Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 279 of 295
Found at i:95109390 original size:16 final size:17
Alignment explanation
Indices: 95109350--95109392 Score: 63
Period size: 16 Copynumber: 2.6 Consensus size: 17
95109340 AGGAAAAAAT
*
95109350 AATTTTC-TACCTCTCC
1 AATTTTCTTTCCTCTCC
95109366 AATTTTCTTTCCTCTCC
1 AATTTTCTTTCCTCTCC
95109383 -ATTTTCTTTC
1 AATTTTCTTTC
95109393 AACTCTACCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 17 0.68
17 8 0.32
ACGTcount: A:0.14, C:0.33, G:0.00, T:0.53
Consensus pattern (17 bp):
AATTTTCTTTCCTCTCC
Found at i:95112433 original size:61 final size:63
Alignment explanation
Indices: 95112338--95112460 Score: 169
Period size: 61 Copynumber: 2.0 Consensus size: 63
95112328 ATCTTCTTCA
* * *
95112338 GGATCGTCTCCAACTGGTCTTAATGGTGTACATGAGTCTAGTT-TT-GACTAGTGATACTGTT
1 GGATCGTCTCCAACTGGTCTTAATAGTGCACATGAGCCTAGTTCTTCGACTAGTGATACTGTT
** * *
95112399 GGATCGTCTCCGGCTGGTCTTACTAGTGCACATGAGCCTAGTTCTTCGACTGGTGATACTGT
1 GGATCGTCTCCAACTGGTCTTAATAGTGCACATGAGCCTAGTTCTTCGACTAGTGATACTGT
95112461 CGAGTTCGCA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
61 37 0.70
62 2 0.04
63 14 0.26
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (63 bp):
GGATCGTCTCCAACTGGTCTTAATAGTGCACATGAGCCTAGTTCTTCGACTAGTGATACTGTT
Found at i:95115495 original size:40 final size:40
Alignment explanation
Indices: 95115451--95115566 Score: 214
Period size: 40 Copynumber: 2.9 Consensus size: 40
95115441 GATATATTAA
95115451 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATGT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATGT
*
95115491 ATATCCGGTTTAAATCCCGCAGGCTTCGTGCTGGTAATGT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATGT
*
95115531 ATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTA
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
95115567 CTATATCCAG
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 73 1.00
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (40 bp):
ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATGT
Found at i:95115592 original size:40 final size:40
Alignment explanation
Indices: 95115451--95115583 Score: 198
Period size: 40 Copynumber: 3.4 Consensus size: 40
95115441 GATATATTAA
*
95115451 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATGT
1 ATATCCGGCTTAAATCCCGCAGGCTTCGTGCTGGTAATGT
*
95115491 ATATCCGGTTTAAATCCCGCAGGCTTCGTGCTGGTAATGT
1 ATATCCGGCTTAAATCCCGCAGGCTTCGTGCTGGTAATGT
* * *
95115531 ATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGT-A-CT
1 ATATCCGGCTTAAATCCCGCAGGCTTCGTGCTGGTAATGT
95115569 ATATCCAGGCTTAAA
1 ATATCC-GGCTTAAA
95115584 GTTTCGCAGA
Statistics
Matches: 87, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
38 7 0.08
39 8 0.09
40 72 0.83
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.30
Consensus pattern (40 bp):
ATATCCGGCTTAAATCCCGCAGGCTTCGTGCTGGTAATGT
Found at i:95123648 original size:80 final size:80
Alignment explanation
Indices: 95123465--95123661 Score: 272
Period size: 80 Copynumber: 2.5 Consensus size: 80
95123455 GATATATTAA
*
95123465 ATATCCGTGTTAAATCCCGCAGGCTTCGTGCTAGTAATGTATATCCAGGTTAAATCCCGCAGGCT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAATGTATATCCAGGTTAAATCCCGCAGGCT
*
95123530 TCGTGCTGGTAATGT
66 TCGTGCTGGTAATCT
* * * *
95123545 ATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATTTATATCCGGGTTAAATCCCGCAGGCT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAATGTATATCCAGGTTAAATCCCGCAGGCT
95123610 TCGTGCTGGT-A-CT
66 TCGTGCTGGTAATCT
** * *
95123623 ATATCCGGGCTTAAAGTTTCGCAGGCTTTGAGCTAGTAA
1 ATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTAGTAA
95123662 CTGGATTCGG
Statistics
Matches: 103, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
78 10 0.10
79 6 0.06
80 87 0.84
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.31
Consensus pattern (80 bp):
ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTAGTAATGTATATCCAGGTTAAATCCCGCAGGCT
TCGTGCTGGTAATCT
Found at i:95123650 original size:40 final size:40
Alignment explanation
Indices: 95123465--95123637 Score: 269
Period size: 40 Copynumber: 4.3 Consensus size: 40
95123455 GATATATTAA
* *
95123465 ATATCCGTGTTAAATCCCGCAGGCTTCGTGCTAGTAATGT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATGT
*
95123505 ATATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTAATGT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATGT
* *
95123545 ATATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTAATTT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATGT
*
95123585 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT-A-CT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATGT
95123623 ATATCCGGGCTTAAA
1 ATATCCGGG-TTAAA
95123638 GTTTCGCAGG
Statistics
Matches: 124, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
38 10 0.08
39 6 0.05
40 108 0.87
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.31
Consensus pattern (40 bp):
ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATGT
Found at i:95129135 original size:22 final size:23
Alignment explanation
Indices: 95129110--95129154 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
95129100 TCATAATAAC
*
95129110 ACATGAAATTAACAATA-TAAAT
1 ACATCAAATTAACAATACTAAAT
95129132 ACATCAAATTAACAATACTAAAT
1 ACATCAAATTAACAATACTAAAT
95129155 GCACAACAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 16 0.76
23 5 0.24
ACGTcount: A:0.58, C:0.13, G:0.02, T:0.27
Consensus pattern (23 bp):
ACATCAAATTAACAATACTAAAT
Found at i:95132613 original size:292 final size:298
Alignment explanation
Indices: 95132057--95132613 Score: 671
Period size: 292 Copynumber: 1.9 Consensus size: 298
95132047 ATTATTATAT
* * * * *
95132057 ACAACTAATGAAGGTAATAAAGTCTGTATAATAAAATCAATATGTATAAAAATATTTTTAAAGAG
1 ACAACTAATGAAGGTAATAAAGTCTGCATAATAAAATCAAAATGTATAAAAATATATATAAAGAA
* *
95132122 CTTTAGCTGAATAGTAAATAGTAAATTAAATATTTTATTAATGCAATTAGTATGGATTCATATCC
66 CTTTAGCT--ATAG-AAATAGTAAATTAAATATTTTATTAATGCAATTAGCATGGATTCAAATCC
* * *
95132187 TATCATATGTATATTTTCATTGGTTTTTTAAAAGTGAAAAGACTAAAATATACTCAAATAATATT
128 TACCATATGTATATTTTCATTAGTTTTTT-AAAGTGAAAAGACTAAAATACACTCAAATAATATT
* * * *** * * *
95132252 ACTTATTTTAGTTATGAAAAGGTATTCTTGTAACTTCCTAACCGAGATGGTGATCCAGTTGATGG
192 ACTTATTTTAATTATCAAAAGGCATTCCCATAACTTCCTAACCGAGATGGTAACCCAGTTGAGGG
95132317 TGACACCGACTTAGTCAAGAATTTAAATAATAGTATAGATAA
257 TGACACCGACTTAGTCAAGAATTTAAATAATAGTATAGATAA
* *
95132359 ACAACTGATGAAGGTAATAAAGTGC-GCATAATAAAATTAAAATGTATAAAAATATATATAAA-A
1 ACAACTAATGAAGGTAATAAAGT-CTGCATAATAAAATCAAAATGTATAAAAATATATATAAAGA
* * * * * ** *
95132422 ACTTTAG-T-T-G-CATGGTAAATTAAATATTTTATTAATGCAATTGGCGTGGGTTCAAATTTTG
65 ACTTTAGCTATAGAAATAGTAAATTAAATATTTTATTAATGCAATTAGCATGGATTCAAATCCTA
* * *
95132483 CCATATGTATATTTTTATTAGTTTTTT-AAGTGAAAAGACTAAAATACACTCGAATAATATTATT
130 CCATATGTATATTTTCATTAGTTTTTTAAAGTGAAAAGACTAAAATACACTCAAATAATATTACT
** * * *
95132547 TATTTTAATTA-CAAAAGGGCATTCCCATAACTTCCTAATTGAGTTTGTAACCCGGTTGAGGGTG
195 TATTTTAATTATCAAAA-GGCATTCCCATAACTTCCTAACCGAGATGGTAACCCAGTTGAGGGTG
95132611 ACA
259 ACA
95132614 TCAACACAAC
Statistics
Matches: 216, Mismatches: 37, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
291 4 0.02
292 82 0.38
294 65 0.30
296 1 0.00
297 1 0.00
300 1 0.00
301 7 0.03
302 54 0.25
303 1 0.00
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (298 bp):
ACAACTAATGAAGGTAATAAAGTCTGCATAATAAAATCAAAATGTATAAAAATATATATAAAGAA
CTTTAGCTATAGAAATAGTAAATTAAATATTTTATTAATGCAATTAGCATGGATTCAAATCCTAC
CATATGTATATTTTCATTAGTTTTTTAAAGTGAAAAGACTAAAATACACTCAAATAATATTACTT
ATTTTAATTATCAAAAGGCATTCCCATAACTTCCTAACCGAGATGGTAACCCAGTTGAGGGTGAC
ACCGACTTAGTCAAGAATTTAAATAATAGTATAGATAA
Found at i:95133249 original size:304 final size:302
Alignment explanation
Indices: 95132675--95133233 Score: 696
Period size: 304 Copynumber: 1.8 Consensus size: 302
95132665 ATATAACTGG
* * * * * **
95132675 TGGAGGTAATAGAATGTGCATAATAAAATTAAAATTTATAAAAATATTAAAATGAATGTTTAGTT
1 TGGAGATAATAGAATGTGCAAAATAAAAATAAAATGTATAAAAATATTAAAACGAAACTTTAGTT
* **
95132740 GAGTGGTAAATTAAAGGCTTTATAATGCAATTTGTGTAGATTCAAATCTCACCATATACATATTT
66 GAGTGGTAAATTAAAGGCTTTATAATGCAATTGGCATAGATTCAAATCTCACCATATACATATTT
* *
95132805 TTATTCATTTTTAAATTGAAAAGACTAAAATACCCTAAATAAAATTACTTATTTTAATTAAGGAT
131 TTATTCATTTTTAAAGTGAAAAGACTAAAATACCATAAATAAAATTACTTATTTTAATTAAGGAT
* * * * * *
95132870 GTGCATTCCTGTAATTTCCTAACCAATAAGTTGGTACTCGGTTGACTTGCGACACTAACTCAGTC
196 GTGCATTCCTATAATTTCCTAACC-A-AAGTTAGTACCCGGTTGACTTACAACACCAACTCAGTC
95132935 AAGAGTTTAAACAATAGTGTAGGTAGATATAAATATACATTTAA
259 AAGAGTTTAAACAATAGTGTAGGTAGATATAAATATACATTTAA
95132979 TGGAGATAATA-AAGTGTGCAAAATAAAAATAAAATGTATAAAAATATTAAAACGAAACTTTAGT
1 TGGAGATAATAGAA-TGTGCAAAATAAAAATAAAATGTATAAAAATATTAAAACGAAACTTTAGT
* * * * ** * *
95133043 TGAGTGGTAAATTAAAGGTTTTACTAATGCACTTGGCATGGGTTTGAATC-CTACCATATCCTTG
65 TGAGTGGTAAATTAAAGGCTTTA-TAATGCAATTGGCATAGATTCAAATCTC-ACCATATACAT-
* *
95133107 CTTTTTATTGATTTTTAAAGTGAAAAGACTAAAATACCATCAAA-AAATATT-CTTTATTTTAAT
127 ATTTTTATTCATTTTTAAAGTGAAAAGACTAAAATACCAT-AAATAAA-ATTAC-TTATTTTAAT
* * * * * *
95133170 TATGGATGTGCATTCCTATAATTTTCTCACC-GAGTTAGTGCCCGGTTGACTTATAACACCAACT
189 TAAGGATGTGCATTCCTATAATTTCCTAACCAAAGTTAGTACCCGGTTGACTTACAACACCAACT
95133234 TTTTTAGGAG
Statistics
Matches: 214, Mismatches: 34, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
303 2 0.01
304 102 0.48
305 27 0.13
306 40 0.19
307 43 0.20
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.35
Consensus pattern (302 bp):
TGGAGATAATAGAATGTGCAAAATAAAAATAAAATGTATAAAAATATTAAAACGAAACTTTAGTT
GAGTGGTAAATTAAAGGCTTTATAATGCAATTGGCATAGATTCAAATCTCACCATATACATATTT
TTATTCATTTTTAAAGTGAAAAGACTAAAATACCATAAATAAAATTACTTATTTTAATTAAGGAT
GTGCATTCCTATAATTTCCTAACCAAAGTTAGTACCCGGTTGACTTACAACACCAACTCAGTCAA
GAGTTTAAACAATAGTGTAGGTAGATATAAATATACATTTAA
Found at i:95135068 original size:48 final size:48
Alignment explanation
Indices: 95135010--95135101 Score: 166
Period size: 48 Copynumber: 1.9 Consensus size: 48
95135000 AAATTTTAAA
95135010 ATTTCAATTCCCACCAAATGATAAATGTTAAATTCATTAAGTTAAGTT
1 ATTTCAATTCCCACCAAATGATAAATGTTAAATTCATTAAGTTAAGTT
* *
95135058 ATTTCCATTCCCACCAAATGATAGATGTTAAATTCATTAAGTTA
1 ATTTCAATTCCCACCAAATGATAAATGTTAAATTCATTAAGTTA
95135102 TTTCCAAATT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.37
Consensus pattern (48 bp):
ATTTCAATTCCCACCAAATGATAAATGTTAAATTCATTAAGTTAAGTT
Found at i:95137236 original size:5 final size:5
Alignment explanation
Indices: 95137226--95137276 Score: 93
Period size: 5 Copynumber: 10.2 Consensus size: 5
95137216 AATTTTCCTC
*
95137226 TCTTT TCTTT TCTTT TCTTT TCCTT TCTTT TCTTT TCTTT TCTTT TCTTT
1 TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT TCTTT
95137276 T
1 T
95137277 TCCTTTAGTA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 44 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (5 bp):
TCTTT
Found at i:95138330 original size:21 final size:21
Alignment explanation
Indices: 95138306--95138348 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
95138296 GGGACAATAG
*
95138306 AAAAAA-TAAATTATAATTTTT
1 AAAAAATTAAATCA-AATTTTT
95138327 AAAAAATTAAATCAAATTTTT
1 AAAAAATTAAATCAAATTTTT
95138348 A
1 A
95138349 TATTTTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
AAAAAATTAAATCAAATTTTT
Found at i:95138331 original size:22 final size:21
Alignment explanation
Indices: 95138306--95138348 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
95138296 GGGACAATAG
*
95138306 AAAAAATAAATTATAATTTTTA
1 AAAAAATAAATCA-AATTTTTA
*
95138328 AAAAATTAAATCAAATTTTTA
1 AAAAAATAAATCAAATTTTTA
95138349 TATTTTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
AAAAAATAAATCAAATTTTTA
Found at i:95148804 original size:25 final size:24
Alignment explanation
Indices: 95148771--95148840 Score: 88
Period size: 25 Copynumber: 2.8 Consensus size: 24
95148761 AATGACACAC
* *
95148771 GGCCATGTCACCAGGCTGTGTGACA
1 GGCCGTGTC-CCAAGCTGTGTGACA
95148796 GGCCGTGTCCTCAAGCTGTGTGACA
1 GGCCGTGTCC-CAAGCTGTGTGACA
95148821 -GCCTGTGTCCCAAGCTGTGT
1 GGCC-GTGTCCCAAGCTGTGT
95148841 AAACCCAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
24 14 0.34
25 27 0.66
ACGTcount: A:0.16, C:0.29, G:0.31, T:0.24
Consensus pattern (24 bp):
GGCCGTGTCCCAAGCTGTGTGACA
Found at i:95168347 original size:46 final size:44
Alignment explanation
Indices: 95168280--95168577 Score: 199
Period size: 44 Copynumber: 6.9 Consensus size: 44
95168270 ATAATACAGG
*
95168280 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAA--TCAGA
* *
95168326 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAG-A-CAGTAA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAATCAG--A
* * * * * *
95168370 TCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAG-----GA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAATCAGA
* * * * *
95168409 TCGTATCTCTCTGA-AGTTACAGTAGAGA-AGATC--A-CATCAGG
1 TCTTATCTCCCTGAGA-TTACAGTGGA-ACAGATCAAAGAATCAGA
*
95168450 TCTTATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAA--TCAGA
* * * ** * *
95168496 TCTTATTTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA-GAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAG-AATCAGA
* * *
95168540 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGA
