGGGACATTGACATCT-TATTGT
1 GATTAC-TGTAAGACCATGTCTGGGACATTGACAT-TGTATTGA
* *
91272928 GATTTCTCGTAAGACCCTGTCTGGGA
1 GATTACT-GTAAGACCATGTCTGGGA
91272954 TAGTGGCATC
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
42 1 0.02
43 59 0.97
44 1 0.02
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (42 bp):
GATTACTGTAAGACCATGTCTGGGACATTGACATTGTATTGA
Found at i:91275068 original size:28 final size:28
Alignment explanation
Indices: 91275032--91275103 Score: 108
Period size: 28 Copynumber: 2.6 Consensus size: 28
91275022 GGAGTAGGTT
* *
91275032 TATGCATTTGTATCTGATAACCTCTATA
1 TATGTATTTATATCTGATAACCTCTATA
* *
91275060 TATGTATTTATATATGATAAGCTCTATA
1 TATGTATTTATATCTGATAACCTCTATA
91275088 TATGTATTTATATCTG
1 TATGTATTTATATCTG
91275104 CCTCTAACAT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.31, C:0.11, G:0.11, T:0.47
Consensus pattern (28 bp):
TATGTATTTATATCTGATAACCTCTATA
Found at i:91275557 original size:255 final size:255
Alignment explanation
Indices: 91275106--91275612 Score: 951
Period size: 255 Copynumber: 2.0 Consensus size: 255
91275096 TATATCTGCC
* *
91275106 TCTAACATACTTTGTTTCTATTTCCGTTCCTGAATCAAAAAACTGCCTGAATAATAATATCCTGA
1 TCTAACATACTTTGTTTCTATTTCCGTTCCTAAATAAAAAAACTGCCTGAATAATAATATCCTGA
*
91275171 AGCATGTTTGTTATTATTCCGCTTAATTGATTAGATAGGTTACACATTAAGTTTGTAAACTCATT
66 AGCATGTTTGTTATTATTCCGCTTAATTGATTAAATAGGTTACACATTAAGTTTGTAAACTCATT
*
91275236 TTGTCTGTTTGCTTGAATTTCAAGAAATCCTTAAGCTTAGGCGGGTTGGTATTTCAGGAGTTCGA
131 TTGTCTGTTTGCTTAAATTTCAAGAAATCCTTAAGCTTAGGCGGGTTGGTATTTCAGGAGTTCGA
91275301 TCATTCCATTTAGACTTTCTATTATTTCTATTCTAGCTTTATACTTTTGCAAACTTTGTT
196 TCATTCCATTTAGACTTTCTATTATTTCTATTCTAGCTTTATACTTTTGCAAACTTTGTT
*
91275361 TCTAACATACTTTGTTTCTGTTTCCGTTCCTAAATAAAAAAACTGCCTGAATAATAATATCCTGA
1 TCTAACATACTTTGTTTCTATTTCCGTTCCTAAATAAAAAAACTGCCTGAATAATAATATCCTGA
* *
91275426 AGCATGTTTGTTATTATTCTGCTTAATTGATTAAATAGGTTACACATTAAGTTTGTAACCTCATT
66 AGCATGTTTGTTATTATTCCGCTTAATTGATTAAATAGGTTACACATTAAGTTTGTAAACTCATT
91275491 TTGTCTGTTTGCTTAAATTTCAAGAAATCCTTAAGCTTAGGCGGGTTGGTATTTCAGGAGTTCGA
131 TTGTCTGTTTGCTTAAATTTCAAGAAATCCTTAAGCTTAGGCGGGTTGGTATTTCAGGAGTTCGA
91275556 TCATTCCATTTAGACTTTCTATTATTTCTATTCTAGCTTTATACTTTTGCAAACTTT
196 TCATTCCATTTAGACTTTCTATTATTTCTATTCTAGCTTTATACTTTTGCAAACTTT
91275613 TCAGGCTGTT
Statistics
Matches: 245, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
255 245 1.00
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (255 bp):
TCTAACATACTTTGTTTCTATTTCCGTTCCTAAATAAAAAAACTGCCTGAATAATAATATCCTGA
AGCATGTTTGTTATTATTCCGCTTAATTGATTAAATAGGTTACACATTAAGTTTGTAAACTCATT
TTGTCTGTTTGCTTAAATTTCAAGAAATCCTTAAGCTTAGGCGGGTTGGTATTTCAGGAGTTCGA
TCATTCCATTTAGACTTTCTATTATTTCTATTCTAGCTTTATACTTTTGCAAACTTTGTT
Found at i:91275937 original size:13 final size:13
Alignment explanation
Indices: 91275919--91275952 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
91275909 GTACTTCTGC
91275919 TTTAGCTATGCTA
1 TTTAGCTATGCTA
*
91275932 TTTAGCTATGTTA
1 TTTAGCTATGCTA
91275945 TTTAGCTA
1 TTTAGCTA
91275953 GAAAACACTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.24, C:0.12, G:0.15, T:0.50
Consensus pattern (13 bp):
TTTAGCTATGCTA
Found at i:91276517 original size:15 final size:16
Alignment explanation
Indices: 91276444--91276528 Score: 59
Period size: 16 Copynumber: 5.2 Consensus size: 16
91276434 ACAAATAAAT
* *
91276444 GAAACAAAAAGAAAAA
1 GAAAGAAAAAGAGAAA
* *
91276460 GAAAGAAACAATA-ACA
1 GAAAGAAA-AAGAGAAA
*
91276476 GAATAGAAAACGA-AATA
1 GAA-AGAAAAAGAGAA-A
*
91276493 GAGGAGAAAAAG-GAAA
1 GA-AAGAAAAAGAGAAA
91276509 GAAAGAAAAAGAGAAA
1 GAAAGAAAAAGAGAAA
91276525 GAAA
1 GAAA
91276529 AAGGAGAAAA
Statistics
Matches: 54, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
15 8 0.15
16 26 0.48
17 20 0.37
ACGTcount: A:0.71, C:0.05, G:0.21, T:0.04
Consensus pattern (16 bp):
GAAAGAAAAAGAGAAA
Found at i:91276525 original size:12 final size:13
Alignment explanation
Indices: 91276497--91276537 Score: 57
Period size: 12 Copynumber: 3.1 Consensus size: 13
91276487 GAAATAGAGG
91276497 AGAAAAAGGAAAGAA
1 AGAAAAAGG--AGAA
91276512 AGAAAAA-GAGAA
1 AGAAAAAGGAGAA
91276524 AGAAAAAGGAGAA
1 AGAAAAAGGAGAA
91276537 A
1 A
91276538 AGCTTAGGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 11 0.44
13 6 0.24
14 1 0.04
15 7 0.28
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (13 bp):
AGAAAAAGGAGAA
Found at i:91277921 original size:173 final size:174
Alignment explanation
Indices: 91277632--91277945 Score: 526
Period size: 173 Copynumber: 1.8 Consensus size: 174
91277622 ATATACTCAT
* *
91277632 GAATTGAGTATGGTATGAAATGATGTATTCATGAATTAAGTACTGCATGACTGATGCCATTGTAC
1 GAATTGAGTATGGTATGAAATGATGTATCCATGAATTAAGTACTGCATGACTAATGCCATTGTAC
* *
91277697 GAATAAATATGGTTGATATGTGAATAAATATTTATATAATAATTGTGTGAATTAGGATATTGTTT
66 GAATAAATATGGTTGATATGTGAATAAATATTTATATAACAATTGTGTGAATTAGAATATTGTTT
91277762 -AATAAAAAAATGATAGTTATGATATGATACTAGACATTAATGA
131 AAATAAAAAAATGATAGTTATGATATGATACTAGACATTAATGA
* * *
91277805 GAATTGAGTATGGTATGAAATGATGTATCCATGAATTGAGTATTGCATGACTAATGCCATTGTAT
1 GAATTGAGTATGGTATGAAATGATGTATCCATGAATTAAGTACTGCATGACTAATGCCATTGTAC
91277870 GAAT-AATATGGTTTGATATGTGAAT-AATCATTTATATAACAATTGTGTGAATTAGAATATTGT
66 GAATAAATATGG-TTGATATGTGAATAAAT-ATTTATATAACAATTGTGTGAATTAGAATATTGT
91277933 TTAAATAAAAAAA
129 TTAAATAAAAAAA
91277946 ATAATAGTCA
Statistics
Matches: 131, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
172 10 0.08
173 111 0.85
174 10 0.08
ACGTcount: A:0.39, C:0.05, G:0.19, T:0.37
Consensus pattern (174 bp):
GAATTGAGTATGGTATGAAATGATGTATCCATGAATTAAGTACTGCATGACTAATGCCATTGTAC
GAATAAATATGGTTGATATGTGAATAAATATTTATATAACAATTGTGTGAATTAGAATATTGTTT
AAATAAAAAAATGATAGTTATGATATGATACTAGACATTAATGA
Found at i:91278083 original size:31 final size:31
Alignment explanation
Indices: 91278020--91278088 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 31
91278010 TGTTTTTAAA
* * * *
91278020 TATTCAGATTATAGAAATAGCATTTAGCTTT
1 TATTCAGATTATAAAAATACCACTGAGCTTT
* *
91278051 TATTCGGATTATAAAAATACCACTGAGTTTT
1 TATTCAGATTATAAAAATACCACTGAGCTTT
*
91278082 TACTCAG
1 TATTCAG
91278089 CATACGATTT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (31 bp):
TATTCAGATTATAAAAATACCACTGAGCTTT
Found at i:91286191 original size:42 final size:42
Alignment explanation
Indices: 91286145--91286229 Score: 102
Period size: 42 Copynumber: 2.0 Consensus size: 42
91286135 AAACCATGTA
* *
91286145 ACTCTCTCACTTGAG-TCACATGGACGTGTG-TCAGGCCGTGTG
1 ACTCTCTAACTTG-GCTCACACGGACGTGTGCT-AGGCCGTGTG
* *
91286187 ACTCTCTAACTTGGCTCACACGGTCGTGTGCTAGTCCGTGTG
1 ACTCTCTAACTTGGCTCACACGGACGTGTGCTAGGCCGTGTG
91286229 A
1 A
91286230 AGTACTGGTA
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
41 1 0.03
42 35 0.95
43 1 0.03
ACGTcount: A:0.16, C:0.27, G:0.27, T:0.29
Consensus pattern (42 bp):
ACTCTCTAACTTGGCTCACACGGACGTGTGCTAGGCCGTGTG
Found at i:91295241 original size:16 final size:17
Alignment explanation
Indices: 91295222--91295257 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
91295212 TTCCCAATTT
*
91295222 TTTCTTTA-GTTTTCTA
1 TTTCTTTACGTTCTCTA
91295238 TTTCTTTACGTTCTCTA
1 TTTCTTTACGTTCTCTA
91295255 TTT
1 TTT
91295258 TTTCCTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.11, C:0.17, G:0.06, T:0.67
Consensus pattern (17 bp):
TTTCTTTACGTTCTCTA
Found at i:91301052 original size:5 final size:5
Alignment explanation
Indices: 91301015--91301122 Score: 76
Period size: 5 Copynumber: 21.4 Consensus size: 5
91301005 ATAGGGGTAG
* * * * * *
91301015 GATAT GATTT TATAT AATAT GATAA GCTAT GATTT GATAT GATAT GATA-
1 GATAT GATAT GATAT GATAT GATAT GATAT GATAT GATAT GATAT GATAT
* * * * *
91301064 CATTAT GATAT GATAA GATAG GATAT AATTT G-TAT GAAATAT GATAT
1 GA-TAT GATAT GATAT GATAT GATAT GATAT GATAT G--ATAT GATAT
91301111 GATAT GATAT GA
1 GATAT GATAT GA
91301123 AATATTAAGA
Statistics
Matches: 78, Mismatches: 20, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
4 4 0.05
5 69 0.88
6 1 0.01
7 4 0.05
ACGTcount: A:0.41, C:0.02, G:0.18, T:0.40
Consensus pattern (5 bp):
GATAT
Found at i:91301902 original size:27 final size:27
Alignment explanation
Indices: 91301864--91301920 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
91301854 TTATAGTAGG
91301864 ATAAAATAAAAAATTCCTATGATTATT
1 ATAAAATAAAAAATTCCTATGATTATT
*
91301891 ATAAAATAAAAAATTTCTATGATTATT
1 ATAAAATAAAAAATTCCTATGATTATT
91301918 ATA
1 ATA
91301921 GGAACTCCTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.53, C:0.05, G:0.04, T:0.39
Consensus pattern (27 bp):
ATAAAATAAAAAATTCCTATGATTATT
Found at i:91307245 original size:29 final size:30
Alignment explanation
Indices: 91307203--91307259 Score: 98
Period size: 29 Copynumber: 1.9 Consensus size: 30
91307193 TAGAGAAATT
91307203 ATTATTTTTTATATATTTTTTGAATTTTAA
1 ATTATTTTTTATATATTTTTTGAATTTTAA
*
91307233 ATTA-TTTTTATATTTTTTTTGAATTTT
1 ATTATTTTTTATATATTTTTTGAATTTT
91307260 TTAGATTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 22 0.85
30 4 0.15
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (30 bp):
ATTATTTTTTATATATTTTTTGAATTTTAA
Found at i:91307778 original size:24 final size:24
Alignment explanation
Indices: 91307737--91307786 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
91307727 TGGTTTAAGG
*
91307737 TTAGGGTTTAGTAGTTTAAG-GTTT
1 TTAGGGTTTAGGAGTTT-AGTGTTT
*
91307761 TTAGGGTTTAGGATTTTAGTGTTT
1 TTAGGGTTTAGGAGTTTAGTGTTT
91307785 TT
1 TT
91307787 TAAGGAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 2 0.09
24 21 0.91
ACGTcount: A:0.18, C:0.00, G:0.28, T:0.54
Consensus pattern (24 bp):
TTAGGGTTTAGGAGTTTAGTGTTT
Found at i:91307846 original size:25 final size:25
Alignment explanation
Indices: 91307795--91307846 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
91307785 TTTAAGGAAA
* **
91307795 AATTAATTAAATTAGAGTTGAGGTT
1 AATTAATTAAATTAGACTTGAAATT
91307820 AATTAATTAAATTAG-CTATGAAATT
1 AATTAATTAAATTAGACT-TGAAATT
91307845 AA
1 AA
91307847 AAAAATCAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 1 0.04
25 22 0.96
ACGTcount: A:0.46, C:0.02, G:0.13, T:0.38
Consensus pattern (25 bp):
AATTAATTAAATTAGACTTGAAATT
Found at i:91311465 original size:128 final size:129
Alignment explanation
Indices: 91311167--91311538 Score: 621
Period size: 128 Copynumber: 2.9 Consensus size: 129
91311157 ACATTTATTT
* * *
91311167 TAATAAAAATTATTGGCTAATTTAAAAGAACATTTATTATATTAAAATT-AAAAAAGTAAAGTAC
1 TAATAAAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAAGTAAAGTAC
*
91311231 AATTAAAATATTAAAAACAACTTTTATTTT-TTAATTAAAACTATATAAAAATAAATATAAAAA
66 AATTAAAATATTAAAAACAACTTTTATTTTATTAATTGAAACTATATAAAAATAAATATAAAAA
*
91311294 TAAT-AAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAAATAAAGTAC
