Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 284 of 295
Found at i:96543415 original size:22 final size:23
Alignment explanation
Indices: 96543378--96543420 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
96543368 TCGTCTTCCC
*
96543378 CTTTCTTTGTTTTCTTTTTTGTT
1 CTTTCTTTCTTTTCTTTTTTGTT
96543401 CTTTC-TTCTTTTCTTTTTTG
1 CTTTCTTTCTTTTCTTTTTTG
96543421 AAAAAGGTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.00, C:0.16, G:0.07, T:0.77
Consensus pattern (23 bp):
CTTTCTTTCTTTTCTTTTTTGTT
Found at i:96551734 original size:10 final size:11
Alignment explanation
Indices: 96551710--96551734 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
96551700 TTGTACCCCC
96551710 AAAATGTTTGA
1 AAAATGTTTGA
96551721 AAAATGTTTGA
1 AAAATGTTTGA
96551732 AAA
1 AAA
96551735 GATAGTCAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.16, T:0.32
Consensus pattern (11 bp):
AAAATGTTTGA
Found at i:96566135 original size:47 final size:47
Alignment explanation
Indices: 96566066--96566158 Score: 186
Period size: 47 Copynumber: 2.0 Consensus size: 47
96566056 AAAGGATCAA
96566066 CTTGAACTCATCGATAGGGAGGTTGAATTGACATTTTAGAAATTGTC
1 CTTGAACTCATCGATAGGGAGGTTGAATTGACATTTTAGAAATTGTC
96566113 CTTGAACTCATCGATAGGGAGGTTGAATTGACATTTTAGAAATTGT
1 CTTGAACTCATCGATAGGGAGGTTGAATTGACATTTTAGAAATTGT
96566159 GGTGGAAGCA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.30, C:0.12, G:0.24, T:0.34
Consensus pattern (47 bp):
CTTGAACTCATCGATAGGGAGGTTGAATTGACATTTTAGAAATTGTC
Found at i:96566728 original size:15 final size:16
Alignment explanation
Indices: 96566698--96566728 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
96566688 GAGCAGGAAT
96566698 ATCGATATCTTACCAG
1 ATCGATATCTTACCAG
96566714 ATCGATATC-TACCAG
1 ATCGATATCTTACCAG
96566729 GAGTTGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (16 bp):
ATCGATATCTTACCAG
Found at i:96574867 original size:26 final size:26
Alignment explanation
Indices: 96574836--96574885 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
96574826 TTTACTCTTT
96574836 TAATAATTATATATACAAGAGTAAAA
1 TAATAATTATATATACAAGAGTAAAA
* **
96574862 TAATAATTTTATATAGTAGAGTAA
1 TAATAATTATATATACAAGAGTAA
96574886 GTTGAGATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.52, C:0.02, G:0.10, T:0.36
Consensus pattern (26 bp):
TAATAATTATATATACAAGAGTAAAA
Found at i:96582241 original size:14 final size:15
Alignment explanation
Indices: 96582222--96582254 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
96582212 TATAAATCAC
96582222 TTTTAATC-TAAATT
1 TTTTAATCATAAATT
*
96582236 TTTTAATCATAACTT
1 TTTTAATCATAAATT
96582251 TTTT
1 TTTT
96582255 TTAATTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.30, C:0.09, G:0.00, T:0.61
Consensus pattern (15 bp):
TTTTAATCATAAATT
Found at i:96583660 original size:21 final size:22
Alignment explanation
Indices: 96583634--96583696 Score: 67
Period size: 21 Copynumber: 2.9 Consensus size: 22
96583624 CATATTAATG
*
96583634 TTTAAAATTTATTCAAA-TTAA
1 TTTAAAATTTACTCAAATTTAA
**
96583655 TTTAAAAAATACTCAAATTTAA
1 TTTAAAATTTACTCAAATTTAA
96583677 TTTAATAATTATACT-AAATT
1 TTTAA-AATT-TACTCAAATT
96583697 CAATCCCAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
21 14 0.41
22 9 0.26
23 7 0.21
24 4 0.12
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.44
Consensus pattern (22 bp):
TTTAAAATTTACTCAAATTTAA
Found at i:96591272 original size:31 final size:31
Alignment explanation
Indices: 96591230--96591291 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
96591220 ATTAACATCC
*
96591230 TAATGATTTAAATAAAAACTTTCAAATAGTT
1 TAATGACTTAAATAAAAACTTTCAAATAGTT
* *
96591261 TAATGACTTAAATGAAAGCTTTCAAATAGTT
1 TAATGACTTAAATAAAAACTTTCAAATAGTT
96591292 CAGTGAGCAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (31 bp):
TAATGACTTAAATAAAAACTTTCAAATAGTT
Found at i:96593959 original size:13 final size:13
Alignment explanation
Indices: 96593936--96593969 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
96593926 TGTTGAGTGC
96593936 CAAAAAGATAAAAA
1 CAAAAA-ATAAAAA
96593950 CAAAAAATAAAAA
1 CAAAAAATAAAAA
*
96593963 TAAAAAA
1 CAAAAAA
96593970 AAATCTTATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.82, C:0.06, G:0.03, T:0.09
Consensus pattern (13 bp):
CAAAAAATAAAAA
Found at i:96594679 original size:3 final size:3
Alignment explanation
Indices: 96594671--96594698 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
96594661 CTCTAACTTG
96594671 CTT CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT C
96594699 AAATGAGTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (3 bp):
CTT
Found at i:96615082 original size:32 final size:32
Alignment explanation
Indices: 96615016--96615082 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
96615006 AACCTACTAG
* * *
96615016 AATAATAAAATTATAATTTAATCCTTATAAAA
1 AATAATAAAATTATAAATTAATACTAATAAAA
*
96615048 AATAATAAAATTATAAATTCATAC-AATAATAA
1 AATAATAAAATTATAAATTAATACTAATAA-AA
96615080 AAT
1 AAT
96615083 TACAATTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 4 0.13
32 26 0.87
ACGTcount: A:0.60, C:0.06, G:0.00, T:0.34
Consensus pattern (32 bp):
AATAATAAAATTATAAATTAATACTAATAAAA
Found at i:96618121 original size:13 final size:13
Alignment explanation
Indices: 96618089--96618126 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
96618079 AATTTTTAAA
96618089 ATTTTAAAAAATT
1 ATTTTAAAAAATT
*
96618102 A--TAAAAAAATT
1 ATTTTAAAAAATT
96618113 ATTTTAAAAAATT
1 ATTTTAAAAAATT
96618126 A
1 A
96618127 AAAATCATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
11 10 0.48
13 11 0.52
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
ATTTTAAAAAATT
Found at i:96618131 original size:20 final size:22
Alignment explanation
Indices: 96618105--96618158 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 22
96618095 AAAAATTATA
96618105 AAAAAATTATTTTAAA-AAATT
1 AAAAAATTATTTTAAATAAATT
* * *
96618126 -AAAAATCA-TTTAAATTATTT
1 AAAAAATTATTTTAAATAAATT
96618146 AAAAAATTATTTT
1 AAAAAATTATTTT
96618159 TTAATATTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
19 6 0.23
20 10 0.38
21 7 0.27
22 3 0.12
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAAAATTATTTTAAATAAATT
Found at i:96618733 original size:31 final size:31
Alignment explanation
Indices: 96618669--96618735 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
96618659 TTAATCCCTG
* * *
96618669 AACTTAACAATTATTTCCACATTATAGCTTA
1 AACTTAACAAGTATTTCCACATGATAGCCTA
*
96618700 AACTTGACAAGTATTTCCACATCGA-AGCCTA
1 AACTTAACAAGTATTTCCACAT-GATAGCCTA
96618731 AACTT
1 AACTT
96618736 TAATGTTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 30 0.97
32 1 0.03
ACGTcount: A:0.37, C:0.22, G:0.07, T:0.33
Consensus pattern (31 bp):
AACTTAACAAGTATTTCCACATGATAGCCTA
Found at i:96621201 original size:11 final size:11
Alignment explanation
Indices: 96621185--96621209 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
96621175 GCCAACTTTC
96621185 CTTAGCCCATG
1 CTTAGCCCATG
96621196 CTTAGCCCATG
1 CTTAGCCCATG
96621207 CTT
1 CTT
96621210 GCCTTCAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.36, G:0.16, T:0.32
Consensus pattern (11 bp):
CTTAGCCCATG
Found at i:96622467 original size:17 final size:17
Alignment explanation
Indices: 96622447--96622488 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
96622437 ATCTCAAAAT
96622447 AATAAATAAAAAAAT-AA
1 AATAAA-AAAAAAATAAA
*
96622464 AATAAAATAAAAATAAA
1 AATAAAAAAAAAATAAA
96622481 AATAAAAA
1 AATAAAAA
96622489 TTAGGTTGCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 7 0.32
17 15 0.68
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (17 bp):
AATAAAAAAAAAATAAA
Found at i:96622476 original size:6 final size:6
Alignment explanation
Indices: 96622442--96622489 Score: 62
Period size: 6 Copynumber: 7.8 Consensus size: 6
96622432 TTAATATCTC
*
96622442 AAAATA ATAAATA AAAAAA TAAAAT- AAAATA AAAATA AAAATA AAAAT
1 AAAATA A-AAATA AAAATA -AAAATA AAAATA AAAATA AAAATA AAAAT
96622490 TAGGTTGCCT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
5 5 0.14
6 22 0.59
7 10 0.27
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:96624401 original size:18 final size:19
Alignment explanation
Indices: 96624374--96624415 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
96624364 TGTTTTGAAG
*
96624374 ATTTTTTATTATGTTA-AT
1 ATTTTGTATTATGTTATAT
* *
96624392 ATTTTGTATTTTTTTATAT
1 ATTTTGTATTATGTTATAT
96624411 ATTTT
1 ATTTT
96624416 ATTTTCTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (19 bp):
ATTTTGTATTATGTTATAT
Found at i:96625830 original size:132 final size:131
Alignment explanation
Indices: 96625591--96625940 Score: 407
Period size: 132 Copynumber: 2.6 Consensus size: 131
96625581 AGTTTTATAA
* * * * * * * *
96625591 TCATTCATGTTTTCTAAAAAACCTTTAAAATGAAGGTGATGTTCGATATTTGGCAATTCGCGGAA
1 TCATTCATGTTTCCT-AAAAATCTTTAAAAAGAAGGTAATGTTCGATGTTTAGAAATTCGAGGAA
* * * * * *
96625656 TCGTGCCCTAACGTGCCGGGTTACAATTTCTTGTTTGCTCAAAATAATCAAATGT-CCCTTTGGA
65 TCGTGCCCT-ACGTGCTGGGTTACAATTTCCTGTTGGCTCAAAATAATCAAATATCCCCCTTAGA
96625720 ATT
129 ATT
* *
96625723 TCATTCATGTTTCCTAAAAAGTCTTTAAAACGAAGGTAATGTTCGATGTTTAGAAATTCGGGGAA
1 TCATTCATGTTTCCTAAAAA-TCTTTAAAAAGAAGGTAATGTTCGATGTTTAGAAATTCGAGGAA
* * * *
96625788 TCGTGCCCTATCGTGCTGGGTTGCGATTTCCTGTTGGTTCAAAATAATCGAATATCCCCCTTAGA
65 TCGTGCCCTA-CGTGCTGGGTTACAATTTCCTGTTGGCTCAAAATAATCAAATATCCCCCTTAGA
96625853 ATT
129 ATT
* * * * * *
96625856 TCACTCATGTTTCTTAAAAAT-TCTAAAAATAAGGCAATGCTCGATGTTTAGAAATTCGAGGAAT
1 TCATTCATGTTTCCTAAAAATCTTTAAAAAGAAGGTAATGTTCGATGTTTAGAAATTCGAGGAAT
96625920 CGTGCCCTACTGTGCTGGGTT
66 CGTGCCCTAC-GTGCTGGGTT
96625941 TCGGTTTTAC
Statistics
Matches: 188, Mismatches: 26, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
130 1 0.01
131 62 0.33
132 97 0.52
133 28 0.15
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (131 bp):
TCATTCATGTTTCCTAAAAATCTTTAAAAAGAAGGTAATGTTCGATGTTTAGAAATTCGAGGAAT
CGTGCCCTACGTGCTGGGTTACAATTTCCTGTTGGCTCAAAATAATCAAATATCCCCCTTAGAAT
T
Found at i:96629290 original size:20 final size:20
Alignment explanation
Indices: 96629247--96629290 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
96629237 TCCTTTGCAT
*
96629247 TCATGCATTTGCATTACAGC
1 TCATGCATTTGCATTAAAGC
*
96629267 TCAT-CATTATGCATTAAAGG
1 TCATGCATT-TGCATTAAAGC
96629287 TCAT
1 TCAT
96629291 AAAAAGTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (20 bp):
TCATGCATTTGCATTAAAGC
Found at i:96637440 original size:64 final size:64
Alignment explanation
Indices: 96637335--96637455 Score: 161
Period size: 64 Copynumber: 1.9 Consensus size: 64
96637325 ATCATTCATT
* * * *
96637335 TAGTTAGGAGCACTTGATTCACTTCGATCATAGCATTCTAATTATTGGACATAAGCACCACATC
