Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 269 of 295
Found at i:92003858 original size:20 final size:20
Alignment explanation
Indices: 92003835--92003875 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
92003825 TTTATTACAC
92003835 TTCATATTTCCTTATTTTAT
1 TTCATATTTCCTTATTTTAT
92003855 TTCATATTTCCTTATTTTAT
1 TTCATATTTCCTTATTTTAT
92003875 T
1 T
92003876 ATCTTAATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.20, C:0.15, G:0.00, T:0.66
Consensus pattern (20 bp):
TTCATATTTCCTTATTTTAT
Found at i:92019588 original size:20 final size:20
Alignment explanation
Indices: 92019563--92019610 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
92019553 ATTCCCCATT
92019563 AAAGGAGGAAGCAGCTACAC
1 AAAGGAGGAAGCAGCTACAC
92019583 AAAGGAGGAAGCAGCTACAC
1 AAAGGAGGAAGCAGCTACAC
92019603 AAAGGAGG
1 AAAGGAGG
92019611 GACGACATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.46, C:0.17, G:0.33, T:0.04
Consensus pattern (20 bp):
AAAGGAGGAAGCAGCTACAC
Found at i:92021112 original size:12 final size:12
Alignment explanation
Indices: 92021097--92021130 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
92021087 ATGCAGAAGG
92021097 AGATGCAAGAAC
1 AGATGCAAGAAC
* *
92021109 AGATGCAAGTAT
1 AGATGCAAGAAC
92021121 AGATGCAAGA
1 AGATGCAAGA
92021131 GAAAATGGCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.47, C:0.12, G:0.26, T:0.15
Consensus pattern (12 bp):
AGATGCAAGAAC
Found at i:92029538 original size:42 final size:44
Alignment explanation
Indices: 92029447--92029576 Score: 111
Period size: 44 Copynumber: 3.0 Consensus size: 44
92029437 GGACGGCGAA
* * * ** ****
92029447 TCTTATCTTCCCGAGGTAGCAGGGGAGCAGATTTTAGCCACTAG
1 TCTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAAAGATTGTAG
* *
92029491 CCTTATC-T-CTGAGGTAGCAAGGGAGCAGGCTAAAGATTGTAG
1 TCTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAAAGATTGTAG
* * * *
92029533 TCTTATCTTCCTGAGGTAGTAATGGATCAGACTGAAGATTGTAG
1 TCTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAAAGATTGTAG
92029577 GTTTTGTCTC
Statistics
Matches: 67, Mismatches: 17, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
42 30 0.45
43 2 0.03
44 35 0.52
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (44 bp):
TCTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAAAGATTGTAG
Found at i:92029752 original size:178 final size:177
Alignment explanation
Indices: 92029398--92029853 Score: 587
Period size: 178 Copynumber: 2.6 Consensus size: 177
92029388 TCGGTGAATT
* * * **
92029398 TAGATTTTGTCTCC-CTGAAATTGCAGTG-GAGCAGATCGAGGACGGCGAATCTTATCTTCCCGA
1 TAGATTTTGTCTCCTC-AAAATAGCAGTGAG-GCAGATCAAAAACGGCGAATCTTATCTT-CCGA
* * *
92029461 GGTAGCAGGGGAGCAGATTTTAGCCACTAGCCTTA--TCTCTGAGGTAGCAAGGGAGCAGGCTAA
63 GGTAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATTTCTCTAAGGTACCAAGGGAGCAGGCTAA
* * * *
92029524 AGATTGTAGTCTTATCTTCCTGAGGTAGTAATGGATCAGACTGAAGATTG
128 AGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGGAGCAAACTGAAGATTG
* * * * * * *
92029574 TAGGTTTTGTCTCCTCGAGATAGCATTGAGGTAGATCAAAAATGGTGAATCTTATCTTCTCGAGG
1 TAGATTTTGTCTCCTCAAAATAGCAGTGAGGCAGATCAAAAACGGCGAATCTTATCTTC-CGAGG
* * * * * *
92029639 TAGGAGGGAAGTAGATTTTAGCCACCAGCCTTATTTCTTTAAGGTACCAAGGGAGCAGGTTGAAG
65 TAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATTTCTCTAAGGTACCAAGGGAGCAGGCTAAAG
*
92029704 ATTGTAGTCTTATCTTTCTGAGGTAGCAAGGGAGCAAACTGAAGATTG
130 ATTGTAGTCTTATCTTCCTGAGGTAGCAAGGGAGCAAACTGAAGATTG
* *
92029752 TAGATTTTGTCTCCTCAAAATAGTAGTGGGGCAGATCAAAAACGGCGAATCTTATCTTCCTGAGG
1 TAGATTTTGTCTCCTCAAAATAGCAGTGAGGCAGATCAAAAACGGCGAATCTTATCTTCC-GAGG
92029817 TAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATTTC
65 TAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATTTC
92029854 CCTGAGCAGC
Statistics
Matches: 238, Mismatches: 36, Indels: 10
0.84 0.13 0.04
Matches are distributed among these distances:
175 1 0.00
176 78 0.33
177 3 0.01
178 156 0.66
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (177 bp):
TAGATTTTGTCTCCTCAAAATAGCAGTGAGGCAGATCAAAAACGGCGAATCTTATCTTCCGAGGT
AGCAGGGGAGCAGATTTTAGCCACCAGCCTTATTTCTCTAAGGTACCAAGGGAGCAGGCTAAAGA
TTGTAGTCTTATCTTCCTGAGGTAGCAAGGGAGCAAACTGAAGATTG
Found at i:92029895 original size:178 final size:177
Alignment explanation
Indices: 92029398--92029907 Score: 582
Period size: 178 Copynumber: 2.9 Consensus size: 177
92029388 TCGGTGAATT
* * * ** *
92029398 TAGATTTTGTCTCC-CTGAAATTGCAGTGGAGCAGATCGAGGACGGCGAATCTTATCTTCCCGAG
1 TAGATTTTGTCTCCTC-GAAATAGCAGTGGGGCAGATCAAAAACGGCGAATCTTATCTTCCTGAG
* *
92029462 GTAGCAGGGGAGCAGATTTTAGCCACTAGCCTTA--TCTCTGAGGTAGCAAGGGAGCAGGCTAAA
65 GTAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATTTCTCTGAGGTAGCAAGGGAGCAGTC-AAA
* * * * *
92029525 GATTGTAGTCTTATCTTCCTGAGGTAGTAATGGATCAGACTGAAGATTG
129 GATTGTAGTCTTATCTTTCTGAGGTAGCAAGGGAGCAAACTGAAGATTG
* * * * * * *
92029574 TAGGTTTTGTCTCCTCGAGATAGCATTGAGGTAGATCAAAAATGGTGAATCTTATCTT-CTCGAG
1 TAGATTTTGTCTCCTCGAAATAGCAGTGGGGCAGATCAAAAACGGCGAATCTTATCTTCCT-GAG
* * * * * * **
92029638 GTAGGAGGGAAGTAGATTTTAGCCACCAGCCTTATTTCTTTAAGGTACCAAGGGAGCAGGTTGAA
65 GTAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATTTCTCTGAGGTAGCAAGGGAGCA-GTCAAA
92029703 GATTGTAGTCTTATCTTTCTGAGGTAGCAAGGGAGCAAACTGAAGATTG
129 GATTGTAGTCTTATCTTTCTGAGGTAGCAAGGGAGCAAACTGAAGATTG
* *
92029752 TAGATTTTGTCTCCTCAAAATAGTAGTGGGGCAGATCAAAAACGGCGAATCTTATCTTCCTGAGG
1 TAGATTTTGTCTCCTCGAAATAGCAGTGGGGCAGATCAAAAACGGCGAATCTTATCTTCCTGAGG
* * *
92029817 TAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATTTCCCTGA-GCAGC-AGTGGAACAGATCAAA
66 TAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATTTCTCTGAGGTAGCAAG-GGAGCAG-TCAAA
* * * *
92029880 GACTGCGAATCTTATCTTTCAGAGGTAG
129 GATTG-TAGTCTTATCTTTCTGAGGTAG
92029908 TAGGGAAGCA
Statistics
Matches: 273, Mismatches: 52, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
175 1 0.00
176 80 0.29
177 16 0.06
178 173 0.63
179 3 0.01
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.28
Consensus pattern (177 bp):
TAGATTTTGTCTCCTCGAAATAGCAGTGGGGCAGATCAAAAACGGCGAATCTTATCTTCCTGAGG
TAGCAGGGGAGCAGATTTTAGCCACCAGCCTTATTTCTCTGAGGTAGCAAGGGAGCAGTCAAAGA
TTGTAGTCTTATCTTTCTGAGGTAGCAAGGGAGCAAACTGAAGATTG
Found at i:92029969 original size:88 final size:88
Alignment explanation
Indices: 92029783--92029957 Score: 260
Period size: 88 Copynumber: 2.0 Consensus size: 88
92029773 AGTAGTGGGG
* * * * *
92029783 CAGATCAAAAACGGCGAATCTTATCTTCCTGAGGTAGCAGGGGAGCAGATTTTAGCCACCAGCCT
1 CAGATCAAAGACTGCGAATCTTATCTTCCAGAGGTAGCAGGGAAGCAGATTTAAGCCACCAGCCT
* *
92029848 TATTTCCCTGAGCAGCAGTGGAA
66 TATCTCCCTGAGCAACAGTGGAA
* * *
92029871 CAGATCAAAGACTGCGAATCTTATCTTTCAGAGGTAGTAGGGAAGCAGATTTAAGCCACTAGCCT
1 CAGATCAAAGACTGCGAATCTTATCTTCCAGAGGTAGCAGGGAAGCAGATTTAAGCCACCAGCCT
92029936 TATCTCCCTGAGCAACAGTGGA
66 TATCTCCCTGAGCAACAGTGGA
92029958 GCAGGCTAAA
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 77 1.00
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (88 bp):
CAGATCAAAGACTGCGAATCTTATCTTCCAGAGGTAGCAGGGAAGCAGATTTAAGCCACCAGCCT
TATCTCCCTGAGCAACAGTGGAA
Found at i:92030223 original size:44 final size:44
Alignment explanation
Indices: 92030173--92030312 Score: 131
Period size: 44 Copynumber: 3.2 Consensus size: 44
92030163 TTTCAAGTTC
*
92030173 CATTGGAGTAGATCGAAACTAAAAATTTCTTCTCCTTGAAACTA
1 CATTGGAGTAGATCGAAACTAAAAATTTCTTCTCCTTGAAATTA
* * * * * *
92030217 CATTGGAGTAGTTCGAAGC-CACAATTCTCATCTCCTTGAAATTC
1 CATTGGAGTAGATCGAAACTAAAAATT-TCTTCTCCTTGAAATTA
** * * *
92030261 CAGCGGAGTAGATCGAATA-TACAAATCTCTTCTCCCTGAAATTA
1 CATTGGAGTAGATCGAA-ACTAAAAATTTCTTCTCCTTGAAATTA
*
92030305 CAATGGAG
1 CATTGGAG
92030313 CAGGTAAAAG
Statistics
Matches: 73, Mismatches: 20, Indels: 6
0.74 0.20 0.06
Matches are distributed among these distances:
43 5 0.07
44 65 0.89
45 3 0.04
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.29
Consensus pattern (44 bp):
CATTGGAGTAGATCGAAACTAAAAATTTCTTCTCCTTGAAATTA
Found at i:92031905 original size:27 final size:27
Alignment explanation
Indices: 92031860--92032019 Score: 84
Period size: 27 Copynumber: 6.1 Consensus size: 27
92031850 TAAAAAAATA
** *
92031860 TTTTATATACCATTCATTTTAAATTAT
1 TTTTATATATTATTTATTTTAAATTAT
* *
92031887 TTTTATATATTATTTATTTTAACTTGT
1 TTTTATATATTATTTATTTTAAATTAT
* * * **
92031914 TTTAATGTAATGCTTA--TTAAA--AT
1 TTTTATATATTATTTATTTTAAATTAT
* * *
92031937 TTGTT-T-TACTATTTATTTAAAATAAT
1 TT-TTATATATTATTTATTTTAAATTAT
* * *
92031963 TTTATATACATTATTTATTCTAAACT-T
1 TTT-TATATATTATTTATTTTAAATTAT
* *
92031990 TTATATATATTATTTATTTTAGATT-T
1 TTTTATATATTATTTATTTTAAATTAT
92032016 TTTT
1 TTTT
92032020 CACGTATTAG
Statistics
Matches: 96, Mismatches: 29, Indels: 17
0.68 0.20 0.12
Matches are distributed among these distances:
22 6 0.06
23 4 0.04
24 5 0.05
25 5 0.05
26 27 0.28
27 37 0.39
28 12 0.12
ACGTcount: A:0.32, C:0.06, G:0.03, T:0.59
Consensus pattern (27 bp):
TTTTATATATTATTTATTTTAAATTAT
Found at i:92031978 original size:28 final size:25
Alignment explanation
Indices: 92031946--92032008 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 25
92031936 TTTGTTTTAC
92031946 TATTTATTTAAAATAATTTTATATACAT
1 TATTTATTT--AA-AATTTTATATACAT
* *
92031974 TATTTATTCTAAACTTTTATATATAT
1 TATTTATT-TAAAATTTTATATACAT
92032000 TATTTATTT
1 TATTTATTT
92032009 TAGATTTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
25 1 0.03
26 20 0.62
27 2 0.06
28 8 0.25
29 1 0.03
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.59
Consensus pattern (25 bp):
TATTTATTTAAAATTTTATATACAT
Found at i:92034861 original size:46 final size:46
Alignment explanation
Indices: 92034809--92035123 Score: 389
Period size: 46 Copynumber: 6.8 Consensus size: 46
92034799 GAGTGTGCTC
* * *
92034809 CCTGATATGAAATGTGTAAGACCATGGTTGAACGATACCATGGCAA
1 CCTGATATGAAATGAGTAAGACCATAGTTGAAAGATACCATGGCAA
* * *
92034855 CCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCGTGGCAA
1 CCTGATATGAAATGAGTAAGACCATAGTTGAAAGATACCATGGCAA
*
92034901 CCTGATATGAAATGTGTAAGACCATAGTTGAAAGATACCATGGCAA
1 CCTGATATGAAATGAGTAAGACCATAGTTGAAAGATACCATGGCAA
* * *
92034947 CGTGATATGAAATGAATAAGATCATAGTTGAAAGATACCATGGCAA
1 CCTGATATGAAATGAGTAAGACCATAGTTGAAAGATACCATGGCAA
* * *
92034993 TCTAACATGAAATGAGTAAGACCATAGTTGAAAGATACCATGGCAA
1 CCTGATATGAAATGAGTAAGACCATAGTTGAAAGATACCATGGCAA
* *** * * *
92035039 CATGACGGGAAAATGAATAATACCATGGTTGAAAGATACCATGGCAA
1 CCTGATATG-AAATGAGTAAGACCATAGTTGAAAGATACCATGGCAA
* * * *
92035086 CATGACA-GAAAACGAGTAAAACCATAGTTGAAAGATAC
1 CCTGATATG-AAATGAGTAAGACCATAGTTGAAAGATAC
92035124 TATAACAACA
Statistics
Matches: 241, Mismatches: 27, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
46 201 0.83
47 40 0.17
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (46 bp):
CCTGATATGAAATGAGTAAGACCATAGTTGAAAGATACCATGGCAA
Found at i:92039460 original size:15 final size:15
Alignment explanation
Indices: 92039440--92039470 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
92039430 TTGAAAATTG
92039440 TAGTGTGAGATTCCT
1 TAGTGTGAGATTCCT
92039455 TAGTGTGAGATTCCT
1 TAGTGTGAGATTCCT