1 TAATAAAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAAGTAAAGTAC
91311358 AATTAAAATATT-AAAA-AACTTTTATTTTATTAATTGAAACTATATAAAAATTAAATATAAAAA
66 AATTAAAATATTAAAAACAACTTTTATTTTATTAATTGAAACTATATAAAAA-TAAATATAAAAA
91311421 TAATAAAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAAGTAAAGTAC
1 TAATAAAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAAGTAAAGTAC
*
91311486 AATTTAAATATTAAAAACAACTTTTTATTTTATT-ATATGAAACTATATAAAAA
66 AATTAAAATATTAAAAACAAC-TTTTATTTTATTAAT-TGAAACTATATAAAAA
91311539 AGGTTTCTAC
Statistics
Matches: 230, Mismatches: 7, Indels: 12
0.92 0.03 0.05
Matches are distributed among these distances:
125 12 0.05
126 65 0.28
127 46 0.20
128 70 0.30
129 4 0.02
130 5 0.02
131 28 0.12
ACGTcount: A:0.55, C:0.05, G:0.04, T:0.36
Consensus pattern (129 bp):
TAATAAAAAATATTGGCTAATTTAAAAGAACATTTATTTTAATAAAATTAAAAAAAGTAAAGTAC
AATTAAAATATTAAAAACAACTTTTATTTTATTAATTGAAACTATATAAAAATAAATATAAAAA
Found at i:91312592 original size:7 final size:7
Alignment explanation
Indices: 91312580--91312612 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
91312570 TTATATAGGT
91312580 AATACTA
1 AATACTA
91312587 AATACTA
1 AATACTA
91312594 AATACTA
1 AATACTA
91312601 AATACTA
1 AATACTA
91312608 AATAC
1 AATAC
91312613 GAAACGACTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:91313782 original size:22 final size:23
Alignment explanation
Indices: 91313757--91313799 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
91313747 TAGAGATTTT
91313757 TTTGAAAAAAATT-AGAGAAAGC
1 TTTGAAAAAAATTGAGAGAAAGC
*
91313779 TTTGACAAAAATTGAGAGAAA
1 TTTGAAAAAAATTGAGAGAAA
91313800 TTTGAGAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.53, C:0.05, G:0.19, T:0.23
Consensus pattern (23 bp):
TTTGAAAAAAATTGAGAGAAAGC
Found at i:91313817 original size:9 final size:10
Alignment explanation
Indices: 91313790--91313840 Score: 66
Period size: 11 Copynumber: 4.7 Consensus size: 10
91313780 TTGACAAAAA
91313790 TTGAGAGAAAT
1 TTGAGAG-AAT
91313801 TTGAGAGAAT
1 TTGAGAGAAT
91313811 TTGGAGAGAAT
1 TT-GAGAGAAT
91313822 TTAGAGAGAAT
1 TT-GAGAGAAT
91313833 TGTGAGAG
1 T-TGAGAG
91313841 GACTATTGTG
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
10 5 0.14
11 31 0.84
12 1 0.03
ACGTcount: A:0.39, C:0.00, G:0.33, T:0.27
Consensus pattern (10 bp):
TTGAGAGAAT
Found at i:91325621 original size:54 final size:53
Alignment explanation
Indices: 91325562--91325667 Score: 142
Period size: 54 Copynumber: 2.0 Consensus size: 53
91325552 ATACTTTGAA
* *
91325562 TTTGGGTCACACGGGCGTGTGCT-TGAACGTGTGCTAGACCGTGTAACTCTCTGT
1 TTTGGGTCACACGGGCGTGTGCTCAG-ACATGTGCTAGACCGTG-AACTCTCTGT
* * *
91325616 TTTGGGTCACACGGGTGTGTTCTCAGCCATGTGCTAGACCGTGAACTCTCTG
1 TTTGGGTCACACGGGCGTGTGCTCAGACATGTGCTAGACCGTGAACTCTCTG
91325668 AGTTACCCTA
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
53 9 0.20
54 36 0.78
55 1 0.02
ACGTcount: A:0.15, C:0.24, G:0.30, T:0.31
Consensus pattern (53 bp):
TTTGGGTCACACGGGCGTGTGCTCAGACATGTGCTAGACCGTGAACTCTCTGT
Found at i:91336451 original size:21 final size:21
Alignment explanation
Indices: 91336425--91336468 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
91336415 GAATTTGGAG
91336425 GATTGCATC-AAAAGACT-TATT
1 GATTGC-TCTAAAAGA-TATATT
91336446 GATTGCTCTAAAAGATATATT
1 GATTGCTCTAAAAGATATATT
91336467 GA
1 GA
91336469 CTATTTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (21 bp):
GATTGCTCTAAAAGATATATT
Found at i:91339328 original size:14 final size:15
Alignment explanation
Indices: 91339311--91339339 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
91339301 GTGTTTAATT
91339311 TTTAATGA-TATAAA
1 TTTAATGATTATAAA
91339325 TTTAATGATTATAAA
1 TTTAATGATTATAAA
91339340 ATTGAATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (15 bp):
TTTAATGATTATAAA
Found at i:91339397 original size:5 final size:5
Alignment explanation
Indices: 91339384--91339416 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
91339374 TTCTCATACC
*
91339384 TTTAC TTTAA TTTAA TTTAA TTTAA TTTAA TTT
1 TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTT
91339417 GGTAATGATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (5 bp):
TTTAA
Found at i:91339484 original size:17 final size:17
Alignment explanation
Indices: 91339462--91339494 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
91339452 TGCATGAGAA
91339462 AGTT-AAAGATATAAAAT
1 AGTTAAAAG-TATAAAAT
91339479 AGTTAAAAGTATAAAA
1 AGTTAAAAGTATAAAA
91339495 AAAAAAAAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.61, C:0.00, G:0.12, T:0.27
Consensus pattern (17 bp):
AGTTAAAAGTATAAAAT
Found at i:91341714 original size:19 final size:19
Alignment explanation
Indices: 91341687--91341726 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
91341677 TATGAAATAT
* *
91341687 AAAATTTAAATATTTTTAA
1 AAAAATTAAATATTTGTAA
*
91341706 AAAAATTAAGTATTTGTAA
1 AAAAATTAAATATTTGTAA
91341725 AA
1 AA
91341727 TTTAATGTAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (19 bp):
AAAAATTAAATATTTGTAA
Found at i:91346528 original size:9 final size:9
Alignment explanation
Indices: 91346514--91346619 Score: 158
Period size: 9 Copynumber: 11.6 Consensus size: 9
91346504 TTTGGTTAAA
91346514 AATTACCCG
1 AATTACCCG
91346523 AATTACCCG
1 AATTACCCG
91346532 AATTACCCG
1 AATTACCCG
*
91346541 ACTTACCCG
1 AATTACCCG
91346550 AATTACCCG
1 AATTACCCG
*
91346559 ACTTACCCG
1 AATTACCCG
91346568 AATTACCCG
1 AATTACCCG
*
91346577 AATTACCCT
1 AATTACCCG
*
91346586 AATTACCTG
1 AATTACCCG
91346595 AAAATTACCCG
1 --AATTACCCG
91346606 AATTACCCG
1 AATTACCCG
91346615 AATTA
1 AATTA
91346620 AATCACTACA
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
9 79 0.91
11 8 0.09
ACGTcount: A:0.34, C:0.32, G:0.09, T:0.25
Consensus pattern (9 bp):
AATTACCCG
Found at i:91346648 original size:17 final size:17
Alignment explanation
Indices: 91346626--91346686 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
91346616 ATTAAATCAC
91346626 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
91346643 TACATAAATCTTTGAATCAC
1 TACAT-AA--TTAAAAACAT
*
91346663 TACATAATTAAAAATAT
1 TACATAATTAAAAACAT
91346680 TACATAA
1 TACATAA
91346687 GTCTTTGAAT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
17 17 0.53
18 2 0.06
19 2 0.06
20 11 0.34
ACGTcount: A:0.52, C:0.13, G:0.02, T:0.33
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:91346668 original size:20 final size:20
Alignment explanation
Indices: 91346643--91346706 Score: 62
Period size: 20 Copynumber: 3.4 Consensus size: 20
91346633 TTAAAAACAT
91346643 TACATAAATCTTTGAATCAC
1 TACATAAATCTTTGAATCAC
*** *
91346663 TACAT-AAT-TAAAAAT-AT
1 TACATAAATCTTTGAATCAC
*
91346680 TACATAAGTCTTTGAATCAC
1 TACATAAATCTTTGAATCAC
91346700 TACATAA
1 TACATAA
91346707 TTAAAAATAT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
17 6 0.19
18 6 0.19
19 7 0.22
20 13 0.41
ACGTcount: A:0.45, C:0.16, G:0.05, T:0.34
Consensus pattern (20 bp):
TACATAAATCTTTGAATCAC
Found at i:91346726 original size:37 final size:37
Alignment explanation
Indices: 91346620--91346732 Score: 192
Period size: 37 Copynumber: 3.1 Consensus size: 37
91346610 ACCCGAATTA
* *
91346620 AATCACTACATAATTAAAAACATTACATAAATCTTTG
1 AATCACTACATAATTAAAAATATTACATAAGTCTTTG
91346657 AATCACTACATAATTAAAAATATTACATAAGTCTTTG
1 AATCACTACATAATTAAAAATATTACATAAGTCTTTG
*
91346694 AATCACTACATAATTAAAAATATTACACAAGTC-TTG
1 AATCACTACATAATTAAAAATATTACATAAGTCTTTG
91346730 AAT
1 AAT
91346733 TAAAACATAA
Statistics
Matches: 73, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
36 6 0.08
37 67 0.92
ACGTcount: A:0.48, C:0.15, G:0.04, T:0.33
Consensus pattern (37 bp):
AATCACTACATAATTAAAAATATTACATAAGTCTTTG
Found at i:91346800 original size:24 final size:24
Alignment explanation
Indices: 91346773--91346831 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
91346763 ATTCTCCATT
*
91346773 TATATCCATTTCATCTTTCCAAAA
1 TATATCCATTTCATCTCTCCAAAA
*
91346797 TATATTCATTTCATCTCTCCAAAA
1 TATATCCATTTCATCTCTCCAAAA
*
91346821 TATCTCCATTT
1 TATATCCATTT
91346832 GCATTAAACC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.31, C:0.25, G:0.00, T:0.44
Consensus pattern (24 bp):
TATATCCATTTCATCTCTCCAAAA
Found at i:91349917 original size:16 final size:16
Alignment explanation
Indices: 91349896--91349929 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
91349886 TTTTTTTTCT
*
91349896 TACATTAATTATAATA
1 TACATTAATTACAATA
91349912 TACATTAATTACAATA
1 TACATTAATTACAATA
91349928 TA
1 TA
91349930 TTCAATAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (16 bp):
TACATTAATTACAATA
Found at i:91350850 original size:16 final size:17
Alignment explanation
Indices: 91350829--91350869 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
91350819 GCCTAAGAGA
91350829 AAATTGGGCT-GGATTT
1 AAATTGGGCTGGGATTT
*
91350845 AAATTGGGCTGGGTTTT
1 AAATTGGGCTGGGATTT
91350862 AAATTGGG
1 AAATTGGG
91350870 AGGGAGTAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 10 0.43
17 13 0.57
ACGTcount: A:0.24, C:0.05, G:0.34, T:0.37
Consensus pattern (17 bp):
AAATTGGGCTGGGATTT
Found at i:91352360 original size:7 final size:7
Alignment explanation
Indices: 91352339--91352374 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
91352329 CCTCTTTATA
91352339 TGTTTTT
1 TGTTTTT
*
91352346 TATGTTTT
1 TGT-TTTT
91352354 TGTTTTT
1 TGTTTTT
91352361 TGTTTTT
1 TGTTTTT
91352368 TGTTTTT
1 TGTTTTT
91352375 CCCTTTTTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 20 0.77
8 6 0.23
ACGTcount: A:0.03, C:0.00, G:0.14, T:0.83
Consensus pattern (7 bp):
TGTTTTT
Found at i:91353043 original size:63 final size:62
Alignment explanation
Indices: 91352939--91353146 Score: 211
Period size: 63 Copynumber: 3.3 Consensus size: 62
91352929 GGCCGTATGC
* * * *
91352939 CATGTAACTCACTGTTTAGAATTTAGAGTCACACGGACTAAAGACACGGGCATGTGTCTAGG-
1 CATGTAACTCACTGTTTTG-ATTTAGGGTCACACGGGCTAAAGACACGGGCATGTGTCCAGGT
* * *
91353001 CTGTGTAACTCATTGTTTTGACTTTAGGGTCACACGGGCTAAAGAAACGGGCATGTGTCCAGGT
1 C-ATGTAACTCACTGTTTTGA-TTTAGGGTCACACGGGCTAAAGACACGGGCATGTGTCCAGGT
* * * * * * * * *
91353065 CATGTAACTTACTGTTTATGAATTAGGGTCACACGGGCCAGAGACACGAGCGTATGTCCAAGC
1 CATGTAACTCACTGTTT-TGATTTAGGGTCACACGGGCTAAAGACACGGGCATGTGTCCAGGT
* *
91353128 CGTGTAACTTACTGTTTTG
1 CATGTAACTCACTGTTTTG
91353147 GGAATTTGAG
Statistics
Matches: 122, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
62 4 0.03
63 114 0.93
64 4 0.03
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.28
Consensus pattern (62 bp):
CATGTAACTCACTGTTTTGATTTAGGGTCACACGGGCTAAAGACACGGGCATGTGTCCAGGT
Found at i:91353534 original size:2 final size:2
Alignment explanation
