Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 286 of 295
Found at i:97065005 original size:27 final size:27
Alignment explanation
Indices: 97064971--97065024 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
97064961 GCTGAGGATA
97064971 TCATGCAGAGTGTCGATTAAGGTTATC
1 TCATGCAGAGTGTCGATTAAGGTTATC
97064998 TCATGCAGAGTGTCGATTAAGGTTATC
1 TCATGCAGAGTGTCGATTAAGGTTATC
97065025 CCCTTTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (27 bp):
TCATGCAGAGTGTCGATTAAGGTTATC
Found at i:97069823 original size:60 final size:60
Alignment explanation
Indices: 97069696--97069808 Score: 158
Period size: 60 Copynumber: 1.9 Consensus size: 60
97069686 AATAATTGTC
* *
97069696 AAGTTCAAGTCCTAATATGGGAACAATAGCCAAGTTCAATGACTAACTTGGATATAAAAA
1 AAGTTCAAGTCCTAATATGGGAACAATAGCCAAGTTCAATGACTAACTTGGACACAAAAA
* *
97069756 AAGTTCAAGTCCTAATGTGGGAACAATTA-CCAAGTTCAA-GGCTTAACTTGGAC
1 AAGTTCAAGTCCTAATATGGGAACAA-TAGCCAAGTTCAATGAC-TAACTTGGAC
97069809 CCCAAAAGAA
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
59 2 0.04
60 44 0.92
61 2 0.04
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.26
Consensus pattern (60 bp):
AAGTTCAAGTCCTAATATGGGAACAATAGCCAAGTTCAATGACTAACTTGGACACAAAAA
Found at i:97076254 original size:22 final size:22
Alignment explanation
Indices: 97076211--97076255 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
97076201 CGATATATAG
*
97076211 ATATAGATATGAATATGCAAAT
1 ATATAGATATGAATATGAAAAT
*
97076233 ATATATATATGGAA-ATGAAAAT
1 ATATAGATAT-GAATATGAAAAT
97076255 A
1 A
97076256 ACGTGAAAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.53, C:0.02, G:0.13, T:0.31
Consensus pattern (22 bp):
ATATAGATATGAATATGAAAAT
Found at i:97082891 original size:13 final size:13
Alignment explanation
Indices: 97082873--97082919 Score: 67
Period size: 13 Copynumber: 3.5 Consensus size: 13
97082863 CGCGACATAT
97082873 TATTTTATTAATA
1 TATTTTATTAATA
*
97082886 TATTTTTTTAATA
1 TATTTTATTAATA
*
97082899 TATTATTATTATTA
1 TATT-TTATTAATA
97082913 TATTTTA
1 TATTTTA
97082920 AAAAAAATTC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
13 19 0.63
14 11 0.37
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
TATTTTATTAATA
Found at i:97085721 original size:18 final size:18
Alignment explanation
Indices: 97085700--97085748 Score: 89
Period size: 18 Copynumber: 2.7 Consensus size: 18
97085690 GGAGGTAGAT
*
97085700 CCAGAGCCAGAGCCGAAG
1 CCAGAGCCGGAGCCGAAG
97085718 CCAGAGCCGGAGCCGAAG
1 CCAGAGCCGGAGCCGAAG
97085736 CCAGAGCCGGAGC
1 CCAGAGCCGGAGC
97085749 TACACTCCGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.29, C:0.35, G:0.37, T:0.00
Consensus pattern (18 bp):
CCAGAGCCGGAGCCGAAG
Found at i:97089134 original size:21 final size:18
Alignment explanation
Indices: 97089084--97089135 Score: 50
Period size: 21 Copynumber: 2.6 Consensus size: 18
97089074 AAATACCTTG
97089084 TTTTTCTTCTTCTTTTCC
1 TTTTTCTTCTTCTTTTCC
97089102 TTTCTTCCCTTCTTCTTTCTCTC
1 TTT-TT--CTTCTTCTTT-TC-C
97089125 TTTTTACTTCT
1 TTTTT-CTTCT
97089136 ACTATTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
18 3 0.11
19 2 0.07
21 15 0.54
22 4 0.14
23 4 0.14
ACGTcount: A:0.02, C:0.31, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTTCTTCTTCTTTTCC
Found at i:97089302 original size:27 final size:27
Alignment explanation
Indices: 97089245--97089302 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
97089235 CCTACCTGAC
* *
97089245 AGGCGCGACATGTTGAGCTTGTCAGGT
1 AGGCGCGACATGTGGAGCTTCTCAGGT
*
97089272 AGGCGCGACATGTGGTGCCTTCTCAGG-
1 AGGCGCGACATGTGGAG-CTTCTCAGGT
97089299 AGGC
1 AGGC
97089303 TCAACCCGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 19 0.70
28 8 0.30
ACGTcount: A:0.17, C:0.22, G:0.38, T:0.22
Consensus pattern (27 bp):
AGGCGCGACATGTGGAGCTTCTCAGGT
Found at i:97093712 original size:21 final size:21
Alignment explanation
Indices: 97093687--97093737 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
97093677 TATTGGGATT
97093687 AAGTTTTAAGGGTTTAATTAA
1 AAGTTTTAAGGGTTTAATTAA
* *
97093708 AAGTTCTT-GGGGTTTAATTGA
1 AAGTT-TTAAGGGTTTAATTAA
*
97093729 AACTTTTAA
1 AAGTTTTAA
97093738 AAGTTTTGAG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
20 2 0.08
21 20 0.83
22 2 0.08
ACGTcount: A:0.33, C:0.04, G:0.20, T:0.43
Consensus pattern (21 bp):
AAGTTTTAAGGGTTTAATTAA
Found at i:97096231 original size:23 final size:23
Alignment explanation
Indices: 97096205--97096268 Score: 56
Period size: 28 Copynumber: 2.5 Consensus size: 23
97096195 CCTAGAACGT
97096205 TTTATTATTTAAAATAAAATTAA
1 TTTATTATTTAAAATAAAATTAA
*
97096228 TTTATAATCAAATTTTAAATAAAATTAA
1 TTTAT--T---ATTTAAAATAAAATTAA
*
97096256 TATTATTAATTAA
1 T-TTATTATTTAA
97096269 TAACTTAGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 11
0.70 0.07 0.24
Matches are distributed among these distances:
23 5 0.16
24 4 0.12
25 1 0.03