1 TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGA
95168578 CACTATCCTA
Statistics
Matches: 198, Mismatches: 37, Indels: 37
0.73 0.14 0.14
Matches are distributed among these distances:
37 1 0.01
38 1 0.01
39 23 0.12
40 1 0.01
41 27 0.14
42 4 0.02
43 1 0.01
44 69 0.35
45 1 0.01
46 69 0.35
47 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (44 bp):
TCTTATCTCCCTGAGATTACAGTGGAACAGATCAAAGAATCAGA
Found at i:95168397 original size:44 final size:46
Alignment explanation
Indices: 95168283--95168577 Score: 178
Period size: 46 Copynumber: 6.8 Consensus size: 46
95168273 ATACAGGTCT
* * * *
95168283 TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATGTCAGATCC
*
95168329 TATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACA-GT-A-ATCC
1 TATCTCCCTGAGATTACAGTGGAGCAGATCAAAGA-ATGTCAGATCC
* * * * *
95168373 TATCTCCTTGAGATTACAATGGAGCGGAT--TA-AA-G---GATCG
1 TATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATGTCAGATCC
* * * * * *
95168412 TATCTCTCTGA-AGTTACAGTAGAGAAGATC--A-CA--TCAGGTCT
1 TATCTCCCTGAGA-TTACAGTGGAGCAGATCAAAGAATGTCAGATCC
* * * *
95168453 TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCAGATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATGTCAGATCC
* * ** * *
95168499 TATTTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCA-G--AGATCT
1 TATCTCCCTGAGATTACAGTGGAGCAGATCAAAG-AATGTCAGATCC
* *
95168543 TATCTCCCTGAGATTACAGCGGAGCAGATCGAAGA
1 TATCTCCCTGAGATTACAGTGGAGCAGATCAAAGA
95168578 CACTATCCTA
Statistics
Matches: 195, Mismatches: 40, Indels: 31
0.73 0.15 0.12
Matches are distributed among these distances:
38 1 0.01
39 26 0.13
40 2 0.01
41 27 0.14
42 2 0.01
43 1 0.01
44 65 0.33
45 1 0.01
46 68 0.35
47 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (46 bp):
TATCTCCCTGAGATTACAGTGGAGCAGATCAAAGAATGTCAGATCC
Found at i:95168633 original size:86 final size:86
Alignment explanation
Indices: 95168538--95168990 Score: 276
Period size: 86 Copynumber: 5.2 Consensus size: 86
95168528 TGAAGCCAGA
* *
95168538 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACTATCCTATCTCCC-GAAGTTAC
1 GATCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGTCA-TATCCTATCTCCCTGAAGTTAC
95168602 AGTGGAGTGGATTAAAATAAAG
65 AGTGGAGTGGATTAAAATAAAG
* * * * * * * * *
95168624 GATCTTATCTCTCTGAGGTTACAGCAGAGTAGGTCGCA-TCA-AGTCTTATTTCCCTGAAGATGC
1 GATCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGTCATA-TCCTATCTCCCTGAAGTTAC
* * * *
95168687 AGTGGAATAGATTGAAAACAACG
65 AGTGGAGTGGATT-AAAATAAAG
* * ** * *
95168710 AATCTTAT-TCCCCT-AAAGTTGTAGTGGAATAGATGGAAGCGAAGTCACTATCCTATCTCCCTG
1 GATCTTATCT-CCCTGAGA-TTACAGCGGAGTAGAT-----CGAAGTCA-TATCCTATCTCCCTG
**
95168773 AAGTTACAGTGGAACGGATTAAAATAAAG
58 AAGTTACAGTGGAGTGGATTAAAATAAAG
* *** * ** * * *
95168802 GATCTTATCTCTCTGA-AGTTACAATAGAGTAGATCGCA-TCAGGTCTTATTTCCCTGAGGTTAC
1 GATCTTATCTCCCTGAGA-TTACAGCGGAGTAGATCGAAGTCATATCCTATCTCCCTGAAGTTAC
* * ** **
95168865 AG-CGAGTAGACCGAAGAATTGCA-
65 AGTGGAGTGGA-TTAA-AA-TAAAG
* * ** *
95168888 GATCTTATCTCCCTGAGGTTACAGCGGAGCAGATTAAAGACATAATCCTATCTCCCTGAAGTTAC
1 GATCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGTCAT-ATCCTATCTCCCTGAAGTTAC
*
95168953 AGTGGAGCGGATTAAAATAAAG
65 AGTGGAGTGGATTAAAATAAAG
* *
95168975 AATCTTATCTCTCTGA
1 GATCTTATCTCCCTGA
95168991 AGTGGCAGTA
Statistics
Matches: 265, Mismatches: 79, Indels: 45
0.68 0.20 0.12
Matches are distributed among these distances:
83 1 0.00
84 13 0.05
85 42 0.16
86 94 0.35
87 23 0.09
88 21 0.08
89 5 0.02
91 3 0.01
92 33 0.12
93 29 0.11
94 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.27
Consensus pattern (86 bp):
GATCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGTCATATCCTATCTCCCTGAAGTTACA
GTGGAGTGGATTAAAATAAAG
Found at i:95169005 original size:173 final size:174
Alignment explanation
Indices: 95168537--95169008 Score: 544
Period size: 178 Copynumber: 2.7 Consensus size: 174
95168527 TTGAAGCCAG
*
95168537 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACACT-ATCCTATCTCCC-GAAGTT
1 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACACTAATCCTATCTCCCTGAAGTT
* * * *
95168600 ACAGTGGAGTGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCAGAGTAGGTCGCATCA
66 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
* * **
95168665 AGTCTTATTTCCCTGAAGATGCAGTGGAATAGATTGAAAACAAC
131 AGTCTTATTTCCCTGAAGATACAGTCGAATAGACCGAAAACAAC
* * ** * ** *
95168709 -GAATCTTAT-TCCCCTAAAGTTGTAGTGGAATAGATGGAAGCGAAGTCACT-ATCCTATCTCCC
1 AG-ATCTTATCT-CCCTGAGGTTACAGCGGAGCAGAT-----CGAAGACACTAATCCTATCTCCC
* *
95168771 TGAAGTTACAGTGGAACGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAATAGAGTAGAT
59 TGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGAT
* * * * ***
95168836 CGCATCAGGTCTTATTTCCCTGAGGTTACAG-CGAGTAGACCGAAGAATTGC
124 CGCATCAAGTCTTATTTCCCTGAAGATACAGTCGAATAGACCGAA-AACAAC
**
95168887 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATTAAAGACA-TAATCCTATCTCCCTGAAGTT
1 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACACTAATCCTATCTCCCTGAAGTT
* **
95168951 ACAGTGGAGCGGATTAAAATAAAGAATCTTATCTCTCTGAAGTGGCAGTAGAGTAGAT
66 ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGAT
95169009 TACATCCAAG
Statistics
Matches: 247, Mismatches: 41, Indels: 23
0.79 0.13 0.07
Matches are distributed among these distances:
171 2 0.01
172 24 0.10
173 77 0.31
177 30 0.12
178 112 0.45
179 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (174 bp):
AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGACACTAATCCTATCTCCCTGAAGTT
ACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
AGTCTTATTTCCCTGAAGATACAGTCGAATAGACCGAAAACAAC
Found at i:95169319 original size:27 final size:27
Alignment explanation
Indices: 95169289--95169357 Score: 122
Period size: 27 Copynumber: 2.6 Consensus size: 27
95169279 TCAGAACCAC
95169289 TAGCCCAATAACCCAATAGCCTACCCT
1 TAGCCCAATAACCCAATAGCCTACCCT
95169316 TAGCCCAATAACCCAATAGCCTACCCT
1 TAGCCCAATAACCCAATAGCCTACCCT
*
95169343 CAGCCCAA-AACCCAA
1 TAGCCCAATAACCCAA
95169358 AACAAAAAAA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
26 7 0.17
27 34 0.83
ACGTcount: A:0.36, C:0.42, G:0.07, T:0.14
Consensus pattern (27 bp):
TAGCCCAATAACCCAATAGCCTACCCT
Found at i:95170496 original size:3 final size:3
Alignment explanation
Indices: 95170490--95170521 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
95170480 TTGTTTATTC
95170490 TAT TAT TAT TAT TAT TAT TAT TAT TACT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT T
95170522 TGTTTATGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:95171082 original size:18 final size:18
Alignment explanation
Indices: 95171059--95171093 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
95171049 TATACACCCA
*
95171059 TATATATGTACATATTTT
1 TATATATATACATATTTT
95171077 TATATATATACATATTT
1 TATATATATACATATTT
95171094 ATCGTTTCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.06, G:0.03, T:0.54
Consensus pattern (18 bp):
TATATATATACATATTTT
Found at i:95173367 original size:131 final size:132
Alignment explanation
Indices: 95173061--95173583 Score: 599
Period size: 132 Copynumber: 4.0 Consensus size: 132
95173051 TTTAGAAAGT
* * * * * *
95173061 ATGAGTGAAATTCTAAAGGAATCTTCGATCATTTTG-GACAAAC-AGGAAATCGTAACCCAGCAC
1 ATGAGTGAAATTCTAAAGGGATCTTCGATTACTTTGAG-CAAACGA-GAAATTGCAACCCAACAC
* * * * ** ** *
95173124 GATAGGGTACGTTTCCCCGAATTGCCAAACATCGAAT-ATTTCCTTTGTTTCGAAGAGTTTTTAG
64 GATAGGGCACGATTCCGCGAATTGCCAAATATCG-ATCATCGCCTTTGTTTTAAAGAATTTTTA-
95173188 AAA-AC
127 AAAGAC
* * * * *
95173193 ATGAGTGAAATTCAAAAGGGACCTTCGATTATTTTGAACAAACGAGAAATTGCAACCCAACATGA
1 ATGAGTGAAATTCTAAAGGGATCTTCGATTACTTTGAGCAAACGAGAAATTGCAACCCAACACGA
* *
95173258 TAGGGCACGATTCTGCGAATTGCCCAATATCGATCATCGCCTTTG-TTTAAAGAATTTTTAAAAG
66 TAGGGCACGATTCCGCGAATTGCCAAATATCGATCATCGCCTTTGTTTTAAAGAATTTTTAAAAG
95173322 AC
131 AC
* * *
95173324 ATGGGTGAAACTCTAAAGGGATCTTCGATTACTTTGAGCAAACGAGAAATTGCAACCCAACACGT
1 ATGAGTGAAATTCTAAAGGGATCTTCGATTACTTTGAGCAAACGAGAAATTGCAACCCAACACGA
* * * * * * *
95173389 TAGGGCACGATTCTGCGAATTGTCAAATATCGAACATCGCCCTCGTTTTAAAGGATTTTTAGAAG
66 TAGGGCACGATTCCGCGAATTGCCAAATATCGATCATCGCCTTTGTTTTAAAGAATTTTTAAAAG
95173454 AC
131 AC
* * * * * *
95173456 ATAAGTGAAATTTTGAAGGGATATTCGATTACTTTGAGCAAACGCGAAATTGCAACCCAACACGT
1 ATGAGTGAAATTCTAAAGGGATCTTCGATTACTTTGAGCAAACGAGAAATTGCAACCCAACACGA
* *
95173521 TAGGGCACGATTCCGCGAATTGCCAAATATCAAATC-TCGTCTTTGTTTTAAAGAATTTTTAAA
66 TAGGGCACGATTCCGCGAATTGCCAAATATC-GATCATCGCCTTTGTTTTAAAGAATTTTTAAA
95173584 TGAATAGTTA
Statistics
Matches: 334, Mismatches: 51, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
130 3 0.01
131 113 0.34
132 215 0.64
133 3 0.01
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (132 bp):
ATGAGTGAAATTCTAAAGGGATCTTCGATTACTTTGAGCAAACGAGAAATTGCAACCCAACACGA
TAGGGCACGATTCCGCGAATTGCCAAATATCGATCATCGCCTTTGTTTTAAAGAATTTTTAAAAG
AC
Found at i:95177186 original size:22 final size:22
Alignment explanation
Indices: 95177161--95177203 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
95177151 TATCCAAATA
95177161 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* * *
95177183 ATAATAGTAAAATGGTAGCAA
1 ATAACAATAAAATAGTAGCAA
95177204 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:95179337 original size:9 final size:9
Alignment explanation
Indices: 95179323--95179358 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
95179313 GTCCACCCAT
95179323 GCCCATGCC
1 GCCCATGCC
95179332 GCCCATGCC
1 GCCCATGCC
*
95179341 GCCCATACC
1 GCCCATGCC
*
95179350 CCCCATGCC
1 GCCCATGCC
95179359 CTCGAATAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.14, C:0.58, G:0.17, T:0.11
Consensus pattern (9 bp):
GCCCATGCC
Found at i:95180657 original size:36 final size:36
Alignment explanation
Indices: 95180617--95180687 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
95180607 TTCAGATTAA
95180617 TCCATCCTCTCTAGATTCTATTTGATTTATGTTATT
1 TCCATCCTCTCTAGATTCTATTTGATTTATGTTATT
*
95180653 TCCATCCTCTCTAGATTCTCTTTGATTTATGTTAT
1 TCCATCCTCTCTAGATTCTATTTGATTTATGTTAT
95180688 CAACACCTAC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.18, C:0.21, G:0.08, T:0.52
Consensus pattern (36 bp):
TCCATCCTCTCTAGATTCTATTTGATTTATGTTATT
Found at i:95187338 original size:47 final size:47
Alignment explanation
Indices: 95187224--95187393 Score: 169
Period size: 45 Copynumber: 3.7 Consensus size: 47
95187214 GCCCCTAAGT
* * * *
95187224 GAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCC--AAGC
95187270 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATCTC-A-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACATC-CAAGC
* *
95187317 GAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCATAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA-AGC
95187362 GAACTCGGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC
95187394 TCAACCATCC
Statistics
Matches: 105, Mismatches: 6, Indels: 24
0.78 0.04 0.18
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 2 0.02
45 29 0.28
46 27 0.26
47 29 0.28
48 2 0.02
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCAAGC
Found at i:95187393 original size:92 final size:93
Alignment explanation
Indices: 95187224--95187393 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
95187214 GCCCCTAAGT
* *
95187224 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
95187289 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
95187317 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
95187381 CGAGTTCGGATGC
66 CGAGTTCGGATGC
95187394 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 35 0.47
93 39 0.53
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:95187844 original size:30 final size:30
Alignment explanation
Indices: 95187810--95187869 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
95187800 ATTTAATACG
95187810 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
95187840 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
95187870 GGCTCGGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:95194328 original size:93 final size:93
Alignment explanation
Indices: 95194220--95194390 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
95194210 GCCCCTAAGT
* *
95194220 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
95194285 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
95194313 GAACTCGGACTCAACTCAACGAGTTCGGACATTCTCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
95194378 CGAGTTCGGATGC
66 CGAGTTCGGATGC
95194391 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:95194387 original size:46 final size:46
Alignment explanation
Indices: 95194215--95194387 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
95194205 AACCCGCCCC
* * * * *
95194215 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
95194261 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACATCCA
* * *
95194309 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCTCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
95194354 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
95194388 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 60 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCA
Found at i:95194843 original size:30 final size:30
Alignment explanation
Indices: 95194809--95194868 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
