Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 282 of 295
Found at i:96001946 original size:21 final size:20
Alignment explanation
Indices: 96001922--96001982 Score: 63
Period size: 20 Copynumber: 3.0 Consensus size: 20
96001912 TAATTAATTA
96001922 ATTAATTAAAATTTTATAAAT
1 ATTAATTAAAA-TTTATAAAT
*
96001943 ATTAATAAAAAATTT-TAAAT
1 ATTAAT-TAAAATTTATAAAT
*
96001963 A-TATATTAAAATCTATAAAT
1 ATTA-ATTAAAATTTATAAAT
96001983 TGGTTCAATC
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
19 8 0.24
20 13 0.38
21 9 0.26
22 4 0.12
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
ATTAATTAAAATTTATAAAT
Found at i:96001961 original size:20 final size:21
Alignment explanation
Indices: 96001922--96001973 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
96001912 TAATTAATTA
* *
96001922 ATTAATTAAAATTTTATAAAT
1 ATTAATAAAAAATTTATAAAT
96001943 ATTAATAAAAAATTT-TAAAT
1 ATTAATAAAAAATTTATAAAT
*
96001963 ATATATTAAAA
1 AT-TAATAAAA
96001974 TCTATAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 7 0.26
21 20 0.74
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
ATTAATAAAAAATTTATAAAT
Found at i:96004868 original size:25 final size:25
Alignment explanation
Indices: 96004828--96004875 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
96004818 GCACTCTCTC
*
96004828 GAGCCATGTAACAGGATGCTTATGT
1 GAGCCATGTAACAGGAAGCTTATGT
**
96004853 GAGCCATGTATTAGGAAGCTTAT
1 GAGCCATGTAACAGGAAGCTTAT
96004876 CCAGGCTAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (25 bp):
GAGCCATGTAACAGGAAGCTTATGT
Found at i:96012649 original size:12 final size:11
Alignment explanation
Indices: 96012620--96012652 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
96012610 GAAAATCTTA
96012620 TTTTA-TTTAT
1 TTTTATTTTAT
96012630 TTTTATTTTAT
1 TTTTATTTTAT
96012641 TTTTGATTTTAT
1 TTTT-ATTTTAT
96012653 ATTAAATTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 5 0.24
11 9 0.43
12 7 0.33
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (11 bp):
TTTTATTTTAT
Found at i:96014996 original size:132 final size:132
Alignment explanation
Indices: 96014781--96015261 Score: 635
Period size: 132 Copynumber: 3.7 Consensus size: 132
96014771 TCATTGAACG
* * ** * * * ** **
96014781 AACGGGAAATCGCAACCCAGCACAATAAGGCACGATTCC-CGAATTGCCAAACATCGAGTATTAC
1 AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAACATCGC
* * * *
96014845 CTTCGTTTTAAAGAGTTTTTAGAAGACATGAACGAAATTCTAAAGGGACATTCGATTACTTTGAG
66 CTTCGTTTTAAAGAATTTTTAGAAGACATGAACGAAATTTTAAAGGGATATTCGATTATTTTGAG
96014910 CA
131 CA
* * *
96014912 AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCAAATTGTCAAATATCGAACATCGC
1 AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAACATCGC
* * *
96014977 CTTCGTTTTAAAGGATTTTTAGAAGACATGAACGAAATTTTGAAGGGATATTCGATCATTTTGAG
66 CTTCGTTTTAAAGAATTTTTAGAAGACATGAACGAAATTTTAAAGGGATATTCGATTATTTTGAG
96015042 CA
131 CA
* * *
96015044 AACGAGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAACTGCCAAATATCAAACCTCGC
1 AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAACATCGC
* * ***
96015109 CTTCGTTTTAAAGAATCTTTAGGAGACATGGGTGAAATTTTGAAA-GGATATTCGATTATTTTGA
66 CTTCGTTTTAAAGAATTTTTAGAAGACATGAACGAAATTTT-AAAGGGATATTCGATTATTTTGA
96015173 GCA
130 GCA
* *
96015176 AACGCGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAGTATCAAATC-TCG
1 AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAA-CATCG
*
96015240 TCTTCGTTTTAAAGAATTTTTA
65 CCTTCGTTTTAAAGAATTTTTA
96015262 AATGAATAAT
Statistics
Matches: 308, Mismatches: 39, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
131 34 0.11
132 271 0.88
133 3 0.01
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (132 bp):
AACGAGAAATTGCAACCCAGCACGTTAGGGCACGATTCCGCGAATTGCCAAATATCAAACATCGC
CTTCGTTTTAAAGAATTTTTAGAAGACATGAACGAAATTTTAAAGGGATATTCGATTATTTTGAG
CA
Found at i:96021734 original size:17 final size:17
Alignment explanation
Indices: 96021712--96021746 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
96021702 AATTTGGTCA
*
96021712 TTTTTAATTTTTATATT
1 TTTTTAATTTTTAAATT
96021729 TTTTTAATTTTTAAATT
1 TTTTTAATTTTTAAATT
96021746 T
1 T
96021747 CAATCCTTAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (17 bp):
TTTTTAATTTTTAAATT
Found at i:96024425 original size:38 final size:38
Alignment explanation
Indices: 96024374--96024451 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
96024364 GTATATACAT
96024374 GCATTCACACCAAGCTAAATGTTGGCAATTAACTTTAA
1 GCATTCACACCAAGCTAAATGTTGGCAATTAACTTTAA
*
96024412 GCATTCACACCAAGTTAAATGTTGGCAATTAACTTTAA
1 GCATTCACACCAAGCTAAATGTTGGCAATTAACTTTAA
96024450 GC
1 GC
96024452 TTACTTCCGA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.29
Consensus pattern (38 bp):
GCATTCACACCAAGCTAAATGTTGGCAATTAACTTTAA
Found at i:96025803 original size:63 final size:62
Alignment explanation
Indices: 96025726--96025928 Score: 161
Period size: 63 Copynumber: 3.4 Consensus size: 62
96025716 CACGGTAAGA
* * *
96025726 AGTGGTGGCTGCAGTGGTTGTGGCGCTGGATGTGGAAACGTGGTGAAGAGTGGTGGTTGTGGT
1 AGTGGTTGCGGCAGTGGTTGTGGCGCTGGATGTGGAAACATGGTGAAGAGTGGTGG-TGTGGT
* * * * * * * ** *
96025789 AGTGGTTGCGGCAGTGGATGTGGGGGTGGTTGTGGAAGCATAGTG-A-A-TAGTGG-CAGCT
1 AGTGGTTGCGGCAGTGGTTGTGGCGCTGGATGTGGAAACATGGTGAAGAGTGGTGGTGTGGT
* * *
96025847 -GCGG-TGC--CGGTGGTTGTGGTGCTGGATGTGGAAACATGGTGAAGAGTGGTGGCTGTGGT
1 AGTGGTTGCGGCAGTGGTTGTGGCGCTGGATGTGGAAACATGGTGAAGAGTGGTGG-TGTGGT
* **
96025906 GGTGGTTGCGGGGGTGGTTGTGG
1 AGTGGTTGCGGCAGTGGTTGTGG
96025929 AAGCATAGTG
Statistics
Matches: 104, Mismatches: 27, Indels: 18
0.70 0.18 0.12
Matches are distributed among these distances:
54 27 0.26
55 1 0.01
56 4 0.04
57 8 0.08
58 2 0.02
59 2 0.02
60 8 0.08
61 4 0.04
62 1 0.01
63 47 0.45
ACGTcount: A:0.14, C:0.08, G:0.50, T:0.28
Consensus pattern (62 bp):
AGTGGTTGCGGCAGTGGTTGTGGCGCTGGATGTGGAAACATGGTGAAGAGTGGTGGTGTGGT
Found at i:96025850 original size:51 final size:51
Alignment explanation
Indices: 96025795--96025949 Score: 157
Period size: 54 Copynumber: 3.0 Consensus size: 51
96025785 TGGTAGTGGT
* *
96025795 TGCGGCAGTGGATGTGGGGGTGGTTGTGGAAGCATAGTGAATAGTGGCAGC
1 TGCGGCGGTGGTTGTGGGGGTGGTTGTGGAAGCATAGTGAATAGTGGCAGC
* * * * * * **
96025846 TGCGGTGCCGGTGGTTGTGGTGCTGGATGTGGAAACATGGTGAAGAGTGGTGGC
1 TGC-G-G-CGGTGGTTGTGGGGGTGGTTGTGGAAGCATAGTGAATAGTGGCAGC
* * * *
96025900 TGTGGTGGTGGTTGCGGGGGTGGTTGTGGAAGCATAGTGAATAGCGGCAG
1 TGCGGCGGTGGTTGTGGGGGTGGTTGTGGAAGCATAGTGAATAGTGGCAG
96025950 TTGTGGCTCT
Statistics
Matches: 79, Mismatches: 22, Indels: 6
0.74 0.21 0.06
Matches are distributed among these distances:
51 37 0.47
52 2 0.03
53 2 0.03
54 38 0.48
ACGTcount: A:0.17, C:0.10, G:0.48, T:0.25
Consensus pattern (51 bp):
TGCGGCGGTGGTTGTGGGGGTGGTTGTGGAAGCATAGTGAATAGTGGCAGC
Found at i:96025973 original size:51 final size:51
Alignment explanation
Indices: 96025807--96025980 Score: 161
Period size: 51 Copynumber: 3.4 Consensus size: 51
96025797 CGGCAGTGGA
*
96025807 TGTGGGGGTGGTTGTGGAAGCATAGTGAATAGTGGCAGCTGCGGTGCCGGTGGT
1 TGTGGGGGTGGTTGTGGAAGCATAGTGAATAGTGGCAGCTGTGGTG-C--TGGT
* * * * * * ** *
96025861 TGTGGTGCTGGATGTGGAAACATGGTGAAGAGTGGTGGCTGTGGTGGTGGT
1 TGTGGGGGTGGTTGTGGAAGCATAGTGAATAGTGGCAGCTGTGGTGCTGGT
* * * *
96025912 TGCGGGGGTGGTTGTGGAAGCATAGTGAATAGCGGCAGTTGTGGCT-CTGGC
1 TGTGGGGGTGGTTGTGGAAGCATAGTGAATAGTGGCAGCTGTGG-TGCTGGT
* *
96025963 TGTGGTGGTGGCTGTGGA
1 TGTGGGGGTGGTTGTGGA
96025981 GGTTGTGGAA
Statistics
Matches: 93, Mismatches: 26, Indels: 5
0.75 0.21 0.04
Matches are distributed among these distances:
51 55 0.59
52 1 0.01
54 37 0.40
ACGTcount: A:0.14, C:0.10, G:0.48, T:0.28
Consensus pattern (51 bp):
TGTGGGGGTGGTTGTGGAAGCATAGTGAATAGTGGCAGCTGTGGTGCTGGT
Found at i:96026055 original size:15 final size:15
Alignment explanation
Indices: 96026035--96026063 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
96026025 GGAGAACAGT
96026035 GGTTGTGGCGGTGGC
1 GGTTGTGGCGGTGGC
96026050 GGTTGTGGCGGTGG
1 GGTTGTGGCGGTGG
96026064 GTGTGGCAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.10, G:0.62, T:0.28
Consensus pattern (15 bp):
GGTTGTGGCGGTGGC
Found at i:96026349 original size:27 final size:27
Alignment explanation
Indices: 96026319--96026372 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
96026309 GATTCTGGCT
96026319 TTGCATATCTATTTTCCTTAAAAAATA
1 TTGCATATCTATTTTCCTTAAAAAATA
96026346 TTGCATATCTATTTTCCTTAAAAAATA
1 TTGCATATCTATTTTCCTTAAAAAATA
96026373 AACTTTCCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.15, G:0.04, T:0.44
Consensus pattern (27 bp):
TTGCATATCTATTTTCCTTAAAAAATA
Found at i:96034908 original size:65 final size:65
Alignment explanation
Indices: 96034839--96034964 Score: 182
Period size: 65 Copynumber: 1.9 Consensus size: 65
96034829 AATAAATGTA
* * *
96034839 TTACCTTAAAAAGGTAAAGTCACTTTAAAGAAGTGTGCTATCT-AGTTCTTCTTTAAAGAAACAT
1 TTACCTTAAAAAGGTAAAGCCACTTTAAAGAAGTGTGCTATCTAAATT-TGCTTTAAAGAAACAT
96034903 G
65 G
* * *
96034904 TTACCTTAAAGAGGTAAAGCCACTTTAAATAAGTGTGTTATCTAAATTTGCTTTAAAGAAA
1 TTACCTTAAAAAGGTAAAGCCACTTTAAAGAAGTGTGCTATCTAAATTTGCTTTAAAGAAA
96034965 TGAGTTATCT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
65 51 0.94
66 3 0.06
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.34
Consensus pattern (65 bp):
TTACCTTAAAAAGGTAAAGCCACTTTAAAGAAGTGTGCTATCTAAATTTGCTTTAAAGAAACATG
Found at i:96039988 original size:19 final size:19
Alignment explanation
Indices: 96039964--96040000 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
96039954 ACTAGTAGGT
96039964 GTTACAATGTATATTCTTG
1 GTTACAATGTATATTCTTG
96039983 GTTACAATGTATATTCTT
1 GTTACAATGTATATTCTT
96040001 CTGAATAGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.27, C:0.11, G:0.14, T:0.49
Consensus pattern (19 bp):
GTTACAATGTATATTCTTG
Found at i:96042857 original size:16 final size:17
Alignment explanation
Indices: 96042836--96042874 Score: 57
Period size: 16 Copynumber: 2.5 Consensus size: 17
96042826 GGGAATTTTA
96042836 TTTCTTCTC-CTTTCTC
1 TTTCTTCTCTCTTTCTC
96042852 TTTCTTC-CTCTTTCTC
1 TTTCTTCTCTCTTTCTC
96042868 TTT-TTCT
1 TTTCTTCT
96042875 TTTTGATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 4 0.19
16 17 0.81
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTCTTCTCTCTTTCTC
Found at i:96049449 original size:26 final size:25
Alignment explanation
Indices: 96049416--96049474 Score: 68
Period size: 24 Copynumber: 2.4 Consensus size: 25
96049406 CAAGGAACAG
*
96049416 AAAAAATAACGTATATAA-AAATCTAA
1 AAAAAATAA-GTATAAAACAAAT-TAA
96049442 AAAAAAT-AGTATAAAACAAATTAA
1 AAAAAATAAGTATAAAACAAATTAA
*
96049466 AATAAATAA
1 AAAAAATAA
96049475 AACGTAAAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
24 16 0.55
25 6 0.21
26 7 0.24
ACGTcount: A:0.69, C:0.05, G:0.03, T:0.22
Consensus pattern (25 bp):
AAAAAATAAGTATAAAACAAATTAA
Found at i:96049738 original size:18 final size:18
Alignment explanation
Indices: 96049715--96049751 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
96049705 AAAAAGGTAT
96049715 ATGAAACAATTTAAAATA
1 ATGAAACAATTTAAAATA
* *
96049733 ATGAAACAGTTTTAAATA
1 ATGAAACAATTTAAAATA
96049751 A
1 A
96049752 ATAATACATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.57, C:0.05, G:0.08, T:0.30
