Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 28 of 295
Found at i:7615611 original size:43 final size:42
Alignment explanation
Indices: 7615544--7615700 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 42
7615534 AGCTCGTACA
* * *
7615544 ATGCCAACGTCCCAAAC-GGTGTCTTATATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACAGG-GTCTTACATGAAATCAAATAT-G
*
7615587 ATGCC-ACTGTCCCAGACAGGGTCTTACATGAAATCAAGTATG
1 ATGCCAAC-GTCCCAGACAGGGTCTTACATGAAATCAAATATG
* * *
7615629 ATGCCAACGTCCCAGAC-GTCGTCTTACACGTAAATCATAAGT-CG
1 ATGCCAACGTCCCAGACAG-GGTCTTACATG-AAATCA-AA-TATG
*
7615673 ATGCCAACGCCCCAGAC-GTGGTCTTACA
1 ATGCCAACGTCCCAGACAG-GGTCTTACA
7615701 CGATAACACA
Statistics
Matches: 97, Mismatches: 10, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
41 1 0.01
42 26 0.27
43 39 0.40
44 30 0.31
45 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACAGGGTCTTACATGAAATCAAATATG
Found at i:7615688 original size:86 final size:85
Alignment explanation
Indices: 7615544--7615700 Score: 196
Period size: 86 Copynumber: 1.8 Consensus size: 85
7615534 AGCTCGTACA
* * *
7615544 ATGCCAACGTCCCAAACGGTGTCTTATATGTAATCAAATATCGATGCCACTGTCCCAGACAG-GG
1 ATGCCAACGTCCCAAACGGTGTCTTACACGTAATCAAATATCGATGCCACTGCCCCAGAC-GTGG
7615608 TCTTACATGAAATCAAGTATG
65 TCTTACATGAAATCAAGTATG
* *
7615629 ATGCCAACGTCCCAGAC-GTCGTCTTACACGTAAATCATAA-GTCGATGCCAAC-GCCCCAGACG
1 ATGCCAACGTCCCAAACGGT-GTCTTACACGT-AATCA-AATATCGATGCC-ACTGCCCCAGACG
7615691 TGGTCTTACA
62 TGGTCTTACA
7615701 CGATAACACA
Statistics
Matches: 62, Mismatches: 5, Indels: 9
0.82 0.07 0.12
Matches are distributed among these distances:
84 2 0.03
85 26 0.42
86 30 0.48
87 4 0.06
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (85 bp):
ATGCCAACGTCCCAAACGGTGTCTTACACGTAATCAAATATCGATGCCACTGCCCCAGACGTGGT
CTTACATGAAATCAAGTATG
Found at i:7623324 original size:62 final size:62
Alignment explanation
Indices: 7623258--7623384 Score: 254
Period size: 62 Copynumber: 2.0 Consensus size: 62
7623248 AAGGAAGAAC
7623258 AGAAAAATAAATTTCAATTACAAAGAGAAGAAGAAAACTTTTAGCCAAATAGTGGGGGAGAG
1 AGAAAAATAAATTTCAATTACAAAGAGAAGAAGAAAACTTTTAGCCAAATAGTGGGGGAGAG
7623320 AGAAAAATAAATTTCAATTACAAAGAGAAGAAGAAAACTTTTAGCCAAATAGTGGGGGAGAG
1 AGAAAAATAAATTTCAATTACAAAGAGAAGAAGAAAACTTTTAGCCAAATAGTGGGGGAGAG
7623382 AGA
1 AGA
7623385 GAGGAACATA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 65 1.00
ACGTcount: A:0.50, C:0.08, G:0.23, T:0.19
Consensus pattern (62 bp):
AGAAAAATAAATTTCAATTACAAAGAGAAGAAGAAAACTTTTAGCCAAATAGTGGGGGAGAG
Found at i:7623432 original size:6 final size:6
Alignment explanation
Indices: 7623421--7623459 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
7623411 TTACTTTAAC
*
7623421 AAAAAT AAAAAT AAAAAT AAAAAT AAAAA- CAAAAT AAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAA
7623460 TTTAACAACA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 4 0.13
6 26 0.87
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.13
Consensus pattern (6 bp):
AAAAAT
Found at i:7628256 original size:20 final size:20
Alignment explanation
Indices: 7628224--7628271 Score: 64
Period size: 18 Copynumber: 2.5 Consensus size: 20
7628214 CCAAAATTTT
*
7628224 ATTTTAATTTAT-TTAT-AC
1 ATTTTAATTTTTATTATCAC
7628242 ATTTTAATTTTTATTATGCAC
1 ATTTTAATTTTTATTAT-CAC
7628263 ATTTTAATT
1 ATTTTAATT
7628272 GTGTACCTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 11 0.42
19 4 0.15
21 11 0.42
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.60
Consensus pattern (20 bp):
ATTTTAATTTTTATTATCAC
Found at i:7635028 original size:5 final size:5
Alignment explanation
Indices: 7635018--7635046 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
7635008 ATTACAAAAT
7635018 TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
7635047 TTGTTTCTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTC
Found at i:7640190 original size:16 final size:17
Alignment explanation
Indices: 7640165--7640204 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
7640155 AAACATCAAC
*
7640165 TATTTTTTTAGATAT-A
1 TATTTATTTAGATATAA
*
7640181 TATTTATTTATATATAA
1 TATTTATTTAGATATAA
7640198 TATTTAT
1 TATTTAT
7640205 ATGTCAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
TATTTATTTAGATATAA
Found at i:7645482 original size:21 final size:21
Alignment explanation
Indices: 7645456--7645496 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7645446 ATCTGCTCAA
* *
7645456 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
7645477 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
7645497 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:7652499 original size:24 final size:24
Alignment explanation
Indices: 7652453--7652499 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
7652443 TTGGCTCTCA
* *
7652453 CGAGCTTCCGTTATATGGTTCTTG
1 CGAGCTTCCGTTATATAGCTCTTG
7652477 CGAGCTTCTCGTTA-ATAGCTCTT
1 CGAGCTTC-CGTTATATAGCTCTT
7652500 CGGAGCATCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.15, C:0.23, G:0.21, T:0.40
Consensus pattern (24 bp):
CGAGCTTCCGTTATATAGCTCTTG
Found at i:7652704 original size:25 final size:25
Alignment explanation
Indices: 7652660--7652728 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
7652650 GGCTAGCTTG
7652660 AACTTCCCGATTA-A-GGCTCACATA
1 AACTTCCCG-TTACATGGCTCACATA
* *
7652684 AACTTCTCGTTACATGGCTCACTTA
1 AACTTCCCGTTACATGGCTCACATA
* *
7652709 AGCTTCCCGTTATATGGCTC
1 AACTTCCCGTTACATGGCTC
7652729 GAAAGAGCTT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
23 3 0.08
24 9 0.24
25 26 0.68
ACGTcount: A:0.25, C:0.29, G:0.14, T:0.32
Consensus pattern (25 bp):
AACTTCCCGTTACATGGCTCACATA
Found at i:7655185 original size:40 final size:40
Alignment explanation
Indices: 7655104--7655324 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
7655094 AAACCAAGTA
** * *
7655104 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
7655143 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
7655183 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* *
7655223 CCTTTGGGACTTGGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
7655263 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
7655303 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
7655325 CAATCCGAAT
Statistics
Matches: 168, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 26 0.15
40 142 0.85
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:7658787 original size:65 final size:65
Alignment explanation
Indices: 7658683--7658814 Score: 219
Period size: 65 Copynumber: 2.0 Consensus size: 65
7658673 ATTATTTTAG
* *
7658683 TTTTACATTGGTGTAAGTGGATCACTCCCTTAATATTTAAATTTTTAATAGGTTTTTAATAATAA
1 TTTTACATTAGTGTAAGTGGATCACTCCCTTAATATTTAAATTTTTAATAGATTTTTAATAATAA
* * *
7658748 TTTTATATTAGTGTAAGTGGATCCCTCCCTTAATATTTAAATTTTTAATCGATTTTTAATAATAA
1 TTTTACATTAGTGTAAGTGGATCACTCCCTTAATATTTAAATTTTTAATAGATTTTTAATAATAA
7658813 TT
1 TT
7658815 GTTTTTTACT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
65 62 1.00
ACGTcount: A:0.32, C:0.10, G:0.11, T:0.48
Consensus pattern (65 bp):
TTTTACATTAGTGTAAGTGGATCACTCCCTTAATATTTAAATTTTTAATAGATTTTTAATAATAA
Found at i:7659353 original size:40 final size:40
Alignment explanation
Indices: 7659293--7659370 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
7659283 TATTCTAGTC
* *
7659293 TGTTCAAAAGTTTCAGATAATAATTAAATCATTTTTAATA
1 TGTTCAAAAGTTTCAAATAATAATTAAATAATTTTTAATA
* *
7659333 TGTTGAAAAGTTTTAAATAATAATTAAATAATTTTTAA
1 TGTTCAAAAGTTTCAAATAATAATTAAATAATTTTTAA
7659371 CATATTTAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.44
Consensus pattern (40 bp):
TGTTCAAAAGTTTCAAATAATAATTAAATAATTTTTAATA
Found at i:7669793 original size:21 final size:20
Alignment explanation
Indices: 7669739--7669793 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 20
7669729 TTCTTTTCCA
7669739 ATTTTTTTTTATCCTTGTTCT
1 ATTTTTTTTT-TCCTTGTTCT
** *
7669760 ATTTTTTCCTTCCTGTTTTCT
1 ATTTTTTTTTTCCT-TGTTCT
*
7669781 GTTTTTTTTTTCC
1 ATTTTTTTTTTCC
7669794 ACATTCATGC
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
20 4 0.15
21 23 0.85
ACGTcount: A:0.05, C:0.18, G:0.05, T:0.71
Consensus pattern (20 bp):
ATTTTTTTTTTCCTTGTTCT
Found at i:7670184 original size:25 final size:25
Alignment explanation
Indices: 7670155--7670234 Score: 71
Period size: 25 Copynumber: 3.4 Consensus size: 25
7670145 TTCAACTTTG
7670155 CTTGAATCAGGTCTATCATCTTCTA
1 CTTGAATCAGGTCTATCATCTTCTA
* * * *
7670180 CTTGAATCAAG--AATC-TCGT-GA
1 CTTGAATCAGGTCTATCATCTTCTA
7670201 -TATGAATCAGGTCTATCATCTTCTA
1 CT-TGAATCAGGTCTATCATCTTCTA
*
7670226 TTTGAATCA
1 CTTGAATCA
7670235 AGAATCTCGT
Statistics