95194799 ATTTAATATG
95194809 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
95194839 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
95194869 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:95202522 original size:22 final size:22
Alignment explanation
Indices: 95202494--95202549 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
95202484 GAATAGTACC
* *
95202494 ACACGCCCGTGTGGCTTATGTG
1 ACACGCCCGTGTGGCTGATATG
*
95202516 ACACGCCCGTGTGTCTGATATG
1 ACACGCCCGTGTGGCTGATATG
95202538 ACACGCCCGTGT
1 ACACGCCCGTGT
95202550 CATCAACTCG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.16, C:0.30, G:0.29, T:0.25
Consensus pattern (22 bp):
ACACGCCCGTGTGGCTGATATG
Found at i:95205502 original size:65 final size:65
Alignment explanation
Indices: 95205428--95205551 Score: 162
Period size: 65 Copynumber: 1.9 Consensus size: 65
95205418 AGTATTCTAT
* **
95205428 TAAGAATCACACGGCC-TTGACACACGGGCGTGTCATA-TGGCCGTGGGCTAAAGTCAGTAGCTA
1 TAAGAATCACACGGCCATAGA-ACACGGGCGTG-CATATTGGCCGTGGGAGAAAGTCAGTAGCTA
95205491 GC
64 GC
* * *
95205493 TAAGTATCACATGGCCATAGAACACGGGCGTGCCTATTGGCCGTGGGAGAAAGTCAGTA
1 TAAGAATCACACGGCCATAGAACACGGGCGTGCATATTGGCCGTGGGAGAAAGTCAGTA
95205552 TGGTTACTCT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
64 3 0.06
65 45 0.88
66 3 0.06
ACGTcount: A:0.27, C:0.23, G:0.30, T:0.20
Consensus pattern (65 bp):
TAAGAATCACACGGCCATAGAACACGGGCGTGCATATTGGCCGTGGGAGAAAGTCAGTAGCTAGC
Found at i:95205966 original size:16 final size:16
Alignment explanation
Indices: 95205945--95205979 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
95205935 GTTCCATCGG
*
95205945 CCGAAGTCGGAATACA
1 CCGAAGCCGGAATACA
95205961 CCGAAGCCGGAATACA
1 CCGAAGCCGGAATACA
95205977 CCG
1 CCG
95205980 TAAGGGTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.34, C:0.31, G:0.26, T:0.09
Consensus pattern (16 bp):
CCGAAGCCGGAATACA
Found at i:95206855 original size:16 final size:16
Alignment explanation
Indices: 95206834--95206896 Score: 58
Period size: 16 Copynumber: 3.9 Consensus size: 16
95206824 CCCTAATTTC
95206834 TCCTTTTCTTTTTCTT
1 TCCTTTTCTTTTTCTT
*
95206850 TCCTTTT-TCTTTCTT
1 TCCTTTTCTTTTTCTT
*
95206865 TCCTATTTC-GTTTCTT
1 TCCT-TTTCTTTTTCTT
* *
95206881 TCTCTGTTCTTATTCT
1 TC-CTTTTCTTTTTCT
95206897 CTATTTTGTT
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
15 11 0.29
16 21 0.55
17 6 0.16
ACGTcount: A:0.03, C:0.25, G:0.03, T:0.68
Consensus pattern (16 bp):
TCCTTTTCTTTTTCTT
Found at i:95206864 original size:15 final size:15
Alignment explanation
Indices: 95206834--95206882 Score: 62
Period size: 15 Copynumber: 3.1 Consensus size: 15
95206824 CCCTAATTTC
*
95206834 TCCTTTTCTTTTTCTT
1 TCCTTTT-TCTTTCTT
95206850 TCCTTTTTCTTTCTT
1 TCCTTTTTCTTTCTT
*
95206865 TCCTATTTCGTTTCTT
1 TCCTTTTTC-TTTCTT
95206881 TC
1 TC
95206883 TCTGTTCTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 15 0.50
16 15 0.50
ACGTcount: A:0.02, C:0.27, G:0.02, T:0.69
Consensus pattern (15 bp):
TCCTTTTTCTTTCTT
Found at i:95206959 original size:18 final size:18
Alignment explanation
Indices: 95206931--95207000 Score: 59
Period size: 16 Copynumber: 4.3 Consensus size: 18
95206921 ATTTATTTTA
95206931 CTTATTATA-T-T-ATAT
1 CTTATTATATTATAATAT
95206946 CTTATTATATTATTAA-A-
1 CTTATTATATTA-TAATAT
95206963 -TTATTATA--ATAATAT
1 CTTATTATATTATAATAT
95206978 CTTATATATATTA-AATAT
1 CTTAT-TATATTATAATAT
95206996 CTTAT
1 CTTAT
95207001 ACTTAAAATA
Statistics
Matches: 45, Mismatches: 0, Indels: 17
0.73 0.00 0.27
Matches are distributed among these distances:
13 3 0.07
14 2 0.04
15 9 0.20
16 13 0.29
17 4 0.09
18 12 0.27
19 2 0.04
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (18 bp):
CTTATTATATTATAATAT
Found at i:95207441 original size:11 final size:11
Alignment explanation
Indices: 95207425--95207456 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
95207415 TTATATGCAT
95207425 AAGAAGTATAA
1 AAGAAGTATAA
95207436 AAGAAGTATAA
1 AAGAAGTATAA
95207447 AAGAAGTATA
1 AAGAAGTATA
95207457 GATCTAATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.19, T:0.19
Consensus pattern (11 bp):
AAGAAGTATAA
Found at i:95211064 original size:20 final size:20
Alignment explanation
Indices: 95211039--95211082 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
95211029 GGTTTATTGT
95211039 TTTTTTATT-TCTTTTCTTCC
1 TTTTTTATTAT-TTTTCTTCC
*
95211059 TTTTTTATTATTTTTCTTTC
1 TTTTTTATTATTTTTCTTCC
95211079 TTTT
1 TTTT
95211083 CAAAACTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 21 0.95
21 1 0.05
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.80
Consensus pattern (20 bp):
TTTTTTATTATTTTTCTTCC
Found at i:95211863 original size:3 final size:3
Alignment explanation
Indices: 95211857--95212061 Score: 54
Period size: 3 Copynumber: 68.3 Consensus size: 3
95211847 TTGTTATCAC
* * *
95211857 TAT TAT T-T CTAT TAT T-T CTAT TAT CAA TAT TAT TAT TAT TAT TGT
1 TAT TAT TAT -TAT TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * * ** *
95211902 TGT TAT TAT TAT TAT GAT TCT T-T T-T TGT TAA TAT TGC TAT TAT AAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
95211948 TA- TAC T-T TAT TTT TGT GT-T TATT TATT TAT TCAT T-T TAT TAT TAGT
1 TAT TAT TAT TAT TAT TAT -TAT TA-T TA-T TAT T-AT TAT TAT TAT TA-T
* * * * * *
95211994 CCAT TAA T-T TAT TAT TAC TAA CA- TAT TAT TAT TA- TATT TAT TAACG
1 -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT T-A-T
95212040 TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT T
95212062 TACCATTATC
Statistics
Matches: 151, Mismatches: 31, Indels: 40
0.68 0.14 0.18
Matches are distributed among these distances:
2 16 0.11
3 114 0.75
4 19 0.13
5 2 0.01
ACGTcount: A:0.29, C:0.06, G:0.04, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:95212038 original size:23 final size:23
Alignment explanation
Indices: 95212002--95212059 Score: 82
Period size: 23 Copynumber: 2.5 Consensus size: 23
95211992 GTCCATTAAT
*
95212002 TTATTATTACTAACATATTATTA
1 TTATTATTATTAACATATTATTA
*
95212025 TTA-TATTTATTAACGTATTATTA
1 TTATTA-TTATTAACATATTATTA
95212048 TTATTATTATTA
1 TTATTATTATTA
95212060 TTTACCATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
22 2 0.06
23 27 0.87
24 2 0.06
ACGTcount: A:0.36, C:0.05, G:0.02, T:0.57
Consensus pattern (23 bp):
TTATTATTATTAACATATTATTA
Found at i:95212188 original size:19 final size:19
Alignment explanation
Indices: 95212161--95212197 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
95212151 TATTTCACTA
95212161 TTATCATTTTTTATTACTG
1 TTATCATTTTTTATTACTG
*
95212180 TTATTATTTTTTATTACT
1 TTATCATTTTTTATTACT
95212198 TTCTATCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.08, G:0.03, T:0.68
Consensus pattern (19 bp):
TTATCATTTTTTATTACTG
Found at i:95216330 original size:24 final size:26
Alignment explanation
Indices: 95216292--95216343 Score: 90
Period size: 24 Copynumber: 2.1 Consensus size: 26
95216282 TTGTCTCTAT
95216292 ATAAAAAAGTAAGATTTGATAGGGCA
1 ATAAAAAAGTAAGATTTGATAGGGCA
95216318 ATAAAAAA-T-AGATTTGATAGGGCA
1 ATAAAAAAGTAAGATTTGATAGGGCA
95216342 AT
1 AT
95216344 TGTTATTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 17 0.65
25 1 0.04
26 8 0.31
ACGTcount: A:0.50, C:0.04, G:0.21, T:0.25
Consensus pattern (26 bp):
ATAAAAAAGTAAGATTTGATAGGGCA
Found at i:95222526 original size:37 final size:37
Alignment explanation
Indices: 95222476--95222546 Score: 142
Period size: 37 Copynumber: 1.9 Consensus size: 37
95222466 AAATTTGAAT
95222476 AACATATTGCCCCATATGTTTATTTGTTGTCAATATA
1 AACATATTGCCCCATATGTTTATTTGTTGTCAATATA
95222513 AACATATTGCCCCATATGTTTATTTGTTGTCAAT
1 AACATATTGCCCCATATGTTTATTTGTTGTCAAT
95222547 GTTAAACCTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.44
Consensus pattern (37 bp):
AACATATTGCCCCATATGTTTATTTGTTGTCAATATA
Found at i:95223980 original size:23 final size:23
Alignment explanation
Indices: 95223932--95223982 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
95223922 CTGATTTAAC
* * *
95223932 TTTTTTAAATAATTATGTTTATT
1 TTTTTTAAAAAATTAAGGTTATT
95223955 TTTTTTAAAAAATTAAGAGTTATT
1 TTTTTTAAAAAATTAAG-GTTATT
95223979 TTTT
1 TTTT
95223983 AAATTTAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 15 0.62
24 9 0.38
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (23 bp):
TTTTTTAAAAAATTAAGGTTATT
Found at i:95224986 original size:25 final size:25
Alignment explanation
Indices: 95224952--95225001 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
95224942 CATTTATACC
95224952 CAATATTTATGGATCCAAAGAGGCT
1 CAATATTTATGGATCCAAAGAGGCT
95224977 CAATATTTATGGATCCAAAGAGGCT
1 CAATATTTATGGATCCAAAGAGGCT
95225002 GAGTTTTAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (25 bp):
CAATATTTATGGATCCAAAGAGGCT
Found at i:95232828 original size:5 final size:5
Alignment explanation
Indices: 95232815--95232872 Score: 50
Period size: 5 Copynumber: 11.8 Consensus size: 5
95232805 AAGAGAATGA
* * *
95232815 AAAAA AAAAG -AAA- AAAAG AAAAG AAAAG AAAAG TTAAAAG AACAT AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG --AAAAG AAAAG AAAAG
95232865 AAAA- AAAA
1 AAAAG AAAA
95232873 TAAATTGCTT
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
4 10 0.23
5 29 0.66
7 5 0.11
ACGTcount: A:0.81, C:0.02, G:0.12, T:0.05
Consensus pattern (5 bp):
AAAAG
Found at i:95236719 original size:3 final size:3
Alignment explanation
Indices: 95236711--95236799 Score: 169
Period size: 3 Copynumber: 29.7 Consensus size: 3
95236701 AATAGAAAGA
95236711 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
*
95236759 AAG AAG AAG AAG AAG AAG AAG AAG AAA AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AA
95236800 AACCTTAGAG
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
3 84 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:95239098 original size:15 final size:15
Alignment explanation
Indices: 95239055--95239099 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 15
95239045 ACGAAACAGT
*
95239055 ATAAATGATATACAA
1 ATAAATAATATACAA
95239070 A-ACAATATATATACAA
1 ATA-AATA-ATATACAA
95239086 ATAAATAATATACA
1 ATAAATAATATACA
95239100 CAAAATACAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 1 0.04
15 11 0.42
16 13 0.50
17 1 0.04
ACGTcount: A:0.62, C:0.09, G:0.02, T:0.27
Consensus pattern (15 bp):
ATAAATAATATACAA
Found at i:95239150 original size:23 final size:21
Alignment explanation
Indices: 95239120--95239162 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
95239110 ATAGCTTAAT
95239120 ATAAATAATATATATAAAAATA
1 ATAAATAATATATA-AAAAATA
*
95239142 ATAATATAATATTTAAAAAAT
1 ATAA-ATAATATATAAAAAAT
95239163 GTTCATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (21 bp):
ATAAATAATATATAAAAAATA
Found at i:95239758 original size:42 final size:41
Alignment explanation
Indices: 95239696--95239821 Score: 161
Period size: 42 Copynumber: 3.0 Consensus size: 41
95239686 GGGGTTAATG
*
95239696 GGGTGATTTAGTGGGATGATGGAGTTAGTGGCAAGTTTAGT
1 GGGTGATTTAGTGGGGTGATGGAGTTAGTGGCAAGTTTAGT
95239737 AGGGTGATTTAGTGGGGTGATGGAGTTAGTGGCAAG--TAG-
1 -GGGTGATTTAGTGGGGTGATGGAGTTAGTGGCAAGTTTAGT
*
95239776 GGTGATGGAGTTAGTGGGGTGATGGAGTTAGTGGTC-AGTTTAGT
1 GG-G-T-GATTTAGTGGGGTGATGGAGTTAGTGG-CAAGTTTAGT
95239820 GG
1 GG
95239822 TGTGTTAATT
Statistics
Matches: 75, Mismatches: 2, Indels: 12
0.84 0.02 0.13
Matches are distributed among these distances:
38 2 0.03
39 1 0.01
40 4 0.05
41 28 0.37
42 35 0.47
43 3 0.04
44 2 0.03
ACGTcount: A:0.21, C:0.02, G:0.45, T:0.32
Consensus pattern (41 bp):
GGGTGATTTAGTGGGGTGATGGAGTTAGTGGCAAGTTTAGT
Found at i:95239767 original size:17 final size:17
Alignment explanation
Indices: 95239745--95239809 Score: 67
Period size: 17 Copynumber: 3.4 Consensus size: 17
95239735 GTAGGGTGAT
95239745 TTAGTGGGGTGATGGAG
1 TTAGTGGGGTGATGGAG
95239762 TTAGTGGCAAGTAGGGTGATGGAG
1 TTAGT-G---G--G-GTGATGGAG
95239786 TTAGTGGGGTGATGGAG
1 TTAGTGGGGTGATGGAG
95239803 TTAGTGG
1 TTAGTGG
95239810 TCAGTTTAGT
Statistics
Matches: 41, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
17 21 0.51
18 2 0.05
20 1 0.02
21 1 0.02
23 2 0.05
24 14 0.34
ACGTcount: A:0.20, C:0.02, G:0.49, T:0.29
Consensus pattern (17 bp):
TTAGTGGGGTGATGGAG
Found at i:95240161 original size:17 final size:17
Alignment explanation
Indices: 95240139--95240175 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
95240129 GATCTGCTCC
95240139 ATAGCCGATACATGGAG
1 ATAGCCGATACATGGAG
95240156 ATAGCCGATACATGGAG
1 ATAGCCGATACATGGAG
95240173 ATA
1 ATA
95240176 AGACTCGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.38, C:0.16, G:0.27, T:0.19
Consensus pattern (17 bp):
ATAGCCGATACATGGAG
Found at i:95240194 original size:62 final size:62
Alignment explanation
Indices: 95240094--95240220 Score: 229
Period size: 62 Copynumber: 2.0 Consensus size: 62
95240084 AATCTGCTCC
95240094 ATAGCCGATACATGGAGATAAGACTCGCCATCTTTGATCTGCTCCATAGCCGATACATGGAG
1 ATAGCCGATACATGGAGATAAGACTCGCCATCTTTGATCTGCTCCATAGCCGATACATGGAG
*
95240156 ATAGCCGATACATGGAGATAAGACTCGCCAT-TTCTGATCTGCTCCATAGTCGATACATGGAG
1 ATAGCCGATACATGGAGATAAGACTCGCCATCTT-TGATCTGCTCCATAGCCGATACATGGAG
95240218 ATA
1 ATA
95240221 AGATCTGTAA
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
61 2 0.03
62 61 0.97
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (62 bp):