92039470 T
1 T
92039471 TCTCAAAGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.13, G:0.26, T:0.42
Consensus pattern (15 bp):
TAGTGTGAGATTCCT
Found at i:92045600 original size:50 final size:51
Alignment explanation
Indices: 92045539--92045667 Score: 197
Period size: 50 Copynumber: 2.5 Consensus size: 51
92045529 GGCCATGGCA
* *
92045539 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGATAAGTG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
*
92045590 A-AAGTGATAAGTAATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
1 ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
* * *
92045640 ACAAGTGAAAAGTGGTAACTTCGGCTAC
1 ACAAGTGATAAGTGATAGCTTCGGCTAC
92045668 CTGATCAATG
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
50 47 0.67
51 23 0.33
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (51 bp):
ACAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGGACAAATG
Found at i:92045683 original size:31 final size:31
Alignment explanation
Indices: 92045645--92045853 Score: 271
Period size: 31 Copynumber: 6.7 Consensus size: 31
92045635 AAATGACAAG
*
92045645 TGAAAAGTGGTAACTTCGGCTACCTGATCAA
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAA
* *
92045676 TGAAAAGTGGTAGCTTCGACTACCTGATCAG
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAA
*
92045707 TGAAAAGTGGTAGCTTCTGCTACCTGAT-AA
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAA
*
92045737 GTGAAAAGTGGTAGC-TCTTGCTACCTGATCAA
1 -TGAAAAGTGGTAGCTTC-GGCTACCTGATCAA
* * *
92045769 TGAAAAATGGTAGCTCCGACTACCTGATCAA
1 TGAAAAGTGGTAGCTTCGGCTACCTGATCAA
* *
92045800 TGAAAAATGGTAGC-TCTGGCTACCTGATCAG
1 TGAAAAGTGGTAGCTTC-GGCTACCTGATCAA
*
92045831 TGAATAGTGGTAGCTTCGGCTAC
1 TGAAAAGTGGTAGCTTCGGCTAC
92045854 AAGTGACAAG
Statistics
Matches: 157, Mismatches: 15, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
30 4 0.03
31 148 0.94
32 5 0.03
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (31 bp):
TGAAAAGTGGTAGCTTCGGCTACCTGATCAA
Found at i:92045747 original size:93 final size:93
Alignment explanation
Indices: 92045642--92045853 Score: 320
Period size: 93 Copynumber: 2.3 Consensus size: 93
92045632 GACAAATGAC
* * * *
92045642 AAGTGAAAAGTGGTAACTTCGGCTACCTGATCAATGAAAAGTGGTAGCTTCGACTACCTGATCAG
1 AAGTGAAAAGTGGTAGCTTCGGCTACCTGATCAATGAAAAATGGTAGCTCCGACTACCTGATCAA
*
92045707 TGAAAAGTGGTAGCTTCT-GCTACCTGAT
66 TGAAAAATGGTAGC-TCTGGCTACCTGAT
*
92045735 AAGTGAAAAGTGGTAGC-TCTTGCTACCTGATCAATGAAAAATGGTAGCTCCGACTACCTGATCA
1 AAGTGAAAAGTGGTAGCTTC-GGCTACCTGATCAATGAAAAATGGTAGCTCCGACTACCTGATCA
92045799 ATGAAAAATGGTAGCTCTGGCTACCTGAT
65 ATGAAAAATGGTAGCTCTGGCTACCTGAT
* *
92045828 CAGTGAATAGTGGTAGCTTCGGCTAC
1 AAGTGAAAAGTGGTAGCTTCGGCTAC
92045854 AAGTGACAAG
Statistics
Matches: 107, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
92 5 0.05
93 100 0.93
94 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (93 bp):
AAGTGAAAAGTGGTAGCTTCGGCTACCTGATCAATGAAAAATGGTAGCTCCGACTACCTGATCAA
TGAAAAATGGTAGCTCTGGCTACCTGAT
Found at i:92046047 original size:49 final size:48
Alignment explanation
Indices: 92045875--92046044 Score: 195
Period size: 47 Copynumber: 3.6 Consensus size: 48
92045865 GATTTCCGTA
* * * * *
92045875 TAAGACCATATCTGGGATATGGCATCG-GTGTGATATATG-CTACTGTA
1 TAAGACCATAGCTGGGATATGGCATCGAATGTGATATGTGATTAC-GTG
* * *
92045922 TAAGACCATATCTGGGATATGGCATC-AGTGAGATATGTGATT-CGTG
1 TAAGACCATAGCTGGGATATGGCATCGAATGTGATATGTGATTACGTG
*
92045968 TAAGACCATAGCTGGGCTATGGCATCGATATGTGATATGTGATTACGTG
1 TAAGACCATAGCTGGGATATGGCATCGA-ATGTGATATGTGATTACGTG
* *
92046017 TAAGACCATAGCTGGGCTATGACATCGA
1 TAAGACCATAGCTGGGATATGGCATCGA
92046045 TATATGAAGA
Statistics
Matches: 109, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
46 26 0.24
47 38 0.35
48 14 0.13
49 31 0.28
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.29
Consensus pattern (48 bp):
TAAGACCATAGCTGGGATATGGCATCGAATGTGATATGTGATTACGTG
Found at i:92046060 original size:42 final size:43
Alignment explanation
Indices: 92046014--92046096 Score: 123
Period size: 42 Copynumber: 2.0 Consensus size: 43
92046004 ATGTGATTAC
** *
92046014 GTGTAAGACCATAGCTGGGCTATGACATCGA-TATATGAAGAT
1 GTGTAAGACCATAGCTGAACTATGACATCGAGTAAATGAAGAT
*
92046056 GTGTAAGACCATAGTTGAACTATGACATCGAGTAAATGAAG
1 GTGTAAGACCATAGCTGAACTATGACATCGAGTAAATGAAG
92046097 TACTCAATTC
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 28 0.78
43 8 0.22
ACGTcount: A:0.36, C:0.13, G:0.25, T:0.25
Consensus pattern (43 bp):
GTGTAAGACCATAGCTGAACTATGACATCGAGTAAATGAAGAT
Found at i:92056642 original size:21 final size:23
Alignment explanation
Indices: 92056617--92056660 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
92056607 GACCCGCCCG
*
92056617 TATTAAT-TTTTTATAT-TATAT
1 TATTAATATTTTTAAATATATAT
*
92056638 TATTATTATTTTTAAATATATAT
1 TATTAATATTTTTAAATATATAT
92056661 AATACATCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 6 0.32
22 8 0.42
23 5 0.26
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (23 bp):
TATTAATATTTTTAAATATATAT
Found at i:92057378 original size:25 final size:26
Alignment explanation
Indices: 92057350--92057398 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
92057340 TTTGCATAAT
92057350 AACATAAGTTCACAGAA-TAACATGC
1 AACATAAGTTCACAGAATTAACATGC
** *
92057375 AACATGGGTTCACATAATTAACAT
1 AACATAAGTTCACAGAATTAACAT
92057399 ACATGGGTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 14 0.70
26 6 0.30
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.24
Consensus pattern (26 bp):
AACATAAGTTCACAGAATTAACATGC
Found at i:92058824 original size:17 final size:17
Alignment explanation
Indices: 92058802--92058840 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
92058792 TAATTAAGAA
92058802 AAAGGACTAAATTGAAT
1 AAAGGACTAAATTGAAT
*
92058819 AAAGGACTATATTGAAT
1 AAAGGACTAAATTGAAT
92058836 AAAGG
1 AAAGG
92058841 GTAAAAGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.51, C:0.05, G:0.21, T:0.23
Consensus pattern (17 bp):
AAAGGACTAAATTGAAT
Found at i:92059019 original size:14 final size:14
Alignment explanation
Indices: 92058987--92059031 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 14
92058977 GATTATCAAG
92058987 TATATTATTAAATTAAT
1 TATATTA-TAAA-T-AT
92059004 TATATTATAAATAT
1 TATATTATAAATAT
92059018 TATATTAATAAATA
1 TATATT-ATAAATA
92059032 AATTAAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 8 0.30
15 8 0.30
16 4 0.15
17 7 0.26
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
TATATTATAAATAT
Found at i:92059147 original size:13 final size:13
Alignment explanation
Indices: 92059111--92059167 Score: 54
Period size: 13 Copynumber: 4.7 Consensus size: 13
92059101 ACTTATAATT
92059111 AATTATTA-A-TA
1 AATTATTATATTA
92059122 AA-TATT-TATTTA
1 AATTATTATA-TTA
92059134 AATTATTATATTA
1 AATTATTATATTA
92059147 AATTATT-T-TTA
1 AATTATTATATTA
92059158 TAATTATTAT
1 -AATTATTAT
92059168 TAATATTATC
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
10 5 0.13
11 5 0.13
12 12 0.31
13 15 0.38
14 2 0.05
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
AATTATTATATTA
Found at i:92059166 original size:28 final size:28
Alignment explanation
Indices: 92059103--92059175 Score: 77
Period size: 26 Copynumber: 2.7 Consensus size: 28
92059093 TTTGTAATAC
92059103 TTATAATTAATTATTA-A-TAAATATTTA
1 TTATAATT-ATTATTATATTAAATATTTA
92059130 TT-TAA--ATTATTATATTAAATTATTT-
1 TTATAATTATTATTATATTAAA-TATTTA
92059155 TTATAATTATTATTAATATTA
1 TTATAATTATTATT-ATATTA
92059176 TCAAATAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
23 7 0.18
24 1 0.03
25 6 0.15
26 11 0.28
27 2 0.05
28 6 0.15
29 6 0.15
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (28 bp):
TTATAATTATTATTATATTAAATATTTA
Found at i:92059297 original size:151 final size:148
Alignment explanation
Indices: 92058989--92059297 Score: 316
Period size: 151 Copynumber: 2.1 Consensus size: 148
92058979 TTATCAAGTA
* *
92058989 TATTATTAAATTAATTATATTATAAATATTATATTAATAAATAAATTAAATAAAGACAAATGTAT
1 TATTATTAAATTAATTATATAATAAATATTATATTAATAAATAAATTAAATAAAGACAAATGTAG
*** * * * *
92059054 GGTGATGATTTGATACAAGTGTATTAATAAAAATATATATTTGTAATACTTATAATTAATTATTA
66 GGTGATGATAAAATACAAGTGTAATAATAAAAATATACAATTGTAATACATATAATTAATTATTA
*
92059119 ATAAATATTTATTTAAAT
131 ATAAATATTTATTTAAAC
* * * * * * *
92059137 TATTATATTAAATTATTTTTATAATTATTATTAATATT-ATCAAATAAATTGAATTATGACAAAT
1 TA-T-TATTAAATTAATTATATAATAAATATT-ATATTAAT-AAATAAATTAAATAAAGACAAAT
* * * * * *
92059201 GTAGGGTGATGATAAAATACATGTGTAATAATATGTAAGTATACAATTGTAATACATGTATTTGA
62 GTAGGGTGATGATAAAATACAAGTGTAATAATA--AAAATATACAATTGTAATACATATAATTAA
* *
92059266 -TATTAAATAGATATTTATTTTAAC
125 TTATT-AATAAATATTTATTTAAAC
92059290 TATTATTA
1 TATTATTA
92059298 TTATATTAAA
Statistics
Matches: 129, Mismatches: 25, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
148 2 0.02
149 1 0.01
150 24 0.19
151 57 0.44
152 5 0.04
153 40 0.31
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.44
Consensus pattern (148 bp):
TATTATTAAATTAATTATATAATAAATATTATATTAATAAATAAATTAAATAAAGACAAATGTAG
GGTGATGATAAAATACAAGTGTAATAATAAAAATATACAATTGTAATACATATAATTAATTATTA
ATAAATATTTATTTAAAC
Found at i:92060527 original size:18 final size:18
Alignment explanation
Indices: 92060470--92060529 Score: 65
Period size: 18 Copynumber: 3.6 Consensus size: 18
92060460 GTATTACTGG
92060470 ATTGAATAACTGATTGTT
1 ATTGAATAACTGATTGTT
* *
92060488 ATTG-AT---TGTTTGAT
1 ATTGAATAACTGATTGTT
*
92060502 ACTGAATAACTGATTGTT
1 ATTGAATAACTGATTGTT
92060520 ATTGAATAAC
1 ATTGAATAAC
92060530 AATAAACAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
14 9 0.28
15 2 0.06
17 2 0.06
18 19 0.59
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.43
Consensus pattern (18 bp):
ATTGAATAACTGATTGTT
Found at i:92062839 original size:526 final size:526
Alignment explanation
Indices: 92061847--92062897 Score: 2093
Period size: 526 Copynumber: 2.0 Consensus size: 526
92061837 TGCATTATAG
92061847 GTCCCTTAATGGTTGGTTTGAATTATGCATTTAAAGACTTATCTACGCTCTACACAGTTTGACAT
1 GTCCCTTAATGGTTGGTTTGAATTATGCATTTAAAGACTTATCTACGCTCTACACAGTTTGACAT
92061912 ACGGTTCTGTGCCCTCACACGGGCTAGTGATACGGCCGTGTGCTCCTTAGAATTTAATTAACATG
66 ACGGTTCTGTGCCCTCACACGGGCTAGTGATACGGCCGTGTGCTCCTTAGAATTTAATTAACATG
92061977 TACACCACACAGTTACAAAAATTTACATGGGTTGGCCACACGCCCGTTGATAACTTTTGAAAGGA
131 TACACCACACAGTTACAAAAATTTACATGGGTTGGCCACACGCCCGTTGATAACTTTTGAAAGGA
92062042 GTTACTGTAGCAGCCCGTTTTCAGTGAAATCAGAACAGTGGTTTTGGGATCACAAATCCAAGGTC
196 GTTACTGTAGCAGCCCGTTTTCAGTGAAATCAGAACAGTGGTTTTGGGATCACAAATCCAAGGTC
*
92062107 AGAAAATTTATTTTTTTTATTATTTTATTTCCTACAATATGATAGAAATACCGTATTAAAATTTC
261 AGAAAATTTATTTTTATTATTATTTTATTTCCTACAATATGATAGAAATACCGTATTAAAATTTC
92062172 GTTAAGAAATTTTACCATTTACATGTTCAGTTTATTATAAAGGACTAAATCACGTAAAGTGCAAA
326 GTTAAGAAATTTTACCATTTACATGTTCAGTTTATTATAAAGGACTAAATCACGTAAAGTGCAAA
92062237 AGTTGAGTTCTAATAACTAAAGGTATTAAATAGCTATGGAACTTAAAATTGGAGGTCCTTAAGTG
391 AGTTGAGTTCTAATAACTAAAGGTATTAAATAGCTATGGAACTTAAAATTGGAGGTCCTTAAGTG
92062302 GTAATTAGACCATTAGTATGTTAGTGGATGATAATGTCTTGGCAATTTTGTAATTATTAATGTTT