1 TAGTTAGGAGCACTTGACTCACTTCGAGCATAGCATCCTAATTATTGGACACAAGCACCACATC
* * * * *
96637399 TAGTTAGGAGCATTTGACTCATTTTGAGCATGGCATCCTAATTATTTGACACAAGCA
1 TAGTTAGGAGCACTTGACTCACTTCGAGCATAGCATCCTAATTATTGGACACAAGCA
96637456 TAGATACGGG
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
64 48 1.00
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (64 bp):
TAGTTAGGAGCACTTGACTCACTTCGAGCATAGCATCCTAATTATTGGACACAAGCACCACATC
Found at i:96637893 original size:45 final size:44
Alignment explanation
Indices: 96637844--96637946 Score: 122
Period size: 44 Copynumber: 2.3 Consensus size: 44
96637834 TTCCCAGAAT
96637844 TTGCAGTGGAGCAGA-CTGAAGAT-ATCAGAT-CTTATCCCTCTGAAG
1 TTGCAGTGGAGCAGATC-GAAG-TCA-CA-ATCCTTATCCCTCTGAAG
* *
96637889 TTGCAGTGGAGTAGATCGAAGTCACAATCCTTATCTCTCTGAAG
1 TTGCAGTGGAGCAGATCGAAGTCACAATCCTTATCCCTCTGAAG
*
96637933 TTGCAGTAGAGCAG
1 TTGCAGTGGAGCAG
96637947 GATAAAAACA
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
43 2 0.04
44 29 0.57
45 19 0.37
46 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (44 bp):
TTGCAGTGGAGCAGATCGAAGTCACAATCCTTATCCCTCTGAAG
Found at i:96639458 original size:20 final size:20
Alignment explanation
Indices: 96639433--96639481 Score: 66
Period size: 18 Copynumber: 2.5 Consensus size: 20
96639423 TATTATGTGA
*
96639433 ATATTTTGTATTTTTTATAT
1 ATATTTTGTATTTTCTATAT
96639453 ATA-TTT-TATTTTCTATAT
1 ATATTTTGTATTTTCTATAT
96639471 ATATATTTGTA
1 ATAT-TTTGTA
96639482 CATGCATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 14 0.56
19 3 0.12
20 6 0.24
21 2 0.08
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (20 bp):
ATATTTTGTATTTTCTATAT
Found at i:96640872 original size:132 final size:131
Alignment explanation
Indices: 96640633--96640982 Score: 425
Period size: 132 Copynumber: 2.6 Consensus size: 131
96640623 AGTTTTATAA
* * * * * * *
96640633 TCATTCATGTTTTCTAAAAATCCTTTAAAATGAAGGTGATGTTCGATATTTGGCAATTCGCGGAA
1 TCATTCATGTTTCCTAAAAAT-CTTTAAAAAGAAGGTAATGTTCGATGTTTAGAAATTCGAGGAA
* * * * * *
96640698 TCGTGCCCTAACGTGCCGGGTTACAATTTCTTGTTTGCTCAAAATAATCAAATGT-CCCTTTGGA
65 TCGTGCCCT-ACGTGCTGGGTTACAATTTCCTGTTGGCTCAAAATAATCAAATATCCCCCTTAGA
96640762 ATT
129 ATT
* *
96640765 TCATTCATGTTTCCTAAAAAGTCTTTAAAACGAAGGTAATGTTCGATGTTTAGAAATTCGGGGAA
1 TCATTCATGTTTCCTAAAAA-TCTTTAAAAAGAAGGTAATGTTCGATGTTTAGAAATTCGAGGAA
* * * *
96640830 TCGTGCCCTATCGTGCTGGGTTGCGATTTCCTGTTGGTTCAAAATAATCGAATATCCCCCTTAGA
65 TCGTGCCCTA-CGTGCTGGGTTACAATTTCCTGTTGGCTCAAAATAATCAAATATCCCCCTTAGA
96640895 ATT
129 ATT
* * * * *
96640898 TCACTCATGTTTCTTAAAAAT-TCTAAAAATAAGGTAATGCTCGATGTTTAGAAATTCGAGGAAT
1 TCATTCATGTTTCCTAAAAATCTTTAAAAAGAAGGTAATGTTCGATGTTTAGAAATTCGAGGAAT
96640962 CGTGCCCTACTGTGCTGGGTT
66 CGTGCCCTAC-GTGCTGGGTT
96640983 TCGGTTTTAC
Statistics
Matches: 190, Mismatches: 24, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
130 1 0.01
131 58 0.31
132 102 0.54
133 29 0.15
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (131 bp):
TCATTCATGTTTCCTAAAAATCTTTAAAAAGAAGGTAATGTTCGATGTTTAGAAATTCGAGGAAT
CGTGCCCTACGTGCTGGGTTACAATTTCCTGTTGGCTCAAAATAATCAAATATCCCCCTTAGAAT
T
Found at i:96647273 original size:20 final size:20
Alignment explanation
Indices: 96647235--96647282 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
96647225 TAAATTCTAA
**
96647235 AAAGATAAATACATTTAATT
1 AAAGATAAATACAGATAATT
*
96647255 AAAGATAAATAGAGATAATT
1 AAAGATAAATACAGATAATT
96647275 AAA-ATAAA
1 AAAGATAAA
96647283 ATCCTAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.62, C:0.02, G:0.08, T:0.27
Consensus pattern (20 bp):
AAAGATAAATACAGATAATT
Found at i:96647293 original size:19 final size:18
Alignment explanation
Indices: 96647269--96647312 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
96647259 ATAAATAGAG
96647269 ATAATTAAAATAAAATCCTA
1 ATAATTAAAAT--AATCCTA
*
96647289 A-AATTTAAATAATCCTA
1 ATAATTAAAATAATCCTA
96647306 ATAATTA
1 ATAATTA
96647313 TCCTAATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 8 0.38
18 4 0.19
19 8 0.38
20 1 0.05
ACGTcount: A:0.57, C:0.09, G:0.00, T:0.34
Consensus pattern (18 bp):
ATAATTAAAATAATCCTA
Found at i:96648608 original size:48 final size:48
Alignment explanation
Indices: 96648541--96648637 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
96648531 CTAGATAAGA
96648541 TAGTCTCACATTCTACCCTTAATCCTATTATAGAACGTAATCAGATAT
1 TAGTCTCACATTCTACCCTTAATCCTATTATAGAACGTAATCAGATAT
*
96648589 TAGTCTCACATTCTTCCCTTAATCCTATTATAGAACGTAATCAGATAT
1 TAGTCTCACATTCTACCCTTAATCCTATTATAGAACGTAATCAGATAT
96648637 T
1 T
96648638 TAACGAATCA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.37
Consensus pattern (48 bp):
TAGTCTCACATTCTACCCTTAATCCTATTATAGAACGTAATCAGATAT
Found at i:96649506 original size:18 final size:18
Alignment explanation
Indices: 96649468--96649506 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
96649458 ATAAATTAAA
*
96649468 AATATTAACATTATGTAT
1 AATATTAACATTATATAT
*
96649486 AATATTAACATTATATTT
1 AATATTAACATTATATAT
96649504 AAT
1 AAT
96649507 TATTTAAGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (18 bp):
AATATTAACATTATATAT
Found at i:96656038 original size:30 final size:29
Alignment explanation
Indices: 96655995--96656052 Score: 89
Period size: 30 Copynumber: 2.0 Consensus size: 29
96655985 AAAGATAACA
96655995 AGAAAACCGAATAAAGAAATCCAAGATAG
1 AGAAAACCGAATAAAGAAATCCAAGATAG
* *
96656024 AGAAACCCAGAATAAAGAAATCTAAGATA
1 AGAAAACC-GAATAAAGAAATCCAAGATA
96656053 CGATACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 7 0.27
30 19 0.73
ACGTcount: A:0.59, C:0.14, G:0.16, T:0.12
Consensus pattern (29 bp):
AGAAAACCGAATAAAGAAATCCAAGATAG
Found at i:96656042 original size:15 final size:15
Alignment explanation
Indices: 96655994--96656043 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
96655984 TAAAGATAAC
96655994 AAGAAAACC-GAATA
1 AAGAAAACCAGAATA
*
96656008 AAGAAATCCA-AGATA
1 AAGAAAACCAGA-ATA
* *
96656023 GAGAAACCCAGAATA
1 AAGAAAACCAGAATA
96656038 AAGAAA
1 AAGAAA
96656044 TCTAAGATAC
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
14 9 0.31
15 19 0.66
16 1 0.03
ACGTcount: A:0.62, C:0.14, G:0.16, T:0.08
Consensus pattern (15 bp):
AAGAAAACCAGAATA
Found at i:96658456 original size:22 final size:23
Alignment explanation
Indices: 96658423--96658466 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
96658413 TAGTATGAAA
*
96658423 TTTCATTCTTATTTATA-AGATT
1 TTTCATTCTTATTCATAGAGATT
96658445 TTTCATGT-TTATTCATAGAGAT
1 TTTCAT-TCTTATTCATAGAGAT
96658467 ATAACTATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.27, C:0.09, G:0.09, T:0.55
Consensus pattern (23 bp):
TTTCATTCTTATTCATAGAGATT
Found at i:96669560 original size:46 final size:45
Alignment explanation
Indices: 96669417--96669547 Score: 122
Period size: 47 Copynumber: 2.8 Consensus size: 45
96669407 CCCGCCCATA
*
96669417 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATTTC
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCA--TACA-TTC
* * * * * * * *
96669465 A-CGAACTCAGACTCAACTCAACGAGTTCGAACATTCGCATCCA-TA
1 AGTGAACTCGGACTCAACTCAACGAGCTCG--GATGCCCATACATTC
96669510 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCA
1 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCA
96669548 AATATTCCAG
Statistics
Matches: 65, Mismatches: 15, Indels: 10
0.72 0.17 0.11
Matches are distributed among these distances:
44 5 0.08
45 2 0.03
46 25 0.38
47 28 0.43
48 1 0.02
49 4 0.06
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCATACATTC
Found at i:96675124 original size:46 final size:46
Alignment explanation
Indices: 96675057--96675232 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
96675047 TGTAACCCGC
*
96675057 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
* * * * *
96675103 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACG-TTCGCAT
* * * * * *
96675149 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
96675196 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
96675233 TGCCCAAATA
Statistics
Matches: 103, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
45 2 0.02
46 68 0.66
47 31 0.30
48 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
Found at i:96675177 original size:93 final size:93
Alignment explanation
Indices: 96675065--96675236 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
96675055 GCCCATAAGT
** *
96675065 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
96675130 CGAGCTCAGATGCCTAGTTACATTTCAC
66 CGAGCTCAGATGCCTAGTTACATTTCAC
*
96675158 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
96675223 CGAGCTCGGATGCC
66 CGAGCTCAGATGCC
96675237 CAAATATTCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCAGATGCCTAGTTACATTTCAC
Found at i:96677943 original size:20 final size:20
Alignment explanation
Indices: 96677914--96677951 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
96677904 TAAACTTTAT
* *
96677914 TTTTTTTTTATTTTTTTAGA
1 TTTTTATTTATTTATTTAGA
96677934 TTTTTATTTATTTATTTA
1 TTTTTATTTATTTATTTA
96677952 TTATTTGTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (20 bp):
TTTTTATTTATTTATTTAGA
Found at i:96694469 original size:18 final size:17
Alignment explanation
Indices: 96694432--96694470 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
96694422 TAATTAAAAA
* *
96694432 TTAATATTTTTAGCAAT
1 TTAATATTTTAAACAAT
96694449 TTAATATTTTAAACGAAT
1 TTAATATTTTAAAC-AAT
96694467 TTAA
1 TTAA
96694471 AAATTTACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (17 bp):
TTAATATTTTAAACAAT
Found at i:96695085 original size:19 final size:18
Alignment explanation
Indices: 96695061--96695097 Score: 65
Period size: 18 Copynumber: 2.0 Consensus size: 18
96695051 TACGAAACTA
96695061 AAAAAAATTCAAAAATTAT
1 AAAAAAATT-AAAAATTAT
96695080 AAAAAAATTAAAAATTAT
1 AAAAAAATTAAAAATTAT
96695098 TTTATATTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (18 bp):
AAAAAAATTAAAAATTAT
Found at i:96696633 original size:16 final size:15
Alignment explanation
Indices: 96696612--96696641 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
96696602 AGTAGTTAAT
96696612 TAAAAAGAAAAAAAAG
1 TAAAAA-AAAAAAAAG
96696628 TAAAAAAAAAAAAA
1 TAAAAAAAAAAAAA
96696642 AACCCCCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.87, C:0.00, G:0.07, T:0.07
Consensus pattern (15 bp):
TAAAAAAAAAAAAAG
Found at i:96696642 original size:16 final size:16
Alignment explanation
Indices: 96696612--96696642 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
96696602 AGTAGTTAAT
*
96696612 TAAAAAGAAAAAAAAG
1 TAAAAAAAAAAAAAAG
96696628 TAAAAAAAAAAAAAA
1 TAAAAAAAAAAAAAA
96696643 ACCCCCAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.87, C:0.00, G:0.06, T:0.06