ATAGCCGATACATGGAGATAAGACTCGCCATCTTTGATCTGCTCCATAGCCGATACATGGAG
Found at i:95240388 original size:81 final size:81
Alignment explanation
Indices: 95240290--95240440 Score: 266
Period size: 81 Copynumber: 1.9 Consensus size: 81
95240280 TCTGCTCCGC
* *
95240290 TGCAACTTCAGGGAGATAAGATTGGTGGTTAAAATATGCTCCATAGCCGATACATGGAGATAAGA
1 TGCAACTTCAGGGAGATAAGACTGGTGGCTAAAATATGCTCCATAGCCGATACATGGAGATAAGA
95240355 CTCGCTATTTCTGATT
66 CTCGCTATTTCTGATT
* *
95240371 TGCAACTTCAGGGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
1 TGCAACTTCAGGGAGATAAGACTGGTGGCTAAAATATGCTCCATAGCCGATACATGGAGATAAGA
95240436 CTCGC
66 CTCGC
95240441 CATCTTTGAT
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
81 66 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (81 bp):
TGCAACTTCAGGGAGATAAGACTGGTGGCTAAAATATGCTCCATAGCCGATACATGGAGATAAGA
CTCGCTATTTCTGATT
Found at i:95240623 original size:133 final size:133
Alignment explanation
Indices: 95240449--95240700 Score: 407
Period size: 133 Copynumber: 1.9 Consensus size: 133
95240439 GCCATCTTTG
* * *
95240449 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTGA-TCCATAGCCGATA
1 ATCTGCTCCATAGCAGATACATGAAGATAAGACTCACCATTTTTGATCT-ACTCCATAGCCGATA
* * *
95240513 CATGAAGATAAGATCTGTAATTTTTAGTCTGCTTCCTGCAACTTCAGGAAGATAAGGCTGGTGGC
65 CATGAAGATAAGATCTATAATTTTCAGTCTGCTTCCTACAACTTCAGGAAGATAAGGCTGGTGGC
95240578 TAAA
130 TAAA
*
95240582 ATCTGCTCCATAGTAGATACATGAAGATAAGACTCACCATTTTTGATCTACTCCATAGCCGATAC
1 ATCTGCTCCATAGCAGATACATGAAGATAAGACTCACCATTTTTGATCTACTCCATAGCCGATAC
* *
95240647 ATGGAGATAAGATCTATAATTTTCAGTCTGTTTCCTACAACTTCAGGAAGATAA
66 ATGAAGATAAGATCTATAATTTTCAGTCTGCTTCCTACAACTTCAGGAAGATAA
95240701 AACCTGTATC
Statistics
Matches: 109, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
132 1 0.01
133 108 0.99
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.30
Consensus pattern (133 bp):
ATCTGCTCCATAGCAGATACATGAAGATAAGACTCACCATTTTTGATCTACTCCATAGCCGATAC
ATGAAGATAAGATCTATAATTTTCAGTCTGCTTCCTACAACTTCAGGAAGATAAGGCTGGTGGCT
AAA
Found at i:95240669 original size:45 final size:45
Alignment explanation
Indices: 95240404--95240658 Score: 227
Period size: 45 Copynumber: 5.7 Consensus size: 45
95240394 GGTGGCTAAA
*
95240404 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATCTTTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTG
95240449 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTG
* * **
95240494 ATCTGATCCATAGCCGATACATGAAGATAAGA-TCTGTAATTTTT-
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCCATTTTTG
* * * ***** ***
95240538 AGTCTGCTTCC-T-G-CAACTTCA-GGAAGATAAGGCT-GGTGGCTAAA
1 A-TCTGC-TCCATAGCCGA-TACATGG-AGATAAGACTCGCCATTTTTG
** * *
95240582 ATCTGCTCCATAGTAGATACATGAAGATAAGACTCACCATTTTTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTG
*
95240627 ATCTACTCCATAGCCGATACATGGAGATAAGA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGA
95240659 TCTATAATTT
Statistics
Matches: 163, Mismatches: 35, Indels: 24
0.73 0.16 0.11
Matches are distributed among these distances:
42 3 0.02
43 11 0.07
44 28 0.17
45 118 0.72
46 3 0.02
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.28
Consensus pattern (45 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTG
Found at i:95240780 original size:177 final size:176
Alignment explanation
Indices: 95240371--95240877 Score: 644
Period size: 177 Copynumber: 2.9 Consensus size: 176
95240361 ATTTCTGATT
95240371 TGCAACTTCAGGGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
1 TGCAACTTCAGGGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
* * *** * * *
95240436 CTCGCCATCTTTGATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGA-TCTGA
66 CTCGCCATTTTTGATCTACTCCATAGCCGATACATGGAGATAAGA-TCTATAATTTTCAGTCTGT
* * * * * * *
95240500 TCCATAGCCGA-TACATGAAGATAAGATCTGTAATTTTTAGTCTGCTTCC
130 TCC-TA--CAACTTCAGGAAGATAAAACCTGTAATCTTCAGTCTGCTTCC
* ** *
95240549 TGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGTAGATACATGAAGATAAGA
1 TGCAACTTCAGGGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
*
95240614 CTCACCATTTTTGATCTACTCCATAGCCGATACATGGAGATAAGATCTATAATTTTCAGTCTGTT
66 CTCGCCATTTTTGATCTACTCCATAGCCGATACATGGAGATAAGATCTATAATTTTCAGTCTG-T
*
95240679 TCCTACAACTTCAGGAAGATAAAACCTGT-ATCTTCAGTTTG-TTCCGC
130 TCCTACAACTTCAGGAAGATAAAACCTGTAATCTTCAGTCTGCTT-C-C
* * *
95240726 TGCAACTTCAGGGAGATAAGACTGGTGGCTAAAATCTACTCCATAACCGATACATGGAGATAAGA
1 TGCAACTTCAGGGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
* * * * *
95240791 CTCGCCATTTCTGATCTACTTCAGAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTTTGCT
66 CTCGCCATTTTTGATCTACTCCATAGCCGATACATGGAGATAAGATCTATAATTTTCAGTCTG-T
*
95240856 TCCTGCAACTTCAGGAAGATAA
130 TCCTACAACTTCAGGAAGATAA
95240878 GGCTGGTGGC
Statistics
Matches: 288, Mismatches: 36, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
175 2 0.01
176 12 0.04
177 162 0.56
178 109 0.38
179 3 0.01
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (176 bp):
TGCAACTTCAGGGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
CTCGCCATTTTTGATCTACTCCATAGCCGATACATGGAGATAAGATCTATAATTTTCAGTCTGTT
CCTACAACTTCAGGAAGATAAAACCTGTAATCTTCAGTCTGCTTCC
Found at i:95240821 original size:310 final size:308
Alignment explanation
Indices: 95240371--95241410 Score: 1145
Period size: 310 Copynumber: 3.4 Consensus size: 308
95240361 ATTTCTGATT
* ** * * * *
95240371 TGCAACTTCAGGGAGAT-AAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAG
1 TGCAACTTCAGGAAGATAAAACCTGGTAGCTAAAATCTGCTCCATAGTCAATACAGGGAGATAAG
***
95240435 AC-TCGCCATCTTTGATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTTGATCTG
66 ACTTC-CC-T-TAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCA-TTTTGATCT-
* * *
95240499 ATCCATAGCCGATACATGAAGATAAGATCTGTAATTTTTAGTCTGCTTCCTGCAACTTCAGGAAG
126 ATTCATAGCCGATACATGAAGATAAGATCTGTAATTTTCAGTTTGCTTCCTGCAACTTCAGGAAG
** * * *
95240564 ATAAGGCTGGTGGCTAAAATCTGCTCCATAGTAGATACATGAAGATAAGACTCACCATTTTTGAT
191 ATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGAT
* *
95240629 CTACTCCATAGCCGATACATGGAGATAAGATCTATAATTTTCAGTCTGTTTCC
256 CTACTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCC
* * ** * * * * *
95240682 TACAACTTCAGGAAGATAAAACCT-GTATCTTCAGTTTGTTCCGCT-G-CAACTTCAGGGAGATA
1 TGCAACTTCAGGAAGATAAAACCTGGTAGCTAAAATCTGCTCC-ATAGTCAA-TACAGGGAGATA
** * *
95240744 AGACTGGTGGC-TAAAATCTACTCCATAACCGATACATGGAGATAAGACTCGCCATTTCTGATCT
64 AGACT--TCCCTTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTT-TGATCT
* *
95240808 ACTTCAGAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTTTGCTTCCTGCAACTTCAGGAA
126 A-TTCATAGCCGATACATGAAGATAAGATCTGTAATTTTCAGTTTGCTTCCTGCAACTTCAGGAA
95240873 GATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGA
190 GATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGA
* *
95240938 TCTGCTCCATAGCCGATACATGAAGATAAGATCTGTAATTTTCAGTCTGCTTCC
255 TCTACTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCC
* ** * * *
95240992 TGCAACTTCAAGAAGAT-AAGGCTGGTGGCTAAAATCTGCTCCATAGTCGATACATGGAGATAAG
1 TGCAACTTCAGGAAGATAAAACCTGGTAGCTAAAATCTGCTCCATAGTCAATACAGGGAGATAAG
*** * ** * *
95241056 ACTTCCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAATA-TCTGTAATTTTCAGTCTG
66 ACTTCCC--TTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCCATTTTGA-TCTA
* * * * * * *
95241120 TTCCTA--CAACTTCAGGAAGATAAAATCTGT-ATCTTCAGTTTG-TTCCGCTGCAACTTCAGGG
127 TTCATAGCCGA-TACATGAAGATAAGATCTGTAATTTTCAGTTTGCTT-C-CTGCAACTTCAGGA
* * *
95241181 AGATAAGACTGGTGGCTAAAATCTACTCCATAACCGATACATGGAGATAAGACTCGCCATTTCTG
189 AGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTG
*
95241246 ATCTACTCCAGAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCC
254 ATCTACTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCC
** * * * * *
95241301 TGCAACTTCAGGAAGAT-AAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGAAGATAAG
1 TGCAACTTCAGGAAGATAAAACCTGGTAGCTAAAATCTGCTCCATAGTCAATACAGGGAGATAAG
***
95241365 AC-TCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAAGA
66 ACTTC-CC--TTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
95241411 TCTGTAATTT
Statistics
Matches: 627, Mismatches: 82, Indels: 42
0.83 0.11 0.06
Matches are distributed among these distances:
307 2 0.00
308 18 0.03
309 255 0.41
310 264 0.42
311 81 0.13
312 5 0.01
313 1 0.00
314 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.29
Consensus pattern (308 bp):
TGCAACTTCAGGAAGATAAAACCTGGTAGCTAAAATCTGCTCCATAGTCAATACAGGGAGATAAG
ACTTCCCTTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTTGATCTATTCA
TAGCCGATACATGAAGATAAGATCTGTAATTTTCAGTTTGCTTCCTGCAACTTCAGGAAGATAAG
GCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCTACT
CCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCC
Found at i:95240832 original size:133 final size:133
Alignment explanation
Indices: 95240725--95241142 Score: 696
Period size: 133 Copynumber: 3.2 Consensus size: 133
95240715 GTTTGTTCCG
* * * *
95240725 CTGCAACTTCAGGGAGATAAGACTGGTGGCTAAAATCTACTCCATAACCGATACATGGAGATAAG
1 CTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAG
* * * *
95240790 ACTCGCCATTTCTGATCTACTTCAGAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTTTGC
66 ACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGC
95240855 TTC
131 TTC
95240858 CTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAG
1 CTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAG
*
95240923 ACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGAAGATAAGATCTGTAATTTTCAGTCTGC
66 ACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGC
95240988 TTC
131 TTC
* *
95240991 CTGCAACTTCAAGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGTCGATACATGGAGATAAG
1 CTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAG
*
95241056 ACTTC-CCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAATATCTGTAATTTTCAGTCTG
66 AC-TCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTG
95241120 -TTC
130 CTTC
*
95241123 CTACAACTTCAGGAAGATAA
1 CTGCAACTTCAGGAAGATAA
95241143 AATCTGTATC
Statistics
Matches: 269, Mismatches: 15, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
132 21 0.08
133 246 0.91
134 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (133 bp):
CTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAG
ACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGC
TTC
Found at i:95240943 original size:45 final size:45
Alignment explanation
Indices: 95240892--95241099 Score: 164
Period size: 45 Copynumber: 4.7 Consensus size: 45
95240882 GGTGGCTAAA
95240892 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTG
* ** *
95240937 ATCTGCTCCATAGCCGATACATGAAGATAAGA-TCTGTAATTT-TC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCCATTTCTG
* * * * * * ** *
95240981 AGTCTGCTTCC-T-G-CAACTTCAAGAAGATAAGGCT-G--GTGGCTAAA
1 A-TCTGC-TCCATAGCCGA-TACATGGAGATAAGACTCGCCATTTCT--G
*
95241025 ATCTGCTCCATAGTCGATACATGGAGATAAGACTTC-CCATTTCTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGAC-TCGCCATTTCTG
95241070 ATCTGCTCCATAGCCGATACATGGAGATAA
1 ATCTGCTCCATAGCCGATACATGGAGATAA
95241100 TATCTGTAAT
Statistics
Matches: 126, Mismatches: 22, Indels: 30
0.71 0.12 0.17
Matches are distributed among these distances:
41 1 0.01
42 4 0.03
43 9 0.07
44 31 0.25
45 75 0.60
46 3 0.02
47 3 0.02
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (45 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTG
Found at i:95241185 original size:44 final size:43
Alignment explanation
Indices: 95241092--95241186 Score: 120
Period size: 44 Copynumber: 2.2 Consensus size: 43
95241082 GCCGATACAT
* *
95241092 GGAGATAATATCTGTAATTTTCAGTCTGTTCCTACAACTTCAG
1 GGAGATAAAATCTGTAATCTTCAGTCTGTTCCTACAACTTCAG
* * *
95241135 GAAGATAAAATCTGT-ATCTTCAGTTTGTTCCGCTGCAACTTCAG
1 GGAGATAAAATCTGTAATCTTCAGTCTGTT-C-CTACAACTTCAG
95241179 GGAGATAA
1 GGAGATAA
95241187 GACTGGTGGC
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
42 12 0.27
43 14 0.32
44 18 0.41
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (43 bp):
GGAGATAAAATCTGTAATCTTCAGTCTGTTCCTACAACTTCAG
Found at i:95241187 original size:176 final size:177
Alignment explanation
Indices: 95240959--95241319 Score: 550
Period size: 176 Copynumber: 2.0 Consensus size: 177
95240949 GCCGATACAT
* * *
95240959 GAAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAAGAAGATAAGGCTGGTGGCTAA
1 GAAGATAAAATCTGTAATCTTCAGTCTGCTTCCTGCAACTTCAAGAAGATAAGACTGGTGGCTAA
* ** * *
95241024 AATCTGCTCCATAGTCGATACATGGAGATAAGACTTC-CCATTTCTGATCTGCTCCATAGCCGAT
66 AATCTACTCCATAACCGATACATGGAGATAAGAC-TCGCCATTTCTGATCTACTCCAGAGCCGAT
*
95241088 ACATGGAGATAATATCTGTAATTTTCAGTCTG-TTCCTACAACTTCAG
130 ACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTACAACTTCAG
* * *
95241135 GAAGATAAAATCTGT-ATCTTCAGTTTG-TTCCGCTGCAACTTCAGGGAGATAAGACTGGTGGCT
1 GAAGATAAAATCTGTAATCTTCAGTCTGCTT-C-CTGCAACTTCAAGAAGATAAGACTGGTGGCT
95241198 AAAATCTACTCCATAACCGATACATGGAGATAAGACTCGCCATTTCTGATCTACTCCAGAGCCGA
64 AAAATCTACTCCATAACCGATACATGGAGATAAGACTCGCCATTTCTGATCTACTCCAGAGCCGA
*
95241263 TACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAG
129 TACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTACAACTTCAG
95241312 GAAGATAA
1 GAAGATAA
95241320 GGCTGGTGGC
Statistics
Matches: 168, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
174 2 0.01
175 13 0.08
176 131 0.78