456 GTAATTAGACCATTAGTATGTTAGTGGATGATAATGTCTTGGCAATTTTGTAATTATTAATGTTT
92062367 TAAAAT
521 TAAAAT
92062373 GTCCCTTAATGGTTGGTTTGAATTATGCATTTAAAGACTTATCTACGCTCTACACAGTTTGACAT
1 GTCCCTTAATGGTTGGTTTGAATTATGCATTTAAAGACTTATCTACGCTCTACACAGTTTGACAT
92062438 ACGGTTCTGTGCCCTCACACGGGCTAGTGATACGGCCGTGTGCTCCTTAGAATTTAATTAACATG
66 ACGGTTCTGTGCCCTCACACGGGCTAGTGATACGGCCGTGTGCTCCTTAGAATTTAATTAACATG
92062503 TACACCACACAGTTACAAAAATTTACATGGGTTGGCCACACGCCCGTTGATAACTTTTGAAAGGA
131 TACACCACACAGTTACAAAAATTTACATGGGTTGGCCACACGCCCGTTGATAACTTTTGAAAGGA
92062568 GTTACTGTAGCAGCCCGTTTTCAGTGAAATCAGAACAGTGGTTTTGGGATCACAAATCCAAGGTC
196 GTTACTGTAGCAGCCCGTTTTCAGTGAAATCAGAACAGTGGTTTTGGGATCACAAATCCAAGGTC
92062633 AGAAAATTTATTTTTATTATTATTTTATTTCCTACAATATGATAGAAATACCGTATTAAAATTTC
261 AGAAAATTTATTTTTATTATTATTTTATTTCCTACAATATGATAGAAATACCGTATTAAAATTTC
92062698 GTTAAGAAATTTTACCATTTACATGTTCAGTTTATTATAAAGGACTAAATCACGTAAAGTGCAAA
326 GTTAAGAAATTTTACCATTTACATGTTCAGTTTATTATAAAGGACTAAATCACGTAAAGTGCAAA
92062763 AGTTGAGTTCTAATAACTAAAGGTATTAAATAGCTATGGAACTTAAAATTGGAGGTCCTTAAGTG
391 AGTTGAGTTCTAATAACTAAAGGTATTAAATAGCTATGGAACTTAAAATTGGAGGTCCTTAAGTG
92062828 GTAATTAGACCATTAGTATGTTAGTGGATGATAATGTCTTGGCAATTTTGTAATTATTAATGTTT
456 GTAATTAGACCATTAGTATGTTAGTGGATGATAATGTCTTGGCAATTTTGTAATTATTAATGTTT
92062893 TAAAA
521 TAAAA
92062898 GGTTAAATAG
Statistics
Matches: 524, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
526 524 1.00
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (526 bp):
GTCCCTTAATGGTTGGTTTGAATTATGCATTTAAAGACTTATCTACGCTCTACACAGTTTGACAT
ACGGTTCTGTGCCCTCACACGGGCTAGTGATACGGCCGTGTGCTCCTTAGAATTTAATTAACATG
TACACCACACAGTTACAAAAATTTACATGGGTTGGCCACACGCCCGTTGATAACTTTTGAAAGGA
GTTACTGTAGCAGCCCGTTTTCAGTGAAATCAGAACAGTGGTTTTGGGATCACAAATCCAAGGTC
AGAAAATTTATTTTTATTATTATTTTATTTCCTACAATATGATAGAAATACCGTATTAAAATTTC
GTTAAGAAATTTTACCATTTACATGTTCAGTTTATTATAAAGGACTAAATCACGTAAAGTGCAAA
AGTTGAGTTCTAATAACTAAAGGTATTAAATAGCTATGGAACTTAAAATTGGAGGTCCTTAAGTG
GTAATTAGACCATTAGTATGTTAGTGGATGATAATGTCTTGGCAATTTTGTAATTATTAATGTTT
TAAAAT
Found at i:92065169 original size:14 final size:14
Alignment explanation
Indices: 92065150--92065176 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
92065140 CACAAGTCAG
92065150 TGAGTCACACGGGT
1 TGAGTCACACGGGT
92065164 TGAGTCACACGGG
1 TGAGTCACACGGG
92065177 CACGGGCATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.22, G:0.37, T:0.19
Consensus pattern (14 bp):
TGAGTCACACGGGT
Found at i:92081189 original size:26 final size:25
Alignment explanation
Indices: 92081114--92081240 Score: 90
Period size: 24 Copynumber: 5.2 Consensus size: 25
92081104 AAAAATATAC
* *
92081114 ATATACATATAATAGTATTTAAGAAT
1 ATATACATA-AATAGTATATAAAAAT
**
92081140 ATATACATAAGAT-G-ATATGGAAAT
1 ATATACATAA-ATAGTATATAAAAAT
*
92081164 ATGTACATAGAATAGTATATAAAAAT
1 ATATACATA-AATAGTATATAAAAAT
*
92081190 ATA-AC-T-AATAATAT-TGAAAATAT
1 ATATACATAAATAGTATAT-AAAA-AT
92081213 ATATACAT-AATA-TATATAAAACAT
1 ATATACATAAATAGTATATAAAA-AT
92081237 ATAT
1 ATAT
92081241 GATATATACA
Statistics
Matches: 82, Mismatches: 10, Indels: 20
0.73 0.09 0.18
Matches are distributed among these distances:
21 1 0.01
22 11 0.13
23 5 0.06
24 32 0.39
25 12 0.15
26 21 0.26
ACGTcount: A:0.54, C:0.05, G:0.08, T:0.34
Consensus pattern (25 bp):
ATATACATAAATAGTATATAAAAAT
Found at i:92081238 original size:13 final size:14
Alignment explanation
Indices: 92081209--92081254 Score: 51
Period size: 13 Copynumber: 3.4 Consensus size: 14
92081199 AATATTGAAA
92081209 ATATATATACATA-
1 ATATATATACATAC
*
92081222 ATATATATA-AAAC
1 ATATATATACATAC
*
92081235 ATATATGATATATAC
1 ATATAT-ATACATAC
92081250 ATATA
1 ATATA
92081255 CATTAGCAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
12 2 0.07
13 15 0.54
14 3 0.11
15 8 0.29
ACGTcount: A:0.54, C:0.07, G:0.02, T:0.37
Consensus pattern (14 bp):
ATATATATACATAC
Found at i:92081561 original size:12 final size:13
Alignment explanation
Indices: 92081540--92081569 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
92081530 AATGTATAAT
92081540 ATATATATACATA
1 ATATATATACATA
92081553 ATATA-ATACATA
1 ATATATATACATA
92081565 ATATA
1 ATATA
92081570 GGCACATTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.71
13 5 0.29
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (13 bp):
ATATATATACATA
Found at i:92081661 original size:3 final size:3
Alignment explanation
Indices: 92081655--92081692 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
92081645 AACAACACAC
92081655 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
92081693 AAAAATTAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:92082780 original size:15 final size:16
Alignment explanation
Indices: 92082754--92082787 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
92082744 CAAGTGGGTT
92082754 TGGGTAATTGGGCTAA
1 TGGGTAATTGGGCTAA
*
92082770 TGGGT-ATTGGGCTGA
1 TGGGTAATTGGGCTAA
92082785 TGG
1 TGG
92082788 TTGTAAATGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.18, C:0.06, G:0.44, T:0.32
Consensus pattern (16 bp):
TGGGTAATTGGGCTAA
Found at i:92083679 original size:22 final size:20
Alignment explanation
Indices: 92083640--92083697 Score: 55
Period size: 21 Copynumber: 2.9 Consensus size: 20
92083630 GATTGTTAGT
* * *
92083640 TAAT-TTATAAATATTAAAT
1 TAATCTTATAATTTTTAAAA
92083659 TACATCTTATATATTTTTAAAA
1 TA-ATCTTATA-ATTTTTAAAA
*
92083681 TAATTTTATAATTTTTA
1 TAATCTTATAATTTTTA
92083698 TATATTTTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
19 2 0.06
20 9 0.28
21 12 0.38
22 9 0.28
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (20 bp):
TAATCTTATAATTTTTAAAA
Found at i:92083701 original size:11 final size:10
Alignment explanation
Indices: 92083665--92083706 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
92083655 AAATTACATC
92083665 TTATATATTT
1 TTATATATTT
* *
92083675 TTAAAATAATT
1 TT-ATATATTT
92083686 TTATA-ATTT
1 TTATATATTT
92083695 TTATATATTT
1 TTATATATTT
92083705 TT
1 TT
92083707 GGGGAAAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
9 8 0.31
10 10 0.38
11 8 0.31
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (10 bp):
TTATATATTT
Found at i:92087137 original size:103 final size:104
Alignment explanation
Indices: 92086893--92087158 Score: 426
Period size: 103 Copynumber: 2.6 Consensus size: 104
92086883 GTTGTACATA
** *
92086893 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
92086958 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* *
92086997 GAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
92087062 CTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
92087100 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
92087159 AATAACGGTT
Statistics
Matches: 149, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:92094489 original size:26 final size:26
Alignment explanation
Indices: 92094454--92094504 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
92094444 AATGTGAAAG
*
92094454 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
92094480 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
92094505 TTCATTGGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:92094591 original size:101 final size:103
Alignment explanation
Indices: 92094375--92094637 Score: 406
Period size: 102 Copynumber: 2.6 Consensus size: 103
92094365 GTTGTACATA
** *
92094375 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
92094440 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCC
*
92094478 GAGGGGTTGCTAAGTGCTGATTCCCCG-TTCATTGGTGGTGCTAAGTGCGATAT-CACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
92094541 CTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATT-CCCC
* * *
92094579 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
92094638 AATAACGGTT
Statistics
Matches: 146, Mismatches: 11, Indels: 6
0.90 0.07 0.04
Matches are distributed among these distances:
100 24 0.16
101 46 0.32
102 48 0.33
103 28 0.19
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (103 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCC
Found at i:92102023 original size:40 final size:39
Alignment explanation
Indices: 92101962--92102040 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 39
92101952 TTGATATGTG
*
92101962 TGATTCCCGAGGGTTGCCTAAGTGCTGATTTCCCTGTTC
1 TGATTCCCGAGGGTTGCCTAAGTGCTGATTTCCCGGTTC
92102001 TGATTCCCCGAGGGGTTG-CTAAGTGCTGATTTCCCGGTTC
1 TGATT-CCCGA-GGGTTGCCTAAGTGCTGATTTCCCGGTTC
92102041 ATTGGTGGTG
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
39 5 0.14
40 26 0.70
41 6 0.16
ACGTcount: A:0.13, C:0.25, G:0.28, T:0.34
Consensus pattern (39 bp):
TGATTCCCGAGGGTTGCCTAAGTGCTGATTTCCCGGTTC
Found at i:92102062 original size:141 final size:142
Alignment explanation
Indices: 92101870--92102134 Score: 383
Period size: 141 Copynumber: 1.9 Consensus size: 142
92101860 TTGTACATAA
** * * *
92101870 AGGGGTTGCTGCGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATACACCGTATCTC
** *
92101935 TGAAATGTGAAAGGGGGTTGATATGTG-TGATT-CCCGA-GGGTTGCCTAAGTGCTGATTTCCCT
66 TGAAAT-AAAAAGGGGGTTGATATGTGCTGATTCCCCAAGGGGTTG-CTAAGTGCTGATTTCCCT
92101997 GTTCTGATTCCCCG
129 GTTCTGATTCCCCG
* *
92102011 AGGGGTTGCTAAGTGCTGATTTCCCGGTTCATTGGTGGTGCTAAGTGCGATATACACCGTATCTC
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATACACCGTATCTC
*
92102076 TGAAATAAAAAGGGGGTTGCTATGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATT
66 TGAAATAAAAAGGGGGTTGATATGTGCTGATT-CCCCAAGGGGTTGCTAAGTGCTGATT
92102135 ATGATTCCTT
Statistics
Matches: 109, Mismatches: 11, Indels: 6
0.87 0.09 0.05
Matches are distributed among these distances:
140 17 0.16
141 69 0.63
143 17 0.16
144 6 0.06
ACGTcount: A:0.19, C:0.19, G:0.30, T:0.32
Consensus pattern (142 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATACACCGTATCTC
TGAAATAAAAAGGGGGTTGATATGTGCTGATTCCCCAAGGGGTTGCTAAGTGCTGATTTCCCTGT
TCTGATTCCCCG
Found at i:92102392 original size:21 final size:21
Alignment explanation
Indices: 92102358--92102398 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
92102348 AGACGAGCAA
* * *
92102358 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTAGAGTG
92102379 TACTCCAAAACAGGTAGAGT
1 TACTCCAAAACAGGTAGAGT
92102399 TTGAGCAGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTAGAGTG
Found at i:92108229 original size:38 final size:38
Alignment explanation
Indices: 92108141--92108243 Score: 125
Period size: 38 Copynumber: 2.7 Consensus size: 38
92108131 TTAAACTTGG
* * * * * *
92108141 ATATAATACCAACACTAGGCCTGCGAGATTTAACCCGG
1 ATATAATACTAGCACAAAGCCTGCGGGATTTAACCCGA
92108179 ATATAATACTAGCACAAAGCCTGCGGGATTTAACCCGA
1 ATATAATACTAGCACAAAGCCTGCGGGATTTAACCCGA
* * *
92108217 ATATAATTCTAGCATATAGCCTGCGGG
1 ATATAATACTAGCACAAAGCCTGCGGG
92108244 TCTTTAAGCC
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
38 56 1.00
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.23
Consensus pattern (38 bp):
ATATAATACTAGCACAAAGCCTGCGGGATTTAACCCGA
Found at i:92117463 original size:13 final size:13
Alignment explanation