Consensus pattern (18 bp):
ATGAAACAATTTAAAATA
Found at i:96055831 original size:77 final size:77
Alignment explanation
Indices: 96055704--96055851 Score: 287
Period size: 77 Copynumber: 1.9 Consensus size: 77
96055694 GCTTTGAATT
96055704 GACAATCCACACCGCAACATATGCCTTATTTGGCAGGAGTTTAACTGTGGCAATGATGGACAGAA
1 GACAATCCACACCGCAACATATGCCTTATTTGGCAGGAGTTTAACTGTGGCAATGATGGACAGAA
96055769 GTTTACAAGATG
66 GTTTACAAGATG
*
96055781 GACAATCCACACCGCAACATATGCCTTATTTGGCAGGAGTTTAACTGTGGCAATGGTGGACAGAA
1 GACAATCCACACCGCAACATATGCCTTATTTGGCAGGAGTTTAACTGTGGCAATGATGGACAGAA
96055846 GTTTAC
66 GTTTAC
96055852 TGGCTCGAGA
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
77 70 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (77 bp):
GACAATCCACACCGCAACATATGCCTTATTTGGCAGGAGTTTAACTGTGGCAATGATGGACAGAA
GTTTACAAGATG
Found at i:96060280 original size:3 final size:3
Alignment explanation
Indices: 96060265--96060301 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
96060255 TCAAATTATG
96060265 TCT TCT T-T T-T TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
96060302 AAAAGTTTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 4 0.12
3 29 0.88
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TCT
Found at i:96069330 original size:14 final size:14
Alignment explanation
Indices: 96069311--96069339 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
96069301 AAAGAAACGG
96069311 CATAGTCATTGAAA
1 CATAGTCATTGAAA
96069325 CATAGTCATTGAAA
1 CATAGTCATTGAAA
96069339 C
1 C
96069340 TCTGTACAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.28
Consensus pattern (14 bp):
CATAGTCATTGAAA
Found at i:96071332 original size:15 final size:15
Alignment explanation
Indices: 96071312--96071358 Score: 69
Period size: 15 Copynumber: 3.1 Consensus size: 15
96071302 GGGTTTATTA
96071312 TCTGGATTTCTTTAT
1 TCTGGATTTCTTTAT
*
96071327 TCTGGATTTCTCTA-
1 TCTGGATTTCTTTAT
96071341 TCTTGGATTTCTTTAT
1 TC-TGGATTTCTTTAT
96071357 TC
1 TC
96071359 GGTTTCCTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 2 0.07
15 24 0.86
16 2 0.07
ACGTcount: A:0.13, C:0.17, G:0.13, T:0.57
Consensus pattern (15 bp):
TCTGGATTTCTTTAT
Found at i:96073802 original size:46 final size:45
Alignment explanation
Indices: 96073748--96073923 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 45
96073738 TGGTTGAGCA
96073748 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *** * *
96073794 TCCAAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCATTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* * *
96073841 TCCGAGCTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
96073887 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
96073924 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 65 0.62
47 30 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.28
Consensus pattern (45 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:96073904 original size:93 final size:93
Alignment explanation
Indices: 96073745--96073915 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
96073735 GGATGGTTGA
* * * *
96073745 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAGT
1 GCATCCGAACTCATTGAGCTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCATTGAGT
96073810 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * * *
96073838 GCATCCGAGCTCGTTGAGCTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCATTGAGCTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCATTGAGT
96073903 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
96073916 ACTTATGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGCTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCATTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:96081896 original size:28 final size:26
Alignment explanation
Indices: 96081867--96081938 Score: 82
Period size: 23 Copynumber: 2.9 Consensus size: 26
96081857 ATTCATTTAT
96081867 TTGTAAATTATAATAACTTGATTTTGA
1 TTGT-AATTATAATAACTTGATTTTGA
*
96081894 TT-TAATTAT-ATGAA--T-ATATTGA
1 TTGTAATTATAAT-AACTTGATTTTGA
96081916 TTGTAATTATAATAACTTGATTT
1 TTGTAATTATAATAACTTGATTT
96081939 AATTATATGA
Statistics
Matches: 37, Mismatches: 2, Indels: 13
0.71 0.04 0.25
Matches are distributed among these distances:
22 8 0.22
23 10 0.27
24 4 0.11
25 9 0.24
26 4 0.11
27 2 0.05
ACGTcount: A:0.38, C:0.03, G:0.10, T:0.50
Consensus pattern (26 bp):
TTGTAATTATAATAACTTGATTTTGA
Found at i:96088895 original size:37 final size:38
Alignment explanation
Indices: 96088827--96088902 Score: 127
Period size: 37 Copynumber: 2.0 Consensus size: 38
96088817 ATTTAACTTT
*
96088827 AGTGAATCAATCAACCATATATCTTTTGCAGCAGTTGAA
1 AGTGAATCAACCAACCA-ATATCTTTTGCAGCAGTTGAA
96088866 AGTGAATCAACCAACC-ATATCTTTTGCAGCAGTTGAA
1 AGTGAATCAACCAACCAATATCTTTTGCAGCAGTTGAA
96088903 TTAACAATGA
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
37 21 0.58
39 15 0.42
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.29
Consensus pattern (38 bp):
AGTGAATCAACCAACCAATATCTTTTGCAGCAGTTGAA
Found at i:96093318 original size:17 final size:18
Alignment explanation
Indices: 96093286--96093323 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
96093276 TAGTAATTTG
*
96093286 TATAATACATACTTTTAA
1 TATAATACATAATTTTAA
*
96093304 TATAAT-CATAATTTTTA
1 TATAATACATAATTTTAA
96093321 TAT
1 TAT
96093324 GTATAAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (18 bp):
TATAATACATAATTTTAA
Found at i:96098066 original size:7 final size:7
Alignment explanation
Indices: 96098054--96098079 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
96098044 TCATTTGACC
96098054 ATTTAAA
1 ATTTAAA
96098061 ATTTAAA
1 ATTTAAA
96098068 ATTTAAA
1 ATTTAAA
96098075 ATTTA
1 ATTTA
96098080 TAGGGTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (7 bp):
ATTTAAA
Found at i:96098341 original size:30 final size:31
Alignment explanation
Indices: 96098283--96098342 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
96098273 ATATCCAGTG
* * *
96098283 AACTATTCGAAAATTTTTATTTAAGTCATTA
1 AACTATTCGAAAAATTTCATTCAAGTCATTA
96098314 AACTATTC-AAAAATTTCATTCAAGTCATT
1 AACTATTCGAAAAATTTCATTCAAGTCATT
96098343 GAGTTGCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.40, C:0.13, G:0.05, T:0.42
Consensus pattern (31 bp):
AACTATTCGAAAAATTTCATTCAAGTCATTA
Found at i:96107313 original size:22 final size:22
Alignment explanation
Indices: 96107268--96107313 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
96107258 ATCTTCAATC
* * * *
96107268 TTCACTTTGGTATCTACATTTT
1 TTCAATTTGGTACCTAAATATT
96107290 TTCAATTTGGTACCTAAATATT
1 TTCAATTTGGTACCTAAATATT
96107312 TT
1 TT
96107314 TGTGCCAATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.24, C:0.15, G:0.09, T:0.52
Consensus pattern (22 bp):
TTCAATTTGGTACCTAAATATT
Found at i:96115624 original size:18 final size:18
Alignment explanation
Indices: 96115601--96115635 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
96115591 TTAGAGGTTG
96115601 ATTACATAAGGATTAAAC
1 ATTACATAAGGATTAAAC
*
96115619 ATTACATAATGATTAAA
1 ATTACATAAGGATTAAA
96115636 TGCTCAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.31
Consensus pattern (18 bp):
ATTACATAAGGATTAAAC
Found at i:96124055 original size:61 final size:61
Alignment explanation
Indices: 96123976--96124094 Score: 202
Period size: 61 Copynumber: 2.0 Consensus size: 61
96123966 TGTTAACAAT
* * *
96123976 GGCAAAAAGGAGTTGAAGAGGAAATCTTGTATGTATTTCATCTGGATGAAGAAAAGTACAC
1 GGCAAAAAGGAATTGAAGAGGAAATCTTGTATGTATTTCATCTAGATGAAAAAAAGTACAC
*
96124037 GGCAAAATGGAATTGAAGAGGAAATCTTGTATGTATTTCATCTAGATGAAAAAAAGTA
1 GGCAAAAAGGAATTGAAGAGGAAATCTTGTATGTATTTCATCTAGATGAAAAAAAGTA
96124095 TTTAATACAT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 54 1.00
ACGTcount: A:0.41, C:0.08, G:0.24, T:0.26
Consensus pattern (61 bp):
GGCAAAAAGGAATTGAAGAGGAAATCTTGTATGTATTTCATCTAGATGAAAAAAAGTACAC
Found at i:96125978 original size:51 final size:51
Alignment explanation
Indices: 96125923--96126162 Score: 227
Period size: 51 Copynumber: 4.7 Consensus size: 51
96125913 ACTCAGAAGC
* * * *
96125923 ACCCCTAAGTAACCCGAATAAAGTAGCTTGAGGAGAAGCGAATACAGGAGA
1 ACCCCTATGTAACCCGAATAAAGTAGCTTGAGGAGAAGTGGACACAGGAGA
* * * * *
96125974 ACCCCTATGTAACCTGGATAAAGTAGCTGGCA-GAGAAGTGGACACAAGTGA
1 ACCCCTATGTAACCCGAATAAAGTAGCTTG-AGGAGAAGTGGACACAGGAGA
** * * *
96126025 ACTTCTATGTAACCC-AGAGAAAGTACCTTGCGGAGAAGTGGACACA-GATGA
1 ACCCCTATGTAACCCGA-ATAAAGTAGCTTGAGGAGAAGTGGACACAGGA-GA
* * * * *
96126076 ACCCCTATGTAACCCGAAGAAAGTATCTTGCGGAGAAGTGGACATAGGAGC
1 ACCCCTATGTAACCCGAATAAAGTAGCTTGAGGAGAAGTGGACACAGGAGA
* * *
96126127 ACCCCTAAGTAACCCGAATAAAG-AACTTGAAGAGAA
1 ACCCCTATGTAACCCGAATAAAGTAGCTTGAGGAGAA
96126163 ACTGACATAA
Statistics
Matches: 155, Mismatches: 28, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
50 11 0.07
51 140 0.90
52 4 0.03
ACGTcount: A:0.38, C:0.20, G:0.25, T:0.17
Consensus pattern (51 bp):
ACCCCTATGTAACCCGAATAAAGTAGCTTGAGGAGAAGTGGACACAGGAGA
Found at i:96127593 original size:46 final size:46
Alignment explanation
Indices: 96127533--96127806 Score: 406
Period size: 46 Copynumber: 6.0 Consensus size: 46
96127523 TTTGACATGA
* * * * * *
96127533 TGCCATAGTGTCTTTCAACTATCGTCTTACTCATTTTC-TATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*
96127579 TGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
* *
96127625 TGCCATGGTGTCTTTCAACCATGGTCTTACACATTTCATATTAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
** *
96127671 TATCATGGTGTCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
96127717 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
96127763 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATTTCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
96127807 AGAACACACT
Statistics
Matches: 209, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
45 4 0.02
46 205 0.98
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.39
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:96137589 original size:21 final size:21
Alignment explanation
Indices: 96137565--96137620 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 21
96137555 ATTCTAATTC
96137565 TAAAATATTTAAAGAAATAT-A
1 TAAAATATTTAAA-AAATATAA
96137586 T-AAATATTTTCAAAAAATATAA
1 TAAAATA-TTT-AAAAAATATAA
96137608 TAATAA-ATTTAAA
1 TAA-AATATTTAAA
96137621 TTTAAATTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
20 5 0.17
21 13 0.43
22 8 0.27
23 2 0.07
24 2 0.07
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (21 bp):
TAAAATATTTAAAAAATATAA
Found at i:96143190 original size:8 final size:8
Alignment explanation
Indices: 96143179--96143211 Score: 59
Period size: 8 Copynumber: 4.2 Consensus size: 8
96143169 TTAAAATTTT
96143179 AAAAATAA
1 AAAAATAA
96143187 AAAAATAA
1 AAAAATAA
96143195 AAAAAT-A
1 AAAAATAA
96143202 AAAAATAA
1 AAAAATAA
96143210 AA
1 AA
96143212 TTCTAAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 7 0.29
8 17 0.71
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAAATAA
Found at i:96143197 original size:15 final size:16
Alignment explanation
Indices: 96143179--96143211 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