177 22 0.13
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (177 bp):
GAAGATAAAATCTGTAATCTTCAGTCTGCTTCCTGCAACTTCAAGAAGATAAGACTGGTGGCTAA
AATCTACTCCATAACCGATACATGGAGATAAGACTCGCCATTTCTGATCTACTCCAGAGCCGATA
CATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTACAACTTCAG
Found at i:95241236 original size:309 final size:309
Alignment explanation
Indices: 95240371--95241761 Score: 1316
Period size: 309 Copynumber: 4.5 Consensus size: 309
95240361 ATTTCTGATT
*
95240371 TGCAACTTCAGGGAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
1 TGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
** *
95240436 C-TCGCCATCTT-TGATCTGCTCCATAGCCGATACATGGAGATAAGA-CTCGCCATTTT-TGATC
66 CTTC-CCAT-TTCTGATCTGCTCCATAGCCGATACATGGAGATAAGATCT-GTAATTTTCAG-TC
* * * * * * *
95240497 TGATCCATAGCCGA-TACATGAAGATAAGATCTGTAATTTTTAGTCTGCTTCCTGCAACTTCAGG
127 TGTTCC-TA--CAACTTCAGGAAGATAAAATCTGTAATCTTCAGTCTGCTTCCTGCAACTTCAGG
* ** * * *
95240561 AAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGTAGATACATGAAGATAAGACTCACCATTTTT
189 AAGATAAGACTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCT
* * *
95240626 GATCTACTCCATAGCCGATACATGGAGATAAGATCTATAATTTTCAGTCTGTTTCC
254 GATCTACTCCATAGCCGATACATGAAGATAAGATCTGTAATTTTCAGTCTGCTTCC
* ** ** ** * * * * * * *
95240682 TACAACTTCAGGAAGATAAAACCT-GTATCTTCAGTTTGTTCCGCT-G-CAACTTCAGGGAGATA
1 TGCAACTTCAGGAAGAT-AAGGCTGGTGGCTAAAATCTGCTCC-ATAGCCGA-TACATGGAGATA
** *** * * ** *
95240744 AGACTGGTGGC---TAAAATCTACTCCATAACCGATACATGGAGATAAGA-CTCGCCA-TTTCTG
63 AGACT--TCCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAAGATCT-GTAATTTTCAG
* ** * * * * *
95240804 ATCTACTTCAGAGCCGA-TACATGG-AGATAAGATCTGTAATTTTCAGTTTGCTTCCTGCAACTT
125 -TCT-GTTCCTA--CAACTTCA-GGAAGATAAAATCTGTAATCTTCAGTCTGCTTCCTGCAACTT
*
95240867 CAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCAT
185 CAGGAAGATAAGACTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCAT
*
95240932 TTCTGATCTGCTCCATAGCCGATACATGAAGATAAGATCTGTAATTTTCAGTCTGCTTCC
250 TTCTGATCTACTCCATAGCCGATACATGAAGATAAGATCTGTAATTTTCAGTCTGCTTCC
* *
95240992 TGCAACTTCAAGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGTCGATACATGGAGATAAGA
1 TGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
*
95241057 CTTCCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAATATCTGTAATTTTCAGTCTGTT
66 CTTCCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGTT
* *
95241122 CCTACAACTTCAGGAAGATAAAATCTGT-ATCTTCAGTTTG-TTCCGCTGCAACTTCAGGGAGAT
131 CCTACAACTTCAGGAAGATAAAATCTGTAATCTTCAGTCTGCTT-C-CTGCAACTTCAGGAAGAT
* *
95241185 AAGACTGGTGGCTAAAATCTACTCCATAACCGATACATGGAGATAAGACTCGCCATTTCTGATCT
194 AAGACTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCT
* *
95241250 ACTCCAGAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCC
259 ACTCCATAGCCGATACATGAAGATAAGATCTGTAATTTTCAGTCTGCTTCC
*
95241301 TGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGAAGATAAGA
1 TGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
95241366 C-TCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGC
66 CTTC-CCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTG-
* ** ** ** * * *
95241430 TTCCTGCAACTTCAGGAAGAT-AAGGCTGGT-GGCTAAAATCTGC-TCCATAGTCGA-TACATGG
129 TTCCTACAACTTCAGGAAGATAAAATCT-GTAATCTTCAGTCTGCTTCC-T-G-CAACTTCA-GG
** *** * **
95241491 -AGATAAGACT--TCCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAATA-TCTGTAAT
189 AAGATAAGACTGGTGGC---TAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCCAT
* ** * * * * *
95241552 TT-TCAGTCTGTTCC-T-G-CAACTTCAGGAAGATAAGACCTGT-ATCTTT-AGTCTGCTCCGC
250 TTCTGA-TCTACTCCATAGCCGA-TACATGAAGATAAGATCTGTAAT-TTTCAGTCTGCTTC-C
* * *
95241610 AGCAACTTCAGGAAGATAAGACTGGTGGCTAAAATCTACTCCATAGCCGATACATGGAGATAAGA
1 TGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
* * * * * *
95241675 CTTGCCATTTCTGATATGCTCCATGGCCAATACATGGAGATAAGATATATAATTTTCAGTCTGCT
66 CTTCCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTG-T
* **
95241740 TCTTGGAACTTCAGGAAGATAA
130 TCCTACAACTTCAGGAAGATAA
95241762 GGCTGGTGGC
Statistics
Matches: 916, Mismatches: 124, Indels: 81
0.82 0.11 0.07
Matches are distributed among these distances:
307 2 0.00
308 36 0.04
309 435 0.47
310 303 0.33
311 126 0.14
312 12 0.01
313 1 0.00
314 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (309 bp):
TGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGA
CTTCCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGTT
CCTACAACTTCAGGAAGATAAAATCTGTAATCTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAA
GACTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCTAC
TCCATAGCCGATACATGAAGATAAGATCTGTAATTTTCAGTCTGCTTCC
Found at i:95241310 original size:133 final size:132
Alignment explanation
Indices: 95241137--95241587 Score: 726
Period size: 133 Copynumber: 3.4 Consensus size: 132
95241127 AACTTCAGGA
* * * *
95241137 AGATAAAATCTGT-ATCTTCAGTTTGTTCCGCTGCAACTTCAGGGAGATAAGACTGGTGGCTAAA
1 AGATAAGATCTGTAATTTTCAGTCTGTT-C-CTGCAACTTCAGGAAGATAAGACTGGTGGCTAAA
* * * *
95241201 ATCTACTCCATAACCGATACATGGAGATAAGACTCGCCATTTCTGATCTACTCCAGAGCCGATAC
64 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATAC
95241266 ATGG
129 ATGG
*
95241270 AGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAA
1 AGATAAGATCTGTAATTTTCAGTCTG-TTCCTGCAACTTCAGGAAGATAAGACTGGTGGCTAAAA
*
95241335 TCTGCTCCATAGCCGATACATGAAGATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACA
65 TCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACA
95241400 TGG
130 TGG
*
95241403 AGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAA
1 AGATAAGATCTGTAATTTTCAGTCTG-TTCCTGCAACTTCAGGAAGATAAGACTGGTGGCTAAAA
*
95241468 TCTGCTCCATAGTCGATACATGGAGATAAGACTTC-CCATTTCTGATCTGCTCCATAGCCGATAC
65 TCTGCTCCATAGCCGATACATGGAGATAAGAC-TCGCCATTTCTGATCTGCTCCATAGCCGATAC
95241532 ATGG
129 ATGG
*
95241536 AGATAATATCTGTAATTTTCAGTCTGTTCCTGCAACTTCAGGAAGATAAGAC
1 AGATAAGATCTGTAATTTTCAGTCTGTTCCTGCAACTTCAGGAAGATAAGAC
95241588 CTGTATCTTT
Statistics
Matches: 301, Mismatches: 14, Indels: 7
0.93 0.04 0.02
Matches are distributed among these distances:
132 25 0.08
133 261 0.87
134 13 0.04
135 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (132 bp):
AGATAAGATCTGTAATTTTCAGTCTGTTCCTGCAACTTCAGGAAGATAAGACTGGTGGCTAAAAT
CTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACAT
GG
Found at i:95241324 original size:442 final size:443
Alignment explanation
Indices: 95240156--95242041 Score: 2797
Period size: 442 Copynumber: 4.3 Consensus size: 443
95240146 ATACATGGAG
* *
95240156 ATAGCCGATACATGGAGATAAGACTCGCCATTTCTGATCTGCTCCATAGTCGATACATGGAGATA
1 ATAGTCGATACATGGAGATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATA
** *
95240221 AGATCTGTAATTTTCAGTCTGTTTTTTGCAACTTTA-GAAGATAAGACCTGTATCTTCAGTCTGC
66 AGATCTGTAATTTTCAGTCTGTTTCCTGCAACTTCAGGAAGATAAGACCTGTATCTTCAGTCTGC
* * * * *
95240285 TCCGCTGCAACTTCAGGGAGATAAGATTGGTGGTTAAAATATGCTCCATAGCCGATACATGGAGA
131 TCCGCTGCAACTTCAGGGAGATAAGACTGGTGGCTAAAATCTACTCCATAACCGATACATGGAGA
* * * * * *** ** *
95240350 TAAGACTCGCTATTTCTGAT-T--TGCA-A--C--TTCAGGGAGATAAG-GCTGGT-GGCTAAAA
196 TAAGACTCGCCATTTCTGATCTACTCCAGAGCCGATACATGGAGATAAGATCT-GTAATTTTCAG
* * * **** ***
95240405 TCTGC-TCCATAGCCGA-TACATGG-AGATAAGACTCGCCATCTTTGATCTGCTCCATAGCCGAT
260 TCTGCTTCC-T-G-CAACTTCA-GGAAGATAAGGCT-GGTGGCTAAAATCTGCTCCATAGCCGAT
* *
95240467 ACATGGAGATAAGACTCGCCATTTTTGATCTGATCCATAGCCGATACATGAAGATAAGATCTGTA
320 ACATGGAGATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGAAGATAAGATCTGTA
*
95240532 ATTTTTAGTCTGCTTCCTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCC
385 ATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCC
* * * * *
95240591 ATAGTAGATACATGAAGATAAGACTCACCATTTTTGATCTACTCCATAGCCGATACATGGAGATA
1 ATAGTCGATACATGGAGATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATA
* * * * *
95240656 AGATCTATAATTTTCAGTCTGTTTCCTACAACTTCAGGAAGATAAAACCTGTATCTTCAGTTTGT
66 AGATCTGTAATTTTCAGTCTGTTTCCTGCAACTTCAGGAAGATAAGACCTGTATCTTCAGTCTGC
95240721 TCCGCTGCAACTTCAGGGAGATAAGACTGGTGGCTAAAATCTACTCCATAACCGATACATGGAGA
131 TCCGCTGCAACTTCAGGGAGATAAGACTGGTGGCTAAAATCTACTCCATAACCGATACATGGAGA
*
95240786 TAAGACTCGCCATTTCTGATCTACTTCAGAGCCGATACATGGAGATAAGATCTGTAATTTTCAGT
196 TAAGACTCGCCATTTCTGATCTACTCCAGAGCCGATACATGGAGATAAGATCTGTAATTTTCAGT
*
95240851 TTGCTTCCTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGG
261 CTGCTTCCTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGG
95240916 AGATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGAAGATAAGATCTGTAATTTTC
326 AGATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGAAGATAAGATCTGTAATTTTC
*
95240981 AGTCTGCTTCCTGCAACTTCAAGAAGATAAGGCTGGTGGCTAAAATCTGCTCC
391 AGTCTGCTTCCTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCC
95241034 ATAGTCGATACATGGAGATAAGACTTC-CCATTTCTGATCTGCTCCATAGCCGATACATGGAGAT
1 ATAGTCGATACATGGAGATAAGAC-TCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAGAT
* * * * *
95241098 AATATCTGTAATTTTCAGTCTG-TTCCTACAACTTCAGGAAGATAAAATCTGTATCTTCAGTTTG
65 AAGATCTGTAATTTTCAGTCTGTTTCCTGCAACTTCAGGAAGATAAGACCTGTATCTTCAGTCTG
*
95241162 TTCCGCTGCAACTTCAGGGAGATAAGACTGGTGGCTAAAATCTACTCCATAACCGATACATGGAG
130 CTCCGCTGCAACTTCAGGGAGATAAGACTGGTGGCTAAAATCTACTCCATAACCGATACATGGAG
95241227 ATAAGACTCGCCATTTCTGATCTACTCCAGAGCCGATACATGGAGATAAGATCTGTAATTTTCAG
195 ATAAGACTCGCCATTTCTGATCTACTCCAGAGCCGATACATGGAGATAAGATCTGTAATTTTCAG
95241292 TCTGCTTCCTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATG
260 TCTGCTTCCTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATG
* *
95241357 AAGATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTT
325 GAGATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGAAGATAAGATCTGTAATTTT
95241422 CAGTCTGCTTCCTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCC
390 CAGTCTGCTTCCTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCC
95241476 ATAGTCGATACATGGAGATAAGACTTC-CCATTTCTGATCTGCTCCATAGCCGATACATGGAGAT
1 ATAGTCGATACATGGAGATAAGAC-TCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAGAT
* *
95241540 AATATCTGTAATTTTCAGTCTG-TTCCTGCAACTTCAGGAAGATAAGACCTGTATCTTTAGTCTG
65 AAGATCTGTAATTTTCAGTCTGTTTCCTGCAACTTCAGGAAGATAAGACCTGTATCTTCAGTCTG
* * *
95241604 CTCCGCAGCAACTTCAGGAAGATAAGACTGGTGGCTAAAATCTACTCCATAGCCGATACATGGAG
130 CTCCGCTGCAACTTCAGGGAGATAAGACTGGTGGCTAAAATCTACTCCATAACCGATACATGGAG
* * * * * *
95241669 ATAAGACTTGCCATTTCTGATATGCTCCATG-GCCAATACATGGAGATAAGATATATAATTTTCA
195 ATAAGACTCGCCATTTCTGATCTACTCCA-GAGCCGATACATGGAGATAAGATCTGTAATTTTCA
* * *
95241733 GTCTGCTTCTTGGAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCAATACAT
259 GTCTGCTTCCTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACAT
*
95241798 GGAGATAAGACTCGCCATTTCTGATCTGCTCCATAGTCGATACATGGAA-ATAAGATCTGTAATT
324 GGAGATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACAT-GAAGATAAGATCTGTAATT
* * * * * *
95241862 TTTAGTGTGCTTCTTACAACTTTAGGAAGATAAGACTGGTGGCTAAAATCTGCTCC
388 TTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCC
* * *
95241918 ATAG-CTGATACATGAAGATAAGACTCGCCATTTTTGATCTGCTCCATAGCCAATACATGGAGAT
1 ATAGTC-GATACATGGAGATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAGAT
* *
95241982 AAGATCTGTAATTTTCAGTCTGCTTCCTGCCACTTCAGGAAGATAAGACCTGTATCTTCA
65 AAGATCTGTAATTTTCAGTCTGTTTCCTGCAACTTCAGGAAGATAAGACCTGTATCTTCA
95242042 ATGATACACT
Statistics
Matches: 1340, Mismatches: 91, Indels: 32
0.92 0.06 0.02
Matches are distributed among these distances:
435 89 0.07
436 104 0.08
437 1 0.00
439 3 0.00
440 1 0.00
441 3 0.00
442 838 0.63
443 260 0.19
444 29 0.02
445 9 0.01
446 3 0.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.29
Consensus pattern (443 bp):
ATAGTCGATACATGGAGATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATA
AGATCTGTAATTTTCAGTCTGTTTCCTGCAACTTCAGGAAGATAAGACCTGTATCTTCAGTCTGC
TCCGCTGCAACTTCAGGGAGATAAGACTGGTGGCTAAAATCTACTCCATAACCGATACATGGAGA
TAAGACTCGCCATTTCTGATCTACTCCAGAGCCGATACATGGAGATAAGATCTGTAATTTTCAGT
CTGCTTCCTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGG
AGATAAGACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGAAGATAAGATCTGTAATTTTC
AGTCTGCTTCCTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCC
Found at i:95241353 original size:575 final size:573
Alignment explanation
Indices: 95240725--95242028 Score: 1822
Period size: 575 Copynumber: 2.3 Consensus size: 573
95240715 GTTTGTTCCG
* * * *
95240725 CTGCAACTTCAGGGAGATAAGACTGGTGGCTAAAATCTACTCCATAACCGATACATGGAGATAAG
1 CTGCAACTTCAGGAAGATAAGACTGGTGGCTAAAATCTGCTCCATAGCCGATACATGAAGATAAG
* * * *
95240790 ACTCGCCATTTCTGATCTACTTCAGAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTTTGC
66 ACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGC
95240855 TTCCTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGAT
131 TTCCTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGAT
95240920 AAGAC-TCGCCATTTCTGATCTGCTCCATAGCCGATACATGAAGATAAGATCTGTAATTTTCAGT
196 AAGACTTC-CCATTTCTGATCTGCTCCATAGCCGATACATGAAGATAAGATCTGTAATTTTCAGT
* * * *
95240984 CTGCTTCCTGCAACTTCAAGAAGATAAG-GCTGGTGGCTAAAATCTGCTCCATAGTCGA-TACAT
260 CTG-TTCCTGCAACTTCAAGAAGATAAGACCT-GTAGCTAAAATCTGCTCCACAG-CAACTACA-
*** * * *
95241047 GG-AGATAAGACT-TCCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAATA-TCTGTAA
321 GGAAGATAAGACTGTCCC---TAAAATCTACTCCATAGCCGATACATGGAGATAAGACT-TGCAA