Indices: 91353527--91353554 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
91353517 AGTGTTAAGC
91353527 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA
91353555 AATATATATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:91354619 original size:24 final size:24
Alignment explanation
Indices: 91354583--91354742 Score: 126
Period size: 24 Copynumber: 6.7 Consensus size: 24
91354573 GGGTCAACAT
*
91354583 TGGCACTAAGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
91354607 TGGCACTATGTGTGCGGATTTGAA
1 TGGCACTATGTGTGCGGATTTGAA
* *
91354631 TGGCACTATGTGTGCTGATTTGGA
1 TGGCACTATGTGTGCGGATTTGAA
* * ** * * * *
91354655 TGTCAATACATGAGTGAATCTTCAA
1 TGGCACTATGTGTGCGGAT-TTGAA
* *
91354680 -GGCACTATGTGTGCGG-TGTAGCA
1 TGGCACTATGTGTGCGGAT-TTGAA
* * **
91354703 TGGCACTATGTGTGTGAATTTGTT
1 TGGCACTATGTGTGCGGATTTGAA
*
91354727 TAGCACTATGTGTGCG
1 TGGCACTATGTGTGCG
91354743 AAATCGGTTG
Statistics
Matches: 102, Mismatches: 31, Indels: 6
0.73 0.22 0.04
Matches are distributed among these distances:
23 3 0.03
24 95 0.93
25 4 0.04
ACGTcount: A:0.22, C:0.14, G:0.31, T:0.34
Consensus pattern (24 bp):
TGGCACTATGTGTGCGGATTTGAA
Found at i:91368478 original size:42 final size:42
Alignment explanation
Indices: 91368334--91368458 Score: 223
Period size: 42 Copynumber: 3.0 Consensus size: 42
91368324 AAAACACATG
* *
91368334 CCCATGTACTAGGCCGTGTGTCACACACGACTGGGATACACA
1 CCCATGTGCTATGCCGTGTGTCACACACGACTGGGATACACA
91368376 CCCATGTGCTATGCCGTGTGTCACACACGACTGGGATACACA
1 CCCATGTGCTATGCCGTGTGTCACACACGACTGGGATACACA
*
91368418 CCCATGTGCTATGCCGTGTGTCACACACGACTGGGACACAC
1 CCCATGTGCTATGCCGTGTGTCACACACGACTGGGATACAC
91368459 GCCCGTGTCT
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 80 1.00
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.20
Consensus pattern (42 bp):
CCCATGTGCTATGCCGTGTGTCACACACGACTGGGATACACA
Found at i:91369386 original size:27 final size:25
Alignment explanation
Indices: 91369340--91369411 Score: 58
Period size: 25 Copynumber: 2.8 Consensus size: 25
91369330 AATGCTCATA
*
91369340 CGAGCACATA-AACGGTAAGCCCTTTCT
1 CGAGC-CATATAACGG-AAGCCC-ATCT
* *
91369367 CGAGCCATATAACAGGAAGCTCATGT
1 CGAGCCATATAAC-GGAAGCCCATCT
91369393 -GAGCCATATAACGGGAAGC
1 CGAGCCATATAAC-GGAAGC
91369412 TTATCTAAGC
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
25 18 0.46
26 6 0.15
27 13 0.33
28 2 0.05
ACGTcount: A:0.33, C:0.25, G:0.24, T:0.18
Consensus pattern (25 bp):
CGAGCCATATAACGGAAGCCCATCT
Found at i:91369398 original size:25 final size:24
Alignment explanation
Indices: 91369368--91369450 Score: 85
Period size: 25 Copynumber: 3.3 Consensus size: 24
91369358 GCCCTTTCTC
*
91369368 GAGCCATATAACAGGAAGCTCATGT
1 GAGCCATATAAC-GGAAGCTCATAT
* *
91369393 GAGCCATATAACGGGAAGCTTATCT
1 GAGCCATATAAC-GGAAGCTCATAT
* * *
91369418 AAGCTATATAACGAGAAGCTCATAA
1 GAGCCATATAACG-GAAGCTCATAT
91369443 GAGCCATA
1 GAGCCATA
91369451 ATCAGTAAGC
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
24 1 0.02
25 46 0.98
ACGTcount: A:0.39, C:0.19, G:0.22, T:0.20
Consensus pattern (24 bp):
GAGCCATATAACGGAAGCTCATAT
Found at i:91370096 original size:21 final size:21
Alignment explanation
Indices: 91370060--91370101 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
91370050 GAATTTAATA
*
91370060 TCAATTTAATATAATTCATAT
1 TCAATTTAATACAATTCATAT
*
91370081 TCAATTTAATCCAATTCATAT
1 TCAATTTAATACAATTCATAT
91370102 CTTAGGCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.14, G:0.00, T:0.45
Consensus pattern (21 bp):
TCAATTTAATACAATTCATAT
Found at i:91379876 original size:17 final size:17
Alignment explanation
Indices: 91379854--91379889 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
91379844 TTACAACAAT
91379854 TTTTTGGCAGAATAATG
1 TTTTTGGCAGAATAATG
91379871 TTTTTGGCAGAATAATG
1 TTTTTGGCAGAATAATG
91379888 TT
1 TT
91379890 ATCTCTATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.06, G:0.22, T:0.44
Consensus pattern (17 bp):
TTTTTGGCAGAATAATG
Found at i:91380232 original size:9 final size:9
Alignment explanation
Indices: 91380210--91380243 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
91380200 AATAAATGTT
91380210 AATTAATT-
1 AATTAATTA
91380218 AATTAATTA
1 AATTAATTA
*
91380227 AATTAACTA
1 AATTAATTA
91380236 AATTAATT
1 AATTAATT
91380244 TTCTAATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (9 bp):
AATTAATTA
Found at i:91381195 original size:4 final size:4
Alignment explanation
Indices: 91381186--91381244 Score: 118
Period size: 4 Copynumber: 14.8 Consensus size: 4
91381176 CTAAACAACA
91381186 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
91381234 TATG TATG TAT
1 TATG TATG TAT
91381245 TTATTATTTG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 55 1.00
ACGTcount: A:0.25, C:0.00, G:0.24, T:0.51
Consensus pattern (4 bp):
TATG
Found at i:91381302 original size:12 final size:12
Alignment explanation
Indices: 91381280--91381344 Score: 53
Period size: 12 Copynumber: 5.4 Consensus size: 12
91381270 ATTATTTATT
91381280 AACATTGTTCGTG
1 AACA-TGTTCGTG
91381293 AACATGTTCGAT-
1 AACATGTTCG-TG
* * *
91381305 TATATGTTCTTG
1 AACATGTTCGTG
*
91381317 AACATGTTCGTT
1 AACATGTTCGTG
*
91381329 TA-ATGTTCGTG
1 AACATGTTCGTG
91381340 AACAT
1 AACAT
91381345 ATTCAATTAA
Statistics
Matches: 39, Mismatches: 10, Indels: 7
0.70 0.18 0.12
Matches are distributed among these distances:
11 10 0.26
12 24 0.62
13 5 0.13
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (12 bp):
AACATGTTCGTG
Found at i:91381312 original size:24 final size:23
Alignment explanation
Indices: 91381285--91381372 Score: 97
Period size: 23 Copynumber: 3.8 Consensus size: 23
91381275 TTATTAACAT
91381285 TGTTCGTGAACATGTTCGATTATA
1 TGTTCGTGAACATGTTCGATTA-A
* *
91381309 TGTTCTTGAACATGTTCGTTTAA
1 TGTTCGTGAACATGTTCGATTAA
* *
91381332 TGTTCGTGAACATATTCAATTAA
1 TGTTCGTGAACATGTTCGATTAA
**
91381355 -GTTAAATGAACATGTTCG
1 TGTT-CGTGAACATGTTCG
91381373 TGAACATTAA
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
22 3 0.06
23 30 0.57
24 20 0.38
ACGTcount: A:0.28, C:0.12, G:0.18, T:0.41
Consensus pattern (23 bp):
TGTTCGTGAACATGTTCGATTAA
Found at i:91382892 original size:17 final size:17
Alignment explanation
Indices: 91382872--91382905 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
91382862 AGATTTAGAT
91382872 TTAAAAATTTTAATTAA
1 TTAAAAATTTTAATTAA
**
91382889 TTAAATTTTTTAATTAA
1 TTAAAAATTTTAATTAA
91382906 AAATCTATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
TTAAAAATTTTAATTAA
Found at i:91389194 original size:17 final size:17
Alignment explanation
Indices: 91389152--91389195 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
91389142 GTCGGAATAA
91389152 TTTTTAAAAAAATTATT
1 TTTTTAAAAAAATTATT
****
91389169 TGAACAAAAAAATTATT
1 TTTTTAAAAAAATTATT
91389186 TTTTTAAAAA
1 TTTTTAAAAA
91389196 TAAATAAAAT
Statistics
Matches: 19, Mismatches: 8, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (17 bp):
TTTTTAAAAAAATTATT
Found at i:91390616 original size:16 final size:15
Alignment explanation
Indices: 91390597--91390660 Score: 53
Period size: 16 Copynumber: 4.1 Consensus size: 15
91390587 TAATATATTA
91390597 TATTATATTAAAAAT
1 TATTATATTAAAAAT
91390612 GTATTAT-TTATAAAAT
1 -TATTATATTA-AAAAT
91390628 T-TTATATATAAAATAT
1 TATTATAT-TAAAA-AT
*
91390644 TATTTTA-TAAATAAT
1 TATTATATTAAA-AAT
91390659 TA
1 TA
91390661 AAATTTACTA
Statistics
Matches: 41, Mismatches: 1, Indels: 13
0.75 0.02 0.24
Matches are distributed among these distances:
14 4 0.10
15 16 0.39
16 17 0.41
17 4 0.10
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (15 bp):
TATTATATTAAAAAT
Found at i:91390632 original size:14 final size:14
Alignment explanation
Indices: 91390613--91390654 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
91390603 ATTAAAAATG
91390613 TATTATTTATAAAA
1 TATTATTTATAAAA
* *
91390627 TTTTATATATAAAA
1 TATTATTTATAAAA
91390641 TATTATTTTATAAA
1 TATTA-TTTATAAA
91390655 TAATTAAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
14 16 0.70
15 7 0.30
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TATTATTTATAAAA
Found at i:91391330 original size:35 final size:35
Alignment explanation
Indices: 91391284--91391354 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
91391274 TTTTTTCTTT
* *
91391284 TTATTCTGTCACGGTTGGAGTCGTGGACACGACGC
1 TTATTCTGTCACGGCTAGAGTCGTGGACACGACGC
*
91391319 TTATTCTGTCACGGCTAGAGTCGTGGGCACGACGC
1 TTATTCTGTCACGGCTAGAGTCGTGGACACGACGC
91391354 T
1 T
91391355 GGGCACGACG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.17, C:0.24, G:0.31, T:0.28
Consensus pattern (35 bp):
TTATTCTGTCACGGCTAGAGTCGTGGACACGACGC
Found at i:91393132 original size:26 final size:26
Alignment explanation
Indices: 91393103--91393155 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
91393093 TGATTTTGAG
91393103 AAAGAGCAATCACGAATTACATGGAT
1 AAAGAGCAATCACGAATTACATGGAT
91393129 AAAGAGCAATCACGAATTACATGGAT
1 AAAGAGCAATCACGAATTACATGGAT
91393155 A
1 A
91393156 CTAGATTCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.19
Consensus pattern (26 bp):
AAAGAGCAATCACGAATTACATGGAT
Found at i:91399528 original size:16 final size:16
Alignment explanation
Indices: 91399503--91399535 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
91399493 TTATTTTTAT
*
91399503 TTATTCATATAATAAA
1 TTATTAATATAATAAA
91399519 TTATTAATATAATAAA
1 TTATTAATATAATAAA
91399535 T
1 T
91399536 ATAATTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
TTATTAATATAATAAA
Found at i:91399544 original size:22 final size:22
Alignment explanation
Indices: 91399514--91399556 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
91399504 TATTCATATA
91399514 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
91399536 ATAATTTATTATTTTAATAAA
1 ATAAATTATTAATATAATAAA
91399557 CTATTAATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:91399661 original size:15 final size:15
Alignment explanation
Indices: 91399641--91399697 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
91399631 ATTCAATATT
91399641 AATATTTTAATAATA
1 AATATTTTAATAATA
*
91399656 AATATTTATTACAATTATA
1 AATA-TT-TT--AATAATA
*
91399675 AATATATTAATAATA
1 AATATTTTAATAATA
*
91399690 AATGTTTT
1 AATATTTT
91399698 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 16 0.48
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:91400868 original size:105 final size:105
Alignment explanation
Indices: 91400686--91400897 Score: 406
Period size: 105 Copynumber: 2.0 Consensus size: 105
91400676 TAAAGTTAAA
*
91400686 TATGCTCATATTTCATATTCATTAGCATCACACCTCATATCTTTTAAGTTAACATCACCAGAAAC
1 TATGCTCATATTTCATATTCATTAGCATCACACCTCATACCTTTTAAGTTAACATCACCAGAAAC
*
91400751 CTAGAAACTTCTACTAAAAACTTCATAATATGATGATACC