27 1 0.03
28 17 0.53
29 4 0.12
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (23 bp):
TTTATTATTTAAAATAAAATTAA
Found at i:97098448 original size:18 final size:19
Alignment explanation
Indices: 97098425--97098460 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
97098415 GTAGGGTTTA
97098425 TTAGAT-AAAAAATTAATG
1 TTAGATCAAAAAATTAATG
97098443 TTAGATCAAAAAATTAAT
1 TTAGATCAAAAAATTAAT
97098461 AGGGGTCTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.56, C:0.03, G:0.08, T:0.33
Consensus pattern (19 bp):
TTAGATCAAAAAATTAATG
Found at i:97101268 original size:75 final size:75
Alignment explanation
Indices: 97101143--97101297 Score: 213
Period size: 75 Copynumber: 2.1 Consensus size: 75
97101133 TACAAAGATA
* * * * *
97101143 AATTTTTAACAGTAAAAATGGATAGAATTTTTAACAAATGGATCAGTTTGCTCTTTGCTCTAATA
1 AATTTTTAACAGCAAAAATAGATAGAATTTTTAACAAATGAATCAATTTGCTCTTTACTCTAATA
**
97101208 TATAGTGACT
66 TATAGAAACT
*
97101218 AATTTTTAACAGCAAAAATAGATGGAATTTTTAACAAAAT-AATCAATTTGCTCTTTACTCTAAT
1 AATTTTTAACAGCAAAAATAGATAGAATTTTTAAC-AAATGAATCAATTTGCTCTTTACTCTAAT
*
97101282 GTATAGAAACT
65 ATATAGAAACT
97101293 AATTT
1 AATTT
97101298 GTCATTTTTT
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
75 66 0.94
76 4 0.06
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.38
Consensus pattern (75 bp):
AATTTTTAACAGCAAAAATAGATAGAATTTTTAACAAATGAATCAATTTGCTCTTTACTCTAATA
TATAGAAACT
Found at i:97102947 original size:31 final size:31
Alignment explanation
Indices: 97102877--97102937 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
97102867 AATTGGTAAC
* * *
97102877 TGAATTATTTAAAAGTTTTCATTTAGGTCAA
1 TGAACTATTTAAAAGCTTTCATTTAAGTCAA
*
97102908 TGAACTATTTGAAAGCTTTCATTTAAGTCA
1 TGAACTATTTAAAAGCTTTCATTTAAGTCA
97102938 TTAGACTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.34, C:0.10, G:0.13, T:0.43
Consensus pattern (31 bp):
TGAACTATTTAAAAGCTTTCATTTAAGTCAA
Found at i:97118227 original size:23 final size:22
Alignment explanation
Indices: 97118167--97118227 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 22
97118157 AACAAAAATC
* *
97118167 ATAAAAATAAAATAAAATAATTT
1 ATAAAAATATAAT-AAATTATTT
97118190 AT-AAAAT-TAA-AAATTATTT
1 ATAAAAATATAATAAATTATTT
97118209 ATAAAAAGTATAATAAATT
1 ATAAAAA-TATAATAAATT
97118228 TAAAAATCTA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
19 10 0.31
20 4 0.12
21 3 0.09
22 8 0.25
23 7 0.22
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (22 bp):
ATAAAAATATAATAAATTATTT
Found at i:97122979 original size:46 final size:46
Alignment explanation
Indices: 97122927--97123108 Score: 267
Period size: 46 Copynumber: 4.0 Consensus size: 46
97122917 AGTGTGCTCT
*
97122927 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
97122973 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
97123019 CTGATATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * *
97123065 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
97123109 TCACGTCAAA
Statistics
Matches: 125, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
45 1 0.01
46 124 0.99
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:97123414 original size:23 final size:25
Alignment explanation
Indices: 97123369--97123415 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
97123359 AATAAATATA
*
97123369 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
97123394 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
97123416 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:97130167 original size:2 final size:2
Alignment explanation
Indices: 97130160--97130191 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
97130150 ATTTCGGAAG
97130160 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
97130192 TACAATATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:97131078 original size:22 final size:21
Alignment explanation
Indices: 97131030--97131078 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
97131020 ATTATTCATG
97131030 GTCATTTTTTAATTATTTAAT
1 GTCATTTTTTAATTATTTAAT
* *
97131051 GACATTTTATTAATT-TTTCCAT
1 GTCATTTT-TTAATTATTT-AAT
97131073 GTCATT
1 GTCATT
97131079 GACATATAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.27, C:0.10, G:0.06, T:0.57
Consensus pattern (21 bp):
GTCATTTTTTAATTATTTAAT
Found at i:97140426 original size:46 final size:46
Alignment explanation
Indices: 97140369--97140550 Score: 222
Period size: 46 Copynumber: 4.0 Consensus size: 46
97140359 AGTGTGCTCT
* *
97140369 CTGATACGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
97140415 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAT
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
97140461 GTGATATGAAATAAATAAGACCATGGTTGAAGGATACCATGGCAAC
1 CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
* ** * * *
97140507 ATGGCA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGAGTAAGACCATGGTTGAAAGATACCATGGCA