* * * * * *
95241109 TTTTCAG-TCTGTTCC-T-ACAACTTCA-GGAAGATAAAATCTGT-ATCTTCAGTTTG-TTCCGC
382 -TTTCAGATATGCTCCATGACAA-TACATGG-AGATAAAATATATAATCTTCAGTCTGCTT-C-C
* *
95241168 TGCAACTTCAGGGAGATAAGACTGGTGGCTAAAATCTACTCCATAACCGATACATGGAGATAAGA
442 TGCAACTTCAGGAAGATAAGACTGGTGGCTAAAATCTACTCCATAACCAATACATGGAGATAAGA
*
95241233 CTCGCCATTTCTGATCTACTCCAGAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCT
507 CTCGCCATTTCTGATCTACTCCAGAGCCGATACATGGAAATAAGATCTGTAATTTTCAGTCTGCT
95241298 TC
572 TC
*
95241300 CTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGAAGATAAG
1 CTGCAACTTCAGGAAGATAAGACTGGTGGCTAAAATCTGCTCCATAGCCGATACATGAAGATAAG
95241365 ACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGC
66 ACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGC
*
95241430 TTCCTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGTCGATACATGGAGAT
131 TTCCTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGAT
* *
95241495 AAGACTTCCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAATATCTGTAATTTTCAGTC
196 AAGACTTCCCATTTCTGATCTGCTCCATAGCCGATACATGAAGATAAGATCTGTAATTTTCAGTC
* * ** * * *
95241560 TGTTCCTGCAACTTCAGGAAGATAAGACCTGTATCTTTAGTCTGCTCCGCAGCAACTTCAGGAAG
261 TGTTCCTGCAACTTCAAGAAGATAAGACCTGTAGCTAAAATCTGCTCCACAGCAACTACAGGAAG
** * *
95241625 ATAAGACTGGTGGCTAAAATCTACTCCATAGCCGATACATGGAGATAAGACTTGCCATTTCTGAT
326 ATAAGACT-GTCCCTAAAATCTACTCCATAGCCGATACATGGAGATAAGACTTGCAATTTCAGAT
* * * * *
95241690 ATGCTCCATGGCCAATACATGGAGATAAGATATATAATTTTCAGTCTGCTTCTTGGAACTTCAGG
390 ATGCTCCAT-GACAATACATGGAGATAAAATATATAATCTTCAGTCTGCTTCCTGCAACTTCAGG
* * *
95241755 AAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCAATACATGGAGATAAGACTCGCCATTTCT
454 AAGATAAGACTGGTGGCTAAAATCTACTCCATAACCAATACATGGAGATAAGACTCGCCATTTCT
* * * * *
95241820 GATCTGCTCCATAGTCGATACATGGAAATAAGATCTGTAATTTTTAGTGTGCTTC
519 GATCTACTCCAGAGCCGATACATGGAAATAAGATCTGTAATTTTCAGTCTGCTTC
* * * *
95241875 TTACAACTTTAGGAAGATAAGACTGGTGGCTAAAATCTGCTCCATAGCTGATACATGAAGATAAG
1 CTGCAACTTCAGGAAGATAAGACTGGTGGCTAAAATCTGCTCCATAGCCGATACATGAAGATAAG
* *
95241940 ACTCGCCATTTTTGATCTGCTCCATAGCCAATACATGGAGATAAGATCTGTAATTTTCAGTCTGC
66 ACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGC
*
95242005 TTCCTGCCACTTCAGGAAGATAAG
131 TTCCTGCAACTTCAGGAAGATAAG
95242029 ACCTGTATCT
Statistics
Matches: 652, Mismatches: 63, Indels: 28
0.88 0.08 0.04
Matches are distributed among these distances:
572 5 0.01
573 44 0.07
574 53 0.08
575 528 0.81
576 20 0.03
577 2 0.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (573 bp):
CTGCAACTTCAGGAAGATAAGACTGGTGGCTAAAATCTGCTCCATAGCCGATACATGAAGATAAG
ACTCGCCATTTCTGATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGC
TTCCTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGAT
AAGACTTCCCATTTCTGATCTGCTCCATAGCCGATACATGAAGATAAGATCTGTAATTTTCAGTC
TGTTCCTGCAACTTCAAGAAGATAAGACCTGTAGCTAAAATCTGCTCCACAGCAACTACAGGAAG
ATAAGACTGTCCCTAAAATCTACTCCATAGCCGATACATGGAGATAAGACTTGCAATTTCAGATA
TGCTCCATGACAATACATGGAGATAAAATATATAATCTTCAGTCTGCTTCCTGCAACTTCAGGAA
GATAAGACTGGTGGCTAAAATCTACTCCATAACCAATACATGGAGATAAGACTCGCCATTTCTGA
TCTACTCCAGAGCCGATACATGGAAATAAGATCTGTAATTTTCAGTCTGCTTC
Found at i:95241387 original size:45 final size:45
Alignment explanation
Indices: 95241334--95241541 Score: 166
Period size: 45 Copynumber: 4.7 Consensus size: 45
95241324 GGTGGCTAAA
*
95241334 ATCTGCTCCATAGCCGATACATGAAGATAAGACTCGCCATTTCTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTG
** *
95241379 ATCTGCTCCATAGCCGATACATGGAGATAAGA-TCTGTAATTT-TC
1 ATCTGCTCCATAGCCGATACATGGAGATAAGACTC-GCCATTTCTG
* * * * ** *
95241423 AGTCTGCTTCC-T-G-CAACTTCA-GGAAGATAAGGCT-G--GTGGCTAAA
1 A-TCTGC-TCCATAGCCGA-TACATGG-AGATAAGACTCGCCATTTCT--G
*
95241467 ATCTGCTCCATAGTCGATACATGGAGATAAGACTTC-CCATTTCTG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGAC-TCGCCATTTCTG
95241512 ATCTGCTCCATAGCCGATACATGGAGATAA
1 ATCTGCTCCATAGCCGATACATGGAGATAA
95241542 TATCTGTAAT
Statistics
Matches: 127, Mismatches: 19, Indels: 34
0.71 0.11 0.19
Matches are distributed among these distances:
41 1 0.01
42 4 0.03
43 11 0.09
44 28 0.22
45 77 0.61
46 3 0.02
47 3 0.02
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (45 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGACTCGCCATTTCTG
Found at i:95241625 original size:176 final size:177
Alignment explanation
Indices: 95241403--95241762 Score: 546
Period size: 176 Copynumber: 2.0 Consensus size: 177
95241393 CGATACATGG
* * * *
95241403 AGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGGCTGGTGGCTAAAA
1 AGATAAGACCTGTAATTTTCAGTCTGCTCCCAGCAACTTCAGGAAGATAAGACTGGTGGCTAAAA
* * * *
95241468 TCTGCTCCATAGTCGATACATGGAGATAAGACTTCCCATTTCTGATCTGCTCCATAGCCGATACA
66 TCTACTCCATAGCCGATACATGGAGATAAGACTTCCCATTTCTGATATGCTCCATAGCCAATACA
* * *
95241533 TGGAGATAATATCTGTAATTTTCAGTCTG-TTCCTGCAACTTCAGGA
131 TGGAGATAAGATATATAATTTTCAGTCTGCTTCCTGCAACTTCAGGA
95241579 AGATAAGACCTGT-ATCTTT-AGTCTGCTCCGCAGCAACTTCAGGAAGATAAGACTGGTGGCTAA
1 AGATAAGACCTGTAAT-TTTCAGTCTGCTCC-CAGCAACTTCAGGAAGATAAGACTGGTGGCTAA
* *
95241642 AATCTACTCCATAGCCGATACATGGAGATAAGACTTGCCATTTCTGATATGCTCCATGGCCAATA
64 AATCTACTCCATAGCCGATACATGGAGATAAGACTTCCCATTTCTGATATGCTCCATAGCCAATA
* *
95241707 CATGGAGATAAGATATATAATTTTCAGTCTGCTTCTTGGAACTTCAGGA
129 CATGGAGATAAGATATATAATTTTCAGTCTGCTTCCTGCAACTTCAGGA
95241756 AGATAAG
1 AGATAAG
95241763 GCTGGTGGCT
Statistics
Matches: 166, Mismatches: 15, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
175 11 0.07
176 133 0.80
177 22 0.13
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (177 bp):
AGATAAGACCTGTAATTTTCAGTCTGCTCCCAGCAACTTCAGGAAGATAAGACTGGTGGCTAAAA
TCTACTCCATAGCCGATACATGGAGATAAGACTTCCCATTTCTGATATGCTCCATAGCCAATACA
TGGAGATAAGATATATAATTTTCAGTCTGCTTCCTGCAACTTCAGGA
Found at i:95241762 original size:133 final size:133
Alignment explanation
Indices: 95241611--95242030 Score: 651
Period size: 133 Copynumber: 3.2 Consensus size: 133
95241601 CTGCTCCGCA
*
95241611 GCAACTTCAGGAAGATAAGACTGGTGGCTAAAATCTACTCCATAGCCGATACATGGAGATAAGAC
1 GCAACTTCAGGAAGATAAGACTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGAC
* * * * *
95241676 TTGCCATTTCTGATATGCTCCATGGCCAATACATGGAGATAAGATATATAATTTTCAGTCTGCTT
66 TCGCCATTTCTGATCTGCTCCATAGCCAATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTT
95241741 CTT
131 CTT
* * *
95241744 GGAACTTCAGGAAGATAAGGCTGGTGGCTAAAATCTGCTCCATAGCCAATACATGGAGATAAGAC
1 GCAACTTCAGGAAGATAAGACTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGAC
* * * * *
95241809 TCGCCATTTCTGATCTGCTCCATAGTCGATACATGGAAATAAGATCTGTAATTTTTAGTGTGCTT
66 TCGCCATTTCTGATCTGCTCCATAGCCAATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTT
95241874 CTT
131 CTT
* * * *
95241877 ACAACTTTAGGAAGATAAGACTGGTGGCTAAAATCTGCTCCATAGCTGATACATGAAGATAAGAC
1 GCAACTTCAGGAAGATAAGACTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGAC
*
95241942 TCGCCATTTTTGATCTGCTCCATAGCCAATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTT
66 TCGCCATTTCTGATCTGCTCCATAGCCAATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTT
*
95242007 CCT
131 CTT
*
95242010 GCCACTTCAGGAAGATAAGAC
1 GCAACTTCAGGAAGATAAGAC
95242031 CTGTATCTTC
Statistics
Matches: 256, Mismatches: 31, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
133 256 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (133 bp):
GCAACTTCAGGAAGATAAGACTGGTGGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGAC
TCGCCATTTCTGATCTGCTCCATAGCCAATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTT
CTT
Found at i:95241827 original size:45 final size:45
Alignment explanation
Indices: 95241776--95241985 Score: 139
Period size: 45 Copynumber: 4.7 Consensus size: 45
95241766 GGTGGCTAAA
95241776 ATCTGCTCCATAGCCAATACATGGAGATAAGACTCGCCATTTCTG
1 ATCTGCTCCATAGCCAATACATGGAGATAAGACTCGCCATTTCTG
* * * ** *
95241821 ATCTGCTCCATAGTCGATACATGGAAATAAGA-TCTGTAATTT-TT
1 ATCTGCTCCATAGCCAATACATGGAGATAAGACTC-GCCATTTCTG
* * * ** * ** *
95241865 AGTGTGCTTCTTA--CAACTTTA-GGAAGATAAGACT-G--GTGGCTAAA
1 A-TCTGCTCCATAGCCAA-TACATGG-AGATAAGACTCGCCATTTCT--G
** * *
95241909 ATCTGCTCCATAGCTGATACATGAAGATAAGACTCGCCATTTTTG
1 ATCTGCTCCATAGCCAATACATGGAGATAAGACTCGCCATTTCTG
95241954 ATCTGCTCCATAGCCAATACATGGAGATAAGA
1 ATCTGCTCCATAGCCAATACATGGAGATAAGA
95241986 TCTGTAATTT
Statistics
Matches: 118, Mismatches: 33, Indels: 28
0.66 0.18 0.16
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 13 0.11
44 26 0.22
45 75 0.64
47 2 0.02
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (45 bp):
ATCTGCTCCATAGCCAATACATGGAGATAAGACTCGCCATTTCTG
Found at i:95241829 original size:309 final size:308
Alignment explanation
Indices: 95240892--95241897 Score: 1144
Period size: 309 Copynumber: 3.2 Consensus size: 308
95240882 GGTGGCTAAA
** * * *
95240892 ATCTGCTCCATAGCCGATACATGGAGATAAGA-CTCGCCA-TTTCTGATCTGCTCCATAGCCGA-
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCT-GTAATTTTCAG-TCTGTTCC-T-G-CAAC
* * * *
95240954 TACATGAAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAAGAAGATAAGGCTGGTG
61 TTCAGGAAGATAAGACCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGGCTGGTG
* *
95241019 GCTAAAATCTGCTCCATAGTCGATACATGGAGATAAGACTTCCCATTTCTGATCTGCTCCATAGC
126 GCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTTGCCATTTCTGATCTGCTCCATAGC
* * **
95241084 CGATACATGGAGATAATATCTGTAATTTTCAGTCTG-TTCCTACAACTTCAGGAAGATAAAATCT
191 CGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGAT-AAGGCT
** ** * * * * * * * ** *
95241148 -GTATCTTCAGTTTGTTCCGCT-GCAACTTCAGGGAGATAAGACT-G--GTGGCTAAA
255 GGTGGCTAAAATCTGCTCC-ATAGCAA-TACATGGAGATAAGACTCGCCATTTCT--G
* * ** * ** * *
95241201 ATCTACTCCATAACCGATACATGGAGATAAGA-CTCGCCA-TTTCTGATCTACTCCAG-AGCCGA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCT-GTAATTTTCAG-TCTGTTCCTGCA-AC--
* *
95241263 TACATGG-AGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGGCTGGT
61 TTCA-GGAAGATAAGACCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGGCTGGT
* *
95241327 GGCTAAAATCTGCTCCATAGCCGATACATGAAGATAAGACTCGCCATTTCTGATCTGCTCCATAG
125 GGCTAAAATCTGCTCCATAGCCGATACATGGAGATAAGACTTGCCATTTCTGATCTGCTCCATAG
95241392 CCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGGCT
190 CCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGGCT
*
95241457 GGTGGCTAAAATCTGCTCCATAGTCGATACATGGAGATAAGACTTC-CCATTTCTG
255 GGTGGCTAAAATCTGCTCCATAG-CAATACATGGAGATAAGAC-TCGCCATTTCTG
*
95241512 ATCTGCTCCATAGCCGATACATGGAGATAATATCTGTAATTTTCAGTCTGTTCCTGCAACTTCAG
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGTTCCTGCAACTTCAG
* * *
95241577 GAAGATAAGACCTGT-ATCTTT-AGTCTGCTCCGCAGCAACTTCAGGAAGATAAGACTGGTGGCT
66 GAAGATAAGACCTGTAAT-TTTCAGTCTGCTTC-CTGCAACTTCAGGAAGATAAGGCTGGTGGCT
* * * *
95241640 AAAATCTACTCCATAGCCGATACATGGAGATAAGACTTGCCATTTCTGATATGCTCCATGGCCAA
129 AAAATCTGCTCCATAGCCGATACATGGAGATAAGACTTGCCATTTCTGATCTGCTCCATAGCCGA
* * * *
95241705 TACATGGAGATAAGATATATAATTTTCAGTCTGCTTCTTGGAACTTCAGGAAGATAAGGCTGGTG
194 TACATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGGCTGGTG
95241770 GCTAAAATCTGCTCCATAGCCAATACATGGAGATAAGACTCGCCATTTCTG
259 GCTAAAATCTGCTCCATAG-CAATACATGGAGATAAGACTCGCCATTTCTG
* * * * * * *
95241821 ATCTGCTCCATAGTCGATACATGGAAATAAGATCTGTAATTTTTAGTGTGCTTCTTACAACTTTA
1 ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTG-TTCCTGCAACTTCA
95241886 GGAAGATAAGAC
65 GGAAGATAAGAC
95241898 TGGTGGCTAA
Statistics
Matches: 610, Mismatches: 66, Indels: 41
0.85 0.09 0.06
Matches are distributed among these distances:
307 1 0.00
308 15 0.02
309 471 0.77
310 70 0.11
311 42 0.07
312 8 0.01
313 3 0.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.29
Consensus pattern (308 bp):
ATCTGCTCCATAGCCGATACATGGAGATAAGATCTGTAATTTTCAGTCTGTTCCTGCAACTTCAG
GAAGATAAGACCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGGCTGGTGGCTAA
AATCTGCTCCATAGCCGATACATGGAGATAAGACTTGCCATTTCTGATCTGCTCCATAGCCGATA
CATGGAGATAAGATCTGTAATTTTCAGTCTGCTTCCTGCAACTTCAGGAAGATAAGGCTGGTGGC
TAAAATCTGCTCCATAGCAATACATGGAGATAAGACTCGCCATTTCTG
Found at i:95258354 original size:19 final size:19
Alignment explanation
Indices: 95258330--95258368 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
95258320 AAACCTAGAC
95258330 AATTATGACACGTAACAAA
1 AATTATGACACGTAACAAA
95258349 AATTATGACACGTAACAAA
1 AATTATGACACGTAACAAA
95258368 A
1 A
95258369 TAACTAAGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.54, C:0.15, G:0.10, T:0.21
Consensus pattern (19 bp):
AATTATGACACGTAACAAA
Found at i:95261171 original size:19 final size:19
Alignment explanation
Indices: 95261147--95261192 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
95261137 TGTGAAGTTT
* *
95261147 AATGCACATG-ATGCAATG
1 AATGCAAATGCATGAAATG
95261165 CAATGCAAATGCATGAAATG
1 -AATGCAAATGCATGAAATG
95261185 AATGCAAA
1 AATGCAAA
95261193 AGAAAGTAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.20
Consensus pattern (19 bp):
AATGCAAATGCATGAAATG
Found at i:95263247 original size:23 final size:23
Alignment explanation
Indices: 95263201--95263245 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
95263191 AAAACTTGAA
*
95263201 AATTAATTATAAAATAAAAAAAT
1 AATTAATCATAAAATAAAAAAAT
*
95263224 AATTAATGCATAAAATACAAAA
1 AATTAAT-CATAAAATAAAAAA
95263246 TATTGATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.67, C:0.04, G:0.02, T:0.27
Consensus pattern (23 bp):
AATTAATCATAAAATAAAAAAAT