Matches: 41, Mismatches: 8, Indels: 12
0.67 0.13 0.20
Matches are distributed among these distances:
20 1 0.02
21 9 0.22
22 3 0.07
23 6 0.15
24 3 0.07
25 18 0.44
26 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.38
Consensus pattern (25 bp):
CTTGAATCAGGTCTATCATCTTCTA
Found at i:7670224 original size:46 final size:46
Alignment explanation
Indices: 7670157--7670249 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
7670147 CAACTTTGCT
7670157 TGAATCAGGTCTATCATCTTCTACTTGAATCAAGAATCTCGTGATA
1 TGAATCAGGTCTATCATCTTCTACTTGAATCAAGAATCTCGTGATA
*
7670203 TGAATCAGGTCTATCATCTTCTATTTGAATCAAGAATCTCGTGATA
1 TGAATCAGGTCTATCATCTTCTACTTGAATCAAGAATCTCGTGATA
7670249 T
1 T
7670250 TAAACTTTGC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (46 bp):
TGAATCAGGTCTATCATCTTCTACTTGAATCAAGAATCTCGTGATA
Found at i:7670250 original size:23 final size:23
Alignment explanation
Indices: 7670181--7670250 Score: 56
Period size: 23 Copynumber: 3.0 Consensus size: 23
7670171 CATCTTCTAC
7670181 TTGAATCAAGAATCTCGTGATA-
1 TTGAATCAAGAATCTCGTGATAT
* * **
7670203 -TGAATCAGGTCTATCATC-TTCTAT
1 TTGAATCAAG--AATC-TCGTGATAT
7670227 TTGAATCAAGAATCTCGTGATAT
1 TTGAATCAAGAATCTCGTGATAT
7670250 T
1 T
7670251 AAACTTTGCT
Statistics
Matches: 34, Mismatches: 8, Indels: 11
0.64 0.15 0.21
Matches are distributed among these distances:
21 8 0.24
22 2 0.06
23 14 0.41
24 2 0.06
25 8 0.24
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (23 bp):
TTGAATCAAGAATCTCGTGATAT
Found at i:7672686 original size:24 final size:25
Alignment explanation
Indices: 7672641--7672687 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
7672631 TAATTTTTGT
* *
7672641 TGTCATGTAGTATAAGACAAAATAA
1 TGTCATGTAGAATAAGAAAAAATAA
*
7672666 TGTCATGTA-AATAATAAAAAAT
1 TGTCATGTAGAATAAGAAAAAAT
7672688 TGATAGTCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 10 0.53
25 9 0.47
ACGTcount: A:0.51, C:0.06, G:0.13, T:0.30
Consensus pattern (25 bp):
TGTCATGTAGAATAAGAAAAAATAA
Found at i:7673136 original size:20 final size:20
Alignment explanation
Indices: 7673111--7673148 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
7673101 TTGTACTTTT
7673111 TTAATTTAAAAT-TATATACC
1 TTAA-TTAAAATATATATACC
7673131 TTAATTAAAATATATATA
1 TTAATTAAAATATATATA
7673149 TATAAAGACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (20 bp):
TTAATTAAAATATATATACC
Found at i:7673523 original size:15 final size:16
Alignment explanation
Indices: 7673493--7673525 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
7673483 TTTTGAATAT
7673493 TTTAAAATACTATCAA
1 TTTAAAATACTATCAA
*
7673509 TTTAAAAT-TTATCAA
1 TTTAAAATACTATCAA
7673524 TT
1 TT
7673526 CATTATGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (16 bp):
TTTAAAATACTATCAA
Found at i:7675493 original size:12 final size:12
Alignment explanation
Indices: 7675478--7675528 Score: 57
Period size: 12 Copynumber: 4.2 Consensus size: 12
7675468 AGATAAAGCC
**
7675478 AAAGAAAATTAG
1 AAAGAAAAAAAG
7675490 AAAGAAAAGAAAG
1 AAAGAAAA-AAAG
*
7675503 AAAGAAAAAGAG
1 AAAGAAAAAAAG
*
7675515 AAAGAAGAAAAG
1 AAAGAAAAAAAG
7675527 AA
1 AA
7675529 GGACACACAC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
12 23 0.70
13 10 0.30
ACGTcount: A:0.75, C:0.00, G:0.22, T:0.04
Consensus pattern (12 bp):
AAAGAAAAAAAG
Found at i:7675510 original size:25 final size:24
Alignment explanation
Indices: 7675455--7675528 Score: 67
Period size: 25 Copynumber: 2.9 Consensus size: 24
7675445 ACAAATTAGT
*
7675455 AAAAGAAAAAGAAAGATAAAGCCAAAGA
1 AAAAGAGAAAGAAA-A-AAAG--AAAGA
**
7675483 AAATTAGAAAGAAAAGAAAGAAAGA
1 AAAAGAGAAAGAAAA-AAAGAAAGA
*
7675508 AAAAGAGAAAGAAGAAAAGAA
1 AAAAGAGAAAGAAAAAAAGAA
7675529 GGACACACAC
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
24 6 0.15
25 17 0.44
27 5 0.13
28 11 0.28
ACGTcount: A:0.73, C:0.03, G:0.20, T:0.04
Consensus pattern (24 bp):
AAAAGAGAAAGAAAAAAAGAAAGA
Found at i:7679446 original size:23 final size:24
Alignment explanation
Indices: 7679387--7679449 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 24
7679377 GCTTTTTAAA
*
7679387 TTAATAATATATATTTTAAAATTT
1 TTAAAAATATATATTTTAAAATTT
* *
7679411 TATAAAGAA-ATAT-TTTTGAACTTT
1 T-TAAA-AATATATATTTTAAAATTT
7679435 TTAAAAATATATATT
1 TTAAAAATATATATT
7679450 ATATGATTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
22 2 0.06
23 8 0.25
24 13 0.41
25 7 0.22
26 2 0.06
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.49
Consensus pattern (24 bp):
TTAAAAATATATATTTTAAAATTT
Found at i:7682232 original size:23 final size:24
Alignment explanation
Indices: 7682200--7682253 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 24
7682190 TAGATGAGAG
7682200 TATAACAAC-AAAATATTAAA-ATA
1 TATAA-AACAAAAATATTAAATATA
*
7682223 TAGTAAAACAAAAATTTTAAATATA
1 TA-TAAAACAAAAATATTAAATATA
7682248 TATAAA
1 TATAAA
7682254 TATACAAAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 5 0.19
24 17 0.63
25 5 0.19
ACGTcount: A:0.63, C:0.06, G:0.02, T:0.30
Consensus pattern (24 bp):
TATAAAACAAAAATATTAAATATA
Found at i:7682993 original size:4 final size:4
Alignment explanation
Indices: 7682984--7683017 Score: 68
Period size: 4 Copynumber: 8.5 Consensus size: 4
7682974 TAAGCTGAGT
7682984 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT
7683018 ACTGAGTTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 30 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:7688813 original size:10 final size:10
Alignment explanation
Indices: 7688798--7688831 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
7688788 GAATTAATCG
7688798 ATTTTATAAA
1 ATTTTATAAA
*
7688808 ATTTTATATA
1 ATTTTATAAA
7688818 ATTTTATTAAA
1 ATTTTA-TAAA
7688829 ATT
1 ATT
7688832 AAATTAGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 15 0.71
11 6 0.29
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
ATTTTATAAA
Found at i:7689800 original size:15 final size:15
Alignment explanation
Indices: 7689780--7689812 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
7689770 ACCTACATGA
7689780 TAATAAATCAGGGTC
1 TAATAAATCAGGGTC
7689795 TAATAAATCAGGGTC
1 TAATAAATCAGGGTC
7689810 TAA
1 TAA
7689813 AATGCAGTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.42, C:0.12, G:0.18, T:0.27
Consensus pattern (15 bp):
TAATAAATCAGGGTC
Found at i:7691352 original size:18 final size:20
Alignment explanation
Indices: 7691316--7691352 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
7691306 TTTTTTTTAA
7691316 TTAAGTATTTAAGTTTGATT
1 TTAAGTATTTAAGTTTGATT
7691336 TTAA-TATTTAA-TTTGAT
1 TTAAGTATTTAAGTTTGAT
7691353 ATATAATTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 7 0.41
20 4 0.24
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (20 bp):
TTAAGTATTTAAGTTTGATT
Found at i:7691359 original size:19 final size:19
Alignment explanation
Indices: 7691321--7691359 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7691311 TTTAATTAAG
*
7691321 TATTTAAGTTTGATTTTAA
1 TATTTAAGTTTGATTATAA
7691340 TATTTAA-TTTGATATATAA
1 TATTTAAGTTTGAT-TATAA
7691359 T
1 T
7691360 TTTTTTTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (19 bp):
TATTTAAGTTTGATTATAA
Found at i:7695886 original size:3 final size:3
Alignment explanation
Indices: 7695878--7695902 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7695868 ACAAATGGTT
7695878 TTG TTG TTG TTG TTG TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG T
7695903 ATGTGTAGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:7700899 original size:13 final size:13
Alignment explanation
Indices: 7700881--7700905 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7700871 AAATTATGTT
7700881 AAAATTAAATATA
1 AAAATTAAATATA
7700894 AAAATTAAATAT
1 AAAATTAAATAT
7700906 TAAATTTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (13 bp):
AAAATTAAATATA
Found at i:7701355 original size:6 final size:6
Alignment explanation
Indices: 7701344--7701370 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
7701334 TTATTTATTA
7701344 TTTTCT TTTTCT TTTTCT TTTTCT TTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTT
7701371 CCCTTTCACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTCT
Found at i:7720253 original size:22 final size:22
Alignment explanation
Indices: 7720228--7720279 Score: 52
Period size: 22 Copynumber: 2.3 Consensus size: 22
7720218 TCATTTTAAT
*
7720228 TATTAAAAATT-ATTTATTGTTA
1 TATTAAAAATTAATTAATT-TTA
**
7720250 TATTTTAAATTAATTAATTTTA
1 TATTAAAAATTAATTAATTTTA
7720272 TATCTAAA
1 TAT-TAAA
7720280 TTTTTTAATT
Statistics
Matches: 23, Mismatches: 5, Indels: 3
0.74 0.16 0.10
Matches are distributed among these distances:
22 15 0.65