96143169 TTAAAATTTT
96143179 AAAAATAAAAAAATAA
1 AAAAATAAAAAAATAA
96143195 AAAAAT-AAAAAATAA
1 AAAAATAAAAAAATAA
96143210 AA
1 AA
96143212 TTCTAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (16 bp):
AAAAATAAAAAAATAA
Found at i:96143226 original size:8 final size:8
Alignment explanation
Indices: 96143178--96143228 Score: 54
Period size: 8 Copynumber: 6.8 Consensus size: 8
96143168 TTTAAAATTT
96143178 TAAAAATA
1 TAAAAATA
96143186 -AAAAA-A
1 TAAAAATA
*
96143192 TAAAAAAA
1 TAAAAATA
96143200 TAAAAA-A
1 TAAAAATA
* *
96143207 TAAAATTC
1 TAAAAATA
96143215 TAAAAATA
1 TAAAAATA
96143223 TAAAAA
1 TAAAAA
96143229 CAAAATTTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
6 1 0.03
7 16 0.44
8 19 0.53
ACGTcount: A:0.78, C:0.02, G:0.00, T:0.20
Consensus pattern (8 bp):
TAAAAATA
Found at i:96143233 original size:22 final size:21
Alignment explanation
Indices: 96143195--96143240 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 21
96143185 AAAAAAATAA
*
96143195 AAAAATAAAAAATAAAATTCT
1 AAAAATAAAAAACAAAATTCT
*
96143216 AAAAATATAAAAACAAAATTTT
1 AAAAATA-AAAAACAAAATTCT
96143238 AAA
1 AAA
96143241 TTTACAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (21 bp):
AAAAATAAAAAACAAAATTCT
Found at i:96147035 original size:3 final size:3
Alignment explanation
Indices: 96147024--96147103 Score: 53
Period size: 3 Copynumber: 26.3 Consensus size: 3
96147014 TTTATTTTTT
* *
96147024 TTA TT- TTA TTA TTT TTA CTA TTA TT- TATA TTA TTA TTA TT- TCTCA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA T-T-A
96147069 TGTA TATA TTA TTA TT- TATA TTA TTA TTA -TA TTA T
1 T-TA T-TA TTA TTA TTA T-TA TTA TTA TTA TTA TTA T
96147104 ATACCCTCTC
Statistics
Matches: 62, Mismatches: 6, Indels: 18
0.72 0.07 0.21
Matches are distributed among these distances:
2 7 0.11
3 46 0.74
4 7 0.11
5 2 0.03
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:96147040 original size:9 final size:9
Alignment explanation
Indices: 96147015--96147103 Score: 56
Period size: 9 Copynumber: 9.4 Consensus size: 9
96147005 GAGCTTTGTT
*
96147015 TTATTTTTT
1 TTATTTTTA
96147024 TTA-TTTTA
1 TTATTTTTA
96147032 TTATTTTTA
1 TTATTTTTA
*
96147041 CTATTATTTA
1 TTATT-TTTA
*
96147051 -TATTATTA
1 TTATTTTTA
*
96147059 TTATTTCTCA
1 TTATTT-TTA
*
96147069 TGTATATATTA
1 T-TAT-TTTTA
*
96147080 TTATTTATA
1 TTATTTTTA
96147089 TTATTATTATA
1 TTATT-TT-TA
96147100 TTAT
1 TTAT
96147104 ATACCCTCTC
Statistics
Matches: 62, Mismatches: 10, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
8 10 0.16
9 28 0.45
10 11 0.18
11 12 0.19
12 1 0.02
ACGTcount: A:0.28, C:0.03, G:0.01, T:0.67
Consensus pattern (9 bp):
TTATTTTTA
Found at i:96147045 original size:17 final size:14
Alignment explanation
Indices: 96147013--96147064 Score: 50
Period size: 15 Copynumber: 3.6 Consensus size: 14
96147003 AAGAGCTTTG
96147013 TTTTATTTTTTTTA
1 TTTTATTTTTTTTA
*
96147027 TTTTATTATTTTTA
1 TTTTATTTTTTTTA
* * *
96147041 CTATTATTTATATTA
1 -TTTTATTTTTTTTA
96147056 TTATTATTT
1 TT-TTATTT
96147065 CTCATGTATA
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
14 14 0.47
15 16 0.53
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (14 bp):
TTTTATTTTTTTTA
Found at i:96147090 original size:12 final size:12
Alignment explanation
Indices: 96147023--96147103 Score: 78
Period size: 12 Copynumber: 6.8 Consensus size: 12
96147013 TTTTATTTTT
*
96147023 TTTATTTTATTA
1 TTTATATTATTA
* *
96147035 TTTTTACTATTA
1 TTTATATTATTA
96147047 TTTATATTATTA
1 TTTATATTATTA
* *
96147059 -TTAT-TTCTCA
1 TTTATATTATTA
96147069 TGTATATATTATTA
1 T-T-TATATTATTA
96147083 TTTATATTATTA
1 TTTATATTATTA
96147095 -TTATATTAT
1 TTTATATTAT
96147104 ATACCCTCTC
Statistics
Matches: 56, Mismatches: 9, Indels: 9
0.76 0.12 0.12
Matches are distributed among these distances:
10 4 0.07
11 13 0.23
12 30 0.54
13 4 0.07
14 5 0.09
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (12 bp):
TTTATATTATTA
Found at i:96147346 original size:16 final size:16
Alignment explanation
Indices: 96147321--96147355 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
96147311 TATATTAGTG
* *
96147321 TATATTTTTATGTATA
1 TATATATTTATATATA
96147337 TATATATTTATATATA
1 TATATATTTATATATA
96147353 TAT
1 TAT
96147356 TGTTTTTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (16 bp):
TATATATTTATATATA
Found at i:96159234 original size:42 final size:42
Alignment explanation
Indices: 96159181--96159934 Score: 246
Period size: 44 Copynumber: 17.5 Consensus size: 42
96159171 CTTAAACCCT
*
96159181 TAAGCAGTAGGGTAATAGACCGAATTACAGATCTTATCTCCC
1 TAAGCAGTAGGGTAACAGACCGAATTACAGATCTTATCTCCC
* * * * * * * * *
96159223 TAAGTAGTAGGGAAATAAATCGAGGTTGA-TGAGCCTTAAAC-CCC
1 TAAGCAGTAGGGTAACAGACCGA-ATT-ACAGA-TCTT-ATCTCCC
* *
96159267 TAAGCAGTAGGGTAACAGACCGAATTGCAGATCTTATTTCCC
1 TAAGCAGTAGGGTAACAGACCGAATTACAGATCTTATCTCCC
* * * * *
96159309 TAAGCAGTAGTGG-AGCAGATCGAA-GACGAAGGGTCTTAAAC-CCC
1 TAAGCAGTAG-GGTAACAGACCGAATTAC--A-GATCTT-ATCTCCC
* *
96159353 TAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCC
1 TAAGCAGTAGGGTAACAGACCGAATTACAGATCTTATCTCCC
* * * ** * * * *
96159395 TAAGCAATAGTGG-AGCAGATCGAAGAAAAAAGGGTTTTAAAC-CCC
1 TAAGCAGTAG-GGTAACAGACCG-A-ATTACA-GATCTT-ATCTCCC
* *
96159440 TAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCC
1 TAAGCAGTAGGGTAACAGACCGAATTACAGATCTTATCTCCC
* * ** ** *
96159482 TAAGCAGTAGTGG-AGCAGATC-AAAGACGAAGGGCCTTAAAC-CCC
1 TAAGCAGTAG-GGTAACAGACCGAATTAC--A-GATCTT-ATCTCCC
* * * * *
96159526 TAAGCAGTAGGGTAACAGGCTGAATTTCCAGATCTTAACCCCC
1 TAAGCAGTAGGGTAACAGACCGAA-TTACAGATCTTATCTCCC
* * * * * *
96159569 TTAGCAGTAGGGAAACAGATCGAA-GACGAAGGGTCTTAAAC-CCC
1 TAAGCAGTAGGGTAACAGACCGAATTAC--A-GATCTT-ATCTCCC
*
96159613 TAAGCAGTAGGGTAACAGACCAAATTACAGATCTTATCTCCC
1 TAAGCAGTAGGGTAACAGACCGAATTACAGATCTTATCTCCC
* ** ** * *
96159655 TAAGCAGTAGTGG-AGCAGA-TTAAAGACGAAGGGTCTTAAAC-CCC
1 TAAGCAGTAG-GGTAACAGACCGAATTAC--A-GATCTT-ATCTCCC
* *** * * *
96159699 TGAGCAGTAGGGTAACAGGTTGAATTTATAGATCTTAACCCCC
1 TAAGCAGTAGGGTAACAGACCGAA-TTACAGATCTTATCTCCC
* * ** * *
96159742 TAAGCAGTAGGGAAACAGATCGAA-GGCGATGGACCTTAACTCCC
1 TAAGCAGTAGGGTAACAGACCGAATTAC-A--GATCTTATCTCCC
* * * * *
96159786 TAAGCAGTAGGGTAACAGGCTGAATTTATAGATCTTAACCCCC
1 TAAGCAGTAGGGTAACAGACCGAA-TTACAGATCTTATCTCCC
* * ** * ** *
96159829 TAAGCAGTAGGGAAACAGATCGAAGGCGATAGGCCTTAAAC-CCC
1 TAAGCAGTAGGGTAACAGACCGAA--TTACAGATCTT-ATCTCCC
* * * * * *
96159873 TAAGTAGCAGGGTAACAGGCTGAATTTACAGATCTTAACCCCC
1 TAAGCAGTAGGGTAACAGACCGAA-TTACAGATCTTATCTCCC
*
96159916 TAAGCAGTAGGGAAACAGA
1 TAAGCAGTAGGGTAACAGA
96159935 TCAAAGACGG
Statistics
Matches: 514, Mismatches: 145, Indels: 105
0.67 0.19 0.14
Matches are distributed among these distances:
41 16 0.03
42 123 0.24
43 140 0.27
44 187 0.36
45 44 0.09
46 4 0.01
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.21
Consensus pattern (42 bp):
TAAGCAGTAGGGTAACAGACCGAATTACAGATCTTATCTCCC
Found at i:96159270 original size:44 final size:44
Alignment explanation
Indices: 96159134--96159278 Score: 145
Period size: 44 Copynumber: 3.3 Consensus size: 44
96159124 GATCTTATCT
* *
96159134 CCCTAAGTAGTAGGGAAACAAATCGAGGTTGATGAGCCTTAAAC
1 CCCTAAGCAGTAGGGAAATAAATCGAGGTTGATGAGCCTTAAAC
* * * * * * * *
96159178 CCTTAAGCAGTAGGGTAATAGACCGA-ATT-A-CAGATCTT-ATC
1 CCCTAAGCAGTAGGGAAATAAATCGAGGTTGATGAG-CCTTAAAC
*
96159219 TCCCTAAGTAGTAGGGAAATAAATCGAGGTTGATGAGCCTTAAAC
1 -CCCTAAGCAGTAGGGAAATAAATCGAGGTTGATGAGCCTTAAAC
96159264 CCCTAAGCAGTAGGG
1 CCCTAAGCAGTAGGG
96159279 TAACAGACCG
Statistics
Matches: 75, Mismatches: 20, Indels: 12
0.70 0.19 0.11
Matches are distributed among these distances:
41 4 0.05
42 25 0.33
43 4 0.05
44 38 0.51
45 4 0.05
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (44 bp):
CCCTAAGCAGTAGGGAAATAAATCGAGGTTGATGAGCCTTAAAC
Found at i:96159484 original size:173 final size:172
Alignment explanation
Indices: 96159119--96160228 Score: 903
Period size: 173 Copynumber: 6.4 Consensus size: 172
96159109 ATCAATGAAT
* * * * * ** * * *
96159119 TTGCAGATCTTATCTCCCTAAGTAGTAG-GGAAACAAATCGAGGTTGATGAGCCTTAAACCCTTA
1 TTGCAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATCAAAGACGAAGGGCCTTAAACCCCTA
* * * * * *
96159183 AGCAGTAGGGTAATAGACCGAATTACAGATCTTATCTCCCTAAGTAGTAGGGAAATAAATCGAGG
65 AGCAGTAGGGTAACAGACCAAATTACAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAG
** * * * *
96159248 TTGATGAGCCTTAAACCCCTAAGCAGTAGGGTAACAGACCGAA
130 AAGAAGGGTCTTAAACCCCTAAGCAGTAGGGTAACAGACCAAA
* * *
96159291 TTGCAGATCTTATTTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGAAGGGTCTTAAACCCCTAA
1 TTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGAAGGGCCTTAAACCCCTAA
* * *
96159356 GCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAATAGTGG-AGCAGATCGAAG
66 GCAGTAGGGTAACAGACCAAATTACAGATCTTATCTCCCTAAGCAGTAG-GGAAACAGATCGAAG
* *
96159420 AAAAAAGGGTTTTAAACCCCTAAGCAGTAGGGTAACAGACCAAA
130 -AAGAAGGGTCTTAAACCCCTAAGCAGTAGGGTAACAGACCAAA
96159464 TTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGAAGGGCCTTAAACCCCTAA
1 TTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGAAGGGCCTTAAACCCCTAA
* * * * * * *
96159529 GCAGTAGGGTAACAGGCTGAATTTCCAGATCTTAACCCCCTTAGCAGTAGGGAAACAGATCGAAG
66 GCAGTAGGGTAACAGAC-CAAATTACAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAG
*
96159594 ACGAAGGGTCTTAAACCCCTAAGCAGTAGGGTAACAGACCAAA
130 AAGAAGGGTCTTAAACCCCTAAGCAGTAGGGTAACAGACCAAA
* * * *
96159637 TTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGACGAAGGGTCTTAAACCCCTGA
1 TTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGAAGGGCCTTAAACCCCTAA
*** * * * *
96159702 GCAGTAGGGTAACAGGTTGAATTTATAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAG
66 GCAGTAGGGTAACA-GACCAAATTACAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAG
** * ** * * *
96159767 GCGATGGACCTT-AACTCCCTAAGCAGTAGGGTAACAGGCTGAAT
130 AAGAAGGGTCTTAAAC-CCCTAAGCAGTAGGGTAACAGAC-CAAA
** * * * * *
96159811 TTATAGATCTTAACCCCCTAAGCAGTAG-GGAAACAGATCGAAGGCGATA-GGCCTTAAACCCCT
1 TTGCAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATCAAAGACGA-AGGGCCTTAAACCCCT
* * * * * * * *
96159874 AAGTAGCAGGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAA
64 AAGCAGTAGGGTAACAGAC-CAAATTACAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGA
* * ***
96159939 AGACGGTAA--GCCTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAA
128 AGA-AG-AAGGGTCTTAAACCCCTAAGCAGTAGGGTAACAGACCAAA
* * * * ** *
96159984 TTTACAG-----A---CCCTAAACAGTAG-GGAAACAGATCGAAGGTGACA-AGCCTTAAACCCC
1 -TTGCAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATCAAAGACGA-AGGGCCTTAAACCCC
* * * * * * * * *
96160039 TAAGCAGTAGGGTAACAGGCTGAAGATTTACAAATCATAAACCCCCTAAGTAGTAGAGAAACATA
63 TAAGCAGTAGGGTAACAGAC-CAA-A-TTACAGATC-TTATCTCCCTAAGCAGTAGGGAAACAGA
** * * * *
96160104 TCGAAGGTGACA-AG-CTTTAACCCCTAAACAGTAGGGTAACAGGA-TAAA
124 TCGAAGAAGA-AGGGTCTTAAACCCCTAAGCAGTAGGGTAACA-GACCAAA
* * * * * * *
96160152 TTTACAGATCTTAACACCCTAAGCAGTAG-GGAAACAGATCGAAGACGATGGACCTTAAACCCCT
1 -TTGCAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATCAAAGACGAAGGGCCTTAAACCCCT
*
96160216 AAGCAGTAAGGTA
64 AAGCAGTAGGGTA
96160229 CCAAGCTGAA
