Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 285 of 295
Found at i:96815867 original size:25 final size:25
Alignment explanation
Indices: 96815751--96815961 Score: 131
Period size: 25 Copynumber: 8.7 Consensus size: 25
96815741 TAAATACGTG
*
96815751 ATAATATTAAAAATATGTACATAAT
1 ATAATATTAAAAATATATACATAAT
* * *
96815776 ATAGTGTTAAAAATACATACATAAT
1 ATAATATTAAAAATATATACATAAT
* * *
96815801 AT-A-GTT-AAGATATATACATAAG
1 ATAATATTAAAAATATATACATAAT
* *
96815823 ATAACATGTAAAAAAAATATATAAATAAT
1 ATAATAT-T---AAAAATATATACATAAT
* *
96815852 ATAATATTAAAGATATATACATAAA
1 ATAATATTAAAAATATATACATAAT
* * *
96815877 ATAGTA-T-AATATATATACGTAAT
1 ATAATATTAAAAATATATACATAAT
* *
96815900 ATAGA-ATT-TAAA-ATATACCT-A-
1 ATA-ATATTAAAAATATATACATAAT
*
96815921 AT-ATATTAAAAGA-ATATATATAAT
1 ATAATATTAAAA-ATATATACATAAT
96815945 ATAATATTAAAAATATA
1 ATAATATTAAAAATATA
96815962 ATAATAACAA
Statistics
Matches: 143, Mismatches: 27, Indels: 32
0.71 0.13 0.16
Matches are distributed among these distances:
19 1 0.01
20 3 0.02
21 4 0.03
22 23 0.16
23 29 0.20
24 8 0.06
25 55 0.38
28 1 0.01
29 19 0.13
ACGTcount: A:0.56, C:0.04, G:0.06, T:0.34
Consensus pattern (25 bp):
ATAATATTAAAAATATATACATAAT
Found at i:96816525 original size:30 final size:30
Alignment explanation
Indices: 96816455--96816569 Score: 142
Period size: 30 Copynumber: 3.8 Consensus size: 30
96816445 TAGGTACAAG
* * *
96816455 TGGTGGTGGAGCAAGTGTGGTTAGTGGAGT
1 TGGTGGTGGAGAAAGTGTGGCTAGTAGAGT
* ** * *
96816485 AGGTAATGGAGCAAGTGTGGCTAGTAGATT
1 TGGTGGTGGAGAAAGTGTGGCTAGTAGAGT
96816515 TGGTGGTGGAGAAAGTGTGGCTAGTAGAGT
1 TGGTGGTGGAGAAAGTGTGGCTAGTAGAGT
96816545 TGGTGGTGGA-AAAGGTGTGGCTAGT
1 TGGTGGTGGAGAAA-GTGTGGCTAGT
96816570 TGAGAAAAGT
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
29 3 0.04
30 70 0.96
ACGTcount: A:0.23, C:0.04, G:0.45, T:0.28
Consensus pattern (30 bp):
TGGTGGTGGAGAAAGTGTGGCTAGTAGAGT
Found at i:96818167 original size:18 final size:18
Alignment explanation
Indices: 96818147--96818181 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
96818137 AACTTTGTTT
*
96818147 TTTTGTTT-TTTGCTTTG
1 TTTTGTTTGTTTGATTTG
96818164 TTTTGTTTGTTTGATTTG
1 TTTTGTTTGTTTGATTTG
96818182 AGTATTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.03, C:0.03, G:0.20, T:0.74
Consensus pattern (18 bp):
TTTTGTTTGTTTGATTTG
Found at i:96818172 original size:21 final size:21
Alignment explanation
Indices: 96818130--96818175 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 21
96818120 ACTGTAATTT
96818130 TTTTTTGAACTTTGTTTTTTTG
1 TTTTTTG-ACTTTGTTTTTTTG
96818152 TTTTTTG-CTTTGTTTTGTTTG
1 TTTTTTGACTTTGTTTT-TTTG
96818173 TTT
1 TTT
96818176 GATTTGAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 9 0.39
21 7 0.30
22 7 0.30
ACGTcount: A:0.04, C:0.04, G:0.15, T:0.76
Consensus pattern (21 bp):
TTTTTTGACTTTGTTTTTTTG
Found at i:96821731 original size:21 final size:21
Alignment explanation
Indices: 96821705--96821747 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
96821695 GGTTCGCTGT
*
96821705 ATTGGATTAGAGGTGTATTGG
1 ATTGGATTAGAGGTGTAATGG
96821726 ATTGGATTAGAGGTGTAATGG
1 ATTGGATTAGAGGTGTAATGG
96821747 A
1 A
96821748 ATAGAGGTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (21 bp):
ATTGGATTAGAGGTGTAATGG
Found at i:96821747 original size:16 final size:16
Alignment explanation
Indices: 96821728--96821760 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
96821718 TGTATTGGAT
*
96821728 TGGATTAGAGGTGTAA
1 TGGAATAGAGGTGTAA
96821744 TGGAATAGAGGTGTAA
1 TGGAATAGAGGTGTAA
96821760 T
1 T
96821761 AGCAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.36, T:0.30
Consensus pattern (16 bp):
TGGAATAGAGGTGTAA
Found at i:96821805 original size:45 final size:44
Alignment explanation
Indices: 96821739--96821833 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
96821729 GGATTAGAGG
* *
96821739 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
96821784 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
96821828 TGTAAT
1 TGTAAT
96821834 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:96822016 original size:18 final size:17
Alignment explanation
Indices: 96821995--96822029 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
96821985 TTATTATTTA
*
96821995 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
96822013 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
96822030 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:96822023 original size:28 final size:27
Alignment explanation
Indices: 96821953--96822025 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
96821943 TTTATTATCA
*
96821953 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
96821981 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
96822008 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
96822026 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:96822142 original size:144 final size:147
Alignment explanation
Indices: 96821914--96822185 Score: 487
Period size: 144 Copynumber: 1.9 Consensus size: 147
96821904 ATGATTATTG
96821914 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTA--TATTATCAAAAATAAATAATTTAATCATATTTAA
*
96821979 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
64 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
96822044 AGAAATTTGTTTTGGTAAA
129 AGAAATTTGTTTTGGTAAA
*
96822063 TTATT-TTATTTAAATTTTAATAAGATTA-A-TATCAATAATAAATAATTTAATCATATTTAAAC
1 TTATTGTTATTTAAATTTTAATAAGATTATATTATCAAAAATAAATAATTTAATCATATTTAAAC
96822125 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
96822186 ATATTCTTAT
Statistics
Matches: 121, Mismatches: 2, Indels: 5
0.95 0.02 0.04
Matches are distributed among these distances:
144 92 0.76
145 1 0.01
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TTATTGTTATTTAAATTTTAATAAGATTATATTATCAAAAATAAATAATTTAATCATATTTAAAC
ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGCAG
AAATTTGTTTTGGTAAA
Found at i:96822160 original size:18 final size:17
Alignment explanation
Indices: 96822139--96822173 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
96822129 TTATTATTAA
*
96822139 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
96822157 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
96822174 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:96822217 original size:54 final size:54
Alignment explanation
Indices: 96822159--96822337 Score: 128
Period size: 55 Copynumber: 3.1 Consensus size: 54
96822149 ATTAAAATAT
*
96822159 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
** * * * * *
96822213 ATAATATATGATACTGTAAAATAT-AAAATAACATAATTATTATTAAATAT-AATATAATTAAAA
1 ATAAT-T-T-A-A---TAAAAT-TCTTAATAA-TTAA-TATTCTT--ATATGAAT-TTACTCAAA
*
96822276 TAT
53 -AC
*
96822279 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATC
1 ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
96822333 ATAAT
1 ATAAT
96822338 ATATGATTAT
Statistics
Matches: 91, Mismatches: 18, Indels: 32
0.65 0.13 0.23
Matches are distributed among these distances:
54 10 0.11
55 11 0.12
56 4 0.04
57 7 0.08
58 5 0.05
59 11 0.12
61 11 0.12
62 5 0.05
63 7 0.08
64 4 0.04
65 11 0.12
66 5 0.05
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (54 bp):
ATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAAC
Found at i:96822219 original size:61 final size:61
Alignment explanation
Indices: 96822154--96822341 Score: 190
Period size: 61 Copynumber: 3.1 Consensus size: 61
96822144 TTTTAATTAA
*
96822154 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAACCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * * * * * *
96822215 AATATATGATACT-GTAAAA-T-ATAA-AATAACATAATTATTAT-TAAATATAAT-ATAATTAA
1 AATATATAAT-TTAATAAAATTCTTAATAATTA-AT-ATTCTTATATGAATTTACTCA-AATCAT
96822274 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
96822335 AATATAT
1 AATATAT
96822342 GATTATAACT
Statistics
Matches: 94, Mismatches: 23, Indels: 20
0.69 0.17 0.15
Matches are distributed among these distances:
58 6 0.06
59 29 0.31
60 16 0.17
61 37 0.39
62 6 0.06
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.41
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
Found at i:96822252 original size:120 final size:120
Alignment explanation
Indices: 96822122--96822344 Score: 419
Period size: 120 Copynumber: 1.9 Consensus size: 120
96822112 ATCATATTTA
* *
96822122 AACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
96822187 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
96822242 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
96822307 TATTCTTATATGAATTTACTCAAATCATAATATATGAT
66 TATTCTTATATGAATTTACTCAAACCATAATATATGAT
96822345 TATAACTAAT
Statistics
Matches: 100, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 100 1.00
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATAATATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAACCATAATATATGATACTGTAAAATATAAAAT
Found at i:96822280 original size:18 final size:17
Alignment explanation
Indices: 96822259--96822293 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
96822249 TTATTATTAA
96822259 ATATAATATAATTAAAAT
1 ATATAATATAA-TAAAAT
*
96822277 ATATAATTTAATAAAAT
1 ATATAATATAATAAAAT
96822294 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATATAATATAATAAAAT
Found at i:96822356 original size:17 final size:16
Alignment explanation
Indices: 96822334--96822380 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
96822324 ACTCAAATCA
96822334 TAATATATGATTATAAC
1 TAATATATGATT-TAAC
*
96822351 T-A-ATATGATTTAAT
1 TAATATATGATTTAAC
96822365 TAAATATATGATTTAA
1 T-AATATATGATTTAA
96822381 TAAAATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 4 0.15
15 8 0.31
16 2 0.08
17 12 0.46
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (16 bp):
TAATATATGATTTAAC
Found at i:96822381 original size:17 final size:17
Alignment explanation
Indices: 96822353--96822386 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
96822343 ATTATAACTA
*
96822353 ATATGATTTAATTAAAT
1 ATATGATTTAATAAAAT
96822370 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
96822387 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Found at i:96822529 original size:93 final size:92
Alignment explanation
Indices: 96822419--96822613 Score: 286
Period size: 93 Copynumber: 2.1 Consensus size: 92
96822409 GATTATAGTT
* * *
96822419 TATGAATTTGTATAATTTAAAATAA-TAATTATTACATATAATT-TAATAATAATATATAATTTC
1 TATGAATTTATACAATTTAAAATAATTAA-TATTAAATATAATTAT-ATAATAATATATAATTTC
* *
96822482 ATAAAATTCTTGATAATAAAAATTTTCTTA
64 ATAAAATTCTTAATAAT-AAAATGTTCTTA
* *
96822512 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAGTGATATATAATTTCAT
1 TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
96822577 AAAATTCTTAATAATAAAATGTTCTTA
66 AAAATTCTTAATAATAAAATGTTCTTA
96822604 TATGAATTTA
1 TATGAATTTA
96822614 CTAAAATCAA
Statistics
Matches: 93, Mismatches: 7, Indels: 5
0.89 0.07 0.05
Matches are distributed among these distances:
92 21 0.23
93 68 0.73
94 4 0.04
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (92 bp):
TATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTATATAATAATATATAATTTCAT
AAAATTCTTAATAATAAAATGTTCTTA
Found at i:96829578 original size:39 final size:39
Alignment explanation
Indices: 96829535--96829752 Score: 312
Period size: 39 Copynumber: 5.6 Consensus size: 39
96829525 GCTCTAGTGA
96829535 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTCTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTCTGT
*
96829574 GCTTCAGTCT-GCCTTCGAGCTTCCGTTTAGCACTTCTGT
1 GCTTCAGT-TAGCCTTCGGGCTTCCGTTTAGCACTTCTGT
* * *
96829613 GCTTCAGTCAACCTTCGGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTCTGT
* *
96829652 GCTTCAGTTAGCCTTTGGGCTTCCGTTTAGCACTTGTGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTCTGT
* * *
96829691 GCTTTAGTTAGCCTCCGGGCTTCCGTTTAGCACTTATGT
1 GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTCTGT
* **
96829730 GCTTCAGCTAAACTTCGGGCTTC
1 GCTTCAGTTAGCCTTCGGGCTTC
96829753 AGATCACGAA
Statistics
Matches: 160, Mismatches: 17, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
39 159 0.99
40 1 0.01
ACGTcount: A:0.12, C:0.28, G:0.23, T:0.38
Consensus pattern (39 bp):
GCTTCAGTTAGCCTTCGGGCTTCCGTTTAGCACTTCTGT
Found at i:96840059 original size:4 final size:4
Alignment explanation
Indices: 96840050--96840086 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
96840040 AGCAAACGTG
96840050 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
1 AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA AGAA A
96840087 TAGAAAAGGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AGAA
Found at i:96846888 original size:17 final size:17
Alignment explanation
Indices: 96846868--96846900 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
96846858 TTAAAAATTA
96846868 AAAATATATAAA-TTATT
1 AAAATA-ATAAACTTATT
96846885 AAAATAATAAACTTAT
1 AAAATAATAAACTTAT
96846901 ATTTTAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (17 bp):
AAAATAATAAACTTATT
Found at i:96849444 original size:39 final size:40
Alignment explanation
Indices: 96849400--96849480 Score: 128
Period size: 39 Copynumber: 2.0 Consensus size: 40
96849390 TATTTAGTAC
* *
96849400 AATAAAATATTTATTATATTTAT-TTAGTCTTTTTAATAT
1 AATAAAACATTTATTATATTTATGATAGTCTTTTTAATAT
*
96849439 AATAAAACATTTATTATATTTATGATAGTGTTTTTAATAT
1 AATAAAACATTTATTATATTTATGATAGTCTTTTTAATAT
96849479 AA
1 AA
96849481 ATATTTTTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
39 22 0.58
40 16 0.42
ACGTcount: A:0.41, C:0.02, G:0.05, T:0.52
Consensus pattern (40 bp):
AATAAAACATTTATTATATTTATGATAGTCTTTTTAATAT
Found at i:96849833 original size:11 final size:11
Alignment explanation
Indices: 96849819--96849847 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
96849809 ATTATTAAAT
96849819 AATTAATATTA
1 AATTAATATTA
96849830 AATTAATATTA
1 AATTAATATTA
96849841 AATTAAT
1 AATTAAT
96849848 TATAGAATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
AATTAATATTA
Found at i:96850848 original size:18 final size:19
Alignment explanation
Indices: 96850821--96850859 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
96850811 CTAAAGGTGA
* *
96850821 TTTCTTTTTTTTTTTC-TT
1 TTTCTATTTTTATTTCGTT
96850839 TTTCTATTTTTATTTCGTT
1 TTTCTATTTTTATTTCGTT
96850858 TT
1 TT
96850860 AAAGCCTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.05, C:0.10, G:0.03, T:0.82