Consensus pattern (16 bp):
TAAAAAAAAAAAAAAG
Found at i:96698877 original size:10 final size:10
Alignment explanation
Indices: 96698862--96698901 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
96698852 AAAGTGGAAT
*
96698862 TTTTTATGAA
1 TTTTTATAAA
96698872 TTTTTATAAA
1 TTTTTATAAA
96698882 TTTTT-TAAAA
1 TTTTTAT-AAA
96698892 TTTTTATAAA
1 TTTTTATAAA
96698902 GTACATTTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
9 1 0.04
10 25 0.93
11 1 0.04
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (10 bp):
TTTTTATAAA
Found at i:96698893 original size:20 final size:21
Alignment explanation
Indices: 96698859--96698901 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
96698849 ACTAAAGTGG
*
96698859 AATTTTTTATGAATTTTTATA
1 AATTTTTTATAAATTTTTATA
96698880 AATTTTTTA-AAATTTTTATA
1 AATTTTTTATAAATTTTTATA
96698900 AA
1 AA
96698902 GTACATTTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 12 0.57
21 9 0.43
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (21 bp):
AATTTTTTATAAATTTTTATA
Found at i:96700602 original size:125 final size:126
Alignment explanation
Indices: 96700433--96700699 Score: 428
Period size: 125 Copynumber: 2.1 Consensus size: 126
96700423 GGTTTATGAT
*
96700433 TTTTCTACAGTAGTTCCTGAAAAAATAATTTTAAGAAGACGTTTCTGAACAAATAGTGTCAAAAA
1 TTTTCTACAGTAGTTCCTGAAAAAATAATTTTAAGAAGACGTTTCTGAAAAAATAGTGTCAAAAA
*
96700498 CACTTCAAGCAGGATGCAATGTCAGCAAAATTTCTAAAAAAAGCTCCCACGTGGACGCTCA
66 CACTTCAAGCAGGATGCAATATCAGCAAAATTTCTAAAAAAAGCTCCCACGTGGACGCTCA
*
96700559 TTTTCTACAGTAGTTCCTG-AAAAATAATTTTGAGAAGACGTTTCTGAAAAAATAGTGTCAAAAA
1 TTTTCTACAGTAGTTCCTGAAAAAATAATTTTAAGAAGACGTTTCTGAAAAAATAGTGTCAAAAA
** * * * * * *
96700623 TGCTTCAAGCAGGATGCAATATCAGCAAAATTTTTGAAAAAAGTTTCCACGTGGACTCTCT
66 CACTTCAAGCAGGATGCAATATCAGCAAAATTTCTAAAAAAAGCTCCCACGTGGACGCTCA
96700684 TTTTCTACAGTAGTTC
1 TTTTCTACAGTAGTTC
96700700 ATGCTTGGCA
Statistics
Matches: 130, Mismatches: 11, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
125 111 0.85
126 19 0.15
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30
Consensus pattern (126 bp):
TTTTCTACAGTAGTTCCTGAAAAAATAATTTTAAGAAGACGTTTCTGAAAAAATAGTGTCAAAAA
CACTTCAAGCAGGATGCAATATCAGCAAAATTTCTAAAAAAAGCTCCCACGTGGACGCTCA
Found at i:96702188 original size:22 final size:23
Alignment explanation
Indices: 96702163--96702208 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
96702153 CAACCAAATC
96702163 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
96702185 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
96702208 A
1 A
96702209 CGTCATCATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:96702214 original size:23 final size:22
Alignment explanation
Indices: 96702170--96702219 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 22
96702160 ATCAATTCAA
*
96702170 CATATTTTCAAGATAAATTCAT
1 CATATTTTCAAGATAAAGTCAT
*
96702192 GCATATTTAT-AAGATAACGTCAT
1 -CATATTT-TCAAGATAAAGTCAT
96702215 CATAT
1 CATAT
96702220 ACCCAAAACT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 5 0.21
23 18 0.75
24 1 0.04
ACGTcount: A:0.40, C:0.14, G:0.08, T:0.38
Consensus pattern (22 bp):
CATATTTTCAAGATAAAGTCAT
Found at i:96706559 original size:20 final size:21
Alignment explanation
Indices: 96706534--96706588 Score: 85
Period size: 20 Copynumber: 2.7 Consensus size: 21
96706524 TTGGTTGCTT
*
96706534 TGGCGGGGGTTGTGATT-GTC
1 TGGCGGGGGTTGTGATTACTC
96706554 TGGCGGGGGTTGTGATTACTC
1 TGGCGGGGGTTGTGATTACTC
*
96706575 TGGCGTGGGTTGTG
1 TGGCGGGGGTTGTG
96706589 GTTTCTTCGA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 17 0.53
21 15 0.47
ACGTcount: A:0.05, C:0.11, G:0.49, T:0.35
Consensus pattern (21 bp):
TGGCGGGGGTTGTGATTACTC
Found at i:96706980 original size:30 final size:30
Alignment explanation
Indices: 96706920--96706985 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
96706910 ATTGAGGCAT
* * *
96706920 TGGGCCTGGTGATTGTGTGAGCGCTATTGA
1 TGGGCCTGATGATTGCGTGAGCACTATTGA
*
96706950 TGGGCCTGATGATTGCGT-AGGCACTGTTGA
1 TGGGCCTGATGATTGCGTGA-GCACTATTGA
96706980 TGGGCC
1 TGGGCC
96706986 CGTGCTGTCA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 1 0.03
30 30 0.97
ACGTcount: A:0.14, C:0.17, G:0.39, T:0.30
Consensus pattern (30 bp):
TGGGCCTGATGATTGCGTGAGCACTATTGA
Found at i:96707490 original size:7 final size:7
Alignment explanation
Indices: 96707478--96707508 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
96707468 TATTAGTTAT
96707478 ATACTAA
1 ATACTAA
96707485 ATACTAA
1 ATACTAA
96707492 ATACTAA
1 ATACTAA
96707499 ATACTAA
1 ATACTAA
96707506 ATA
1 ATA
96707509 TGAAACGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.58, C:0.13, G:0.00, T:0.29
Consensus pattern (7 bp):
ATACTAA
Found at i:96715583 original size:22 final size:22
Alignment explanation
Indices: 96715558--96715600 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
96715548 TGTTGGGCTG
* *
96715558 TTTTTTCGATTTTGTTTTTGTA
1 TTTTTTCGATTTGGCTTTTGTA
*
96715580 TTTTTTGGATTTGGCTTTTGT
1 TTTTTTCGATTTGGCTTTTGT
96715601 GTGCTTAGAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.07, C:0.05, G:0.19, T:0.70
Consensus pattern (22 bp):
TTTTTTCGATTTGGCTTTTGTA
Found at i:96716056 original size:19 final size:18
Alignment explanation
Indices: 96716013--96716059 Score: 67
Period size: 19 Copynumber: 2.6 Consensus size: 18
96716003 AAAAAATTAG
96716013 AAAATTAAAATTATATAA
1 AAAATTAAAATTATATAA
**
96716031 ATTATTAAATATTATATAA
1 AAAATTAAA-ATTATATAA
96716050 AAAATTAAAA
1 AAAATTAAAA
96716060 GTACAACTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
18 8 0.33
19 16 0.67
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (18 bp):
AAAATTAAAATTATATAA
Found at i:96722192 original size:23 final size:23
Alignment explanation
Indices: 96722166--96722250 Score: 64
Period size: 23 Copynumber: 3.6 Consensus size: 23
96722156 ACAAAAAAAG
96722166 AAAATATAATAATAATAATAGTA
1 AAAATATAATAATAATAATAGTA
* * * *
96722189 AAAACACAATAGTAATAATAATGA
1 AAAATATAATAATAATAATAGT-A
* *
96722213 AAAGGTATTATAAT-ATAATAGTA
1 AAA-ATATAATAATAATAATAGTA
* *
96722236 ATAATGATGATAATA
1 AAAAT-ATAATAATA
96722251 GTGGTATTAG
Statistics
Matches: 45, Mismatches: 13, Indels: 7
0.69 0.20 0.11
Matches are distributed among these distances:
22 1 0.02
23 28 0.62
24 11 0.24
25 5 0.11
ACGTcount: A:0.59, C:0.02, G:0.09, T:0.29
Consensus pattern (23 bp):
AAAATATAATAATAATAATAGTA
Found at i:96722238 original size:33 final size:36
Alignment explanation
Indices: 96722196--96722288 Score: 102
Period size: 33 Copynumber: 2.6 Consensus size: 36
96722186 GTAAAAACAC
96722196 AATAGTAATAATAATGAAAA-GGTATTA-TAATA-T
1 AATAGTAATAATAATGAAAAGGGTATTAGTAATAGT
* *
96722229 AATAGTAATAATGATGATAATAGTGGTATTAGTAGTAGT
1 AATAGTAATAATAATGA-AA-AG-GGTATTAGTAATAGT
*
96722268 AATAATAATAATAATAGAAAA
1 AATAGTAATAATAAT-GAAAA
96722289 TAATAACAAT
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
33 16 0.33
34 2 0.04
35 1 0.02
37 7 0.14
38 5 0.10
39 16 0.33
40 2 0.04
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.32
Consensus pattern (36 bp):
AATAGTAATAATAATGAAAAGGGTATTAGTAATAGT
Found at i:96722292 original size:19 final size:18
Alignment explanation
Indices: 96722268--96722309 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
96722258 TAGTAGTAGT
*
96722268 AATAATAATAATAATAGAA
1 AATAATAACAATAATA-AA
*
96722287 AATAATAACAATATTAAA
1 AATAATAACAATAATAAA
96722305 AATAA
1 AATAA
96722310 CACTCTCTCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (18 bp):
AATAATAACAATAATAAA
Found at i:96722845 original size:15 final size:15
Alignment explanation
Indices: 96722810--96722866 Score: 60
Period size: 15 Copynumber: 3.6 Consensus size: 15
96722800 ATTTAGGTGA
*
96722810 TTGGGTTTTGGAGGTTG
1 TTGGGTTTT-G-GGATG
96722827 TTGGGTTTTGGGATG
1 TTGGGTTTTGGGATG
**
96722842 TTGGGTTTTTAGATG
1 TTGGGTTTTGGGATG
96722857 TTGGGCTTTT
1 TTGGG-TTTT
96722867 TAGCCCAGGC
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
15 22 0.61
16 5 0.14
17 9 0.25
ACGTcount: A:0.07, C:0.02, G:0.40, T:0.51
Consensus pattern (15 bp):
TTGGGTTTTGGGATG
Found at i:96722866 original size:16 final size:15
Alignment explanation
Indices: 96722825--96722869 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
96722815 TTTTGGAGGT
**
96722825 TGTTGGGTTTTGGGA
1 TGTTGGGTTTTTAGA
96722840 TGTTGGGTTTTTAGA
1 TGTTGGGTTTTTAGA
96722855 TGTTGGGCTTTTTAG
1 TGTTGGG-TTTTTAG
96722870 CCCAGGCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
15 20 0.74
16 7 0.26
ACGTcount: A:0.09, C:0.02, G:0.38, T:0.51
Consensus pattern (15 bp):
TGTTGGGTTTTTAGA
Found at i:96723491 original size:206 final size:206
Alignment explanation
Indices: 96723240--96724724 Score: 2720
Period size: 206 Copynumber: 7.2 Consensus size: 206
96723230 CAAATCTGCT
* * *
96723240 TCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTTGGATCTTGCTTCGGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
96723305 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
* * *
96723370 TTCTCTGATAATATAGAGATGCCAAATCATCTTAGACTTGCTTTAGTGTAAGCACGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
*
96723435 AATCAGCTATA
196 AATCAGCTATG
96723446 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
* * * *
96723511 ATCTGAAGGCCAGATCTGCTATGTATCTACTCTCCGTTGAAATGGAGATGCCAGATTTCAACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
96723576 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
96723641 AATCAGCTATG
196 AATCAGCTATG
96723652 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
*
96723717 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCAACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
96723782 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
96723847 AATCAGCTATG
196 AATCAGCTATG
96723858 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
96723923 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTC-ACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
96723987 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
96724052 AATCAGCTATG
196 AATCAGCTATG
96724063 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
* *
96724128 ATCTGAAGGCCAGATCTACTATATATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
* * *
96724193 TTCTTTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCATAAGCACGTGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
*
96724258 AATCAACTATG
196 AATCAGCTATG
*
96724269 TCTTCGATTTGCTCCTTGTAAGCACAATGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
* *
96724334 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCAAAATGGAGATGCCAGAATTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
96724399 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