Statistics
Matches: 801, Mismatches: 107, Indels: 56
0.83 0.11 0.06
Matches are distributed among these distances:
166 65 0.08
167 1 0.00
168 46 0.06
169 32 0.04
172 106 0.13
173 314 0.39
174 178 0.22
175 5 0.01
176 54 0.07
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (172 bp):
TTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGAAGGGCCTTAAACCCCTAA
GCAGTAGGGTAACAGACCAAATTACAGATCTTATCTCCCTAAGCAGTAGGGAAACAGATCGAAGA
AGAAGGGTCTTAAACCCCTAAGCAGTAGGGTAACAGACCAAA
Found at i:96159638 original size:260 final size:260
Alignment explanation
Indices: 96159171--96160228 Score: 1053
Period size: 260 Copynumber: 4.1 Consensus size: 260
96159161 GTTGATGAGC
* * * *
96159171 CTTAAACCCTTAAGCAGTAGGGTAATAGACCGAATTACAGATCTTATCTCCCTAAGTAGTAGGGA
1 CTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTACAGATCTTATCTCCCTAAGCAGTAGGGA
* * * ** * * * *
96159236 AATAAATCGAGGTTGATGAGCCTTAAACCCCTAAGCAGTAGGGTAACAGACCGAA-TTGCAGATC
66 AACAGATCGAAGACGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATC
*** *
96159300 TTATTTCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGAAGGGTCTTAAACCCCTAAGCAGTAGG
131 TTAACCCCCTAAGCAGTAG-GGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAAGCAGTAGG
* * *
96159364 GTAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGAAAAAAGGG
195 GTAACAGACCAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAAAAAAGGG
96159429 T
260 T
* *
96159430 TTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTACAGATCTTATCTCCCTAAGCAGTAG-GG
* * * *
96159495 -AGCAGATCAAAGACGAAGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTCCAGAT
65 AAACAGATCGAAGACGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGAT
*
96159559 CTTAACCCCCTTAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAAGCAGTAGG
130 CTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAAGCAGTAGG
* **
96159624 GTAACAGACCAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAG-ACGAAGGG
195 GTAACAGACCAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAAAAAAGGG
96159688 T
260 T
* *** * * * *
96159689 CTTAAACCCCTGAGCAGTAGGGTAACAGGTTGAATTTATAGATCTTAACCCCCTAAGCAGTAGGG
1 CTTAAACCCCTAAGCAGTAGGGTAACA-GACCAAATTACAGATCTTATCTCCCTAAGCAGTAGGG
* * *
96159754 AAACAGATCGAAGGCGATGGACCTT-AACTCCCTAAGCAGTAGGGTAACAGGCTGAATTTATAGA
65 AAACAGATCGAAGACGATGGGCCTTAAAC-CCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGA
* * * *
96159818 TCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATA-GGCCTTAAACCCCTAAGTAGCA
129 TCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGA-AGGGTCTTAAACCCCTAAGCAGTA
* * * * * * ***
96159882 GGGTAACAGGCTGAATTTACAGATCTTAACCCCCTAAGCAGTAG-GGAAACAGATCAAAGACGGT
193 GGGTAACAGAC-CAAATTACAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATCAAAGA-AAA
*
96159946 AA--GC
255 AAGGGT
*** *
96159950 CTTAAACCCCTAAGCAGTAGGGTAACAGGTTAAATTTACAG-----A---CCCTAAACAGTAGGG
1 CTTAAACCCCTAAGCAGTAGGGTAACAGACCAAA-TTACAGATCTTATCTCCCTAAGCAGTAGGG
** *** *
96160007 AAACAGATCGAAGGTGACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAAGATTTACAA
65 AAACAGATCGAAGACGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTG-A-ATTTACAG
* * * * ** * * *
96160072 ATCATAAACCCCCTAAGTAGTAGAGAAACATATCGAAGGTGACA-AG-CTTTAACCCCTAAACAG
128 ATC-TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGA-AGGGTCTTAAACCCCTAAGCAG
* * * * *
96160135 TAGGGTAACAGGA-TAAATTTACAGATCTTAACACCCTAAGCAGTAG-GGAAACAGATCGAAG-A
191 TAGGGTAACA-GACCAAA-TTACAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATCAAAGAA
** * **
96160197 CGATGGAC
253 AAAAGGGT
*
96160205 CTTAAACCCCTAAGCAGTAAGGTA
1 CTTAAACCCCTAAGCAGTAGGGTA
96160229 CCAAGCTGAA
Statistics
Matches: 682, Mismatches: 97, Indels: 44
0.83 0.12 0.05
Matches are distributed among these distances:
253 60 0.09
254 6 0.01
255 97 0.14
256 37 0.05
259 139 0.20
260 270 0.40
261 71 0.10
263 2 0.00
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (260 bp):
CTTAAACCCCTAAGCAGTAGGGTAACAGACCAAATTACAGATCTTATCTCCCTAAGCAGTAGGGA
AACAGATCGAAGACGATGGGCCTTAAACCCCTAAGCAGTAGGGTAACAGGCTGAATTTACAGATC
TTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGACGAAGGGTCTTAAACCCCTAAGCAGTAGGG
TAACAGACCAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAAAAAAGGGT
Found at i:96159978 original size:87 final size:87
Alignment explanation
Indices: 96159114--96160238 Score: 1024
Period size: 87 Copynumber: 13.0 Consensus size: 87
96159104 CTAGAATCAA
* * * * * ** *
96159114 TGAATTTGCAGATCTTATCTCCCTAAGTAGTAGGGAAACAAATCGAGGTTGATGAGCCTTAAACC
1 TGAATTTACAGATCTTAACTCCCTAAGCAGTAGGGAAACAGATCGAAGACGATAAGCCTTAAACC
* * *
96159179 CTTAAGCAGTAGGGTAATAGAC
66 CCTAAGCAGTAGGGTAACAGGC
* * * * * * ** *
96159201 CGAA-TTACAGATCTTATCTCCCTAAGTAGTAGGGAAATAAATCGAGGTTGATGAGCCTTAAACC
1 TGAATTTACAGATCTTAACTCCCTAAGCAGTAGGGAAACAGATCGAAGACGATAAGCCTTAAACC
*
96159265 CCTAAGCAGTAGGGTAACAGAC
66 CCTAAGCAGTAGGGTAACAGGC
* * ** * * *
96159287 CGAA-TTGCAGATCTTATTTCCCTAAGCAGTAGTGG-AGCAGATCGAAGACGA-AGGGTCTTAAA
1 TGAATTTACAGATCTTAACTCCCTAAGCAGTAG-GGAAACAGATCGAAGACGATA-AGCCTTAAA
*
96159349 CCCCTAAGCAGTAGGGTAACAGAC
64 CCCCTAAGCAGTAGGGTAACAGGC
* * * * * * * * **
96159373 -CAAATTGCAGATCTTATCTCCCTAAGCAATAGTGG-AGCAGATCGAAGA-AAAAAGGGTTTTAA
1 TGAATTTACAGATCTTAACTCCCTAAGCAGTAG-GGAAACAGATCGAAGACGATAA--GCCTTAA
*
96159435 ACCCCTAAGCAGTAGGGTAACAGAC
63 ACCCCTAAGCAGTAGGGTAACAGGC
* * * * * * *
96159460 -CAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATCAAAGACGA-AGGGCCTTAAA
1 TGAATTTACAGATCTTAACTCCCTAAGCAGTAG-GGAAACAGATCGAAGACGATA-AGCCTTAAA
96159522 CCCCTAAGCAGTAGGGTAACAGGC
64 CCCCTAAGCAGTAGGGTAACAGGC
* * * * *
96159546 TGAATTTCCAGATCTTAACCCCCTTAGCAGTAGGGAAACAGATCGAAGACGA-AGGGTCTTAAAC
1 TGAATTTACAGATCTTAACTCCCTAAGCAGTAGGGAAACAGATCGAAGACGATA-AGCCTTAAAC
*
96159610 CCCTAAGCAGTAGGGTAACAGAC
65 CCCTAAGCAGTAGGGTAACAGGC
* * * * ** * *
96159633 -CAAATTACAGATCTTATCTCCCTAAGCAGTAGTGG-AGCAGATTAAAGACGA-AGGGTCTTAAA
1 TGAATTTACAGATCTTAACTCCCTAAGCAGTAG-GGAAACAGATCGAAGACGATA-AGCCTTAAA
* *
96159695 CCCCTGAGCAGTAGGGTAACAGGT
64 CCCCTAAGCAGTAGGGTAACAGGC
* * * *
96159719 TGAATTTATAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGAT-GGACCTT-AAC
1 TGAATTTACAGATCTTAACTCCCTAAGCAGTAGGGAAACAGATCGAAGACGATAAG-CCTTAAAC
96159782 TCCCTAAGCAGTAGGGTAACAGGC
65 -CCCTAAGCAGTAGGGTAACAGGC
* * * *
96159806 TGAATTTATAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCGAAGGCGATAGGCCTTAAACC
1 TGAATTTACAGATCTTAACTCCCTAAGCAGTAGGGAAACAGATCGAAGACGATAAGCCTTAAACC
* *
96159871 CCTAAGTAGCAGGGTAACAGGC
66 CCTAAGCAGTAGGGTAACAGGC
* * *
96159893 TGAATTTACAGATCTTAACCCCCTAAGCAGTAGGGAAACAGATCAAAGACGGTAAGCCTTAAACC
1 TGAATTTACAGATCTTAACTCCCTAAGCAGTAGGGAAACAGATCGAAGACGATAAGCCTTAAACC
*
96159958 CCTAAGCAGTAGGGTAACAGGT
66 CCTAAGCAGTAGGGTAACAGGC
* * ** *
96159980 TAAATTTACAG------A--CCCTAAACAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAACC
1 TGAATTTACAGATCTTAACTCCCTAAGCAGTAGGGAAACAGATCGAAGACGATAAGCCTTAAACC
96160037 CCTAAGCAGTAGGGTAACAGGC
66 CCTAAGCAGTAGGGTAACAGGC
* * * * * * ** * *
96160059 TGAAGATTTACAAATCATAAACCCCCTAAGTAGTAGAGAAACATATCGAAGGTGACAAG-CTTTA
1 TG-A-ATTTACAGATC-TTAACTCCCTAAGCAGTAGGGAAACAGATCGAAGACGATAAGCCTTAA
* *
96160123 ACCCCTAAACAGTAGGGTAACAGGA
63 ACCCCTAAGCAGTAGGGTAACAGGC
* * *
96160148 TAAATTTACAGATCTTAACACCCTAAGCAGTAGGGAAACAGATCGAAGACGAT-GGACCTTAAAC
1 TGAATTTACAGATCTTAACTCCCTAAGCAGTAGGGAAACAGATCGAAGACGATAAG-CCTTAAAC
* * *
96160212 CCCTAAGCAGTAAGGTACCAAGC
65 CCCTAAGCAGTAGGGTAACAGGC
96160235 TGAA
1 TGAA
96160239 AATTACAACT
Statistics
Matches: 898, Mismatches: 109, Indels: 62
0.84 0.10 0.06
Matches are distributed among these distances:
79 61 0.07
80 1 0.00
81 8 0.01
85 4 0.00
86 331 0.37
87 425 0.47
88 8 0.01
89 28 0.03
90 32 0.04
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.21
Consensus pattern (87 bp):
TGAATTTACAGATCTTAACTCCCTAAGCAGTAGGGAAACAGATCGAAGACGATAAGCCTTAAACC
CCTAAGCAGTAGGGTAACAGGC
Found at i:96160044 original size:79 final size:79
Alignment explanation
Indices: 96159913--96160159 Score: 262
Period size: 79 Copynumber: 3.0 Consensus size: 79
96159903 GATCTTAACC
* * ** **
96159913 CCCTAAGCAGTAGGGAAACAGATCAAAGACGGTAAGCCTTAAACCCCTAAGCAGTAGGGTAACAG
1 CCCTAAACAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAG
96159978 GTTAAATTTACAGA
66 GTTAAATTTACAGA
96159992 CCCTAAACAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAG
1 CCCTAAACAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAG
* *
96160057 GCTGAAGATTTACAAA
66 G-TTAA-ATTTACAGA
* * * * *
96160073 TCATAAACCCCCTAAGTAGTAGAGAAACATATCGAAGGTGACAAG-CTTTAACCCCTAAACAGTA
1 CCCTAAA----C--AGTAG--G-GAAACAGATCGAAGGTGACAAGCCTTAAACCCCTAAGCAGTA
*
96160137 GGGTAACAGGATAAATTTACAGA
57 GGGTAACAGGTTAAATTTACAGA
96160160 TCTTAACACC
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
79 60 0.43
80 3 0.02
81 13 0.09
85 1 0.01
87 13 0.09
88 2 0.01
89 28 0.20
90 21 0.15
ACGTcount: A:0.40, C:0.20, G:0.21, T:0.18
Consensus pattern (79 bp):
CCCTAAACAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAACCCCTAAGCAGTAGGGTAACAG
GTTAAATTTACAGA
Found at i:96160056 original size:44 final size:44
Alignment explanation
Indices: 96159992--96160223 Score: 154
Period size: 44 Copynumber: 5.3 Consensus size: 44
96159982 AATTTACAGA
*
96159992 CCCTAAACAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAAC
1 CCCTAAGCAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAAC
* * * * ** *
96160036 CCCTAAGCAGTAGGGTAACAG-GCTGAAGATTTACAAATCATAAACC
1 CCCTAAGCAGTAGGGAAACAGATC-GAAG-GTGACAAGCCTTAAA-C
* * * *
96160082 CCCTAAGTAGTAGAGAAACATATCGAAGGTGACAAG-CTTTAAC
1 CCCTAAGCAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAAC
* * ** * *
96160125 CCCTAAACAGTAGGGTAACAGGAT--AAATTTAC-AGATCTT-AAC
1 CCCTAAGCAGTAGGGAAACA-GATCGAAGGTGACAAG-CCTTAAAC
** **
96160167 ACCCTAAGCAGTAGGGAAACAGATCGAAGACGA-TGGACCTTAAAC
1 -CCCTAAGCAGTAGGGAAACAGATCGAAGGTGACAAG-CCTTAAAC
96160212 CCCTAAGCAGTA
1 CCCTAAGCAGTA
96160224 AGGTACCAAG
Statistics
Matches: 142, Mismatches: 34, Indels: 24
0.71 0.17 0.12
Matches are distributed among these distances:
41 2 0.01
42 11 0.08
43 39 0.27
44 49 0.35
45 18 0.13
46 22 0.15
47 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.21, T:0.18
Consensus pattern (44 bp):
CCCTAAGCAGTAGGGAAACAGATCGAAGGTGACAAGCCTTAAAC
Found at i:96160917 original size:8 final size:8
Alignment explanation
Indices: 96160904--96160928 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
96160894 GAGAGCTTTG
96160904 TTTTATTT
1 TTTTATTT
96160912 TTTTATTT
1 TTTTATTT
96160920 TTTTATTT
1 TTTTATTT
96160928 T
1 T
96160929 ACTATTATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (8 bp):
TTTTATTT
Found at i:96160951 original size:11 final size:11
Alignment explanation
Indices: 96160931--96160991 Score: 54
Period size: 11 Copynumber: 5.3 Consensus size: 11
96160921 TTTATTTTAC
96160931 TATTATTTATAT
1 TATTA-TTATAT
*
96160943 TATTATTATTT
1 TATTATTATAT
96160954 CTCATGTA-TATAT
1 -T-AT-TATTATAT
96160967 TA-TATTTATAT
1 TATTA-TTATAT
96160978 TATTATTATAT
1 TATTATTATAT
96160989 TAT
1 TAT
96160992 ATATACCCTT
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
9 2 0.05
11 22 0.54
12 9 0.22
13 6 0.15
14 2 0.05