97140551 TCATGTCAAA
Statistics
Matches: 118, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
45 1 0.01
46 117 0.99
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
CTGATATGAAATGAGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:97143628 original size:30 final size:29
Alignment explanation
Indices: 97143552--97143629 Score: 86
Period size: 28 Copynumber: 2.7 Consensus size: 29
97143542 GGTAATCTTG
* * *
97143552 ATATAATGTTAACTTGCGTGAGCAACTCTA
1 ATAT-ATGTTAACTTGTGTGAGCAACCCAA
*
97143582 ATA-ATGTCAACTTGTGTGAGCAACCCAA
1 ATATATGTTAACTTGTGTGAGCAACCCAA
*
97143610 ATATACTGTTAGCTTGTGTG
1 ATATA-TGTTAACTTGTGTG
97143630 TGCAGTTTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
28 24 0.60
29 1 0.03
30 15 0.38
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (29 bp):
ATATATGTTAACTTGTGTGAGCAACCCAA
Found at i:97146055 original size:46 final size:46
Alignment explanation
Indices: 97145893--97146067 Score: 153
Period size: 46 Copynumber: 3.7 Consensus size: 46
97145883 CACACAACAA
* *
97145893 GCTGACGCCATGTCCCAAACAGGTCTTACACTAGCT-T-GTATATCTCGAG
1 GCTGACG-CATGTCCCAAACATGTCTTACACTAGCTCTCGTA-A--T-GTG
* * *
97145942 GCTGATGCATGTCTCAGACATGTCTTACACTAGCTCTCGTCTCAATGT-
1 GCTGACGCATGTCCCAAACATGTCTTACACTAGCTCTCG--T-AATGTG
* * * *
97145990 -C-GATGCATCTCCCAGACATGTCTTACACTGGCTCTCGTAATGTG
1 GCTGACGCATGTCCCAAACATGTCTTACACTAGCTCTCGTAATGTG
*
97146034 GCTGACGCATGTCTCAAACATGTCTTACACTAGC
1 GCTGACGCATGTCCCAAACATGTCTTACACTAGC
97146068 ACACATATCA
Statistics
Matches: 105, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 1 0.01
46 59 0.56
47 1 0.01
48 25 0.24
49 8 0.08
50 2 0.02
52 2 0.02
53 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (46 bp):
GCTGACGCATGTCCCAAACATGTCTTACACTAGCTCTCGTAATGTG
Found at i:97147367 original size:41 final size:41
Alignment explanation
Indices: 97147310--97147392 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
97147300 CAAATTTAGC
97147310 AAATACTTAGTCTAAAATTGCATGTTGAAGGTAGGAATTAA
1 AAATACTTAGTCTAAAATTGCATGTTGAAGGTAGGAATTAA
97147351 AAATACTTAGTCTAAAATTGCATGTTGAAGGTAGGAATTAA
1 AAATACTTAGTCTAAAATTGCATGTTGAAGGTAGGAATTAA
97147392 A
1 A
97147393 TATGGTAGTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.42, C:0.07, G:0.19, T:0.31
Consensus pattern (41 bp):
AAATACTTAGTCTAAAATTGCATGTTGAAGGTAGGAATTAA
Found at i:97156339 original size:18 final size:18
Alignment explanation
Indices: 97156303--97156349 Score: 69
Period size: 18 Copynumber: 2.7 Consensus size: 18
97156293 TTTTCTTTCA
*
97156303 CTATAT-TATATATATAT
1 CTATATGTATATAAATAT
*
97156320 CTATATGTATGTAAATAT
1 CTATATGTATATAAATAT
97156338 CTATATGTATAT
1 CTATATGTATAT
97156350 GTATTGTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 6 0.23
18 20 0.77
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.49
Consensus pattern (18 bp):
CTATATGTATATAAATAT
Found at i:97156342 original size:24 final size:25
Alignment explanation
Indices: 97156310--97156359 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 25
97156300 TCACTATATT
97156310 ATATATATATCTATATGTA-TGTAA
1 ATATATATATCTATATGTATTGTAA
* *
97156334 ATATCTATATGTATATGTATTGTAA
1 ATATATATATCTATATGTATTGTAA
97156359 A
1 A
97156360 GTGGGAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 17 0.74
25 6 0.26
ACGTcount: A:0.40, C:0.04, G:0.10, T:0.46
Consensus pattern (25 bp):
ATATATATATCTATATGTATTGTAA
Found at i:97156682 original size:16 final size:15
Alignment explanation
Indices: 97156658--97156687 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
97156648 AAAAAGGAGA
97156658 TTTTTTTTTTTAAAT
1 TTTTTTTTTTTAAAT
97156673 TTTTTATTTTTTAAA
1 TTTTT-TTTTTTAAA
97156688 AAGGAAAAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTTTTTTTTAAAT
Found at i:97162385 original size:72 final size:72
Alignment explanation
Indices: 97162259--97162400 Score: 207
Period size: 72 Copynumber: 2.0 Consensus size: 72
97162249 TCTAATCATA
* * *
97162259 TTTAAGATCTTTGACTGAGTTAGTGTCATAAGTTAACCCCGTATCAATTCATCTAAAAAATGACT
1 TTTAAGATCTTTAACTGAGTTAGTGTCATAAATTAACCCCGTACCAATTCATCTAAAAAATGACT
97162324 TAATACG
66 TAATACG
* *
97162331 TTTAAGA-CATTTAACTGAGTTAGTGTTATAAATTAA-CCCGTACCAATTCAATCTAAGAAATGA
1 TTTAAGATC-TTTAACTGAGTTAGTGTCATAAATTAACCCCGTACCAATTC-ATCTAAAAAATGA
97162394 CTTAATA
64 CTTAATA
97162401 TGAATATTTT
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
71 13 0.21
72 50 0.79
ACGTcount: A:0.37, C:0.15, G:0.13, T:0.35
Consensus pattern (72 bp):
TTTAAGATCTTTAACTGAGTTAGTGTCATAAATTAACCCCGTACCAATTCATCTAAAAAATGACT
TAATACG
Found at i:97164849 original size:3 final size:3
Alignment explanation
Indices: 97164828--97164863 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
97164818 AATTAAAAAG
* *
97164828 ATA ATA ACA ATA ATG ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