96724464 AATCAGCTATG
196 AATCAGCTATG
96724475 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
*
96724540 ATCTGAAGGCCAGATCTGTTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
66 ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
* *
96724605 TTCTCTAACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCATAAGCACGCGAAAGCCA
131 TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
96724670 AATCAGCTATG
196 AATCAGCTATG
* * *
96724681 TCTTCGATTTGCTCATTGTAACCACAAGGATGCCAAACCATCTT
1 TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTT
96724725 ATATCTGCTT
Statistics
Matches: 1240, Mismatches: 38, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
205 203 0.16
206 1037 0.84
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.29
Consensus pattern (206 bp):
TCTTCGATTTGCTCCTTGTAAGCACAAGGATGCCAAATCATCTTGGATCTTGCTTCAGTATAAAC
ATCTGAAGGCCAGATCTGCTATGTATCTGCTCTCCGTCGAAATGGAGATGCCAGACTTCGACTTG
TTCTCTGACAATACAGAGATGCCAAATCATCTTAGACTTGCTTTAGCGTAAGCACGCGAAAGCCA
AATCAGCTATG
Found at i:96734914 original size:23 final size:23
Alignment explanation
Indices: 96734864--96734914 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
96734854 TACAAAAAAA
* *
96734864 GAAAATACAATAATAATAATAGT
1 GAAAACACAATAATAATAATAAT
* *
96734887 AAAAACACAATAGTAATAATAAT
1 GAAAACACAATAATAATAATAAT
96734910 GAAAA
1 GAAAA
96734915 GGTATTATAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.65, C:0.06, G:0.08, T:0.22
Consensus pattern (23 bp):
GAAAACACAATAATAATAATAAT
Found at i:96734936 original size:33 final size:38
Alignment explanation
Indices: 96734895--96734988 Score: 117
Period size: 39 Copynumber: 2.6 Consensus size: 38
96734885 GTAAAAACAC
96734895 AATAGTAATAATAATGA-AA-A-GGTATTA-TAAT-AT
1 AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
*
96734928 AATAGTAATAATGATGATAATAGTGGTATTAGTAATAAT
1 AATAGTAATAATAATGATAATAG-GGTATTAGTAATAAT
* *
96734967 AATAATAATAATAATAATAATA
1 AATAGTAATAATAATGATAATA
96734989 ATAGAAAATA
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
33 16 0.31
34 2 0.04
35 1 0.02
37 7 0.14
38 4 0.08
39 21 0.41
ACGTcount: A:0.54, C:0.00, G:0.12, T:0.34
Consensus pattern (38 bp):
AATAGTAATAATAATGATAATAGGGTATTAGTAATAAT
Found at i:96734968 original size:3 final size:3
Alignment explanation
Indices: 96734960--96734991 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
96734950 GTGGTATTAG
96734960 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
96734992 GAAAATAGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:96735412 original size:13 final size:13
Alignment explanation
Indices: 96735380--96735461 Score: 74
Period size: 13 Copynumber: 6.9 Consensus size: 13
96735370 TTTGTAGGCA
96735380 AGTGGAGTGG-TT
1 AGTGGAGTGGTTT
96735392 -G-GGA-TGGTTT
1 AGTGGAGTGGTTT
*
96735402 AGTGGGGTGGTTT
1 AGTGGAGTGGTTT
96735415 AGTAGG-GTGG--T
1 AGT-GGAGTGGTTT
96735426 --TGGAGTGGTTT
1 AGTGGAGTGGTTT
96735437 AGTGGAGTGGTTT
1 AGTGGAGTGGTTT
*
96735450 AATGGAGTGGTT
1 AGTGGAGTGGTT
96735462 GGAGTGAAGA
Statistics
Matches: 58, Mismatches: 2, Indels: 19
0.73 0.03 0.24
Matches are distributed among these distances:
8 2 0.03
9 8 0.14
10 5 0.09
11 4 0.07
12 2 0.03
13 35 0.60
14 2 0.03
ACGTcount: A:0.15, C:0.00, G:0.49, T:0.37
Consensus pattern (13 bp):
AGTGGAGTGGTTT
Found at i:96735435 original size:35 final size:35
Alignment explanation
Indices: 96735382--96735467 Score: 122
Period size: 35 Copynumber: 2.5 Consensus size: 35
96735372 TGTAGGCAAG
* *
96735382 TGGAGTGGTTGG-GATGGTTTAGTGGGGTGGTTTAG
1 TGGAGTGGTTGGAG-TGGTTTAGTGGAGTGGTTTAA
96735417 TAGG-GTGGTTGGAGTGGTTTAGTGGAGTGGTTTAA
1 T-GGAGTGGTTGGAGTGGTTTAGTGGAGTGGTTTAA
96735452 TGGAGTGGTTGGAGTG
1 TGGAGTGGTTGGAGTG
96735468 AAGATATTTG
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
34 2 0.04
35 41 0.89
36 3 0.07
ACGTcount: A:0.14, C:0.00, G:0.50, T:0.36
Consensus pattern (35 bp):
TGGAGTGGTTGGAGTGGTTTAGTGGAGTGGTTTAA
Found at i:96735541 original size:17 final size:17
Alignment explanation
Indices: 96735521--96735554 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
96735511 TGAGCCGTTT
96735521 AGGTGATTGAGCTTTGG
1 AGGTGATTGAGCTTTGG
* *
96735538 AGGTTATTGAGTTTTGG
1 AGGTGATTGAGCTTTGG
96735555 GCTATTGGGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.03, G:0.38, T:0.41
Consensus pattern (17 bp):
AGGTGATTGAGCTTTGG
Found at i:96736085 original size:11 final size:11
Alignment explanation
Indices: 96736071--96736118 Score: 51
Period size: 12 Copynumber: 4.2 Consensus size: 11
96736061 AAAATATATT
*
96736071 TATAATATAAA
1 TATAAAATAAA
*
96736082 TATAAAATATA
1 TATAAAATAAA
96736093 TATACAAATAAA
1 TATA-AAATAAA
*
96736105 TAAATAAATAAA
1 TATA-AAATAAA
96736117 TA
1 TA
96736119 ACCATAGTCA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
11 13 0.42
12 18 0.58
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (11 bp):
TATAAAATAAA
Found at i:96736113 original size:24 final size:24
Alignment explanation
Indices: 96736059--96736114 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
96736049 AGAAACCCAA
* *
96736059 AAAAAATATATTTATAATATAAAT
1 AAAAAATATATATACAATATAAAT
*
96736083 ATAAAATATATATACAA-ATAAAT
1 AAAAAATATATATACAATATAAAT
96736106 AAATAAATA
1 AAA-AAATA
96736115 AATAACCATA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 8 0.30
24 19 0.70
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (24 bp):
AAAAAATATATATACAATATAAAT
Found at i:96739072 original size:129 final size:128
Alignment explanation
Indices: 96738744--96739243 Score: 463
Period size: 129 Copynumber: 3.8 Consensus size: 128
96738734 CTCACAACAA
* * ** * *
96738744 TTAAAAATCCCTT-AAACGAAGGCGATATTCGGTACTTGGTAATTC-GTGGAATCGTGCCCTAAC
1 TTAAAAA-CCTTTAAAACGAAGGCGATCTTCGGTGTTTGGCAATTCTG-GGAATCGTGCCCTATC
* * * * * * *
96738807 GTGTTAGGTTGCAATTTCTCGTTTGCTCAAAATAATCGAATGTCCCTTTAGAATTTCATTCATGT
64 GTGCTGGGTTGCAATTTCTCGTTTGTTCAAAACAATCGAATATTCCTTTAG--GTTCATTCATGT
96738872 CTT
127 -TT
* * * *
96738875 CTAAAAATCCTTTAAAACGAAGGCAATAC-TCGGTGTTTGACAATTC-GGGAATCATGCCCTATC
1 TTAAAAA-CCTTTAAAACGAAGGCGAT-CTTCGGTGTTTGGCAATTCTGGGAATCGTGCCCTATC
* **
96738938 ATGCTGGGTTGTGATTTCTCGTTTGTTCAAAACAATCGAATATTCCTTTAGGTTCATTCATGTTT
64 GTGCTGGGTTGCAATTTCTCGTTTGTTCAAAACAATCGAATATTCCTTTAGGTTCATTCATGTTT
* ** * *
96739003 ATTAAAAACCTTTCAAAACGAAGGCGATCTTCGATGTTTGGTGATT-TGAGAATCGTGCCTTATC
1 -TTAAAAACCTTT-AAAACGAAGGCGATCTTCGGTGTTTGGCAATTCTGGGAATCGTGCCCTATC
* * * * * *
96739067 GTGCTGGGTTGCGCATTT-TCATTTGTTCCAAAACGATCGAAGATTCCTTTCGGAATTTCACTCA
64 GTGCTGGGTTGC-AATTTCTCGTTTGTT-CAAAACAATCGAATATTCCTTTAGG---TTCATTCA
96739131 TGTTT
124 TGTTT
* * * * * *
96739136 TCTAAAAACTCTTTAAAACAAAAGAGATGTTCGGTGTTTGGCAATTCGGGGAATAGTGCCCTATC
1 T-TAAAAAC-CTTTAAAACGAAGGCGATCTTCGGTGTTTGGCAATTCTGGGAATCGTGCCCTATC
* *
96739201 GTGCTGGGTTGCAATCTCTCGTTTGTTCAAAATAATCGAATAT
64 GTGCTGGGTTGCAATTTCTCGTTTGTTCAAAACAATCGAATAT
96739244 CTCTTCGGAA
Statistics
Matches: 300, Mismatches: 54, Indels: 28
0.79 0.14 0.07
Matches are distributed among these distances:
128 8 0.03
129 74 0.25
130 26 0.09
131 67 0.22
132 27 0.09
133 60 0.20
134 38 0.13
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.35
Consensus pattern (128 bp):
TTAAAAACCTTTAAAACGAAGGCGATCTTCGGTGTTTGGCAATTCTGGGAATCGTGCCCTATCGT
GCTGGGTTGCAATTTCTCGTTTGTTCAAAACAATCGAATATTCCTTTAGGTTCATTCATGTTT
Found at i:96745846 original size:22 final size:22
Alignment explanation
Indices: 96745816--96745868 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
96745806 GTTTTGGAGG
96745816 AATAAGATTAATCAAAAAGGTT
1 AATAAGATTAATCAAAAAGGTT
*
96745838 AATATGATTAATCAAAAAGGTT
1 AATAAGATTAATCAAAAAGGTT
**
96745860 TCTAAGATT
1 AATAAGATT
96745869 TGACGCCCAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.49, C:0.06, G:0.13, T:0.32
Consensus pattern (22 bp):
AATAAGATTAATCAAAAAGGTT
Found at i:96746294 original size:9 final size:9
Alignment explanation
Indices: 96746280--96746387 Score: 51
Period size: 9 Copynumber: 11.6 Consensus size: 9
96746270 CTTTATATAT
96746280 TTTTTAAAA
1 TTTTTAAAA
*
96746289 TTTTTAGAA
1 TTTTTAAAA
*
96746298 TTTTTATAA
1 TTTTTAAAA
*
96746307 TTTTAAAAA
1 TTTTTAAAA
** *
96746316 AGTATATAAA
1 TTTTTA-AAA
96746326 -TTTTAAAA
1 TTTTTAAAA
96746334 -TTTTATAAA
1 TTTTTA-AAA
*
96746343 TATTTT-GAA
1 T-TTTTAAAA
96746352 TTTTTGAAAA
1 TTTTT-AAAA
*
96746362 TTATTTTGAAA
1 -T-TTTTAAAA
*
96746373 TATTTTATAA
1 T-TTTTAAAA
96746383 TTTTT
1 TTTTT
96746388 GTTGAGAGAG
Statistics
Matches: 76, Mismatches: 15, Indels: 16
0.71 0.14 0.15
Matches are distributed among these distances:
8 12 0.16
9 38 0.50
10 14 0.18
11 8 0.11
12 4 0.05
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:96746340 original size:19 final size:18
Alignment explanation
Indices: 96746290--96746340 Score: 50
Period size: 19 Copynumber: 2.8 Consensus size: 18
96746280 TTTTTAAAAT
*
96746290 TTTTAGAATTTT-TATAA
1 TTTTAAAATTTTATATAA
***
96746307 TTTTAAAAAAGTATATAAA
1 TTTTAAAATTTTATAT-AA
96746326 TTTTAAAATTTTATA
1 TTTTAAAATTTTATA
96746341 AATATTTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
17 8 0.32
18 3 0.12
19 14 0.56
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (18 bp):
TTTTAAAATTTTATATAA
Found at i:96749466 original size:19 final size:18
Alignment explanation
Indices: 96749442--96749483 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
96749432 ATTAAATTAT
96749442 TTAAAAAT-TATAAAAGTA
1 TTAAAAATATATAAAA-TA
96749460 TTAAAAATATATAAAA-A
1 TTAAAAATATATAAAATA
96749477 TTAAAAA
1 TTAAAAA
96749484 ACACTAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 8 0.35
18 8 0.35
19 7 0.30
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (18 bp):
TTAAAAATATATAAAATA
Found at i:96749501 original size:28 final size:28
Alignment explanation
Indices: 96749443--96749503 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
96749433 TTAAATTATT
** * *
96749443 TAAAAATTATAAAAGTATTAAAAATATA
1 TAAAAATTATAAAAACACTAAAAAGATA
96749471 TAAAAATTA-AAAAACACTAAAAAGATCA
1 TAAAAATTATAAAAACACTAAAAAGAT-A
96749499 TAAAA
1 TAAAA
96749504 TTAGTATGGA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 13 0.46
28 15 0.54
ACGTcount: A:0.67, C:0.05, G:0.03, T:0.25
Consensus pattern (28 bp):
TAAAAATTATAAAAACACTAAAAAGATA
Found at i:96750195 original size:30 final size:30
Alignment explanation
Indices: 96750159--96750221 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
96750149 ACTTAACAAG
* *
96750159 CAAATGTCTCTAAAATAATAACAGAATTAA
1 CAAATGTCTCTAAAATAATAACAAAACTAA
*
96750189 CAAATGTCTTTAAAATAATAACAAAACTAA
1 CAAATGTCTCTAAAATAATAACAAAACTAA
96750219 CAA
1 CAA
96750222 TAAAATAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.56, C:0.14, G:0.05, T:0.25