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (11 bp):
TATTATTATAT
Found at i:96161109 original size:12 final size:13
Alignment explanation
Indices: 96161069--96161114 Score: 53
Period size: 12 Copynumber: 3.7 Consensus size: 13
96161059 TGACTACTAT
96161069 TATTA-TATATATG
1 TATTATTAT-TATG
*
96161082 TATTATTGTT-TG
1 TATTATTATTATG
96161094 TATTATTATTAT-
1 TATTATTATTATG
96161106 TATTATTAT
1 TATTATTAT
96161115 CACCCCTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
12 20 0.69
13 7 0.24
14 2 0.07
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (13 bp):
TATTATTATTATG
Found at i:96161409 original size:120 final size:120
Alignment explanation
Indices: 96161196--96161413 Score: 298
Period size: 120 Copynumber: 1.8 Consensus size: 120
96161186 TTGCTATTAC
* * * *
96161196 TATTATTATTAAATATTAGTGTATATTTTTATGTATCTATATATATATTTATATATAGTATTGTT
1 TATTATTATTAAATAGTAGTGTATATTTCTATATATCTATATATATATTTATATATAGTATTGTA
* *
96161261 TTTTATTACTTTAATTTAATATTTTTATTATATTTGCTTTTTGTATTTCTATATT
66 TTATATTACTTTAATTTAATATTATTATTATATTTGCTTTTTGTATTTCTATATT
* * *
96161316 TATTATTATTATATAGTAGTGTGTATTTCTATTATATACATATATATATTTTTATATATAGTA-T
1 TATTATTATTAAATAGTAGTGTATATTTCTA-TATAT-C-TATATATATATTTATATATAGTATT
*
96161380 -TATTAT-TTACTTTACTTTAATATTATTATTATAT
63 GTATTATATTACTTTAATTTAATATTATTATTATAT
96161414 CCAACCCAAT
Statistics
Matches: 85, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
120 53 0.62
121 8 0.09
122 2 0.02
123 22 0.26
ACGTcount: A:0.31, C:0.04, G:0.06, T:0.60
Consensus pattern (120 bp):
TATTATTATTAAATAGTAGTGTATATTTCTATATATCTATATATATATTTATATATAGTATTGTA
TTATATTACTTTAATTTAATATTATTATTATATTTGCTTTTTGTATTTCTATATT
Found at i:96169745 original size:27 final size:27
Alignment explanation
Indices: 96169707--96169769 Score: 99
Period size: 27 Copynumber: 2.3 Consensus size: 27
96169697 AAGAAAAAAA
* * *
96169707 AGACAGACAGAGATAAGCGTGTCACAG
1 AGACAAACAGAGAGAAACGTGTCACAG
96169734 AGACAAACAGAGAGAAACGTGTCACAG
1 AGACAAACAGAGAGAAACGTGTCACAG
96169761 AGACAAACA
1 AGACAAACA
96169770 AAATCAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.48, C:0.19, G:0.25, T:0.08
Consensus pattern (27 bp):
AGACAAACAGAGAGAAACGTGTCACAG
Found at i:96174379 original size:15 final size:16
Alignment explanation
Indices: 96174359--96174397 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
96174349 AAAATTTTTT
*
96174359 ATTTATAAT-TATTTA
1 ATTTATAATCTATCTA
96174374 ATTTATAATCTATCTA
1 ATTTATAATCTATCTA
*
96174390 TTTTATAA
1 ATTTATAA
96174398 ACATTGACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.56
Consensus pattern (16 bp):
ATTTATAATCTATCTA
Found at i:96181750 original size:13 final size:13
Alignment explanation
Indices: 96181729--96181767 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
96181719 ATGTGAAGAA
96181729 TATTATTTAAAAT
1 TATTATTTAAAAT
*
96181742 TATTTTTTAAAATT
1 TATTATTTAAAA-T
96181756 TATTA-TTAAAAT
1 TATTATTTAAAAT
96181768 AAAATTGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 1 0.04
13 17 0.74
14 5 0.22
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TATTATTTAAAAT
Found at i:96181900 original size:17 final size:18
Alignment explanation
Indices: 96181875--96181917 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
96181865 TTTATTAATA
*
96181875 TTAAAAA-TTATAATATT
1 TTAAAAATTTAAAATATT
*
96181892 TTAATAATTTAAAATATT
1 TTAAAAATTTAAAATATT
*
96181910 TTTAAAAT
1 TTAAAAAT
96181918 AAAAATAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TTAAAAATTTAAAATATT
Found at i:96187949 original size:27 final size:27
Alignment explanation
Indices: 96187917--96187971 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
96187907 AATCCTCGAA
96187917 AACAAGAATAATCACCATTTGATCCTT
1 AACAAGAATAATCACCATTTGATCCTT
96187944 AACAAGAATAATCACCATTTGATCCTT
1 AACAAGAATAATCACCATTTGATCCTT
96187971 A
1 A
96187972 CTTAAATCTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.42, C:0.22, G:0.07, T:0.29
Consensus pattern (27 bp):
AACAAGAATAATCACCATTTGATCCTT
Found at i:96190658 original size:24 final size:26
Alignment explanation
Indices: 96190596--96190659 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 26
96190586 GCTTGAACTT
* *
96190596 CCCAATATATGGCTATTCGGAGCTTA
1 CCCATTATATGGCTCTTCGGAGCTTA
* *
96190622 CCAATTA-ATGGCTCTTTGGAGC-TA
1 CCCATTATATGGCTCTTCGGAGCTTA
96190646 CCCATTATA-GGCTC
1 CCCATTATATGGCTC
96190660 GCTTGAGCTT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
24 13 0.41
25 14 0.44
26 5 0.16
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (26 bp):
CCCATTATATGGCTCTTCGGAGCTTA
Found at i:96193934 original size:21 final size:20
Alignment explanation
Indices: 96193909--96193963 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 20
96193899 ATATATATTA
*
96193909 TAATATTATAATATTAAATCT
1 TAATATTATAATA-TAAATAT
*
96193930 TAATATT-TAAGTATATATAT
1 TAATATTATAA-TATAAATAT
96193950 TACATATTATAATA
1 TA-ATATTATAATA
96193964 AGTAAATGAT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
20 10 0.34
21 16 0.55
22 3 0.10
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (20 bp):
TAATATTATAATATAAATAT
Found at i:96194480 original size:18 final size:19
Alignment explanation
Indices: 96194457--96194494 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
96194447 AATAGGAAAT
96194457 TGAATTTT-ATTGTATTGA
1 TGAATTTTAATTGTATTGA
*
96194475 TGAATTTTAATTGTTTTGA
1 TGAATTTTAATTGTATTGA
96194494 T
1 T
96194495 TTTATAGCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.26, C:0.00, G:0.16, T:0.58
Consensus pattern (19 bp):
TGAATTTTAATTGTATTGA
Found at i:96194926 original size:41 final size:38
Alignment explanation
Indices: 96194864--96195001 Score: 118
Period size: 40 Copynumber: 3.5 Consensus size: 38
96194854 TCTCCGAGCT
*
96194864 GATGAGACACTGGGTGTCAATTTACTACTTCAGATTAATTC
1 GATGAGACACTGGGTGCCAATTTA-TACTTC-GATT-ATTC
* * *
96194905 GATGAGGCACTGGGTGCCAA-TT-TACTTCGGTTTAGTC
1 GATGAGACACTGGGTGCCAATTTATACTTC-GATTATTC
* ** * *
96194942 GATGAGACATTGGGTGTTAATTTATTACTTTGAATTATCC
1 GATGAGACACTGGGTGCCAATTTA-TACTTCG-ATTATTC
*
96194982 GATGAGGCACTGGGTGCCAA
1 GATGAGACACTGGGTGCCAA
96195002 ACTGTTTGTG
Statistics
Matches: 76, Mismatches: 17, Indels: 9
0.75 0.17 0.09
Matches are distributed among these distances:
37 19 0.25
38 11 0.14
39 1 0.01
40 27 0.36
41 18 0.24
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (38 bp):
GATGAGACACTGGGTGCCAATTTATACTTCGATTATTC
Found at i:96197376 original size:13 final size:13
Alignment explanation
Indices: 96197358--96197384 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
96197348 GAAGTAAACG
96197358 CACACGGGCGTGT
1 CACACGGGCGTGT
96197371 CACACGGGCGTGT
1 CACACGGGCGTGT
96197384 C
1 C
96197385 CCTGCCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:96211979 original size:15 final size:15
Alignment explanation
Indices: 96211944--96211995 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
96211934 TTAAGAATTT
*
96211944 TATTAAATTAT-ATA
1 TATTTAATTATAATA
96211958 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
96211972 TATTTAATAATAAT-
1 TATTTAATTATAATA
96211986 TATGTTAATT
1 TAT-TTAATT
96211996 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:96212050 original size:120 final size:120
Alignment explanation
Indices: 96211718--96212229 Score: 910
Period size: 119 Copynumber: 4.3 Consensus size: 120
96211708 TAAACAATAA
* * *
96211718 ATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTT-TCA-TTTATAGTATCATATATT
1 ATTTTAATTATAATATATTTAATAATAATTATGTT--AATTTAT-ATTTTACAGTATCATATATT
96211780 ATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
63 ATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
96211838 ATTTTAATTATAATATATTT-ATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATG
1 ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATG
*
96211902 ATTAGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
66 ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
96211957 ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATG
1 ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATG
96212022 ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
66 ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
*
96212077 ATTTTAATTAT-ATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATG
1 ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATG
96212141 ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATT-AATTATAT
66 ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
96212195 ATTTTAATTATAATATATTTAATAATAATTATGTT
1 ATTTTAATTATAATATATTTAATAATAATTATGTT
96212230 TAAATATGAT
Statistics
Matches: 381, Mismatches: 6, Indels: 11
0.96 0.02 0.03
Matches are distributed among these distances:
118 25 0.07
119 226 0.59
120 130 0.34
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.50
Consensus pattern (120 bp):
ATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATG
ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
Found at i:96212137 original size:239 final size:238
Alignment explanation
Indices: 96211718--96212234 Score: 907
Period size: 239 Copynumber: 2.2 Consensus size: 238
96211708 TAAACAATAA
* * *
96211718 ATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTTTCATTTATAGTATCATATATTAT
1 ATTTTAATTATAATATATTTAATAATAATTATGTT-AAATTTTCATTTACAGTATCATATATTAT
96211782 GATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATT
65 GATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATT
96211847 ATAATATATTTATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTAGAGTAA
130 ATAATATATTTATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTAGAGTAA
96211912 ATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATAT
195 ATTCATATAAGAATATTAATTATTAAGAATTTTATT-AATTATAT
96211957 ATTTTAATTATAATATATTTAATAATAATTATGTT-AATTTAT-ATTTTACAGTATCATATATTA
1 ATTTTAATTATAATATATTTAATAATAATTATGTTAAATTT-TCA-TTTACAGTATCATATATTA
96212020 TGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAAT
64 TGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAAT
* *
96212085 TAT-ATATATTTAATAATAATTATGTTAATTTATATTTTATAGTATCATATATTATGATTTGAGT
129 TATAATATATTT-ATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTAGAGT
96212149 AAATTCATATAAGAATATTAATTATTAAGAATTTTATTAATTATAT
193 AAATTCATATAAGAATATTAATTATTAAGAATTTTATTAATTATAT
96212195 ATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 ATTTTAATTATAATATATTTAATAATAATTATG-TTAAAT
96212235 ATGATTAAAT
Statistics
Matches: 267, Mismatches: 5, Indels: 11
0.94 0.02 0.04
Matches are distributed among these distances:
238 55 0.21
239 207 0.78
240 5 0.02
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (238 bp):
ATTTTAATTATAATATATTTAATAATAATTATGTTAAATTTTCATTTACAGTATCATATATTATG
ATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTA
TAATATATTTATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTAGAGTAAA
TTCATATAAGAATATTAATTATTAAGAATTTTATTAATTATAT
Found at i:96212198 original size:16 final size:16
Alignment explanation
Indices: 96212191--96212232 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
96212181 TTTATTAATT
96212191 ATATATTTTAATTATA
1 ATATATTTTAATTATA
*