66 CTAGAAACTTCTAATAAAAACTTCATAATATGATGATACC
91400791 TATGCTCATATTTCATATTCATTAGCATCACACCTCATACCTTTTAAGTTAACATCACCAGAAAC
1 TATGCTCATATTTCATATTCATTAGCATCACACCTCATACCTTTTAAGTTAACATCACCAGAAAC
91400856 CTAGAAACTTCTAATAAAAACTTCATAATATGATGATACC
66 CTAGAAACTTCTAATAAAAACTTCATAATATGATGATACC
91400896 TA
1 TA
91400898 CTAGTTACAG
Statistics
Matches: 105, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
105 105 1.00
ACGTcount: A:0.38, C:0.23, G:0.07, T:0.33
Consensus pattern (105 bp):
TATGCTCATATTTCATATTCATTAGCATCACACCTCATACCTTTTAAGTTAACATCACCAGAAAC
CTAGAAACTTCTAATAAAAACTTCATAATATGATGATACC
Found at i:91401394 original size:35 final size:35
Alignment explanation
Indices: 91401355--91401425 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
91401345 TGACCTAAAT
*
91401355 TCTAAGAGATTGTTTGCAAGTCAAGTTAAACAAAA
1 TCTAAGAGATTGCTTGCAAGTCAAGTTAAACAAAA
91401390 TCTAAGAGATTGCTTGCAAGTCAAGTTAAACAAAA
1 TCTAAGAGATTGCTTGCAAGTCAAGTTAAACAAAA
91401425 T
1 T
91401426 ATATTTTCTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (35 bp):
TCTAAGAGATTGCTTGCAAGTCAAGTTAAACAAAA
Found at i:91410120 original size:21 final size:21
Alignment explanation
Indices: 91410081--91410120 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
91410071 GGCCACATAG
*
91410081 AAAACATAAATTTAAAAATGA
1 AAAACATAAATATAAAAATGA
* *
91410102 AAAATATAAATATATAAAT
1 AAAACATAAATATAAAAAT
91410121 TGTTTACCAC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.28
Consensus pattern (21 bp):
AAAACATAAATATAAAAATGA
Found at i:91410847 original size:148 final size:148
Alignment explanation
Indices: 91410658--91410956 Score: 589
Period size: 148 Copynumber: 2.0 Consensus size: 148
91410648 ACTAAATTAG
91410658 ATACCTATACTATAGAACTTATTAGAACTTCTAACATCAATGAGACCTAATTTTGACTAATAAAT
1 ATACCTATACTATAGAACTTATTAGAACTTCTAACATCAATGAGACCTAATTTTGACTAATAAAT
91410723 TAGACAGAAAATATTCTTTTTAACTTTTATGACGAGATTTTAACTTGAATAATAGTTACTAGAAA
66 TAGACAGAAAATATTCTTTTTAACTTTTATGACGAGATTTTAACTTGAATAATAGTTACTAGAAA
91410788 ATATCACATTAATAGTAA
131 ATATCACATTAATAGTAA
91410806 ATACCTATACTATAGAACTTATTAGAACTTCTAACATCAATGAGACCTAATTTTGACTAATAAAT
1 ATACCTATACTATAGAACTTATTAGAACTTCTAACATCAATGAGACCTAATTTTGACTAATAAAT
*
91410871 TAGATAGAAAATATTCTTTTTAACTTTTATGACGAGATTTTAACTTGAATAATAGTTACTAGAAA
66 TAGACAGAAAATATTCTTTTTAACTTTTATGACGAGATTTTAACTTGAATAATAGTTACTAGAAA
91410936 ATATCACATTAATAGTAA
131 ATATCACATTAATAGTAA
91410954 ATA
1 ATA
91410957 ATTATATAAT
Statistics
Matches: 150, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
148 150 1.00
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.36
Consensus pattern (148 bp):
ATACCTATACTATAGAACTTATTAGAACTTCTAACATCAATGAGACCTAATTTTGACTAATAAAT
TAGACAGAAAATATTCTTTTTAACTTTTATGACGAGATTTTAACTTGAATAATAGTTACTAGAAA
ATATCACATTAATAGTAA
Found at i:91412064 original size:31 final size:31
Alignment explanation
Indices: 91412026--91412087 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
91412016 TCTTTTTTTT
** *
91412026 GAGTTAAATTTAATTCTCAACCTTTTAAAAA
1 GAGTTAAATTTAACCCCCAACCTTTTAAAAA
*
91412057 GAGTTAAATTTAACCCCCAATCTTTTAAAAA
1 GAGTTAAATTTAACCCCCAACCTTTTAAAAA
91412088 AGAGCCAAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.42, C:0.16, G:0.06, T:0.35
Consensus pattern (31 bp):
GAGTTAAATTTAACCCCCAACCTTTTAAAAA
Found at i:91419879 original size:127 final size:130
Alignment explanation
Indices: 91419714--91420149 Score: 337
Period size: 132 Copynumber: 3.4 Consensus size: 130
91419704 TCCAACGAGA
* * * * * * * **
91419714 AAATCGAAACCCAGCAC-AGTAGGGCACGACTCCTCGAATTTCTAGATATC-AGACATTGTC-TT
1 AAATCGCAACCCAGCACGA-TAGGGCACGATTCCCCGAATTGCCAAACATCGA-ACATTACCTTT
* ** * * *
91419776 ATTTT-AGA-ATTTAGAGAGTATGAGTGAAATTCTAAAGGAATCTTCGATCATTTTGGACAAACA
64 ATTTTAAGAGATTTAGAAAACATGAGTGAAATTCAAAAGGAACCTTCGATCATTTTGAACAAACA
*
91419839 GG
129 AG
* * *
91419841 AAATCGCAACCCAGCACGATAGGGCACAATTCCCCGAATTGCCAAACATCGAATATTACCTTTGT
1 AAATCGCAACCCAGCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTTAT
* * *
91419906 TTTGAAGAGTTTTTAGAAAACATGAGTGAAATTCAAAAGGGACCTTCGATTATTTTGAACAAACA
66 TTT-AAGAG-ATTTAGAAAACATGAGTGAAATTCAAAAGGAACCTTCGATCATTTTGAACAAACA
91419971 AG
129 AG
* * * ** **
91419973 AAATTGCAACCCAGCACGATAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCGCCTTCGT
1 AAATCGCAACCCAGCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTTAT
* * * *** * ** *
91420038 TTTAA-AGGATTTGTAGAAGACATAAGCGAAATTTTGAAGGGATATTCGATTATTTTGAACAAAC
66 TTTAAGA-GA-TT-TAGAAAACATGAGTGAAATTCAAAAGGAACCTTCGATCATTTTGAACAAAC
**
91420102 GGG
128 AAG
** * * * *
91420105 AAATTAC-ACCCAGCACGTTAGCGCACAATTCCGCGAATTGCCAAA
1 AAATCGCAACCCAGCACGATAGGGCACGATTCCCCGAATTGCCAAA
91420150 TATCAAATCT
Statistics
Matches: 254, Mismatches: 45, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
127 45 0.18
128 8 0.03
130 4 0.02
131 40 0.16
132 157 0.62
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (130 bp):
AAATCGCAACCCAGCACGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTACCTTTAT
TTTAAGAGATTTAGAAAACATGAGTGAAATTCAAAAGGAACCTTCGATCATTTTGAACAAACAAG
Found at i:91419954 original size:132 final size:132
Alignment explanation
Indices: 91419795--91420183 Score: 494
Period size: 132 Copynumber: 3.0 Consensus size: 132
91419785 TTTAGAGAGT
* * * *
91419795 ATGAGTGAAATTCTAAAGGAATCTTCGATCATTTTGGACAAACAGGAAATCGCAACCCAGCACGA
1 ATGAGTGAAATTCTAAAGGGATCTTCGATTATTTTGAACAAACAGGAAATTGCAACCCAGCACGA
* * * * *
91419860 TAGGGCACAATTCCCCGAATTGCCAAACATCGAATATTACCTTTGTTTTGAAGAGTTTTTAGAAA
66 TAGGGCACAATTCCGCGAATTGCCAAATATCGAATATCACCTTCGTTTTAAAGAGTTTTTAGAAA
91419925 AC
131 AC
* * *
91419927 ATGAGTGAAATTCAAAAGGGACCTTCGATTATTTTGAACAAACAAGAAATTGCAACCCAGCACGA
1 ATGAGTGAAATTCTAAAGGGATCTTCGATTATTTTGAACAAACAGGAAATTGCAACCCAGCACGA
* * * *
91419992 TAGGGCACGATTCCGCGAATTGCCAAATATCGAACATCGCCTTCGTTTTAAAG-GATTTGTAGAA
66 TAGGGCACAATTCCGCGAATTGCCAAATATCGAATATCACCTTCGTTTTAAAGAG-TTTTTAGAA
*
91420056 GAC
130 AAC
* * * * * * * *
91420059 ATAAGCGAAATTTTGAAGGGATATTCGATTATTTTGAACAAACGGGAAATTAC-ACCCAGCACGT
1 ATGAGTGAAATTCTAAAGGGATCTTCGATTATTTTGAACAAACAGGAAATTGCAACCCAGCACGA
* * * *
91420123 TAGCGCACAATTCCGCGAATTGCCAAATATCAAATCTCACCTTCGTTTTAAAGAATTTTTA
66 TAGGGCACAATTCCGCGAATTGCCAAATATCGAATATCACCTTCGTTTTAAAGAGTTTTTA
91420184 AACGAATAAT
Statistics
Matches: 219, Mismatches: 36, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
131 63 0.29
132 156 0.71
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (132 bp):
ATGAGTGAAATTCTAAAGGGATCTTCGATTATTTTGAACAAACAGGAAATTGCAACCCAGCACGA
TAGGGCACAATTCCGCGAATTGCCAAATATCGAATATCACCTTCGTTTTAAAGAGTTTTTAGAAA
AC
Found at i:91423147 original size:133 final size:133
Alignment explanation
Indices: 91422917--91423312 Score: 558
Period size: 133 Copynumber: 3.0 Consensus size: 133
91422907 CGAGATCCGT
* * * *
91422917 AATCTTCAGGCTATTCCACTACAACTTTAGTGAGATAGGATGGTGGCTTAAATCTGCTTCACTGC
1 AATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGC
* * * *
91422982 AACTTCAGGAAGACAAGATTTGTCGTTTTCGATCTGCTCCACTGCAACTTCAGGGGAACAAGATC
66 AACTTCAGGAAGACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGATC
91423047 TAC
131 TAC
**
91423050 AATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTTGCTGC
1 AATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGC
* * * *
91423115 AACTTTAGGAAGCCTAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTTAGGGAAACAAGATC
66 AACTTCAGGAAGACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGATC
91423180 TAC
131 TAC
* * * *
91423183 GATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAAGATGATGGCCTAAATCTGCTTCACTGC
1 AATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGC
* * * * * * * *
91423248 CACTTCAAGAAGACGAGATTCGCCGTCGTCGATTTGCTCCACTGTAACTTCAGAGAGACAAGATC
66 AACTTCAGGAAGACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGATC
91423313 GGTAAAATTC
Statistics
Matches: 232, Mismatches: 31, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
133 232 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (133 bp):
AATCTTCAGCCTACTCCACTACAACTTTAGGGAGCTAGGATGGTGGCTTAAATCTGCTTCACTGC
AACTTCAGGAAGACAAGATTCGCCGTCTTCGATCTGCTCCACTGCAACTTCAGGGAAACAAGATC
TAC
Found at i:91423189 original size:45 final size:43
Alignment explanation
Indices: 91422968--91423215 Score: 110
Period size: 45 Copynumber: 5.6 Consensus size: 43
91422958 GGTGGCTTAA
* * * * *
91422968 ATCTGCTTCACTGCAACTTCA-GGAAGACAAGATTTGTCGTTTTC
1 ATCTGCTCCACTGCAACTTTAGGGAA-ACAAGATCT-ACGTCTTC
* * *
91423012 GATCTGCTCCACTGCAACTTCAGGGGAACAAGATCTACAATCTTC
1 -ATCTGCTCCACTGCAACTTTAGGGAAACAAGATCTAC-GTCTTC
* * * * * * * *
91423057 AGCCTACTCCACTACAACTTTAGGG-AGCTAGGATGGT--GGCTTAA
1 A-TCTGCTCCACTGCAACTTTAGGGAAAC-AAGAT-CTACGTCTT-C
*** * * **
91423101 ATCTGCTTTGCTGCAACTTTA-GGAAGCCTAGATTCGCCGTCTTC
1 ATCTGCTCCACTGCAACTTTAGGGAA-ACAAGA-TCTACGTCTTC
91423145 GATCTGCTCCACTGCAACTTTAGGGAAACAAGATCTACGATCTTC
1 -ATCTGCTCCACTGCAACTTTAGGGAAACAAGATCTACG-TCTTC
* * *
91423190 AGCCTACTCCACTACAACTTTAGGGA
1 A-TCTGCTCCACTGCAACTTTAGGGA
91423216 GCTAAGATGA
Statistics
Matches: 149, Mismatches: 39, Indels: 30
0.68 0.18 0.14
Matches are distributed among these distances:
42 2 0.01
43 20 0.13
44 12 0.08
45 107 0.72
46 8 0.05
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (43 bp):
ATCTGCTCCACTGCAACTTTAGGGAAACAAGATCTACGTCTTC
Found at i:91434946 original size:132 final size:130
Alignment explanation
Indices: 91434780--91435169 Score: 467
Period size: 132 Copynumber: 3.0 Consensus size: 130
91434770 TTTAGAGAGT
* * *
91434780 ATGAGTGAAATTCTAAAGGAATCTTCGATCATTTTGGACAAACAGGAAATCACAACCCAGCACGA
1 ATGAGTGAAATTCTAAAGG-ATCTTCGATTATTTTGAACAAAC-GGAAATTACAACCCAGCACGA
* * * * * * *
91434845 TAGGGTACGATTCCCCAAATTGCCAAACATCGAATATTACCTTTGTTTTGAAGAGTTTTTAGAAA
64 TAGGGCACGATTCCGCGAATTGCCAAATATCAAATATCACCTTTGTTTTAAAGAGTTTTTAGAAA
91434910 AC
129 AC
* *
91434912 ATGAGTGAAATTCAAAAGAGACCTTCGATTATTTTGAACAAACGAGAAATTACAACCCAGCACGA
1 ATGAGTGAAATTCTAAAG-GATCTTCGATTATTTTGAACAAACG-GAAATTACAACCCAGCACGA
* *
91434977 TAGGGCACGATTCCGCGAATTGCCAAATATCAAACATCGCCTTTGTTTTAAAG-GATTTTTAGAA
64 TAGGGCACGATTCCGCGAATTGCCAAATATCAAATATCACCTTTGTTTTAAAGAG-TTTTTAGAA
*
91435041 GAC
128 AAC
* * * * * * *
91435044 ATAAGCGGAATTTTGAAGGGATATTCGATTATTTTGAACAAACGGGAAATTACAACCCAGCACGT
1 ATGAGTGAAATTCT-AAAGGATCTTCGATTATTTTGAACAAAC-GGAAATTACAACCCAGCACGA
* * * * *
91435109 TAGCGCACAATTCCGCGAATTGCCAAATATCAAATCTCACCTTCGTTTTAAAGAATTTTTA
64 TAGGGCACGATTCCGCGAATTGCCAAATATCAAATATCACCTTTGTTTTAAAGAGTTTTTA
91435170 AATGAATAAT
Statistics
Matches: 221, Mismatches: 31, Indels: 12
0.84 0.12 0.05
Matches are distributed among these distances:
131 2 0.01
132 214 0.97
133 5 0.02