Consensus pattern (30 bp):
CAAATGTCTCTAAAATAATAACAAAACTAA
Found at i:96758004 original size:126 final size:125
Alignment explanation
Indices: 96757761--96758134 Score: 470
Period size: 122 Copynumber: 3.0 Consensus size: 125
96757751 TTGAATATAC
* * * * *
96757761 ATACACATGTCAGGTTACTCGTCCT-GGCTAAACCTTTAAGTTGACATTAGGTTACCAGTCTCGG
1 ATACA-ATGTCAAGTTACTCG-CCTAGGCTAAACCTTTAAATTGACATCAAGTTACCAGTCTAGG
* * * * *
96757825 CTAAACCTGTGTCAGAAGTATCTTCGATACATTAATTAG-TTGTCCGAGCTGAAAATATGTAT
64 CTAAACCTGTGTCACAAGTATCTTCGATATATCAATT-GCTCGTCCAAGCTGAAAATATGTAT
*
96757887 ATACAAATGTCAAGTTACTAGCCTAGGCTAAACCTTTAAATTGACATCAAGTTACCAGTCTAGGC
1 ATAC-AATGTCAAGTTACTCGCCTAGGCTAAACCTTTAAATTGACATCAAGTTACCAGTCTAGGC
* * * *
96757952 TAAACTTGTGTCATAAGTATCTTCGATATATCAATTGCTCATCCAAGATGAAAATA--TAT
65 TAAACCTGTGTCACAAGTATCTTCGATATATCAATTGCTCGTCCAAGCTGAAAATATGTAT
* * * * *
96758011 ATAC-ATTTCAAGTTACTCGTCTAGGCTAAACCTTTAAATTGACATCATGTTACCAATCAAGGCT
1 ATACAATGTCAAGTTACTCGCCTAGGCTAAACCTTTAAATTGACATCAAGTTACCAGTCTAGGCT
* * *
96758075 AAACCTGTGTCACAAGTATCTCCGGTATATCAATTGCTCGTCTAAGCTGAAAATATGTAT
66 AAACCTGTGTCACAAGTATCTTCGATATATCAATTGCTCGTCCAAGCTGAAAATATGTAT
96758135 TTGTGTCAAT
Statistics
Matches: 216, Mismatches: 27, Indels: 12
0.85 0.11 0.05
Matches are distributed among these distances:
122 102 0.47
124 10 0.05
125 4 0.02
126 99 0.46
127 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (125 bp):
ATACAATGTCAAGTTACTCGCCTAGGCTAAACCTTTAAATTGACATCAAGTTACCAGTCTAGGCT
AAACCTGTGTCACAAGTATCTTCGATATATCAATTGCTCGTCCAAGCTGAAAATATGTAT
Found at i:96761484 original size:31 final size:31
Alignment explanation
Indices: 96761447--96761508 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
96761437 CAAATAGATC
* *
96761447 ATTTGTCTTTAAATTTGAAAGTTATAAAAGT
1 ATTTGTCTCTAAATTTGAAAATTATAAAAGT
*
96761478 ATTTGTCTCTGAATTTGAAAATTATAAAAGT
1 ATTTGTCTCTAAATTTGAAAATTATAAAAGT
96761509 TTGATGATGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.39, C:0.05, G:0.13, T:0.44
Consensus pattern (31 bp):
ATTTGTCTCTAAATTTGAAAATTATAAAAGT
Found at i:96774613 original size:18 final size:17
Alignment explanation
Indices: 96774592--96774648 Score: 64
Period size: 18 Copynumber: 3.3 Consensus size: 17
96774582 TTATGTTTTC
96774592 TTTTTACTTTTTATATAT
1 TTTTTA-TTTTTATATAT
*
96774610 TTTTTGATTTTTGATTTA-
1 TTTTT-ATTTTT-ATATAT
96774628 TTTTTATTTTTATAT-T
1 TTTTTATTTTTATATAT
96774644 TTTTT
1 TTTTT
96774649 GAATTATTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
16 8 0.24
17 6 0.18
18 15 0.44
19 5 0.15
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.77
Consensus pattern (17 bp):
TTTTTATTTTTATATAT
Found at i:96774621 original size:19 final size:19
Alignment explanation
Indices: 96774599--96774660 Score: 60
Period size: 19 Copynumber: 3.4 Consensus size: 19
96774589 TTCTTTTTAC
96774599 TTTTTATATATTTTTTGAT
1 TTTTTATATATTTTTTGAT
* *
96774618 TTTTGATTTA-TTTTT-A-
1 TTTTTATATATTTTTTGAT
96774634 TTTTTATAT-TTTTTTGAAT
1 TTTTTATATATTTTTTG-AT
*
96774653 TATTTATA
1 TTTTTATA
96774661 AACATGATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
16 12 0.35
17 1 0.03
18 6 0.18
19 15 0.44
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.73
Consensus pattern (19 bp):
TTTTTATATATTTTTTGAT
Found at i:96774648 original size:17 final size:17
Alignment explanation
Indices: 96774592--96774648 Score: 62
Period size: 17 Copynumber: 3.2 Consensus size: 17
96774582 TTATGTTTTC
96774592 TTTTTACTTTTTATATATT
1 TTTTTA-TTTTTATAT-TT
* *
96774611 TTTTGATTTTTGAT-TTA
1 TTTTTATTTTT-ATATTT
96774628 TTTTTATTTTTATATTT
1 TTTTTATTTTTATATTT
96774645 TTTT
1 TTTT
96774649 GAATTATTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
16 2 0.06
17 17 0.53
18 6 0.19
19 7 0.22
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.77
Consensus pattern (17 bp):
TTTTTATTTTTATATTT
Found at i:96780011 original size:15 final size:16
Alignment explanation
Indices: 96779991--96780023 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
96779981 CACGACATTC
96779991 TTTTTCC-CTTTCTTT
1 TTTTTCCTCTTTCTTT
*
96780006 TTTTTCCTTTTTCTTT
1 TTTTTCCTCTTTCTTT
96780022 TT
1 TT
96780024 CCTGTTCTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (16 bp):
TTTTTCCTCTTTCTTT
Found at i:96781366 original size:22 final size:21
Alignment explanation
Indices: 96781317--96781355 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
96781307 GTCGAAATAG
96781317 AATG-TAA-AAATAATTTAAA
1 AATGATAATAAATAATTTAAA
96781336 AATGATAATAAATGAATTTA
1 AATGATAATAAAT-AATTTA
96781356 TAACATATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 3 0.18
21 4 0.24
22 6 0.35
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33
Consensus pattern (21 bp):
AATGATAATAAATAATTTAAA
Found at i:96781812 original size:3 final size:3
Alignment explanation
Indices: 96781798--96781851 Score: 65
Period size: 3 Copynumber: 18.0 Consensus size: 3
96781788 ATTTAATAGT
* * *
96781798 ATA ATG ATA ATA ATA ATA GA-A GTA ATA ATA ATA ATA ATA ACA ATA
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
96781843 ATA ATA ATA
1 ATA ATA ATA
96781852 TAAAAAATGT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
3 42 0.98
4 1 0.02
ACGTcount: A:0.63, C:0.02, G:0.06, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:96782512 original size:4 final size:4
Alignment explanation
Indices: 96782495--96782525 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
96782485 TTTTAAGGAA
*
96782495 AAAT AAAG AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
96782526 AAGAAAAACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.19
Consensus pattern (4 bp):
AAAT
Found at i:96782555 original size:23 final size:23
Alignment explanation
Indices: 96782529--96782574 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
96782519 AAATAAAAAG
96782529 AAAAACTAAAAAAACATAACTTA
1 AAAAACTAAAAAAACATAACTTA
96782552 AAAAACTAAAAAAACATAACTTA
1 AAAAACTAAAAAAACATAACTTA
96782575 CGTTTTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.70, C:0.13, G:0.00, T:0.17
Consensus pattern (23 bp):
AAAAACTAAAAAAACATAACTTA
Found at i:96785111 original size:25 final size:25
Alignment explanation
Indices: 96785083--96785131 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
96785073 TCGCTTACCC
96785083 TTTCATGTTA-TTTATTTAGTTATTG
1 TTTC-TGTTATTTTATTTAGTTATTG
*
96785108 TTTCTGTTATTTTATTTATTTATT
1 TTTCTGTTATTTTATTTAGTTATT
96785132 AATTCTATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.18, C:0.04, G:0.08, T:0.69
Consensus pattern (25 bp):
TTTCTGTTATTTTATTTAGTTATTG
Found at i:96785137 original size:25 final size:24
Alignment explanation
Indices: 96785088--96785137 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
96785078 TACCCTTTCA
**
96785088 TGTTATTTATTTAGTTATTGTTTC
1 TGTTATTTATTTAGTTATTAATTC
*
96785112 TGTTATTTTATTTATTTATTAATTC
1 TGTTA-TTTATTTAGTTATTAATTC
96785137 T
1 T
96785138 ATTCTTAGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 5 0.23
25 17 0.77
ACGTcount: A:0.20, C:0.04, G:0.08, T:0.68
Consensus pattern (24 bp):
TGTTATTTATTTAGTTATTAATTC
Found at i:96787123 original size:31 final size:30
Alignment explanation
Indices: 96787057--96787130 Score: 78
Period size: 31 Copynumber: 2.4 Consensus size: 30
96787047 TTTCCTGATA
* * *
96787057 AATTTTAGTATATGTATTTTTTGAATTGGTT
1 AATTTTAGTTTTTATATTTTTTGAATT-GTT
*
96787088 AATTTTATTTTTTATATTTTTTGAATT-TT
1 AATTTTAGTTTTTATATTTTTTGAATTGTT
96787117 GAAATTTTAGTTTT
1 --AATTTTAGTTTT
96787131 AACCCAAATG
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
29 2 0.06
31 34 0.94
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.64
Consensus pattern (30 bp):
AATTTTAGTTTTTATATTTTTTGAATTGTT
Found at i:96791338 original size:34 final size:35
Alignment explanation
Indices: 96791266--96791338 Score: 87
Period size: 34 Copynumber: 2.1 Consensus size: 35
96791256 TCATATCCTA
*
96791266 CCTACAGTCTCAGTCTTCTAAAGTTTTCAATTTTC
1 CCTACAGTCTCAGTCTTCTAAAGTTTTCAATTTAC
* * *
96791301 CCTACTGTCTCAGT-TTCTACAG-TTTCAGTATTAC
1 CCTACAGTCTCAGTCTTCTAAAGTTTTCAAT-TTAC
96791335 CCTA
1 CCTA
96791339 ACTACAGAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
33 6 0.18
34 14 0.42
35 13 0.39
ACGTcount: A:0.22, C:0.27, G:0.10, T:0.41
Consensus pattern (35 bp):
CCTACAGTCTCAGTCTTCTAAAGTTTTCAATTTAC
Found at i:96792542 original size:60 final size:60
Alignment explanation
Indices: 96792395--96792543 Score: 142
Period size: 60 Copynumber: 2.5 Consensus size: 60
96792385 CTATTCAGAA
* *
96792395 ATCAGAGT-TAACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAAT
1 ATCAGAGTAT-ACTGGGCCTT-GCCCATATCAATATCAATCTGGGCCATAGCCCATTACAAT
* * * * * *
96792456 ATCAGAGTATACTGAGCCTAGACCATATCAGTGTCAATCTGGGCCGTAGCCCTATTACAA-
1 ATCAGAGTATACTGGGCCTTGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTACAAT
* **
96792516 GTC-GAGATATGTTGGGCCTTGCCCATAT
1 ATCAGAG-TATACTGGGCCTTGCCCATAT
96792544 TAACACAGCT
Statistics
Matches: 71, Mismatches: 14, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
59 3 0.04
60 45 0.63
61 22 0.31
62 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.28
Consensus pattern (60 bp):
ATCAGAGTATACTGGGCCTTGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAAT
Found at i:96798730 original size:10 final size:11
Alignment explanation
Indices: 96798708--96798735 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
96798698 ATTAACAAGA
96798708 TTTTATAATTT
1 TTTTATAATTT
96798719 TTTTATAATTT
1 TTTTATAATTT
96798730 TTTTAT
1 TTTTAT
96798736 GATTGATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (11 bp):
TTTTATAATTT
Found at i:96801788 original size:7 final size:8
Alignment explanation
Indices: 96801776--96801809 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
96801766 ATAATAAAAT
96801776 ATAT-AAA
1 ATATCAAA
96801783 ATAT-AAA
1 ATATCAAA
96801790 ATATCAAA
1 ATATCAAA
96801798 ATATCAAA
1 ATATCAAA
96801806 ATAT
1 ATAT
96801810 TAGAATAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 11 0.42
8 15 0.58
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (8 bp):
ATATCAAA
Found at i:96801792 original size:24 final size:24
Alignment explanation
Indices: 96801765--96801820 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 24
96801755 TAATGATGTG
*
96801765 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
*
96801789 AAT-ATCAAAATATCAAAATATTAG
1 AATAAT-AAAATATCAAAATATTAA
96801813 AATAATAA
1 AATAATAA
96801821 TAATTAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
23 8 0.30
24 17 0.63
25 2 0.07
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.29
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:96801816 original size:16 final size:15