Indices: 92117445--92117474 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
92117435 TCTTAATAAA
92117445 ATATTTAATATAT
1 ATATTTAATATAT
92117458 ATATTTAATATAT
1 ATATTTAATATAT
92117471 ATAT
1 ATAT
92117475 ATATATAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
ATATTTAATATAT
Found at i:92117934 original size:15 final size:15
Alignment explanation
Indices: 92117914--92117952 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
92117904 AATATTCAAC
92117914 TTTAATT-TGATTAAT
1 TTTAATTCT-ATTAAT
*
92117929 TTTAATTCTTTTAAT
1 TTTAATTCTATTAAT
92117944 TTTAATTCT
1 TTTAATTCT
92117953 TATACTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 21 0.95
16 1 0.05
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.64
Consensus pattern (15 bp):
TTTAATTCTATTAAT
Found at i:92117953 original size:15 final size:15
Alignment explanation
Indices: 92117924--92117953 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
92117914 TTTAATTTGA
92117924 TTAATTTTAATTCTT
1 TTAATTTTAATTCTT
92117939 TTAATTTTAATTCTT
1 TTAATTTTAATTCTT
92117954 ATACTTTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.67
Consensus pattern (15 bp):
TTAATTTTAATTCTT
Found at i:92117961 original size:15 final size:15
Alignment explanation
Indices: 92117925--92117961 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
92117915 TTAATTTGAT
*
92117925 TAATTTTAATTCTTT
1 TAATTTTAATTCTTA
92117940 TAATTTTAATTCTTA
1 TAATTTTAATTCTTA
*
92117955 TACTTTT
1 TAATTTT
92117962 TGAATTGGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.27, C:0.08, G:0.00, T:0.65
Consensus pattern (15 bp):
TAATTTTAATTCTTA
Found at i:92121546 original size:32 final size:32
Alignment explanation
Indices: 92121510--92121575 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
92121500 TCTTAATATT
*
92121510 ATTTAATTATAAAT-TTT-TTTAATATATTTTTA
1 ATTT-ATTAAAAATATTTATTTAA-ATATTTTTA
*
92121542 ATTTATTAAAAATATTTATTTTAATATTTTTA
1 ATTTATTAAAAATATTTATTTAAATATTTTTA
92121574 AT
1 AT
92121576 ATGTAATAGC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
31 8 0.27
32 18 0.60
33 4 0.13
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (32 bp):
ATTTATTAAAAATATTTATTTAAATATTTTTA
Found at i:92123115 original size:242 final size:244
Alignment explanation
Indices: 92122732--92123220 Score: 928
Period size: 242 Copynumber: 2.0 Consensus size: 244
92122722 TATTTTAGTT
*
92122732 TTAATTAGGCCCTGACAGTTGTTAAATTATACTCTGAGAACCGTGGCCGTTTTGGGAATAGGGTA
1 TTAATTAGGCCCTGACAGTTGTTAAATTATACTCTGAGAAACGTGGCCGTTTTGGGAATAGGGTA
* *
92122797 TTTTGCCTAGTGAGTCCCTCTAATTTTACGCGCGTTTTAAATAGGGCCTCAATTCAATTTTATTT
66 TTTTGCCCAGTGAGTCCCTCTAATTTTACGCGCATTTTAAATAGGGCCTCAATTCAATTTTATTT
92122862 CTTTGAAATTCGCCTTGTAATTTTGTTAAACTTTAAATTTAGTCCTATATTTATTATTCTATATA
131 CTTTGAAATTCGCCTTGTAATTTTGTTAAACTTTAAATTTAGTCCTATATTTATTATTCTATATA
92122927 TAT-T-TTTTATTATTTGTTTTATTTTAATTTTACTTTTATATTATATA
196 TATATATTTTATTATTTGTTTTATTTTAATTTTACTTTTATATTATATA
92122974 TTAATTAGGCCCTGACAGTTGTTAAATTATACTCTGAGAAACGTGGCCGTTTTGGGAATAGGGTA
1 TTAATTAGGCCCTGACAGTTGTTAAATTATACTCTGAGAAACGTGGCCGTTTTGGGAATAGGGTA
*
92123039 TTTTGCCCAGTGAGTCCCTCTAATTTTACGCGCATTTTAAATAGGGCCTCAATTCAGTTTTATTT
66 TTTTGCCCAGTGAGTCCCTCTAATTTTACGCGCATTTTAAATAGGGCCTCAATTCAATTTTATTT
92123104 CTTTGAAATTCGCCTTGTAATTTTGTTAAACTTTAAATTTAGTCCTATATTTATTATTCTATATA
131 CTTTGAAATTCGCCTTGTAATTTTGTTAAACTTTAAATTTAGTCCTATATTTATTATTCTATATA
92123169 TATATATTTTATTATTTGTTTTATTTTAATTTTACTTTTATATTATATA
196 TATATATTTTATTATTTGTTTTATTTTAATTTTACTTTTATATTATATA
92123218 TTA
1 TTA
92123221 TAAAATTATT
Statistics
Matches: 241, Mismatches: 4, Indels: 2
0.98 0.02 0.01
Matches are distributed among these distances:
242 194 0.80
243 1 0.00
244 46 0.19
ACGTcount: A:0.26, C:0.13, G:0.13, T:0.47
Consensus pattern (244 bp):
TTAATTAGGCCCTGACAGTTGTTAAATTATACTCTGAGAAACGTGGCCGTTTTGGGAATAGGGTA
TTTTGCCCAGTGAGTCCCTCTAATTTTACGCGCATTTTAAATAGGGCCTCAATTCAATTTTATTT
CTTTGAAATTCGCCTTGTAATTTTGTTAAACTTTAAATTTAGTCCTATATTTATTATTCTATATA
TATATATTTTATTATTTGTTTTATTTTAATTTTACTTTTATATTATATA
Found at i:92123237 original size:16 final size:17
Alignment explanation
Indices: 92123216--92123256 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
92123206 TTATATTATA
92123216 TATTATAA-AATTATTT
1 TATTATAAGAATTATTT
*
92123232 TATTATAAGTATTATTT
1 TATTATAAGAATTATTT
92123249 TAATTATA
1 T-ATTATA
92123257 TATTATTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 8 0.36
17 8 0.36
18 6 0.27
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.56
Consensus pattern (17 bp):
TATTATAAGAATTATTT
Found at i:92123262 original size:16 final size:16
Alignment explanation
Indices: 92123225--92123302 Score: 59
Period size: 16 Copynumber: 4.6 Consensus size: 16
92123215 ATATTATAAA
92123225 ATTATTTT-ATTATAAGT
1 ATTATTTTAATTAT-A-T
92123242 ATTATTTTAATTATAT
1 ATTATTTTAATTATAT
*
92123258 ATTATTATTACTTATTATGT
1 ATTATT-TTA---ATTATAT
** *
92123278 ATTATTTTTCTTAAAT
1 ATTATTTTAATTATAT
92123294 ATTATTTTA
1 ATTATTTTA
92123303 CATATCTTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
16 19 0.38
17 12 0.24
18 5 0.10
19 2 0.04
20 12 0.24
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.62
Consensus pattern (16 bp):
ATTATTTTAATTATAT
Found at i:92123267 original size:54 final size:51
Alignment explanation
Indices: 92123149--92123275 Score: 125
Period size: 54 Copynumber: 2.4 Consensus size: 51
92123139 AATTTAGTCC
* * ** *
92123149 TATATTTATTATTCTATA-TATATATATTTTATTATTTGTTTTATTTTAAT
1 TATATTTATTATTATATATTATAAATATTTTATTATAAGTATTATTTTAAT
*
92123199 TTTACTTT-TATATTATATATTATAAAATTATTTTATTATAAGTATTATTTTAAT
1 TATA-TTTAT-TATTATATATTAT-AAA-TATTTTATTATAAGTATTATTTTAAT
92123253 TATATATTATTATTACT-TATTAT
1 TATAT-TTATTATTA-TATATTAT
92123276 GTATTATTTT
Statistics
Matches: 62, Mismatches: 7, Indels: 12
0.77 0.09 0.15
Matches are distributed among these distances:
50 4 0.06
51 11 0.18
52 3 0.05
53 3 0.05
54 39 0.63
55 2 0.03
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (51 bp):
TATATTTATTATTATATATTATAAATATTTTATTATAAGTATTATTTTAAT
Found at i:92123274 original size:20 final size:18
Alignment explanation
Indices: 92123149--92123283 Score: 72
Period size: 17 Copynumber: 7.6 Consensus size: 18
92123139 AATTTAGTCC
*
92123149 TATAT-TTATTATTCTA-
1 TATATATTATTATTTTAT
92123165 TATATA-TA-TATTTTAT
1 TATATATTATTATTTTAT
* *
92123181 TATTTGTT-TTATTTTAAT
1 TATATATTATTATTTT-AT
*
92123199 T-T-TACTT-TTATATTAT
1 TATATA-TTATTATTTTAT
**
92123215 ATATTATAAAATTATTTTAT
1 -TA-TATATTATTATTTTAT
*
92123235 TATA-AGTATTATTTTAAT
1 TATATATTATTATTTT-AT
92123253 TATATATTATTATTACTTAT
1 TATATATTATTATT--TTAT
*
92123273 TATGTATTATT
1 TATATATTATT
92123284 TTTCTTAAAT
Statistics
Matches: 92, Mismatches: 12, Indels: 26
0.71 0.09 0.20
Matches are distributed among these distances:
15 6 0.07
16 14 0.15
17 26 0.28
18 11 0.12
19 11 0.12
20 22 0.24
21 2 0.02
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (18 bp):
TATATATTATTATTTTAT
Found at i:92123280 original size:36 final size:34
Alignment explanation
Indices: 92123221--92123303 Score: 98
Period size: 36 Copynumber: 2.4 Consensus size: 34
92123211 TTATATATTA
92123221 TAAA-ATTATTTTA-TTATAAGTATTATTTTAAT
1 TAAATATTATTTTACTTATAAGTATTATTTTAAT
* * **
92123253 TATATATTATTATTACTTATTATGTATTATTTTTCT
1 TAAATATTATT-TTACTTA-TAAGTATTATTTTAAT
92123289 TAAATATTATTTTAC
1 TAAATATTATTTTAC
92123304 ATATCTTTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
32 3 0.07
33 6 0.14
34 3 0.07
35 7 0.17
36 23 0.55
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (34 bp):
TAAATATTATTTTACTTATAAGTATTATTTTAAT
Found at i:92123282 original size:10 final size:9
Alignment explanation
Indices: 92123225--92123283 Score: 50
Period size: 10 Copynumber: 6.3 Consensus size: 9
92123215 ATATTATAAA
92123225 ATTATT-TT
1 ATTATTATT
* *
92123233 ATTATAAGT
1 ATTATTATT
92123242 ATTATT-TT
1 ATTATTATT
92123250 AATTATATATT
1 -ATTAT-TATT
92123261 ATTATTACTT
1 ATTATTA-TT
92123271 ATTATGTATT
1 ATTAT-TATT
92123281 ATT
1 ATT
92123284 TTTCTTAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
8 6 0.15
9 13 0.32
10 18 0.44
11 4 0.10
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (9 bp):
ATTATTATT
Found at i:92123299 original size:3 final size:3
Alignment explanation
Indices: 92123225--92123283 Score: 50
Period size: 3 Copynumber: 19.0 Consensus size: 3
92123215 ATATTATAAA
* *
92123225 ATT ATT -TT ATT ATA AGT ATT ATT -TT AATT ATAT ATT ATT ATT ACTT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT AT-T ATT ATT ATT A-TT
92123271 ATT ATGT ATT ATT
1 ATT AT-T ATT ATT
92123284 TTTCTTAAAT
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
2 4 0.09
3 31 0.67
4 11 0.24
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (3 bp):
ATT
Found at i:92123348 original size:29 final size:29
Alignment explanation
Indices: 92123296--92123356 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
92123286 TCTTAAATAT
* *
92123296 TATTTTACATATCTTTTATATATT-ATTA
1 TATTTTACATATATTATATATATTAATTA
*
92123324 TATTTTCACATATATTATATTTATTAATTA
1 TATTTT-ACATATATTATATATATTAATTA
92123354 TAT
1 TAT
92123357 ATATATTGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 6 0.21
29 15 0.54
30 7 0.25
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (29 bp):
TATTTTACATATATTATATATATTAATTA
Found at i:92123450 original size:10 final size:9
Alignment explanation
Indices: 92123435--92123476 Score: 50
Period size: 10 Copynumber: 4.6 Consensus size: 9
92123425 TTATATAATC
92123435 TTTATTATGT
1 TTTATTAT-T
92123445 TTTATT-TT
1 TTTATTATT
*
92123453 TATATTATT
1 TTTATTATT
92123462 TATTATTATT
1 T-TTATTATT
92123472 TTTAT
1 TTTAT
92123477 ATATGTTATG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
8 6 0.21
9 8 0.29
10 14 0.50
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (9 bp):
TTTATTATT
Found at i:92123460 original size:18 final size:20
Alignment explanation
Indices: 92123437--92123485 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 20
92123427 ATATAATCTT
92123437 TATTATGTT-TTATT-TTTA
1 TATTATGTTATTATTATTTA
*
92123455 TATTAT-TTATTATTATTTT
1 TATTATGTTATTATTATTTA
92123474 TATATATGTTAT
1 TAT-TATGTTAT
92123486 GTATATCATG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 2 0.08
18 11 0.42
19 6 0.23
20 3 0.12
21 4 0.15
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (20 bp):
TATTATGTTATTATTATTTA
Found at i:92123460 original size:21 final size:21
Alignment explanation
Indices: 92123436--92123489 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
92123426 TATATAATCT
*
92123436 TTATTATGTTTTATTTTTATA
1 TTATTATGTATTATTTTTATA
92123457 TTATTTAT-TATTATTTTTATA
1 TTA-TTATGTATTATTTTTATA
*
92123478 TATGTTATGTAT
1 T-TATTATGTAT
92123490 ATCATGTATC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
21 20 0.71
22 8 0.29
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.69
Consensus pattern (21 bp):
TTATTATGTATTATTTTTATA
Found at i:92127236 original size:12 final size:12
Alignment explanation
Indices: 92127202--92127246 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