23 8 0.35
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (22 bp):
TATTAAAAATTAATTAATTTTA
Found at i:7729227 original size:64 final size:62
Alignment explanation
Indices: 7729118--7729239 Score: 151
Period size: 64 Copynumber: 1.9 Consensus size: 62
7729108 AAAATATGAT
* *
7729118 CAAATAATTAATAAAATAATAAATATACAACATATATTGAAATTTATGAATATATATATTTA
1 CAAATAATTAATAAAATAATAAATATACAACATATATTGAAATTTATAAACATATATATTTA
*
7729180 CAAATAATATAAATAAAATAATAAAT-TACTAA-ATATAATT-AGTATTTATAAACATATATA
1 CAAATAAT-T-AATAAAATAATAAATATAC-AACATAT-ATTGA-AATTTATAAACATATATA
7729240 CATATAAGGT
Statistics
Matches: 52, Mismatches: 3, Indels: 8
0.83 0.05 0.13
Matches are distributed among these distances:
62 8 0.15
63 9 0.17
64 35 0.67
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.36
Consensus pattern (62 bp):
CAAATAATTAATAAAATAATAAATATACAACATATATTGAAATTTATAAACATATATATTTA
Found at i:7742927 original size:46 final size:47
Alignment explanation
Indices: 7742780--7743046 Score: 178
Period size: 46 Copynumber: 5.7 Consensus size: 47
7742770 ATTGTGAACT
* * *
7742780 AGTGTAAGA-CATGTCTGGGACATGCATCAGCCAC-ATTATG-AGAG-C
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGA-GATGTA-AGTC
* * * * *
7742825 TAGTGTAAGACCATGTCTGAGACATGGCATCGACATTGAGACG--AGTGC
1 -AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGT-C
* *
7742873 TAGAGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGACGTAAGTC
1 -AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAAGTC
* * * *
7742920 AGTGTAAGA-CATGTCTGAGACATGTATTGG-CTATGAGATGT--GTC
1 AGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGATGTAAGTC
* * * *
7742964 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGATATGCTAGAGCC
1 AGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGATG-TA-AGTC
* *
7743014 TGTGTAAGACCATGTCTGGGACACGACATCGGC
1 AGTGTAAGACCATGTCTGGGACATG-CATCGGC
7743047 ACATTACCCC
Statistics
Matches: 177, Mismatches: 28, Indels: 28
0.76 0.12 0.12
Matches are distributed among these distances:
44 12 0.07
45 15 0.08
46 67 0.38
47 29 0.16
48 21 0.12
49 2 0.01
50 31 0.18
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGATGTAAGTC
Found at i:7743019 original size:94 final size:94
Alignment explanation
Indices: 7742778--7743036 Score: 255
Period size: 94 Copynumber: 2.8 Consensus size: 94
7742768 TTATTGTGAA
* * *
7742778 CTAGTGTAAGACATGTCTGGGACATGCATCAGCCACA-TTATG-AGAGCTAGTGTAAGACCATGT
1 CTAGTGTAAGACATGTCTGGGACATGCATC-GGCATAGATATGTAGAGCT-GTGTAAGACCATGT
7742841 CTGAGACATGGCATCGACATTGAGACGAGTG
64 CTGAGACATGGCATCGACATTGAGACGAGTG
* * * * * *
7742872 CTAGAGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA-AGTCAGTGTAAGA-CATGTC
1 CTAGTGTAAGACATGTCTGGGACATGCATCGGCATAGATATGTAGAG-CTGTGTAAGACCATGTC
* * * * *
7742935 TGAGACAT-GTATTGGC-TATGAGATGTGT-
65 TGAGACATGGCATCGACAT-TGAGACGAGTG
7742963 C-AGTGTAAGACCATGTCTGGGACATGGCATCGGCATAGATATGCTAGAGCCTGTGTAAGACCAT
1 CTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATAGATATG-TAGAG-CTGTGTAAGACCAT
*
7743027 GTCTGGGACA
62 GTCTGAGACA
7743037 CGACATCGGC
Statistics
Matches: 134, Mismatches: 22, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
90 8 0.06
91 16 0.12
92 26 0.19
93 18 0.13
94 52 0.39
95 14 0.10
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (94 bp):
CTAGTGTAAGACATGTCTGGGACATGCATCGGCATAGATATGTAGAGCTGTGTAAGACCATGTCT
GAGACATGGCATCGACATTGAGACGAGTG
Found at i:7743140 original size:30 final size:30
Alignment explanation
Indices: 7743104--7743164 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
7743094 ATGGTTCAAC
7743104 AGTGAAAGTTACGATTTCAAGTTAACGAAG
1 AGTGAAAGTTACGATTTCAAGTTAACGAAG
7743134 AGTGAAAGTTACGATTTCAAGTTAACGAAG
1 AGTGAAAGTTACGATTTCAAGTTAACGAAG
7743164 A
1 A
7743165 AAGTATAACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.41, C:0.10, G:0.23, T:0.26
Consensus pattern (30 bp):
AGTGAAAGTTACGATTTCAAGTTAACGAAG
Found at i:7747447 original size:3 final size:3
Alignment explanation
Indices: 7747439--7747738 Score: 70
Period size: 3 Copynumber: 101.0 Consensus size: 3
7747429 CAGGAGAGTG
* * *
7747439 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA CTA TCA TT- CTA TATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA
* * * * * * ** *
7747487 CTA TTA TTG TT- TTC TT- TT- TTA TTT TTA TTA GTA ATA ACA -TA ATA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
7747531 GTG TTT TTA TTA TT- TTA TTA TTA TT- TTCA CCTTT TTA TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A --TTA TTA TTA TTA TTA
* * * * * *
7747577 TTA TTAA CCTA TTA TTA TTA TTT TTA TTA ATA -TA GTG TTA TT- TTC
1 TTA TT-A -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* ** * * * *
7747622 TT- TTA TT- TTA TTA TCA TTA TTA ACA -TA TCA TTT TTA TTT TTA TCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * ** * *
7747667 TTA ATA -TA TTA TCA TGC TTA TTA TTA TTCCA TTA TTA TTT TCTA CT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT--A TTA TTA TTA T-TA TTA
*
7747713 TTA TTA CTGTA TTA TTA CTA TTA TTA
1 TTA TTA -T-TA TTA TTA TTA TTA TTA
7747739 CTGTCCTATT
Statistics
Matches: 216, Mismatches: 57, Indels: 48
0.67 0.18 0.15
Matches are distributed among these distances:
2 24 0.11
3 177 0.82
4 7 0.03
5 6 0.03
6 2 0.01
ACGTcount: A:0.29, C:0.08, G:0.03, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:7747748 original size:20 final size:19
Alignment explanation
Indices: 7747709--7747750 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
7747699 TATTATTTTC
*
7747709 TACTTTATTACTGTATTAT
1 TACTTTATTACTGTACTAT
*
7747728 TACTATTATTACTGTCCTAT
1 TACT-TTATTACTGTACTAT
7747748 TAC
1 TAC
7747751 CAAACTAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.26, C:0.17, G:0.05, T:0.52
Consensus pattern (19 bp):
TACTTTATTACTGTACTAT
Found at i:7747831 original size:23 final size:24
Alignment explanation
Indices: 7747805--7747866 Score: 74
Period size: 23 Copynumber: 2.7 Consensus size: 24
7747795 CTTTTCCCTT
*
7747805 TTTTCATTTATTTATTCATTT-TA
1 TTTTCATTTATTTATTAATTTCTA
* **
7747828 TTTTCATTTTTTTACAAATTTCTA
1 TTTTCATTTATTTATTAATTTCTA
7747852 TTTT-ATTTATTTATT
1 TTTTCATTTATTTATT
7747867 TTAGATTTTT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
23 25 0.81
24 6 0.19
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (24 bp):
TTTTCATTTATTTATTAATTTCTA
Found at i:7754072 original size:6 final size:6
Alignment explanation
Indices: 7754061--7754088 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
7754051 ATTTTGTAGG
7754061 TATGTA TATGTA TATGTA TATGTA TATG
1 TATGTA TATGTA TATGTA TATGTA TATG
7754089 GTTAAATGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.18, T:0.50
Consensus pattern (6 bp):
TATGTA
Found at i:7755571 original size:58 final size:59
Alignment explanation
Indices: 7755489--7755607 Score: 143
Period size: 58 Copynumber: 2.0 Consensus size: 59
7755479 GCAAAAACAC
* * * * * *
7755489 AAGATTAGATATCAATTTAGGAAAAAGTGTC-AAGTTTATGTAATAAATTGGACCA-AAA
1 AAGATTAAATACCAAATTAAGAAAAAGTGTCAAAG-TCAAGTAATAAATTGGACCATAAA
* *
7755547 AAGATTAAATACCAAATTAAGAAAATGTGTCAAAGTCAAGTACTAAATTGGACCATAAA
1 AAGATTAAATACCAAATTAAGAAAAAGTGTCAAAGTCAAGTAATAAATTGGACCATAAA
7755606 AA
1 AA
7755608 AGTCAAGGTA
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
58 43 0.84
59 8 0.16
ACGTcount: A:0.50, C:0.09, G:0.15, T:0.26
Consensus pattern (59 bp):
AAGATTAAATACCAAATTAAGAAAAAGTGTCAAAGTCAAGTAATAAATTGGACCATAAA
Found at i:7755672 original size:11 final size:10
Alignment explanation
Indices: 7755647--7755671 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7755637 TGTGAAGTTT
7755647 AAAAATAAAA
1 AAAAATAAAA
7755657 AAAAATAAAA
1 AAAAATAAAA
7755667 AAAAA
1 AAAAA
7755672 ACCTCTATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.00, T:0.08
Consensus pattern (10 bp):
AAAAATAAAA
Found at i:7756032 original size:30 final size:30
Alignment explanation
Indices: 7755998--7756057 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
7755988 ACTTAACAAG
7755998 CAAAT-ACTTCTAAAATAATAATAAAATTAA
1 CAAATGACTT-TAAAATAATAATAAAATTAA
*
7756028 CAAATGACTTTAAATTAATAATAAAATTAA
1 CAAATGACTTTAAAATAATAATAAAATTAA
7756058 TAATAAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 24 0.86
31 4 0.14
ACGTcount: A:0.58, C:0.08, G:0.02, T:0.32
Consensus pattern (30 bp):
CAAATGACTTTAAAATAATAATAAAATTAA
Found at i:7756056 original size:12 final size:12
Alignment explanation
Indices: 7756039--7756066 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
7756029 AAATGACTTT
7756039 AAATTAATAATA
1 AAATTAATAATA
7756051 AAATTAATAATA
1 AAATTAATAATA
7756063 AAAT
1 AAAT