Alignment explanation
Indices: 96801769--96801816 Score: 60
Period size: 16 Copynumber: 3.1 Consensus size: 15
96801759 GATGTGAATA
96801769 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
*
96801785 ATAAAATATCAAAAT
1 ATAAAATATTAAAAT
*
96801800 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
96801816 A
1 A
96801817 ATAATAATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
15 7 0.25
16 21 0.75
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:96801980 original size:20 final size:21
Alignment explanation
Indices: 96801929--96801984 Score: 64
Period size: 20 Copynumber: 2.8 Consensus size: 21
96801919 ATACTACATC
96801929 AATATGTACAT-ATATAAAAA
1 AATATGTACATAATATAAAAA
* * *
96801949 AATACGT-GATAATAT-TAAA
1 AATATGTACATAATATAAAAA
96801968 AATATGTACATAATATA
1 AATATGTACATAATATA
96801985 GTGTTAAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
19 11 0.39
20 17 0.61
ACGTcount: A:0.55, C:0.05, G:0.07, T:0.32
Consensus pattern (21 bp):
AATATGTACATAATATAAAAA
Found at i:96802026 original size:22 final size:24
Alignment explanation
Indices: 96801963--96802098 Score: 91
Period size: 25 Copynumber: 5.5 Consensus size: 24
96801953 CGTGATAATA
*
96801963 TTAAAAATATGTACATAATATAGTG
1 TTAAAAATATATACATAATATAG-G
*
96801988 TTAAAAATACATACATAATATA-G
1 TTAAAAATATATACATAATATAGG
* * **
96802011 TT-AAGATATATACATAAGATAACA
1 TTAAAAATATATACATAATAT-AGG
* **
96802035 TGTAAATATATATATAAATAATATATA
1 T-TAAA-A-ATATATACATAATATAGG
*
96802062 TTAAAGATATATACATAA-ATA-G
1 TTAAAAATATATACATAATATAGG
96802084 TATAAAATATATATA
1 T-TAAAA-ATATATA
96802099 TACGTAATAT
Statistics
Matches: 89, Mismatches: 14, Indels: 17
0.74 0.12 0.14
Matches are distributed among these distances:
22 16 0.18
23 11 0.12
24 19 0.21
25 21 0.24
26 6 0.07
27 3 0.03
28 13 0.15
ACGTcount: A:0.54, C:0.04, G:0.07, T:0.35
Consensus pattern (24 bp):
TTAAAAATATATACATAATATAGG
Found at i:96802028 original size:13 final size:13
Alignment explanation
Indices: 96802012--96802100 Score: 57
Period size: 12 Copynumber: 7.2 Consensus size: 13
96802002 ATAATATAGT
*
96802012 TAAGATATATACA
1 TAAGATATATATA
* *
96802025 TAAGATA-ACATG
1 TAAGATATATATA
96802037 TAA-ATATATATA
1 TAAGATATATATA
96802049 TAA-ATAATATATA
1 TAAGAT-ATATATA
*
96802062 TTAAAGATATATACA
1 -T-AAGATATATATA
*
96802077 TAA-ATA-GTATA
1 TAAGATATATATA
96802088 -AA-ATATATATA
1 TAAGATATATATA
96802099 TA
1 TA
96802101 CGTAATATAG
Statistics
Matches: 60, Mismatches: 9, Indels: 15
0.71 0.11 0.18
Matches are distributed among these distances:
10 5 0.08
11 10 0.17
12 17 0.28
13 16 0.27
14 2 0.03
15 8 0.13
16 2 0.03
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.35
Consensus pattern (13 bp):
TAAGATATATATA
Found at i:96802059 original size:15 final size:15
Alignment explanation
Indices: 96802039--96802087 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
96802029 ATAACATGTA
96802039 AATATATATATAAAT
1 AATATATATATAAAT
96802054 AATATATAT-TAAA-
1 AATATATATATAAAT
* *
96802067 GATATATACATAAAT
1 AATATATATATAAAT
*
96802082 AGTATA
1 AATATA
96802088 AAATATATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
13 7 0.25
14 8 0.29
15 13 0.46
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (15 bp):
AATATATATATAAAT
Found at i:96802069 original size:52 final size:50
Alignment explanation
Indices: 96802005--96802109 Score: 131
Period size: 50 Copynumber: 2.1 Consensus size: 50
96801995 TACATACATA
*
96802005 ATATAGTTAAGATATATACATAAGATAACATGTAAATATATATATAAATAAT
1 ATATAGTTAAGATATATACATAA-ATAACAT-AAAATATATATATAAATAAT
** **
96802057 ATATA-TTAAAGATATATACATAAATAGTATAAAATATATATATACGTAAT
1 ATATAGTT-AAGATATATACATAAATAACATAAAATATATATATAAATAAT
96802107 ATA
1 ATA
96802110 GAATTTAAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
50 20 0.43
51 7 0.15
52 20 0.43
ACGTcount: A:0.54, C:0.04, G:0.07, T:0.35
Consensus pattern (50 bp):
ATATAGTTAAGATATATACATAAATAACATAAAATATATATATAAATAAT
Found at i:96802118 original size:52 final size:52
Alignment explanation
Indices: 96802013--96802123 Score: 129
Period size: 50 Copynumber: 2.2 Consensus size: 52
96802003 TAATATAGTT
* *
96802013 AAGATATATACATAAGATAACATGTAAATATATATATAAATAATATATATTA
1 AAGATATATACATAAGATAACATGAAAATATATATATAAATAATATAAATTA
** **
96802065 AAGATATATACATAA-ATAGTAT-AAAATATATATATACGTAATATAGAATTTA
1 AAGATATATACATAAGATAACATGAAAATATATATATAAATAATATA-AA-TTA
96802117 AA-ATATA
1 AAGATATA
96802124 CCTAATATAT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
50 20 0.39
51 11 0.22
52 20 0.39
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (52 bp):
AAGATATATACATAAGATAACATGAAAATATATATATAAATAATATAAATTA
Found at i:96802173 original size:23 final size:25
Alignment explanation
Indices: 96802130--96802175 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
96802120 TATACCTAAT
96802130 ATATTAAAAGAATATATATAATATA
1 ATATTAAAAGAATATATATAATATA
*
96802155 ATATTAAGA-AATATA-ATAATA
1 ATATTAAAAGAATATATATAATA
96802176 ACAAAAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 6 0.30
25 8 0.40
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (25 bp):
ATATTAAAAGAATATATATAATATA
Found at i:96802815 original size:30 final size:30
Alignment explanation
Indices: 96802665--96802839 Score: 228
Period size: 30 Copynumber: 5.8 Consensus size: 30
96802655 TAGGTACAAG
* *
96802665 TGGTGGTGGAGCAA-GTGTGGTTAGTGGAGT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
* ** * *
96802695 AGGTAATGGAGCAA-GTGTGGCTAGTGGATT
1 TGGTGGTGGA-AAAGGTGTGGCTAGTGGAGT
*
96802725 TGGTGGTGGAGAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
*
96802755 TGGTGGTGGAAAAGGAGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
96802785 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
*
96802815 TTGTGGTGGAAAAGGTGTGGCTAGT
1 TGGTGGTGGAAAAGGTGTGGCTAGT
96802840 TGAGAAAAGA
Statistics
Matches: 130, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
29 2 0.02
30 128 0.98
ACGTcount: A:0.21, C:0.04, G:0.48, T:0.27
Consensus pattern (30 bp):
TGGTGGTGGAAAAGGTGTGGCTAGTGGAGT
Found at i:96802967 original size:14 final size:14
Alignment explanation
Indices: 96802948--96802978 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
96802938 TTTTGGGTTT
96802948 TGGTTTAATTTTGG
1 TGGTTTAATTTTGG
96802962 TGGTTTAATTTTGG
1 TGGTTTAATTTTGG
96802976 TGG
1 TGG
96802979 GTTAGGTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.13, C:0.00, G:0.32, T:0.55
Consensus pattern (14 bp):
TGGTTTAATTTTGG
Found at i:96803377 original size:37 final size:37
Alignment explanation
Indices: 96803331--96803401 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
96803321 TCTTCTATCA
96803331 CTTCAGTGAGATAAGGTTTTGGTCTTCTCTTCTGTTG
1 CTTCAGTGAGATAAGGTTTTGGTCTTCTCTTCTGTTG
*
96803368 CTTCCGTGAGATAAGGTTTTGGTCTTCTCTTCTG
1 CTTCAGTGAGATAAGGTTTTGGTCTTCTCTTCTG
96803402 CCACTTCAGA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.13, C:0.18, G:0.24, T:0.45
Consensus pattern (37 bp):
CTTCAGTGAGATAAGGTTTTGGTCTTCTCTTCTGTTG
Found at i:96803662 original size:14 final size:14
Alignment explanation
Indices: 96803643--96803692 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
96803633 GAGTTGATTT
* *
96803643 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
96803657 TTGAAAAAACAGAAA
1 TTG-AAAAACAGAAA
*
96803672 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
96803686 TT-AAAAA
1 TTGAAAAA
96803693 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
15 12 0.39
ACGTcount: A:0.64, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:96803736 original size:104 final size:105
Alignment explanation
Indices: 96803570--96803766 Score: 290
Period size: 104 Copynumber: 1.9 Consensus size: 105
96803560 ACTAAACATT
* * *
96803570 AAAAACAGAAATTGAAAAATAGCTCAGCATGTGAGCAAAGGCTCAACTCACATCTCGCAATATGA
1 AAAAACAGAAATTGAAAAAGACCTCAGCATGTGAGCAAAGACTCAACTCACATCTCGCAATATGA
* *
96803635 GTTGATTTTTGA-AAAATATAAATTGAAAAAACAGAAATTG
66 GTTAATTTTTGACAAAA-AGAAATTGAAAAAACAGAAATTG
* ** *
96803675 AAAAGCAGAAATT-AAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATATGA
1 AAAAACAGAAATTGAAAAAGACCTCAGCATGTGAGCAAAGACTCAACTCACATCTCGCAATATGA
96803739 GTTAATTTTTGACAAAAAGAAATTGAAA
66 GTTAATTTTTGACAAAAAGAAATTGAAA
96803767 TTACCTCAGC
Statistics
Matches: 82, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
104 66 0.80
105 16 0.20
ACGTcount: A:0.45, C:0.16, G:0.16, T:0.23
Consensus pattern (105 bp):
AAAAACAGAAATTGAAAAAGACCTCAGCATGTGAGCAAAGACTCAACTCACATCTCGCAATATGA
GTTAATTTTTGACAAAAAGAAATTGAAAAAACAGAAATTG
Found at i:96803799 original size:73 final size:74
Alignment explanation
Indices: 96803672--96803897 Score: 287
Period size: 76 Copynumber: 3.0 Consensus size: 74
96803662 AAAACAGAAA
* * ** *
96803672 TTGAAAAGCAGAAA-TTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTTAAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATA
96803736 TGAGTTAATTT
64 TGAGTTAATTT
* * *
96803747 TTGACAAAA-AGAAA-TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATAT
1 TTGA-AAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
*
96803810 GAGTTGATTTTT
65 GAGTT-A-ATTT
*
96803822 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
*
96803887 AGTTGATTT
66 AGTTAATTT
96803896 TT
1 TT
96803898 TTTACGAACA
Statistics
Matches: 131, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
73 34 0.26
74 10 0.08
75 34 0.26
76 53 0.40
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (74 bp):
TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
AGTTAATTT
Found at i:96804048 original size:73 final size:73
Alignment explanation
Indices: 96803922--96804506 Score: 810
Period size: 73 Copynumber: 7.9 Consensus size: 73
96803912 TTGAAGAACT
** **
96803922 GAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTT
1 GAAATTGAAATTACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTT
96803987 TTGACAAACA
64 TTGACAAACA
* * *
96803997 GAAATTGAAATTACTTCAGCGTGTCCCGAGGCTCAACTCAACTCTCACAATATGAGTTAATTTTT
1 GAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
96804062 GACAAACA
66 GACAAACA
** *
96804070 GAAATTGAAATTACCTCAATGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGAGTTAATTTTT
1 GAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
*
96804135 GAAAAACA
66 GACAAACA
* * * *
96804143 GAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTTATTTT
1 GAAA-TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAG-TTA--AT
* *
96804208 TTTTTACGAACA
62 TTTTGACAAACA
** **
96804220 GAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTT
1 GAAATTGAAATTACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTT
96804285 TTGACAAACA
64 TTGACAAACA
96804295 GAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