96212207 ATATA-TTTAATAATA
1 ATATATTTTAATTATA
96212222 AT-TATGTTTAA
1 ATATAT-TTTAA
96212233 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATTATA
Found at i:96212203 original size:13 final size:15
Alignment explanation
Indices: 96212185--96212223 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
96212175 AAGAATTTTA
96212185 TTAATTAT-ATAT-T
1 TTAATTATAATATAT
96212198 TTAATTATAATATAT
1 TTAATTATAATATAT
*
96212213 TTAATAATAAT
1 TTAATTATAAT
96212224 TATGTTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 8 0.35
14 4 0.17
15 11 0.48
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TTAATTATAATATAT
Found at i:96212363 original size:18 final size:17
Alignment explanation
Indices: 96212335--96212369 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
96212325 ATTATTAAGA
*
96212335 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
96212352 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
96212370 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:96212375 original size:157 final size:156
Alignment explanation
Indices: 96212167--96212475 Score: 573
Period size: 157 Copynumber: 2.0 Consensus size: 156
96212157 ATAAGAATAT
*
96212167 TAATTATTAAGAATTTTATTAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTA
1 TAATTATTAAGAATTTTATTAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
* *
96212232 AATATGATTAAATTATTTATTATTGATATTAATAATCTTATTAAAATTTAAATAACAATAACAAT
66 AATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
96212297 AATAATTTACCAAAACAAATTTCTGC
131 AATAATTTACCAAAACAAATTTCTGC
96212323 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATT-AATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
96212388 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
65 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
96212453 TAATCATTTACCAAAACAAATTT
130 TAATAATTTACCAAAACAAATTT
96212476 ATGTTAAGGG
Statistics
Matches: 148, Mismatches: 4, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
156 20 0.14
157 128 0.86
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.45
Consensus pattern (156 bp):
TAATTATTAAGAATTTTATTAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTTA
AATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAAT
AATAATTTACCAAAACAAATTTCTGC
Found at i:96212626 original size:16 final size:16
Alignment explanation
Indices: 96212605--96212672 Score: 91
Period size: 16 Copynumber: 4.2 Consensus size: 16
96212595 GATTTGCTAT
96212605 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
96212621 TACACCTCTAATCTAA
1 TACACCTCTAATCCAA
*
96212637 TACACCTTTAATCCAA
1 TACACCTCTAATCCAA
** *
96212653 TATGCGTCTAATCCAA
1 TACACCTCTAATCCAA
96212669 TACA
1 TACA
96212673 GCGAACCAAA
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.37, C:0.31, G:0.03, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:96213562 original size:22 final size:21
Alignment explanation
Indices: 96213534--96213574 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
96213524 ATTAAATTAT
96213534 TAAATATTAAAATAAAATAAAA
1 TAAATATTAAAA-AAAATAAAA
*
96213556 TAAATATTTAAAAAAATAA
1 TAAATATTAAAAAAAATAA
96213575 TATAGACGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (21 bp):
TAAATATTAAAAAAAATAAAA
Found at i:96218513 original size:17 final size:18
Alignment explanation
Indices: 96218470--96218520 Score: 70
Period size: 17 Copynumber: 2.9 Consensus size: 18
96218460 TTCAGTGACA
96218470 ATCAGTTATTCAGTAATG
1 ATCAGTTATTCAGTAATG
*
96218488 ATCAATTA-TCAGTAAT-
1 ATCAGTTATTCAGTAATG
96218504 ATTCAGTTATTCAGTAA
1 A-TCAGTTATTCAGTAA
96218521 CAGTCTAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 1 0.03
17 14 0.48
18 14 0.48
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (18 bp):
ATCAGTTATTCAGTAATG
Found at i:96218585 original size:18 final size:18
Alignment explanation
Indices: 96218459--96218586 Score: 98
Period size: 18 Copynumber: 7.2 Consensus size: 18
96218449 GCAGTCATTC
* *
96218459 ATTCAGTGACAATCAGTT
1 ATTCAGTAACAATCAATT
**
96218477 ATTCAGTAATGATCAATT
1 ATTCAGTAACAATCAATT
* * *
96218495 A-TCAGTAATATTCAGTT
1 ATTCAGTAACAATCAATT
*
96218512 ATTCAGTAACAGTCTAA-T
1 ATTCAGTAACAATC-AATT
* *
96218530 ATCCAGTAACAGTCAATT
1 ATTCAGTAACAATCAATT
* * *
96218548 ATCCGGTAACAGTCAATT
1 ATTCAGTAACAATCAATT
* *
96218566 ATTCAGTAATAATCAGTT
1 ATTCAGTAACAATCAATT
96218584 ATT
1 ATT
96218587 TTATACCTTT
Statistics
Matches: 90, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
17 16 0.18
18 73 0.81
19 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35
Consensus pattern (18 bp):
ATTCAGTAACAATCAATT
Found at i:96218700 original size:6 final size:6
Alignment explanation
Indices: 96218691--96218732 Score: 68
Period size: 6 Copynumber: 7.2 Consensus size: 6
96218681 CCGAAGCCGG
*
96218691 AACAGT AACAGT AACAGT AACAGT AACAGT AGCAGT -ACAGT A
1 AACAGT AACAGT AACAGT AACAGT AACAGT AACAGT AACAGT A
96218733 CATAGAGTAC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
5 4 0.12
6 29 0.88
ACGTcount: A:0.48, C:0.17, G:0.19, T:0.17
Consensus pattern (6 bp):
AACAGT
Found at i:96218816 original size:45 final size:45
Alignment explanation
Indices: 96218762--96218954 Score: 264
Period size: 45 Copynumber: 4.3 Consensus size: 45
96218752 ACAAATCCGG
* *
96218762 AACAGTAACAGTAACAGTATTCAACACACAAAGTG-CTGAATCGGT
1 AACAGTAACAGTAACAATATTCGACACACAAAGTGTC-GAATCGGT
* * *
96218807 AACGGTAACAGTAACAATATTCGACACACACAGTGCCGAATCGGT
1 AACAGTAACAGTAACAATATTCGACACACAAAGTGTCGAATCGGT
* *
96218852 AACAGTATCAGTAACAATATTCGACACACAAAGTGTCAAATCGGT
1 AACAGTAACAGTAACAATATTCGACACACAAAGTGTCGAATCGGT
* *
96218897 AACAATAGCAGTAACAATATTCGACAC-CTAAAGTGTCGAATCGGT
1 AACAGTAACAGTAACAATATTCGACACAC-AAAGTGTCGAATCGGT
*
96218942 AACAGTAGCAGTA
1 AACAGTAACAGTA
96218955 GCGGTAACAG
Statistics
Matches: 133, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
44 1 0.01
45 131 0.98
46 1 0.01
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.20
Consensus pattern (45 bp):
AACAGTAACAGTAACAATATTCGACACACAAAGTGTCGAATCGGT
Found at i:96221043 original size:2 final size:2
Alignment explanation
Indices: 96221036--96221068 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
96221026 TGTTTTACTT
96221036 TA TA TA TA TA TA TA TA TA TA TA TA TA TA -A TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
96221069 ATAACAATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:96222756 original size:100 final size:99
Alignment explanation
Indices: 96222590--96222800 Score: 309
Period size: 98 Copynumber: 2.1 Consensus size: 99
96222580 TAATAATTAA
*
96222590 TAAATATATTTTTAATTAATAACTCTTTTATTTATATAAATAAAATAATAAATATGTAATTATAT
1 TAAATATATTTTTAATTAATAACTCCTTTATTTATATAAATAAAATAATAAATATGTAATTATAT
*
96222655 AATAAAAATATA-TTTTTATATATATTATTATGT
66 AATAAAAATATATTTTTTATATATATCATTATGT
* *
96222688 TGAAA-ATATTTTTAATTAATAGCTCCTTTATTTATATATATAAAAATTAATAAATATGTAATTA
1 T-AAATATATTTTTAATTAATAACTCCTTTATTTATATAAAT-AAAA-TAATAAATATGTAATTA
* * * *
96222752 TATAATGAAATTATATTTTTTATATTTATCATTTTGT
63 TATAATAAAAATATATTTTTTATATATATCATTATGT
96222789 TAAATATATTTT
1 TAAATATATTTT
96222801 ATTTTAAATT
Statistics
Matches: 100, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
98 34 0.34
99 7 0.07
100 33 0.33
101 26 0.26
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (99 bp):
TAAATATATTTTTAATTAATAACTCCTTTATTTATATAAATAAAATAATAAATATGTAATTATAT
AATAAAAATATATTTTTTATATATATCATTATGT
Found at i:96222826 original size:100 final size:100
Alignment explanation
Indices: 96222595--96222800 Score: 258
Period size: 100 Copynumber: 2.1 Consensus size: 100
96222585 ATTAATAAAT
* **
96222595 ATATTTTTAATTAATAACTCTTTTA-TT-TATATAAATAAAATAATAAATATGTAATTATATAAT
1 ATATTTTTAATTAATAGCTAATTTATTTATATATAAATAAAATAATAAATATGTAATTATATAAT
*
96222658 AAAAATATATTTTTATATATATTATTATGTTGAAA
66 AAAAATATATTTTTATATATATCATTATGTTGAAA
** *
96222693 ATATTTTTAATTAATAGCTCCTTTATTTATATATATAA-AAATTAATAAATATGTAATTATATAA
1 ATATTTTTAATTAATAGCTAATTTATTTATATATA-AATAAAATAATAAATATGTAATTATATAA
* * * *
96222757 TGAAATTATATTTTTTATATTTATCATTTTGTT-AAA
65 TAAAAATATA-TTTTTATATATATCATTATGTTGAAA
96222793 TATATTTT
1 -ATATTTT
96222801 ATTTTAAATT
Statistics
Matches: 95, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
98 23 0.24
99 2 0.02
100 42 0.44
101 28 0.29
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.50
Consensus pattern (100 bp):
ATATTTTTAATTAATAGCTAATTTATTTATATATAAATAAAATAATAAATATGTAATTATATAAT
AAAAATATATTTTTATATATATCATTATGTTGAAA
Found at i:96232000 original size:14 final size:15
Alignment explanation
Indices: 96231981--96232009 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
96231971 CAAGCATTCA
96231981 TTATG-TTTTCTTTG
1 TTATGTTTTTCTTTG
96231995 TTATGTTTTTCTTTG
1 TTATGTTTTTCTTTG
96232010 GACTTAAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.07, C:0.07, G:0.14, T:0.72
Consensus pattern (15 bp):
TTATGTTTTTCTTTG
Found at i:96235937 original size:29 final size:28
Alignment explanation
Indices: 96235895--96235961 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
96235885 TTACATGTTG
*
96235895 TATAAATTTTTTATGACT-TTATAAAATTT
1 TATAATTTTTTTAT-ACTCTTAT-AAATTT
* *
96235924 TATAATTTTTTTATATTCTTATATATTT
1 TATAATTTTTTTATACTCTTATAAATTT
96235952 TATAATTTTT
1 TATAATTTTT
96235962 ATAAAAGTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
28 17 0.50
29 17 0.50
ACGTcount: A:0.33, C:0.03, G:0.01, T:0.63
Consensus pattern (28 bp):
TATAATTTTTTTATACTCTTATAAATTT
Found at i:96236037 original size:21 final size:21
Alignment explanation
Indices: 96235991--96236032 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
96235981 TTTATATATT
*
96235991 TTTTATAATTTTTATAAAAAAA
1 TTTTAAAATTTTTAT-AAAAAA
96236013 TTTTAAAATTTTTACTAAAA
1 TTTTAAAATTTTTA-TAAAA
96236033 CTTTTTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (21 bp):
TTTTAAAATTTTTATAAAAAA
Found at i:96239634 original size:36 final size:36
Alignment explanation
Indices: 96239464--96239714 Score: 213
Period size: 36 Copynumber: 7.0 Consensus size: 36
96239454 GAAAGCAGCA
* * *
96239464 TGGTGTTAGCAATGGTA-TGGGGCCAGGCCGGCCTGG
1 TGGTGCTAACAATGGTACT-GGGCCTGGCCGGCCTGG
* *
96239500 TGGTGTTAGCAATGGTA-TGGGGCCTGGCCGGCCTGG
1 TGGTGCTAACAATGGTACT-GGGCCTGGCCGGCCTGG
* * * *
96239536 TGGTGCTAGCAATGGTACCGGGCCTAGCCGACCTGG
1 TGGTGCTAACAATGGTACTGGGCCTGGCCGGCCTGG
*
96239572 TGGTG-TAAGCAATGGTACTGGGCCTGGTCGGCCTGG
1 TGGTGCTAA-CAATGGTACTGGGCCTGGCCGGCCTGG
* * ** *
96239608 TGGTGCTAACAGTGGTTCTGTTCCTGGCCGGGCTGG
1 TGGTGCTAACAATGGTACTGGGCCTGGCCGGCCTGG
* * * * * *
96239644 TGCTGCTAGCAATGGTGCAGGGTCTGGCCGGCCTGT
1 TGGTGCTAACAATGGTACTGGGCCTGGCCGGCCTGG
* * * *
96239680 TGGCGC-AAGCAATGGTGCAGGGTCTGGCCGGCCTG
1 TGGTGCTAA-CAATGGTACTGGGCCTGGCCGGCCTG
96239715 CTGGCCCTAA
Statistics
Matches: 182, Mismatches: 29, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
35 3 0.02
36 176 0.97
37 3 0.02
ACGTcount: A:0.13, C:0.23, G:0.41, T:0.24
Consensus pattern (36 bp):
TGGTGCTAACAATGGTACTGGGCCTGGCCGGCCTGG
Found at i:96239651 original size:108 final size:108
Alignment explanation
Indices: 96239464--96239714 Score: 272
Period size: 108 Copynumber: 2.3 Consensus size: 108