97164864 GGACTAGATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:97166436 original size:16 final size:17
Alignment explanation
Indices: 97166397--97166437 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
97166387 ATTATAAAAA
97166397 TATAATTTTATTATTTT
1 TATAATTTTATTATTTT
*
97166414 AAT-ATTTTA-TATTTT
1 TATAATTTTATTATTTT
97166429 TATAATTTT
1 TATAATTTT
97166438 TAAAATATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 8 0.38
16 11 0.52
17 2 0.10
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TATAATTTTATTATTTT
Found at i:97166468 original size:46 final size:46
Alignment explanation
Indices: 97166378--97166466 Score: 128
Period size: 46 Copynumber: 2.0 Consensus size: 46
97166368 TTAAATTGTA
*
97166378 ATTTTTATAATTATAAAAATATAATTTTATTATTTTAATATTTTAT
1 ATTTTTATAATTATAAAAATATAATTTAATTATTTTAATATTTTAT
* *
97166424 ATTTTTATAATTTTTAAAATATTAATTTAATT-TTTT-ATATTTT
1 ATTTTTATAATTATAAAAATA-TAATTTAATTATTTTAATATTTT
97166467 TAGGGGAGTT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
45 7 0.18
46 23 0.59
47 9 0.23
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (46 bp):
ATTTTTATAATTATAAAAATATAATTTAATTATTTTAATATTTTAT
Found at i:97167092 original size:19 final size:19
Alignment explanation
Indices: 97167068--97167105 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
97167058 GTATAAGTTA
97167068 AAAATTCTGATAAACATTT
1 AAAATTCTGATAAACATTT
* *
97167087 AAAATTTTGATAGACATTT
1 AAAATTCTGATAAACATTT
97167106 TGATATCTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.45, C:0.08, G:0.08, T:0.39
Consensus pattern (19 bp):
AAAATTCTGATAAACATTT
Found at i:97173660 original size:19 final size:19
Alignment explanation
Indices: 97173615--97173682 Score: 109
Period size: 19 Copynumber: 3.5 Consensus size: 19
97173605 TTAGCTCTTA
*
97173615 CGAGCTTCTGTTCAGCTCTCA
1 CGAGCTTCTGTTCAGCT-T-T
97173636 CGAGCTTCTGTTCAGCTTT
1 CGAGCTTCTGTTCAGCTTT
97173655 CGAGCTTCTGTTCAGCTTT
1 CGAGCTTCTGTTCAGCTTT
97173674 CGAGCTTCT
1 CGAGCTTCT
97173683 ATTGACGATG
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
19 28 0.61
20 1 0.02
21 17 0.37
ACGTcount: A:0.12, C:0.29, G:0.21, T:0.38
Consensus pattern (19 bp):
CGAGCTTCTGTTCAGCTTT
Found at i:97177646 original size:20 final size:20
Alignment explanation
Indices: 97177614--97177651 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
97177604 TGTTTCACAT
97177614 TCATATAACTAATATTTATA
1 TCATATAACTAATATTTATA
*
97177634 TCAT-TAACATAATTTTTA
1 TCATATAAC-TAATATTTA
97177652 ACTTAATAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.42, C:0.11, G:0.00, T:0.47
Consensus pattern (20 bp):
TCATATAACTAATATTTATA
Found at i:97177665 original size:24 final size:24
Alignment explanation
Indices: 97177638--97177692 Score: 92
Period size: 24 Copynumber: 2.3 Consensus size: 24
97177628 TTTATATCAT
97177638 TAACATAATTTTTAACTTAATAAC
1 TAACATAATTTTTAACTTAATAAC
*
97177662 TAACACAATTTTTAACTTAATAAC
1 TAACATAATTTTTAACTTAATAAC
*
97177686 TATCATA
1 TAACATA
97177693 GCATCATTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.40
Consensus pattern (24 bp):
TAACATAATTTTTAACTTAATAAC
Found at i:97179224 original size:46 final size:46
Alignment explanation
Indices: 97179172--97179347 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
97179162 TGGTTAAGCA
97179172 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
97179218 TTCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* * *
97179263 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
97179311 CCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGG
97179348 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:97179328 original size:93 final size:93
Alignment explanation
Indices: 97179169--97179339 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
97179159 GGATGGTTAA
* ** *
97179169 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
97179234 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
97179262 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
97179327 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
97179340 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:97181577 original size:18 final size:18
Alignment explanation
Indices: 97181554--97181594 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
97181544 TACTTTTCTC
97181554 TTTCTA-TCACAATTCCAA
1 TTTCTATTCACAATT-CAA
*
97181572 TTTCTATTCATAATTCAA
1 TTTCTATTCACAATTCAA
97181590 TTTCT
1 TTTCT
97181595 TCTTCTTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.29, C:0.22, G:0.00, T:0.49
Consensus pattern (18 bp):
TTTCTATTCACAATTCAA
Found at i:97182767 original size:12 final size:12
Alignment explanation
Indices: 97182752--97182782 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
97182742 TTCTCTTTTA
97182752 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
97182764 TTTTTCTTTCTC