1 GAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
96804360 GACAAACA
66 GACAAACA
* * *
96804368 GAAATTGAAATTACCTCAGTGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTT
1 GAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
*
96804433 GAAAAACA
66 GACAAACA
* * * * * *
96804441 GAAATTTAAAAATACATCGGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 GAAA-TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTT
96804506 T
65 T
96804507 TTTTTACGAA
Statistics
Matches: 456, Mismatches: 47, Indels: 15
0.88 0.09 0.03
Matches are distributed among these distances:
73 243 0.53
74 100 0.22
75 49 0.11
76 14 0.03
77 17 0.04
78 33 0.07
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (73 bp):
GAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
GACAAACA
Found at i:96804533 original size:14 final size:14
Alignment explanation
Indices: 96804514--96804541 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
96804504 TTTTTTTTAC
96804514 GAACAGAAATTGAA
1 GAACAGAAATTGAA
96804528 GAACAGAAATTGAA
1 GAACAGAAATTGAA
96804542 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:96804655 original size:73 final size:72
Alignment explanation
Indices: 96804523--96804746 Score: 331
Period size: 74 Copynumber: 3.0 Consensus size: 72
96804513 CGAACAGAAA
* * *
96804523 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGC--GTG-TCCGAGGCTCAACTCACCTCTCGCAATAT
*
96804588 GAGTTAATTT
63 GAGTTGATTT
* *
96804598 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTCGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTC-CGAGGCTCAACTCACCTCTCGCAATATGA
96804663 GTTGATTT
65 GTTGATTT
*
96804671 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAA-TTGAAAATACCTCAGCGTGTCC-GAGGCTCAACTCACCTCTCGCAATATG
96804736 AGTTGATTT
64 AGTTGATTT
96804745 TT
1 TT
96804747 TTTTACGAAC
Statistics
Matches: 137, Mismatches: 9, Indels: 7
0.90 0.06 0.05
Matches are distributed among these distances:
72 1 0.01
73 53 0.39
74 57 0.42
75 26 0.19
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.28
Consensus pattern (72 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCCGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTT
Found at i:96804814 original size:91 final size:90
Alignment explanation
Indices: 96804671--96804837 Score: 239
Period size: 91 Copynumber: 1.8 Consensus size: 90
96804661 GAGTTGATTT
* *
96804671 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
*
96804736 AGTTGATTTTTTTTTACGAACAGAA
66 AGTTAATTTTTTTTTACGAACAGAA
* * *
96804761 TTGAAGAACAGAAA-TTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGTAAT
1 TTGAAAAACAGAAATTTAAAAAGACCTCAGC--GTG-GCCTGAGGCTCAACTCACCTCTCGCAAT
96804824 ATGAGTTAATTTTT
63 ATGAGTTAATTTTT
96804838 GACAAACAGA
Statistics
Matches: 68, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
89 14 0.21
90 13 0.19
91 39 0.57
92 2 0.03
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (90 bp):
TTGAAAAACAGAAATTTAAAAAGACCTCAGCGTGGCCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTAATTTTTTTTTACGAACAGAA
Found at i:96804848 original size:313 final size:299
Alignment explanation
Indices: 96803922--96804903 Score: 1284
Period size: 298 Copynumber: 3.2 Consensus size: 299
96803912 TTGAAGAACT
96803922 GAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTT
1 GAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTT
* * *
96803987 TTGACAAACAGAAATTGAAATTACTTCAGCGTGTCCCGAGGCTCAACTCAACTCTCACAATATGA
66 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
* * * ** *
96804052 GTTAATTTTTGACAAACAGAAATTGAAATTACCTCAATGTGTCCCGAGGCTCAACTCACCTTTCG
131 GTTAATTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCG
*
96804117 CAATATGAGTTAATTTTTGA---AAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCA
196 CAATATGAGTTGATTTTTGATTGAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCA
* *
96804179 ACTCACCTCTCGCAATATGAGTTTATTTTTTTTTACGAACA
261 ACTCACCTCTCGCAATATGAG-TTA-TTTTTTTGACAAACA
96804220 GAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTT
1 GAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTT
96804285 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
66 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
* * * * *
96804350 GTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGTGTGTCCCGAGGCTCAACTCACCTTTCG
131 GTTAATTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCG
* *
96804415 CAATATGAGTTGATTTTTGA---AAAACAGAAATTTAAAAATACATCGGCGTGTCCTGAGGCTCA
196 CAATATGAGTTGATTTTTGATTGAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCA
96804477 ACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTACGAACAGAAATTGAAGAACA
261 ACTCACCTCTCGCAATATGAGTT-A---TTTTTTT--G-AC---------A-AACA
96804533 GAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTT
1 GAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTT
*
96804598 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTCGAGGCTCAACTCACCTCTCGCAATATGA
66 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
* *
96804663 GTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
131 GTTAATTTTTGAAAAACAGAAA-TTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTC
* *
96804728 GCAATATGAGTTGATTTTTTTTTACGAACAGAATTGAAGAACAGAAA-TTGAAAAGACCTCAGCA
195 GCAATATGAGTTGA----TTTTT-------G-ATTGAA-AACAGAAATTTAAAAATACCTCAGC-
* * *
96804792 TGTGAGCC-GAGGCTCAACTCACCTCTCGTAATATGAGTTA-ATTTTTGACAAACA
246 -GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTATTTTTTTGACAAACA
** **
96804846 GAAATTGAAATTACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 GAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
96804904 GATTATTAAA
Statistics
Matches: 620, Mismatches: 28, Indels: 59
0.88 0.04 0.08
Matches are distributed among these distances:
297 2 0.00
298 272 0.44
300 8 0.01
303 2 0.00
311 36 0.06
313 175 0.28
314 52 0.08
318 5 0.01
323 2 0.00
324 1 0.00
325 1 0.00
326 6 0.01
329 14 0.02
330 9 0.01
331 33 0.05
332 2 0.00
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (299 bp):
GAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTT
TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTAATTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTGATTGAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCA
ACTCACCTCTCGCAATATGAGTTATTTTTTTGACAAACA
Found at i:96804866 original size:238 final size:239
Alignment explanation
Indices: 96804291--96805665 Score: 1288
Period size: 238 Copynumber: 5.6 Consensus size: 239
96804281 ATTTTTGACA
** **
96804291 AACAGAAATTGAAATTACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
* * *
96804354 ATTTTTGACAAACAGAAATTGAAATTACCTCAGTGTGTCCCGAGGCTCAACTCACCTTTCGCAAT
66 ATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
* * *
96804419 ATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACATCGGCGTGTCCTGAGGCTCAACTCACC
131 ATGAGTTGATTTTTGAAAAACAGAAATTTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
96804484 TCTCGCAATATGAGTTGATTTTTTTTTTACGAACAGAAATTGAAG
196 TCTCGCAATATGAGTTGA-TTTTTTTTTACGAACAGAAATTGAAG
96804529 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
* *
96804594 ATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCTCGAGGCTCAACTCACCTCTCGCAAT
66 ATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
*
96804659 ATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
131 ATGAGTTGATTTTTGAAAAACAGAAATTTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
96804724 TCTCGCAATATGAGTTGATTTTTTTTTACGAACAG-AATTGAAG
196 TCTCGCAATATGAGTTGATTTTTTTTTACGAACAGAAATTGAAG
*
96804767 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGTAATATGAGTTA
1 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
*
96804832 ATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
66 ATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
* ** *
96804897 ATGAGTTGATTATT-AAAAAGCATAAATTGAAAAGCATAAATTGAAAATACCTCAATGTGCCCTG
131 ATGAGTTGATTTTTGAAAAA-C----A--G--AA--AT---TTGAAAATACCTCAGCGTGTCCTG
* * ** *
96804961 AGGCTCAACTCAACTCTTGCAATATGAGTTGATTTTTTTGAAACACAAAAATTAAAAAAAATAGA
182 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT------------TT---ACGAACAGA
*
96805026 AATTAAAG
232 AATTGAAG
* * * * *
96805034 -ACGGAATTTGAAAAGACCTCGGCGTGTG-GCCCGAGACTCAACTCACCTCTCGCAATATGAGTT
1 AACAGAAATTGAAAAGACCTCAGCATGTGAG-CCGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
96805097 GATTTTTGAAAAGTAGAAATTGAAAACGCAGAAATTGAAAATACCTTAGCGTGTCCCGAGGCTCA
65 -AATTTT------T-G--A---CAAA--CAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCA
* * * *
96805162 ACTCACCTTTCACAATGTGAGTTGATTTTTTTTGATAAAA-ATAGAATTTGAAAATACCTCAGCG
115 ACTCACCTCTCGCAATATGAGTTGA---TTTTTGA-AAAACAGA-AATTTGAAAATACCTCAGCG
* * *
96805226 TGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA----TTTTGACGAACAGAAATTGAAA
175 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACGAACAGAAATTGAAG
* * * * *
96805287 AACATAAATTGAAAATACCTCAGCACGTGAGCTGAGGCTCAACTCACCTCTCGTAATATGAGTTG
1 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-
* * **
96805352 GATTTTTGAAAAAAAAATTGACAAACGGAAATTGAAAATACCTCAGC--GTCTTGAGGCTCAACT
65 -A-ATTT----------TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACT
*
96805415 CACCTCTCGCAATATGAGTTGATTTTTTTTTTGAAAGAA-AGAAA-TTGAAAATACCTCAACGTG
118 CACCTCTCGCAATATGAGTTGA-----TTTTTGAAA-AACAGAAATTTGAAAATACCTCAGCGTG
* * *
96805478 TCTTGAGGCTCAACTTACCTCTCGCAATATGAGTTGA-ATTTTTTT-------G--A---AA-
177 TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTACGAACAGAAATTGAAG
* ** *
96805527 AACAGAAATT-AAAATTACCTCAGC--GTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTT
1 AACAGAAATTGAAAA-GACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * * ** *
96805589 GA-TTTTGA-AAACAAAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAA
65 AATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAA
*
96805652 TATGAGTTAATTTT
130 TATGAGTTGATTTT
96805666 CCTTGAAAAG
Statistics
Matches: 973, Mismatches: 87, Indels: 172
0.79 0.07 0.14
Matches are distributed among these distances:
220 4 0.00
223 21 0.02
224 4 0.00
225 36 0.04
234 2 0.00
237 5 0.01
238 205 0.21
239 21 0.02
240 198 0.20
241 2 0.00
242 1 0.00
244 2 0.00
246 3 0.00
248 2 0.00
250 85 0.09
251 61 0.06
252 34 0.03
253 16 0.02
254 54 0.06
255 3 0.00
256 5 0.01
257 1 0.00
259 1 0.00
260 1 0.00
263 2 0.00
265 1 0.00
266 61 0.06
267 12 0.01
268 3 0.00
272 50 0.05
273 1 0.00
274 1 0.00
275 2 0.00
276 2 0.00
277 1 0.00
279 3 0.00
280 1 0.00
281 57 0.06
284 4 0.00
285 1 0.00
286 4 0.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (239 bp):
AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
ATTTTTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