Consensus pattern (19 bp):
TTTCTATTTTTATTTCGTT
Found at i:96854357 original size:29 final size:30
Alignment explanation
Indices: 96854290--96854357 Score: 86
Period size: 29 Copynumber: 2.3 Consensus size: 30
96854280 ATAATGTCAC
96854290 ATTTAGTACTTATACTTTTACAAATATTTA
1 ATTTAGTACTTATACTTTTACAAATATTTA
* * *
96854320 ATGTGGTACTTGTA-TTTTGA-AAATATTTA
1 ATTTAGTACTTATACTTTT-ACAAATATTTA
96854349 ATTTAGTAC
1 ATTTAGTAC
96854358 ATGAATTATC
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
29 20 0.62
30 12 0.38
ACGTcount: A:0.34, C:0.07, G:0.10, T:0.49
Consensus pattern (30 bp):
ATTTAGTACTTATACTTTTACAAATATTTA
Found at i:96860019 original size:30 final size:30
Alignment explanation
Indices: 96859984--96860046 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
96859974 TTTTATTTTA
96859984 TTGTTAATTTTCTTATTATTTTA-AAGGCAT
1 TTGTTAATTTTCTTATTATTTTAGAA-GCAT
*
96860014 TTGTTAATTTTTTTATTATTTTAGAAGCAT
1 TTGTTAATTTTCTTATTATTTTAGAAGCAT
96860044 TTG
1 TTG
96860047 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 29 0.94
31 2 0.06
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAGAAGCAT
Found at i:96864747 original size:22 final size:23
Alignment explanation
Indices: 96864670--96864835 Score: 150
Period size: 23 Copynumber: 7.3 Consensus size: 23
96864660 GCCATGATCG
*
96864670 GTAAGCTCTTCTTGAGCTGATAAACA
1 GTAAGCTC-TATTGAGCTG--AAACA
* * *
96864696 ATAAGCTCTATTAAGCTGAAACG
1 GTAAGCTCTATTGAGCTGAAACA
96864719 GTAAGCTCTATTGAGCTG-AACA
1 GTAAGCTCTATTGAGCTGAAACA
**
96864741 GTAAGCTC-A-T-A-C-GAAATG
1 GTAAGCTCTATTGAGCTGAAACA
*
96864759 GTAAGCTCTAGTGAGCTGAAAACA
1 GTAAGCTCTATTGAGCTG-AAACA
*
96864783 GTAAGCT-TCATTGAGCTGAAACG
1 GTAAGCTCT-ATTGAGCTGAAACA
*
96864806 GTAAGCTCTATCGAGCT-AAACA
1 GTAAGCTCTATTGAGCTGAAACA
96864828 GTAAGCTC
1 GTAAGCTC
96864836 ATACGAGCTG
Statistics
Matches: 116, Mismatches: 15, Indels: 22
0.76 0.10 0.14
Matches are distributed among these distances:
17 1 0.01
18 11 0.09
19 2 0.02
20 2 0.02
21 2 0.02
22 24 0.21
23 40 0.34
24 19 0.16
25 8 0.07
26 7 0.06
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (23 bp):
GTAAGCTCTATTGAGCTGAAACA
Found at i:96864774 original size:40 final size:39
Alignment explanation
Indices: 96864713--96864841 Score: 150
Period size: 40 Copynumber: 3.1 Consensus size: 39
96864703 CTATTAAGCT
96864713 GAAACGGTAAGCTCTATTGAGCTGAACAGTAAGCTCATAC
1 GAAACGGTAAGCTCTA-TGAGCTGAACAGTAAGCTCATAC
*
96864753 GAAATGGTAAGCTCTAGTGAGCTGAAAACAGTAAGCTTCATTGAGC
1 GAAACGGTAAGCTCTA-TGAGCTG--AACAGTAAGC-TCA-T-A-C
*
96864799 TGAAACGGTAAGCTCTATCGAGCTAAACAGTAAGCTCATAC
1 -GAAACGGTAAGCTCTAT-GAGCTGAACAGTAAGCTCATAC
96864840 GA
1 GA
96864842 GCTGTGGTGA
Statistics
Matches: 77, Mismatches: 4, Indels: 16
0.79 0.04 0.16
Matches are distributed among these distances:
40 24 0.31
41 1 0.01
42 11 0.14
43 4 0.05
44 4 0.05
45 11 0.14
46 2 0.03
47 20 0.26
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (39 bp):
GAAACGGTAAGCTCTATGAGCTGAACAGTAAGCTCATAC
Found at i:96864837 original size:87 final size:88
Alignment explanation
Indices: 96864682--96864841 Score: 261
Period size: 87 Copynumber: 1.8 Consensus size: 88
96864672 AAGCTCTTCT
* *
96864682 TGAGCTGATAAACAATAAGCTCTATTAAGCTGAAACGGTAAGCTCTATTGAGCTGAACAGTAAGC
1 TGAGCTGATAAACAATAAGCTCTATTAAGCTGAAACGGTAAGCTCTATCGAGCTAAACAGTAAGC
96864747 TCATACGAAATGGTAAGCTCTAG
66 TCATACGAAATGGTAAGCTCTAG
* *
96864770 TGAGCTGA-AAACAGTAAGCT-TCATTGAGCTGAAACGGTAAGCTCTATCGAGCTAAACAGTAAG
1 TGAGCTGATAAACAATAAGCTCT-ATTAAGCTGAAACGGTAAGCTCTATCGAGCTAAACAGTAAG
96864833 CTCATACGA
65 CTCATACGA
96864842 GCTGTGGTGA
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
86 1 0.01
87 58 0.87
88 8 0.12
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (88 bp):
TGAGCTGATAAACAATAAGCTCTATTAAGCTGAAACGGTAAGCTCTATCGAGCTAAACAGTAAGC
TCATACGAAATGGTAAGCTCTAG
Found at i:96864842 original size:22 final size:23
Alignment explanation
Indices: 96864709--96864845 Score: 89
Period size: 22 Copynumber: 6.2 Consensus size: 23
96864699 AGCTCTATTA
* *
96864709 AGCTGAAACGGTAAGCTC-TATTG
1 AGCTGAAACAGTAAGCTCATA-CG
96864732 AGCTG-AACAGTAAGCTCAT---
1 AGCTGAAACAGTAAGCTCATACG
** *
96864751 A-C-GAAATGGTAAGCTC-TAGTG
1 AGCTGAAACAGTAAGCTCATA-CG
*
96864772 AGCTGAAAACAGTAAGCTTCAT-TG
1 AGCTG-AAACAGTAAGC-TCATACG
*
96864796 AGCTGAAACGGTAAGCTC-TATCG
1 AGCTGAAACAGTAAGCTCATA-CG
96864819 AGCT-AAACAGTAAGCTCATACG
1 AGCTGAAACAGTAAGCTCATACG
96864841 AGCTG
1 AGCTG
96864846 TGGTGAGTCT
Statistics
Matches: 91, Mismatches: 8, Indels: 30
0.71 0.06 0.23
Matches are distributed among these distances:
17 2 0.02
18 11 0.12
19 1 0.01
21 2 0.02
22 32 0.35
23 24 0.26
24 16 0.18
25 2 0.02
26 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.24, T:0.23
Consensus pattern (23 bp):
AGCTGAAACAGTAAGCTCATACG
Found at i:96870387 original size:22 final size:22
Alignment explanation
Indices: 96870353--96870395 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
96870343 ATAAAAATAA
96870353 AAAAAAGAGAAATAATGTAAAAG
1 AAAAAAGAGAAATAAT-TAAAAG
*
96870376 AAAAAATA-AAATAATTAAAA
1 AAAAAAGAGAAATAATTAAAA
96870396 AATATTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 7 0.37
23 7 0.37
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.16
Consensus pattern (22 bp):
AAAAAAGAGAAATAATTAAAAG
Found at i:96875253 original size:6 final size:6
Alignment explanation
Indices: 96875244--96875271 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
96875234 TTATTATACC
96875244 AAAACA AAAACA AAAACA AAAACA AAAA
1 AAAACA AAAACA AAAACA AAAACA AAAA
96875272 AAACCCAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (6 bp):
AAAACA
Found at i:96877325 original size:57 final size:57
Alignment explanation
Indices: 96877209--96877324 Score: 144
Period size: 57 Copynumber: 2.0 Consensus size: 57
96877199 ATGGTATTTG
* * * *
96877209 AAATATATACATGACGTGTATAAAGATATAATATTAAAAAGATATGTACGTAATATAT
1 AAATATATACATGAC-TATATAAAAATATAATATTAAAAAGATATATACATAATATAT
*
96877267 AAATATATACATGA-TATATAGAAAATATAATATTTAAAAGAATAATATACATAATATA
1 AAATATATACATGACTATATA-AAAATATAATATTAAAAAG-AT-ATATACATAATATA
96877325 AGAGTATTTA
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
56 5 0.10
57 17 0.34
58 16 0.32
59 12 0.24
ACGTcount: A:0.54, C:0.04, G:0.09, T:0.33
Consensus pattern (57 bp):
AAATATATACATGACTATATAAAAATATAATATTAAAAAGATATATACATAATATAT
Found at i:96877721 original size:22 final size:22
Alignment explanation
Indices: 96877693--96877739 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
96877683 ATAATATTAG
*
96877693 AATAATAATGACAATATTTAAT
1 AATAATAATAACAATATTTAAT
* *
96877715 AATAATAATAACATTTTTTAAT
1 AATAATAATAACAATATTTAAT
96877737 AAT
1 AAT
96877740 GAAACAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (22 bp):
AATAATAATAACAATATTTAAT
Found at i:96879678 original size:89 final size:88
Alignment explanation
Indices: 96879515--96879745 Score: 249
Period size: 89 Copynumber: 2.6 Consensus size: 88
96879505 GTGATCTTGA
* * * *
96879515 GCTCAACTCATTTCTCGCAATATGAATTGACTCTTT-AAATA-CAGACATT-AAAAACAGAAATT
1 GCTCAACTCACTTCTCGCAATATGGATTGACTTTTTGAAA-AGCAGAAATTGAAAAACAGAAATT
* *
96879577 GAAAATAGCTCAGCACGTGAGCC-AAT
65 GAAAATACCTCAG--CGTG-GCCTAAG
* * *
96879603 GCTCAACTCACTTCTCGCAATATGGATTG-GTTTTTGAAAAGCATAAATTGAAAAACGGAAATTG
1 GCTCAACTCACTTCTCGCAATATGGATTGACTTTTTGAAAAGCAGAAATTGAAAAACAGAAATTG
* *
96879667 AAAATACCTCAGCGTGTCCTGAG
66 AAAATACCTCAGCGTGGCCTAAG
* *
96879690 GCTCAACTCACCTCTCGCAATAT-GAGTTGATTTTTTTGAAAAGCAGAAATTGAAAA
1 GCTCAACTCACTTCTCGCAATATGGA-TTGA-CTTTTTGAAAAGCAGAAATTGAAAA
96879746 TACCTCAGCG
Statistics
Matches: 122, Mismatches: 14, Indels: 13
0.82 0.09 0.09
Matches are distributed among these distances:
86 4 0.03
87 35 0.29
88 36 0.30
89 47 0.39
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (88 bp):
GCTCAACTCACTTCTCGCAATATGGATTGACTTTTTGAAAAGCAGAAATTGAAAAACAGAAATTG
AAAATACCTCAGCGTGGCCTAAG
Found at i:96879773 original size:75 final size:75
Alignment explanation
Indices: 96879650--96879821 Score: 308
Period size: 75 Copynumber: 2.3 Consensus size: 75
96879640 AAAGCATAAA
* *
96879650 TTGAAAAACGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
96879715 GTTGATTTTT
66 GTTGATTTTT
*
96879725 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGA
1 TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
96879790 GTTGATTTTT
66 GTTGATTTTT
96879800 TTGAAAAGCAGAAATTGGAAAA
1 TTGAAAAGCAGAAATT-GAAAA
96879822 CAGAAATTGA
Statistics
Matches: 93, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
75 88 0.95
76 5 0.05
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (75 bp):
TTGAAAAGCAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTT
Found at i:96879827 original size:14 final size:14
Alignment explanation
Indices: 96879800--96879834 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
96879790 GTTGATTTTT
96879800 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
96879814 TTGGAAAA-CAGAAA
1 TT-GAAAAGCAGAAA
96879828 TTGAAAA
1 TTGAAAA
96879835 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 5 0.25
14 10 0.50
15 5 0.25
ACGTcount: A:0.57, C:0.06, G:0.20, T:0.17
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:96880092 original size:14 final size:14
Alignment explanation
Indices: 96880065--96880099 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
96880055 TTGATTTTTT
96880065 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
96880079 TTGGAAAA-CAGAAA
1 TT-GAAAAGCAGAAA
96880093 TTGAAAA
1 TTGAAAA
96880100 TACCTCAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 5 0.25
14 10 0.50
15 5 0.25
ACGTcount: A:0.57, C:0.06, G:0.20, T:0.17
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:96880205 original size:264 final size:264
Alignment explanation
Indices: 96879735--96882018 Score: 3752
Period size: 264 Copynumber: 8.7 Consensus size: 264
96879725 TTGAAAAGCA
96879735 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA-TTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
*
96879799 TTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
66 TTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCA
96879864 CCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAAACGGAAATTGAAAATACCT
131 CCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATT-AAAAAAACGGAAATTGAAAATACCT
96879929 CAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAGCATAAATTAA
195 CAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAGCATAAATTAA
96879994 AAACG
260 AAACG
*
96879999 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTACAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
* ** *
96880064 TTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAATACCTCAACAAGCCTTGATGCTCAACTCA
66 TTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCA
*
96880129 CCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGAAAATTGAAAATACCTC
131 CCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATTGAAAATACCTC
*
96880194 AGCGTGTCCTGAGGCTCAACTCATCTCTTGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAA
196 AGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAA
96880259 AACG
261 AACG
*
96880263 GAAATTGAAAATACATCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
*
96880328 TTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAATACCTCATCGTGCCTTGAGGCTCAACTCA
66 TTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCA
* * *
96880393 CTTATTGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATTGAAAATACCTC
131 CCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATTGAAAATACCTC
*
96880458 AGCGTATCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAA
196 AGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAA
*
96880523 AATG
261 AACG
* *
96880527 GAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATCTCTTGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
* *
96880592 TTTGAAAAGGAGAAATTGGAAAACAGAAATTGAAAATACCTCATCGTGCCTTGAGGCTCAACTCA
66 TTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCA
* *
96880657 CCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGAAAATTAAAAATACCTC
131 CCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATTGAAAATACCTC
96880722 AGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAA
196 AGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAA
*
96880787 AATG
261 AACG
*
96880791 GAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
* *
96880856 TTTGAAAAGCAGAAATTGGAAAATAGAAATTGAAAATA-CTCAGCGTGCCCTGAGGCTCAACTCA
66 TTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCA
*
96880920 CCTCTCACCTCTTGCAGTATGGGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATTGAAA
131 -C-CT---CTC--GCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATTGAAA
* *
96880985 ATACCTCAGCGTGTCCTGAGGCTCAACTCACCTATTTCAATATGAGTTGATTTTTGAAAAGCATA
189 ATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAGCATA
96881050 AATTAAAAACG
254 AATTAAAAACG
96881061 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
*
96881126 TTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAATACCTCATCGTGCCTTGAGGCTCAACTCA
66 TTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCA
96881191 CCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATTGAAAATACCTC
131 CCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATTGAAAATACCTC
* *
96881256 AGCGTGTCCTGAGACTCAACTCACCTCTTACAATATGAGTTGATTTTTGAAAAGCATAAATTAAA
196 AGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAA
96881321 AACG
261 AACG
*
96881325 GAAATGGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
*
96881390 TTTGAAAAGCAGAAATTGGAAAACAAAAATTGAAAATACCTCAGCGTGTCC-TGAGGCTCAACTC
66 TTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAATACCTCAGCGTG-CCTTGAGGCTCAACTC
96881454 ACCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATTGAAAATACCT
130 ACCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATTGAAAATACCT
96881519 CAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAGCATAAATTAA
195 CAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAGCATAAATTAA
*
96881584 AAATG
260 AAACG
*
96881589 GAAATTGAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
*
96881654 TTT-----G-A-AAA---G----CAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
66 TTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCA
*
96881705 TCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATTGAAAATACCTC
131 CCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATTGAAAATACCTC
* * *
96881770 AGCGTGTCCTGAGGCTCAACTCACCTATTGTAATATGAGTTGATTTTTTTGAAAAGCAGAAATTG
196 AGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA--TTTTTGAAAAGCATAAATT-
* *
96881835 GAAAACA
258 AAAAACG
*
96881842 GAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACCTCTCGCAGA-ATGAGT
1 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCA-C-CT---CT-T-GCA-ATATGAGT
* ** * *
96881906 TGA---TTTTTGAAAAGCATAAATTAAAAAACGGAAATTGAAAATACATCAGCGTGTCC-TGAGG
58 TGATTTTTTTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAATACCTCAGCGTG-CCTTGAGG
* *
96881967 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAA-CATAAATTGAAAA
122 CTCAACTCACCTCTCGCAGTATGAGTTGA-TTTTTGAAAAGCATAAATTAAAAA
96882019 TACCTCGGCA
Statistics
Matches: 1906, Mismatches: 76, Indels: 70
0.93 0.04 0.03
Matches are distributed among these distances:
249 2 0.00
250 143 0.08
252 18 0.01
253 42 0.02
254 2 0.00
255 2 0.00
257 8 0.00
258 3 0.00
259 2 0.00
260 12 0.01
261 1 0.00
262 1 0.00
263 25 0.01
264 1204 0.63
265 107 0.06
266 3 0.00
268 3 0.00
269 2 0.00
270 236 0.12
271 82 0.04
272 8 0.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (264 bp):
GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
TTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCA
CCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATTGAAAATACCTC
AGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAA
AACG
Found at i:96880356 original size:14 final size:14
Alignment explanation
Indices: 96880329--96880363 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
96880319 TTGATTTTTT
96880329 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
96880343 TTGGAAAA-CAGAAA
1 TT-GAAAAGCAGAAA
96880357 TTGAAAA
1 TTGAAAA
96880364 TACCTCATCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 5 0.25
14 10 0.50
15 5 0.25
ACGTcount: A:0.57, C:0.06, G:0.20, T:0.17
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:96881154 original size:14 final size:14
Alignment explanation
Indices: 96881127--96881161 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
96881117 TTGATTTTTT
96881127 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
96881141 TTGGAAAA-CAGAAA
1 TT-GAAAAGCAGAAA
96881155 TTGAAAA
1 TTGAAAA
96881162 TACCTCATCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 5 0.25
14 10 0.50
15 5 0.25
ACGTcount: A:0.57, C:0.06, G:0.20, T:0.17
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:96881268 original size:798 final size:789
Alignment explanation
Indices: 96879603--96882018 Score: 3862
Period size: 798 Copynumber: 3.1 Consensus size: 789
96879593 GTGAGCCAAT
* * *
96879603 GCTCAACTCACTTCTCGCAATATG-GATTGGTTTTTGAAAAGCATAAATT-GAAAAACGGAAATT
1 GCTCAACTCACCTCTCGCAATATGAG-TTGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATT
*
96879666 GAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
65 GAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGA--TTTTTGAAA
96879731 AGC-----------A-GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCA
128 AGCATAAATTAAAAAGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCA
96879784 ATATGAGTTGA-TTTTTTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAATACCTCAGCGTGC
193 ATATGAGTTGATTTTTTTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAATACCTCAGCGTG-
96879848 CCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAAACG
257 CCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATT-AAAAAAACG
96879913 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
321 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
*
96879978 GAAAAGCATAAATTAAAAACGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
386 GAAAAGCATAAATTAAAAATGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
* *
96880043 TTACAATATGAGTTGATTTTTTTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAATACCTCAA
451 TTGCAATATGAGTTGATTTTTTTTGAAAAGCAGAAATTGGAAAA-AGAAATTGAAAATA-CTCAG
** * *
96880108 CAAGCCTTGATGCTCAACTCAC-CTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAA
514 CGTGCCCTGAGGCTCAACTCACTCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAA
* * * *
96880172 AAACGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCATCTCTTGCAATATGAGTTGA
579 AAACGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTATTTCAATATGAGTTGA
*
96880237 TTTTTGAAAAGCATAAATTAAAAACGGAAATTGAAAATACATCAGCGTGTCCTGAGGCTCAACTC
644 TTTTTGAAAAGCATAAATTAAAAACGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTC
96880302 ACCTCTTGCAATATGAGTTGATTTTTTTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAATAC
709 ACCTCTTGCAATATGAGTTGATTTTTTTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAATAC
96880367 CTCATCGTGCCTTGAG
774 CTCATCGTGCCTTGAG
* * * *
96880383 GCTCAACTCACTTATTGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATTG
*
96880448 AAAATACCTCAGCGTATCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAGC
66 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAGC
* *
96880513 ATAAATTAAAAATGGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATCTCTTGCAAT
131 ATAAATTAAAAA-GGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAAT
* *
96880578 ATGAGTTGATTTTTTTTGAAAAGGAGAAATTGGAAAACAGAAATTGAAAATACCTCATCGTGCCT
195 ATGAGTTGATTTTTTTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAATACCTCAGCGTGCC-
*
96880643 TGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGAAA
259 TGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAA
*
96880708 ATTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAA
324 ATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAA
*
96880773 AAGCATAAATTAAAAATGGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTTG
389 AAGCATAAATTAAAAATGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTG
96880838 CAATATGAGTTGATTTTTTTTGAAAAGCAGAAATTGGAAAATAGAAATTGAAAATACTCAGCGTG
454 CAATATGAGTTGATTTTTTTTGAAAAGCAGAAATTGGAAAA-AGAAATTGAAAATACTCAGCGTG
*
96880903 CCCTGAGGCTCAACTCACCTCTCACCTCTTGCAGTATGGGTTGATTTTTGAAAAGCATAAATTAA
518 CCCTGAGGCTCAACTCA-CTCT---CTC--GCAGTATGAGTTGATTTTTGAAAAGCATAAATTAA
96880968 AAAAACGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTATTTCAATATGAGTT
577 AAAAACGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTATTTCAATATGAGTT
96881033 GATTTTTGAAAAGCATAAATTAAAAACGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAAC
642 GATTTTTGAAAAGCATAAATTAAAAACGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAAC
96881098 TCACCTCTTGCAATATGAGTTGATTTTTTTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAAT
707 TCACCTCTTGCAATATGAGTTGATTTTTTTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAAT
96881163 ACCTCATCGTGCCTTGAG
772 ACCTCATCGTGCCTTGAG
*
96881181 GCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATTG
* *
96881246 AAAATACCTCAGCGTGTCCTGAGACTCAACTCACCTCTTACAATATGAGTTGATTTTTGAAAAGC
66 AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAGC
*
96881311 ATAAATTAAAAACGGAAATGGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAAT
131 ATAAATTAAAAA-GGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAAT
*
96881376 ATGAGTTGATTTTTTTTGAAAAGCAGAAATTGGAAAACAAAAATTGAAAATACCTCAGCGTGTCC
195 ATGAGTTGATTTTTTTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAATACCTCAGCGTG-CC
96881441 TGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAA
259 TGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAA
96881506 ATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAA
324 ATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAA
*
96881571 AAGCATAAATTAAAAATGGAAATTGAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTTG
389 AAGCATAAATTAAAAATGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTG
*
96881636 CAATATGAGTTGATTTTTTTTGAAAAGCAGAAATT-G----A-AAA-T----A-CCTCAGCGTGC
454 CAATATGAGTTGATTTTTTTTGAAAAGCAGAAATTGGAAAAAGAAATTGAAAATACTCAGCGTGC
96881689 CCTGAGGCTCAACTCA-TCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACG
519 CCTGAGGCTCAACTCACTCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACG
96881753 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTATTGT-AATATGAGTTGATTTT
584 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTATT-TCAATATGAGTTGA--TT
* * * *
96881817 TTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA
646 TTTGAAAAGCATAAATT-AAAAACGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCA
* ** *
96881882 CCTCTCACCTCTCGCAGA-ATGAGTTGA---TTTTTGAAAAGCATAAATTAAAAAACGGAAATTG
710 -C-CT---CT-T-GCA-ATATGAGTTGATTTTTTTTGAAAAGCAGAAATTGGAAAACAGAAATTG
* *
96881943 AAAATACATCAGCGTGTCC-TGAG
767 AAAATACCTCATCGTG-CCTTGAG
*
96881966 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTG-AAA-CATAAATTGAAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAGCATAAATTAAAAA
96882019 TACCTCGGCA
Statistics
Matches: 1538, Mismatches: 59, Indels: 74
0.92 0.04 0.04
Matches are distributed among these distances:
778 99 0.06
779 13 0.01
780 64 0.04
781 110 0.07
782 1 0.00
783 5 0.00
784 12 0.01
785 106 0.07
786 11 0.01
787 1 0.00
788 12 0.01
789 1 0.00
790 2 0.00
791 24 0.02
792 254 0.17
793 105 0.07
796 3 0.00
797 1 0.00
798 712 0.46
799 2 0.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28
Consensus pattern (789 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATTG
AAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAGC
ATAAATTAAAAAGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATA
TGAGTTGATTTTTTTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAATACCTCAGCGTGCCTG
AGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAAAT
TGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAA
GCATAAATTAAAAATGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCA
ATATGAGTTGATTTTTTTTGAAAAGCAGAAATTGGAAAAAGAAATTGAAAATACTCAGCGTGCCC
TGAGGCTCAACTCACTCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGA
AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTATTTCAATATGAGTTGATTTTTGA
AAAGCATAAATTAAAAACGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTT
GCAATATGAGTTGATTTTTTTTGAAAAGCAGAAATTGGAAAACAGAAATTGAAAATACCTCATCG
TGCCTTGAG
Found at i:96881719 original size:76 final size:76
Alignment explanation
Indices: 96881589--96881729 Score: 237
Period size: 76 Copynumber: 1.9 Consensus size: 76
96881579 ATTAAAAATG
* * *
96881589 GAAATTGAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
96881654 TTTGAAAAGCA
66 TTTGAAAAGCA
* *
96881665 GAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCATCTCTCGCAGTATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
96881730 GAAAAGCATA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
76 60 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (76 bp):
GAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
TTTGAAAAGCA
Found at i:96881814 original size:88 final size:88
Alignment explanation
Indices: 96881665--96882018 Score: 457
Period size: 94 Copynumber: 4.0 Consensus size: 88
96881655 TTGAAAAGCA
* * *
96881665 GAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCATCTCTCGCAGTATGAGTTGA-TTTT
1 GAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTT
96881729 TGAAAAGCATAAATTAAAAAAACG
66 TGAAAAGCATAAATT-AAAAAACG
* * *
96881753 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTATTGTAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGA-TTTT
* ** *
96881818 TTGAAAAGCAGAAATTGGAAAACA
65 TTGAAAAGCATAAATTAAAAAACG
96881842 GAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACCTCTCGCAGA-ATGAGT
1 GAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA-C-CT-A----TCGCA-ATATGAGT
96881906 TGA-TTTTTGAAAAGCATAAATTAAAAAACG
58 TGATTTTTTGAAAAGCATAAATTAAAAAACG
* * *
96881936 GAAATTGAAAATACATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTT
*
96882001 TG-AAA-CATAAATTGAAAA
66 TGAAAAGCATAAATTAAAAA
96882019 TACCTCGGCA
Statistics
Matches: 233, Mismatches: 21, Indels: 26
0.83 0.08 0.09
Matches are distributed among these distances:
86 13 0.06
87 17 0.07
88 60 0.26
89 44 0.19
90 19 0.08
91 2 0.01
92 3 0.01
93 1 0.00
94 61 0.26
96 12 0.05
97 1 0.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (88 bp):
GAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTT
TGAAAAGCATAAATTAAAAAACG
Found at i:96881845 original size:14 final size:14
Alignment explanation
Indices: 96881818--96881852 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
96881808 GTTGATTTTT
96881818 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
96881832 TTGGAAAA-CAGAAA
1 TT-GAAAAGCAGAAA
96881846 TTGAAAA
1 TTGAAAA
96881853 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 5 0.25
14 10 0.50
15 5 0.25
ACGTcount: A:0.57, C:0.06, G:0.20, T:0.17
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:96881970 original size:183 final size:177
Alignment explanation
Indices: 96881657--96882005 Score: 567
Period size: 183 Copynumber: 1.9 Consensus size: 177
96881647 GATTTTTTTT
*
96881657 GAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCATCTCTCGCAGTATGAGT
1 GAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCATCTCTCGCAGAATGAGT
*
96881722 TGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTC
66 TGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATTGAAAATACATCAGCGTGTCCTGAGGCTC
* *
96881787 AACTCACCTATTGTAATATGAGTTGATTTTTTTGAAAAGCAGAAATTG
131 AACTCACCTATCGCAATATGAGTTGA-TTTTTTGAAAAGCAGAAATTG
96881835 GAAAA-CAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACCTCTCGCAG
1 GAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCA----T---CTCTCGCAG
96881899 AATGAGTTGATTTTTGAAAAGCATAAATT-AAAAAACGGAAATTGAAAATACATCAGCGTGTCCT
59 AATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATTGAAAATACATCAGCGTGTCCT
*
96881963 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA
124 GAGGCTCAACTCACCTATCGCAATATGAGTTGATTTTTTGAAA
96882006 CATAAATTGA
Statistics
Matches: 159, Mismatches: 5, Indels: 10
0.91 0.03 0.06
Matches are distributed among these distances:
177 42 0.26
178 5 0.03
181 1 0.01
182 10 0.06
183 64 0.40
184 37 0.23
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (177 bp):
GAAAAGCAGAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCATCTCTCGCAGAATGAGT
TGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATTGAAAATACATCAGCGTGTCCTGAGGCTC
AACTCACCTATCGCAATATGAGTTGATTTTTTGAAAAGCAGAAATTG
Found at i:96882060 original size:74 final size:72
Alignment explanation
Indices: 96881937--96882074 Score: 195