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.27
Consensus pattern (130 bp):
ATGAGTGAAATTCTAAAGGATCTTCGATTATTTTGAACAAACGGAAATTACAACCCAGCACGATA
GGGCACGATTCCGCGAATTGCCAAATATCAAATATCACCTTTGTTTTAAAGAGTTTTTAGAAAAC
Found at i:91442581 original size:31 final size:31
Alignment explanation
Indices: 91442506--91442571 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
91442496 TTACAAAATG
* * *
91442506 GTCATTGAATTATTTAAAAGTTTTCATTTAA
1 GTCACTGAACTATTCAAAAGTTTTCATTTAA
*
91442537 GTCACTGAACTATTCAAAAGTTTTTATTTAA
1 GTCACTGAACTATTCAAAAGTTTTCATTTAA
91442568 GTCA
1 GTCA
91442572 TTAGGCTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.44
Consensus pattern (31 bp):
GTCACTGAACTATTCAAAAGTTTTCATTTAA
Found at i:91443572 original size:16 final size:16
Alignment explanation
Indices: 91443541--91443602 Score: 54
Period size: 16 Copynumber: 3.8 Consensus size: 16
91443531 GGTAGAGTGA
**
91443541 AAAGAAAATTGGAAGG
1 AAAGAAAATTAAAAGG
91443557 AAAGAAAATTAAAAGG
1 AAAGAAAATTAAAAGG
** *
91443573 GTAGAAAACTAAAAGG
1 AAAGAAAATTAAAAGG
91443589 ATAA-AAAATATAAA
1 A-AAGAAAAT-TAAA
91443603 TTTTCTTTCC
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
16 31 0.86
17 5 0.14
ACGTcount: A:0.65, C:0.02, G:0.19, T:0.15
Consensus pattern (16 bp):
AAAGAAAATTAAAAGG
Found at i:91445301 original size:24 final size:22
Alignment explanation
Indices: 91445258--91445312 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
91445248 TTGGATATTG
* *
91445258 TAATTTTTTTAATTTGAATTTA
1 TAATTTTTTGAATTTCAATTTA
91445280 TAATTTTTTGATATATTCAATTTA
1 TAATTTTTTGA-AT-TTCAATTTA
91445304 TATATTTTT
1 TA-ATTTTT
91445313 ATTATGTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 10 0.36
23 2 0.07
24 10 0.36
25 6 0.21
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.64
Consensus pattern (22 bp):
TAATTTTTTGAATTTCAATTTA
Found at i:91456180 original size:60 final size:59
Alignment explanation
Indices: 91456111--91456298 Score: 191
Period size: 60 Copynumber: 3.2 Consensus size: 59
91456101 GGTCGTCACC
* *
91456111 ATCCATTTTCATTA-TTCGATGGTCGTCACCATCTTTTTCCATAATTTAATAGCCGAAGCT
1 ATCCCTTTTCA-TAGTTCGATGGTCGTCACCATCCTTTT-CATAATTTAATAGCCGAAGCT
* * * ** * * * *
91456171 ATCCCTTTTCGTAGTTCGATAGTTGAAACCATCCCTTTTCATAGTTTAATAGTCGAAACC
1 ATCCCTTTTCATAGTTCGATGGTCGTCACCAT-CCTTTTCATAATTTAATAGCCGAAGCT
* * * *
91456231 ATCCCTTGTCATAGTTCGATGATCGTCACCATCCTTTTCATAA-TCAATAGCCAAAGCT
1 ATCCCTTTTCATAGTTCGATGGTCGTCACCATCCTTTTCATAATTTAATAGCCGAAGCT
*
91456289 ATCTCTTTTC
1 ATCCCTTTTC
91456299 CATTTGTCAA
Statistics
Matches: 100, Mismatches: 26, Indels: 6
0.76 0.20 0.05
Matches are distributed among these distances:
58 18 0.18
59 12 0.12
60 65 0.65
61 5 0.05
ACGTcount: A:0.26, C:0.25, G:0.12, T:0.38
Consensus pattern (59 bp):
ATCCCTTTTCATAGTTCGATGGTCGTCACCATCCTTTTCATAATTTAATAGCCGAAGCT
Found at i:91456205 original size:30 final size:30
Alignment explanation
Indices: 91456022--91456272 Score: 118
Period size: 30 Copynumber: 8.4 Consensus size: 30
91456012 GGTTGACCCT
* * * ***
91456022 TCCCTTTTCGTAATTCGATAATCGAAGTTA
1 TCCCTTTTCATAGTTCGATAGTCGAAACCA
* * * **
91456052 TCCCTTTTCATAATTCGACAG-CCAAAGCTG
1 TCCCTTTTCATAGTTCGATAGTCGAAA-CCA
* * **
91456082 TCCCTTTTCATA-ATCTGATGGTCGTCACCA
1 TCCCTTTTCATAGTTC-GATAGTCGAAACCA
* * **
91456112 TCCATTTTCATTA-TTCGATGGTCGTCACCA
1 TCCCTTTTCA-TAGTTCGATAGTCGAAACCA
* * ** * * *
91456142 T-CTTTTTCCATAATTTAATAGCCGAAGCTA
1 TCCCTTTT-CATAGTTCGATAGTCGAAACCA
* *
91456172 TCCCTTTTCGTAGTTCGATAGTTGAAACCA
1 TCCCTTTTCATAGTTCGATAGTCGAAACCA
**
91456202 TCCCTTTTCATAGTTTAATAGTCGAAACCA
1 TCCCTTTTCATAGTTCGATAGTCGAAACCA
* **
91456232 TCCCTTGTCATAGTTCGAT-GATCGTCACCA
1 TCCCTTTTCATAGTTCGATAG-TCGAAACCA
91456262 T-CCTTTTCATA
1 TCCCTTTTCATA
91456273 ATCAATAGCC
Statistics
Matches: 168, Mismatches: 45, Indels: 17
0.73 0.20 0.07
Matches are distributed among these distances:
29 22 0.13
30 135 0.80
31 11 0.07
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.37
Consensus pattern (30 bp):
TCCCTTTTCATAGTTCGATAGTCGAAACCA
Found at i:91458865 original size:21 final size:21
Alignment explanation
Indices: 91458815--91458867 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
91458805 CAAATTAACC
*
91458815 TTTACATATTCATTATCCAAA
1 TTTACATTTTCATTATCCAAA
*
91458836 TTTATCATTTATCATTATCC-AT
1 TTTA-CATTT-TCATTATCCAAA
91458858 TTTACATTTT
1 TTTACATTTT
91458868 AAAAAAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
20 1 0.04
21 9 0.32
22 9 0.32
23 9 0.32
ACGTcount: A:0.30, C:0.17, G:0.00, T:0.53
Consensus pattern (21 bp):
TTTACATTTTCATTATCCAAA
Found at i:91461417 original size:21 final size:20
Alignment explanation
Indices: 91461391--91461450 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 20
91461381 TATAGTGTTT
*
91461391 ATTATAAATTATTTATAGTAA
1 ATTATAAACTATTTATA-TAA
* * *
91461412 ATTATATAGTATTTATTATTA
1 ATTATAAACTATTTA-TATAA
*
91461433 ATTTTAAACTATTTATAT
1 ATTATAAACTATTTATAT
91461451 TTAATCAATG
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
20 3 0.09
21 27 0.84
22 2 0.06
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (20 bp):
ATTATAAACTATTTATATAA
Found at i:91462326 original size:13 final size:13
Alignment explanation
Indices: 91462308--91462370 Score: 83
Period size: 13 Copynumber: 4.9 Consensus size: 13
91462298 AGTTCTTCAT
91462308 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
91462321 TGCTTTTAAAAAA
1 TGCTTTTGAAAAG
91462334 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
91462347 TACTTTTGAGAAG
1 TGCTTTTGAAAAG
91462360 TGC-TTTGAAAA
1 TGCTTTTGAAAA
91462371 AATTTAAGTA
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
12 7 0.17
13 35 0.83
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:91469407 original size:13 final size:12
Alignment explanation
Indices: 91469389--91469429 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 12
91469379 TAATTTTAGA
91469389 TTTTTTATAACTT
1 TTTTTTATAA-TT
91469402 TTTTTTATAAATT
1 TTTTTTAT-AATT
*
91469415 TTGTTTATAATT
1 TTTTTTATAATT
91469427 TTT
1 TTT
91469430 ATGATTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 6 0.24
13 17 0.68
14 2 0.08
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (12 bp):
TTTTTTATAATT
Found at i:91470363 original size:38 final size:39
Alignment explanation
Indices: 91470312--91470394 Score: 150
Period size: 38 Copynumber: 2.1 Consensus size: 39
91470302 TAGAAGGATA
91470312 GTTTGTGGTATATACGATCTGGTTTAGATTGGTAA-TAT
1 GTTTGTGGTATATACGATCTGGTTTAGATTGGTAATTAT
91470350 GTTTGTGGTATATACGATCTGGTTTAGATTGGTAATTAT
1 GTTTGTGGTATATACGATCTGGTTTAGATTGGTAATTAT
91470389 GATTTG
1 G-TTTG
91470395 GATTTGAAGA
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
38 35 0.81
39 4 0.09
40 4 0.09
ACGTcount: A:0.23, C:0.05, G:0.27, T:0.46
Consensus pattern (39 bp):
GTTTGTGGTATATACGATCTGGTTTAGATTGGTAATTAT
Found at i:91479821 original size:43 final size:43
Alignment explanation
Indices: 91479755--91479883 Score: 163
Period size: 43 Copynumber: 3.0 Consensus size: 43
91479745 GCATTTTTAT
* * * *
91479755 AGAACATGACCTTTAGCGACGCTTTCCCCACAAACACTGCTAA
1 AGAACAAGACCTTTAGCGACGCTTTTCCCACAAACGCCGCTAA
* * *
91479798 AGAACAAGACCTTTAGCGGCGCTTTTCTCACAAACGCCACT-A
1 AGAACAAGACCTTTAGCGACGCTTTTCCCACAAACGCCGCTAA
*
91479840 AGAACATA-ATCTTTAGCGACGCTTTTCCCACAAACGCCGCTAA
1 AGAACA-AGACCTTTAGCGACGCTTTTCCCACAAACGCCGCTAA
91479883 A
1 A
91479884 AACCATATCA
Statistics
Matches: 73, Mismatches: 11, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
42 36 0.49
43 37 0.51
ACGTcount: A:0.33, C:0.31, G:0.15, T:0.22
Consensus pattern (43 bp):
AGAACAAGACCTTTAGCGACGCTTTTCCCACAAACGCCGCTAA
Found at i:91479856 original size:42 final size:42
Alignment explanation
Indices: 91479755--91479882 Score: 159
Period size: 42 Copynumber: 3.0 Consensus size: 42
91479745 GCATTTTTAT
* * * *
91479755 AGAACATGACCTTTAGCGACGCTTTCCCCACAAACACTGCTAA
1 AGAACATAACCTTTAGCGACGCTTTTCCCACAAACGCCGCT-A
* * *
91479798 AGAACA-AGACCTTTAGCGGCGCTTTTCTCACAAACGCCACTA
1 AGAACATA-ACCTTTAGCGACGCTTTTCCCACAAACGCCGCTA
*
91479840 AGAACATAATCTTTAGCGACGCTTTTCCCACAAACGCCGCTA
1 AGAACATAACCTTTAGCGACGCTTTTCCCACAAACGCCGCTA
91479882 A
1 A
91479883 AAACCATATC
Statistics
Matches: 72, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
42 38 0.53
43 34 0.47
ACGTcount: A:0.32, C:0.31, G:0.15, T:0.22
Consensus pattern (42 bp):
AGAACATAACCTTTAGCGACGCTTTTCCCACAAACGCCGCTA
Found at i:91482549 original size:94 final size:89
Alignment explanation
Indices: 91482387--91482738 Score: 311
Period size: 94 Copynumber: 3.8 Consensus size: 89
91482377 TGCGCCAGTA
* * * * *
91482387 TAAGACATGTCTGGGACATGCTTCGGCTACATTATGAGAGCCAGTGTAAGACCATTTCTGGGATA
1 TAAGACATGTCTGGGACATGCATCAGCTATA-TATGAGAGCCAGTGTAAGACCATGTCTGGGACA
91482452 TGGCATCAGCATCCAAACGAGGGCTAGTG
65 TGGCATCAGC-T--AAA-GAGGGCTAGTG
* * *
91482481 TAAGACATGTTTGGGACATGCATCAGCTATACTATGATAGCCAGTGTAAGACCATGTCTGCGACA
1 TAAGACATGTCTGGGACATGCATCAGCTATA-TATGAGAGCCAGTGTAAGACCATGTCTGGGACA
* * *
91482546 TGGCATCGGCGTAGAGATGAGTGCCAGTG
65 TGGCATCAGC-TA-A-A-GAGGGCTAGTG
* * *
91482575 TAAGACATGTCTGGGACATGCATCGGCCT-TGATA-GAGACAGCCAGTGTAAGA-CGTGTCTAGG
1 TAAGACATGTCTGGGACATGCATCAG-CTAT-ATATGAG--AGCCAGTGTAAGACCATGTCTGGG
**
91482637 ACA-CACATCAGCT-AAGAGTTGTGCTAGTG
62 ACATGGCATCAGCTAAAGAG--G-GCTAGTG
* *
91482666 TAAGACATGTTTGGGACATGCATCAGC-ACGCGTATATAAGAGCCAGTGTAAGACCATGTCTGGG
1 TAAGACATGTCTGGGACATGCATCAGCTA----TATATGAGAGCCAGTGTAAGACCATGTCTGGG
91482730 ACATGGCAT
62 ACATGGCAT
91482739 TGGCAATATA
Statistics
Matches: 209, Mismatches: 32, Indels: 34
0.76 0.12 0.12
Matches are distributed among these distances:
88 3 0.01
89 1 0.00
90 2 0.01
91 30 0.14
92 15 0.07
93 23 0.11
94 119 0.57
95 16 0.08
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (89 bp):
TAAGACATGTCTGGGACATGCATCAGCTATATATGAGAGCCAGTGTAAGACCATGTCTGGGACAT
GGCATCAGCTAAAGAGGGCTAGTG
Found at i:91482586 original size:47 final size:46
Alignment explanation
Indices: 91482380--91482734 Score: 206
Period size: 47 Copynumber: 7.6 Consensus size: 46
91482370 TGATTTGTGC
* * * *
91482380 GCCAGTATAAGACATGTCTGGGACATGCTTCGGCTACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACACTATGAGT
* * * * * * *
91482426 GCCAGTGTAAGACCATTTCTGGGATATGGCATCAGCATCCA-AACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TACACTATGAGT
* * * *
91482474 GCTAGTGTAAGACATGTTTGGGACATGCATCAGCTATACTATGA-T
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACACTATGAGT
* * *
91482519 AGCCAGTGTAAGACCATGTCTGCGACATGGCATCGGCGTAGA-GATGAGT
1 -GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TACACTATGAGT
** *
91482568 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGA-TA-GAGACA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTACACTATGAG--T