1 TTTTTCTTTCCC
97182776 TTTTTCT
1 TTTTTCT
97182783 CCCCTGCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:97182958 original size:24 final size:22
Alignment explanation
Indices: 97182924--97182994 Score: 65
Period size: 23 Copynumber: 3.1 Consensus size: 22
97182914 ATTTACATAT
*
97182924 TTTACAATTGTACACTTATTTAA
1 TTTACATTTGTACA-TTATTTAA
* *
97182947 TTCTACATTTGTACCAATAATTTTA
1 TT-TACATTTGTA-C-ATTATTTAA
97182972 -TTACATTTGT-CATTATTTAA
1 TTTACATTTGTACATTATTTAA
97182992 TTT
1 TTT
97182995 GTTTCTCAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
20 7 0.18
21 3 0.08
23 11 0.28
24 10 0.26
25 7 0.18
26 1 0.03
ACGTcount: A:0.31, C:0.13, G:0.04, T:0.52
Consensus pattern (22 bp):
TTTACATTTGTACATTATTTAA
Found at i:97184112 original size:21 final size:21
Alignment explanation
Indices: 97184086--97184129 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
97184076 TTAGTTAAAT
*
97184086 GGGCGTGTGGAGT-AGCCACAC
1 GGGCGTATGGAGTAAG-CACAC
*
97184107 GGGCGTATGGGGTAAGCACAC
1 GGGCGTATGGAGTAAGCACAC
97184128 GG
1 GG
97184130 CTATGTTCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.20, C:0.20, G:0.45, T:0.14
Consensus pattern (21 bp):
GGGCGTATGGAGTAAGCACAC
Found at i:97184870 original size:15 final size:15
Alignment explanation
Indices: 97184850--97184880 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
97184840 ATAGCCTCTT
97184850 GCTATCCTATAAATA
1 GCTATCCTATAAATA
97184865 GCTATCCTATAAATA
1 GCTATCCTATAAATA
97184880 G
1 G
97184881 GAGAATAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (15 bp):
GCTATCCTATAAATA
Found at i:97185162 original size:27 final size:27
Alignment explanation
Indices: 97185131--97185190 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
97185121 AGTGATATAT
*
97185131 AATAAATAATAAAATGTATAGT-TTGAA
1 AATAAATAATAAAATGTATAATATT-AA
* *
97185158 AATAATTAATAATATGTATAATATTAA
1 AATAAATAATAAAATGTATAATATTAA
97185185 AATAAA
1 AATAAA
97185191 AAATTAGATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 26 0.93
28 2 0.07
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.35
Consensus pattern (27 bp):
AATAAATAATAAAATGTATAATATTAA
Found at i:97193695 original size:6 final size:6
Alignment explanation
Indices: 97193684--97193712 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
97193674 ACGGGGGCGG
97193684 TGGTGA TGGTGA TGGTGA TGGTGA TGGTG
1 TGGTGA TGGTGA TGGTGA TGGTGA TGGTG
97193713 GTGAAGAGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.14, C:0.00, G:0.52, T:0.34
Consensus pattern (6 bp):
TGGTGA
Found at i:97194202 original size:123 final size:123
Alignment explanation
Indices: 97193939--97194187 Score: 315
Period size: 123 Copynumber: 2.0 Consensus size: 123
97193929 TGGCTATTTA
* * * * * * * *
97193939 AACTT-AAAAAGTTA-TAAAATGATAACTAAATTATTTAAAAAATTTTATTTAAATTATTAAACT
1 AACTTCAAAAAGTTACAAAAATAATTATTAAATTATTCAAAAAAATTTATTTAAATCACTAAACT
* *
97194002 GTTAAAATTGTTGTTGTATAGCCTTCTCTATCTCCAAAAAGTTAAAATCATTGTTTGT
66 GTTAAAATTATTATTGTATAGCCTTCTCTATCTCCAAAAAGTTAAAATCATTGTTTGT
* ***
97194060 AACTTCAAAAAGTTACAAAAATAATTATTAAATTATTCAAAAAAATTTATTTAAGTCACTAGGTT
1 AACTTCAAAAAGTTACAAAAATAATTATTAAATTATTCAAAAAAATTTATTTAAATCACTAAACT
* * *
97194125 GTTAAAATTATTATTGTATAGCCTTCTCTGT-TCGCAGAAAGTTAAAATCGTTGTTTGT
66 GTTAAAATTATTATTGTATAGCCTTCTCTATCTC-CAAAAAGTTAAAATCATTGTTTGT
97194183 AACTT
1 AACTT
97194188 TTTGAAGTTA
Statistics
Matches: 108, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
121 5 0.05
122 11 0.10
123 92 0.85
ACGTcount: A:0.40, C:0.10, G:0.10, T:0.40
Consensus pattern (123 bp):
AACTTCAAAAAGTTACAAAAATAATTATTAAATTATTCAAAAAAATTTATTTAAATCACTAAACT
GTTAAAATTATTATTGTATAGCCTTCTCTATCTCCAAAAAGTTAAAATCATTGTTTGT
Found at i:97194277 original size:122 final size:123
Alignment explanation
Indices: 97194003--97194280 Score: 310
Period size: 123 Copynumber: 2.3 Consensus size: 123
97193993 TATTAAACTG
*
97194003 TTAAAATTGTTGTTGTATAGCCTTCTCTATCTC-CAAAAAGTTAAAATCATTGTTTGTAACTTCA
1 TTAAAATTGTTGTTGTATAGCCTTCTCTGT-TCGCAAAAAGTTAAAATCATTGTTTGTAACTTCA
* * * **
97194067 AAAAGTTACAAAAATAATTATTAAATTATTCAAAAAAATTTATTTAAGTCACTAGGTTG
65 AAAAGTTACAAAAATAATCACTAAACTATTCAAAAAAATTTATTTAAGTCACTAGGTCA
* * * * ***
97194126 TTAAAATTATTATTGTATAGCCTTCTCTGTTCGCAGAAAGTTAAAATCGTTGTTTGTAACTTTTT
1 TTAAAATTGTTGTTGTATAGCCTTCTCTGTTCGCAAAAAGTTAAAATCATTGTTTGTAACTTCAA
* ** * ** *
97194191 GAAGTTAC-AAAATTGTCACTAAACTATT-AGAAAGTTTTCATTTAAGTCATTAGGTCA
66 AAAGTTACAAAAATAATCACTAAACTATTCAAAAAAATTT-ATTTAAGTCACTAGGTCA
* * *
97194248 TTAAAATCGTTGTTGTATAGCATTTTCTGTTCG
1 TTAAAATTGTTGTTGTATAGCCTTCTCTGTTCG
97194281 TATCGTCTAC
Statistics
Matches: 128, Mismatches: 25, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
121 7 0.05
122 60 0.47
123 61 0.48
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.41
Consensus pattern (123 bp):