Period size: 74 Copynumber: 1.9 Consensus size: 72
96881927 TAAAAAACGG
* * * *
96881937 AAATTGAAAATACATCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTT
1 AAATTGAAAATACATCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAATTGATTTTTT
96882002 GAAACAT
66 GAAACAT
* * *
96882009 AAATTGAAAATACCTCGGCATGTGACCCGAGGCTCAATTCACCTCTAGCAATATGAATTGATTTT
1 AAATTGAAAATACATCAGC--GTGACCCGAGGCTCAACTCACCTCTAGCAATATGAATTGATTTT
96882074 T
64 T
96882075 GTTTGAAAAC
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
72 17 0.30
74 40 0.70
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.30
Consensus pattern (72 bp):
AAATTGAAAATACATCAGCGTGACCCGAGGCTCAACTCACCTCTAGCAATATGAATTGATTTTTT
GAAACAT
Found at i:96894659 original size:27 final size:25
Alignment explanation
Indices: 96894610--96894664 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 25
96894600 CAAATATATT
96894610 AAAAATATATACATATATCATATTAA
1 AAAAATATATACATATATCATA-TAA
*
96894636 AAAAAGTATATACATA-ATAGATATAA
1 AAAAA-TATATACATATAT-CATATAA
96894662 AAA
1 AAA
96894665 CATAATATGG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.62, C:0.05, G:0.04, T:0.29
Consensus pattern (25 bp):
AAAAATATATACATATATCATATAA
Found at i:96894663 original size:25 final size:24
Alignment explanation
Indices: 96894605--96894664 Score: 59
Period size: 27 Copynumber: 2.4 Consensus size: 24
96894595 ATACGCAAAT
*
96894605 ATATTAAAAATATATACATATATC
1 ATATAAAAAATATATACATATATC
*
96894629 ATATTAAAAAAAGTATATACATA-ATAG
1 ATA-T-AAAAAA-TATATACATATAT-C
96894656 ATATAAAAA
1 ATATAAAAA
96894665 CATAATATGG
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
24 3 0.10
25 6 0.20
26 8 0.27
27 13 0.43
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.32
Consensus pattern (24 bp):
ATATAAAAAATATATACATATATC
Found at i:96894800 original size:20 final size:20
Alignment explanation
Indices: 96894735--96894800 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
96894725 TGTACGTAAT
*
96894735 ATATAA-AAT-ATATACATG
1 ATATAAGAATAATATACATA
96894753 ATATATAGAA-AATATA-ATA
1 ATATA-AGAATAATATACATA
* *
96894772 TTTAAAAGAATAATATACATA
1 -ATATAAGAATAATATACATA
96894793 ATATAAGA
1 ATATAAGA
96894801 GTATTTAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 10
0.71 0.10 0.19
Matches are distributed among these distances:
18 5 0.14
19 7 0.19
20 22 0.59
21 3 0.08
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.32
Consensus pattern (20 bp):
ATATAAGAATAATATACATA
Found at i:96895190 original size:22 final size:22
Alignment explanation
Indices: 96895162--96895208 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
96895152 ATAATATTAG
*
96895162 AATAATAATGACAATATTTAAT
1 AATAATAATAACAATATTTAAT
*
96895184 AATAATAATAACAATTTTTAAT
1 AATAATAATAACAATATTTAAT
96895206 AAT
1 AAT
96895209 GAAACAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.38
Consensus pattern (22 bp):
AATAATAATAACAATATTTAAT
Found at i:96895205 original size:19 final size:21
Alignment explanation
Indices: 96895154--96895208 Score: 62
Period size: 22 Copynumber: 2.7 Consensus size: 21
96895144 TAACATTAAT
* *
96895154 AATA-TTAGAATAATAATGAC
1 AATATTTATAATAATAATAAC
96895174 AATATTTAATAATAATAATAAC
1 AATATTT-ATAATAATAATAAC
96895196 AAT-TTT-TAATAAT
1 AATATTTATAATAAT
96895209 GAAACAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 7 0.23
20 4 0.13
21 5 0.16
22 15 0.48
ACGTcount: A:0.55, C:0.04, G:0.04, T:0.38
Consensus pattern (21 bp):
AATATTTATAATAATAATAAC
Found at i:96897226 original size:14 final size:14
Alignment explanation
Indices: 96897199--96897233 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
96897189 GTTGATTTTT
96897199 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
96897213 TTGGAAAA-CAGAAA
1 TT-GAAAAGCAGAAA
96897227 TTGAAAA
1 TTGAAAA
96897234 TACCTCGGCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 5 0.25
14 10 0.50
15 5 0.25
ACGTcount: A:0.57, C:0.06, G:0.20, T:0.17
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:96897481 original size:14 final size:14
Alignment explanation
Indices: 96897454--96897488 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
96897444 TTGATTTTTT
96897454 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
96897468 TTGGAAAA-CAGAAA
1 TT-GAAAAGCAGAAA
96897482 TTGAAAA
1 TTGAAAA
96897489 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 5 0.25
14 10 0.50
15 5 0.25
ACGTcount: A:0.57, C:0.06, G:0.20, T:0.17
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:96897776 original size:352 final size:349
Alignment explanation
Indices: 96896989--96898078 Score: 1525
Period size: 352 Copynumber: 3.1 Consensus size: 349
96896979 GTGATCTTGA
** * * * * * *
96896989 GCTCAACTCATTTCTCGCAATATGAATTGACTCTTT-AAATACAGACATTAAAAACAGAAATTGA
1 GCTCAACTCACCTCTTGCAATATGAGTTGA-TTTTTGAAAAACATAAATTAAAAACAGAAATTGA
* * * * * * *
96897053 AAATAGCTCAGTACGTGAGCC-AATGCTCAACTCACTTCTCGCAATATGGGTTG---GTTTTTGA
65 AAATACCTCAG--CGTG-TCCTAAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTTGA
* * * *
96897114 AAAGCATAAATT-GATAAACGGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
127 AAAGCAGAAATTGGA-AAACAGAAATTGAAAATACCTCAGCGTG-CCTAAAGCTCAACTCACCTC
* * ** *
96897178 TCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATT-GGAAAACAGAAATTGAAAATACCTCGG
190 TCGCAGTATGAGTTGA--TTTTTGAAAAGCATAAATTAAAAAAACAGAAATTGAAAATACCTCAG
*
96897242 CGTGCCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAA
253 CGTGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATT---AA
* *
96897307 AAAAAAGGAAATTGAAAATGCCTCAGC--GT----
315 AAAAACGGAAATTGAAAATACCTCAGCGTGTCCAG
*
96897336 G-T---CTCACCTCTTGCAATATGAGTTGATTTTTGAAAAACATAAATTAAAAACGGAAATTGAA
1 GCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAACATAAATTAAAAACAGAAATTGAA
*
96897397 AATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTTGAAAAG
66 AATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTTGAAAAG
* *
96897462 CAGAAATTGGAAAACAGAAATTGAAAATACCTCAGCGTGCCCTAAAGCTCAATTCACATCTCGCA
131 CAGAAATTGGAAAACAGAAATTGAAAATACCTCAGCGTG-CCTAAAGCTCAACTCACCTCTCGCA
96897527 GTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACAGAAATTGAAAATACCTCAGCGTGTCC
195 GTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACAGAAATTGAAAATACCTCAGCGTGTCC
* *
96897592 TGAGGCTCAACTCACCTCTCGCAGTATGATTTGATTTTTGAAAAGCATAAATTAAAAAAACGAAA
260 TGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAA
96897657 ATTGAAAATACCTCAGCGTGTCCCAAG
325 ATTGAAAATACCTCAGCGTGT-CC-AG
*
96897684 GCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAAAACAGAAATTGAA
1 GCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAACATAAATTAAAAACAGAAATTGAA
96897749 AATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTTGAAAAG
66 AATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTTGAAAAG
*
96897814 CAGAAATTGGAAAACAGAAATTGAAAATACCTCAGCGTGCCTTAAGACTCAACTCACCTCTCGCA
131 CAGAAATTGGAAAACAGAAATTGAAAATACCTCAGCGTGCCTAAAG-CTCAACTCACCTCTCGCA
*
96897879 GTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATTGAAAATACCTCAGCGTGTCC
195 GTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACAGAAATTGAAAATACCTCAGCGTGTCC
* *
96897944 TGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAGCATAAATT--AAAAACGGAA
260 TGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAA
96898007 ATTGAAAATACCTCAGCGTGTCCTGAG
325 ATTGAAAATACCTCAGCGTGTCC--AG
*
96898034 GCTCAACTCACCTCTTGAAATATGAGTTGATTTTTTTGAAAAACA
1 GCTCAACTCACCTCTTGCAATATGAGTTGA--TTTTTGAAAAACA
96898079 GATATTGAAA
Statistics
Matches: 672, Mismatches: 48, Indels: 41
0.88 0.06 0.05
Matches are distributed among these distances:
340 28 0.04
341 31 0.05
342 24 0.04
343 136 0.20
344 76 0.11
345 2 0.00
346 1 0.00
347 1 0.00
348 1 0.00
349 3 0.00
350 61 0.09
351 6 0.01
352 302 0.45
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (349 bp):
GCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAACATAAATTAAAAACAGAAATTGAA
AATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTTGAAAAG
CAGAAATTGGAAAACAGAAATTGAAAATACCTCAGCGTGCCTAAAGCTCAACTCACCTCTCGCAG
TATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACAGAAATTGAAAATACCTCAGCGTGTCCT
GAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAAA
TTGAAAATACCTCAGCGTGTCCAG
Found at i:96897833 original size:14 final size:14
Alignment explanation
Indices: 96897806--96897840 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
96897796 TTGATTTTTT
96897806 TTGAAAAGCAGAAA
1 TTGAAAAGCAGAAA
96897820 TTGGAAAA-CAGAAA
1 TT-GAAAAGCAGAAA
96897834 TTGAAAA
1 TTGAAAA
96897841 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 5 0.25
14 10 0.50
15 5 0.25
ACGTcount: A:0.57, C:0.06, G:0.20, T:0.17
Consensus pattern (14 bp):
TTGAAAAGCAGAAA
Found at i:96898071 original size:88 final size:87
Alignment explanation
Indices: 96896989--96898068 Score: 1320
Period size: 88 Copynumber: 12.4 Consensus size: 87
96896979 GTGATCTTGA
** * * * *
96896989 GCTCAACTCATTTCTCGCAATATGAATTGACTCTTT-AAATA-CAGACATT-AAAAACAGAAATT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAA-AGCATAAATTAAAAAACAGAAATT
* * * *
96897051 GAAAATAGCTCAGTACGTGAGCC-AAT
64 GAAAATACCTCAG--CGTG-TCCTGAG
* * * * * *
96897077 GCTCAACTCACTTCTCGCAATATGGGTTGGTTTTTGAAAAGCATAAATTGATAAACGGAAATTGA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAAAAACAGAAATTGA
96897142 AAATACCTCAGCGTGTCCTGAG
66 AAATACCTCAGCGTGTCCTGAG
* **
96897164 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGGAAAACAGAAATT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAGCATAAATTAAAAAACAGAAATT
* *
96897229 GAAAATACCTCGGCGTGCCCTGAG
64 GAAAATACCTCAGCGTGTCCTGAG
* *
96897253 GCTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAAAAAAGGAAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATT---AAAAAACA-GAAA
*
96897318 TTGAAAATGCCTCAGC--G---T---
62 TTGAAAATACCTCAGCGTGTCCTGAG
* * *
96897336 G-T---CTCACCTCTTGCAATATGAGTTGATTTTTGAAAAACATAAATT-AAAAACGGAAATTGA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAAAAACAGAAATTGA
96897396 AAATACCTCAGCGTGTCCTGAG
66 AAATACCTCAGCGTGTCCTGAG
* * **
96897418 GCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTTGAAAAGCAGAAATTGGAAAACAGAAAT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGAAAAGCATAAATTAAAAAACAGAAAT
* * *
96897483 TGAAAATACCTCAGCGTGCCCTAAA
63 TGAAAATACCTCAGCGTGTCCTGAG
* * *
96897508 GCTCAATTCACATCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACAGAAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATT-AAAAAACAGAAATTG
96897573 AAAATACCTCAGCGTGTCCTGAG
65 AAAATACCTCAGCGTGTCCTGAG
* *
96897596 GCTCAACTCACCTCTCGCAGTATGATTTGATTTTTGAAAAGCATAAATTAAAAAA-ACGAAAATT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAAAAACA-G-AAATT
**
96897660 GAAAATACCTCAGCGTGTCCCAAG
64 GAAAATACCTCAGCGTGTCCTGAG
*
96897684 GCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAGCATAAATT-AAAAACAGAAATTGA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAAAAACAGAAATTGA
*
96897748 AAATACCTCAGCGTGTCCTAAG
66 AAATACCTCAGCGTGTCCTGAG
* * **
96897770 GCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTTGAAAAGCAGAAATTGGAAAACAGAAAT
1 GCTCAACTCACCTCTCGCAATATGAGTTGA---TTTTTGAAAAGCATAAATTAAAAAACAGAAAT
*
96897835 TGAAAATACCTCAGCGTG-CCTTAAG
63 TGAAAATACCTCAGCGTGTCC-TGAG
* * *
96897860 ACTCAACTCACCTCTCGCAGTATGAGTTGATTTTTGAAAAGCATAAATTAAAAAAACGGAAATTG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATT-AAAAAACAGAAATTG
96897925 AAAATACCTCAGCGTGTCCTGAG
65 AAAATACCTCAGCGTGTCCTGAG
* *
96897948 GCTCAACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAGCATAAATT-AAAAACGGAAATTGA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAAAAACAGAAATTGA
96898012 AAATACCTCAGCGTGTCCTGAG
66 AAATACCTCAGCGTGTCCTGAG
* *
96898034 GCTCAACTCACCTCTTGAAATATGAGTTGATTTTT
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
96898069 TTGAAAAACA
Statistics
Matches: 880, Mismatches: 75, Indels: 76
0.85 0.07 0.07
Matches are distributed among these distances:
74 19 0.02
75 5 0.01
76 1 0.00
79 41 0.05
82 2 0.00
83 2 0.00
86 157 0.18
87 104 0.12
88 265 0.30
89 143 0.16
90 123 0.14
91 18 0.02
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.28
Consensus pattern (87 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGCATAAATTAAAAAACAGAAATTGA
AAATACCTCAGCGTGTCCTGAG
Found at i:96899350 original size:131 final size:131
Alignment explanation
Indices: 96899126--96899606 Score: 416
Period size: 132 Copynumber: 3.7 Consensus size: 131
96899116 CATTCGATTA
* *
96899126 TTTT-GAACAAACTG-AAAATTGCAACCCAGCACGATAGGGCACTATTCCCCGAATCGCCAAACA
1 TTTTAGAACAAA-TGAAAAATCGCAACCCAGCACGATAGGGCACGATT-CCCGAATCGCCAAACA
* * * *
96899189 TCGAACATTTCTTTCGTTTTAAATGGTTTTTAGAAAACGTGAATGAAATTCTGAAGGGATCTTCG
64 TCGAACATTGCCTTCGTTTTAAA-GGTTTTTAGAAAACATGAGTGAAATTCTGAAGGGATCTTCG
96899254 ATCG
128 ATCG
* * * *
96899258 -TTTAGAATAAATGAAAAATCGCAACCCAGCACGATAGGGCACGATTCTCAAATCGCCAAACATA
1 TTTTAGAACAAATGAAAAATCGCAACCCAGCACGATAGGGCACGATTCCCGAATCGCCAAACATC
* * ** * * * *
96899322 GAACATCGCCTTCGTTTTGAAAGGTTTTTA-ATAAATATGAGTGAAAACCTAAAAGAATATTCGA
66 GAACATTGCCTTCGTTTT-AAAGGTTTTTAGA-AAACATGAGTGAAATTCTGAAGGGATCTTCGA
*
96899386 TTG
129 TCG
* * * * * * * *
96899389 TTTTTGAACAAATGAGAAATCACGACCCAGCACGATAGGGCATGATTCCCGAATTGTCAAACACC
1 TTTTAGAACAAATGAAAAATCGCAACCCAGCACGATAGGGCACGATTCCCGAATCGCCAAACATC
** * * *
96899454 GAGTATTGCCTTCGTTTTAAAGGATTTTTGGAAGACATGAGTGAAATTTTGAAGGGA-CTTTCGA
66 GAACATTGCCTTCGTTTTAAAGG-TTTTTAGAAAACATGAGTGAAATTCTGAAGGGATC-TTCGA
**
96899518 TTA
129 TCG
* * * * * * * * * * *
96899521 CTTT-GAGCAAACGAGAAATTGAAACCCAACACGTTAGGGCACGATTCCACGAATTGTCAAATAT
1 TTTTAGAACAAATGAAAAATCGCAACCCAGCACGATAGGGCACGATTCC-CGAATCGCCAAACAT
* * *
96899585 CGAATATCGCATTCGTTTTAAA
65 CGAACATTGCCTTCGTTTTAAA
96899607 TAATTGTGAA
Statistics
Matches: 280, Mismatches: 60, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
130 1 0.00
131 108 0.39
132 170 0.61
133 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.28
Consensus pattern (131 bp):
TTTTAGAACAAATGAAAAATCGCAACCCAGCACGATAGGGCACGATTCCCGAATCGCCAAACATC
GAACATTGCCTTCGTTTTAAAGGTTTTTAGAAAACATGAGTGAAATTCTGAAGGGATCTTCGATC
G
Found at i:96903938 original size:6 final size:7
Alignment explanation
Indices: 96903896--96903938 Score: 59
Period size: 7 Copynumber: 5.7 Consensus size: 7
96903886 CGATATGATT
96903896 ATTTTTA
1 ATTTTTA
96903903 ATTTTTA
1 ATTTTTA
96903910 TATTTTTCA
1 -ATTTTT-A
96903919 GATTTTTA