ATGAGTTGATTTTTGAAAAACAGAAATTTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACC
TCTCGCAATATGAGTTGATTTTTTTTTACGAACAGAAATTGAAG
Found at i:96804879 original size:164 final size:163
Alignment explanation
Indices: 96804604--96804907 Score: 486
Period size: 164 Copynumber: 1.9 Consensus size: 163
96804594 ATTTTTGACA
** * *
96804604 AACAGAAATTGAAATTACCTCAGCGTGTCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAAGACCTCAGCGTGGCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTAAT
*
96804669 TTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
66 TTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
96804734 TGAGTTGATTTTTTTTTACGAACAGAATTGAAG
131 TGAGTTGATTTTTTTTTACGAACAGAATTGAAG
*
96804767 AACAGAAATTGAAAAGACCTCAGCATGTGAGC-CGAGGCTCAACTCACCTCTCGTAATATGAGTT
1 AACAGAAATTGAAAAGACCTCAGC--GTG-GCTCGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
96804831 AATTTTTGACAAACAGAAA-TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
63 AATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCA
96804895 ATATGAGTTGATT
128 ATATGAGTTGATT
96804908 ATTAAAAAGC
Statistics
Matches: 129, Mismatches: 9, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
163 22 0.17
164 55 0.43
165 51 0.40
166 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.28
Consensus pattern (163 bp):
AACAGAAATTGAAAAGACCTCAGCGTGGCTCGAGGCTCAACTCACCTCTCGCAATATGAGTTAAT
TTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATA
TGAGTTGATTTTTTTTTACGAACAGAATTGAAG
Found at i:96804931 original size:14 final size:14
Alignment explanation
Indices: 96804912--96804943 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
96804902 TTGATTATTA
96804912 AAAAGCATAAATTG
1 AAAAGCATAAATTG
96804926 AAAAGCATAAATTG
1 AAAAGCATAAATTG
96804940 AAAA
1 AAAA
96804944 TACCTCAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.62, C:0.06, G:0.12, T:0.19
Consensus pattern (14 bp):
AAAAGCATAAATTG
Found at i:96805121 original size:14 final size:15
Alignment explanation
Indices: 96805102--96805137 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
96805092 GAGTTGATTT
*
96805102 TTGAAAA-GTAGAAA
1 TTGAAAACGCAGAAA
96805116 TTGAAAACGCAGAAA
1 TTGAAAACGCAGAAA
96805131 TTGAAAA
1 TTGAAAA
96805138 TACCTTAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.56, C:0.06, G:0.19, T:0.19
Consensus pattern (15 bp):
TTGAAAACGCAGAAA
Found at i:96805261 original size:78 final size:76
Alignment explanation
Indices: 96805126--96805268 Score: 205
Period size: 78 Copynumber: 1.9 Consensus size: 76
96805116 TTGAAAACGC
* * * * *
96805126 AGAAATTGAAAATACCTTAGCGTGTCCCGAGGCTCAACTCACCTTTCACAATGTGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
96805191 TTTTGATAAAAA
66 TTTTGA-AAAAA
* *
96805203 TAGAATTTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
1 -AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
96805268 T
65 T
96805269 GACGAACAGA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
78 60 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.31
Consensus pattern (76 bp):
AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTTTGAAAAAA
Found at i:96805345 original size:88 final size:82
Alignment explanation
Indices: 96805070--96805440 Score: 279
Period size: 88 Copynumber: 4.4 Consensus size: 82
96805060 TGGCCCGAGA
* *
96805070 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGTAGAAATTGAAAACGCAGAAATTGA
1 CTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAA--AAAAATTGAAAA-ACAGAAATTGA
* *
96805135 AAATACCTTAGCGTGTCCCGAGG
62 AAATACCTCAGCGTG--CTGAGG
* * * *** * * *** * *
96805158 CTCAACTCACCTTTCACAATGTGAGTTGATTTTTTTTGATAAAAA-T-AGAATTTGAAAAT--AC
1 CTCAACTCACCTCTCGCAATATGAGTTGA--TTTTGAAAAAAAAATTGAAAAACAGAAATTGAAA
* ** * * *
96805219 CT-CAGC-GTGTCCCGAGG
64 ATACCTCAGCGTGCTGAGG
* * *
96805236 CTCAACTCACCTCTCGCAATATGAGTTGATTTTGACGAACAGAAATTGAAAAACATAAATTGAAA
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTTGA--AAAAAAAATTGAAAAACAGAAATTGAAA
96805301 ATACCTCAGCACGTGAGCTGAGG
64 ATACCTCAG--CGT--GCTGAGG
* * *
96805324 CTCAACTCACCTCTCGTAATATGAGTTGGATTTTTGAAAAAAAAATTGACAAACGGAAATTGAAA
1 CTCAACTCACCTCTCGCAATATGAGTT-GA-TTTTGAAAAAAAAATTGAAAAACAGAAATTGAAA
96805389 ATACCTCAGCGT-CTTGAGG
64 ATACCTCAGCGTGC-TGAGG
96805408 CTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 CTCAACTCACCTCTCGCAATATGAGTTGATTTT
96805441 TTTTTTGAAA
Statistics
Matches: 219, Mismatches: 48, Indels: 38
0.72 0.16 0.12
Matches are distributed among these distances:
76 4 0.02
78 37 0.17
79 1 0.00
80 10 0.05
81 1 0.00
82 8 0.04
83 5 0.02
84 37 0.17
85 3 0.01
86 6 0.03
87 4 0.02
88 89 0.41
89 8 0.04
90 6 0.03
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (82 bp):
CTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAAAAAATTGAAAAACAGAAATTGAAAAT
ACCTCAGCGTGCTGAGG
Found at i:96805442 original size:84 final size:83
Alignment explanation
Indices: 96805198--96805441 Score: 294
Period size: 88 Copynumber: 2.8 Consensus size: 83
96805188 TTTTTTTGAT
* * *
96805198 AAAAATAGAATTTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAAATACCTCAGC--GT-CTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
96805263 GA-TTTTGACGAACAGAAATTG
63 GATTTTTGAC-AAAAAAAATTG
* *
96805284 AAAAACATAAATTGAAAATACCTCAGCACGTGAGCTGAGGCTCAACTCACCTCTCGTAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAG--CGT---CTGAGGCTCAACTCACCTCTCGCAATATGAG
96805349 TTGGATTTTTGA-AAAAAAAATTG
61 TT-GATTTTTGACAAAAAAAATTG
* *
96805372 ACAAACGGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 AAAAACAGAAATTGAAAATACCTCAGCGTC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
96805437 TTTTT
65 TTTTT
96805442 TTTTTGAAAG
Statistics
Matches: 139, Mismatches: 12, Indels: 17
0.83 0.07 0.10
Matches are distributed among these distances:
83 8 0.06
84 31 0.22
86 28 0.20
88 64 0.46
89 2 0.01
90 6 0.04
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.27
Consensus pattern (83 bp):
AAAAACAGAAATTGAAAATACCTCAGCGTCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGACAAAAAAAATTG
Found at i:96805524 original size:76 final size:75
Alignment explanation
Indices: 96805379--96805674 Score: 367
Period size: 76 Copynumber: 4.0 Consensus size: 75
96805369 TTGACAAACG
* *
96805379 GAAATTGAAAATACCTC-A-GCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA--ATT
96805442 TTTTTGAAAGAAA
64 TTTTTGAAA-AAA
*
96805455 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTTACCTCTCGCAATATGAGTTGAATTTT
1 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTT
96805520 TTTGAAAAACA
66 TTTGAAAAA-A
* * ** *
96805531 GAAATT-AAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTG-A---
1 GAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTT
96805591 TTTTGAAAACAA
65 TTTTGAAAA-AA
* *
96805603 -AAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTT-AATTTT
1 GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTT
*
96805666 CCTTGAAAA
66 -TTTGAAAA
96805675 GCATGAATTA
Statistics
Matches: 193, Mismatches: 16, Indels: 23
0.83 0.07 0.10
Matches are distributed among these distances:
71 47 0.24
72 14 0.07
73 1 0.01
74 1 0.01
75 14 0.07
76 77 0.40
77 1 0.01
78 38 0.20
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (75 bp):
GAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTT
TTTGAAAAAA
Found at i:96805647 original size:147 final size:146
Alignment explanation
Indices: 96805369--96805687 Score: 405
Period size: 147 Copynumber: 2.1 Consensus size: 146
96805359 GAAAAAAAAA
* * **
96805369 TTGACAAACGGAAATTGAAAATACCTCAGCGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 TTGAAAAACAGAAATT-AAAATACCTCAGCGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGT
* *
96805434 TGATTTTTTTTTTGAAAGAAAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTTACCTC
65 TGA-----TTTTTGAAAGAAAGAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTC
*
96805499 TCGCAATATGAGTTGAATTTT-T
125 TCGCAATATGAGTT-AATTTTCC
*
96805521 TTGAAAAACAGAAATTAAAATTACCTCAGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGA
1 TTGAAAAACAGAAATTAAAA-TACCTCAGCGT--CCCGAGGCTCAACTCACCTCTCGCAATATGA
*
96805586 GTTGA-TTTTGAAA-ACAA-AAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTC
63 GTTGATTTTTGAAAGA-AAGAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTC
96805648 GCAATATGAGTTAATTTTCC
127 GCAATATGAGTTAATTTTCC
*
96805668 TTGAAAAGCATG-AATTAAAA
1 TTGAAAAACA-GAAATTAAAA
96805688 ATATCAAAAT
Statistics
Matches: 151, Mismatches: 10, Indels: 17
0.85 0.06 0.10
Matches are distributed among these distances:
146 6 0.04
147 72 0.48
148 11 0.07
151 4 0.03
152 25 0.17
154 33 0.22
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (146 bp):
TTGAAAAACAGAAATTAAAATACCTCAGCGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAGAAAGAAATTAAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAA
TATGAGTTAATTTTCC
Found at i:96814536 original size:32 final size:32
Alignment explanation
Indices: 96814497--96814565 Score: 120
Period size: 32 Copynumber: 2.2 Consensus size: 32
96814487 GCTATTATAG
* *
96814497 CACGAAGCCTCGGTCATAACTCATTACAGGCT
1 CACGAAGCCTCGGTCATAACCCATCACAGGCT
96814529 CACGAAGCCTCGGTCATAACCCATCACAGGCT
1 CACGAAGCCTCGGTCATAACCCATCACAGGCT
96814561 CACGA
1 CACGA
96814566 GTTCAATTCG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.29, C:0.35, G:0.19, T:0.17
Consensus pattern (32 bp):
CACGAAGCCTCGGTCATAACCCATCACAGGCT
Found at i:96815578 original size:16 final size:15
Alignment explanation
Indices: 96815557--96815604 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
96815547 GATGTGAATA
96815557 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
96815573 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
96815588 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
96815604 A
1 A
96815605 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:96815580 original size:24 final size:24
Alignment explanation
Indices: 96815553--96815608 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
96815543 TAATGATGTG
*
96815553 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
96815577 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
96815601 AATAATAA
1 AATAATAA
96815609 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:96815587 original size:8 final size:8
Alignment explanation
Indices: 96815553--96815604 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
96815543 TAATGATGTG
*
96815553 AATAATAA
1 AATATTAA
96815561 AATATATAA
1 AATAT-TAA
96815570 AATA-TAA
1 AATATTAA
96815577 AATATTAA
1 AATATTAA
*
96815585 AATATCAA
1 AATATTAA
*
96815593 AATATTAG
1 AATATTAA
96815601 AATA
1 AATA
96815605 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Done.