TTAAAATTGTTGTTGTATAGCCTTCTCTGTTCGCAAAAAGTTAAAATCATTGTTTGTAACTTCAA
AAAGTTACAAAAATAATCACTAAACTATTCAAAAAAATTTATTTAAGTCACTAGGTCA
Found at i:97204138 original size:51 final size:51
Alignment explanation
Indices: 97204083--97204196 Score: 138
Period size: 51 Copynumber: 2.2 Consensus size: 51
97204073 ATGTCACGAC
* * ***
97204083 CTAAATTTATTAAATCAAGAAAAAATTGATAGAATGTATAAATGTTGTTGG
1 CTAAATTTATTAAATAAAGAAAAAATTGATAAAATGTATAAATGTTGAAAG
* ** * *
97204134 CTAAATTTGTTAAATAAAGATCAAATTGATAAAATGTGTAAATTTTGAAAG
1 CTAAATTTATTAAATAAAGAAAAAATTGATAAAATGTATAAATGTTGAAAG
97204185 CTAAATTTATTA
1 CTAAATTTATTA
97204197 TTATACCTAA
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.46, C:0.04, G:0.13, T:0.37
Consensus pattern (51 bp):
CTAAATTTATTAAATAAAGAAAAAATTGATAAAATGTATAAATGTTGAAAG
Found at i:97213927 original size:37 final size:37
Alignment explanation
Indices: 97213886--97213967 Score: 128
Period size: 37 Copynumber: 2.2 Consensus size: 37
97213876 AAATATTTAT
* * *
97213886 TAATCAATGTTCAAACTTTGAACATGCTTTATTAAAC
1 TAATCAATGCTAAAACTTTGAACATGCTTTAATAAAC
*
97213923 TAATCAATGCTAAAACTTTGAACATGCTTTAATGAAC
1 TAATCAATGCTAAAACTTTGAACATGCTTTAATAAAC
97213960 TAATCAAT
1 TAATCAAT
97213968 ACTTAACAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.40, C:0.16, G:0.09, T:0.35
Consensus pattern (37 bp):
TAATCAATGCTAAAACTTTGAACATGCTTTAATAAAC
Found at i:97214039 original size:33 final size:33
Alignment explanation
Indices: 97214002--97214077 Score: 143
Period size: 33 Copynumber: 2.3 Consensus size: 33
97213992 TTAAAACTTG
*
97214002 AATTATACATATACCAACAATTAATTTTAGGTC
1 AATTATACATACACCAACAATTAATTTTAGGTC
97214035 AATTATACATACACCAACAATTAATTTTAGGTC
1 AATTATACATACACCAACAATTAATTTTAGGTC
97214068 AATTATACAT
1 AATTATACAT
97214078 GCTTTATAAT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.36
Consensus pattern (33 bp):
AATTATACATACACCAACAATTAATTTTAGGTC
Found at i:97217631 original size:121 final size:120
Alignment explanation
Indices: 97217098--97218201 Score: 1966
Period size: 120 Copynumber: 9.2 Consensus size: 120
97217088 TTTTCAAGTT
*
97217098 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* *
97217163 TAATATAAGAATATTAATTATTAAGAATTT-TTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
* *
97217217 ATACATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* ** *
97217282 TAATATAAGAACATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
*
97217337 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* * *
97217402 TAATATAAGAACATTAATTATTAAGAATTT-TTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
97217456 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
97217521 TAATATAAGAATATT-ATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAAT--TATTAAGAATTTCATTAAATTATATATTTTAATTAAA
97217577 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
97217642 TAATATAAGAATATT-ATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAAT--TATTAAGAATTTCATTAAATTATATATTTTAATTAAA
97217698 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
97217763 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
97217818 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
97217883 TAATATAAGAATATT-ATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAAT--TATTAAGAATTTCATTAAATTATATATTTTAATTAAA
97217939 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
97218004 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
97218059 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
97218124 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
97218179 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
97218202 TAAATATGAT
Statistics
Matches: 965, Mismatches: 12, Indels: 15
0.97 0.01 0.02
Matches are distributed among these distances:
118 2 0.00
119 197 0.20
120 423 0.44
121 339 0.35
122 4 0.00
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (120 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
Found at i:97217844 original size:241 final size:239
Alignment explanation
Indices: 97217098--97218201 Score: 1962
Period size: 241 Copynumber: 4.6 Consensus size: 239
97217088 TTTTCAAGTT
*
97217098 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* * *
97217163 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATACATTTAAT
66 TAATATAAGAATATTAATTATTAAGAATTTATTAAATTATATATTTTAATTAAAATATATTTAAT
*
97217228 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
131 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAA
* ** *
97217293 CATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAA
196 TATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
*
97217337 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* * *
97217402 TAATATAAGAACATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
66 TAATATAAGAATATTAATTATTAAGAATTTATTAAATTATATATTTTAATTAAAATATATTTAAT