1 -ATTTTTA
96903927 ATTTTTA
1 ATTTTTA
96903934 ATTTT
1 ATTTT
96903939 GACTTAAACG
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
7 19 0.58
8 7 0.21
9 7 0.21
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (7 bp):
ATTTTTA
Found at i:96909246 original size:3 final size:3
Alignment explanation
Indices: 96909238--96909288 Score: 102
Period size: 3 Copynumber: 17.0 Consensus size: 3
96909228 TAAATCAGTT
96909238 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
96909286 TAA
1 TAA
96909289 CGACATGAGT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:96909530 original size:15 final size:14
Alignment explanation
Indices: 96909514--96909545 Score: 50
Period size: 12 Copynumber: 2.4 Consensus size: 14
96909504 TAGAGAAATA
96909514 AATGAATAAACAAT
1 AATGAATAAACAAT
96909528 AA--AATAAACAAT
1 AATGAATAAACAAT
96909540 AATGAA
1 AATGAA
96909546 AGTAATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 4
0.80 0.00 0.20
Matches are distributed among these distances:
12 12 0.75
14 4 0.25
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.19
Consensus pattern (14 bp):
AATGAATAAACAAT
Found at i:96910970 original size:23 final size:22
Alignment explanation
Indices: 96910941--96910983 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
96910931 ATATATATGC
96910941 ATATACA-TACATATATAATAAAA
1 ATATACACTA-ATAT-TAATAAAA
96910964 ATATACACTAATATTAATAA
1 ATATACACTAATATTAATAA
96910984 TAATGATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.32
23 11 0.58
24 2 0.11
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.33
Consensus pattern (22 bp):
ATATACACTAATATTAATAAAA
Found at i:96911097 original size:143 final size:136
Alignment explanation
Indices: 96910880--96911311 Score: 596
Period size: 143 Copynumber: 3.1 Consensus size: 136
96910870 AAGCAAATAT
* * * *
96910880 AATATGATAAATAATATTAAAATAAGGTAATTAAAATAATACTATATATAAATATATATGCATAT
1 AATATAATAAA-AATATTAAAATAAAGTAATAAAAATAATACTATATATAAATATATATACATAT
*
96910945 ACATACATATATAATAAAAA-TATACACTAATATTAATAATAATGATAATAGTAATAATATTGAA
65 AC--GC-TATATAATAAAAAGTATACACTAATATTAATAATAAT-ATAATA-TAATAATATTGAA
96911009 ATACAAAAAGCA
125 ATACAAAAAGCA
*
96911021 AATATAATAAAAATATTAAAATAAAGTAATAAAAATAATAATATTATATATATAAATATATATAC
1 AATATAATAAAAATATTAAAATAAAGTAAT--AAA-AATAATA--CTATATATAAATATATATAC
*
96911086 ATATACGC-ATATAATAAAAAGTATACACTACTATATAATAATAATAATAATAATAATAATATTG
61 ATATACGCTATATAATAAAAAGTATACACTAATAT-TAATAATAAT-ATAAT-ATAATAATATTG
*
96911150 AAATACAAAAAGTA
123 AAATACAAAAAGCA
96911164 AATATAATAAAAATATTAAAATAAAGTAATAAAAATAATACTATATATAAATATATATACATATA
1 AATATAATAAAAATATTAAAATAAAGTAATAAAAATAATACTATATATAAATATATATACATATA
96911229 CG-TATATAATAAAAAGTATACACT-ATA-TAATAAT-A-AT-A-ATAATAATATTGAAATAC-A
66 CGCTATATAATAAAAAGTATACACTAATATTAATAATAATATAATATAATAATATTGAAATACAA
96911286 AAAGCA
131 AAAGCA
96911292 AATATAATAAAAATATTAAA
1 AATATAATAAAAATATTAAA
96911312 TATATATACA
Statistics
Matches: 270, Mismatches: 12, Indels: 31
0.86 0.04 0.10
Matches are distributed among these distances:
128 26 0.10
129 18 0.07
131 1 0.00
132 2 0.01
134 1 0.00
135 7 0.03
137 2 0.01
138 47 0.17
140 25 0.09
141 25 0.09
142 14 0.05
143 77 0.29
144 1 0.00
145 24 0.09
ACGTcount: A:0.59, C:0.05, G:0.04, T:0.31
Consensus pattern (136 bp):
AATATAATAAAAATATTAAAATAAAGTAATAAAAATAATACTATATATAAATATATATACATATA
CGCTATATAATAAAAAGTATACACTAATATTAATAATAATATAATATAATAATATTGAAATACAA
AAAGCA
Found at i:96911126 original size:3 final size:3
Alignment explanation
Indices: 96911120--96911146 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
96911110 ACACTACTAT
96911120 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
96911147 TTGAAATACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:96911133 original size:140 final size:139
Alignment explanation
Indices: 96910828--96911311 Score: 582
Period size: 143 Copynumber: 3.5 Consensus size: 139
96910818 AATAATGATG
* * * *
96910828 ATAATGATAATAATACTAGCAATAATAATGAAATACAAAAAAAAGCAAATATAATATGATAAATA
1 ATAATAATAATAATAATAGTAATAATATTGAAATAC---AAAAAGC-AA-AT-ATA--ATAAA-A
* * * * *
96910893 ATATTAAAATAAGGTAATTAAAATAATACTATATATAAATATATATGCATATAC--ATACATATA
57 ATATTAAAATAAAGTAA-TAAAATAATAATATATATATATAAATAT--ATATACATATACGTATA
*
96910956 TAATAAAAA-TATACACTAAT
119 TAATAAAAAGTATACACTACT
*
96910976 ATTAATAATAATGATAATAGTAATAATATTGAAATACAAAAAGCAAATATAATAAAAATATTAAA
1 A-TAATAATAATAATAATAGTAATAATATTGAAATACAAAAAGCAAATATAATAAAAATATTAAA
*
96911041 ATAAAGTAATAAAAATAATAATATTATATATATAAATATATATACATATACGCATATAATAAAAA
65 ATAAAGTAAT-AAAATAATAATA-TATATATATAAATATATATACATATACGTATATAATAAAAA
96911106 GTATACACTACTAT
128 GTATACACTAC--T
* *
96911120 ATAATAATAATAATAATAATAATAATATTGAAATACAAAAAGTAAATATAATAAAAATATTAAAA
1 ATAATAATAATAATAATAGTAATAATATTGAAATACAAAAAGCAAATATAATAAAAATATTAAAA
*
96911185 TAAAGTAAT-AAA-AATAATA-CTATATATAAATATATATACATATACGTATATAATAAAAAGTA
66 TAAAGTAATAAAATAATAATATATATATATAAATATATATACATATACGTATATAATAAAAAGTA
96911247 T--AC-ACT
131 TACACTACT
96911253 AT-ATAATAATAAT-A-A-TAATAATATTGAAATAC-AAAAGCAAATATAATAAAAATATTAAA
1 ATAATAATAATAATAATAGTAATAATATTGAAATACAAAAAGCAAATATAATAAAAATATTAAA
96911312 TATATATACA
Statistics
Matches: 310, Mismatches: 18, Indels: 36
0.85 0.05 0.10
Matches are distributed among these distances:
128 26 0.08
129 17 0.05
130 1 0.00
131 1 0.00
132 11 0.04
133 3 0.01
135 2 0.01
136 2 0.01
138 42 0.14
139 7 0.02
140 35 0.11
141 37 0.12
142 9 0.03
143 73 0.24
144 4 0.01
145 2 0.01
146 7 0.02
148 1 0.00
149 30 0.10
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (139 bp):
ATAATAATAATAATAATAGTAATAATATTGAAATACAAAAAGCAAATATAATAAAAATATTAAAA
TAAAGTAATAAAATAATAATATATATATATAAATATATATACATATACGTATATAATAAAAAGTA
TACACTACT
Found at i:96911283 original size:97 final size:97
Alignment explanation
Indices: 96911167--96911372 Score: 285
Period size: 97 Copynumber: 2.1 Consensus size: 97
96911157 AAAAGTAAAT
* **
96911167 ATAATAAAAATATTAAAATA-AAGTAA-TAAAAATAAT-ACTATATATAAATATATATACATATA
1 ATAATAAAAATATTAAAATACAA--AAGCAAAAATAATAAAAATAT-TAAATATATATACATATA
96911229 CGTATATAATAAAAAGTATACACTA-TATAATAATA
63 CGTATATAATAAAAAGTATACACTACTAT-ATAATA
* * *
96911264 ATAATAATAATATTGAAATACAAAAGCAAATATAATAAAAATATTAAATATATATACATATACGT
1 ATAATAAAAATATTAAAATACAAAAGCAAAAATAATAAAAATATTAAATATATATACATATACGT
96911329 ATATAATAAAAAGTATACACTACTATATAATA
66 ATATAATAAAAAGTATACACTACTATATAATA
*
96911361 ATAATAACAATA
1 ATAATAAAAATA
96911373 ATAATAAAAG
Statistics
Matches: 98, Mismatches: 7, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
96 2 0.02
97 86 0.88
98 10 0.10
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.31
Consensus pattern (97 bp):
ATAATAAAAATATTAAAATACAAAAGCAAAAATAATAAAAATATTAAATATATATACATATACGT
ATATAATAAAAAGTATACACTACTATATAATA
Found at i:96911395 original size:100 final size:98
Alignment explanation
Indices: 96911206--96911406 Score: 291
Period size: 100 Copynumber: 2.0 Consensus size: 98
96911196 AAATAATACT
*
96911206 ATATATAAATATATATACATATACGTATATAATAAAAAGTATACACTATATAATAATAATAATAA
1 ATATATAAATATATATACATATACGTATATAATAAAAAGTATACACTATATAATAATAATAACAA
* * *
96911271 TAATATTGAAATACAAAAGCAAATATAATAAA-A
66 TAATAATAAAATACAAAAACAAATA-AATAAATA
96911304 ATAT-TAAATATATATACATATACGTATATAATAAAAAGTATACACTACTATATAATAATAATAA
1 ATATATAAATATATATACATATACGTATATAATAAAAAGTAT--AC-ACTATATAATAATAATAA
*
96911368 CAATAATAATAAAAGT-CAAAAATAAATAAATAAATA
63 CAATAATAATAAAA-TACAAAAACAAATAAATAAATA
96911404 ATA
1 ATA
96911407 GAACAGCAAA
Statistics
Matches: 93, Mismatches: 5, Indels: 8
0.88 0.05 0.08
Matches are distributed among these distances:
97 37 0.40
98 4 0.04
99 8 0.09
100 43 0.46
101 1 0.01
ACGTcount: A:0.60, C:0.06, G:0.03, T:0.30
Consensus pattern (98 bp):
ATATATAAATATATATACATATACGTATATAATAAAAAGTATACACTATATAATAATAATAACAA
TAATAATAAAATACAAAAACAAATAAATAAATA
Found at i:96911403 original size:97 final size:96
Alignment explanation
Indices: 96911206--96911397 Score: 284
Period size: 97 Copynumber: 2.0 Consensus size: 96
96911196 AAATAATACT
96911206 ATATATAAATATATATACATATACGTATATAATAAAAAGTATACACTATATAATAATAATAATAA
1 ATATATAAATATATATACATATACGTATATAATAAAAAGTATACACTATATAATAATAATAATAA
* * *
96911271 TAATATTGAAATACAAAAGCAAATATAATAAAA
66 CAATAAT-AAATA-AAAAGCAAAAATAATAAAA
96911304 ATAT-TAAATATATATACATATACGTATATAATAAAAAGTATACACTACTAT-ATAATAATAATA
1 ATATATAAATATATATACATATACGTATATAATAAAAAGTATACACTA-TATAATAATAATAATA
96911367 ACAATAAT-AAT-AAAAGTCAAAAATAAATAAA
65 ACAATAATAAATAAAAAG-CAAAAAT-AATAAA
96911398 TAAATAATAG
Statistics
Matches: 88, Mismatches: 3, Indels: 9
0.88 0.03 0.09
Matches are distributed among these distances:
93 5 0.06
94 6 0.07
95 9 0.10
97 61 0.69
98 7 0.08
ACGTcount: A:0.59, C:0.07, G:0.04, T:0.30
Consensus pattern (96 bp):
ATATATAAATATATATACATATACGTATATAATAAAAAGTATACACTATATAATAATAATAATAA
CAATAATAAATAAAAAGCAAAAATAATAAAA
Found at i:96913240 original size:75 final size:75
Alignment explanation
Indices: 96913106--96913303 Score: 238
Period size: 75 Copynumber: 2.7 Consensus size: 75
96913096 AGAAACTAAA
* * * * *
96913106 AGGCTTAACTCACTTCTCGCACTATGAGTCGA-TTTTTGGCGAATAGAAACTAAAAATACCTCAG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTG-AAATAGAAACTAAAAATACCTCAG
*
96913170 CTTGTGACCCG
65 CGTGTGACCCG
* * * * * *
96913181 AGGCTCAACTCACTTCTCGTAATATGAGTTGATTTTTTTGAAATATAAATTGAAGATACCTTAGC
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAATAGAAACTAAAAATACCTCAGC
96913246 GTGTGACCCG
66 GTGTGACCCG
* * *
96913256 AGGGTCAACTCACCTCTCGCAATATGAGTTGATTTTCTTGAAA-AGAAA
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAATAGAAA
96913304 AAATTAAAAA
Statistics
Matches: 105, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
74 4 0.04
75 95 0.90
76 6 0.06
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (75 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTTTGAAATAGAAACTAAAAATACCTCAGC
GTGTGACCCG
Found at i:96913382 original size:91 final size:91
Alignment explanation
Indices: 96913227--96913404 Score: 268
Period size: 91 Copynumber: 2.0 Consensus size: 91
96913217 TTTGAAATAT
* * *
96913227 AAATTGAAGATACCTTAGCGTGTGACCCGAGGGTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTTAGCATGTGACCCGAGGGTCAACTCACCTCTCACAATATGAGTTGATTTT
96913292 CTTGAAAAGA-AAAAATTAAAAAACAA
66 CTTGAAAA-ACAAAAATTAAAAAACAA
* * *
96913318 AAATTGAAAATATCTTGGCATGTGGCCCGAGGGTCAACTCACCTCTCACAATATGAGTTGATTTT
1 AAATTGAAAATACCTTAGCATGTGACCCGAGGGTCAACTCACCTCTCACAATATGAGTTGATTTT
* *
96913383 TTTGAAAAACAAAAATTGAAAA
66 CTTGAAAAACAAAAATTAAAAA
96913405 TACCTCGGCG
Statistics
Matches: 78, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
90 1 0.01
91 77 0.99
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (91 bp):
AAATTGAAAATACCTTAGCATGTGACCCGAGGGTCAACTCACCTCTCACAATATGAGTTGATTTT
CTTGAAAAACAAAAATTAAAAAACAA
Found at i:96913437 original size:77 final size:77
Alignment explanation
Indices: 96913310--96913468 Score: 228
Period size: 77 Copynumber: 2.1 Consensus size: 77
96913300 GAAAAAATTA
* * ** * *
96913310 AAAAACAAAAATTGAAAATATCTTGGCATGTGGCCCGAGGGTCAACTCACCTCTCACAATATGAG
1 AAAAACAAAAATTGAAAATACCTCGGCACCTGACCCGAGGCTCAACTCACCTCTCACAATATGAG
*
96913375 TTGATTTTTTTG
66 TTGATTTTTTCG
* * *
96913387 AAAAACAAAAATTGAAAATACCTCGGCGCCTGATCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAAAAATTGAAAATACCTCGGCACCTGACCCGAGGCTCAACTCACCTCTCACAATATGAG
96913452 TTGATTTTTTCG
66 TTGATTTTTTCG
96913464 AAAAA
1 AAAAA
96913469 TAGAAATAAA
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
77 72 1.00
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (77 bp):
AAAAACAAAAATTGAAAATACCTCGGCACCTGACCCGAGGCTCAACTCACCTCTCACAATATGAG
TTGATTTTTTCG
Found at i:96925458 original size:41 final size:41
Alignment explanation
Indices: 96925413--96925568 Score: 235
Period size: 41 Copynumber: 3.8 Consensus size: 41
96925403 ACCGGCTCTT
*
96925413 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
96925454 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
96925495 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
96925536 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
96925569 TAACGATAAA
Statistics
Matches: 107, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
39 2 0.02
40 2 0.02
41 98 0.92
42 2 0.02
43 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:96926075 original size:21 final size:23
Alignment explanation
Indices: 96926051--96926098 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
96926041 AATATATATA
96926051 TATTTC-AC-TCATACTTTTAAT
1 TATTTCAACATCATACTTTTAAT
*
96926072 TATTTCAACTATCATATTTTTAAT
1 TATTTCAAC-ATCATACTTTTAAT
96926096 TAT
1 TAT
96926099 ATTTCATCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 6 0.26
22 2 0.09
24 15 0.65
ACGTcount: A:0.31, C:0.15, G:0.00, T:0.54
Consensus pattern (23 bp):
TATTTCAACATCATACTTTTAAT
Found at i:96927230 original size:24 final size:24
Alignment explanation
Indices: 96927201--96927254 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
96927191 TTGTTACAAT
*
96927201 AAATCCGCACACTTAGTGCTATAC
1 AAATCCGCACACATAGTGCTATAC
96927225 AAATCCGCACACATAGTGCTATAC
1 AAATCCGCACACATAGTGCTATAC
96927249 AAATCC
1 AAATCC
96927255 AGGTCATTTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.37, C:0.30, G:0.11, T:0.22
Consensus pattern (24 bp):
AAATCCGCACACATAGTGCTATAC
Found at i:96934576 original size:49 final size:49
Alignment explanation
Indices: 96934519--96934631 Score: 135
Period size: 49 Copynumber: 2.3 Consensus size: 49
96934509 CCATGTTAAC
* *
96934519 CCGCACACATAGTGCCT-TA-ATAATCCATACACATA-TCGACGATTCAAAT
1 CCGCACACATAGTGCCTGTATA-AATCCACACACATAGT-G-CGATACAAAT
* *
96934568 CCGCACACATAGTG-CTGTATAAATCCGCACACATAGTGCTATACAAAT
1 CCGCACACATAGTGCCTGTATAAATCCACACACATAGTGCGATACAAAT
96934616 CCGCACACATAGTGCC
1 CCGCACACATAGTGCC
96934632 ATTCAAATCT
Statistics
Matches: 56, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
48 24 0.43
49 30 0.54
50 2 0.04
ACGTcount: A:0.35, C:0.30, G:0.13, T:0.22
Consensus pattern (49 bp):
CCGCACACATAGTGCCTGTATAAATCCACACACATAGTGCGATACAAAT
Found at i:96934624 original size:73 final size:72
Alignment explanation
Indices: 96934519--96934654 Score: 179
Period size: 73 Copynumber: 1.9 Consensus size: 72
96934509 CCATGTTAAC
* *
96934519 CCGCACACATAGTGCCTTAATAATCCATACACATA-TCGACGATTCAAATCCGCACACATAGTGC
1 CCGCACACATAGTGCCTTAATAATCCACACACATAGT-G-CCATTCAAATCCGCACACATAGTGC
96934583 TGTATAAAT