7756067 AAGTTTTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAATTAATAATA
Found at i:7756170 original size:24 final size:24
Alignment explanation
Indices: 7756141--7756186 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
7756131 AAATATGGAG
* *
7756141 AAAACAACAAGAAAATAACATTCA
1 AAAACAAAAAAAAAATAACATTCA
*
7756165 AAAACAAAAAAAAAATAGCATT
1 AAAACAAAAAAAAAATAACATT
7756187 TTTTTTTGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.70, C:0.13, G:0.04, T:0.13
Consensus pattern (24 bp):
AAAACAAAAAAAAAATAACATTCA
Found at i:7756602 original size:14 final size:14
Alignment explanation
Indices: 7756583--7756610 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7756573 TTTGGTAACG
7756583 TGTAAAAGCTTTTC
1 TGTAAAAGCTTTTC
7756597 TGTAAAAGCTTTTC
1 TGTAAAAGCTTTTC
7756611 AGGTTTTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.43
Consensus pattern (14 bp):
TGTAAAAGCTTTTC
Found at i:7756768 original size:6 final size:6
Alignment explanation
Indices: 7756757--7756781 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7756747 CACATTCTTC
7756757 TCCCCT TCCCCT TCCCCT TCCCCT T
1 TCCCCT TCCCCT TCCCCT TCCCCT T
7756782 GGGTTGCAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.64, G:0.00, T:0.36
Consensus pattern (6 bp):
TCCCCT
Found at i:7758844 original size:23 final size:23
Alignment explanation
Indices: 7758800--7758844 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
7758790 ACCAATTCAA
*
7758800 CATATTTTAAAGATAAATTCATG
1 CATATTTTAAAGATAAAGTCATG
*
7758823 CATATTTATAAA-ATAACGTCAT
1 CATATTT-TAAAGATAAAGTCAT
7758845 CACATACCCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.38
Consensus pattern (23 bp):
CATATTTTAAAGATAAAGTCATG
Found at i:7762885 original size:43 final size:43
Alignment explanation
Indices: 7762821--7762904 Score: 105
Period size: 43 Copynumber: 2.0 Consensus size: 43
7762811 GATACTTTTA
* *
7762821 ATGTGGTGTAATATTAGTTATGCACTTGAACAATATTATTATT
1 ATGTGGTGTAATACTAATTATGCACTTGAACAATATTATTATT
* * * * *
7762864 ATGTGGTGTACTACTAATTATGTATTTGGATAATATTATTA
1 ATGTGGTGTAATACTAATTATGCACTTGAACAATATTATTA
7762905 ATTTCTAGTA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.32, C:0.06, G:0.17, T:0.45
Consensus pattern (43 bp):
ATGTGGTGTAATACTAATTATGCACTTGAACAATATTATTATT
Found at i:7763137 original size:16 final size:16
Alignment explanation
Indices: 7763113--7763155 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
7763103 TAAAAATAAT
* *
7763113 TTAAAATATAATTTTA
1 TTAATATATAAATTTA
7763129 TTAATATATATAAATTTA
1 TT-A-ATATATAAATTTA
7763147 TTAATATAT
1 TTAATATAT
7763156 GTAAAAATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
16 8 0.35
17 2 0.09
18 13 0.57
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
TTAATATATAAATTTA
Found at i:7763141 original size:18 final size:18
Alignment explanation
Indices: 7763118--7763160 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
7763108 ATAATTTAAA
*
7763118 ATATAATTTTATTAATAT
1 ATATAAATTTATTAATAT
7763136 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
*
7763154 ATGTAAA
1 ATATAAA
7763161 AATAGTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (18 bp):
ATATAAATTTATTAATAT
Found at i:7764605 original size:9 final size:9
Alignment explanation
Indices: 7764591--7764619 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
7764581 AGATTTAATG
7764591 AAAATTTTC
1 AAAATTTTC
7764600 AAAATTTTC
1 AAAATTTTC
7764609 AAAATTTTC
1 AAAATTTTC
7764618 AA
1 AA
7764620 GAGGCCTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.41
Consensus pattern (9 bp):
AAAATTTTC
Found at i:7764636 original size:32 final size:29
Alignment explanation
Indices: 7764600--7764678 Score: 77
Period size: 30 Copynumber: 2.6 Consensus size: 29
7764590 GAAAATTTTC
7764600 AAAATTTTCAAAATTTTCAAGAGGCCTAAATA
1 AAAATTTTCAAAATTTT-AAG-GGCCTAAA-A
*** *
7764632 AAAATTAAAAAAATTTTAAGGGTCTAAAA
1 AAAATTTTCAAAATTTTAAGGGCCTAAAA
*
7764661 ATAATTTTCAAAAATTTT
1 AAAATTTTC-AAAATTTT
7764679 GGGACCACTC
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
29 6 0.16
30 15 0.39
31 3 0.08
32 14 0.37
ACGTcount: A:0.51, C:0.08, G:0.08, T:0.34
Consensus pattern (29 bp):
AAAATTTTCAAAATTTTAAGGGCCTAAAA
Found at i:7764878 original size:25 final size:25
Alignment explanation
Indices: 7764817--7764871 Score: 101
Period size: 25 Copynumber: 2.2 Consensus size: 25
7764807 AAGTTTGAGT
7764817 GCTTAAAATTTTAAAAATTAAATTC
1 GCTTAAAATTTTAAAAATTAAATTC
7764842 GCTTAAAATTTTAAAAATTAAATTC
1 GCTTAAAATTTTAAAAATTAAATTC
*
7764867 TCTTA
1 GCTTA
7764872 TATTTTTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.45, C:0.09, G:0.04, T:0.42
Consensus pattern (25 bp):
GCTTAAAATTTTAAAAATTAAATTC
Found at i:7765100 original size:21 final size:21
Alignment explanation
Indices: 7765061--7765102 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7765051 AATTATCATC
*
7765061 TAAAATTAAATTATAAATTTT
1 TAAAATTAAAATATAAATTTT
7765082 TAAAAGTTAAAATAT-AATTTT
1 TAAAA-TTAAAATATAAATTTT
7765103 ATTATATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (21 bp):
TAAAATTAAAATATAAATTTT
Found at i:7765940 original size:26 final size:25
Alignment explanation
Indices: 7765908--7765977 Score: 115
Period size: 25 Copynumber: 2.8 Consensus size: 25
7765898 AAGCCCTCCC
7765908 AAAAAAAAAACCTAACCCCAAAAAA
1 AAAAAAAAAACCTAACCCCAAAAAA
7765933 AAAGAAAAAAACCTAA-CCCAAAAAA
1 AAA-AAAAAAACCTAACCCCAAAAAA
7765958 AAAAAGAAAAACCTAACCCC
1 AAAAA-AAAAACCTAACCCC
7765978 CCCAAAAAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
24 2 0.05
25 25 0.60
26 15 0.36
ACGTcount: A:0.69, C:0.24, G:0.03, T:0.04
Consensus pattern (25 bp):
AAAAAAAAAACCTAACCCCAAAAAA
Found at i:7765984 original size:26 final size:25
Alignment explanation
Indices: 7765908--7765988 Score: 94
Period size: 25 Copynumber: 3.2 Consensus size: 25
7765898 AAGCCCTCCC
7765908 AAAAA-AAAAACCTAA-CCCCAAAA
1 AAAAAGAAAAACCTAACCCCCAAAA
**
7765931 AAAAAGAAAAAAACCTAACCCAAAAAA
1 AAAAAG--AAAAACCTAACCCCCAAAA
**
7765958 AAAAAGAAAAACCTAACCCCCCCAA
1 AAAAAGAAAAACCTAACCCCCAAAA
7765983 AAAAAG
1 AAAAAG
7765989 CCAAGAAACC
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
23 5 0.10
25 21 0.44
26 10 0.21
27 12 0.25
ACGTcount: A:0.68, C:0.25, G:0.04, T:0.04
Consensus pattern (25 bp):
AAAAAGAAAAACCTAACCCCCAAAA
Found at i:7766247 original size:13 final size:13
Alignment explanation
Indices: 7766229--7766253 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7766219 ATTTTACTCT
7766229 TTTTTTATTTTTA
1 TTTTTTATTTTTA
7766242 TTTTTTATTTTT
1 TTTTTTATTTTT
7766254 TTTCCTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:7766601 original size:24 final size:24
Alignment explanation
Indices: 7766546--7766601 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
7766536 AATCATGTTA
*
7766546 TATATGTAATATTGTTATCACTAT
1 TATATTTAATATTGTTATCACTAT
* *
7766570 TATTTTTATATATTGTTATTA-TAT
1 TATATTTA-ATATTGTTATCACTAT
7766594 TATATTTA
1 TATATTTA
7766602 GCTATATATA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 16 0.59
25 11 0.41
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.59
Consensus pattern (24 bp):
TATATTTAATATTGTTATCACTAT
Found at i:7767195 original size:16 final size:15
Alignment explanation
Indices: 7767171--7767205 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
7767161 TAATTATTAT
7767171 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
7767187 TATTTTAATATTTTA
1 TATTCTAATATTTTA
7767202 TATT
1 TATT
7767206 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:7767262 original size:21 final size:21
Alignment explanation
Indices: 7767224--7767267 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 21
7767214 CACTATTCGC
7767224 ATTTTTTACAATAACATTCTTAG
1 ATTTTTTAC-ATAACATT-TTAG
*
7767247 ATTTTTTAC-TATCATTTTAG
1 ATTTTTTACATAACATTTTAG
7767267 A
1 A
7767268 AACTTTTTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 5 0.25
21 6 0.30
23 9 0.45
ACGTcount: A:0.32, C:0.11, G:0.05, T:0.52
Consensus pattern (21 bp):
ATTTTTTACATAACATTTTAG
Found at i:7779135 original size:74 final size:74
Alignment explanation
Indices: 7779033--7779528 Score: 711
Period size: 74 Copynumber: 6.7 Consensus size: 74
7779023 TGATGTTTTT
* *
7779033 ATTTCTG-TTTCAAAAAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACACGTTG
1 ATTTCTGTTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
*
7779097 AGGGAATTTCA
64 AGGTAATTTCA
* *
7779108 ATTTCTGTTGTCAAAAAAATCAACTCATACTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
1 ATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
7779173 GTAATTTCA
66 GTAATTTCA
**
7779182 ATTTCTGTTGTT-AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGA
1 ATTTCTGTT-TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
7779246 GGTAATTTCA
65 GGTAATTTCA
* * ** * *
7779256 ATTTCTATTTTC--AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAG
1 ATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
*
7779319 GTATTTTCA
66 GTAATTTCA
* * *
7779328 ATTTTTGTTTTTCAAAAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTG
1 ATTTCTG-TTTTC-AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTG
7779393 AGGTAATTTCA
64 AGGTAATTTCA
7779404 ATTTCTGTTTTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GAGACACGCTGA
1 ATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG-GACACGCTGA
7779466 GGTAATTTCA
65 GGTAATTTCA
* *
7779476 ATTTCTATTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 ATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG
7779529 ATCACACATG
Statistics
Matches: 385, Mismatches: 26, Indels: 21
0.89 0.06 0.05
Matches are distributed among these distances:
71 1 0.00
72 129 0.34
73 44 0.11
74 137 0.36
75 13 0.03
76 61 0.16
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.31
Consensus pattern (74 bp):
ATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAG
GTAATTTCA
Found at i:7780425 original size:24 final size:24
Alignment explanation
Indices: 7780382--7780464 Score: 105
Period size: 25 Copynumber: 3.4 Consensus size: 24
7780372 GCCCTCCAAA
7780382 AAAAAAACCTAACCCTAAAAAAAAG
1 AAAAAAACCTAACCC-AAAAAAAAG
7780407 AAAAAAACCTAACCCAAAAAAAA-
1 AAAAAAACCTAACCCAAAAAAAAG
*
7780430 AAGAAAAACCTAACCCCCAAAAAAAG
1 AA-AAAAACCTAA-CCCAAAAAAAAG
* *
7780456 CAAGAAACC
1 AAAAAAACC
7780465 CTAGCCACCT
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
23 2 0.04
24 18 0.35
25 31 0.60
26 1 0.02
ACGTcount: A:0.66, C:0.24, G:0.05, T:0.05
Consensus pattern (24 bp):
AAAAAAACCTAACCCAAAAAAAAG
Found at i:7780467 original size:26 final size:25
Alignment explanation
Indices: 7780385--7780467 Score: 89
Period size: 26 Copynumber: 3.3 Consensus size: 25
7780375 CTCCAAAAAA
** *
7780385 AAAACCTAACCCTAAAAAAAAGAAA
1 AAAACCTAACCCCCAAAAAAAGAAG
*
7780410 AAAACCTAA--CCCAAAAAAAAAAG
1 AAAACCTAACCCCCAAAAAAAGAAG
7780433 AAAAACCTAACCCCCAAAAAAAGCAAG
1 -AAAACCTAACCCCCAAAAAAAG-AAG
*
7780460 AAACCCTA
1 AAAACCTA
7780468 GCCACCTAGC
Statistics
Matches: 48, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
23 10 0.21
24 9 0.19
25 9 0.19
26 17 0.35
27 3 0.06
ACGTcount: A:0.64, C:0.25, G:0.05, T:0.06
Consensus pattern (25 bp):
AAAACCTAACCCCCAAAAAAAGAAG
Found at i:7780713 original size:13 final size:13
Alignment explanation
Indices: 7780695--7780719 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7780685 ATTTTACTCT
7780695 TTTTTTATTTTTA
1 TTTTTTATTTTTA
7780708 TTTTTTATTTTT
1 TTTTTTATTTTT
7780720 TTTCCTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:7783456 original size:36 final size:35
Alignment explanation
Indices: 7783399--7783475 Score: 102
Period size: 36 Copynumber: 2.2 Consensus size: 35
7783389 AAGAAAATAT
*
7783399 ATTTTGTTTAACTAGAGTTGCAAGTAA-CTTCTTAA
1 ATTTTGTTTAACTAGACTTGCAAGTAATC-TCTTAA
*
7783434 ATTTTGTTTTAACTTGACTTGCAAGTAATCTCTTAA
1 ATTTTG-TTTAACTAGACTTGCAAGTAATCTCTTAA
*
7783470 AATTTG
1 ATTTTG
7783476 AATTACACAA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
35 6 0.16
36 30 0.81
37 1 0.03
ACGTcount: A:0.30, C:0.12, G:0.13, T:0.45
Consensus pattern (35 bp):
ATTTTGTTTAACTAGACTTGCAAGTAATCTCTTAA
Found at i:7783682 original size:29 final size:29
Alignment explanation
Indices: 7783644--7783699 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
7783634 TTTTTAGTTC
*
7783644 TTAAAATTTAAAATTATTATTATTATCTT
1 TTAAAATTTAAAATTACTATTATTATCTT
* *
7783673 TTAAATTTTAAAATTGCTATTATTATC
1 TTAAAATTTAAAATTACTATTATTATC
7783700 GTAATAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (29 bp):
TTAAAATTTAAAATTACTATTATTATCTT
Found at i:7784020 original size:22 final size:22
Alignment explanation
Indices: 7783973--7784022 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
7783963 AATTGATTAT
**
7783973 AATATAATATATTATTAGTATA
1 AATATAATATATTATTAAAATA
*
7783995 AATATAATATTATT-TTAAAATC
1 AATATAATA-TATTATTAAAATA
7784017 AATATA
1 AATATA
7784023 CGGGTATAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 20 0.83
23 4 0.17
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (22 bp):
AATATAATATATTATTAAAATA
Found at i:7784579 original size:25 final size:25
Alignment explanation
Indices: 7784551--7784599 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
7784541 ATTACGTGTT
7784551 TTAAATCAGA-TATAATTAATATTTA
1 TTAAATCA-ATTATAATTAATATTTA
*
7784576 TTAAATTAATTATAATTAATATTT
1 TTAAATCAATTATAATTAATATTT
7784600 TAAAATTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 1 0.05
25 21 0.95
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (25 bp):
TTAAATCAATTATAATTAATATTTA
Found at i:7801589 original size:31 final size:32
Alignment explanation
Indices: 7801553--7801620 Score: 95
Period size: 31 Copynumber: 2.1 Consensus size: 32
7801543 ATTATACACG
*
7801553 TAAAATTTT-AATTATGATTTAA-ATATATATT
1 TAAAATTTTAAATT-TAATTTAATATATATATT
7801584 TAAAATTTTAAATTTAATTTAATTATATATATT
1 TAAAATTTTAAATTTAATTTAA-TATATATATT
7801617 TAAA
1 TAAA
7801621 GAATTAAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
31 16 0.48
32 4 0.12
33 13 0.39
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (32 bp):
TAAAATTTTAAATTTAATTTAATATATATATT
Found at i:7803952 original size:33 final size:33
Alignment explanation
Indices: 7803898--7803963 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
7803888 AAAATAAAGA
*
7803898 TAGATATGTATAAGCAGATTGTTTATTTTGACT
1 TAGATATGTATAAGCAAATTGTTTATTTTGACT
* *
7803931 TAGATATG-AGTAAGTAAATTGTTTCTTTTGACT
1 TAGATATGTA-TAAGCAAATTGTTTATTTTGACT
7803964 AAGTATAGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 1 0.03
33 28 0.97
ACGTcount: A:0.30, C:0.06, G:0.18, T:0.45
Consensus pattern (33 bp):
TAGATATGTATAAGCAAATTGTTTATTTTGACT
Found at i:7805074 original size:57 final size:58
Alignment explanation
Indices: 7804972--7805096 Score: 144
Period size: 57 Copynumber: 2.2 Consensus size: 58
7804962 CATTACATAA
* * * * * *
7804972 AGGATTTAGCCTGGACTGGTAATCATGATATAAGCCCTTTTGAGCATATGTTATAGAT
1 AGGATTTAGCCCGGACGGGTAATCATGATATAAGCCCTTATGAGCATATATTAGAAAT
* ** * *
7805030 AGGATTTAGCCCGGACGGGTAGTTTTGAT-TAAGCTCTTATGAGCATATATTGGAAAT
1 AGGATTTAGCCCGGACGGGTAATCATGATATAAGCCCTTATGAGCATATATTAGAAAT
7805087 AGGATTTAGC
1 AGGATTTAGC
7805097 TTGGACAAGT
Statistics
Matches: 56, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
57 32 0.57
58 24 0.43
ACGTcount: A:0.29, C:0.13, G:0.25, T:0.34
Consensus pattern (58 bp):
AGGATTTAGCCCGGACGGGTAATCATGATATAAGCCCTTATGAGCATATATTAGAAAT
Found at i:7813329 original size:42 final size:42
Alignment explanation
Indices: 7813234--7813332 Score: 126
Period size: 42 Copynumber: 2.4 Consensus size: 42
7813224 CAGGGGCGTT
* * *
7813234 TGTCTCAACCATGTGTGCTACACGGCCTAGAACACGGGTATG
1 TGTCTCAGCCGTGTGTGCTACACGGCCTAGAACACGGGCATG
* * *
7813276 TGTCTCAGCCGTGTGTGCTACACGGCTTTGAACACGGGCGTG
1 TGTCTCAGCCGTGTGTGCTACACGGCCTAGAACACGGGCATG
**
7813318 TGTCTTGGCCGTGTG
1 TGTCTCAGCCGTGTG
7813333 AACCCTGCAC
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.16, C:0.25, G:0.31, T:0.27
Consensus pattern (42 bp):
TGTCTCAGCCGTGTGTGCTACACGGCCTAGAACACGGGCATG
Found at i:7818712 original size:8 final size:8
Alignment explanation
Indices: 7818698--7818731 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
7818688 CGATACCAAC
7818698 TTTTAAAA
1 TTTTAAAA
*
7818706 CTTTAAAA
1 TTTTAAAA
*
7818714 TTTTGAAA
1 TTTTAAAA
7818722 TTTTAAAA
1 TTTTAAAA
7818730 TT
1 TT
7818732 CAATCTTTTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (8 bp):
TTTTAAAA
Found at i:7821203 original size:93 final size:93
Alignment explanation
Indices: 7821094--7821264 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
7821084 CCCATAAGTG
* *
7821094 AACTCGAACTCAACTCAATGAGCTCGGGA-GTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 AACTCGAACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
7821158 CGAGCTCGGATGCCTAGTTACATCTCTCA
65 CCAGCTCGGATGCCTAGTTACATCTCTCA
* * *
7821187 AACTCGGACTCAACTCAACGAGTTCGGACATTCGCATTCATAAGTGAACTCGGACTCAACTCAAC
1 AACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
7821252 CAGTTCGGATGCC
66 CAGCTCGGATGCC
7821265 CAAATATCCT
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 3 0.04
93 67 0.96
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
AACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
CAGCTCGGATGCCTAGTTACATCTCTCA
Found at i:7821257 original size:46 final size:45