96239454 GAAAGCAGCA
* * * *
96239464 TGGTGTTAGCAATGGTA-TGGGGCCAGGCCGGCCTGGTGGTGTTAGCAATGGTATGGGGCCTGGC
1 TGGTGTAAGCAATGGTACT-GGGCCTGGCCGGCCTGGTGGTGCTAACAATGGTATGGGGCCTGGC
* *
96239528 CGGCCTGGTGGTGCTAGCAATGGTACCGGGCCTAGCCGACCTGG
65 CGGCCTGGTGCTGCTAGCAATGGTACAGGGCCTAGCCGACCTGG
* * * **
96239572 TGGTGTAAGCAATGGTACTGGGCCTGGTCGGCCTGGTGGTGCTAACAGTGGT-TCTGTTCCTGGC
1 TGGTGTAAGCAATGGTACTGGGCCTGGCCGGCCTGGTGGTGCTAACAATGGTAT-GGGGCCTGGC
* * * * * *
96239636 CGGGCTGGTGCTGCTAGCAATGGTGCAGGGTCTGGCCGGCCTGT
65 CGGCCTGGTGCTGCTAGCAATGGTACAGGGCCTAGCCGACCTGG
* * * * *
96239680 TGGCGCAAGCAATGGTGCAGGGTCTGGCCGGCCTG
1 TGGTGTAAGCAATGGTACTGGGCCTGGCCGGCCTG
96239715 CTGGCCCTAA
Statistics
Matches: 118, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
107 1 0.01
108 116 0.98
109 1 0.01
ACGTcount: A:0.13, C:0.23, G:0.41, T:0.24
Consensus pattern (108 bp):
TGGTGTAAGCAATGGTACTGGGCCTGGCCGGCCTGGTGGTGCTAACAATGGTATGGGGCCTGGCC
GGCCTGGTGCTGCTAGCAATGGTACAGGGCCTAGCCGACCTGG
Found at i:96241612 original size:26 final size:26
Alignment explanation
Indices: 96241590--96241645 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
96241580 TTTAATTCAT
96241590 CCATTCTAAATTTAGCACCAATTCTA
1 CCATTCTAAATTTAGCACCAATTCTA
*
96241616 CCATTCTAAGTTTAGCACCAATTCTA
1 CCATTCTAAATTTAGCACCAATTCTA
96241642 CCAT
1 CCAT
96241646 GCATATCATG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (26 bp):
CCATTCTAAATTTAGCACCAATTCTA
Found at i:96243748 original size:29 final size:29
Alignment explanation
Indices: 96243715--96243783 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
96243705 ATTATTTAAT
* * *
96243715 TAATAACTATCTTTTTAATTTAATAAAAA
1 TAATAAATATCTATTCAATTTAATAAAAA
*
96243744 TAATAAATATCTATTCACTTTAATAAAAA
1 TAATAAATATCTATTCAATTTAATAAAAA
96243773 GTAAATAAATA
1 -T-AATAAATA
96243784 AATATGTTAC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 25 0.74
30 1 0.03
31 8 0.24
ACGTcount: A:0.52, C:0.07, G:0.01, T:0.39
Consensus pattern (29 bp):
TAATAAATATCTATTCAATTTAATAAAAA
Found at i:96249652 original size:47 final size:48
Alignment explanation
Indices: 96249601--96249693 Score: 111
Period size: 48 Copynumber: 2.0 Consensus size: 48
96249591 TAAGACAGTG
*
96249601 TCAAGACATGGCATCGACA-T-TGATTAAGGACT-CCATGTAAGACCACA
1 TCAAGACATGGCATCGACACTAAGA-TAAGGA-TACCATGTAAGACCACA
** *
96249648 TCAAGATGTGGCATTGACACTAAGATAAGGATACCATGTAAGACCA
1 TCAAGACATGGCATCGACACTAAGATAAGGATACCATGTAAGACCA
96249694 TGTTTGGAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
47 17 0.44
48 20 0.51
49 2 0.05
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (48 bp):
TCAAGACATGGCATCGACACTAAGATAAGGATACCATGTAAGACCACA
Found at i:96249728 original size:47 final size:47
Alignment explanation
Indices: 96249668--96249789 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
96249658 GCATTGACAC
*
96249668 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
*
96249715 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
1 TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
*
96249762 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGATAAGGATACCATGTAAGACCATG
96249790 CCAAGGCATG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (47 bp):
TAAGATAAGGATACCATGTAAGACCATGTTTGGAACATGACATTTGG
Found at i:96249833 original size:54 final size:53
Alignment explanation
Indices: 96249768--96249964 Score: 195
Period size: 54 Copynumber: 3.7 Consensus size: 53
96249758 TTGGTAAGAT
* * * *
96249768 AAGGATATCATGTAAGACCATGCCAAGGCATGTCATTGATAAGTTCTATAAGG
1 AAGGAAATCATGTAAGACCATGCCAAGACATGACATTGATGAGTTCTATAAGG
*
96249821 CAAGGAAATCATGTAAGACCATGTCAAGACATGACATTGATGAGTTACTATAAGG
1 -AAGGAAATCATGTAAGACCATGCCAAGACATGACATTGATGAGTT-CTATAAGG
* * *
96249876 AA--AACATCCCATGTAAAACCATGCCAAGGCATGAAATT-AGTGAGTTC-ATAAGG
1 AAGGAA-AT--CATGTAAGACCATGCCAAGACATGACATTGA-TGAGTTCTATAAGG
* * * *
96249929 TAAGGATACCACGTAAGACCATGTCAAGACATGACA
1 -AAGGAAATCATGTAAGACCATGCCAAGACATGACA
96249965 ACGGTAAGTT
Statistics
Matches: 119, Mismatches: 16, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
52 2 0.02
53 30 0.25
54 46 0.39
55 40 0.34
56 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.22
Consensus pattern (53 bp):
AAGGAAATCATGTAAGACCATGCCAAGACATGACATTGATGAGTTCTATAAGG
Found at i:96249994 original size:108 final size:109
Alignment explanation
Indices: 96249776--96249986 Score: 266
Period size: 108 Copynumber: 2.0 Consensus size: 109
96249766 ATAAGGATAT
* ** * *
96249776 CATGTAAGACCATGCCAAGGCATGTCATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACC
1 CATGTAAAACCATGCCAAGGCATGAAATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
** * * *
96249841 ATGTCAAGACATGACATTGATGAGTTACTATAAGGAAAACATCC
66 ATGTCAAGACATGACAACGATAAGTTACAAAAAGGAAAACATCC
* * *
96249885 CATGTAAAACCATGCCAAGGCATGAAATT-AGTGAGTTC-ATAAGGTAAGGATACCACGTAAGAC
1 CATGTAAAACCATGCCAAGGCATGAAATTGA-TAAGTTCTATAAGGCAAGGAAACCACGTAAGAC
*
96249948 CATGTCAAGACATGACAACGGTAAGTT-CAAAAAGGAAAA
65 CATGTCAAGACATGACAACGATAAGTTACAAAAAGGAAAA
96249987 GGTTCCCAAG
Statistics
Matches: 87, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
107 10 0.11
108 45 0.52
109 32 0.37
ACGTcount: A:0.41, C:0.17, G:0.21, T:0.21
Consensus pattern (109 bp):
CATGTAAAACCATGCCAAGGCATGAAATTGATAAGTTCTATAAGGCAAGGAAACCACGTAAGACC
ATGTCAAGACATGACAACGATAAGTTACAAAAAGGAAAACATCC
Found at i:96250111 original size:17 final size:16
Alignment explanation
Indices: 96250078--96250111 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
96250068 CTTATTTAAT
*
96250078 ATTGAGATTGTAAGTA
1 ATTGAGATTATAAGTA
96250094 ATTGAGATTATCAAGTA
1 ATTGAGATTAT-AAGTA
96250111 A
1 A
96250112 GTGATGAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.41, C:0.03, G:0.21, T:0.35
Consensus pattern (16 bp):
ATTGAGATTATAAGTA
Found at i:96252377 original size:25 final size:24
Alignment explanation
Indices: 96252340--96252392 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
96252330 AAGTTTAAGT
*
96252340 GAGCCATTTCAGGAAGCTCACAAA
1 GAGCCATATCAGGAAGCTCACAAA
* *
96252364 GAGCCTATATCAGGATGCTCATAAA
1 GAGCC-ATATCAGGAAGCTCACAAA
96252389 GAGC
1 GAGC
96252393 TACATTTGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.19
Consensus pattern (24 bp):
GAGCCATATCAGGAAGCTCACAAA
Found at i:96253868 original size:25 final size:25
Alignment explanation
Indices: 96253827--96253966 Score: 85
Period size: 25 Copynumber: 5.6 Consensus size: 25
96253817 ACATACCCCA
* *
96253827 GCTCTTACGA-ATGTCCCAATATTTG
1 GCTCTTACGAGCT-TCCCAATATATG
* *
96253852 GCTCTCACGAGCTTCCCATTATATG
1 GCTCTTACGAGCTTCCCAATATATG
* * *
96253877 GTTCTTGCGAGCTTCCCGAT-TATG
1 GCTCTTACGAGCTTCCCAATATATG
* **
96253901 GCTCTTATGAGCTTCCTGATA-ATTG
1 GCTCTTACGAGCTTCCCAATATA-TG
* *
96253926 GCTCTT-CGGAGCTTCTCGATA-ATTG
1 GCTCTTAC-GAGCTTCCCAATATA-TG
96253951 GCTCTT-CGAAGCTTCC
1 GCTCTTACG-AGCTTCC
96253967 TGATTAATAG
Statistics
Matches: 93, Mismatches: 17, Indels: 10
0.77 0.14 0.08
Matches are distributed among these distances:
24 22 0.24
25 70 0.75
26 1 0.01
ACGTcount: A:0.18, C:0.26, G:0.20, T:0.36
Consensus pattern (25 bp):
GCTCTTACGAGCTTCCCAATATATG
Found at i:96253979 original size:25 final size:24
Alignment explanation
Indices: 96253886--96254067 Score: 122
Period size: 25 Copynumber: 7.3 Consensus size: 24
96253876 GGTTCTTGCG
* * *
96253886 AGCTTCCCGATTATGGCTCTTATG-
1 AGCTTCCTGATAATGGCTCTT-CGA
*
96253910 AGCTTCCTGATAATTGGCTCTTCGG
1 AGCTTCCTGATAA-TGGCTCTTCGA
96253935 AGCTT-CTCGATAATTGGCTCTTCGA
1 AGCTTCCT-GATAA-TGGCTCTTCGA
* *
96253960 AGCTTCCTGATTAATAGCTCTCCGA
1 AGCTTCCTGA-TAATGGCTCTTCGA
* *
96253985 AGCTTCCTGATATTTGCTCGCTT-GA
1 AGCTTCCTGATAATGGCT--CTTCGA
*
96254010 A-CTTCCTGATTAAAGGCTCTTTC-A
1 AGCTTCCTGA-TAATGGCTC-TTCGA
* *
96254034 CGAGCTTCCTGATTAATGGGTCTTTGA
1 --AGCTTCCTGA-TAATGGCTCTTCGA
96254061 AGCTTCC
1 AGCTTCC
96254068 CAATATTGGC
Statistics
Matches: 129, Mismatches: 15, Indels: 27
0.75 0.09 0.16
Matches are distributed among these distances:
23 1 0.01
24 31 0.24
25 70 0.54
26 10 0.08
27 17 0.13
ACGTcount: A:0.19, C:0.25, G:0.20, T:0.36
Consensus pattern (24 bp):
AGCTTCCTGATAATGGCTCTTCGA
Found at i:96254101 original size:24 final size:25
Alignment explanation
Indices: 96254074--96254128 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 25
96254064 TTCCCAATAT
96254074 TGGCTCGTATGAGCTTTCCGTTA-A
1 TGGCTCGTATGAGCTTTCCGTTATA
* * *
96254098 TGGCTCTTTTGAGTTTTCCGTTATA
1 TGGCTCGTATGAGCTTTCCGTTATA
96254123 TGGCTC
1 TGGCTC
96254129 AAAAGAGTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 20 0.74
25 7 0.26
ACGTcount: A:0.13, C:0.20, G:0.24, T:0.44
Consensus pattern (25 bp):
TGGCTCGTATGAGCTTTCCGTTATA
Found at i:96256229 original size:100 final size:100
Alignment explanation
Indices: 96256049--96256277 Score: 280
Period size: 100 Copynumber: 2.3 Consensus size: 100
96256039 GGAGACATGA
* ** * *
96256049 CCGTGTAGAGTCGTCACACGCCCGTGTGGGACACATGCTTGTAAGGCCAAGTCGGGTGGCACCAA
1 CCGTGT-GAGTCGTCACACGCCCGTGTGGGACACATACCCGTAAGGCCAAGCCGCGTGGCACCAA
** * *
96256114 AATTCACCTGAAACCCTAATTTCTAAAAA-CACACGG
65 AATTCACCCAAAACCCTAA-TTCCAAAAAGCACACAG
* ** * *
96256150 CTGTGTGAGTCGTCACACGCCCGTGTGGGACACATACCCGTGTGGCCAGGCCGCGTGGTACCAAA
1 CCGTGTGAGTCGTCACACGCCCGTGTGGGACACATACCCGTAAGGCCAAGCCGCGTGGCACCAAA
*
96256215 ATTCACCCAAAACCCTAATTCCAAAAAGCATACAG
66 ATTCACCCAAAACCCTAATTCCAAAAAGCACACAG
* *
96256250 CCATGTGAGTCGTCATACGCCCGTGTGG
1 CCGTGTGAGTCGTCACACGCCCGTGTGG
96256278 CCATCGGAGA
Statistics
Matches: 109, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
99 8 0.07
100 96 0.88
101 5 0.05
ACGTcount: A:0.27, C:0.29, G:0.24, T:0.20
Consensus pattern (100 bp):
CCGTGTGAGTCGTCACACGCCCGTGTGGGACACATACCCGTAAGGCCAAGCCGCGTGGCACCAAA
ATTCACCCAAAACCCTAATTCCAAAAAGCACACAG
Found at i:96260981 original size:100 final size:98
Alignment explanation
Indices: 96260867--96261086 Score: 260
Period size: 100 Copynumber: 2.2 Consensus size: 98
96260857 CGGTCGTATA
** **
96260867 GAGTCGTCACACGCCCGTGTGGGACACATGCCTTTGTGGCCAGGCCGGGTGGTACCAAAATTCAC
1 GAGTCGTCACACGCCCGTGTGGGACACATGCCCGTGTGGCCAGGCCGGGTGACACCAAAATTCA-
* * **
96260932 CCGAAACCCTAATTCCCAAAAGCACAGAGTCGTGT
65 -CAAAACCCTAATTCCCAAAAGCACACAACCGTGT
* * * * **
96260967 GAGTCATCACACGCCTGTGTGGGACATATGCCCGTGTGGCTAGGCCTTGTGACACCAAAATTCAC
1 GAGTCGTCACACGCCCGTGTGGGACACATGCCCGTGTGGCCAGGCCGGGTGACACCAAAATTCAC
* *
96261032 AAAACCTTAATTCCTAAAAGCACACAACCGTGT
66 AAAACCCTAATTCCCAAAAGCACACAACCGTGT
* *
96261065 GAGCCGTCACACACCCGTGTGG
1 GAGTCGTCACACGCCCGTGTGG
96261087 CCGTCGGAGA
Statistics
Matches: 100, Mismatches: 20, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
98 46 0.46
100 54 0.54
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (98 bp):
GAGTCGTCACACGCCCGTGTGGGACACATGCCCGTGTGGCCAGGCCGGGTGACACCAAAATTCAC
AAAACCCTAATTCCCAAAAGCACACAACCGTGT
Found at i:96261091 original size:19 final size:20
Alignment explanation
Indices: 96261052--96261091 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
96261042 TTCCTAAAAG
96261052 CACACAACCGTGTGAGCCGT
1 CACACAACCGTGTGAGCCGT
*
96261072 CACACACCCGTGTG-GCCGT
1 CACACAACCGTGTGAGCCGT
96261091 C
1 C
96261092 GGAGAGGTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.20, C:0.40, G:0.25, T:0.15