64 TGTATAAAT
* *
96934592 CCGCACACATAGTG-CTATACA-AATCCGCACACATAGTGCCATTCAAATCTGCACACATAGTGC
1 CCGCACACATAGTGCCT-TA-ATAATCCACACACATAGTGCCATTCAAATCCGCACACATAGTGC
96934655 CAAGGTCATT
Statistics
Matches: 56, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
72 25 0.45
73 29 0.52
74 2 0.04
ACGTcount: A:0.35, C:0.29, G:0.13, T:0.23
Consensus pattern (72 bp):
CCGCACACATAGTGCCTTAATAATCCACACACATAGTGCCATTCAAATCCGCACACATAGTGCTG
TATAAAT
Found at i:96934655 original size:24 final size:24
Alignment explanation
Indices: 96934497--96934656 Score: 139
Period size: 24 Copynumber: 6.6 Consensus size: 24
96934487 AAGGAAATTT
* * *
96934497 GCACCCATAGTGCCATGT-TAACCC
1 GCACACATAGTGCCAT-TCAAATCC
*
96934521 GCACACATAGTGCC-TTAATAATCC
1 GCACACATAGTGCCATTCA-AATCC
** *
96934545 ATACACATA-TCGACGATTCAAATCC
1 GCACACATAGT-G-CCATTCAAATCC
**
96934570 GCACACATAGTGCTGTAT-AAATCC
1 GCACACATAGTGCCAT-TCAAATCC
* *
96934594 GCACACATAGTGCTATACAAATCC
1 GCACACATAGTGCCATTCAAATCC
*
96934618 GCACACATAGTGCCATTCAAATCT
1 GCACACATAGTGCCATTCAAATCC
96934642 GCACACATAGTGCCA
1 GCACACATAGTGCCA
96934657 AGGTCATTTC
Statistics
Matches: 112, Mismatches: 16, Indels: 16
0.78 0.11 0.11
Matches are distributed among these distances:
22 1 0.01
23 2 0.02
24 90 0.80
25 15 0.13
26 4 0.04
ACGTcount: A:0.34, C:0.30, G:0.14, T:0.23
Consensus pattern (24 bp):
GCACACATAGTGCCATTCAAATCC
Found at i:96938236 original size:21 final size:22
Alignment explanation
Indices: 96938190--96938239 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
96938180 ATATCAAAAT
*
96938190 ATAATATTAGCACAAAAATAACA
1 ATAATATTA-CACAAAAAGAACA
96938213 ATAATATT-CACAATAAAGAA-A
1 ATAATATTACACAA-AAAGAACA
96938234 ATAATA
1 ATAATA
96938240 ATAATAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
21 12 0.48
22 5 0.20
23 8 0.32
ACGTcount: A:0.62, C:0.10, G:0.04, T:0.24
Consensus pattern (22 bp):
ATAATATTACACAAAAAGAACA
Found at i:96938516 original size:128 final size:131
Alignment explanation
Indices: 96938378--96938925 Score: 575
Period size: 131 Copynumber: 4.1 Consensus size: 131
96938368 TAATACTAGC
* *
96938378 AATAATAATGAAATACAAAA-AAAGCAAATATAATATAATAAATAATATTAAAATAAGGTAAT-T
1 AATAATAATGAAATACAAAACAAAG-AAATA-AATATAATAAA-AATATTAAAATAAAGTAATAA
* *
96938441 AAAATAATACTATATAT-ATACATATAC-ATACATATATAATAAAAA-TATACACTAATATTAAT
63 AAAATAATACTATATATAATATATATACAATACATATATAATAAAAAGTATACACTACTA-T-AT
96938503 AATAAT
126 AATAAT
* * * * *
96938509 AATAATGATGATAATAGTAATAATATTGAAATATAAAAAGCAAATATAATAAAAATATTAAAATA
1 AATAATAATG--AA-A-T-ACAA-A---ACA-A-AGAAA-TAAATATAATAAAAATATTAAAATA
**
96938574 AAGTAATAAAAAAATAATACTATCTATATAAATATATATACATATACGCATATAATAAAAAGTAT
54 AAGTAAT-AAAAAATAATACTA--TATAT-AATATATATACA-ATACATATATAATAAAAAGTAT
96938639 ACACTACTATATAATAAT
114 ACACTACTATATAATAAT
** **
96938657 AATAATAAT-AATATTGAAATACAAA-AAGCAAATATAATAAAAATATTAAAATAAAGTAATAAA
1 AATAATAATGAA-ATACAAA-ACAAAGAAATAAATATAATAAAAATATTAAAATAAAGTAATAAA
96938720 AAATAATACTATATATAA-ATATATACATATACATATATAATAAAAAGTATACACTACTATATAA
64 AAATAATACTATATATAATATATATACA-ATACATATATAATAAAAAGTATACACTACTATATAA
96938784 TAAT
128 TAAT
96938788 AATAATAGTATTGAAATAC--AA-AAAG--A-AAATATAATAAAAATATTAAAATAAAGTAATAA
1 AATAATA--A-TGAAATACAAAACAAAGAAATAAATATAATAAAAATATTAAAATAAAGTAATAA
* *
96938847 AAAATAATACTATATATAAATATATATACATATACGTATATAATAAAAAGTATGCACTACTATAT
63 AAAATAATACTATATAT-AATATATATACA-ATACATATATAATAAAAAGTATACACTACTATAT
96938912 AATAAT
126 AATAAT
96938918 AATAATAA
1 AATAATAA
96938926 CAATAATAGT
Statistics
Matches: 365, Mismatches: 23, Indels: 61
0.81 0.05 0.14
Matches are distributed among these distances:
128 51 0.14
129 2 0.01
130 58 0.16
131 65 0.18
132 3 0.01
133 8 0.02
134 4 0.01
135 17 0.05
136 35 0.10
137 3 0.01
138 1 0.00
139 1 0.00
140 3 0.01
141 19 0.05
142 16 0.04
143 16 0.04
144 1 0.00
145 9 0.02
147 9 0.02
148 16 0.04
149 17 0.05
150 11 0.03
ACGTcount: A:0.60, C:0.06, G:0.04, T:0.30
Consensus pattern (131 bp):
AATAATAATGAAATACAAAACAAAGAAATAAATATAATAAAAATATTAAAATAAAGTAATAAAAA
ATAATACTATATATAATATATATACAATACATATATAATAAAAAGTATACACTACTATATAATAA
T
Found at i:96938547 original size:149 final size:149
Alignment explanation
Indices: 96938346--96938665 Score: 359
Period size: 149 Copynumber: 2.1 Consensus size: 149
96938336 TATATGTATG
* *
96938346 TTAATAATGATGATAATGATAATAATACTAGCAATAATAATGAAATACAAAAAAAGCAAATATAA
1 TTAATAATAATAATAATGATAATAATACTAGCAATAATAATGAAATAC--AAAAAGC----A-AA
* *
96938411 TATAATAAATAATATTAAAATAAGGTAAT-TAAAATAATACTA-TATAT-ATACATATAC-ATAC
59 TATAATAAA-AATATTAAAATAAAGTAATAAAAAATAATACTACTATATAATACATATACAATAC
*
96938472 ATATATAATAAAAA-TATACACTAATA
123 ACATATAATAAAAAGTATACACTAATA
* * * *
96938498 TTAATAATAATAATAATGATGAT-A-A-TAGTAATAATATTGAAATATAAAAAGCAAATATAATA
1 TTAATAATAATAATAATGATAATAATACTAGCAATAATAATGAAATACAAAAAGCAAATATAATA
* *
96938560 AAAATATTAAAATAAAGTAATAAAAAAATAATACTATCTATATAAATATATATACATATACGCAT
66 AAAATATTAAAATAAAGTAAT-AAAAAATAATACTA-CTATAT-AATACATATACA-ATACACAT
*
96938625 ATAATAAAAAGTATACACTACTA
127 ATAATAAAAAGTATACACTAATA
96938648 TATAATAATAATAATAAT
1 T-TAATAATAATAATAAT
96938666 AATATTGAAA
Statistics
Matches: 146, Mismatches: 12, Indels: 21
0.82 0.07 0.12
Matches are distributed among these distances:
141 18 0.12
142 11 0.08
143 13 0.09
145 5 0.03
147 16 0.11
149 33 0.23
150 13 0.09
151 17 0.12
152 20 0.14
ACGTcount: A:0.58, C:0.06, G:0.05, T:0.31
Consensus pattern (149 bp):
TTAATAATAATAATAATGATAATAATACTAGCAATAATAATGAAATACAAAAAGCAAATATAATA
AAAATATTAAAATAAAGTAATAAAAAATAATACTACTATATAATACATATACAATACACATATAA
TAAAAAGTATACACTAATA
Found at i:96938689 original size:136 final size:133
Alignment explanation
Indices: 96938519--96938930 Score: 690
Period size: 128 Copynumber: 3.1 Consensus size: 133
96938509 AATAATGATG
* *
96938519 ATAATAGTAATAATATTGAAATATAAAAAGCAAATATAATAAAAATATTAAAATAAAGTAATAAA
1 ATAATAATAATAATATTGAAATACAAAAAGCAAATATAATAAAAATATTAAAATAAAGTAAT-AA
*
96938584 AAAATAATACTATCTATATAAATATATATACATATACGCATATAATAAAAAGTATACACTACTAT
65 AAAATAATACTA--TATATAAATATATATACATATACGTATATAATAAAAAGTATACACTACTAT
96938649 ATAATA
128 ATAATA
96938655 ATAATAATAATAATATTGAAATACAAAAAGCAAATATAATAAAAATATTAAAATAAAGTAATAAA
1 ATAATAATAATAATATTGAAATACAAAAAGCAAATATAATAAAAATATTAAAATAAAGTAATAAA
*
96938720 AAATAATACTATATAT-AA-ATATATACATATACATATATAATAAAAAGTATACACTAC--TAT-
66 AAATAATACTATATATAAATATATATACATATACGTATATAATAAAAAGTATACACTACTATATA
96938780 ATA
131 ATA
* *
96938783 ATAATAATAATAGTATTGAAATACAAAAAGAAAATATAATAAAAATATTAAAATAAAGTAATAAA
1 ATAATAATAATAATATTGAAATACAAAAAGCAAATATAATAAAAATATTAAAATAAAGTAATAAA
*
96938848 AAATAATACTATATATAAATATATATACATATACGTATATAATAAAAAGTATGCACTACTATATA
66 AAATAATACTATATATAAATATATATACATATACGTATATAATAAAAAGTATACACTACTATATA
96938913 ATA
131 ATA
*
96938916 ATAATAATAACAATA
1 ATAATAATAATAATA
96938931 ATAGTAAAAG
Statistics
Matches: 261, Mismatches: 10, Indels: 13
0.92 0.04 0.05
Matches are distributed among these distances:
128 82 0.31
129 5 0.02
130 37 0.14
131 37 0.14
132 5 0.02
133 21 0.08
135 14 0.05
136 60 0.23
ACGTcount: A:0.60, C:0.06, G:0.04, T:0.30
Consensus pattern (133 bp):
ATAATAATAATAATATTGAAATACAAAAAGCAAATATAATAAAAATATTAAAATAAAGTAATAAA
AAATAATACTATATATAAATATATATACATATACGTATATAATAAAAAGTATACACTACTATATA
ATA
Found at i:96938770 original size:26 final size:23
Alignment explanation
Indices: 96938688--96938791 Score: 78
Period size: 24 Copynumber: 4.6 Consensus size: 23
96938678 CAAAAAGCAA
96938688 ATATAATAAAAATATTA-AA-A-T
1 ATATAATAAAAATA-TACAATACT
*
96938709 AAAGTAATAAAAA-AT--AATACT
1 ATA-TAATAAAAATATACAATACT
*
96938730 ATAT-ATAAATATATACATATACAT
1 ATATAATAAAAATATACA-ATAC-T
*
96938754 ATATAATAAAAAGTATACACTACT
1 ATATAATAAAAA-TATACAATACT
*
96938778 ATATAATAATAATA
1 ATATAATAAAAATA
96938792 ATAGTATTGA
Statistics
Matches: 67, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
19 8 0.12
20 5 0.07
21 6 0.09
22 10 0.15
23 6 0.09
24 17 0.25
25 9 0.13
26 6 0.09
ACGTcount: A:0.61, C:0.06, G:0.02, T:0.32
Consensus pattern (23 bp):
ATATAATAAAAATATACAATACT
Found at i:96938957 original size:128 final size:128
Alignment explanation
Indices: 96938519--96938955 Score: 571
Period size: 130 Copynumber: 3.3 Consensus size: 128
96938509 AATAATGATG
* * * * *
96938519 ATAATAGTAATAATATTGA-AAT-ATAAAAAGCAAATATAATAAAAATATTAAAATAAAGTAATA
1 ATAATAATAATAATAATAATAATAAT-AAAAGAAAAAATAATAAAAATATTAAAATAAAGTAAT-
*
96938582 AAAAAATAATACTATCTATATAAATATATATACATATACGCATATAATAAAAAGTATACACTACT
64 AAAAAATAATACTA--TATATAAATATATATACATATACGTATATAATAAAAAGTATACACTACT
96938647 AT
127 AT
*
96938649 ATAATAATAATAATAATAATATTGAAATACAAA-AAGCAAATATAATAAAAATATTAAAATAAAG
1 ATAATAATAATAATAATAATAAT--AATA-AAAGAA--AAA-ATAATAAAAATATTAAAATAAAG
*
96938713 TAATAAAAAATAATACTATATAT-AA-ATATATACATATACATATATAATAAAAAGTATACACTA
60 TAATAAAAAATAATACTATATATAAATATATATACATATACGTATATAATAAAAAGTATACACTA
96938776 CTAT
125 CTAT
* * *
96938780 ATAATAATAATAATAGTATTGAAATACA-AAAAGAAAATATAATAAAAATATTAAAATAAAGTAA
1 ATAATAATAATAATAATAAT--AATA-ATAAAAGAAAAAATAATAAAAATATTAAAATAAAGTAA
*
96938844 TAAAAAATAATACTATATATAAATATATATACATATACGTATATAATAAAAAGTATGCACTACTA
63 TAAAAAATAATACTATATATAAATATATATACATATACGTATATAATAAAAAGTATACACTACTA
96938909 T
128 T
* *
96938910 ATAATAATAATAATAACAATAATAGTAAAAGTAAAAAATAAATAAA
1 ATAATAATAATAATAATAATAATAATAAAAG-AAAAAAT-AATAAA
96938956 TAAATAATAG
Statistics
Matches: 271, Mismatches: 19, Indels: 34
0.84 0.06 0.10
Matches are distributed among these distances:
128 55 0.20
129 10 0.04
130 82 0.30
131 64 0.24
132 3 0.01
133 9 0.03
134 5 0.02
135 16 0.06
136 27 0.10
ACGTcount: A:0.61, C:0.06, G:0.04, T:0.29
Consensus pattern (128 bp):
ATAATAATAATAATAATAATAATAATAAAAGAAAAAATAATAAAAATATTAAAATAAAGTAATAA
AAAATAATACTATATATAAATATATATACATATACGTATATAATAAAAAGTATACACTACTAT
Found at i:96939875 original size:23 final size:21
Alignment explanation
Indices: 96939835--96939880 Score: 65
Period size: 23 Copynumber: 2.1 Consensus size: 21
96939825 AGGTGCAAGT
96939835 AGTGGTGACAGGTAGCTGACA
1 AGTGGTGACAGGTAGCTGACA
*
96939856 AGTGGTGGAGCAGGTGGCTGACA
1 AGTGGT-GA-CAGGTAGCTGACA
96939879 AG
1 AG
96939881 GCTAGGGTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 6 0.27
22 2 0.09
23 14 0.64
ACGTcount: A:0.26, C:0.13, G:0.43, T:0.17
Consensus pattern (21 bp):
AGTGGTGACAGGTAGCTGACA
Found at i:96941883 original size:23 final size:24
Alignment explanation
Indices: 96941857--96941915 Score: 77
Period size: 25 Copynumber: 2.5 Consensus size: 24
96941847 ATAATGACAA
*
96941857 TTGTAATAAAA-ATAT-TGGTACAT
1 TTGTAATAAAAGATATAT-GTACAC
96941880 TTGTAATAAATAGATATATGTACAC
1 TTGTAATAAA-AGATATATGTACAC
96941905 TTGTAATAAAA
1 TTGTAATAAAA
96941916 TAATTAAGTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
23 10 0.31
24 2 0.06
25 19 0.59
26 1 0.03
ACGTcount: A:0.46, C:0.05, G:0.12, T:0.37
Consensus pattern (24 bp):
TTGTAATAAAAGATATATGTACAC
Found at i:96944076 original size:20 final size:22
Alignment explanation
Indices: 96944038--96944077 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
96944028 AGGACTTAAC
96944038 TATTATATTATATTATGAATAT
1 TATTATATTATATTATGAATAT
*
96944060 TATTAT-TTAT-TTGTGAAT
1 TATTATATTATATTATGAAT
96944078 TATTTTGTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 4 0.24
22 6 0.35
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (22 bp):
TATTATATTATATTATGAATAT
Found at i:96945743 original size:127 final size:127
Alignment explanation
Indices: 96945603--96946061 Score: 518
Period size: 127 Copynumber: 3.6 Consensus size: 127
96945593 GTCGGCTTTA
* * * *
96945603 TAAAACAAAGGCGATGTTTGATGTTTAGAAATTTGAGGGATCGTGCCCTAACGTGTTGGGTTTCA
1 TAAAACAAAGGCGATGATTGATGTTTAGAAATTCGAGGGATCGTGCCCTAACGTGCTGGGTTTCG
*
96945668 ATCTTTCGTTTGTCTAAATAATCAAATTTCCCTTTAAAATTTCGTCCGCATTTTCTAAACTT
66 ATCTTTCGTTTGTCTAAATAATCAAATTTCCCTTTAAAATTTCGTCCACATTTTCTAAACTT
*
96945730 TAAAACAAAGGCGATGATTGATGTTTAGAAATTCGAGGGATCGCGCCCTAACGTGCTGGGTTTCG
1 TAAAACAAAGGCGATGATTGATGTTTAGAAATTCGAGGGATCGTGCCCTAACGTGCTGGGTTTCG
* *
96945795 ATCTTTCGTTTGTCTAAATAATCAAATTTTCCTTTAAAATTTCGTCCACGTTTTCTAAACTT
66 ATCTTTCGTTTGTCTAAATAATCAAATTTCCCTTTAAAATTTCGTCCACATTTTCTAAACTT
* * * * * * *
96945857 TAAAATAGAGGCGATGATTGATGTTTGGGAATTCG-GGAAATCGTGCCCTAACGTGCTAGGTTTT
1 TAAAACAAAGGCGATGATTGATGTTTAGAAATTCGAGG-GATCGTGCCCTAACGTGCTGGGTTTC
* * * * * * *
96945921 GAT-TTTCTATTTAG-CCAAATAATCAAATATCCCTTTAAAATTCCGCCCACGTTTTCTTCAA-T
65 GATCTTTC-GTTT-GTCTAAATAATCAAATTTCCCTTTAAAATTTCGTCCACATTTTC-TAAACT
*
96945983 A
127 T
* * * * ** * *
96945984 AAAAAAATAAGGCAAT-ATTTCG-TGTTTGGAAATTCGAGAAATTGTGCCCTAACATGCTGGGTT
1 TAAAACA-AAGGCGATGA-TT-GATGTTTAGAAATTCGAGGGATCGTGCCCTAACGTGCTGGGTT
96946047 TCGAT-TTATCGTTTG
63 TCGATCTT-TCGTTTG
96946062 ACCGAATAAC
Statistics
Matches: 288, Mismatches: 35, Indels: 18
0.84 0.10 0.05
Matches are distributed among these distances:
126 6 0.02
127 223 0.77
128 55 0.19
129 4 0.01
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (127 bp):
TAAAACAAAGGCGATGATTGATGTTTAGAAATTCGAGGGATCGTGCCCTAACGTGCTGGGTTTCG
ATCTTTCGTTTGTCTAAATAATCAAATTTCCCTTTAAAATTTCGTCCACATTTTCTAAACTT
Found at i:96949392 original size:19 final size:19
Alignment explanation
Indices: 96949351--96949405 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
96949341 CATTTTTTTT
* *
96949351 TGCATT-CATTTCATTCATT
1 TGCATTACATTTCA-TGATA
96949370 TGCATTACATTTCATGATA
1 TGCATTACATTTCATGATA
*
96949389 TGCATTAAATTTCATGA
1 TGCATTACATTTCATGA
96949406 AAAGACCCTA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
19 25 0.78
20 7 0.22
ACGTcount: A:0.29, C:0.16, G:0.09, T:0.45
Consensus pattern (19 bp):
TGCATTACATTTCATGATA
Found at i:96971552 original size:44 final size:44
Alignment explanation
Indices: 96971438--96972248 Score: 443
Period size: 44 Copynumber: 18.0 Consensus size: 44
96971428 AGTAGAAGTT
* * **
96971438 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-CC
* * *
96971483 GCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCC
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCC
* * * * * **
96971527 ACTAACCTTATCTCCCTGAAGTTGCAATGGAGTAGGTTGAAGTT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCC
* * *
96971571 ACAAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGAC
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCC
* * * *
96971615 AGCAAAACTTATCTCCCTGAAGTTGTAGTGGGGCAGATCGAAGCC
1 A-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCC
* * * * * **