92127192 TCAAAGGTTT
92127202 GAGCAGTTGCAA
1 GAGCAGTTGCAA
* *
92127214 AAGGA-TATGCAA
1 GAGCAGT-TGCAA
92127226 GAGCAGTTGCAA
1 GAGCAGTTGCAA
92127238 GAGCAGTTG
1 GAGCAGTTG
92127247 GCTAAGATGC
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
11 1 0.04
12 25 0.93
13 1 0.04
ACGTcount: A:0.36, C:0.13, G:0.33, T:0.18
Consensus pattern (12 bp):
GAGCAGTTGCAA
Found at i:92135259 original size:119 final size:119
Alignment explanation
Indices: 92135044--92135635 Score: 1006
Period size: 119 Copynumber: 5.0 Consensus size: 119
92135034 AATTGAAGAC
** * *
92135044 AGCAGATCTAGA-CTTCAGACATTTATGCTGAAGCAGATCCAAGATGATTTGGTTTTCTTGTGTT
1 AGCAGATCTA-ACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTT
* *
92135108 TACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAAATGTTCTCAAATAT
65 TACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATAT
*
92135163 AGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTATTT
1 AGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
*
92135228 ACAAGGAACAAATCGAGGACATAGCAAATTTGACTCTCAGACGTTCTCAAATAT
66 ACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATAT
92135282 AGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
1 AGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
* *
92135347 ACAAGGAACAAATCGAGGACATAGCAAATTTGACTCTCAGACGTTCTCAAATAC
66 ACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATAT
*
92135401 AACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
1 AGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
* *
92135466 ACAAGAAACAAATCGGGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATAT
66 ACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATAT
*
92135520 AGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTCT
1 AGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
* * * *
92135585 ACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAA
66 ACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
92135636 CAAACTCAAG
Statistics
Matches: 449, Mismatches: 23, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
118 1 0.00
119 448 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.30
Consensus pattern (119 bp):
AGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTT
ACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATAT
Found at i:92137241 original size:17 final size:16
Alignment explanation
Indices: 92137219--92137276 Score: 66
Period size: 17 Copynumber: 3.5 Consensus size: 16
92137209 ATTTTATAAA
92137219 ATTATTTTATTATAAGT
1 ATTATTTTATTAT-AGT
92137236 ATTATTTTAATTATA-T
1 ATTATTTT-ATTATAGT
92137252 ATTATTACTTATTAT-GT
1 ATTATT--TTATTATAGT
92137269 ATTATTTT
1 ATTATTTT
92137277 TCTTAAATAT
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
15 2 0.05
16 7 0.19
17 21 0.57
18 7 0.19
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (16 bp):
ATTATTTTATTATAGT
Found at i:92137271 original size:33 final size:34
Alignment explanation
Indices: 92137194--92137290 Score: 93
Period size: 33 Copynumber: 3.1 Consensus size: 34
92137184 TATTTTAATT
*
92137194 TTACTT-TTATATTA-TATTTT-A-TAAA-ATTA
1 TTACTTATTATAGTATTATTTTAATTAAATATTA
*
92137223 TT--TTATTATAAGTATTATTTTAATTATATATTA
1 TTACTTATTAT-AGTATTATTTTAATTAAATATTA
**
92137256 TTACTTATTAT-GTATTATTTTTCTTAAATATTA
1 TTACTTATTATAGTATTATTTTAATTAAATATTA
92137289 TT
1 TT
92137291 TTACATCTCT
Statistics
Matches: 55, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
27 2 0.04
28 4 0.07
29 5 0.09
30 6 0.11
31 1 0.02
32 3 0.05
33 27 0.49
35 7 0.13
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (34 bp):
TTACTTATTATAGTATTATTTTAATTAAATATTA
Found at i:92137441 original size:10 final size:9
Alignment explanation
Indices: 92137426--92137467 Score: 50
Period size: 10 Copynumber: 4.6 Consensus size: 9
92137416 TTATATAATC
92137426 TTTATTATGT
1 TTTATTAT-T
92137436 TTTATT-TT
1 TTTATTATT
*
92137444 TATATTATT
1 TTTATTATT
92137453 TATTATTATT
1 T-TTATTATT
92137463 TTTAT
1 TTTAT
92137468 ATATGTTATG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
8 6 0.21
9 8 0.29
10 14 0.50
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.74
Consensus pattern (9 bp):
TTTATTATT
Found at i:92137451 original size:18 final size:20
Alignment explanation
Indices: 92137428--92137476 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 20
92137418 ATATAATCTT
92137428 TATTATGTT-TTATT-TTTA
1 TATTATGTTATTATTATTTA
*
92137446 TATTAT-TTATTATTATTTT
1 TATTATGTTATTATTATTTA
92137465 TATATATGTTAT
1 TAT-TATGTTAT
92137477 GTATATCATG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
17 2 0.08
18 11 0.42
19 6 0.23
20 3 0.12
21 4 0.15
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (20 bp):
TATTATGTTATTATTATTTA
Found at i:92137451 original size:21 final size:21
Alignment explanation
Indices: 92137427--92137480 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
92137417 TATATAATCT
*
92137427 TTATTATGTTTTATTTTTATA
1 TTATTATGTATTATTTTTATA
92137448 TTATTTAT-TATTATTTTTATA
1 TTA-TTATGTATTATTTTTATA
*
92137469 TATGTTATGTAT
1 T-TATTATGTAT
92137481 ATCATGTATC
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
21 20 0.71
22 8 0.29
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.69
Consensus pattern (21 bp):
TTATTATGTATTATTTTTATA
Found at i:92146092 original size:47 final size:46
Alignment explanation
Indices: 92146041--92146133 Score: 114
Period size: 47 Copynumber: 2.0 Consensus size: 46
92146031 GAATTATGAG
* *
92146041 GCATCCGAACTCGTTCAGTTGCGATCTGAGTTCACCTATGGATGCAA
1 GCATCCAAACTCGTTCAGTTGCGATCCGAGTTCA-CTATGGATGCAA
* * * * *
92146088 GCATCCAAACTTGTTGAGTTGTGTTCCGAGTTCATTATGGATGCAA
1 GCATCCAAACTCGTTCAGTTGCGATCCGAGTTCACTATGGATGCAA
92146134 ACACCCGAGC
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
46 11 0.28
47 28 0.72
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.31
Consensus pattern (46 bp):
GCATCCAAACTCGTTCAGTTGCGATCCGAGTTCACTATGGATGCAA
Found at i:92146147 original size:46 final size:46
Alignment explanation
Indices: 92146068--92146173 Score: 158
Period size: 46 Copynumber: 2.3 Consensus size: 46
92146058 GTTGCGATCT
* * *
92146068 GAGTTCACCTATGGATGCAAGCATCCAAACTTGTTGAGTTGTGTTCC
1 GAGTTCA-TTATGGATGCAAACACCCAAACTTGTTGAGTTGTGTTCC
* *
92146115 GAGTTCATTATGGATGCAAACACCCGAGCTTGTTGAGTTGTGTTCC
1 GAGTTCATTATGGATGCAAACACCCAAACTTGTTGAGTTGTGTTCC
92146161 GAGTTCATTATGG
1 GAGTTCATTATGG
92146174 GTGAGATTAT
Statistics
Matches: 54, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
46 47 0.87
47 7 0.13
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (46 bp):
GAGTTCATTATGGATGCAAACACCCAAACTTGTTGAGTTGTGTTCC
Found at i:92149783 original size:5 final size:5
Alignment explanation
Indices: 92149770--92149800 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
92149760 TGAGCATTCG
*
92149770 ATCGG ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA A
92149801 AATTTTCGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.39, C:0.19, G:0.23, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:92150102 original size:14 final size:14
Alignment explanation
Indices: 92150069--92150105 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
92150059 ACATCAACCC
*
92150069 AAATA-AACAACAA
1 AAATACAACAAAAA
92150082 AAA-ACAACAAAAA
1 AAATACAACAAAAA
92150095 AAATACAACAA
1 AAATACAACAA
92150106 GATTATAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
12 1 0.05
13 13 0.62
14 7 0.33
ACGTcount: A:0.78, C:0.16, G:0.00, T:0.05
Consensus pattern (14 bp):
AAATACAACAAAAA
Found at i:92150563 original size:219 final size:211
Alignment explanation
Indices: 92150162--92150563 Score: 608
Period size: 219 Copynumber: 1.9 Consensus size: 211
92150152 GTCGAAGTAA
* *
92150162 ACAACGACATTATAATAAAAAAACATAAGAAAAAGTCCAAAATACAATAGAAACTTACACCACTC
1 ACAACAACATTATAATAAAAAAACATAAGAAAAAGTCCAAAATACAATAGAAACCTACACCACTC
* * *
92150227 CAAACAAAAAAAAAACACAACAAAAGTTCAATTAACCAACGACAATAACAAACCAAACCAAACTA
66 CAAAAAAAAAAAAAACACAACAAAAGCTCAATTAACCAACAACAATAACAAACCAAACCAAACTA
*
92150292 ATAACAATAACACATAAGCTCAAAAACCATTATAGAATAGTTTAAGTTTCTTCATGAGTCCAAAT
131 ATAACAATAACACATAAGCTCAAAAACCATTATAGAATAGTTTAACTTTCTTCATGAGTCCAAAT
92150357 AAACAACAAAAACAAT
196 AAACAACAAAAACAAT
*
92150373 ACAACAACATTGTAATTAAAAAAAACATAAGCAAAAA-TCCAAAATACAATAGAAACCTACACCA
1 ACAACAACATTATAA-T-AAAAAAACATAAG-AAAAAGTCCAAAATACAATAGAAACCTACACCA
* *
92150437 GTCCAAAAAAAAAAAAGAACACAACAAAAGCTCAATTATCCAACAACAATAACAAACCAAACTAA
63 CTCCAAAAAAAAAAAA-AACACAACAAAAGCTCAATTAACCAACAACAATAACAAA-C---C-AA
* * *
92150502 ACCAAACTAATAACAATAACACATCAGTTCCAAAACCATTATAGAATAGTTTAACTTTCTTC
122 ACCAAACTAATAACAATAACACATAAGCTCAAAAACCATTATAGAATAGTTTAACTTTCTTC
92150564 TTGTGCTTCA
Statistics
Matches: 170, Mismatches: 12, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
211 13 0.08
212 1 0.01
213 53 0.31
214 41 0.24
215 1 0.01
218 1 0.01
219 60 0.35
ACGTcount: A:0.56, C:0.21, G:0.05, T:0.18
Consensus pattern (211 bp):
ACAACAACATTATAATAAAAAAACATAAGAAAAAGTCCAAAATACAATAGAAACCTACACCACTC
CAAAAAAAAAAAAAACACAACAAAAGCTCAATTAACCAACAACAATAACAAACCAAACCAAACTA
ATAACAATAACACATAAGCTCAAAAACCATTATAGAATAGTTTAACTTTCTTCATGAGTCCAAAT
AAACAACAAAAACAAT
Found at i:92152983 original size:30 final size:30
Alignment explanation
Indices: 92152948--92153014 Score: 125
Period size: 30 Copynumber: 2.2 Consensus size: 30
92152938 GTTAAATTAA
*
92152948 AAATTAATTAATATAATAGTATAATAGCAT
1 AAATTAATTAATATAATAGTACAATAGCAT
92152978 AAATTAATTAATATAATAGTACAATAGCAT
1 AAATTAATTAATATAATAGTACAATAGCAT
92153008 AAATTAA
1 AAATTAA
92153015 AAATAGATAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.34
Consensus pattern (30 bp):
AAATTAATTAATATAATAGTACAATAGCAT
Found at i:92155113 original size:9 final size:9
Alignment explanation
Indices: 92155088--92155133 Score: 56
Period size: 9 Copynumber: 5.0 Consensus size: 9
92155078 TCGAAAAAAA
92155088 AATTCGAGTT
1 AATTCGA-TT
*
92155098 GATTCGATT
1 AATTCGATT
92155107 AATTCGATT
1 AATTCGATT
*
92155116 AACTCGATT
1 AATTCGATT
*
92155125 AACTCGATT
1 AATTCGATT
92155134 CGAATAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
9 27 0.82
10 6 0.18
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.39
Consensus pattern (9 bp):
AATTCGATT
Found at i:92155177 original size:8 final size:9
Alignment explanation
Indices: 92155156--92155182 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
92155146 AATTCAAATT
92155156 TTTTTTCGA
1 TTTTTTCGA
92155165 TTTTTTCGA
1 TTTTTTCGA
92155174 TTTTTTCGA
1 TTTTTTCGA
92155183 ATCGAATCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.11, G:0.11, T:0.67
Consensus pattern (9 bp):
TTTTTTCGA
Found at i:92167348 original size:20 final size:20
Alignment explanation
Indices: 92167323--92167360 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
92167313 GAGGAAGGTA
92167323 AGTAGAATGATATTATCCTG
1 AGTAGAATGATATTATCCTG
92167343 AGTAGAATGATATTATCC
1 AGTAGAATGATATTATCC
92167361 CAACTAGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.34
Consensus pattern (20 bp):
AGTAGAATGATATTATCCTG