* * ** * * *
91482615 GCCAGTGTAAGACGTGTCTAGGACACACATCAGCTA-A-GA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACACTATG-AGT
* * * * * *
91482659 GCTAGTGTAAGACATGTTTGGGACATGCATCAGC-ACGCGTATATAAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACAC---TATGAGT
91482707 GCCAGTGTAAGACCATGTCTGGGACATG
1 GCCAGTGTAAGA-CATGTCTGGGACATG
91482735 GCATTGGCAA
Statistics
Matches: 239, Mismatches: 50, Indels: 37
0.73 0.15 0.11
Matches are distributed among these distances:
43 1 0.00
44 28 0.12
45 8 0.03
46 47 0.20
47 77 0.32
48 57 0.24
49 21 0.09
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACACTATGAGT
Found at i:91483465 original size:43 final size:43
Alignment explanation
Indices: 91483418--91483526 Score: 193
Period size: 43 Copynumber: 2.5 Consensus size: 43
91483408 TAAGACACAC
*
91483418 GGGCGTGTGTCTAGGCCGTGTGTGACACACTGTTCACACCCAT
1 GGGCGTGTGTCTAGGCCGTGTGTGACACACGGTTCACACCCAT
91483461 GGGCGTGTGTCTAGGCCGTGTGTGACACACGGTTCACACCCAT
1 GGGCGTGTGTCTAGGCCGTGTGTGACACACGGTTCACACCCAT
91483504 GGGCGTGTGT-TATGGCCGTGTGT
1 GGGCGTGTGTCTA-GGCCGTGTGT
91483527 CCCCTGCACT
Statistics
Matches: 64, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
42 2 0.03
43 62 0.97
ACGTcount: A:0.14, C:0.25, G:0.35, T:0.27
Consensus pattern (43 bp):
GGGCGTGTGTCTAGGCCGTGTGTGACACACGGTTCACACCCAT
Found at i:91486550 original size:224 final size:225
Alignment explanation
Indices: 91486159--91486563 Score: 722
Period size: 224 Copynumber: 1.8 Consensus size: 225
91486149 CCATTATTGT
*
91486159 TTATGCATCTTTCCATTGCACTAAATAGCTGCTGGGTTTGGGTGGGAAACAGGAAAAAGTAAACT
1 TTATGCATCTTTCCATTGCACTAAATAACTGCTGGGTTTGGGTGGGAAACAGGAAAAAGTAAACT
*
91486224 ACTGTTACAAGCTCATCCTTGATGTGTCAATAAGACTTCAACCCCAAAATGCATGCAAGAGAAAG
66 ACTGTTACAAGCTCATCCTTGATGTGTCAACAAGACTTCAACCCCAAAATGCATGCAAGAGAAAG
*
91486289 GTGGAAAAGTCTTTACCACCTGAACAACACCTACCTTTTAAGAAAAGTAGATCACAAAAATAGAG
131 GTGGAAAAGTCTTTACCACCTGAACAACACCTACCTTTTAAGAAAAATAGATCACAAAAATAGAG
91486354 CCCGAAAAGAAGTAAAAGGTTTTTCATTAC
196 CCCGAAAAGAAGTAAAAGGTTTTTCATTAC
*
91486384 TTATGCATCTTTCCATTGCACTAAATAACTG-TTGGTTTGGGTGGGAAACAGGAAAAAGTAAACT
1 TTATGCATCTTTCCATTGCACTAAATAACTGCTGGGTTTGGGTGGGAAACAGGAAAAAGTAAACT
91486448 ACTGTTACAAGCTCATCCTTGATGTGTCAACAAGACTTCAACCCCAAAATGCATGCAAGAGAAAG
66 ACTGTTACAAGCTCATCCTTGATGTGTCAACAAGACTTCAACCCCAAAATGCATGCAAGAGAAAG
* ** * *
91486513 GTGGAGAAGTCTTTACCGTCTGAGCAACACCTACCTTTTAATAAAAATAGA
131 GTGGAAAAGTCTTTACCACCTGAACAACACCTACCTTTTAAGAAAAATAGA
91486564 GCCCGAAAAT
Statistics
Matches: 171, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
224 141 0.82
225 30 0.18
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (225 bp):
TTATGCATCTTTCCATTGCACTAAATAACTGCTGGGTTTGGGTGGGAAACAGGAAAAAGTAAACT
ACTGTTACAAGCTCATCCTTGATGTGTCAACAAGACTTCAACCCCAAAATGCATGCAAGAGAAAG
GTGGAAAAGTCTTTACCACCTGAACAACACCTACCTTTTAAGAAAAATAGATCACAAAAATAGAG
CCCGAAAAGAAGTAAAAGGTTTTTCATTAC
Found at i:91495966 original size:138 final size:138
Alignment explanation
Indices: 91495648--91495966 Score: 471
Period size: 138 Copynumber: 2.3 Consensus size: 138
91495638 TTTGACATGA
* * * *
91495648 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTCATTTTC-TGTCATGTTGCCATGGTATCTT
1 TGCCATGGTATCTTTCAACCATGGTCTTA--CA--CA-TTTCATGTCACGTTGCCATGGTATCTT
* * **
91495712 TCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCA
61 TCAACCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
*
91495777 TTTCATATTAGGT
126 TTTCATATCAGGT
**
91495790 TGCCATGGTATCTTTCAACCATGGTCTTATTC-TCTTCATGTCACGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACACAT-TTCATGTCACGTTGCCATGGTATCTTTCAA
91495854 CCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
65 CCATGGTCTTATTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
91495919 ATATCAGGT
130 ATATCAGGT
91495928 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
91495967 ATCAGAGAGC
Statistics
Matches: 161, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
136 1 0.01
137 3 0.02
138 130 0.81
139 1 0.01
142 26 0.16
ACGTcount: A:0.20, C:0.24, G:0.14, T:0.42
Consensus pattern (138 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCACGTTGCCATGGTATCTTTCAAC
CATGGTCTTATTCATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
TATCAGGT
Found at i:91495971 original size:46 final size:46
Alignment explanation
Indices: 91495696--91495970 Score: 444
Period size: 46 Copynumber: 6.0 Consensus size: 46
91495686 TTTCTGTCAT
* *
91495696 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
* *
91495742 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATTAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
*
91495788 GTTGCCATGGTATCTTTCAACCATGGTCTTATTC-TCTTCATGTCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCAT-TTCATATCAC
91495834 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
** *
91495880 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
**
91495926 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCA
91495971 GAGAGCACAC
Statistics
Matches: 216, Mismatches: 11, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
45 1 0.00
46 214 0.99
47 1 0.00
ACGTcount: A:0.21, C:0.24, G:0.15, T:0.41
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
Found at i:91498068 original size:18 final size:18
Alignment explanation
Indices: 91498045--91498080 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
91498035 GAAATCCCAA
91498045 TTTTTCCCTTTTTCCTTC
1 TTTTTCCCTTTTTCCTTC
**
91498063 TTTTTCTTTTTTTCCTTC
1 TTTTTCCCTTTTTCCTTC
91498081 CTTCTTTCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTTTCCCTTTTTCCTTC
Found at i:91498162 original size:13 final size:14
Alignment explanation
Indices: 91498137--91498165 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
91498127 TTTTCTATTC
91498137 TTTTTCTTCTTCTT
1 TTTTTCTTCTTCTT
91498151 TTTTTCTT-TTCTT
1 TTTTTCTTCTTCTT
91498164 TT
1 TT
91498166 ATATATATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTTCTTCTTCTT
Found at i:91498165 original size:11 final size:11
Alignment explanation
Indices: 91498118--91498165 Score: 53
Period size: 11 Copynumber: 4.2 Consensus size: 11
91498108 CGTTTCATCC
91498118 TTTC-TTTCTT
1 TTTCTTTTCTT
*
91498128 TTTCTATTCTT
1 TTTCTTTTCTT
91498139 TTTCTTCTTCTTTT
1 TTTCTT-TTC--TT
91498153 TTTCTTTTCTT
1 TTTCTTTTCTT
91498164 TT
1 TT
91498166 ATATATATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
10 4 0.12
11 14 0.44
12 3 0.09
13 3 0.09
14 8 0.25
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTCTTTTCTT
Found at i:91500593 original size:42 final size:42
Alignment explanation
Indices: 91500546--91500637 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
91500536 TGGCCCTTAG
* ** *
91500546 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
91500588 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
91500630 GCCCATTT
1 GCCCATTT
91500638 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:91500859 original size:26 final size:26
Alignment explanation
Indices: 91500792--91500956 Score: 260
Period size: 26 Copynumber: 6.4 Consensus size: 26
91500782 AATTGGGGTA
**
91500792 AAGCCCTTTTCGGTAAACTGGGGCA-
1 AAGCCCTTTTCAATAAACTGGGGCAT
*
91500817 AAGCCCTTTTCAATAAACTGGGGCAC
1 AAGCCCTTTTCAATAAACTGGGGCAT
* **
91500843 AATCCCTTTTCGGTAAACTGGGGCAT
1 AAGCCCTTTTCAATAAACTGGGGCAT
91500869 AAGCCCTTTTCAATAAACTGGGGCAT
1 AAGCCCTTTTCAATAAACTGGGGCAT
*
91500895 AAGCCCTTTTCAGTAAACTGGGGCAT
1 AAGCCCTTTTCAATAAACTGGGGCAT
91500921 AAGCCCTTTTCAATAAACTGGGGCAT
1 AAGCCCTTTTCAATAAACTGGGGCAT
91500947 AAGCCCTTTT
1 AAGCCCTTTT
91500957 GCACTTCCTC
Statistics
Matches: 128, Mismatches: 11, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 23 0.18
26 105 0.82
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (26 bp):
AAGCCCTTTTCAATAAACTGGGGCAT
Found at i:91500890 original size:52 final size:52
Alignment explanation
Indices: 91500792--91500956 Score: 296
Period size: 52 Copynumber: 3.2 Consensus size: 52
91500782 AATTGGGGTA
*
91500792 AAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAATAAACTGGGGCAC
1 AAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCAT
*
91500843 AATCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCAT
1 AAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCAT
*
91500895 AAGCCCTTTTCAGTAAACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCAT
1 AAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCAT
91500947 AAGCCCTTTT
1 AAGCCCTTTT
91500957 GCACTTCCTC
Statistics
Matches: 109, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
51 24 0.22
52 85 0.78
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (52 bp):
AAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCAT
Found at i:91504948 original size:81 final size:80
Alignment explanation
Indices: 91504853--91505087 Score: 314
Period size: 81 Copynumber: 2.9 Consensus size: 80
91504843 TTTGTAAATC
*
91504853 AGGGGTATTTTGGTAATTTTACAAATTGAAGGTATTTCGGTAATTTCACAAACCAGTGGTATTTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAAGGTATTTCGGTAATTTTACAAACCAG-GGTATTTT
*
91504918 GGTAATTTTACAAACT
65 AGTAATTTTACAAACT
* *
91504934 AGGGGTATTTTGGTAATTTTACAAATT-AAGGGTATTCCGGTAATTTTACAAACTAGGGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAA-GGTATTTCGGTAATTTTACAAACCA-GGGTATTT
*
91504998 TAGTAATTTTACAGACT
64 TAGTAATTTTACAAACT
* * * **
91505015 A-GGGTATTTTGGTAATTTTACTAATCG-AGGATATTTTGGTAATTTTGTAAACCAAGGGTATTT
1 AGGGGTATTTTGGTAATTTTACAAATTGAAGG-TATTTCGGTAATTTTACAAACC-AGGGTATTT
91505078 TAGTAATTTT
64 TAGTAATTTT
91505088 GTAAATCGAG
Statistics
Matches: 137, Mismatches: 12, Indels: 11
0.86 0.08 0.07
Matches are distributed among these distances:
79 2 0.01
80 61 0.45
81 73 0.53
82 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.41
Consensus pattern (80 bp):
AGGGGTATTTTGGTAATTTTACAAATTGAAGGTATTTCGGTAATTTTACAAACCAGGGTATTTTA
GTAATTTTACAAACT
Found at i:91505088 original size:27 final size:27
Alignment explanation
Indices: 91504742--91505101 Score: 255
Period size: 27 Copynumber: 13.3 Consensus size: 27
91504732 TTTCATCCTA
* * *
91504742 CAAGGGTGTTTTGGTAAATCTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** ** *
91504769 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *** *
91504796 CAATGGTATTTCCATAATTTTTAGAAAGT
1 CAAGGGTATTTTGGTAA-TTTTACAAA-T
* * **
91504825 CAAGGGTATTTCT-ATAACTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
*
91504852 CAGGGGTATTTTGGTAATTTTACAAATT
1 CAAGGGTATTTTGGTAATTTTACAAA-T
* * *
91504880 GAA-GGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
91504905 CCAGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTACAAAT
*
91504932 CTAGGGGTATTTTGGTAATTTTACAAAT