97217467 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAA
131 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAA
*
97217532 TATT-ATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAA
196 TATTAAT--TATTAAGAATTTCATTAAATTATATATTTTAATTAAA
97217577 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
97217642 TAATATAAGAATATT-ATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTT
66 TAATATAAGAATATTAAT--TATTAAGAATTT-ATTAAATTATATATTTTAATTAAAATATATTT
97217706 AATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAA
128 AATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAA
97217771 GAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
193 GAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
97217818 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
97217883 TAATATAAGAATATT-ATCCAATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTT
66 TAATATAAGAATATTAAT--TATTAAGAATTT-ATTAAATTATATATTTTAATTAAAATATATTT
97217947 AATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAA
128 AATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAA
97218012 GAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
193 GAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
97218059 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
97218124 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAA
66 TAATATAAGAATATTAATTATTAAGAA-TTTATTAAATTATATATTTTAATTAAAATATATTTAA
97218189 TAATAATTATGTT
130 TAATAATTATGTT
97218202 TAAATATGAT
Statistics
Matches: 842, Mismatches: 15, Indels: 15
0.97 0.02 0.02
Matches are distributed among these distances:
238 2 0.00
239 197 0.23
240 166 0.20
241 371 0.44
242 104 0.12
243 2 0.00
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.47
Consensus pattern (239 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTATTAAATTATATATTTTAATTAAAATATATTTAAT
AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAA
TATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
Found at i:97218178 original size:18 final size:17
Alignment explanation
Indices: 97218150--97218184 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
97218140 ATTATTAAGA
*
97218150 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
97218167 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
97218185 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:97218414 original size:44 final size:45
Alignment explanation
Indices: 97218349--97218439 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
97218339 ACCTCTATTC
* * *
97218349 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
97218393 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
97218438 CA
1 CA
97218440 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:97218441 original size:16 final size:16
Alignment explanation
Indices: 97218420--97218488 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
97218410 GATTAGCTAT
97218420 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
97218436 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
97218453 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
97218469 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
97218485 TACA
1 TACA
97218489 GCGAACTAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:97218462 original size:33 final size:32
Alignment explanation
Indices: 97218420--97218488 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
97218410 GATTAGCTAT
97218420 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
97218453 TACACCTCTAATCCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
97218485 TACA
1 TACA
97218489 GCGAACTAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:97226440 original size:13 final size:13
Alignment explanation
Indices: 97226422--97226446 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97226412 TTTAATAATA
97226422 AAATAAAGAAATG
1 AAATAAAGAAATG
97226435 AAATAAAGAAAT
1 AAATAAAGAAAT
97226447 AAAGGAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (13 bp):
AAATAAAGAAATG
Found at i:97226469 original size:10 final size:9
Alignment explanation
Indices: 97226418--97226473 Score: 60
Period size: 9 Copynumber: 6.2 Consensus size: 9
97226408 ATAGTTTAAT
*
97226418 AATAAAATA
1 AATAAAAGA
* *
97226427 AAGAAATGA
1 AATAAAAGA
97226436 AAT-AAAGA
1 AATAAAAGA
*
97226444 AATAAAGGA
1 AATAAAAGA
97226453 AATAAAAGA
1 AATAAAAGA
97226462 AATGAAAAGA
1 AAT-AAAAGA
97226472 AA
1 AA
97226474 AACAAAGCAA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
8 7 0.18
9 23 0.61
10 8 0.21
ACGTcount: A:0.73, C:0.00, G:0.14, T:0.12
Consensus pattern (9 bp):
AATAAAAGA
Found at i:97227753 original size:15 final size:15
Alignment explanation
Indices: 97227730--97227777 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
97227720 TATCAAATTT
97227730 ATATTGATTGAAATC
1 ATATTGATTGAAATC
* * *
97227745 ATTTTGATTGAATTT
1 ATATTGATTGAAATC