Found at i:95263676 original size:23 final size:22
Alignment explanation
Indices: 95263635--95263678 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
95263625 ATAGCTTAAT
*
95263635 ATAAATAATATATATAAAAATA
1 ATAAATAATATATAAAAAAATA
*
95263657 ATAATATAATATTTAAAAAAAT
1 ATAA-ATAATATATAAAAAAAT
95263679 GTTCATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (22 bp):
ATAAATAATATATAAAAAAATA
Found at i:95264223 original size:13 final size:13
Alignment explanation
Indices: 95264205--95264230 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
95264195 GGTAATGAGG
95264205 TTAGTGGGGTGAT
1 TTAGTGGGGTGAT
95264218 TTAGTGGGGTGAT
1 TTAGTGGGGTGAT
95264231 GGAGTTAGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.46, T:0.38
Consensus pattern (13 bp):
TTAGTGGGGTGAT
Found at i:95264240 original size:17 final size:17
Alignment explanation
Indices: 95264190--95264282 Score: 70
Period size: 17 Copynumber: 5.3 Consensus size: 17
95264180 TTCCTAGGCA
*
95264190 AGTGGGGTAAT-GAGGTT
1 AGTGGGGTGATGGA-GTT
95264207 AGTGGGGTGAT----TT
1 AGTGGGGTGATGGAGTT
95264220 AGTGGGGTGATGGAGTT
1 AGTGGGGTGATGGAGTT
95264237 AGTGGCAAATAAGGTGATGGAGTT
1 AGTGG-------GGTGATGGAGTT
95264261 AGTGGGGTGATGGAGTT
1 AGTGGGGTGATGGAGTT
95264278 AGTGG
1 AGTGG
95264283 TCAGTTTAGT
Statistics
Matches: 64, Mismatches: 1, Indels: 22
0.74 0.01 0.25
Matches are distributed among these distances:
13 13 0.20
17 34 0.53
24 17 0.27
ACGTcount: A:0.23, C:0.01, G:0.47, T:0.29
Consensus pattern (17 bp):
AGTGGGGTGATGGAGTT
Found at i:95268808 original size:34 final size:34
Alignment explanation
Indices: 95268770--95268838 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
95268760 CACTGGAAAG
95268770 TTAGCACTGAGCTCAATATTTCAGTATGGAACAA
1 TTAGCACTGAGCTCAATATTTCAGTATGGAACAA
95268804 TTAGCACTGAGCTCAATATTTCAGTATGGAACAA
1 TTAGCACTGAGCTCAATATTTCAGTATGGAACAA
95268838 T
1 T
95268839 GGTGGCTGCC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30
Consensus pattern (34 bp):
TTAGCACTGAGCTCAATATTTCAGTATGGAACAA
Found at i:95270530 original size:80 final size:80
Alignment explanation
Indices: 95270388--95270537 Score: 207
Period size: 80 Copynumber: 1.9 Consensus size: 80
95270378 AATAATTACT
* * *
95270388 TTCGTTAAAAAGTATTTAGCAATTTCATATTAGTAGGCGAAAATATAAATGTATAAAGTTGTACT
1 TTCGTTAAAAAATATTTAGCAATTTCATATAAGTAGGCGAAAATATAAATGTATAAAGTTGTACC
95270453 CATATCCCCAACCAC
66 CATATCCCCAACCAC
* *
95270468 TTCGTTAAAAAATATTTA-CAAATTTCATATAAGTATGTC-AAAATATAAATGTA-AATATTTGT
1 TTCGTTAAAAAATATTTAGC-AATTTCATATAAGTA-GGCGAAAATATAAATGTATAA-AGTTGT
95270530 ACCCATAT
63 ACCCATAT
95270538 TCGTGTGTTT
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
79 3 0.05
80 57 0.92
81 2 0.03
ACGTcount: A:0.41, C:0.13, G:0.10, T:0.35
Consensus pattern (80 bp):
TTCGTTAAAAAATATTTAGCAATTTCATATAAGTAGGCGAAAATATAAATGTATAAAGTTGTACC
CATATCCCCAACCAC
Found at i:95274126 original size:23 final size:23
Alignment explanation
Indices: 95274096--95274142 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
95274086 TTAAATATGC
95274096 TGAATCTTCCTTGTCAAAGTTGT
1 TGAATCTTCCTTGTCAAAGTTGT
* *
95274119 TGAATCTTCGTTGTCAAATTTGT
1 TGAATCTTCCTTGTCAAAGTTGT
95274142 T
1 T
95274143 CATTTAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.21, C:0.15, G:0.17, T:0.47
Consensus pattern (23 bp):
TGAATCTTCCTTGTCAAAGTTGT
Found at i:95277551 original size:6 final size:6
Alignment explanation
Indices: 95277537--95277601 Score: 76
Period size: 6 Copynumber: 10.8 Consensus size: 6
95277527 AAGATTGCAA
* * * * *
95277537 ATTTTC ATTTCC ATTTCC ATTTCC ATTTTC ATTTTC ATTTTC ATTTTC
1 ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC
*
95277585 ATTTCC ATTCCC ATTTC
1 ATTTCC ATTTCC ATTTC
95277602 TAGAAACCTA
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 54 1.00
ACGTcount: A:0.17, C:0.26, G:0.00, T:0.57
Consensus pattern (6 bp):
ATTTCC
Found at i:95279419 original size:30 final size:30
Alignment explanation
Indices: 95279384--95279440 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
95279374 CATGGCCATA
*
95279384 ACACACGGGCGTGTGG-TCTACCCGTGTGTC
1 ACACACGGGCATGTGGATC-ACCCGTGTGTC
95279414 ACACACGGGCATGTGGATCACCCGTGT
1 ACACACGGGCATGTGGATCACCCGTGT
95279441 AGAAGTGCCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 23 0.92
31 2 0.08
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.21
Consensus pattern (30 bp):
ACACACGGGCATGTGGATCACCCGTGTGTC
Found at i:95284735 original size:12 final size:12
Alignment explanation
Indices: 95284718--95284744 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
95284708 ATGGTGTTTT
95284718 TGCTGATGAGAA
1 TGCTGATGAGAA
95284730 TGCTGATGAGAA
1 TGCTGATGAGAA
95284742 TGC
1 TGC
95284745 AGAAAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.11, G:0.33, T:0.26
Consensus pattern (12 bp):
TGCTGATGAGAA
Found at i:95286154 original size:30 final size:30
Alignment explanation
Indices: 95286118--95286177 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
95286108 TTCCTGAGCC
*
95286118 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
95286148 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
95286178 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:95293703 original size:30 final size:30
Alignment explanation
Indices: 95293667--95293726 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
95293657 TTCCCGAGCC
*
95293667 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
95293697 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
95293727 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:95294323 original size:26 final size:26
Alignment explanation
Indices: 95294287--95294338 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
95294277 ATGGGCGGTT
*
95294287 ACATGGTAGCTTGGCTACGTAAGTTC
1 ACATGGTAGCTTGGCTACATAAGTTC
95294313 ACATGGTAGCTTGGCTACATAAGTTC
1 ACATGGTAGCTTGGCTACATAAGTTC
95294339 GCAGGCTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (26 bp):
ACATGGTAGCTTGGCTACATAAGTTC
Found at i:95296095 original size:128 final size:129
Alignment explanation
Indices: 95295939--95296320 Score: 595
Period size: 128 Copynumber: 3.0 Consensus size: 129
95295929 GAAGACATGG
* * *
95295939 GTGAAATTCTAAAGGAATATTCGGTTATTTTGAACAAACGAGAGATTGCAACCCGGCACAATAGG
1 GTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACAATAGG
* * *
95296004 GTACGATTCCCCGAATTCCCAAACATCGAACATTGCCTTCGTTTTAAATAATTTTTAAAAC-GA
66 GCACGATTCCCCGAATTCCCAAACACCGAACATTGCCTTCGTTTTAAAGAATTTTTAAAACAGA
* *
95296067 GTGAAATTCTAAAGAAATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACTATAGG
1 GTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACAATAGG
* *
95296132 GCACGATTCCCCAAATTCCCAAACACCGAACATTGCCTTCATTTTAAAGAATTTTTAAAACATGA
66 GCACGATTCCCCGAATTCCCAAACACCGAACATTGCCTTCGTTTTAAAGAATTTTTAAAACA-GA
* * * **
95296197 GTGAAATTCTAAAGGAATATTCAATTATTTTGAACAAACGGGAAATTGCAACCCAGCACGATAAA
1 GTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACAATAGG
* *
95296262 GCACGATTCCCCGAATTCCCAAACACCGAATATTGCCTTCGTTTTACAGAATTTTTAAA
66 GCACGATTCCCCGAATTCCCAAACACCGAACATTGCCTTCGTTTTAAAGAATTTTTAAA
95296321 TGAATTGTAA
Statistics
Matches: 232, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
128 116 0.50
130 116 0.50
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.27
Consensus pattern (129 bp):
GTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCACAATAGG
GCACGATTCCCCGAATTCCCAAACACCGAACATTGCCTTCGTTTTAAAGAATTTTTAAAACAGA
Found at i:95296266 original size:130 final size:130
Alignment explanation
Indices: 95295933--95296320 Score: 600
Period size: 130 Copynumber: 3.0 Consensus size: 130
95295923 GATTTAGAAG
* * * *
95295933 ACATGGGTGAAATTCTAAAGGAATATTCGGTTATTTTGAACAAACGAGAGATTGCAACCCGGCAC
1 ACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCAC
* * *
95295998 AATAGGGTACGATTCCCCGAATTCCCAAACATCGAACATTGCCTTCGTTTTAAATAATTTTTAAA
66 AATAGGGCACGATTCCCCGAATTCCCAAACACCGAACATTGCCTTCGTTTTAAAGAATTTTTAAA
*
95296063 AC--GAGTGAAATTCTAAAGAAATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCAC
1 ACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCAC
* * *
95296126 TATAGGGCACGATTCCCCAAATTCCCAAACACCGAACATTGCCTTCATTTTAAAGAATTTTTAAA
66 AATAGGGCACGATTCCCCGAATTCCCAAACACCGAACATTGCCTTCGTTTTAAAGAATTTTTAAA
* *
95296191 ACATGAGTGAAATTCTAAAGGAATATTCAATTATTTTGAACAAACGGGAAATTGCAACCCAGCAC
1 ACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCAC
* ** * *
95296256 GATAAAGCACGATTCCCCGAATTCCCAAACACCGAATATTGCCTTCGTTTTACAGAATTTTTAAA
66 AATAGGGCACGATTCCCCGAATTCCCAAACACCGAACATTGCCTTCGTTTTAAAGAATTTTTAAA
95296321 TGAATTGTAA
Statistics
Matches: 235, Mismatches: 21, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
128 117 0.50
130 118 0.50
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.27
Consensus pattern (130 bp):
ACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAACGAGAAATTGCAACCCAGCAC
AATAGGGCACGATTCCCCGAATTCCCAAACACCGAACATTGCCTTCGTTTTAAAGAATTTTTAAA
Found at i:95297521 original size:23 final size:23
Alignment explanation
Indices: 95297495--95297592 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
95297485 ATAAGTGCCA
95297495 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
95297518 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
95297541 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
95297563 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
95297586 CACTGAT
1 CACTGAT
95297593 CAATAACACT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:95297560 original size:45 final size:45
Alignment explanation
Indices: 95297502--95297590 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
95297492 CCACACTGAT
* *
95297502 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
95297547 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
95297591 ATCAATAACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:95304831 original size:23 final size:23
Alignment explanation
Indices: 95304800--95304899 Score: 157
Period size: 23 Copynumber: 4.3 Consensus size: 23
95304790 CACATAAGTG
95304800 CCACATGATATGTAGCCGAAGCTA
1 CCAC-TGATATGTAGCCGAAGCTA
95304824 CCACTGATATGTAGCCGAAGCTA
1 CCACTGATATGTAGCCGAAGCTA
* *
95304847 CCACTG-GATGTAGCCAAAGCTA
1 CCACTGATATGTAGCCGAAGCTA
*
95304869 CCACTGAAATGTAGCCGAAGCTA
1 CCACTGATATGTAGCCGAAGCTA
95304892 CCACTGAT
1 CCACTGAT
95304900 CAATAACACT
Statistics
Matches: 70, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
22 20 0.29
23 46 0.66
24 4 0.06
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (23 bp):
CCACTGATATGTAGCCGAAGCTA
Found at i:95304873 original size:45 final size:45
Alignment explanation
Indices: 95304809--95304897 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
95304799 GCCACATGAT
* *
95304809 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
95304854 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
95304898 ATCAATAACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:95319639 original size:16 final size:17
Alignment explanation
Indices: 95319620--95319656 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
95319610 ACTGGAATAG
95319620 AATAGGA-CTGTAATGA
1 AATAGGAGCTGTAATGA
*
95319636 AATA-GAGCTGTAATGG
1 AATAGGAGCTGTAATGA
95319652 AATAG
1 AATAG
95319657 ATTTCAATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 2 0.11
16 16 0.89
ACGTcount: A:0.43, C:0.05, G:0.27, T:0.24
Consensus pattern (17 bp):
AATAGGAGCTGTAATGA
Found at i:95319657 original size:16 final size:16
Alignment explanation
Indices: 95319627--95319657 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
95319617 TAGAATAGGA
95319627 CTGTAATGAAATAGAG
1 CTGTAATGAAATAGAG
*
95319643 CTGTAATGGAATAGA
1 CTGTAATGAAATAGA
95319658 TTTCAATTGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.06, G:0.26, T:0.26
Consensus pattern (16 bp):
CTGTAATGAAATAGAG
Found at i:95324847 original size:14 final size:15
Alignment explanation
Indices: 95324830--95324866 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
95324820 GTTTAATCCT
*
95324830 ATATTTTTAG-TCTA
1 ATATTTTTAGTTCAA
95324844 ATATTTTT-GTTCAA
1 ATATTTTTAGTTCAA
95324858 ATATTTTTA
1 ATATTTTTA
95324867 AATTTAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
13 1 0.05
14 19 0.95
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.59
Consensus pattern (15 bp):
ATATTTTTAGTTCAA
Found at i:95325544 original size:8 final size:9
Alignment explanation
Indices: 95325518--95325542 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
95325508 TATATAATAC
95325518 ATTAAAAAT
1 ATTAAAAAT
95325527 ATTAAAAAT
1 ATTAAAAAT
95325536 ATTAAAA
1 ATTAAAA
95325543 TAAATATTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
ATTAAAAAT
Found at i:95327827 original size:32 final size:33
Alignment explanation
Indices: 95327780--95327859 Score: 103
Period size: 32 Copynumber: 2.5 Consensus size: 33
95327770 TTTGAGAAGC
* *
95327780 CCTTATTTGAACACTTTTAAAAAAGGTTT-GACT
1 CCTTATTTGAGCACTTTTAAAAAAAGTTTAG-CT
*
95327813 -CTTATTTGAGCAC-TTTAAAAAAAGTTTAGGT
1 CCTTATTTGAGCACTTTTAAAAAAAGTTTAGCT
95327844 CCTTATTTGAGCACTT
1 CCTTATTTGAGCACTT
95327860 CAAAATATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
31 14 0.34
32 26 0.63
33 1 0.02
ACGTcount: A:0.31, C:0.15, G:0.14, T:0.40
Consensus pattern (33 bp):