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* **
91504960 TAAGGGTATTCCGGTAATTTTACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * *
91504986 CTAGGGGTATTTTAGTAATTTTACAGA-
1 C-AAGGGTATTTTGGTAATTTTACAAAT
* *
91505013 CTAGGGTATTTTGGTAATTTTACTAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * ** *
91505040 CGAGGATATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* **
91505067 CAAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
91505094 CGAGGGTA
1 CAAGGGTA
91505102 ACACAGTAAT
Statistics
Matches: 262, Mismatches: 60, Indels: 22
0.76 0.17 0.06
Matches are distributed among these distances:
25 1 0.00
26 21 0.08
27 210 0.80
28 16 0.06
29 14 0.05
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:91505109 original size:27 final size:27
Alignment explanation
Indices: 91505079--91505263 Score: 210
Period size: 27 Copynumber: 6.9 Consensus size: 27
91505069 AGGGTATTTT
* * *
91505079 AGTAATTTTGTAAATCGAGGGTAACAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* * * *
91505106 AGTAATTCTGTAAATCAAAGGTAAAAT
1 AGTAATTCTATAAATCGAGGGTAAAAC
*
91505133 AGTAATTTTATAAATCGAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* *
91505160 GGTAATTCTATAAATCAAGGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* * *
91505187 GGTAATTCTATAAATTGAAGGTAAAAC
1 AGTAATTCTATAAATCGAGGGTAAAAC
* *
91505214 -GATAATTTTGTAAATCGAGGGTAAAAC
1 AG-TAATTCTATAAATCGAGGGTAAAAC
*
91505241 TGTAATTCTATAAATCGAGGGTA
1 AGTAATTCTATAAATCGAGGGTA
91505264 CTTTGGTAAT
Statistics
Matches: 134, Mismatches: 22, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 132 0.99
28 1 0.01
ACGTcount: A:0.42, C:0.09, G:0.19, T:0.30
Consensus pattern (27 bp):
AGTAATTCTATAAATCGAGGGTAAAAC
Found at i:91505274 original size:81 final size:81
Alignment explanation
Indices: 91505080--91505263 Score: 244
Period size: 81 Copynumber: 2.3 Consensus size: 81
91505070 GGGTATTTTA
* * * * * * *
91505080 GTAATTTTGTAAATCGAGGGTAACACAGTAATTCTGTAAATCAAAGGTAAAATAGTAATTTTATA
1 GTAATTCTATAAATCAAGGGTAAAACGGTAATTCTATAAATCAAAGGTAAAAGAGTAATTTTATA
91505145 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
** *
91505161 GTAATTCTATAAATCAAGGGTAAAACGGTAATTCTATAAATTGAAGGTAAAACGA-TAATTTTGT
1 GTAATTCTATAAATCAAGGGTAAAACGGTAATTCTATAAATCAAAGGTAAAA-GAGTAATTTTAT
*
91505225 AAATCGAGGGTAAAACT
65 AAATCGAGGGTAAAACG
*
91505242 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCAAGGGTA
91505264 CTTTGGTAAT
Statistics
Matches: 90, Mismatches: 12, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
81 89 0.99
82 1 0.01
ACGTcount: A:0.42, C:0.09, G:0.20, T:0.30
Consensus pattern (81 bp):
GTAATTCTATAAATCAAGGGTAAAACGGTAATTCTATAAATCAAAGGTAAAAGAGTAATTTTATA
AATCGAGGGTAAAACG
Found at i:91505276 original size:54 final size:55
Alignment explanation
Indices: 91505052--91505263 Score: 234
Period size: 54 Copynumber: 3.9 Consensus size: 55
91505042 AGGATATTTT
* *** * * *
91505052 GGTAATTTTGTAAACCAAGGGT-ATTTTAGTAATTTTGTAAATCGAGGGTAACAC
1 GGTAATTTTGTAAATCAAGGGTAAAACTAGTAATTCTATAAATCGAGGGTAAAAC
* * * *
91505106 AGTAATTCTGTAAATCAAAGGTAAAA-TAGTAATTTTATAAATCGAGGGTAAAAC
1 GGTAATTTTGTAAATCAAGGGTAAAACTAGTAATTCTATAAATCGAGGGTAAAAC
* * * * *
91505160 GGTAATTCTATAAATCAAGGGTAAAAC-GGTAATTCTATAAATTGAAGGTAAAAC
1 GGTAATTTTGTAAATCAAGGGTAAAACTAGTAATTCTATAAATCGAGGGTAAAAC
* *
91505214 GATAATTTTGTAAATCGAGGGTAAAACT-GTAATTCTATAAATCGAGGGTA
1 GGTAATTTTGTAAATCAAGGGTAAAACTAGTAATTCTATAAATCGAGGGTA
91505264 CTTTGGTAAT
Statistics
Matches: 134, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
54 133 0.99
55 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.20, T:0.31
Consensus pattern (55 bp):
GGTAATTTTGTAAATCAAGGGTAAAACTAGTAATTCTATAAATCGAGGGTAAAAC
Found at i:91508204 original size:46 final size:46
Alignment explanation
Indices: 91508095--91508416 Score: 405
Period size: 46 Copynumber: 6.9 Consensus size: 46
91508085 TTTGACATGA
* * * *
91508095 TGCCATAGTATCTTTCAACTATGGTCTTACTCATTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTC-T--T-ATTCA-TTTCATATCACGT
* *
91508145 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
* *
91508191 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
91508237 TGCCAT-GTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
* ** * *
91508282 TACCATGGTATCTTTCAACCATGGTCTTACACATTTCATATTAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
** *
91508328 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
* ** *
91508374 TACCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCA
91508417 GAGAGCACAC
Statistics
Matches: 255, Mismatches: 15, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
45 46 0.18
46 183 0.72
47 1 0.00
49 1 0.00
50 24 0.09
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.42
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGT
Found at i:91508330 original size:137 final size:138
Alignment explanation
Indices: 91508095--91508416 Score: 405
Period size: 137 Copynumber: 2.3 Consensus size: 138
91508085 TTTGACATGA
* * * *
91508095 TGCCATAGTATCTTTCAACTATGGTCTTACTCATTCATTTTC-TGTCATGTTGCCATGGTATCTT
1 TGCCATAGTATCTTTCAACCATGGTC-T--T-ATTCA-TTTCATATCACGTTACCATGGTATCTT
** * * ** *
91508159 TCAACCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTATTCT
61 TCAACCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
*
91508224 TTTCATGTCACGT
126 TTTCATATCACGT
91508237 TGCCAT-GTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTACCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTACCATGGTATCTTTCAAC
* *
91508301 CATGGTCTTACACATTTCATATTAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
66 CATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
*
91508366 TATCAGGT
131 TATCACGT
* * ** *
91508374 TACCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCA
1 TGCCATAGTATCTTTCAACCATGGTCTTATTCATTTCATATCA
91508417 GAGAGCACAC
Statistics
Matches: 159, Mismatches: 19, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
136 4 0.03
137 96 0.60
138 34 0.21
140 1 0.01
141 18 0.11
142 6 0.04
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.42
Consensus pattern (138 bp):
TGCCATAGTATCTTTCAACCATGGTCTTATTCATTTCATATCACGTTACCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
TATCACGT
Found at i:91510518 original size:16 final size:16
Alignment explanation
Indices: 91510499--91510537 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
91510489 AATTTTTCCC
*
91510499 TTTTTCCTTCTTTCTT
1 TTTTTCCTTCCTTCTT
91510515 TTTTTCCTTCCTTCTT
1 TTTTTCCTTCCTTCTT
*
91510531 TCTTTCC
1 TTTTTCC
91510538 CCTGCTCTCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTTTCCTTCCTTCTT
Found at i:91510596 original size:20 final size:21
Alignment explanation
Indices: 91510562--91510608 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
91510552 CGTTTCATCC
*
91510562 TTTCTTTCTTTTTTTATTCTT
1 TTTCTTTCTTCTTTTATTCTT
*
91510583 TTTC-TTCTTCTTTTTTTC-T
1 TTTCTTTCTTCTTTTATTCTT
91510602 TTTCTTT
1 TTTCTTT
91510609 TATATATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 5 0.22
20 14 0.61
21 4 0.17
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (21 bp):
TTTCTTTCTTCTTTTATTCTT
Found at i:91510600 original size:14 final size:13
Alignment explanation
Indices: 91510562--91510609 Score: 53
Period size: 13 Copynumber: 3.6 Consensus size: 13
91510552 CGTTTCATCC
*
91510562 TTTCTTTCTTT-T
1 TTTCTTTTTTTCT
*
91510574 TTTATTCTTTTTCT
1 TTTCTT-TTTTTCT
91510588 TCTTCTTTTTTTCT
1 T-TTCTTTTTTTCT
91510602 TTTCTTTT
1 TTTCTTTT
91510610 ATATATATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
12 5 0.17
13 11 0.37
14 10 0.33
15 4 0.13
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTCTTTTTTTCT
Found at i:91510601 original size:11 final size:11
Alignment explanation
Indices: 91510562--91510602 Score: 55
Period size: 11 Copynumber: 3.5 Consensus size: 11
91510552 CGTTTCATCC
91510562 TTTCTTTCTTTT
1 TTTC-TTCTTTT
*
91510574 TTTATTCTTTT
1 TTTCTTCTTTT
91510585 TCTTCTTCTTTT
1 T-TTCTTCTTTT
91510597 TTTCTT
1 TTTCTT
91510603 TTCTTTTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
11 13 0.50
12 13 0.50
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.80
Consensus pattern (11 bp):
TTTCTTCTTTT
Found at i:91522381 original size:14 final size:15
Alignment explanation
Indices: 91522364--91522395 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
91522354 TTCCAGAAGC
91522364 ATTTA-AAAAGAAAA
1 ATTTAGAAAAGAAAA
91522378 ATTTAGAAAAGAAAA
1 ATTTAGAAAAGAAAA
91522393 ATT
1 ATT
91522396 AAACTAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.66, C:0.00, G:0.09, T:0.25
Consensus pattern (15 bp):
ATTTAGAAAAGAAAA
Found at i:91526515 original size:21 final size:21
Alignment explanation
Indices: 91526489--91526534 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
91526479 TGACTCCAGA
*
91526489 TCTTGCAGA-TCATCAATCTTC
1 TCTTGCA-ACTCATCAATCATC
*
91526510 TCTTGCAACTCATCATTCATC
1 TCTTGCAACTCATCAATCATC
91526531 TCTT
1 TCTT
91526535 TCATCTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 21 0.95
ACGTcount: A:0.22, C:0.30, G:0.07, T:0.41
Consensus pattern (21 bp):
TCTTGCAACTCATCAATCATC
Found at i:91527442 original size:932 final size:932
Alignment explanation
Indices: 91525639--91528433 Score: 4928
Period size: 932 Copynumber: 3.0 Consensus size: 932
91525629 TTCTGTCCTT
* * * *
91525639 CTGCAGGTGTTTCACCAACGGAATCTCCATGATAGCCTCTGCCTTTTTTATTACTAAAAAGTCTA
1 CTGCAGGTGTTTCACCAACAGAATCTTCATGATCGCCTCTGCC-TTTTCATTACTAAAAAGTCTA
** * *
91525704 GTAATTACTTCCTGTTTACACTGTCTTAAATTTAAATCAATCAAGTTTGCCACTTTTGTTACACT
65 GTAATTACTTCCTCCTTATACTGTCTTGAATTTAAATCAATCAAGTTTGCCACTTTTGTTACACT
* *
91525769 ATAATCACTAGCT-AATTTTGAATTCTTTGGTTTTCTAGTTCAGGAACCCAGGCATCTTGCCAAA
130 GTAATCACTAGCTGAATCTTGAATTCTTTGGTTTTCTAGTTCAGGAACCCAGGCATCTTGCCAAA
*
91525833 CTGAGATGTTATCACCATTACCAACTCTCCAAGCCATACCATATTGCAAGGCTTTCCTTTTGCCC
195 CTGAGATGTTATCACCATTACCAACTCTCCAAGCCATACCATATTGCAAGACTTTCCTTTTGCCC
91525898 AAATGTTTCGCCAGGTATAAAAAGGGAAGTTTCCTAACTCTACTTACATAAAGTCTGTTTGAGGA
260 AAATGTTTCGCCAGGTATAAAAAGGGAAGTTTCCTAACTCTACTTACATAAAGTCTGTTTGAGGA
91525963 TAATATTTAACCTTTAATGTCAGTGCAAGTAACGAATCGGGATACTCTAATAATTGCCAGCCATG
325 TAATATTTAACCTTTAATGTCAGTGCAAGTAACGAATCGGGATACTCTAATAATTGCCAGCCATG
*
91526028 TTTTGCGAGAAGGGCCATATTAAACTCAAGCAAACTATGAAAACCCATCCCACCATCTAATTTTA
390 TTTTGCGAGAAGGGCCATATTAAACTCAGGCAAACTATGAAAACCCATCCCACCATCTAATTTTA
91526093 ACGCACATAACTTCAATTGCACCAATGCATTCACCGCTTCCCCTTCTATTTTTGCCATCAAAACT
455 ACGCACATAACTTCAATTGCACCAATGCATTCACCGCTTCCCCTTCTATTTTTGCCATCAAAACT
91526158 TGTAAATAATCTGCTCCATTTCATGGCATAAAGAATTTGGTAAAAGAAAACACAACATAGCATAG
520 TGTAAATAATCTGCTCCATTTCATGGCATAAAGAATTTGGTAAAAGAAAACACAACATAGCATAG