Found at i:92167368 original size:20 final size:20
Alignment explanation
Indices: 92167325--92167369 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
92167315 GGAAGGTAAG
** *
92167325 TAGAATGATATTATCCTGAG
1 TAGAATGATATTATCCCAAC
92167345 TAGAATGATATTATCCCAAC
1 TAGAATGATATTATCCCAAC
92167365 TAGAA
1 TAGAA
92167370 GATGAGCATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.31
Consensus pattern (20 bp):
TAGAATGATATTATCCCAAC
Found at i:92170992 original size:5 final size:6
Alignment explanation
Indices: 92170978--92171002 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
92170968 GTTTATATAG
92170978 AAAATA AAAATA AAAATA AAAATA A
1 AAAATA AAAATA AAAATA AAAATA A
92171003 TATAATTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:92181495 original size:37 final size:37
Alignment explanation
Indices: 92181437--92181550 Score: 201
Period size: 37 Copynumber: 3.1 Consensus size: 37
92181427 CGAATAGTTC
* * *
92181437 CCACACGTAGTTATCGAGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
92181474 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
92181511 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
92181548 CCA
1 CCA
92181551 AGTTTCATGT
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 74 1.00
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
Found at i:92181741 original size:48 final size:48
Alignment explanation
Indices: 92181680--92182174 Score: 909
Period size: 48 Copynumber: 10.3 Consensus size: 48
92181670 ATATACACAC
* *
92181680 ATCTCCTACATATTTCACACTAGCCATTCGGCTTTACCACGTATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACGTATACAT
* *
92181728 ATCTCATATATATTTCACATTATCCATTCGGCTTTACCACGTATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACGTATACAT
*
92181776 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACTACGTATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACGTATACAT
*
92181824 ATCTCATACATATTTGACATTAGCCATTCGGCTTTACCACGTATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACGTATACAT
*
92181872 ATCTCATACATATTTGACATTAGCCATTCGGCTTTACCACGTATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACGTATACAT
92181920 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACGTATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACGTATACAT
92181968 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACGTATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACGTATACAT
92182016 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACGTATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACGTATACAT
92182064 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACGTATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACGTATACAT
*
92182112 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACGTATACAT
*
92182160 ATCTCATATATATTT
1 ATCTCATACATATTT
92182175 ATCTTGTACA
Statistics
Matches: 435, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 435 1.00
ACGTcount: A:0.29, C:0.26, G:0.08, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACGTATACAT
Found at i:92185445 original size:40 final size:40
Alignment explanation
Indices: 92185412--92185680 Score: 484
Period size: 40 Copynumber: 6.7 Consensus size: 40
92185402 CCAGCATAAT
* *
92185412 TGCTCTTCGGGACCTAGCCCGGATATAATACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
92185452 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
92185492 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
92185532 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
*
92185572 TGCTCTTCGGGACTTAGCCCGGACATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
*
92185612 TGCTCTTCGGGACTTAGCCCGGACATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
* *
92185652 TGCTCTTTGGGACTTAGCCCGGACATAAC
1 TGCTCTTCGGGACTTAGCCCGGATATAAC
92185681 TCTCAATTCT
Statistics
Matches: 225, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 225 1.00
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.20
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATAACACCAGCACGAA
Found at i:92205203 original size:19 final size:19
Alignment explanation
Indices: 92205175--92205213 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
92205165 AGAGTGAAAG
92205175 AAACGAG-AAATGGGCCAA
1 AAACGAGAAAATGGGCCAA
92205193 AAACGGAGAAAATGGGCCAA
1 AAAC-GAGAAAATGGGCCAA
92205213 A
1 A
92205214 GTACGAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.21
19 3 0.16
20 12 0.63
ACGTcount: A:0.51, C:0.15, G:0.28, T:0.05
Consensus pattern (19 bp):
AAACGAGAAAATGGGCCAA
Found at i:92206703 original size:43 final size:43
Alignment explanation
Indices: 92206642--92206727 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
92206632 GTTACATGAA
* *
92206642 TCGCATCTATTATGAACTCAGACCTCTCAACAAGCTCGGATGC
1 TCGCATCCATAATGAACTCAGACCTCTCAACAAGCTCGGATGC
* **
92206685 TCGCATCCATAATGAACTCTGACCTCTCAATGAGCTCGGATGC
1 TCGCATCCATAATGAACTCAGACCTCTCAACAAGCTCGGATGC
92206728 CACATATCTC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (43 bp):
TCGCATCCATAATGAACTCAGACCTCTCAACAAGCTCGGATGC
Found at i:92206987 original size:23 final size:24
Alignment explanation
Indices: 92206937--92206988 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
92206927 AGTTCATCAT
*
92206937 TACAATAAAACATTTATTACAGTA
1 TACAATAAAACATTTATAACAGTA
*
92206961 TACATTAAAACA-TTATAACA-TA
1 TACAATAAAACATTTATAACAGTA
92206983 CTACAA
1 -TACAA
92206989 CACCACATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
22 2 0.08
23 11 0.46
24 11 0.46
ACGTcount: A:0.52, C:0.15, G:0.02, T:0.31
Consensus pattern (24 bp):
TACAATAAAACATTTATAACAGTA
Found at i:92208981 original size:21 final size:21
Alignment explanation
Indices: 92208927--92208981 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
92208917 TTAAAAATAG
*
92208927 ATATTTATTTTATTTTATTTTA
1 ATATTTA-TTAATTTTATTTTA
* *
92208949 ATATTTAATAATTTTATTTTT
1 ATATTTATTAATTTTATTTTA
*
92208970 TTATTTATTAAT
1 ATATTTATTAAT
92208982 ATTTTACATA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 21 0.75
22 7 0.25
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (21 bp):
ATATTTATTAATTTTATTTTA
Found at i:92209823 original size:23 final size:23
Alignment explanation
Indices: 92209804--92209852 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
92209794 TCTAAATTTT
92209804 AAAATT-TTAAAAATAAAAATAC
1 AAAATTCTTAAAAATAAAAATAC
*
92209826 AAAATTCTTAAAAATAAAAAGAC
1 AAAATTCTTAAAAATAAAAATAC
92209849 AAAA
1 AAAA
92209853 CTAAATTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 6 0.24
23 19 0.76
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.22
Consensus pattern (23 bp):
AAAATTCTTAAAAATAAAAATAC
Found at i:92212286 original size:26 final size:27
Alignment explanation
Indices: 92212257--92212313 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 27
92212247 TACCCGAAAA
92212257 TATGAGGATATAC-AAAAAAATGTGAG
1 TATGAGGATATACAAAAAAAATGTGAG
92212283 TATGAGGATATACAAAAAAAAATGTGAG
1 TATGAGGATATAC-AAAAAAAATGTGAG
92212311 TAT
1 TAT
92212314 ACCAAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 13 0.45
28 16 0.55
ACGTcount: A:0.51, C:0.04, G:0.21, T:0.25
Consensus pattern (27 bp):
TATGAGGATATACAAAAAAAATGTGAG
Found at i:92219102 original size:43 final size:42
Alignment explanation
Indices: 92219012--92219170 Score: 147
Period size: 43 Copynumber: 3.7 Consensus size: 42
92219002 TGTCGAGATG
* * * *
92219012 TGATTACATGTAAGACCATGTTTGAGACATTGGTATTGTATGG
1 TGATTACATGTAAGACCATGTTTGAGATATTGGAATCGTAT-A
* * *
92219055 TGATTACGTGTAAGACTATGTTTGAGATATTGGCATCGTTATA
1 TGATTACATGTAAGACCATGTTTGAGATATTGGAATCG-TATA
* * * * * *
92219098 TGATTTCGTATAAGACTATGTTTGGGATATTGAAATCGATATA
1 TGATTACATGTAAGACCATGTTTGAGATATTGGAATCG-TATA
* * *
92219141 TGATAACATGTAAGACCATATCTGAGATAT
1 TGATTACATGTAAGACCATGTTTGAGATAT
92219171 GAAATTGTAT
Statistics
Matches: 95, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
43 92 0.97
44 3 0.03
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.37
Consensus pattern (42 bp):
TGATTACATGTAAGACCATGTTTGAGATATTGGAATCGTATA
Found at i:92225392 original size:61 final size:61
Alignment explanation
Indices: 92225311--92225429 Score: 184
Period size: 61 Copynumber: 2.0 Consensus size: 61
92225301 TGATTATATG
* * * *
92225311 AATTAGTTATTGTTGTTAAAATTTTTGTTTTTTTAATAGATTATTGATACAAAAATTAGTA
1 AATTAATTATCGTTGTTAAAATTTTTATTTTTTTAATAGATTACTGATACAAAAATTAGTA
* *
92225372 AATTAATTATCGTTGTTAAAATTTTTATTTTTTTAATAGATTACTGATATAATAATTA
1 AATTAATTATCGTTGTTAAAATTTTTATTTTTTTAATAGATTACTGATACAAAAATTA
92225430 ATCCATTAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
61 52 1.00
ACGTcount: A:0.37, C:0.03, G:0.09, T:0.51
Consensus pattern (61 bp):
AATTAATTATCGTTGTTAAAATTTTTATTTTTTTAATAGATTACTGATACAAAAATTAGTA
Found at i:92234186 original size:25 final size:25
Alignment explanation
Indices: 92234137--92234186 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
92234127 TCGTTAACTC
* **
92234137 GACTCGATTTGACTCGAAATTATTT
1 GACTCGATTCGACTCGAAAAAATTT
*
92234162 GACTCGATTCGATTCGAAAAAATTT
1 GACTCGATTCGACTCGAAAAAATTT
92234187 CAAATTAAGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (25 bp):
GACTCGATTCGACTCGAAAAAATTT
Found at i:92240746 original size:17 final size:18
Alignment explanation
Indices: 92240701--92240737 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
92240691 CTAAATTAAT
92240701 TAAT-ATAAAATCTAAAA
1 TAATAATAAAATCTAAAA
92240718 TAATAATAAAAT-TAAAA
1 TAATAATAAAATCTAAAA
92240735 TAA
1 TAA
92240738 ACTTAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (18 bp):
TAATAATAAAATCTAAAA
Found at i:92241521 original size:8 final size:8
Alignment explanation
Indices: 92241510--92241541 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
92241500 TATTTACAAT
92241510 TTTTTTCA
1 TTTTTTCA
92241518 TTTTTTCA
1 TTTTTTCA
92241526 -TTTTTCA
1 TTTTTTCA
92241533 TTTTTTCA
1 TTTTTTCA
92241541 T
1 T
92241542 GCACAAGCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 7 0.30
8 16 0.70
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.75
Consensus pattern (8 bp):
TTTTTTCA
Found at i:92241531 original size:15 final size:15
Alignment explanation
Indices: 92241511--92241541 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
92241501 ATTTACAATT
92241511 TTTTTCATTTTTTCA
1 TTTTTCATTTTTTCA
92241526 TTTTTCATTTTTTCA
1 TTTTTCATTTTTTCA
92241541 T
1 T
92241542 GCACAAGCAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTTTCATTTTTTCA
Found at i:92242162 original size:13 final size:14
Alignment explanation
Indices: 92242136--92242170 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
92242126 TTTGGGTGTT
92242136 TTATTTTCTTTTTC
1 TTATTTTCTTTTTC
*
92242150 TTCTTTT-TTTTTC
1 TTATTTTCTTTTTC
92242163 TTATTTTC
1 TTATTTTC
92242171 CTATGGATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
13 12 0.67
14 6 0.33
ACGTcount: A:0.06, C:0.14, G:0.00, T:0.80
Consensus pattern (14 bp):
TTATTTTCTTTTTC
Found at i:92247508 original size:19 final size:19
Alignment explanation
Indices: 92247484--92247520 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