CCTTATTTGAGCACTTTTAAAAAAAGTTTAGCT
Found at i:95333198 original size:27 final size:27
Alignment explanation
Indices: 95333167--95333221 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
95333157 GAGATCCAAA
95333167 ATGGACAAGAGGACAGATTGATTCTTG
1 ATGGACAAGAGGACAGATTGATTCTTG
95333194 ATGGACAAGAGGACAGATTGATTCTTG
1 ATGGACAAGAGGACAGATTGATTCTTG
95333221 A
1 A
95333222 AAAAGAAGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.35, C:0.11, G:0.29, T:0.25
Consensus pattern (27 bp):
ATGGACAAGAGGACAGATTGATTCTTG
Found at i:95342772 original size:16 final size:15
Alignment explanation
Indices: 95342751--95342788 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
95342741 ATTTACATTA
95342751 TATATTTCTAATTTTT
1 TATATTT-TAATTTTT
*
95342767 TATATTTTTATTTTT
1 TATATTTTAATTTTT
95342782 TAT-TTTT
1 TATATTTT
95342789 GAAAATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 4 0.19
15 10 0.48
16 7 0.33
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (15 bp):
TATATTTTAATTTTT
Found at i:95344718 original size:42 final size:42
Alignment explanation
Indices: 95344657--95344737 Score: 144
Period size: 42 Copynumber: 1.9 Consensus size: 42
95344647 TCTAATTAGA
95344657 AAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAGGG
1 AAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAGGG
* *
95344699 AAAATAGTTCCCTTGTTCTAATAAACTACTAAAAGATAA
1 AAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAA
95344738 AATAAAAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.30
Consensus pattern (42 bp):
AAAATAGTTCCCTTATTCTAATAAACTACTAAAACATAAGGG
Found at i:95344789 original size:19 final size:18
Alignment explanation
Indices: 95344765--95344808 Score: 79
Period size: 19 Copynumber: 2.4 Consensus size: 18
95344755 AATATGAATA
95344765 AAATTTATCTACCTAAAT
1 AAATTTATCTACCTAAAT
95344783 AAGATTTATCTACCTAAAT
1 AA-ATTTATCTACCTAAAT
95344802 AAATTTA
1 AAATTTA
95344809 AAATCAAAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 7 0.28
19 18 0.72
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.39
Consensus pattern (18 bp):
AAATTTATCTACCTAAAT
Found at i:95348640 original size:19 final size:18
Alignment explanation
Indices: 95348616--95348659 Score: 79
Period size: 19 Copynumber: 2.4 Consensus size: 18
95348606 AATATGAATA
95348616 AAATTTATCTACCTAAAT
1 AAATTTATCTACCTAAAT
95348634 AAGATTTATCTACCTAAAT
1 AA-ATTTATCTACCTAAAT
95348653 AAATTTA
1 AAATTTA
95348660 AAATATATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 7 0.28
19 18 0.72
ACGTcount: A:0.45, C:0.14, G:0.02, T:0.39
Consensus pattern (18 bp):
AAATTTATCTACCTAAAT
Found at i:95348682 original size:43 final size:43
Alignment explanation
Indices: 95348634--95348721 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
95348624 CTACCTAAAT
95348634 AAGATTTATCTACCTAAATAAATTTAAAATATATACATATTTC
1 AAGATTTATCTACCTAAATAAATTTAAAATATATACATATTTC
95348677 AAGATTTATCTACCTAAATAAATTTAAAATATATACATATTTC
1 AAGATTTATCTACCTAAATAAATTTAAAATATATACATATTTC
95348720 AA
1 AA
95348722 CACTTTGTGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.48, C:0.11, G:0.02, T:0.39
Consensus pattern (43 bp):
AAGATTTATCTACCTAAATAAATTTAAAATATATACATATTTC
Found at i:95367091 original size:26 final size:26
Alignment explanation
Indices: 95367055--95367164 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
95367045 TGATATAAAT
*
95367055 TGATAAAAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
95367081 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
95367107 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
95367133 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
95367159 TGATAA
1 TGATAA
95367165 GAATTTCATG
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 81 1.00
ACGTcount: A:0.35, C:0.05, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:95383375 original size:39 final size:39
Alignment explanation
Indices: 95383329--95383507 Score: 268
Period size: 39 Copynumber: 4.6 Consensus size: 39
95383319 GCTTTGATGA
*
95383329 GCTTCAGTTAGCCTTCAGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
*
95383368 GCTTCAGTTAGCCTTCGGGCTTCCATTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* *
95383407 GCTTCAGTTAGCCTTCGGGCTACCGTTTAACACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * *
95383446 ACTTCAGTTAGCCTTCGGGTTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
* * *
95383485 GCTTTAGCTAGACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
95383508 AAATCACGAT
Statistics
Matches: 125, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 125 1.00
ACGTcount: A:0.14, C:0.25, G:0.23, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTGTGT
Found at i:95392987 original size:11 final size:10
Alignment explanation
Indices: 95392953--95393022 Score: 54
Period size: 10 Copynumber: 7.0 Consensus size: 10
95392943 ATTTTAGATG
95392953 ATTATAAAAA
1 ATTATAAAAA
*
95392963 A-TAT-AAAC
1 ATTATAAAAA
95392971 ATTATAAAAAA
1 ATTAT-AAAAA
*
95392982 ATTATAGAAA
1 ATTATAAAAA
*
95392992 ATTATTTAAAA
1 ATTA-TAAAAA
* * *
95393003 TTTATTAAGA
1 ATTATAAAAA
95393013 ATTATAAAAA
1 ATTATAAAAA
95393023 TAGTAAAATA
Statistics
Matches: 46, Mismatches: 10, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
8 4 0.09
9 6 0.13
10 21 0.46
11 15 0.33
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.34
Consensus pattern (10 bp):
ATTATAAAAA
Found at i:95392995 original size:21 final size:20
Alignment explanation
Indices: 95392953--95393022 Score: 63
Period size: 21 Copynumber: 3.5 Consensus size: 20
95392943 ATTTTAGATG
*
95392953 ATTAT-AAAAAA-TATAAAC
1 ATTATAAAAAAATTATAAAA
95392971 ATTATAAAAAAATTATAGAAA
1 ATTATAAAAAAATTATA-AAA
** * *
95392992 ATTATTTAAAATTTATTAAGA
1 ATTATAAAAAAATTA-TAAAA
95393013 ATTATAAAAA
1 ATTATAAAAA
95393023 TAGTAAAATA
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
18 5 0.12
19 6 0.15
20 4 0.10
21 24 0.59
22 2 0.05
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.34
Consensus pattern (20 bp):
ATTATAAAAAAATTATAAAA
Found at i:95393533 original size:30 final size:31
Alignment explanation
Indices: 95393470--95393533 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
95393460 ACTTAACAAG
*
95393470 CAAATACCTCTAAAATAATAATAAAATTTAA
1 CAAATACCTCTAAAATAATAAGAAAATTTAA
* *
95393501 CAAATGCCTTTAAAATAATAAGAAAA-TTAA
1 CAAATACCTCTAAAATAATAAGAAAATTTAA
95393531 CAA
1 CAA
95393534 TAAAATAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 7 0.23
31 23 0.77
ACGTcount: A:0.58, C:0.12, G:0.03, T:0.27
Consensus pattern (31 bp):
CAAATACCTCTAAAATAATAAGAAAATTTAA
Found at i:95394373 original size:37 final size:37
Alignment explanation
Indices: 95394330--95394405 Score: 93
Period size: 36 Copynumber: 2.1 Consensus size: 37
95394320 TTTTTTTATA
* *
95394330 ATTTTTAACAATTTCTTATAATTAT-T-AATAACTACT
1 ATTTTTTACAATTT-TAATAATTATCTAAATAACTACT
* *
95394366 ATTTTTTATAATTTTAATAATTATCTAAATAATTACT
1 ATTTTTTACAATTTTAATAATTATCTAAATAACTACT
95394403 ATT
1 ATT
95394406 AATGAATTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
35 9 0.26
36 13 0.38
37 12 0.35
ACGTcount: A:0.39, C:0.08, G:0.00, T:0.53
Consensus pattern (37 bp):
ATTTTTTACAATTTTAATAATTATCTAAATAACTACT
Found at i:95394463 original size:20 final size:20
Alignment explanation
Indices: 95394426--95394464 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
95394416 GAAAAAAATA
*
95394426 AAATTTATTCTAAGTATTTT
1 AAATTTATTCTAAATATTTT
* *
95394446 AAATTTTTTTTAAATATTT
1 AAATTTATTCTAAATATTT
95394465 GACCATACAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.59
Consensus pattern (20 bp):
AAATTTATTCTAAATATTTT
Found at i:95405645 original size:14 final size:15
Alignment explanation
Indices: 95405626--95405665 Score: 55
Period size: 17 Copynumber: 2.6 Consensus size: 15
95405616 AATCTTTAAG
95405626 GATATG-TAATCTTA
1 GATATGATAATCTTA
95405640 GATATGATATAATCTTA
1 GATATG--ATAATCTTA
95405657 GATATGATA
1 GATATGATA
95405666 TGATATGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.26
15 3 0.13
17 14 0.61
ACGTcount: A:0.40, C:0.05, G:0.15, T:0.40
Consensus pattern (15 bp):
GATATGATAATCTTA
Found at i:95405652 original size:17 final size:17
Alignment explanation
Indices: 95405632--95405666 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
95405622 TAAGGATATG
95405632 TAATCTTAGATATGATA
1 TAATCTTAGATATGATA
95405649 TAATCTTAGATATGATA
1 TAATCTTAGATATGATA
95405666 T
1 T
95405667 GATATGATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.40, C:0.06, G:0.11, T:0.43
Consensus pattern (17 bp):
TAATCTTAGATATGATA
Found at i:95412508 original size:8 final size:8
Alignment explanation
Indices: 95412463--95412531 Score: 61
Period size: 8 Copynumber: 8.6 Consensus size: 8
95412453 CTTCTATTTC
95412463 AAAAAAA-
1 AAAAAAAG
95412470 AAAGAAAAG
1 AAA-AAAAG
* *
95412479 AAAAGAAT
1 AAAAAAAG
* *
95412487 ATAAAAAT
1 AAAAAAAG
*
95412495 ATAAAAAG
1 AAAAAAAG
95412503 AAAAAAAG
1 AAAAAAAG
95412511 -AAAAAAG
1 AAAAAAAG
95412518 AAAAAAAAG
1 -AAAAAAAG
95412527 AAAAA
1 AAAAA
95412532 TGGAGAGGCC
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
7 10 0.19
8 32 0.62
9 10 0.19
ACGTcount: A:0.84, C:0.00, G:0.10, T:0.06
Consensus pattern (8 bp):
AAAAAAAG
Found at i:95419136 original size:26 final size:26
Alignment explanation
Indices: 95419107--95419214 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
95419097 TGATACAAAT
95419107 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
95419133 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
95419159 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
95419185 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
95419211 TGAT
1 TGAT
95419215 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:95421246 original size:136 final size:137
Alignment explanation
Indices: 95421002--95421287 Score: 502
Period size: 136 Copynumber: 2.1 Consensus size: 137
95420992 GAGTAGTCTC
*
95421002 CCCAAATGGCCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
95421067 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGC-CTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAATTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
95421131 ACTGTTA
131 ACTGTTA
* *
95421138 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGTCTATGGGTCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
95421203 TGTTATCTGAATAAGGGTCTAAGGCCCAATTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAATTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
95421268 ACTGTTA
131 ACTGTTA
**
95421275 CCTGAATGGGCTT
1 CCCAAATGGGCTT
95421288 AGGCCCAATG
Statistics
Matches: 142, Mismatches: 7, Indels: 1
0.95 0.05 0.01
Matches are distributed among these distances:
136 111 0.78
137 31 0.22
ACGTcount: A:0.25, C:0.19, G:0.24, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAATTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:95422283 original size:11 final size:11
Alignment explanation
Indices: 95422267--95422295 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
95422257 GTAATGTTAA
95422267 AATATATACAT
1 AATATATACAT
95422278 AATATATACAT
1 AATATATACAT
95422289 -ATATATA
1 AATATATA
95422296 AAATAAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.39
11 11 0.61
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (11 bp):
AATATATACAT
Found at i:95422718 original size:70 final size:73
Alignment explanation
Indices: 95422586--95422719 Score: 159
Period size: 70 Copynumber: 1.9 Consensus size: 73
95422576 TAATGGTATT
* * * *
95422586 AAAATATATACATAATAATAGTATTACAAAGTGTACACATAGCATTAAAAATATATACATAATAT
1 AAAATACATACATAATAATAGTATTACAAAGTATACACATAGCATTAAAAATATAGAAATAATAT
95422651 GGCGTTGA
66 GGCGTTGA
** * *
95422659 AAAATACATACATAAT-ATAGTATTA-AAA-TATTTACATAGCATT-TACATATTAGAAATAATA
1 AAAATACATACATAATAATAGTATTACAAAGTATACACATAGCATTAAAAATA-TAGAAATAATA
95422720 ATGTTAAAAG
Statistics
Matches: 52, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
69 4 0.08
70 21 0.40
71 3 0.06
72 9 0.17
73 15 0.29
ACGTcount: A:0.51, C:0.09, G:0.08, T:0.32
Consensus pattern (73 bp):
AAAATACATACATAATAATAGTATTACAAAGTATACACATAGCATTAAAAATATAGAAATAATAT
GGCGTTGA
Found at i:95422952 original size:3 final size:3
Alignment explanation
Indices: 95422944--95423049 Score: 74
Period size: 3 Copynumber: 34.3 Consensus size: 3
95422934 AATATTTATA
* *
95422944 AAT AAT AAT AGT AA- ATAT AAT AAT AAT AAT AAT AAT ATT AAGT -AT
1 AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AA-T AAT
* * * * *
95422989 AGT -AT AAAT AAT ATGT ACAT AAC AGT AAT AAT AAT AAGT AAC AAT AAT
1 AAT AAT -AAT AAT A-AT A-AT AAT AAT AAT AAT AAT AA-T AAT AAT AAT
95423037 AAT AAT AAT AAT A
1 AAT AAT AAT AAT A
95423050 TAGAAATTCA
Statistics
Matches: 80, Mismatches: 15, Indels: 16
0.72 0.14 0.14
Matches are distributed among these distances:
2 3 0.04
3 66 0.82
4 11 0.14
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:95423097 original size:16 final size:16
Alignment explanation
Indices: 95423073--95423106 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
95423063 AAGTAAACAT
*
95423073 AATATAATAATATTAA
1 AATAAAATAATATTAA
*
95423089 AATAAAATAATTTTAA
1 AATAAAATAATATTAA
95423105 AA
1 AA
95423107 AAATACTATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AATAAAATAATATTAA
Done.