*
91526223 GTTGGGTTTGCTTGTAACACACTTTTAATAAAAACCTCTTTCCTACCTTGTGATAATGCCTTAAT
585 GTTGGGTTTGCTTGTAACACACTTTTAATAAAAACCTCTTTCCCACCTTGTGATAATGCCTTAAT
* *
91526288 GCACAAATTATTAACACATTCTACCATTCAATCCCTTAAGCCCTGAAAACTCCTCCTCTTCTATT
650 GCACCAATTATTAACACATTCTGCCATTCAATCCCTTAAGCCCTGAAAACTCCTCCTCTTCTATT
*
91526353 TTTCAACCATATTCGACAAACCTAGATACTTTTCTAGTTCCTCCAAAAATCTTACTTGCAAAGTT
715 TTTCAACCATATTCGGCAAACCTAGATACTTTTCTAGTTCCTCCAAAAATCTTACTTGCAAAGTT
* * *
91526418 CACGAAATCAAATCTTTATCTTATATCGGACTATTAGCACTAAAAAATAAAGCTTTTTTATTGAC
780 CACGAAATCAAATCTCTGTCTTATATCGGACTATTAGCACTAAAAAATAAAGCTTTTTTGTTGAC
*
91526483 TCCAGATCTTGCAGATCATCAATCTTCTCTTGCAACTCATCATTCATCTCTTTCATCTTTTTCTG
845 TCCAGATCTTGCAGATCATCAATCTTCTCTTGCAACTCATCATTCATCTCTTCCATCTTTTTCTG
91526548 TACAGCTGTATCATCTTGTCGTC
910 TACAGCTGTATCATCTTGTCGTC
91526571 CTGCAGGTGTTTCACCAACAGAATCTTCATGATCGCCTCTGCCTTTTCATTACTAAAAAGTCTAG
1 CTGCAGGTGTTTCACCAACAGAATCTTCATGATCGCCTCTGCCTTTTCATTACTAAAAAGTCTAG
* *
91526636 TAATTACTTCTTCCTTATACTGTCTTGAATTTAAATCAATCAAGTTTGCCACTTTTGTTACATTG
66 TAATTACTTCCTCCTTATACTGTCTTGAATTTAAATCAATCAAGTTTGCCACTTTTGTTACACTG
*
91526701 TAATCACTAGCTGACTCTTGAATTCTTTGGTTTTCTAGTTCAGGAACCCAGGCATCTTGCCAAAC
131 TAATCACTAGCTGAATCTTGAATTCTTTGGTTTTCTAGTTCAGGAACCCAGGCATCTTGCCAAAC
91526766 TGAGATGTTATCACCATTACCAACTCTCCAAGCCATACCATATTGCAAGACTTTCCTTTTGCCCA
196 TGAGATGTTATCACCATTACCAACTCTCCAAGCCATACCATATTGCAAGACTTTCCTTTTGCCCA
* *
91526831 AATGTTTCGCTAGGTATAAAAAGGGAAGTTTCCTAACTCTGCTTACATAAAGTCTGTTTGAGGAT
261 AATGTTTCGCCAGGTATAAAAAGGGAAGTTTCCTAACTCTACTTACATAAAGTCTGTTTGAGGAT
91526896 AATATTTAACCTTTAATGTCAGTGCAAGTAACGAATCGGGATACTCTAATAATTGCCAGCCATGT
326 AATATTTAACCTTTAATGTCAGTGCAAGTAACGAATCGGGATACTCTAATAATTGCCAGCCATGT
91526961 TTTGCGAGAAGGGCCATATTAAACTCAGGCAAACTATGAAAACCCATCCCACCATCTAATTTTAA
391 TTTGCGAGAAGGGCCATATTAAACTCAGGCAAACTATGAAAACCCATCCCACCATCTAATTTTAA
91527026 CGCACATAACTTCAATTGCACCAATGCATTCACCGCTTCCCCTTCTATTTTTGCCATCAAAACTT
456 CGCACATAACTTCAATTGCACCAATGCATTCACCGCTTCCCCTTCTATTTTTGCCATCAAAACTT
91527091 GTAAATAATCTGCTCCATTTCATGGCATAAAGAATTTGGTAAAAGAAAACACAACATAGCATAGG
521 GTAAATAATCTGCTCCATTTCATGGCATAAAGAATTTGGTAAAAGAAAACACAACATAGCATAGG
*
91527156 TTGGGTTTGCTTGTAACACACTTTTAATAAAAACCTCTTTCCCACCTTGTGATAATACCTTAATG
586 TTGGGTTTGCTTGTAACACACTTTTAATAAAAACCTCTTTCCCACCTTGTGATAATGCCTTAATG
91527221 CACCAATTATTAACACATTCTGCCATTCAATCCCTTAAGCCCTGAAAACTCCTCCTCTTCTATTT
651 CACCAATTATTAACACATTCTGCCATTCAATCCCTTAAGCCCTGAAAACTCCTCCTCTTCTATTT
*
91527286 TTCAACCATATTCGGCAAACCTAGATACTTTTCTAATTCCTCCAAAAATCTTACTTGCAAAGTTC
716 TTCAACCATATTCGGCAAACCTAGATACTTTTCTAGTTCCTCCAAAAATCTTACTTGCAAAGTTC
91527351 ACGAAATCAAATCTCTGTCTTATATCGGACTATTAGCACTAAAAAATAAAGCTTTTTTGTTGACT
781 ACGAAATCAAATCTCTGTCTTATATCGGACTATTAGCACTAAAAAATAAAGCTTTTTTGTTGACT
91527416 CCAGATCTTGCAGATCATCAATCTTCTCTTGCAACTCATCATTCATCTCTTCCATCTTTTTCTGT
846 CCAGATCTTGCAGATCATCAATCTTCTCTTGCAACTCATCATTCATCTCTTCCATCTTTTTCTGT
91527481 ACAGCTGTATCATCTTGTCGTC
911 ACAGCTGTATCATCTTGTCGTC
*
91527503 CTGCAGGTGTTTCACCAACAGAATCTTCATGATCGCCTCTGCCTTTTCATTACTAAAAAGTCAAG
1 CTGCAGGTGTTTCACCAACAGAATCTTCATGATCGCCTCTGCCTTTTCATTACTAAAAAGTCTAG
* *
91527568 TAATTACTTCGTCCTTATACTGTCTTGAATTTAAATCAATCAAGATTGCCACTTTTGTTACACTG
66 TAATTACTTCCTCCTTATACTGTCTTGAATTTAAATCAATCAAGTTTGCCACTTTTGTTACACTG
*
91527633 TAATCACTAGCTGAGTCTTGAATTCTTTGGTTTTCTAGTTCAGGAACCCAGGCATCTTGCCAAAC
131 TAATCACTAGCTGAATCTTGAATTCTTTGGTTTTCTAGTTCAGGAACCCAGGCATCTTGCCAAAC
*
91527698 TGAGATGTTATTACCATTACCAACTCTCCAAGCCATACCATATTGCAAGACTTTCCTTTTGCCCA
196 TGAGATGTTATCACCATTACCAACTCTCCAAGCCATACCATATTGCAAGACTTTCCTTTTGCCCA
*
91527763 AATGTTTCACCAGGTATAAAAAGGGAAGTTTCCTAACTCTACTTACATAAAGTCTGTTTGAGGAT
261 AATGTTTCGCCAGGTATAAAAAGGGAAGTTTCCTAACTCTACTTACATAAAGTCTGTTTGAGGAT
*
91527828 AATATTTAACCTTTAATGTCAGTGCAAGTAACGAATCGAGATACTCTAATAATTGCCAGCCATGT
326 AATATTTAACCTTTAATGTCAGTGCAAGTAACGAATCGGGATACTCTAATAATTGCCAGCCATGT
*
91527893 TTTACGAGAAGGGCCATATTAAACTCAGGCAAACTATGAAAACCCATCCCACCATCTAATTTTAA
391 TTTGCGAGAAGGGCCATATTAAACTCAGGCAAACTATGAAAACCCATCCCACCATCTAATTTTAA
91527958 CGCACATAACTTCAATTGCACCAATGCATTCACCGCTTCCCCTTCTATTTTTGCCATCAAAACTT
456 CGCACATAACTTCAATTGCACCAATGCATTCACCGCTTCCCCTTCTATTTTTGCCATCAAAACTT
* *
91528023 TTAAATAATCTGCTCCATTTCATGGCATAAAGAATTTGGTAACAGAAAACACAACATAGCATAAG
521 GTAAATAATCTGCTCCATTTCATGGCATAAAGAATTTGGTAAAAGAAAACACAACATAGCAT-AG
* * * * * * *
91528088 TTTTGGATTGTTTGTAACACACTTTGAATAAAAACCTCTTTCCCACCTTGTGATAGTGCCTTAAC
585 GTTGGGTTTGCTTGTAACACACTTTTAATAAAAACCTCTTTCCCACCTTGTGATAATGCCTTAAT
* * * * * *
91528153 GCACCAATTATTAACACATTTTGTCATTCTATCCCTTAAGCCTTGAAAACTCCCCCTCTTCTGTT
650 GCACCAATTATTAACACATTCTGCCATTCAATCCCTTAAGCCCTGAAAACTCCTCCTCTTCTATT
** * * * * * *
91528218 TTTTGACCACATTCGGCAAACCTAGATACTTTTCTAGTTCTTTCAAACATCTTCCCTGCAAAGTT
715 TTTCAACCATATTCGGCAAACCTAGATACTTTTCTAGTTCCTCCAAAAATCTTACTTGCAAAGTT
* * **
91528283 CACGAAATCAAATCTCTGTCTTATCTCGGACAATTATAACTAAAAAATAAAGCTTTTTTTGTTGA
780 CACGAAATCAAATCTCTGTCTTATATCGGACTATTAGCACTAAAAAATAAAGC-TTTTTTGTTGA
* * * *
91528348 CTTCAGATCTTGCAGATCATCAAACTTTTCTTGCAACTCAAT-ATTCATCTCTTCCATCTTCTTC
844 CTCCAGATCTTGCAGATCATCAATCTTCTCTTGCAACTC-ATCATTCATCTCTTCCATCTTTTTC
* *
91528412 TGTACAGTTGCATCATCTTGTC
908 TGTACAGCTGTATCATCTTGTC
91528434 CAAGATATTA
Statistics
Matches: 1786, Mismatches: 73, Indels: 6
0.96 0.04 0.00
Matches are distributed among these distances:
931 91 0.05
932 1382 0.77
933 223 0.12
934 88 0.05
935 2 0.00
ACGTcount: A:0.30, C:0.24, G:0.12, T:0.34
Consensus pattern (932 bp):
CTGCAGGTGTTTCACCAACAGAATCTTCATGATCGCCTCTGCCTTTTCATTACTAAAAAGTCTAG
TAATTACTTCCTCCTTATACTGTCTTGAATTTAAATCAATCAAGTTTGCCACTTTTGTTACACTG
TAATCACTAGCTGAATCTTGAATTCTTTGGTTTTCTAGTTCAGGAACCCAGGCATCTTGCCAAAC
TGAGATGTTATCACCATTACCAACTCTCCAAGCCATACCATATTGCAAGACTTTCCTTTTGCCCA
AATGTTTCGCCAGGTATAAAAAGGGAAGTTTCCTAACTCTACTTACATAAAGTCTGTTTGAGGAT
AATATTTAACCTTTAATGTCAGTGCAAGTAACGAATCGGGATACTCTAATAATTGCCAGCCATGT
TTTGCGAGAAGGGCCATATTAAACTCAGGCAAACTATGAAAACCCATCCCACCATCTAATTTTAA
CGCACATAACTTCAATTGCACCAATGCATTCACCGCTTCCCCTTCTATTTTTGCCATCAAAACTT
GTAAATAATCTGCTCCATTTCATGGCATAAAGAATTTGGTAAAAGAAAACACAACATAGCATAGG
TTGGGTTTGCTTGTAACACACTTTTAATAAAAACCTCTTTCCCACCTTGTGATAATGCCTTAATG
CACCAATTATTAACACATTCTGCCATTCAATCCCTTAAGCCCTGAAAACTCCTCCTCTTCTATTT
TTCAACCATATTCGGCAAACCTAGATACTTTTCTAGTTCCTCCAAAAATCTTACTTGCAAAGTTC
ACGAAATCAAATCTCTGTCTTATATCGGACTATTAGCACTAAAAAATAAAGCTTTTTTGTTGACT
CCAGATCTTGCAGATCATCAATCTTCTCTTGCAACTCATCATTCATCTCTTCCATCTTTTTCTGT
ACAGCTGTATCATCTTGTCGTC
Found at i:91527447 original size:21 final size:21
Alignment explanation
Indices: 91527421--91527466 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
91527411 TGACTCCAGA
*
91527421 TCTTGCAGA-TCATCAATCTTC
1 TCTTGCA-ACTCATCAATCATC
*
91527442 TCTTGCAACTCATCATTCATC
1 TCTTGCAACTCATCAATCATC
91527463 TCTT
1 TCTT
91527467 CCATCTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 1 0.05
21 21 0.95
ACGTcount: A:0.22, C:0.30, G:0.07, T:0.41
Consensus pattern (21 bp):
TCTTGCAACTCATCAATCATC
Found at i:91528908 original size:36 final size:36
Alignment explanation
Indices: 91528861--91528934 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
91528851 CAAAGCTACT
91528861 AATTAATCGTAGGCTAACCTTATCCCTGAAGCGTAA
1 AATTAATCGTAGGCTAACCTTATCCCTGAAGCGTAA
91528897 AATTAATCGTAGGCTAACCTTATCCCTGAAGCGTAA
1 AATTAATCGTAGGCTAACCTTATCCCTGAAGCGTAA
91528933 AA
1 AA
91528935 AGAGTCAACG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.35, C:0.22, G:0.16, T:0.27
Consensus pattern (36 bp):
AATTAATCGTAGGCTAACCTTATCCCTGAAGCGTAA
Found at i:91535433 original size:23 final size:22
Alignment explanation
Indices: 91535391--91535433 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
91535381 TGAGATAAAA
*
91535391 AAAAAACCTCAAGTATCAAATT
1 AAAAAACCTCAAGTACCAAATT
*
91535413 AAAAAACCTTCAGGTACCAAA
1 AAAAAACC-TCAAGTACCAAA
91535434 GTGAACATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.53, C:0.21, G:0.07, T:0.19
Consensus pattern (22 bp):
AAAAAACCTCAAGTACCAAATT
Found at i:91542744 original size:31 final size:31
Alignment explanation
Indices: 91542683--91542745 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
91542673 ATAAATGCAA
* * *
91542683 AATATATATAATTTTTAAATAAAAATAATAT
1 AATATAAATAATTTTTAAAAAAAAAAAATAT
91542714 AATATAAAT-ATTTTTAAAAAAATAAAAATAT
1 AATATAAATAATTTTTAAAAAAA-AAAAATAT
91542745 A
1 A
91542746 GTTGGACCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 12 0.43
31 16 0.57
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (31 bp):
AATATAAATAATTTTTAAAAAAAAAAAATAT
Found at i:91546222 original size:35 final size:35
Alignment explanation
Indices: 91546183--91546257 Score: 91
Period size: 35 Copynumber: 2.1 Consensus size: 35
91546173 AAATTAATTA
*
91546183 TTATATTTTATACATTATTTTTCTCTTTGTT-TT-TT
1 TTATATTTTATAC-TTATTTTT-TATTTGTTCTTCTT
* *
91546218 TTATATTTTTTTCTTATTTTTTATTTGTTCTTCTT
1 TTATATTTTATACTTATTTTTTATTTGTTCTTCTT
91546253 TTATA
1 TTATA
91546258 ATATCAGACA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
33 7 0.20
34 10 0.29
35 18 0.51
ACGTcount: A:0.16, C:0.08, G:0.03, T:0.73
Consensus pattern (35 bp):
TTATATTTTATACTTATTTTTTATTTGTTCTTCTT
Found at i:91546251 original size:20 final size:20
Alignment explanation
Indices: 91546214--91546252 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
91546204 TCTCTTTGTT
*
91546214 TTTTTTATATTTTTTTCTTA
1 TTTTTTATATTTTCTTCTTA
91546234 TTTTTTAT-TTGTTCTTCTT
1 TTTTTTATATT-TTCTTCTT
91546253 TTATAATATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.10, C:0.08, G:0.03, T:0.79
Consensus pattern (20 bp):
TTTTTTATATTTTCTTCTTA
Found at i:91554563 original size:30 final size:30
Alignment explanation
Indices: 91554505--91554563 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
91554495 TTCATTTTTA
* **
91554505 TTAAAATTTAAAATTTAAATTTTTTTATTT
1 TTAAAATTTAAAATTTAAATCTAATTATTT
*
91554535 TTAAAATTTAAAATTTAAGTCTAATTATT
1 TTAAAATTTAAAATTTAAATCTAATTATT
91554564 AACACTTTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (30 bp):
TTAAAATTTAAAATTTAAATCTAATTATTT
Found at i:91554710 original size:29 final size:28
Alignment explanation
Indices: 91554678--91554746 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 28
91554668 AATGAAACTA
*
91554678 AAATTTAAAATCTAAAAGGTAGAAGGACT
1 AAATTTAAAATATAAAA-GTAGAAGGACT
*
91554707 AAATTCTTAAAA-ATAAAAGTATAAGGACT
1 AAA-T-TTAAAATATAAAAGTAGAAGGACT
*
91554736 AAATTTTAAAT
1 AAATTTAAAAT
91554747 TTAAGAAGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
27 5 0.15
28 1 0.03
29 16 0.47
30 6 0.18
31 6 0.18
ACGTcount: A:0.54, C:0.06, G:0.12, T:0.29
Consensus pattern (28 bp):
AAATTTAAAATATAAAAGTAGAAGGACT
Done.