Alignment explanation
Indices: 7821086--7821260 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 45
7821076 GTAACCCGCC
* * * *
7821086 CATAAGTGAACTCGAACTCAACTCAATGAGCTCGGGAGTTCGCATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTC-GGAATTCGCATT
*
7821132 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGG-ATGC-CTAGTT
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAATTCGC-A-TT
*** * *
7821177 ACATCTCTCAAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATT
1 -CATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGA-ATTCGCATT
* *
7821225 CATAAGTGAACTCGGACTCAACTCAACCAGTTCGGA
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
7821261 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 3 0.03
46 62 0.58
47 30 0.28
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (45 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGAATTCGCATT
Found at i:7821279 original size:46 final size:46
Alignment explanation
Indices: 7821129--7821279 Score: 116
Period size: 46 Copynumber: 3.2 Consensus size: 46
7821119 GGGAGTTCGC
* * *
7821129 ATCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTAC
1 ATCC-TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---AT
* * *
7821179 ATCTCTCA---AACTCGGACTCAACTCAACGAGTTCGGACATTCGC-AT
1 ATC-CTAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCCAAT
* *
7821224 -TCATAAGTGAACTCGGACTCAACTCAACCAGTTCGGATGCCCAAAT
1 ATCCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AAT
7821270 ATCCT-AGTGA
1 ATCCTAAGTGA
7821280 CATGTCACTT
Statistics
Matches: 80, Mismatches: 12, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
43 2 0.03
44 6 0.08
45 1 0.01
46 33 0.41
47 29 0.36
49 3 0.04
50 5 0.06
51 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.23
Consensus pattern (46 bp):
ATCCTAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAT
Found at i:7823646 original size:30 final size:30
Alignment explanation
Indices: 7823602--7823690 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 30
7823592 CAAAGATAAC
7823602 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
7823631 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * * *
7823661 AAGAGATCCAGGATAGAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
7823691 CGATACTATG
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
29 9 0.18
30 38 0.78
31 2 0.04
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:7823650 original size:15 final size:15
Alignment explanation
Indices: 7823602--7823681 Score: 83
Period size: 15 Copynumber: 5.4 Consensus size: 15
7823592 CAAAGATAAC
*
7823602 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
7823616 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
7823631 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
7823646 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
7823661 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
*
7823676 GAGAAA
1 AAGAAA
7823682 CCCAAGATAC
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
14 9 0.17
15 44 0.81
16 1 0.02
ACGTcount: A:0.57, C:0.14, G:0.19, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:7823690 original size:15 final size:15
Alignment explanation
Indices: 7823613--7823690 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
7823603 AGAAAACCGA
7823613 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
7823628 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
7823642 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
7823657 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
* *
7823673 ATAGAGAAACCCAAG
1 ATAAAGAAATCCAAG
7823688 ATA
1 ATA
7823691 CGATACTATG
Statistics
Matches: 51, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
14 4 0.08
15 44 0.86
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:7826781 original size:46 final size:45
Alignment explanation
Indices: 7826631--7826804 Score: 183
Period size: 45 Copynumber: 3.8 Consensus size: 45
7826621 TGTAACCCGC
* *
7826631 CCATAAGTGAACTCGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
7826676 CCATAAGTGAACTCGACTCAACTCAACGAACTC-GA-ATGC-CTAGTT
1 CCATAAGTGAACTCGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
7826721 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTC-GACTCAACTCAACGAGCTCGGACATTCGCAT
*
7826768 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTC-GACTCAACTCAACGAGCTCGGA
7826805 TGCCCAAATA
Statistics
Matches: 106, Mismatches: 15, Indels: 15
0.78 0.11 0.11
Matches are distributed among these distances:
42 1 0.01
43 3 0.03
44 1 0.01
45 37 0.35
46 35 0.33
47 22 0.21
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.19, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:7830322 original size:46 final size:46
Alignment explanation
Indices: 7830255--7830429 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 46
7830245 TGTAACCTGC
7830255 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* * *
7830301 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTGGAATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG---G-C--GTTCGCAT
* * * *
7830351 -C-TCA-CGAACTCGGACTCAACTCAACGAGCTTGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
* *
7830394 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGG
7830430 ATGCCCAAAT
Statistics
Matches: 106, Mismatches: 12, Indels: 22
0.76 0.09 0.16
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 5 0.05
46 56 0.53
47 23 0.22
48 7 0.07
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
Found at i:7830370 original size:93 final size:93
Alignment explanation
Indices: 7830262--7830434 Score: 303
Period size: 93 Copynumber: 1.9 Consensus size: 93
7830252 TGCCCATAAG
* *
7830262 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
7830327 ACGAGTT-GGAATGCCTAGTTACATCTCA
66 ACGAGTTCGG-ATGCCTAGTTACATCTCA
*
7830355 CGAACTCGGACTCAACTCAACGAGCTTGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
7830420 ACGAGTTCGGATGCC
66 ACGAGTTCGGATGCC
7830435 CAAATATCTG
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
93 74 0.97
94 2 0.03
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:7832109 original size:18 final size:18
Alignment explanation
Indices: 7832086--7832124 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
7832076 TGTTCTTTAG
7832086 TATTCACGCATCAATTGT
1 TATTCACGCATCAATTGT
*
7832104 TATTCATGCATCAATTGT
1 TATTCACGCATCAATTGT
7832122 TAT
1 TAT
7832125 AATTACAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.28, C:0.18, G:0.10, T:0.44
Consensus pattern (18 bp):
TATTCACGCATCAATTGT
Found at i:7834171 original size:46 final size:46
Alignment explanation
Indices: 7834102--7834193 Score: 157
Period size: 46 Copynumber: 2.0 Consensus size: 46
7834092 TAAGGTCATT
7834102 TCCTAGCTCTATTTCTCACCCAAACTTAATCATTTTCCTACATAAA
1 TCCTAGCTCTATTTCTCACCCAAACTTAATCATTTTCCTACATAAA
* * *
7834148 TCCTAGCTCTATTTCTCATCCAAACTTATTCATTTTCCTGCATAAA
1 TCCTAGCTCTATTTCTCACCCAAACTTAATCATTTTCCTACATAAA
7834194 AACTTACATA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 43 1.00
ACGTcount: A:0.28, C:0.29, G:0.03, T:0.39
Consensus pattern (46 bp):
TCCTAGCTCTATTTCTCACCCAAACTTAATCATTTTCCTACATAAA
Found at i:7834953 original size:65 final size:66
Alignment explanation
Indices: 7834848--7834987 Score: 158
Period size: 65 Copynumber: 2.1 Consensus size: 66
7834838 GTGCACATTC
*** *
7834848 CCTTTTCAAGTGGTACACACGAAGTGTACATACCCTTTTCAATTTGTACACACAAAGTGTACATA
1 CCTTTTCAAGTGGTACACACGAAGTGTACATACCCTTTTCAAGCCGTACACACAAAGTATACATA
7834913 A
66 A
* * ** *
7834914 CCTTTTCAAGT-GTACACA-TATAGTGTACTTTTCCTTTTCAAGCCGTATACACAAAGTATACAT
1 CCTTTTCAAGTGGTACACACGA-AGTGTACATACCCTTTTCAAGCCGTACACACAAAGTATACAT
**
7834977 TT
65 AA
7834979 CCTTTTCAA
1 CCTTTTCAA
7834988 TACCACCTGT
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
64 1 0.02
65 50 0.81
66 11 0.18
ACGTcount: A:0.31, C:0.23, G:0.11, T:0.35
Consensus pattern (66 bp):
CCTTTTCAAGTGGTACACACGAAGTGTACATACCCTTTTCAAGCCGTACACACAAAGTATACATA
A
Found at i:7834985 original size:33 final size:33
Alignment explanation
Indices: 7834817--7834987 Score: 155
Period size: 33 Copynumber: 5.2 Consensus size: 33
7834807 GGACCTTTCA
* * * * *
7834817 TTTTCTAGTTGTACACCCGAGGTGCACATTCCC
1 TTTTCAAGTTGTACACACAAAGTGTACATTCCC
* * *
7834850 TTTTCAAGTGGTACACACGAAGTGTACATACCC
1 TTTTCAAGTTGTACACACAAAGTGTACATTCCC
* **
7834883 TTTTCAATTTGTACACACAAAGTGTACATAACC
1 TTTTCAAGTTGTACACACAAAGTGTACATTCCC
* * * *
7834916 TTTTCAAG-TGTACACATATAGTGTACTTTTCC
1 TTTTCAAGTTGTACACACAAAGTGTACATTCCC
** * * *
7834948 TTTTCAAGCCGTATACACAAAGTATACATTTCC
1 TTTTCAAGTTGTACACACAAAGTGTACATTCCC