92247474 TCATTGACCA
92247484 AAATCGTTT-TTAATAAATC
1 AAATCGTTTATTAA-AAATC
92247503 AAATCGTTTATTAAAAAT
1 AAATCGTTTATTAAAAAT
92247521 AACCACTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (19 bp):
AAATCGTTTATTAAAAATC
Found at i:92249736 original size:46 final size:46
Alignment explanation
Indices: 92249649--92249736 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 46
92249639 TGAAGAAGCC
* * *
92249649 ACAAATCCTATACCTCTGAGTTGTAGTGGGATAAATTAAAGATGGT
1 ACAAATCCTATACCCCTGAGTTGCAGTGGGATAAATAAAAGATGGT
* **
92249695 ACAAATCCTATACCCCTTAGTTGCAGTGGGATGGATAAAAGA
1 ACAAATCCTATACCCCTGAGTTGCAGTGGGATAAATAAAAGA
92249737 AACCATAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 36 1.00
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (46 bp):
ACAAATCCTATACCCCTGAGTTGCAGTGGGATAAATAAAAGATGGT
Found at i:92250334 original size:44 final size:44
Alignment explanation
Indices: 92250286--92250424 Score: 120
Period size: 44 Copynumber: 3.1 Consensus size: 44
92250276 AGCAGTAATA
*
92250286 GAGCAGATTTAAGCCACCAGCCTTATCTCCTTGAGGTAGCAAAG
1 GAGCAGATTAAAGCCACCAGCCTTATCTCCTTGAGGTAGCAAAG
* ***** * * * * **
92250330 GAGCA-AGTTGAAGATTGTAGATCTTACCT-TTTCGAAGTAGCAGGG
1 GAGCAGA-TTAAAGCCACCAG-CCTTATCTCCTT-GAGGTAGCAAAG
92250375 GAGCAGATTAAAGCCACCAGCCTTATCTCCTTGAGGTAGCAAAG
1 GAGCAGATTAAAGCCACCAGCCTTATCTCCTTGAGGTAGCAAAG
92250419 GAGCAG
1 GAGCAG
92250425 GCTGAAGATT
Statistics
Matches: 66, Mismatches: 24, Indels: 10
0.66 0.24 0.10
Matches are distributed among these distances:
43 1 0.02
44 35 0.53
45 29 0.44
46 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.26, T:0.23
Consensus pattern (44 bp):
GAGCAGATTAAAGCCACCAGCCTTATCTCCTTGAGGTAGCAAAG
Found at i:92250355 original size:89 final size:90
Alignment explanation
Indices: 92250262--92250448 Score: 270
Period size: 89 Copynumber: 2.1 Consensus size: 90
92250252 AGACGGCGAG
* * *
92250262 TCTTATCTCTAT-GAAGCAGTAATAGAGCAGATTTAAGCCACCAGCCTTATCTCCTTGAGGTAGC
1 TCTTATCTCTATCGAAGCAGCAAGAGAGCAGATTAAAGCCACCAGCCTTATCTCCTTGAGGTAGC
*
92250326 AAAGGAGCAAGTTGAAGATTGTAGA
66 AAAGGAGCAAGCTGAAGATTGTAGA
* * * * *
92250351 TCTTACCT-TTTCGAAGTAGCAGGGGAGCAGATTAAAGCCACCAGCCTTATCTCCTTGAGGTAGC
1 TCTTATCTCTATCGAAGCAGCAAGAGAGCAGATTAAAGCCACCAGCCTTATCTCCTTGAGGTAGC
*
92250415 AAAGGAGCAGGCTGAAGATTGTAGA
66 AAAGGAGCAAGCTGAAGATTGTAGA
92250440 TCTTATCTC
1 TCTTATCTC
92250449 CCTGAGATAG
Statistics
Matches: 85, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
88 2 0.02
89 83 0.98
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.27
Consensus pattern (90 bp):
TCTTATCTCTATCGAAGCAGCAAGAGAGCAGATTAAAGCCACCAGCCTTATCTCCTTGAGGTAGC
AAAGGAGCAAGCTGAAGATTGTAGA
Found at i:92250461 original size:89 final size:89
Alignment explanation
Indices: 92250286--92250449 Score: 274
Period size: 89 Copynumber: 1.8 Consensus size: 89
92250276 AGCAGTAATA
* *
92250286 GAGCAGATTTAAGCCACCAGCCTTATCTCCTTGAGGTAGCAAAGGAGCAAGTTGAAGATTGTAGA
1 GAGCAGATTAAAGCCACCAGCCTTATCTCCTTGAGGTAGCAAAGGAGCAAGCTGAAGATTGTAGA
**
92250351 TCTTACCTTTTCGAAGTAGCAGGG
66 TCTTACCTCCTCGAAGTAGCAGGG
*
92250375 GAGCAGATTAAAGCCACCAGCCTTATCTCCTTGAGGTAGCAAAGGAGCAGGCTGAAGATTGTAGA
1 GAGCAGATTAAAGCCACCAGCCTTATCTCCTTGAGGTAGCAAAGGAGCAAGCTGAAGATTGTAGA
*
92250440 TCTTATCTCC
66 TCTTACCTCC
92250450 CTGAGATAGC
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
89 69 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (89 bp):
GAGCAGATTAAAGCCACCAGCCTTATCTCCTTGAGGTAGCAAAGGAGCAAGCTGAAGATTGTAGA
TCTTACCTCCTCGAAGTAGCAGGG
Found at i:92250606 original size:134 final size:134
Alignment explanation
Indices: 92250366--92250611 Score: 352
Period size: 134 Copynumber: 1.8 Consensus size: 134
92250356 CCTTTTCGAA
* * *
92250366 GTAGCAGGGGAGCAGATTAAAGCCACCAGCCTTATCTCCTTGAGGTAGCAAAGGAGCAGGCTGAA
1 GTAGCAGGGAAGCAGATTAAAGCCACCAGCCTTATCTCCTTGAAGTAGCAAAGAAGCAGGCTGAA
* * * **
92250431 GATTGTAGATCTTATCTCCCTGAGATAGCAGTGGAGGAGATCAAAGACAACAAATCTGATCTTCC
66 GATAGCAGATCTTATCTCCCTGAGATAGCAGCGGAACAGATCAAAGACAACAAATCTGATCTTCC
92250496 CGAG
131 CGAG
* * *
92250500 GTAGCAGGGAAGCAGA-TATAGGCCACCAGTCTTATCTCCTTGAAGTAGCAAAGAAGTAGGCTGA
1 GTAGCAGGGAAGCAGATTA-AAGCCACCAGCCTTATCTCCTTGAAGTAGCAAAGAAGCAGGCTGA
*
92250564 AGATAGCAGATCTTATCTCCCTGAAGTTA-CAGCGGAACAGATCAAAGA
65 AGATAGCAGATCTTATCTCCCTG-AGATAGCAGCGGAACAGATCAAAGA
92250612 TAGCAAACCT
Statistics
Matches: 98, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
133 2 0.02
134 92 0.94
135 4 0.04
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.21
Consensus pattern (134 bp):
GTAGCAGGGAAGCAGATTAAAGCCACCAGCCTTATCTCCTTGAAGTAGCAAAGAAGCAGGCTGAA
GATAGCAGATCTTATCTCCCTGAGATAGCAGCGGAACAGATCAAAGACAACAAATCTGATCTTCC
CGAG
Found at i:92250737 original size:132 final size:132
Alignment explanation
Indices: 92250597--92250945 Score: 334
Period size: 132 Copynumber: 2.7 Consensus size: 132
92250587 AAGTTACAGC
* ** * *
92250597 GGAA-CAGATCAAAGATAGCAAACCTTATCT-CTCTGAAGTTGCAG-AGAGCAGGTTGAAG-TTA
1 GGAAGCAGATCAAAGACA-CAAACCTTATCTCCT-TG-AGCAGCAGTAGAGCAGGCTAAAGATTA
* *
92250658 CAGGTCTTATCTCCCTAAGCAGTAGTAGAGTAGATCGAAGACGGTGAATCTTATCTTCCC-GAGG
63 CAGATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGTGAATCTTATCTTCCCAG-GG
92250722 TAGTAG
127 TAGTAG
** * * * * * *
92250728 GGAAGCAGATTTAAGCCACCAGCCTTATCTCCTTGAGCAGCAGTGGAGTAGGCTAAAGATTATAG
1 GGAAGCAGATCAAAGACACAAACCTTATCTCCTTGAGCAGCAGTAGAGCAGGCTAAAGATTACAG
* *
92250793 ATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCGAAGACGGTGAATCTTATCTTCCCAGGGTAGT
66 ATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGTGAATCTTATCTTCCCAGGGTAGT
92250858 AG
131 AG
* ** * * * * * * * **
92250860 GGAAGCATATTTAAGCCACTAGCTTTATCT-CTCTAAGCAGTAGT-GAGCAGGCTGAAGATTGTA
1 GGAAGCAGATCAAAGACACAAACCTTATCTCCT-TGAGCAGCAGTAGAGCAGGCTAAAGATTACA
*
92250923 GCTCTTATCTCCCTAAGCAGTAG
65 GATCTTATCTCCCTAAGCAGTAG
92250946 CGAAGCAGAT
Statistics
Matches: 185, Mismatches: 27, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
130 6 0.03
131 65 0.35
132 113 0.61
133 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (132 bp):
GGAAGCAGATCAAAGACACAAACCTTATCTCCTTGAGCAGCAGTAGAGCAGGCTAAAGATTACAG
ATCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGTGAATCTTATCTTCCCAGGGTAGT
AG
Found at i:92251708 original size:3 final size:3
Alignment explanation
Indices: 92251685--92251865 Score: 108
Period size: 3 Copynumber: 60.3 Consensus size: 3
92251675 GGGGAGAGTG
* * *
92251685 TTA TTT TTA ATA TTG TTA TTA TTA TATA TTA TTA TTA CTTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA -TTA TTA TTA
* * *
92251732 -TA TTTA TTA -TA TTA -TA TTTA TT- TTA TTA CTG TTA CTA TTA TT-
1 TTA -TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
** * **
92251774 TTA -TA TATA TTTA TTA CCA TTA TTTA TTTA TTA TTA TTA TTA GTA ACA
1 TTA TTA T-TA -TTA TTA TTA TTA -TTA -TTA TTA TTA TTA TTA TTA TTA
* * *
92251822 -TA TTG TTA TTT TTA TTA TT- TTA TTA TTC TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
92251866 GGTACTATAT
Statistics
Matches: 137, Mismatches: 26, Indels: 30
0.71 0.13 0.16
Matches are distributed among these distances:
2 15 0.11
3 100 0.73
4 21 0.15
5 1 0.01
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:92251726 original size:23 final size:23
Alignment explanation
Indices: 92251700--92251865 Score: 105
Period size: 20 Copynumber: 7.7 Consensus size: 23
92251690 TTTAATATTG
92251700 TTATTATTATATATTATTATTAC
1 TTATTATTATATATTATTATTAC
92251723 TTATTATTATAT-TTATTA-TA-
1 TTATTATTATATATTATTATTAC
*
92251743 TTA-TATT-TATTTTATTACTGTTAC
1 TTATTATTATATATTATTA---TTAC
*
92251767 -TATTATTTTATATATATTTATTAC
1 TTATTATTATATAT-TA-TTATTAC
*
92251791 -CATTATT-TAT-TTATTATTA-
1 TTATTATTATATATTATTATTAC
* * *
92251810 TTATTAGTA-ACA-TATTGTTA-
1 TTATTATTATATATTATTATTAC
*
92251830 TTTTTATTAT-T-TTATTATT-C
1 TTATTATTATATATTATTATTAC
92251850 TTATTATTAT-TATTAT
1 TTATTATTATATATTAT
92251866 GGTACTATAT
Statistics
Matches: 115, Mismatches: 11, Indels: 36
0.71 0.07 0.22
Matches are distributed among these distances:
18 3 0.03
19 10 0.09
20 45 0.39
21 8 0.07
22 7 0.06
23 19 0.17
24 14 0.12
25 4 0.03
26 2 0.02
27 3 0.03
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (23 bp):
TTATTATTATATATTATTATTAC
Found at i:92251728 original size:20 final size:18
Alignment explanation
Indices: 92251685--92251865 Score: 108
Period size: 17 Copynumber: 10.1 Consensus size: 18
92251675 GGGGAGAGTG
* * *
92251685 TTATTTTTAATATTGTTA
1 TTATTATTATTATTATTA
92251703 TTATTATATATTATTATTA
1 TTATTAT-TATTATTATTA
92251722 CTTATTATTA-TATTTATTA
1 -TTATTATTATTA-TTATTA
92251741 -TATTA-TATTTATT-TTA
1 TTATTATTA-TTATTATTA
* * *
92251757 TTACTGTTACTATTATT-
1 TTATTATTATTATTATTA
**
92251774 TTA-TATATATTTATTACCA
1 TTATTAT-TA-TTATTATTA
92251793 TTATTTATTTATTATTATTA
1 TTA-TTA-TTATTATTATTA
* ** *
92251813 TTAGTAACA-TATTGTTA
1 TTATTATTATTATTATTA
*
92251830 TTTTTATTATT-TTATTA
1 TTATTATTATTATTATTA
*
92251847 TTCTTATTATTATTATTA
1 TTATTATTATTATTATTA
92251865 T
1 T
92251866 GGTACTATAT
Statistics
Matches: 125, Mismatches: 22, Indels: 32
0.70 0.12 0.18
Matches are distributed among these distances:
16 7 0.06
17 46 0.37
18 28 0.22
19 22 0.18
20 17 0.14
21 4 0.03
22 1 0.01
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (18 bp):
TTATTATTATTATTATTA
Found at i:92251746 original size:14 final size:14
Alignment explanation
Indices: 92251709--92251759 Score: 59
Period size: 14 Copynumber: 3.5 Consensus size: 14
92251699 GTTATTATTA
92251709 TATATTAT-TATTACT
1 TATATTATAT-TTA-T
92251724 TATTATTATATTTAT
1 TA-TATTATATTTAT
92251739 TATATTATATTTAT
1 TATATTATATTTAT
*
92251753 TTTATTA
1 TATATTA
92251760 CTGTTACTAT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
14 18 0.55
15 5 0.15
16 9 0.27
17 1 0.03
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (14 bp):
TATATTATATTTAT
Found at i:92256784 original size:91 final size:91
Alignment explanation
Indices: 92256670--92256848 Score: 340
Period size: 91 Copynumber: 2.0 Consensus size: 91
92256660 CCTAAATATG
92256670 TATGCATATGTATCAAATACAACGAATAAAAATAAAAAAAATAATGTGAAACAAGAGGCTCACCA
1 TATGCATATGTATCAAATACAACGAATAAAAATAAAAAAAATAATGTGAAACAAGAGGCTCACCA
92256735 GTGAGACTTTCACATCTACTGCTAGA
66 GTGAGACTTTCACATCTACTGCTAGA
* *
92256761 TATGCATATGTATCAAATACAACGAATAAAAATAACAAAAATAATGTGAAACAAGAGGTTCACCA
1 TATGCATATGTATCAAATACAACGAATAAAAATAAAAAAAATAATGTGAAACAAGAGGCTCACCA
92256826 GTGAGACTTTCACATCTACTGCT
66 GTGAGACTTTCACATCTACTGCT
92256849 CTATAAAATA
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
91 86 1.00
ACGTcount: A:0.45, C:0.17, G:0.14, T:0.24
Consensus pattern (91 bp):
TATGCATATGTATCAAATACAACGAATAAAAATAAAAAAAATAATGTGAAACAAGAGGCTCACCA
GTGAGACTTTCACATCTACTGCTAGA
Found at i:92261017 original size:7 final size:7
Alignment explanation
Indices: 92261001--92261070 Score: 52
Period size: 7 Copynumber: 10.0 Consensus size: 7
92260991 CCCTATCCTA
*
92261001 TAAACAC
1 TAAACCC
*
92261008 TAAACTC
1 TAAACCC
92261015 TAAACCC
1 TAAACCC
* **
92261022 TTACACAT
1 -TAAACCC
*
92261030 TAAACTC
1 TAAACCC
92261037 T-AACCC