96971660 ACTAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGGTTAAAGTT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCC
* * * *
96971704 ACAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGAC
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCC
*
96971748 AGCAAATCTTATCTCCCTGAAGTTGCAGTGGGGCAGATTGAAGCTACAAGTC
1 A-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG---C----C
* * ** * * * **
96971800 ACAAACCTAATCTTTCTGAGGTTGCTGTAGG-GCA-AGTGGAAGTT
1 ACAAATCTTATCTCCCTGAAGTTGCAGT-GGAGCAGA-TTGAAGCC
* * * **
96971844 ACAAGTCTTATCTCCCT-AAGGTTACAGTGGAGCAGACTGAAGAT
1 ACAAATCTTATCTCCCTGAA-GTTGCAGTGGAGCAGATTGAAGCC
** * * * **
96971888 AGTGAATCTTATCTCCCTAAAGTTACAGTGGAGCAGGTTGAAGTT
1 A-CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCC
* * * ** *
96971933 ATAAGTCTTATCTCCCTGAAGTCGCAGTGGAAAAGATTGAAGAC
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCC
* * * *
96971977 AGCGAATCTTATCTCACTAAAGTCGCAGTGG-GACAGATTGAAGCTAC
1 A-CAAATCTTATCTCCCTGAAGTTGCAGTGGAG-CAGATTGAAGC--C
* * * * * **
96972024 AGGTCGCAAACCTAATC-CCTCTGAGGTTGCAGTGGGGCA-AGTGGAAGTT
1 A-----CAAATCTTATCTCC-CTGAAGTTGCAGTGGAGCAGA-TTGAAGCC
* * * * **
96972073 ACAATTCTTATCTCCCTGAGGTTGCAGTGGGGCA-AGTGGAAGTT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTGAAGCC
** * * **
96972117 ACAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGGTTGAAGTT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCC
* * ** * **
96972161 ATAAGTCTTATCTCCCTGAAGTCACAGAGG-GACAGATTGAAGAT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAG-CAGATTGAAGCC
** * * *
96972205 AGTGAATCTTATCTCACTAAAGTCGCAGTGG-GACAGATTGAAGC
1 A-CAAATCTTATCTCCCTGAAGTTGCAGTGGAG-CAGATTGAAGC
96972249 TACAGGTCGC
Statistics
Matches: 603, Mismatches: 132, Indels: 62
0.76 0.17 0.08
Matches are distributed among these distances:
43 4 0.01
44 312 0.52
45 217 0.36
46 2 0.00
47 2 0.00
49 1 0.00
50 3 0.00
51 57 0.09
52 5 0.01
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.26
Consensus pattern (44 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCC
Found at i:96971607 original size:133 final size:133
Alignment explanation
Indices: 96971284--96972182 Score: 641
Period size: 133 Copynumber: 6.6 Consensus size: 133
96971274 TAATAAGCAT
* * * *
96971284 AGGTTGAAGTTACAAGTCTTATTTCCCTGAAGTTGCAGTGAAGTGAAG-AGATTGAAGACAGCGA
1 AGGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTGCAGT--A--G-AGCAGATTAAAGACAGCAA
* * * * * *
96971348 ATCTTATCTCCCTGAAGTTGCAGTGGGGAAGATTGAAGCTACAAGTCACAAACCTAATCTCTCTG
61 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAG---C----CACTAACCTTATCTCCCTG
* *
96971413 -AGCTTG-TGTGGGGC
119 AAG-TTGCAGTGGAGC
* * * * ** *
96971427 AAGTAGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATGGCGAATCTT
1 AGGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGACAGCAAATCTT
*
96971492 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACTAACCTTATCTCCCTGAAGTTGCAATGG
66 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACTAACCTTATCTCCCTGAAGTTGCAGTGG
*
96971557 AGT
131 AGC
* * *
96971560 AGGTTGAAGTTACAAATCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTGAAGACAGCAAAACTT
1 AGGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGACAGCAAATCTT
* * *
96971625 ATCTCCCTGAAGTTGTAGTGGGGCAGATCGAAGCCACTAACCTTATCTCCCTAAAGTTGCAGTGG
66 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACTAACCTTATCTCCCTGAAGTTGCAGTGG
96971690 AGC
131 AGC
* *
96971693 AGGTTAAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGACAGCAAATCTT
1 AGGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGACAGCAAATCTT
* * * * ** *
96971758 ATCTCCCTGAAGTTGCAGTGGGGCAGATTGAAGCTACAAGTCACAAACCTAATCTTTCTGAGGTT
66 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAG---C----CACTAACCTTATCTCCCTGAAGTT
*
96971823 GCTGTAGG-GC
124 GCAGT-GGAGC
* * * * * * * * **
96971833 AAGTGGAAGTTACAAGTCTTATCTCCCTAAGGTTACAGTGGAGCAGACTGAAGATAGTGAATCTT
1 AGGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGACAGCAAATCTT
* * * * ** * *
96971898 ATCTCCCTAAAGTTACAGTGGAGCAGGTTGAAGTTA-TAAGTCTTATCTCCCTGAAGTCGCAGTG
66 ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACTAA-CCTTATCTCCCTGAAGTTGCAGTG
**
96971962 GAAA
130 GAGC
* ** * * * *
96971966 AGATTGAAGACAGCGAA-TCTTATCTCACTAAAGTCGCAGT-GGGACAGATTGAAGCTACAGGTC
1 AGGTTGAAGTTA-C-AAGTCTTATCTCCCTAAAGTTGCAGTAGAG-CAGATTAAAG--ACA----
* * * * * ** *
96972029 GCAAACCTAATC-CCTCTGAGGTTGCAGTGGGGCA-AGTGGAAGTTAC-AATTCTTATCTCCCTG
57 GCAAATCTTATCTCC-CTGAAGTTGCAGTGGAGCAGA-TCGAAGCCACTAA-CCTTATCTCCCTG
* *
96972091 AGGTTGCAGTGGGGC
119 AAGTTGCAGTGGAGC
* * * * * * * * ** * *
96972106 AAGTGGAAGTTACAGGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGGTTGAAGTTA-TAAGTCTT
1 AGGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGACAGCAAATCTT
96972170 ATCTCCCTGAAGT
66 ATCTCCCTGAAGT
96972183 CACAGAGGGA
Statistics
Matches: 607, Mismatches: 121, Indels: 67
0.76 0.15 0.08
Matches are distributed among these distances:
132 36 0.06
133 243 0.40
134 29 0.05
135 2 0.00
136 4 0.01
137 1 0.00
138 3 0.00
139 80 0.13
140 171 0.28
141 2 0.00
143 36 0.06
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (133 bp):
AGGTTGAAGTTACAAGTCTTATCTCCCTAAAGTTGCAGTAGAGCAGATTAAAGACAGCAAATCTT
ATCTCCCTGAAGTTGCAGTGGAGCAGATCGAAGCCACTAACCTTATCTCCCTGAAGTTGCAGTGG
AGC
Found at i:96971628 original size:89 final size:89
Alignment explanation
Indices: 96971443--96972396 Score: 532
Period size: 89 Copynumber: 10.5 Consensus size: 89
96971433 AAGTTACAAG
* ** * *
96971443 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGATGGCGAATCTTATCTCCCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TTACAAATCTTATCTCCCTAAAGTTGC
* * *
96971508 AGTGGAGCAGATCGAAGCCA-CTAA
65 AGTGGAGCAGATTGAAGACAGCAAA
* * * *
96971532 CCTTATCTCCCTGAAGTTGCAATGGAGTAGGTTGAAGTTACAAATCTTATCTCCCTAAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTAAAGTTGCA
*
96971597 GTAGAGCAGATTGAAGACAGCAAA
66 GTGGAGCAGATTGAAGACAGCAAA
* * * * ** * *
96971621 ACTTATCTCCCTGAAGTTGTAGTGGGGCAGATCGAAGCCACTAACCTTATCTCCCTAAAGTTGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTAAAGTTGCA
* * ** *
96971686 GTGGAGCAGGTTAAAGTTA-CAAG
66 GTGGAGCAGATTGAAGACAGCAAA
* * ** *
96971709 TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGACAGCAAATCTTATCTCCCTGAAGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTA-CAAATCTTATCTCCCTAAAGTTGC
*
96971774 AGTGGGGCAGATTGAAGCTACAAGTCACAAA
65 AGTGGAGCAGATTGAAG--AC-AG---CAAA
* * ** * * * * * *
96971805 CCTAATCTTTCTGAGGTTGCTGTAGG-GCA-AGTGGAAGTTACAAGTCTTATCTCCCTAAGGTTA
1 TCTTATCTCCCTGAAGTTGCAGT-GGAGCAGA-TTGAAGTTACAAATCTTATCTCCCTAAAGTTG
* * **
96971868 CAGTGGAGCAGACTGAAGATAGTGAA
64 CAGTGGAGCAGATTGAAGACAGCAAA
* * * * * * *
96971894 TCTTATCTCCCTAAAGTTACAGTGGAGCAGGTTGAAGTTATAAGTCTTATCTCCCTGAAGTCGCA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTAAAGTTGCA
** *
96971959 GTGGAAAAGATTGAAGACAGCGAA
66 GTGGAGCAGATTGAAGACAGCAAA
* * * * * *
96971983 TCTTATCTCACTAAAGTCGCAGTGG-GACAGATTGAAGCTACAGGTCGCAAACCTAATC-CCTCT
1 TCTTATCTCCCTGAAGTTGCAGTGGAG-CAGATTGAAG-T-----T-ACAAATCTTATCTCC-CT
* * * * ** *
96972046 GAGGTTGCAGTGGGGCA-AGTGGAAGTTA-CAAT
57 AAAGTTGCAGTGGAGCAGA-TTGAAGACAGCAAA
* * * ** * *
96972078 TCTTATCTCCCTGAGGTTGCAGTGGGGCA-AGTGGAAGTTACAGGTCTTATCTCCCTGAGGTTGC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTGAAGTTACAAATCTTATCTCCCTAAAGTTGC
* ** * *
96972142 AGTGGAGCAGGTTGAAGTTA-TAAG
65 AGTGGAGCAGATTGAAGACAGCAAA
** * * ** * *
96972166 TCTTATCTCCCTGAAGTCACAGAGG-GACAGATTGAAGATAGTGAATCTTATCTCACTAAAGTCG
1 TCTTATCTCCCTGAAGTTGCAGTGGAG-CAGATTGAAGTTA-CAAATCTTATCTCCCTAAAGTTG
96972230 CAGTGG-GACAGATTGAAGCTACAGGTCGCAAA
64 CAGTGGAG-CAGATTGAAG--ACA----GCAAA
* * * * * * * *
96972262 CCTAATC-CCTTTGAGGTTGCAGTGGGGCA-AGTAGAAGTTACAAGTCTTATCTCCCTGAAGTTG
1 TCTTATCTCC-CTGAAGTTGCAGTGGAGCAGA-TTGAAGTTACAAATCTTATCTCCCTAAAGTTG
* * * * ***
96972325 CAGTAGAGTAGACTGAAGATAGTGGA
64 CAGTGGAGCAGATTGAAGACAGCAAA
* * ** * *
96972351 TCTTATTTCCCTGAAGTTGCAATGGAATAGATTAAAGATACAAATC
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATC
96972397 ACAAATCTTG
Statistics
Matches: 647, Mismatches: 174, Indels: 88
0.71 0.19 0.10
Matches are distributed among these distances:
87 1 0.00
88 145 0.22
89 300 0.46
90 4 0.01
91 1 0.00
92 3 0.00
93 3 0.00
94 2 0.00
95 103 0.16
96 83 0.13
97 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.27
Consensus pattern (89 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTTACAAATCTTATCTCCCTAAAGTTGCA
GTGGAGCAGATTGAAGACAGCAAA
Found at i:96971900 original size:45 final size:44
Alignment explanation
Indices: 96971849--96972019 Score: 159
Period size: 45 Copynumber: 3.8 Consensus size: 44
96971839 AAGTTACAAG
*
96971849 TCTTATCTCCCTAAGGTTACAGTGGAGCAGACTGAAGATAGTGAA
1 TCTTATCTCCCTAA-GTTACAGTGGAGCAGATTGAAGATAGTGAA
* *
96971894 TCTTATCTCCCTAAAGTTACAGTGGAGCAGGTTGAAGTTA-T-AA
1 TCTTATCTCCCT-AAGTTACAGTGGAGCAGATTGAAGATAGTGAA
** ** * *
96971937 GTCTTATCTCCCTGAAGTCGCAGTGGAAAAGATTGAAGACAGCGAA
1 -TCTTATCTCCCT-AAGTTACAGTGGAGCAGATTGAAGATAGTGAA
* **
96971983 TCTTATCTCACTAAAGTCGCAGTGG-GACAGATTGAAG
1 TCTTATCTCCCT-AAGTTACAGTGGAG-CAGATTGAAG
96972020 CTACAGGTCG
Statistics
Matches: 105, Mismatches: 16, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
43 2 0.02
44 33 0.31
45 66 0.63
46 4 0.04
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (44 bp):
TCTTATCTCCCTAAGTTACAGTGGAGCAGATTGAAGATAGTGAA
Found at i:96972220 original size:228 final size:229
Alignment explanation
Indices: 96971622--96972376 Score: 980
Period size: 228 Copynumber: 3.3 Consensus size: 229
96971612 GACAGCAAAA
* * * ** * *
96971622 CTTATCTCCCTGAAGTTGTAGTGGGGCAGA-TCGAAGCCAC-TAACCTTATCTCCCTAAAGTTGC
1 CTTATCTCCCTGAGGTTGCAGTGGAGCAGACT-GAAGATACAGAATCTTATCTCCCTAAAGTTGC
* * * * *
96971685 AGTGGAGCAGGTTAAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTAGAG-CAGATTAAAGACA
65 AGTGGAGCAGGTTGAAGTTATAAGTCTTATCTCCCTGAAGTCGCAG-AGGGACAGATTGAAGACA
* * * * * * * **
96971749 GCAAATCTTATCTCCCTGAAGTTGCAGTGGGGCAGATTGAAGCTACAAGTCACAAACCTAATCTT
129 GCGAATCTTATCTCACTAAAGTCGCAGTGGGACAGATTGAAGCTACAGGTCGCAAACCTAATCCC
* *
96971814 TCTGAGGTTGCTGTAGGGCAAGTGGAAGTTACAAGT
194 TCTGAGGTTGCAGTGGGGCAAGTGGAAGTTACAAGT
* * ** *
96971850 CTTATCTCCCTAAGGTTACAGTGGAGCAGACTGAAGATAGTGAATCTTATCTCCCTAAAGTTACA
1 CTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAAGATACAGAATCTTATCTCCCTAAAGTTGCA
* * *
96971915 GTGGAGCAGGTTGAAGTTATAAGTCTTATCTCCCTGAAGTCGCAGTGGAAAAGATTGAAGACAGC
66 GTGGAGCAGGTTGAAGTTATAAGTCTTATCTCCCTGAAGTCGCAGAGGGACAGATTGAAGACAGC
96971980 GAATCTTATCTCACTAAAGTCGCAGTGGGACAGATTGAAGCTACAGGTCGCAAACCTAATCCCTC
131 GAATCTTATCTCACTAAAGTCGCAGTGGGACAGATTGAAGCTACAGGTCGCAAACCTAATCCCTC
*
96972045 TGAGGTTGCAGTGGGGCAAGTGGAAGTTACAATT
196 TGAGGTTGCAGTGGGGCAAGTGGAAGTTACAAGT
* * * * * *
96972079 CTTATCTCCCTGAGGTTGCAGTGGGGCA-AGTGGAAGTTACAG-GTCTTATCTCCCTGAGGTTGC
1 CTTATCTCCCTGAGGTTGCAGTGGAGCAGACT-GAAGATACAGAATCTTATCTCCCTAAAGTTGC
* *
96972142 AGTGGAGCAGGTTGAAGTTATAAGTCTTATCTCCCTGAAGTCACAGAGGGACAGATTGAAGATAG
65 AGTGGAGCAGGTTGAAGTTATAAGTCTTATCTCCCTGAAGTCGCAGAGGGACAGATTGAAGACAG
*
96972207 TGAATCTTATCTCACTAAAGTCGCAGTGGGACAGATTGAAGCTACAGGTCGCAAACCTAATCCCT
130 CGAATCTTATCTCACTAAAGTCGCAGTGGGACAGATTGAAGCTACAGGTCGCAAACCTAATCCCT
* *
96972272 TTGAGGTTGCAGTGGGGCAAGTAGAAGTTACAAGT
195 CTGAGGTTGCAGTGGGGCAAGTGGAAGTTACAAGT
* * * ** * * *
96972307 CTTATCTCCCTGAAGTTGCAGTAGAGTAGACTGAAGATAGTGGATCTTATTTCCCTGAAGTTGCA
1 CTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAAGATACAGAATCTTATCTCCCTAAAGTTGCA
*
96972372 ATGGA
66 GTGGA
96972377 ATAGATTAAA
Statistics
Matches: 458, Mismatches: 63, Indels: 11
0.86 0.12 0.02
Matches are distributed among these distances:
228 237 0.52
229 221 0.48
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (229 bp):
CTTATCTCCCTGAGGTTGCAGTGGAGCAGACTGAAGATACAGAATCTTATCTCCCTAAAGTTGCA
GTGGAGCAGGTTGAAGTTATAAGTCTTATCTCCCTGAAGTCGCAGAGGGACAGATTGAAGACAGC
GAATCTTATCTCACTAAAGTCGCAGTGGGACAGATTGAAGCTACAGGTCGCAAACCTAATCCCTC
TGAGGTTGCAGTGGGGCAAGTGGAAGTTACAAGT
Found at i:96972413 original size:140 final size:140
Alignment explanation
Indices: 96972133--96972430 Score: 321
Period size: 140 Copynumber: 2.1 Consensus size: 140
96972123 CTTATCTCCC
* * * * *
96972133 TGAGGTTGCAGTGGAGCAGGTTGAAGTTATAAGTCTTATCTCCCTGAAGTCACAGAGGGACAGAT
1 TGAGGTTGCAGTGGAGCAAGTAGAAGTTACAAGTCTTATCTCCCTGAAGTCACAGAGAGACAGAC
* * * * ** *
96972198 TGAAGATAGTGAATCTTATCTCACTAAAGTCGCAGTGGGACAGATTGAAGCTACAGGTCGCAAAC
66 TGAAGATAGTGAATCTTATCTCACTAAAGTCGCAATGGAACAGATTAAAGATACAAATCACAAAC
*
96972263 CTAATCCCTT
131 CTAATACCTT
* ** *
96972273 TGAGGTTGCAGTGGGGCAAGTAGAAGTTACAAGTCTTATCTCCCTGAAGTTGCAGTAGAG-TAGA
1 TGAGGTTGCAGTGGAGCAAGTAGAAGTTACAAGTCTTATCTCCCTGAAGTCACAG-AGAGACAGA
* * * * * *
96972337 CTGAAGATAGTGGATCTTATTTCCCTGAAGTTGCAATGGAATAGATTAAAGATACAAATCACAAA
65 CTGAAGATAGTGAATCTTATCTCACTAAAGTCGCAATGGAACAGATTAAAGATACAAATCACAAA
* **
96972402 TCTTGTACCTT
130 CCTAATACCTT
*
96972413 TG-GAGTTGCAGTAGAGCA
1 TGAG-GTTGCAGTGGAGCA
96972431 TATTGAAGAT
Statistics
Matches: 128, Mismatches: 28, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
139 1 0.01
140 124 0.97
141 3 0.02
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.27
Consensus pattern (140 bp):
TGAGGTTGCAGTGGAGCAAGTAGAAGTTACAAGTCTTATCTCCCTGAAGTCACAGAGAGACAGAC
TGAAGATAGTGAATCTTATCTCACTAAAGTCGCAATGGAACAGATTAAAGATACAAATCACAAAC
CTAATACCTT
Found at i:96974845 original size:127 final size:126
Alignment explanation
Indices: 96974705--96975064 Score: 483
Period size: 127 Copynumber: 2.8 Consensus size: 126
96974695 GTCGACTTTA
* *
96974705 TAAAACAAAGGCGATGTTTGATGTTTAGAAATTCGAGGGATCGTGCCCTAACGTACTGGGTTTCG
1 TAAAATAAAGGCGATGATTGATGTTTAGAAATTCGAGGGATCGTGCCCTAACGTACTGGGTTTCG
*
96974770 ATCTTTCGTTTGTCTAAATAATCAAATTTCACTTTAAAATTTCATCCGCATTTTCTAAACTT
66 ATCTTTCGTTTGTCTAAATAATCAAATTTC-CTTTAAAATTTCATCCACATTTTCTAAACTT
* * * *
96974832 TAAAATAAAGGCGATGATTGATGTTTAGAAATTCGAGGGATTGTGCCCTAACGTGCTAGGTTTTG
1 TAAAATAAAGGCGATGATTGATGTTTAGAAATTCGAGGGATCGTGCCCTAACGTACTGGGTTTCG
* *
96974897 ATCTTTCGTTTGTCTAAATAATCAAATTTTCCTTTAAAATTTCGTCCACGTTTTCTAAACTT
66 ATCTTTCGTTTGTCTAAATAATCAAA-TTTCCTTTAAAATTTCATCCACATTTTCTAAACTT
* * * * * *
96974959 TAAAATAGAGGCAATGATTGATGTTTGGGAATTCG-GGAAATCGTGCCCTAACGTCCTGGGTTTC
1 TAAAATAAAGGCGATGATTGATGTTTAGAAATTCGAGG-GATCGTGCCCTAACGTACTGGGTTTC
* * *
96975023 GAT-TTTCTGTTTAG-CCAAATAATCAAATCTCTTTTTAAAATT
65 GATCTTTC-GTTT-GTCTAAATAATCAAATTTC-CTTTAAAATT