7834981 TTTTCAA
1 TTTTCAA
7834988 TACCACCTGT
Statistics
Matches: 115, Mismatches: 22, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
32 27 0.23
33 88 0.77
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (33 bp):
TTTTCAAGTTGTACACACAAAGTGTACATTCCC
Found at i:7835758 original size:123 final size:124
Alignment explanation
Indices: 7835459--7835777 Score: 412
Period size: 123 Copynumber: 2.5 Consensus size: 124
7835449 GTCCAACGAA
**
7835459 AAATCGAAACCCAGCACGGTAGGGCACGATTCCTCGAA-TTCCAAAACATTGAACATTGCCTTGT
1 AAATCGAAACCCAGCACGGTAGGGCACGATTCC-CGAATTTCC-AAACATCAAACATTGCCTTGT
* * * * *
7835523 TTTAGAATTTAAAGAATACGAATGAAATTCTAAAAGAATGTTTGATGATTTTGGATAAGCGG
64 TTTAGAATTTAAAGAATAC-AATGAAATTCTAAAAGAAGGTTCGATGATTTTGAACAAACGG
* * * *
7835585 AAATCGAAATCCAGCACGATAGGGCACGGTTCCCCGAATTTCCAAGCATCAAACATTGCCTTGTT
1 AAATCGAAACCCAGCACGGTAGGGCACGATT-CCCGAATTTCCAAACATCAAACATTGCCTTGTT
* * *
7835650 TTAGAATTTTAAA-AA-A-AGTGAAATTCTAAAGGAAGGTTCGATTATTTTGAACAAACGGG
65 TTAGAA-TTTAAAGAATACAATGAAATTCTAAAAGAAGGTTCGATGATTTTGAACAAAC-GG
*
7835709 AAATCGAAACCCAGCACGGTAGGGCACGATTCCCGAATTTCCAAACATCAAACATTACCTTCGTT
1 AAATCGAAACCCAGCACGGTAGGGCACGATTCCCGAATTTCCAAACATCAAACATTGCCTT-GTT
7835774 TTAG
65 TTAG
7835778 GGAATTTTTA
Statistics
Matches: 169, Mismatches: 19, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
123 60 0.36
124 37 0.22
125 1 0.01
126 59 0.35
127 12 0.07
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (124 bp):
AAATCGAAACCCAGCACGGTAGGGCACGATTCCCGAATTTCCAAACATCAAACATTGCCTTGTTT
TAGAATTTAAAGAATACAATGAAATTCTAAAAGAAGGTTCGATGATTTTGAACAAACGG
Found at i:7837437 original size:24 final size:24
Alignment explanation
Indices: 7837392--7837437 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
7837382 AAGAAATAAT
* *
7837392 AATAAATAAAGTATATGAAAAATG
1 AATAAATAAAGTAAATAAAAAATG
7837416 AATAAATAAA-TAAATAATAAAA
1 AATAAATAAAGTAAATAA-AAAA
7837438 GGATTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.70, C:0.00, G:0.07, T:0.24
Consensus pattern (24 bp):
AATAAATAAAGTAAATAAAAAATG
Found at i:7838919 original size:31 final size:31
Alignment explanation
Indices: 7838881--7838942 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
7838871 TCACCTGTCC
*
7838881 AATCGAAAATCAATATTCAAACGGATTCATG
1 AATCGAAAATCAATATTCAAACGAATTCATG
7838912 AATCGAAAATCAATATTCAAACGAATTCATG
1 AATCGAAAATCAATATTCAAACGAATTCATG
7838943 TAATATTTCA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.26
Consensus pattern (31 bp):
AATCGAAAATCAATATTCAAACGAATTCATG
Found at i:7844537 original size:27 final size:27
Alignment explanation
Indices: 7844507--7844558 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
7844497 GTATTATGGT
* * *
7844507 ACTAAGATTTTGCAACTAATATAGTTA
1 ACTAAAATTTTACAACCAATATAGTTA
7844534 ACTAAAATTTTACAACCAATATAGT
1 ACTAAAATTTTACAACCAATATAGT
7844559 CACCATAATG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.35
Consensus pattern (27 bp):
ACTAAAATTTTACAACCAATATAGTTA
Found at i:7844853 original size:29 final size:29
Alignment explanation
Indices: 7844810--7844877 Score: 82
Period size: 29 Copynumber: 2.3 Consensus size: 29
7844800 ATTATTGACT
** * *
7844810 TTTCTGAAACGACACTTAGTGTTATAATC
1 TTTCTGAAATAACACTTAGTATTACAATC
*
7844839 TTTCTGAAATAACACTTAGTATTACAATT
1 TTTCTGAAATAACACTTAGTATTACAATC
*
7844868 TTTTTGAAAT
1 TTTCTGAAAT
7844878 GACATTTTGT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.43
Consensus pattern (29 bp):
TTTCTGAAATAACACTTAGTATTACAATC
Found at i:7846132 original size:31 final size:32
Alignment explanation
Indices: 7846094--7846162 Score: 95
Period size: 32 Copynumber: 2.2 Consensus size: 32
7846084 TTAAAAAATC
* *
7846094 AATTTAATTTTT-TTAAAAAAATTGATAATTT
1 AATTTAATTTTTGTTAAAAAAATTAATAATTA
* *
7846125 AATTTAATTTTTGTTAAAAGAATTAATGATTA
1 AATTTAATTTTTGTTAAAAAAATTAATAATTA
7846157 AATTTA
1 AATTTA
7846163 GGTGTAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
31 12 0.36
32 21 0.64
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (32 bp):
AATTTAATTTTTGTTAAAAAAATTAATAATTA
Found at i:7848154 original size:24 final size:24
Alignment explanation
Indices: 7848101--7848148 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
7848091 AATGTGAGGT
*
7848101 ATTTGGGGAGAATGATTTTTAACA
1 ATTTGGGGAGAATGATTTGTAACA
* *
7848125 ATTTGGGGAGAGTGGTTTGTAACA
1 ATTTGGGGAGAATGATTTGTAACA
7848149 TATTGGCTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.29, C:0.04, G:0.31, T:0.35
Consensus pattern (24 bp):
ATTTGGGGAGAATGATTTGTAACA
Found at i:7850124 original size:14 final size:14
Alignment explanation
Indices: 7850105--7850133 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
7850095 AAAACATATG
7850105 TACATAACCCTAGC
1 TACATAACCCTAGC
7850119 TACATAACCCTAGC
1 TACATAACCCTAGC
7850133 T
1 T
7850134 CTAGGCTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.34, G:0.07, T:0.24
Consensus pattern (14 bp):
TACATAACCCTAGC
Found at i:7850492 original size:2 final size:2
Alignment explanation
Indices: 7850485--7850516 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
7850475 ATCGGTATAT
7850485 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7850517 AGCTCCTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:7859724 original size:17 final size:17
Alignment explanation
Indices: 7859702--7859735 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7859692 ATCCACTAAT
*
7859702 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
7859719 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
7859736 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:7864354 original size:17 final size:17
Alignment explanation
Indices: 7864332--7864365 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
7864322 ATCCACTAAT
*
7864332 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
7864349 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
7864366 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:7864879 original size:12 final size:12
Alignment explanation
Indices: 7864862--7864893 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
7864852 GGGCCCGCCC
7864862 ATATTAATTTTT
1 ATATTAATTTTT
7864874 ATATT-ATTTTT
1 ATATTAATTTTT
7864885 ATA-TAATTT
1 ATATTAATTT
7864894 AAAATATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
10 1 0.05
11 13 0.68
12 5 0.26
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (12 bp):
ATATTAATTTTT
Found at i:7871385 original size:17 final size:17
Alignment explanation
Indices: 7871363--7871395 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
7871353 TTTTTTATAA
7871363 AAAAAACAT-AAATAATT
1 AAAAAA-ATCAAATAATT
7871380 AAAAAAATCAAATAAT
1 AAAAAAATCAAATAAT
7871396 AGAGAAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.73, C:0.06, G:0.00, T:0.21
Consensus pattern (17 bp):
AAAAAAATCAAATAATT
Found at i:7872041 original size:103 final size:103
Alignment explanation
Indices: 7871876--7872078 Score: 223
Period size: 103 Copynumber: 2.0 Consensus size: 103
7871866 TGTACGGGTG
* * * * * *
7871876 TATAATAATAATTTTATATCTTTAAAATTTAATGATGTGATAAAATGTTATTGATGCTTAAAAGC
1 TATAATAATAATTTTATATCTTTAAAATTGAATAATGTGATAAAATGTTATAGATACCTAAAAAC
*
7871941 CATAG-TTTTTAGGATCATCCTAATATAAATTATTCTTA
66 CAT-GCTTTTTAGAATCATCCTAATATAAATTATTCTTA
* * * *
7871979 TATAATAAT-ATTTTGCTATCTTTAAAATTGGATAATGTGATAATATTTTAATAG-TACCTAAAA
1 TATAATAATAATTTT-ATATCTTTAAAATTGAATAATGTGATAAAATGTT-ATAGATACCTAAAA
* * * *
7872042 ACTATGCTTTTTAGAATTATCCTGATATAAGTTATTC
64 ACCATGCTTTTTAGAATCATCCTAATATAAATTATTC
7872079 CCATATTTAA
Statistics
Matches: 82, Mismatches: 15, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
102 6 0.07
103 73 0.89
104 3 0.04
ACGTcount: A:0.38, C:0.08, G:0.10, T:0.44
Consensus pattern (103 bp):
TATAATAATAATTTTATATCTTTAAAATTGAATAATGTGATAAAATGTTATAGATACCTAAAAAC
CATGCTTTTTAGAATCATCCTAATATAAATTATTCTTA
Found at i:7887680 original size:17 final size:17
Alignment explanation
Indices: 7887654--7887687 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7887644 AATTTAATTT
*
7887654 ATATATTTTAATTTTTA
1 ATATAATTTAATTTTTA
*
7887671 ATATAATTTAGTTTTTA
1 ATATAATTTAATTTTTA
7887688 GTTTTTTATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (17 bp):
ATATAATTTAATTTTTA
Found at i:7897202 original size:12 final size:12
Alignment explanation
Indices: 7897185--7897214 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7897175 AATGATCTTG
7897185 GGTAAAAATATC
1 GGTAAAAATATC
7897197 GGTAAAAATATC
1 GGTAAAAATATC
*
7897209 GATAAA
1 GGTAAA
7897215 GAGAATGGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.53, C:0.07, G:0.17, T:0.23
Consensus pattern (12 bp):