Consensus pattern (20 bp):
CACACAACCGTGTGAGCCGT
Found at i:96264453 original size:59 final size:58
Alignment explanation
Indices: 96264353--96264467 Score: 137
Period size: 59 Copynumber: 2.0 Consensus size: 58
96264343 CTTAGTACCC
* * * *
96264353 GAACTTAGCAATTGTTCCAAGATTAGGAGTTGAATT-TTTTTTTGCCTAAGTTAATCTAT
1 GAACTTAACAATTGTTCCAACATTAGGAGTTAAATTGTTTTTAT-CC-AAGTTAATCTAT
96264412 GAACTTAACAATTGTTCTC-ACATTAGG-GTTTAAATTGTTTTTATCCAAGTTAATCT
1 GAACTTAACAATTGTTC-CAACATTAGGAG-TTAAATTGTTTTTATCCAAGTTAATCT
96264468 TGATATTTCC
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
58 11 0.22
59 31 0.63
60 7 0.14
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.43
Consensus pattern (58 bp):
GAACTTAACAATTGTTCCAACATTAGGAGTTAAATTGTTTTTATCCAAGTTAATCTAT
Found at i:96265921 original size:20 final size:22
Alignment explanation
Indices: 96265884--96265924 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
96265874 TTTCCTCATT
*
96265884 TTTGTTGAATTTATAATATTTA
1 TTTGGTGAATTTATAATATTTA
96265906 TTTGGTGAA-TTA-AATATTT
1 TTTGGTGAATTTATAATATTT
96265925 TTTCATCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 7 0.39
21 3 0.17
22 8 0.44
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (22 bp):
TTTGGTGAATTTATAATATTTA
Found at i:96271740 original size:39 final size:39
Alignment explanation
Indices: 96271682--96271768 Score: 147
Period size: 39 Copynumber: 2.2 Consensus size: 39
96271672 TTGTGGAGGA
* *
96271682 GGGGTAAGTCATTATTTATATGACTTCAAGAAGTATCAT
1 GGGGTAAGTCATTAATTATATAACTTCAAGAAGTATCAT
*
96271721 GGGGTAAGTCTTTAATTATATAACTTCAAGAAGTATCAT
1 GGGGTAAGTCATTAATTATATAACTTCAAGAAGTATCAT
96271760 GGGGTAAGT
1 GGGGTAAGT
96271769 TTAAGTGTTC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.33, C:0.09, G:0.23, T:0.34
Consensus pattern (39 bp):
GGGGTAAGTCATTAATTATATAACTTCAAGAAGTATCAT
Found at i:96280522 original size:21 final size:21
Alignment explanation
Indices: 96280496--96280538 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
96280486 TCCTAAATAC
*
96280496 TATGCTTGTATTTATGATGTA
1 TATGCTTGTATTTACGATGTA
96280517 TATGCTTGTATTTACGATGTA
1 TATGCTTGTATTTACGATGTA
96280538 T
1 T
96280539 GATATTACTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.23, C:0.07, G:0.19, T:0.51
Consensus pattern (21 bp):
TATGCTTGTATTTACGATGTA
Found at i:96283945 original size:3 final size:3
Alignment explanation
Indices: 96283937--96283965 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
96283927 TCAATGAACG
96283937 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
96283966 AATTAGCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:96285233 original size:14 final size:14
Alignment explanation
Indices: 96285214--96285241 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
96285204 TTGACAATTT
96285214 AAATACGATGTATA
1 AAATACGATGTATA
96285228 AAATACGATGTATA
1 AAATACGATGTATA
96285242 GCCATCGACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.14, T:0.29
Consensus pattern (14 bp):
AAATACGATGTATA
Found at i:96286932 original size:29 final size:29
Alignment explanation
Indices: 96286876--96286932 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
96286866 TTTGACTTTT
* ** *
96286876 GAATTTAGTCATTCTACTTTTAATTTCAG
1 GAATTTAGGCATTCTACTTAAAAATTCAG
96286905 GAATTTAGGCATTCTACTTAAAAATTCA
1 GAATTTAGGCATTCTACTTAAAAATTCA
96286933 TATCTGATTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.42
Consensus pattern (29 bp):
GAATTTAGGCATTCTACTTAAAAATTCAG
Found at i:96291472 original size:19 final size:19
Alignment explanation
Indices: 96291437--96291480 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
96291427 TATATTTTTT
*
96291437 TAATTTTAAATATTTTAAA
1 TAATTTTAAATAATTTAAA
96291456 TAATTTTATAA-AATTTAAA
1 TAATTTTA-AATAATTTAAA
*
96291475 TTATTT
1 TAATTT
96291481 CTTGATATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 20 0.91
20 2 0.09
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TAATTTTAAATAATTTAAA
Found at i:96293486 original size:22 final size:22
Alignment explanation
Indices: 96293458--96293503 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
96293448 AATCCAATCA
96293458 AGCTATAGAAAGAAGTATATCC
1 AGCTATAGAAAGAAGTATATCC
**
96293480 AGCTATAGAGGGAAGTATATCC
1 AGCTATAGAAAGAAGTATATCC
96293502 AG
1 AG
96293504 ATGATTCAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.22
Consensus pattern (22 bp):
AGCTATAGAAAGAAGTATATCC
Found at i:96294631 original size:13 final size:14
Alignment explanation
Indices: 96294615--96294650 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
96294605 CAATCTCATA
96294615 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
96294628 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
96294641 TCTC-ATTTCA
1 TCTCAATTTCA
96294651 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:96294640 original size:18 final size:19
Alignment explanation
Indices: 96294602--96294642 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
96294592 TGGTTCATGT
96294602 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
96294621 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
96294639 TTTC
1 TTTC
96294643 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:96294896 original size:41 final size:38
Alignment explanation
Indices: 96294758--96294899 Score: 103
Period size: 39 Copynumber: 3.7 Consensus size: 38
96294748 CAAACACACC
* * * * *
96294758 AATA-TGG-CACCCAGTGCCTCATCGGATAGTTCGAAGC
1 AATATTGGACACCCAGTGTCTCATCGAAAAG-CCGAAGA
* *
96294795 AATATTTGACACCCAGTGTCTCATCGGCAAAGCCGAAGA
1 AATATTGGACACCCAGTGTCTCATC-GAAAAGCCGAAGA
* * ** *
96294834 AA-GTTGG-TACCCAGTACCTCATCGAAACTATCCGAAGA
1 AATATTGGACACCCAGTGTCTCATCGAAA--AGCCGAAGA
96294872 AATATTGGGACACCCAGTGTCTCATCGA
1 AATATT-GGACACCCAGTGTCTCATCGA
96294900 CTCGAGGTCG
Statistics
Matches: 80, Mismatches: 17, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
36 3 0.04
37 17 0.21
38 15 0.19
39 24 0.30
40 6 0.08
41 15 0.19
ACGTcount: A:0.31, C:0.26, G:0.21, T:0.22
Consensus pattern (38 bp):
AATATTGGACACCCAGTGTCTCATCGAAAAGCCGAAGA
Found at i:96295164 original size:18 final size:19
Alignment explanation
Indices: 96295138--96295176 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
96295128 TTTCAATTCA
96295138 ATTCAAATAATCAATATAT
1 ATTCAAATAATCAATATAT
*
96295157 ATTC-AATATTCAATATAT
1 ATTCAAATAATCAATATAT
96295175 AT
1 AT
96295177 ATCTATATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.49, C:0.10, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTCAAATAATCAATATAT
Found at i:96296496 original size:5 final size:5
Alignment explanation
Indices: 96296486--96296542 Score: 62
Period size: 5 Copynumber: 11.0 Consensus size: 5
96296476 TTACTTATTT
* *
96296486 ATATA ATATAA TATATA ATATA ATATA CTATA ATATA ATAATA ATTTA
1 ATATA ATAT-A -ATATA ATATA ATATA ATATA ATATA AT-ATA ATATA
96296534 ATAT- ATATA
1 ATATA ATATA
96296543 TTTTAACACA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
4 4 0.09
5 29 0.66
6 7 0.16
7 4 0.09
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:96296502 original size:12 final size:12
Alignment explanation
Indices: 96296485--96296540 Score: 69
Period size: 12 Copynumber: 4.5 Consensus size: 12
96296475 TTTACTTATT
96296485 TATATAATATAA
1 TATATAATATAA
96296497 TATATAATATAATA
1 TATATAATAT-A-A
96296511 TACTATAATATAA
1 TA-TATAATATAA
*
96296524 TA-ATAATTTAA
1 TATATAATATAA
96296535 TATATA
1 TATATA
96296541 TATTTTAACA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
11 10 0.26
12 13 0.33
13 4 0.10
14 4 0.10
15 8 0.21
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (12 bp):
TATATAATATAA
Found at i:96296555 original size:26 final size:26
Alignment explanation
Indices: 96296487--96296542 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
96296477 TACTTATTTA
*
96296487 TATAATATAATATATAATATAATATAC
1 TATAATATAACA-ATAATATAATATAC
* *
96296514 TATAATATAATAATAATTTAATATA-
1 TATAATATAACAATAATATAATATAC
96296539 TATA
1 TATA
96296543 TTTTAACACA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 4 0.14
26 12 0.43
27 12 0.43
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (26 bp):
TATAATATAACAATAATATAATATAC
Found at i:96307700 original size:25 final size:25
Alignment explanation
Indices: 96307670--96307719 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
96307660 CCACAACCAT
96307670 TCAAGAATTTTTACTTACCAATTTG
1 TCAAGAATTTTTACTTACCAATTTG
96307695 TCAAGAATTTTTACTTACCAATTTG
1 TCAAGAATTTTTACTTACCAATTTG
96307720 ACTAATTACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.44
Consensus pattern (25 bp):
TCAAGAATTTTTACTTACCAATTTG
Found at i:96308488 original size:26 final size:25
Alignment explanation
Indices: 96308459--96308517 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 25
96308449 TTCATATTCA
96308459 GGAATGCT-TATACGAGCACATA-AACG
1 GGAA-GCTCTATA-GAGC-CATATAACG
*
96308485 GGAAGCTCTTTAGAGCCATATAACG
1 GGAAGCTCTATAGAGCCATATAACG
96308510 GGAAGCTC
1 GGAAGCTC
96308518 ATGAAAGAGC
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
24 4 0.13
25 19 0.63
26 7 0.23
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.20
Consensus pattern (25 bp):
GGAAGCTCTATAGAGCCATATAACG
Found at i:96308627 original size:25 final size:24
Alignment explanation
Indices: 96308572--96308702 Score: 72
Period size: 25 Copynumber: 5.3 Consensus size: 24
96308562 AAAGCTCTGG
96308572 AGAGCCATTAATCAGGAAGCTCATA
1 AGAGCCATT-ATCAGGAAGCTCATA
* *
96308597 AAAGCCAGTTATCGGGAAGCTCCA-A
1 AGAGCCA-TTATCAGGAAGCT-CATA
*
96308622 AGAGCCAATTATCTA-GAAGCTTATA
1 AGAGCC-ATTATC-AGGAAGCTCATA
* * * *
96308647 AGAGTCA-TAACCGAGAAGCTCACA
1 AGAGCCATTATCAG-GAAGCTCATA
* * *
96308671 AGAACCA-TATAACGAGAAGCTTATA
1 AGAGCCATTATCA-G-GAAGCTCATA
96308696 AGAGCCA
1 AGAGCCA
96308703 AATATCGGGA
Statistics
Matches: 80, Mismatches: 18, Indels: 16
0.70 0.16 0.14
Matches are distributed among these distances:
23 3 0.04
24 17 0.21
25 55 0.69
26 5 0.06
ACGTcount: A:0.41, C:0.21, G:0.20, T:0.18
Consensus pattern (24 bp):
AGAGCCATTATCAGGAAGCTCATA
Found at i:96316266 original size:24 final size:24
Alignment explanation
Indices: 96316218--96316307 Score: 101
Period size: 24 Copynumber: 3.7 Consensus size: 24
96316208 CATTAATCAT
* *
96316218 GAAGCTCATAAGAGCTAGT-ATCGG
1 GAAGCTCATAAGAGCCA-TAAACGG
96316242 GAAGCTCATAAGAGCCATAAACGG
1 GAAGCTCATAAGAGCCATAAACGG
*** *
96316266 GAAGCTTGCAAGAACCATATAACGG
1 GAAGCTCATAAGAGCCATA-AACGG
96316291 GAAGCTCATAAGAGCCA
1 GAAGCTCATAAGAGCCA
96316308 AATATTTGTT
Statistics
Matches: 54, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
23 1 0.02
24 35 0.65
25 18 0.33
ACGTcount: A:0.39, C:0.20, G:0.26, T:0.16
Consensus pattern (24 bp):
GAAGCTCATAAGAGCCATAAACGG
Found at i:96318820 original size:14 final size:14
Alignment explanation
Indices: 96318783--96318810 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
96318773 AAAATACTAC
96318783 CTTAGAAAATGAAA
1 CTTAGAAAATGAAA
96318797 CTTAGAAAATGAAA
1 CTTAGAAAATGAAA
96318811 TTTAAGAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.14, T:0.21
Consensus pattern (14 bp):
CTTAGAAAATGAAA
Done.