96975065 CCGTTCACGT
Statistics
Matches: 207, Mismatches: 21, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
126 9 0.04
127 193 0.93
128 5 0.02
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.38
Consensus pattern (126 bp):
TAAAATAAAGGCGATGATTGATGTTTAGAAATTCGAGGGATCGTGCCCTAACGTACTGGGTTTCG
ATCTTTCGTTTGTCTAAATAATCAAATTTCCTTTAAAATTTCATCCACATTTTCTAAACTT
Found at i:96975100 original size:127 final size:125
Alignment explanation
Indices: 96974722--96975162 Score: 448
Period size: 127 Copynumber: 3.5 Consensus size: 125
96974712 AAGGCGATGT
* *
96974722 TTGATGTTTAGAAATTCGAGGGATCGTGCCCTAACGTACTGGGTTTCGATCTTTCGTTTGTCTAA
1 TTGATGTTTAGAAATTCGAGGAATCGTGCCCTAACGTGCTGGGTTTCGATCTTTCGTTTGTCTAA
** * * * *
96974787 ATAATCAAATTTCACTTTAAAATTTCATCCGCATTTTCTAAACTTTAAAATAAAGGCGATGA
66 ATAATCAAA-TTCTTTTTAAAATTTCGTCCACGTTTTCTAAACTTTAAAATAAA-GCAATGA
* * * *
96974849 TTGATGTTTAGAAATTCGAGGGATTGTGCCCTAACGTGCTAGGTTTTGATCTTTCGTTTGTCTAA
1 TTGATGTTTAGAAATTCGAGGAATCGTGCCCTAACGTGCTGGGTTTCGATCTTTCGTTTGTCTAA
*
96974914 ATAATCAAATT-TTCCTTTAAAATTTCGTCCACGTTTTCTAAACTTTAAAATAGAGGCAATGA
66 ATAATCAAATTCTT--TTTAAAATTTCGTCCACGTTTTCTAAACTTTAAAATA-AAGCAATGA
* * *
96974976 TTGATGTTTGGGAATTCG-GGAAATCGTGCCCTAACGTCCTGGGTTTCGAT-TTTCTGTTTAG-C
1 TTGATGTTTAGAAATTCGAGG-AATCGTGCCCTAACGTGCTGGGTTTCGATCTTTC-GTTT-GTC
* * * * **
96975038 CAAATAATCAAATCTCTTTTTAAAATTCCGTTCACGTTTTCTTCAA-TAAAAAAATAAAGCAAT-
63 TAAATAATCAAAT-TCTTTTTAAAATTTCGTCCACGTTTTC-TAAACT-TTAAAATAAAGCAATG
96975101 A
125 A
* * * * * *
96975102 TTTCG-TGTTTGGAAATTCAAGAAATCGTACCCTGACGTGCTGGGTTTTGAT-TTATCGTTTG
1 -TT-GATGTTTAGAAATTCGAGGAATCGTGCCCTAACGTGCTGGGTTTCGATCTT-TCGTTTG
96975163 ACCGAATAAC
Statistics
Matches: 268, Mismatches: 32, Indels: 29
0.81 0.10 0.09
Matches are distributed among these distances:
126 10 0.04
127 240 0.90
128 16 0.06
129 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (125 bp):
TTGATGTTTAGAAATTCGAGGAATCGTGCCCTAACGTGCTGGGTTTCGATCTTTCGTTTGTCTAA
ATAATCAAATTCTTTTTAAAATTTCGTCCACGTTTTCTAAACTTTAAAATAAAGCAATGA
Found at i:96978503 original size:30 final size:30
Alignment explanation
Indices: 96978469--96978547 Score: 115
Period size: 30 Copynumber: 2.6 Consensus size: 30
96978459 ATTTTGATGT
96978469 TTATTTGAATTAGATTGAATTGT-TTCATGA
1 TTATTTGAATTAGATTGAATTGTGTT-ATGA
* *
96978499 TTATTTGAATTAGGTTGAATTGTGTTATGG
1 TTATTTGAATTAGATTGAATTGTGTTATGA
*
96978529 TTATTTGAATTAAATTGAA
1 TTATTTGAATTAGATTGAA
96978548 CTGATCGAGT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
30 42 0.95
31 2 0.05
ACGTcount: A:0.30, C:0.01, G:0.19, T:0.49
Consensus pattern (30 bp):
TTATTTGAATTAGATTGAATTGTGTTATGA
Found at i:96985993 original size:3 final size:3
Alignment explanation
Indices: 96985985--96986015 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
96985975 GTTGGAACCA
96985985 GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG G
1 GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG G
96986016 GGGCGGTGGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.68, T:0.32
Consensus pattern (3 bp):
GTG
Found at i:96986696 original size:22 final size:22
Alignment explanation
Indices: 96986649--96986693 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
96986639 CACCATCATG
* *
96986649 TAGTAGTTACTTTTTTTTTTAAA
1 TAGTAGTAACTTTTTTTGTT-AA
96986672 TAGTAGTAACTTTTTCTTGTTA
1 TAGTAGTAACTTTTT-TTGTTA
96986694 TAGGGAAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.24, C:0.07, G:0.11, T:0.58
Consensus pattern (22 bp):
TAGTAGTAACTTTTTTTGTTAA
Found at i:96987611 original size:17 final size:16
Alignment explanation
Indices: 96987585--96987620 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
96987575 TTATCATGTA
*
96987585 AATTCGACTTAAAATTC
1 AATTCAACTTAAAA-TC
96987602 AATTCAACTTAAAATC
1 AATTCAACTTAAAATC
96987618 AAT
1 AAT
96987621 CATGAATGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.47, C:0.17, G:0.03, T:0.33
Consensus pattern (16 bp):
AATTCAACTTAAAATC
Found at i:96995289 original size:60 final size:61
Alignment explanation
Indices: 96995181--96995298 Score: 134
Period size: 60 Copynumber: 1.9 Consensus size: 61
96995171 GATATATTAA
* * * * *
96995181 AATTTTATTTTTTTATAATTTATATATTTATAATTTTAAAAAATTAAAT-TAATTTTTTAT
1 AATTTTATTTTTATATAATTTAAATATTTAAAAATTTAAAAAACTAAATATAATTTTTTAT
*
96995241 AATTTTATTTTTAT-TAATTTAAA-ATTTTAAAAAATTTAAAAACCTAAATAATAATTTT
1 AATTTTATTTTTATATAATTTAAATA-TTT-AAAAATTTAAAAAACTAAAT-ATAATTTT
96995299 CTACCACAGA
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
58 1 0.02
59 11 0.23
60 29 0.60
62 7 0.15
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (61 bp):
AATTTTATTTTTATATAATTTAAATATTTAAAAATTTAAAAAACTAAATATAATTTTTTAT
Found at i:96997877 original size:21 final size:20
Alignment explanation
Indices: 96997856--96997901 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
96997846 TATGAATAAT
*
96997856 TTTA-AATATTATATAAAAAA
1 TTTATAATAATAT-TAAAAAA
96997876 TTTATAATAATATTAAAAAA
1 TTTATAATAATATTAAAAAA
*
96997896 ATTATA
1 TTTATA
96997902 GAAAATAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
TTTATAATAATATTAAAAAA
Found at i:96997908 original size:21 final size:20
Alignment explanation
Indices: 96997869--96997908 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
96997859 AAATATTATA
* *
96997869 TAAAAAATTTATAATAATAT
1 TAAAAAAATTATAAAAATAT
96997889 TAAAAAAATTATAGAAAATA
1 TAAAAAAATTATA-AAAATA
96997909 ATTTAATATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (20 bp):
TAAAAAAATTATAAAAATAT
Found at i:97004279 original size:18 final size:19
Alignment explanation
Indices: 97004256--97004315 Score: 59
Period size: 20 Copynumber: 3.1 Consensus size: 19
97004246 TTTATTATTG
97004256 ATAAATATTTTTAAAAAT-
1 ATAAATATTTTTAAAAATA
** *
97004274 ATAAATAATTAATAAAATTA
1 ATAAAT-ATTTTTAAAAATA
*
97004294 ATAAAATATTTTTAAATATA
1 AT-AAATATTTTTAAAAATA
97004314 AT
1 AT
97004316 TTTTATAAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
18 6 0.19
19 9 0.28
20 13 0.41
21 4 0.12
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
ATAAATATTTTTAAAAATA
Found at i:97008891 original size:8 final size:8
Alignment explanation
Indices: 97008875--97008909 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
97008865 AATTGAAGGA
97008875 ATACATGC
1 ATACATGC
*
97008883 ATGCATGC
1 ATACATGC
97008891 ATACATGC
1 ATACATGC
*
97008899 ATACATAC
1 ATACATGC
97008907 ATA
1 ATA
97008910 TCATCATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.26
Consensus pattern (8 bp):
ATACATGC
Found at i:97008899 original size:12 final size:12
Alignment explanation
Indices: 97008875--97008908 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
97008865 AATTGAAGGA
*
97008875 ATACATGCATGC
1 ATACATACATGC
*
97008887 ATGCATACATGC
1 ATACATACATGC
97008899 ATACATACAT
1 ATACATACAT
97008909 ATCATCATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (12 bp):
ATACATACATGC
Found at i:97010866 original size:123 final size:122
Alignment explanation
Indices: 97010647--97010895 Score: 480
Period size: 123 Copynumber: 2.0 Consensus size: 122
97010637 ATACATTCAA
97010647 AACACCTTTTACAACTTACACTAGAATCTGAAAACTATATCGTGGAGCGGATAGAACTAACTGTA
1 AACACCTTTTACAACTTACACTAGAATCTGAAAACTATATCGTGGAGCGGATAGAACTAACTGTA
97010712 GCTTTGATCAAAGCCAGTGAAAGACTAAACACACAAGCTACTGCATTTAACTTCACTT
66 GCTTTGATCAAAGCCAGTGAAAGACTAAACACACAAGCTACTGCATTTAACTTCAC-T
*
97010770 AACACCTTTTACAACTTACACTAGAATCTGAAAACTATCTCGTGGAGCGGATAGAACTAACTGTA
1 AACACCTTTTACAACTTACACTAGAATCTGAAAACTATATCGTGGAGCGGATAGAACTAACTGTA
97010835 GCTTTGATCAAAGCCAGTGAAAGACTAAACACACAAGCTACTGCATTTAACTTCACT
66 GCTTTGATCAAAGCCAGTGAAAGACTAAACACACAAGCTACTGCATTTAACTTCACT
97010892 AACA
1 AACA
97010896 TAACACTTAT
Statistics
Matches: 125, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
122 5 0.04
123 120 0.96
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.25
Consensus pattern (122 bp):
AACACCTTTTACAACTTACACTAGAATCTGAAAACTATATCGTGGAGCGGATAGAACTAACTGTA
GCTTTGATCAAAGCCAGTGAAAGACTAAACACACAAGCTACTGCATTTAACTTCACT
Found at i:97018079 original size:17 final size:17
Alignment explanation
Indices: 97018057--97018092 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
97018047 CCTATTTTTT
*
97018057 TAATTTGAGTACCAAAA
1 TAATTTAAGTACCAAAA
*
97018074 TAATTTAAGTATCAAAA
1 TAATTTAAGTACCAAAA
97018091 TA
1 TA
97018093 GAAAAATGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.50, C:0.08, G:0.08, T:0.33
Consensus pattern (17 bp):
TAATTTAAGTACCAAAA
Found at i:97021084 original size:15 final size:16
Alignment explanation
Indices: 97021059--97021088 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
97021049 ACATAAAGCA
97021059 AATTCAAAGCTTAATT
1 AATTCAAAGCTTAATT
97021075 AATT-AAAGCTTAAT
1 AATTCAAAGCTTAAT
97021089 GAACAAACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.37
Consensus pattern (16 bp):
AATTCAAAGCTTAATT
Found at i:97022452 original size:18 final size:18
Alignment explanation
Indices: 97022418--97022452 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
97022408 TCTATATAAT
* *
97022418 AATAAAAATAATCACAAA
1 AATAAAAAAAATAACAAA
97022436 AATAAAAAAAATAACAA
1 AATAAAAAAAATAACAA
97022453 TATTTAATTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.77, C:0.09, G:0.00, T:0.14
Consensus pattern (18 bp):
AATAAAAAAAATAACAAA
Found at i:97027668 original size:26 final size:27
Alignment explanation
Indices: 97027639--97027693 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
97027629 GTCTCATAAT
*
97027639 CTAATATATATATAA-ATAATA-AAAGA
1 CTAAAATATA-ATAATATAATATAAAGA
97027665 CTAAAATATAATAATATAATATAAAGA
1 CTAAAATATAATAATATAATATAAAGA
97027692 CT
1 CT
97027694 TTGAAAGCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 4 0.15
26 15 0.58
27 7 0.27
ACGTcount: A:0.60, C:0.05, G:0.04, T:0.31
Consensus pattern (27 bp):
CTAAAATATAATAATATAATATAAAGA
Found at i:97027672 original size:28 final size:27
Alignment explanation
Indices: 97027641--97027693 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
97027631 CTCATAATCT
97027641 AATATATATATAAATAATA-AAAGACTAA
1 AATATA-ATA-AAATAATATAAAGACTAA
*
97027669 AATATAATAATATAATATAAAGACT
1 AATATAATAAAATAATATAAAGACT
97027694 TTGAAAGCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 7 0.30
27 10 0.43
28 6 0.26
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (27 bp):
AATATAATAAAATAATATAAAGACTAA
Found at i:97029589 original size:14 final size:14
Alignment explanation
Indices: 97029581--97029616 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
97029571 AAAAAAAAGG
97029581 AGAAAAAAAGAAAA
1 AGAAAAAAAGAAAA
*
97029595 AGAAAAAAAGAAGA
1 AGAAAAAAAGAAAA
97029609 AGATAAAA
1 AGA-AAAA
97029617 GATAAAAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 16 0.80
15 4 0.20
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.03
Consensus pattern (14 bp):
AGAAAAAAAGAAAA
Found at i:97029616 original size:22 final size:23
Alignment explanation
Indices: 97029591--97029639 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 23
97029581 AGAAAAAAAG
97029591 AAAAAGA-AAAAAAG-AAGAAGAT
1 AAAAAGATAAAAAAGTAAGAA-AT
*
97029613 -AAAAGATAAAAAAGTGAGAAAT
1 AAAAAGATAAAAAAGTAAGAAAT
97029635 AAAAA
1 AAAAA
97029640 TAATACACAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
21 6 0.26
22 9 0.39
23 8 0.35
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (23 bp):
AAAAAGATAAAAAAGTAAGAAAT
Found at i:97029623 original size:28 final size:25
Alignment explanation
Indices: 97029572--97029623 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
97029562 GAAACAGTAA
*
97029572 AAAAAAAGGAGAAAAAAAGAAAAAG
1 AAAAAAAGAAGAAAAAAAGAAAAAG
97029597 AAAAAAAGAAGAAGATAAAAGATAAAA
1 AAAAAAAGAAGAA-A-AAAAGA-AAAA
97029624 AAGTGAGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 12 0.52
26 1 0.04
27 6 0.26
28 4 0.17
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.04
Consensus pattern (25 bp):
AAAAAAAGAAGAAAAAAAGAAAAAG
Found at i:97053980 original size:14 final size:14
Alignment explanation
Indices: 97053963--97054024 Score: 63
Period size: 14 Copynumber: 4.4 Consensus size: 14
97053953 GAATTATTTA
*
97053963 TTTATATTTAAATT
1 TTTAAATTTAAATT
*
97053977 TTTAAAATTAAA-T
1 TTTAAATTTAAATT
**
97053990 TTTAAATTTCTATT
1 TTTAAATTTAAATT
*
97054004 TTTGAATTTGAAATT
1 TTTAAATTT-AAATT
97054019 TTTAAA
1 TTTAAA
97054025 AGAAATCGTA
Statistics
Matches: 37, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
13 10 0.27
14 19 0.51
15 8 0.22
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (14 bp):
TTTAAATTTAAATT
Found at i:97053993 original size:21 final size:21
Alignment explanation
Indices: 97053969--97054025 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
97053959 TTTATTTATA
97053969 TTTAAATTTTTAAAATTAAAT
1 TTTAAATTTTTAAAATTAAAT
* *** *
97053990 TTTAAATTTCTATTTTTGAAT
1 TTTAAATTTTTAAAATTAAAT
*
97054011 TTGAAATTTTTAAAA
1 TTTAAATTTTTAAAA
97054026 GAAATCGTAA
Statistics
Matches: 26, Mismatches: 10, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54
Consensus pattern (21 bp):
TTTAAATTTTTAAAATTAAAT
Found at i:97055959 original size:30 final size:28
Alignment explanation
Indices: 97055902--97055964 Score: 81
Period size: 30 Copynumber: 2.2 Consensus size: 28
97055892 TTTTTTTAAT
*
97055902 TTTAAAAAATTAAAAATTATTAGAATTA
1 TTTAAAAAATTAAAAATTATTACAATTA
*
97055930 TTTAAAAAAGTATAAAAATTATTCCAATTA
1 TTTAAAAAA-T-TAAAAATTATTACAATTA
*
97055960 ATTAA
1 TTTAA
97055965 TCTTTGCTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
28 9 0.30
29 1 0.03
30 20 0.67
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (28 bp):
TTTAAAAAATTAAAAATTATTACAATTA
Found at i:97059571 original size:3 final size:3
Alignment explanation
Indices: 97059512--97059555 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
97059502 ATTTTTATAA
*
97059512 TAT TAG TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
97059556 GCTTATGTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:97062676 original size:20 final size:21
Alignment explanation
Indices: 97062640--97062679 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
97062630 TATTTAATCT
*
97062640 TTATAAAAGAGCTTTTATAAA
1 TTATAAAAGAACTTTTATAAA
97062661 TTATAAAA-AACTTTTATAA
1 TTATAAAAGAACTTTTATAA
97062680 CACGAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.50, C:0.05, G:0.05, T:0.40
Consensus pattern (21 bp):
TTATAAAAGAACTTTTATAAA
Done.