1 TAAACCC
92261043 TAAACCC
1 TAAACCC
*
92261050 TAAACCA
1 TAAACCC
*
92261057 TAATCCC
1 TAAACCC
92261064 TAAACCC
1 TAAACCC
92261071 ATAATTCATC
Statistics
Matches: 48, Mismatches: 13, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
6 5 0.10
7 39 0.81
8 4 0.08
ACGTcount: A:0.43, C:0.36, G:0.00, T:0.21
Consensus pattern (7 bp):
TAAACCC
Found at i:92261064 original size:14 final size:15
Alignment explanation
Indices: 92261038--92261075 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
92261028 ATTAAACTCT
*
92261038 AACCC-TAAACCCTA
1 AACCCATAATCCCTA
92261052 AA-CCATAATCCCTA
1 AACCCATAATCCCTA
92261066 AACCCATAAT
1 AACCCATAAT
92261076 TCATCATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 2 0.10
14 12 0.57
15 7 0.33
ACGTcount: A:0.45, C:0.37, G:0.00, T:0.18
Consensus pattern (15 bp):
AACCCATAATCCCTA
Found at i:92261304 original size:22 final size:22
Alignment explanation
Indices: 92261275--92261367 Score: 66
Period size: 21 Copynumber: 4.3 Consensus size: 22
92261265 AACTCCTAAT
92261275 CCTTAATCCCTAAACCATAAA-
1 CCTTAATCCCTAAACCATAAAC
**
92261296 CCTTAAAT-CCTAAAATATAAAC
1 CCTT-AATCCCTAAACCATAAAC
* **
92261318 CCTTAACCCCTAAA-CACCAAC
1 CCTTAATCCCTAAACCATAAAC
* * * *
92261339 CCTTAAACCATAACCCCTAAAC
1 CCTTAATCCCTAAACCATAAAC
*
92261361 CCATAAT
1 CCTTAAT
92261368 ACATAAACTT
Statistics
Matches: 54, Mismatches: 14, Indels: 7
0.72 0.19 0.09
Matches are distributed among these distances:
21 32 0.59
22 22 0.41
ACGTcount: A:0.43, C:0.35, G:0.00, T:0.22
Consensus pattern (22 bp):
CCTTAATCCCTAAACCATAAAC
Found at i:92261364 original size:15 final size:15
Alignment explanation
Indices: 92261313--92261366 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 15
92261303 TCCTAAAATA
*
92261313 TAAACCCTTAACCCC
1 TAAACCCATAACCCC
*
92261328 TAAACACC--AACCCT
1 TAAAC-CCATAACCCC
92261342 TAAA-CCATAACCCC
1 TAAACCCATAACCCC
92261356 TAAACCCATAA
1 TAAACCCATAA
92261367 TACATAAACT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
12 2 0.06
14 18 0.55
15 11 0.33
16 2 0.06
ACGTcount: A:0.43, C:0.41, G:0.00, T:0.17
Consensus pattern (15 bp):
TAAACCCATAACCCC
Found at i:92261446 original size:17 final size:19
Alignment explanation
Indices: 92261424--92261463 Score: 57
Period size: 17 Copynumber: 2.2 Consensus size: 19
92261414 TTTTTCTATG
92261424 TTTTTACTT-TCA-AATTT
1 TTTTTACTTGTCATAATTT
*
92261441 TTTTTACTTGTCATTATTT
1 TTTTTACTTGTCATAATTT
92261460 TTTT
1 TTTT
92261464 GAAGAATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 9 0.45
18 3 0.15
19 8 0.40
ACGTcount: A:0.17, C:0.10, G:0.03, T:0.70
Consensus pattern (19 bp):
TTTTTACTTGTCATAATTT
Found at i:92261621 original size:41 final size:40
Alignment explanation
Indices: 92261554--92261893 Score: 329
Period size: 41 Copynumber: 8.4 Consensus size: 40
92261544 TGTTTTTTGC
** *
92261554 GGCGTTTTTCCAAAAGCGTCGCTAAAAACTGAGCAATAGC
1 GGCGTTTTTCCAAAAGCACCGCTAAAAACTGAGCAATAGT
** * * * *
92261594 AACGTTTTTCCAAAAAGCACTGCTAAAACCTCGATCTATAGT
1 GGCGTTTTTCC-AAAAGCACCGCTAAAAACT-GAGCAATAGT
* * *
92261636 GTCGTTTTTCCAAAAGCGCCACTAAAAACTGAGCAATAGT
1 GGCGTTTTTCCAAAAGCACCGCTAAAAACTGAGCAATAGT
* * * * *
92261676 GGCATTTTTCCAAAAGCGCCGCTAAAACCTCGATCTATAGT
1 GGCGTTTTTCCAAAAGCACCGCTAAAAACT-GAGCAATAGT
* **
92261717 GGCGTTTTTCCAAAAGCACCGTTAAAAACTGAATAATAGT
1 GGCGTTTTTCCAAAAGCACCGCTAAAAACTGAGCAATAGT
* * * *
92261757 GGTGTTTTTCCAAAAGCACCGCTAAAACCTCGATCTATAGT
1 GGCGTTTTTCCAAAAGCACCGCTAAAAACT-GAGCAATAGT
* * *
92261798 GGCATTTTTCCAAAAGCGCCGCTAAAAACTGAGCAATAGC
1 GGCGTTTTTCCAAAAGCACCGCTAAAAACTGAGCAATAGT
* * * * * * *
92261838 GGTGTTTTTCCAAAAGCGCCACTAAAACCTCGATCTATAGC
1 GGCGTTTTTCCAAAAGCACCGCTAAAAACT-GAGCAATAGT
92261879 GGCGTTTTTCCAAAA
1 GGCGTTTTTCCAAAA
92261894 ACCGCCGCTA
Statistics
Matches: 245, Mismatches: 50, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
40 110 0.45
41 119 0.49
42 16 0.07
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.26
Consensus pattern (40 bp):
GGCGTTTTTCCAAAAGCACCGCTAAAAACTGAGCAATAGT
Found at i:92261743 original size:81 final size:81
Alignment explanation
Indices: 92261554--92261903 Score: 493
Period size: 81 Copynumber: 4.3 Consensus size: 81
92261544 TGTTTTTTGC
* ** *
92261554 GGCGTTTTTCCAAAAGCGTCGCTAAAAACTGAGCAATAGCAACGTTTTTCCAAAAAGCACTGCTA
1 GGCGTTTTTCCAAAAGCGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTCC-AAAAGCACCGCTA
92261619 AAACCTCGATCTATAGT
65 AAACCTCGATCTATAGT
* * * * *
92261636 GTCGTTTTTCCAAAAGCGCCACTAAAAACTGAGCAATAGTGGCATTTTTCCAAAAGCGCCGCTAA
1 GGCGTTTTTCCAAAAGCGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTCCAAAAGCACCGCTAA
92261701 AACCTCGATCTATAGT
66 AACCTCGATCTATAGT
* * ** * *
92261717 GGCGTTTTTCCAAAAGCACCGTTAAAAACTGAATAATAGTGGTGTTTTTCCAAAAGCACCGCTAA
1 GGCGTTTTTCCAAAAGCGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTCCAAAAGCACCGCTAA
92261782 AACCTCGATCTATAGT
66 AACCTCGATCTATAGT
* * * *
92261798 GGCATTTTTCCAAAAGCGCCGCTAAAAACTGAGCAATAGCGGTGTTTTTCCAAAAGCGCCACTAA
1 GGCGTTTTTCCAAAAGCGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTCCAAAAGCACCGCTAA
*
92261863 AACCTCGATCTATAGC
66 AACCTCGATCTATAGT
*
92261879 GGCGTTTTTCCAAAAACCGCCGCTA
1 GGCGTTTTTCC-AAAAGCGCCGCTA
92261904 TTGTTCAATT
Statistics
Matches: 238, Mismatches: 29, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
81 182 0.76
82 56 0.24
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (81 bp):
GGCGTTTTTCCAAAAGCGCCGCTAAAAACTGAGCAATAGCGGCGTTTTTCCAAAAGCACCGCTAA
AACCTCGATCTATAGT
Found at i:92261920 original size:41 final size:41
Alignment explanation
Indices: 92261875--92262004 Score: 163
Period size: 41 Copynumber: 3.2 Consensus size: 41
92261865 CCTCGATCTA
* *
92261875 TAGCGGCGTTT-TTCCAAAAACCGCCGCTATTGTTCAATTTT
1 TAGCGGCGTTTGTTCCAAAAA-CGCCGCTATTGCTCAGTTTT
** *
92261916 TAGCGGCGTTTGGGCCAAAAACGCCGTTATTGCTCAGTTTT
1 TAGCGGCGTTTGTTCCAAAAACGCCGCTATTGCTCAGTTTT
** *
92261957 TAGCGGCGTTTGAACCAAAAATGCCGCTATTGCTCAGTTTT
1 TAGCGGCGTTTGTTCCAAAAACGCCGCTATTGCTCAGTTTT
*
92261998 TTGCGGC
1 TAGCGGC
92262005 TTTTTATCGC
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
41 71 0.91
42 7 0.09
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.33
Consensus pattern (41 bp):
TAGCGGCGTTTGTTCCAAAAACGCCGCTATTGCTCAGTTTT
Found at i:92264068 original size:181 final size:181
Alignment explanation
Indices: 92263759--92264121 Score: 708
Period size: 181 Copynumber: 2.0 Consensus size: 181
92263749 GGCAGTTAAC
92263759 AGGTAGTACTGTGGTTTCTAAATTGTTGGAAAAAGTGCAGGCATTATATCGATCTGATAGCAAAT
1 AGGTAGTACTGTGGTTTCTAAATTGTTGGAAAAAGTGCAGGCATTATATCGATCTGATAGCAAAT
*
92263824 TGCACAAGTTCTTGAAGAAGTTCAGCATCAGCATGATCAACACCCTAAGTACACATGGGATGGAA
66 TGCACAAGTTCTTGAAGAAGTTCAGCATCAGCATGATCAACACCCTAAGTACACATAGGATGGAA
*
92263889 TATTTTTAAGAAGGAATAGTAAGATTGTTGTGGGATAAGATGACACTCTTA
131 TATTTTTAAGAAGGAATAGTAAGATTATTGTGGGATAAGATGACACTCTTA
92263940 AGGTAGTACTGTGGTTTCTAAATTGTTGGAAAAAGTGCAGGCATTATATCGATCTGATAGCAAAT
1 AGGTAGTACTGTGGTTTCTAAATTGTTGGAAAAAGTGCAGGCATTATATCGATCTGATAGCAAAT
92264005 TGCACAAGTTCTTGAAGAAGTTCAGCATCAGCATGATCAACACCCTAAGTACACATAGGATGGAA
66 TGCACAAGTTCTTGAAGAAGTTCAGCATCAGCATGATCAACACCCTAAGTACACATAGGATGGAA
92264070 TATTTTTAAGAAGGAATAGTAAGATTATTGTGGGATAAGATGACACTCTTA
131 TATTTTTAAGAAGGAATAGTAAGATTATTGTGGGATAAGATGACACTCTTA
92264121 A
1 A
92264122 CCAAGCTTTA
Statistics
Matches: 180, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
181 180 1.00
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (181 bp):
AGGTAGTACTGTGGTTTCTAAATTGTTGGAAAAAGTGCAGGCATTATATCGATCTGATAGCAAAT
TGCACAAGTTCTTGAAGAAGTTCAGCATCAGCATGATCAACACCCTAAGTACACATAGGATGGAA
TATTTTTAAGAAGGAATAGTAAGATTATTGTGGGATAAGATGACACTCTTA
Found at i:92278969 original size:31 final size:30
Alignment explanation
Indices: 92278927--92279022 Score: 120
Period size: 31 Copynumber: 3.1 Consensus size: 30
92278917 CAATCTGGTT
92278927 ACTAAACTATTCAAAAGTTTTCATTTAAGTC
1 ACTAAACTATTCAAAAGTTTT-ATTTAAGTC
*
92278958 ACTAAATTATTCAAAAGTTTTATTTTAAGTC
1 ACTAAACTATTCAAAAGTTTTA-TTTAAGTC
* * * *
92278989 ATTGAACAATTCAAAAGTTTTTACTTAAGTC
1 ACTAAACTATTCAAAAG-TTTTATTTAAGTC
92279020 ACT
1 ACT
92279023 GGGCTGTTAA
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
30 1 0.02
31 50 0.89
32 5 0.09
ACGTcount: A:0.39, C:0.14, G:0.07, T:0.41
Consensus pattern (30 bp):
ACTAAACTATTCAAAAGTTTTATTTAAGTC
Found at i:92282849 original size:27 final size:25
Alignment explanation
Indices: 92282785--92282846 Score: 90
Period size: 26 Copynumber: 2.4 Consensus size: 25
92282775 ACCCCCTCCC
92282785 AAAAAAAACCTAACCCAAAAAAGAA
1 AAAAAAAACCTAACCCAAAAAAGAA
92282810 AAAGAAAAACCTAACCCAAAAAA-AA
1 AAA-AAAAACCTAACCCAAAAAAGAA
92282835 AACCAAAAAACC
1 AA--AAAAAACC
92282847 CTAGCCACCT
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
25 7 0.21
26 26 0.76
27 1 0.03
ACGTcount: A:0.71, C:0.23, G:0.03, T:0.03
Consensus pattern (25 bp):
AAAAAAAACCTAACCCAAAAAAGAA
Found at i:92283662 original size:15 final size:15
Alignment explanation
Indices: 92283640--92283681 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
92283630 CTAATACGTA
92283640 TATATATATATGTAT-
1 TATATATATAT-TATG
*
92283655 TTTATATATATTATG
1 TATATATATATTATG
92283670 TATATATATATT
1 TATATATATATT
92283682 TTTAATGCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 3 0.12
15 21 0.88
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (15 bp):
TATATATATATTATG
Found at i:92283673 original size:13 final size:15
Alignment explanation
Indices: 92283642--92283678 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 15
92283632 AATACGTATA
*
92283642 TATATATATGTATTT
1 TATATATATGTATTG
92283657 TATATATAT-TA-TG
1 TATATATATGTATTG
92283670 TATATATAT
1 TATATATAT
92283679 ATTTTTAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 10 0.48
14 2 0.10
15 9 0.43
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (15 bp):
TATATATATGTATTG
Found at i:92285734 original size:12 final size:12
Alignment explanation
Indices: 92285717--92285752 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
92285707 ATTCATTTGA
92285717 CATTCATGCATT
1 CATTCATGCATT
*
92285729 CATTCATGCATC
1 CATTCATGCATT
*
92285741 CATTCATTCATT
1 CATTCATGCATT
92285753 GCATATCCCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:92285746 original size:16 final size:17
Alignment explanation
Indices: 92285725--92285756 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
92285715 GACATTCATG
92285725 CATTCATTCA-TGCATC
1 CATTCATTCATTGCATC
92285741 CATTCATTCATTGCAT
1 CATTCATTCATTGCAT
92285757 ATCCCATACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.25, C:0.28, G:0.06, T:0.41
Consensus pattern (17 bp):
CATTCATTCATTGCATC
Found at i:92292970 original size:18 final size:17
Alignment explanation
Indices: 92292937--92292975 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
92292927 TTGTATAAAT
92292937 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
92292955 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
92292972 TGTG
1 TGTG
92292976 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Done.