GGTAAAAATATC
Found at i:7907798 original size:22 final size:24
Alignment explanation
Indices: 7907773--7907819 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
7907763 CAACCAATCC
7907773 AATTCA-ACATATTTTA-AAGATA
1 AATTCATACATATTTTATAAGATA
* *
7907795 AATTCATGCATTTTTTATAAGATA
1 AATTCATACATATTTTATAAGATA
7907819 A
1 A
7907820 CCTCATCACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 6 0.29
23 8 0.38
24 7 0.33
ACGTcount: A:0.45, C:0.09, G:0.06, T:0.40
Consensus pattern (24 bp):
AATTCATACATATTTTATAAGATA
Found at i:7914138 original size:11 final size:11
Alignment explanation
Indices: 7914122--7914164 Score: 61
Period size: 11 Copynumber: 3.8 Consensus size: 11
7914112 CTATTTTCTA
7914122 AATAAAATATT
1 AATAAAATATT
7914133 AAT-AAATATCT
1 AATAAAATAT-T
7914144 AAGTAAAATATT
1 AA-TAAAATATT
7914156 AATAAAATA
1 AATAAAATA
7914165 ATATTTAACT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
10 6 0.21
11 13 0.45
12 4 0.14
13 6 0.21
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (11 bp):
AATAAAATATT
Found at i:7914150 original size:23 final size:23
Alignment explanation
Indices: 7914118--7914161 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
7914108 ACCACTATTT
7914118 TCTAAATAAAATATTAATAAATA
1 TCTAAATAAAATATTAATAAATA
*
7914141 TCTAAGTAAAATATTAATAAA
1 TCTAAATAAAATATTAATAAA
7914162 ATAATATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (23 bp):
TCTAAATAAAATATTAATAAATA
Found at i:7915057 original size:20 final size:20
Alignment explanation
Indices: 7915032--7915072 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
7915022 CACCTTGTTT
7915032 CACTAAAG-TTTCTATACGCC
1 CACTAAAGCTTT-TATACGCC
*
7915052 CACTAAAGCTTTTATATGCC
1 CACTAAAGCTTTTATACGCC
7915072 C
1 C
7915073 CGTTTCACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.32
Consensus pattern (20 bp):
CACTAAAGCTTTTATACGCC
Found at i:7918097 original size:4 final size:4
Alignment explanation
Indices: 7918088--7918117 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
7918078 CTTTTTTATG
7918088 TTTA TTTA TTTA TTTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA -TTTA TTTA TTTA TTTA T
7918118 CATTAACTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:7918106 original size:13 final size:13
Alignment explanation
Indices: 7918082--7918115 Score: 59
Period size: 13 Copynumber: 2.5 Consensus size: 13
7918072 TATTGACTTT
7918082 TTTATGTTTATTTA
1 TTTAT-TTTATTTA
7918096 TTTATTTTATTTA
1 TTTATTTTATTTA
7918109 TTTATTT
1 TTTATTT
7918116 ATCATTAACT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 15 0.75
14 5 0.25
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:7918177 original size:21 final size:22
Alignment explanation
Indices: 7918148--7918190 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
7918138 GAATATTTTA
*
7918148 TTAATATATATTTTTTAAAATT
1 TTAATATATATATTTTAAAATT
*
7918170 TTAA-ATATATATTTTGAAATT
1 TTAATATATATATTTTAAAATT
7918191 ACTTTTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (22 bp):
TTAATATATATATTTTAAAATT
Found at i:7918205 original size:22 final size:22
Alignment explanation
Indices: 7918180--7918239 Score: 72
Period size: 22 Copynumber: 2.8 Consensus size: 22
7918170 TTAAATATAT
*
7918180 ATTTTGAA-ATTACTTTTTTAAA
1 ATTTTAAATATTA-TTTTTTAAA
7918202 ATTTTAAATATTATTTTTT-AA
1 ATTTTAAATATTATTTTTTAAA
*
7918223 ATATTAAATA-TATTTTT
1 ATTTTAAATATTATTTTT
7918240 AATAATATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.20
21 11 0.31
22 13 0.37
23 4 0.11
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (22 bp):
ATTTTAAATATTATTTTTTAAA
Found at i:7918256 original size:19 final size:20
Alignment explanation
Indices: 7918194--7918254 Score: 77
Period size: 21 Copynumber: 3.0 Consensus size: 20
7918184 TGAAATTACT
*
7918194 TTTTTAAAATTTTAAATATTA
1 TTTTTAAAATATTAAATA-TA
*
7918215 TTTTTTAAATATTAAATATA
1 TTTTTAAAATATTAAATATA
*
7918235 TTTTTAATAATATAAAATAT
1 TTTTTAA-AATATTAAATAT
7918255 TTAAATATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.23
21 27 0.77
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (20 bp):
TTTTTAAAATATTAAATATA
Found at i:7918261 original size:18 final size:19
Alignment explanation
Indices: 7918217--7918261 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
7918207 AAATATTATT
7918217 TTTTAAAT-ATTAAATATA
1 TTTTAAATAATTAAATATA
*
7918235 TTTTTAATAATATAAA-ATA
1 TTTTAAATAAT-TAAATATA
7918254 -TTTAAATA
1 TTTTAAATA
7918262 TTTTAAACTT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 14 0.61
19 5 0.22
20 4 0.17
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
TTTTAAATAATTAAATATA
Found at i:7918867 original size:21 final size:21
Alignment explanation
Indices: 7918842--7918938 Score: 93
Period size: 21 Copynumber: 5.0 Consensus size: 21
7918832 TTTTATATTA
7918842 TTAAAAATATATATTTAATAT
1 TTAAAAATATATATTTAATAT
*
7918863 TTAAAAATA-ATATTTAAAAT
1 TTAAAAATATATATTTAATAT
*
7918883 TT-AAAA-A-A-A-GTAAT-T
1 TTAAAAATATATATTTAATAT
*
7918898 TT-AAAATATATATTTAAAAT
1 TTAAAAATATATATTTAATAT
*
7918918 TTAGAAATATATATATTAATA
1 TTAAAAATATATAT-TTAATA
7918939 ATATATTCTA
Statistics
Matches: 62, Mismatches: 7, Indels: 13
0.76 0.09 0.16
Matches are distributed among these distances:
15 7 0.11
16 4 0.06
17 2 0.03
18 3 0.05
19 7 0.11
20 15 0.24
21 19 0.31
22 5 0.08
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (21 bp):
TTAAAAATATATATTTAATAT
Found at i:7918868 original size:20 final size:20
Alignment explanation
Indices: 7918840--7918938 Score: 93
Period size: 20 Copynumber: 5.1 Consensus size: 20
7918830 ATTTTTATAT
*
7918840 TATTAAAAATATATATTTAA
1 TATTTAAAATATATATTTAA
7918860 TATTTAAAA-ATAATATTTAA
1 TATTTAAAATAT-ATATTTAA
* *
7918880 AATTTAAAA-A-A-A-GTAA
1 TATTTAAAATATATATTTAA
7918896 T-TTTAAAATATATATTTAA
1 TATTTAAAATATATATTTAA
*
7918915 AATTTAGAAATATATATATTAA
1 TATTTA-AAATATATAT-TTAA
7918937 TA
1 TA
7918939 ATATATTCTA
Statistics
Matches: 64, Mismatches: 7, Indels: 14
0.75 0.08 0.16
Matches are distributed among these distances:
15 7 0.11
16 4 0.06
17 2 0.03
18 2 0.03
19 5 0.08
20 29 0.45
21 10 0.16
22 5 0.08
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (20 bp):
TATTTAAAATATATATTTAA
Found at i:7918873 original size:13 final size:13
Alignment explanation
Indices: 7918857--7918881 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7918847 AATATATATT
7918857 TAATATTTAAAAA
1 TAATATTTAAAAA
7918870 TAATATTTAAAA
1 TAATATTTAAAA
7918882 TTTAAAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TAATATTTAAAAA
Found at i:7929638 original size:10 final size:10
Alignment explanation
Indices: 7929623--7929682 Score: 54
Period size: 10 Copynumber: 6.2 Consensus size: 10
7929613 TGCACATAGT
7929623 ATATATATAC
1 ATATATATAC
7929633 ATATATAT--
1 ATATATATAC
7929641 ATATATATA-
1 ATATATATAC
* *
7929650 AAATGTATAC
1 ATATATATAC
*
7929660 ATAATATATAA
1 AT-ATATATAC
*
7929671 AAATATATAC
1 ATATATATAC
7929681 AT
1 AT
7929683 GCATATATTA
Statistics
Matches: 39, Mismatches: 8, Indels: 6
0.74 0.15 0.11
Matches are distributed among these distances:
8 8 0.21
9 7 0.18
10 17 0.44
11 7 0.18
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (10 bp):
ATATATATAC
Found at i:7929690 original size:22 final size:22
Alignment explanation
Indices: 7929616--7929682 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 22
7929606 AAAAGTATGC
* * *
7929616 ACATAGTATATAT-ATACATAT
1 ACATAATATATATAAAATATAT
* *
7929637 ATAT-ATATATATAAAATGTAT
1 ACATAATATATATAAAATATAT
7929658 ACATAATATATA-AAAATATAT
1 ACATAATATATATAAAATATAT
7929679 ACAT
1 ACAT
7929683 GCATATATTA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
20 7 0.19
21 23 0.62
22 7 0.19
ACGTcount: A:0.54, C:0.06, G:0.03, T:0.37
Consensus pattern (22 bp):
ACATAATATATATAAAATATAT
Found at i:7931794 original size:88 final size:88
Alignment explanation
Indices: 7931690--7931851 Score: 229
Period size: 88 Copynumber: 1.8 Consensus size: 88
7931680 ACCGTCTTTT
* * *
7931690 GATCTGCTTCCCTACTGCTTA-GGGTGATAAGATCTT-TAAAATTCAGCTTGTTACCCTACTGCT
1 GATCTGCTTCCCTACTGCTTATGGG-GATAAGATCTTGT-AAATTCAACCTGCTACCCTACTGCT
7931753 TAGGGGGTTAAAGCTTGTTGCCTTC
64 TAGGGGGTTAAAGCTTGTTGCCTTC
* * *
7931778 GATCTGTTTCCCTACTGCTTATGGGGTTAAGATCTTGTAAATTTAACCTGCTACCCTACTGCTTA
1 GATCTGCTTCCCTACTGCTTATGGGGATAAGATCTTGTAAATTCAACCTGCTACCCTACTGCTTA
*
7931843 GGGGTTTAA
66 GGGGGTTAA
7931852 GGTTTGGTGG
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
88 61 0.94
89 4 0.06
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (88 bp):
GATCTGCTTCCCTACTGCTTATGGGGATAAGATCTTGTAAATTCAACCTGCTACCCTACTGCTTA
GGGGGTTAAAGCTTGTTGCCTTC
Done.