97227760 ATATTGATTGAAAT-
1 ATATTGATTGAAATC
97227774 ATAT
1 ATAT
97227778 ATTATATATA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 4 0.14
15 24 0.86
ACGTcount: A:0.38, C:0.02, G:0.12, T:0.48
Consensus pattern (15 bp):
ATATTGATTGAAATC
Found at i:97228304 original size:23 final size:23
Alignment explanation
Indices: 97228277--97228328 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
97228267 TCCGGGTGTA
97228277 TTTGGGTTGGATATTCTGGTATG
1 TTTGGGTTGGATATTCTGGTATG
*
97228300 TTTGGGTTGGATATTCTGGTGTG
1 TTTGGGTTGGATATTCTGGTATG
97228323 TTTGGG
1 TTTGGG
97228329 AGGAATCCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.10, C:0.04, G:0.38, T:0.48
Consensus pattern (23 bp):
TTTGGGTTGGATATTCTGGTATG
Found at i:97228459 original size:18 final size:18
Alignment explanation
Indices: 97228396--97228466 Score: 56
Period size: 18 Copynumber: 3.9 Consensus size: 18
97228386 TGAAAAGATC
97228396 GACTGTTACTGAATAATTT
1 GACTGTTACTGAATAA-TT
* *
97228415 AATTGTTACT--ATATATCT
1 GACTGTTACTGAATA-AT-T
* *
97228433 GATTTTTACTGAATAATT
1 GACTGTTACTGAATAATT
*
97228451 GACTGTTACTGGATAA
1 GACTGTTACTGAATAA
97228467 CCGATCAGTT
Statistics
Matches: 41, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
17 4 0.10
18 24 0.59
19 10 0.24
20 3 0.07
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.44
Consensus pattern (18 bp):
GACTGTTACTGAATAATT
Found at i:97234374 original size:133 final size:133
Alignment explanation
Indices: 97234209--97234914 Score: 1133
Period size: 133 Copynumber: 5.3 Consensus size: 133
97234199 TACAGATATC
* * *
97234209 ATCAGCCTTATCTTCACTGAGTAAGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCGCTGAGT
1 ATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCGCTGAGC
*
97234274 AGGAGTGGAGCAGATCAAATTTTGGTGAATCTTATCTCCACGTACCGGCGATGGAGCAGATTCCA
66 AGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCACGTACCGGCGATGGAGCAGATTCCA
97234339 ATT
131 ATT
* *
97234342 ATCAGCCTTATCTTTACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATATTCGCTGAGC
1 ATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCGCTGAGC
* ** *
97234407 AGAAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCACGTACCGGCGATAAAGTAGATTCCA
66 AGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCACGTACCGGCGATGGAGCAGATTCCA
97234472 ATT
131 ATT
* *
97234475 ATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAAATTTTATCTTCGCTGAGC
1 ATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCGCTGAGC
97234540 AGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCACGTACCGGCGATGGAGCAGATTCCA
66 AGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCACGTACCGGCGATGGAGCAGATTCCA
97234605 ATT
131 ATT
* * *
97234608 ATCAACCTTATCTTCACTGAGCAGGAGTGGAACAGGCTAAATACCAGATCTTATATTCGCTGAGC
1 ATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCGCTGAGC
*
97234673 AGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCACGTACCGACGATGGAGCAGATTCCA
66 AGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCACGTACCGGCGATGGAGCAGATTCCA
97234738 ATT
131 ATT
* * * *
97234741 ATCAGCCTTATCTTCACCGAGTAGGAGTGGAGCAGGCTAAATACTAGATCTTATCTTCGCTGAGT
1 ATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCGCTGAGC
* * * *
97234806 AGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTCA
66 AGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCACGTACCGGCGATGGAGCAGATTCCA
***
97234871 GCC
131 ATT
* * * *
97234874 ACCAGCCTTATCTTCACTAAGTAGAAGTGGAGCAGGCTAAA
1 ATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAA
97234915 ATTTACAGAT
Statistics
Matches: 530, Mismatches: 43, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
133 530 1.00
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (133 bp):
ATCAGCCTTATCTTCACTGAGCAGGAGTGGAGCAGGCTAAATACCAGATCTTATCTTCGCTGAGC
AGGAGCGGAGCAGATCAAATTTTGGTGAATCTTATCTCCACGTACCGGCGATGGAGCAGATTCCA
ATT
Found at i:97234998 original size:85 final size:85
Alignment explanation
Indices: 97234906--97235100 Score: 315
Period size: 85 Copynumber: 2.3 Consensus size: 85
97234896 AGAAGTGGAG
* *
97234906 CAGGCTAAAATTTACAGATCCTGGCTCTCCGAGCAGTGGTGGAGCAGGTCGAAGA-TCCGCTTTA
1 CAGGCTAAAATTTACAGATCCTAGCTCTCCGAGCAGTGGTGGAGCAGGTCGAAGACT-CGCCTTA
97234970 A-CCCTCTAAGCAGTAGGGTAA
65 ATCCC-CTAAGCAGTAGGGTAA
*
97234991 CAGGCTAAAATTTACAGATCCTAGCTCTCCGAGTAGTGGTGGAGCAGGTCGAAGACTCGCCTTAA
1 CAGGCTAAAATTTACAGATCCTAGCTCTCCGAGCAGTGGTGGAGCAGGTCGAAGACTCGCCTTAA
97235056 TCCCCTAAGCAGTAGGGTAA
66 TCCCCTAAGCAGTAGGGTAA
*
97235076 CAGGCTAAAA-TTACAGATCTTAGCT
1 CAGGCTAAAATTTACAGATCCTAGCT
97235101 TAACAGAGCA
Statistics
Matches: 104, Mismatches: 4, Indels: 5
0.92 0.04 0.04
Matches are distributed among these distances:
84 14 0.13
85 86 0.83
86 4 0.04
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (85 bp):
CAGGCTAAAATTTACAGATCCTAGCTCTCCGAGCAGTGGTGGAGCAGGTCGAAGACTCGCCTTAA
TCCCCTAAGCAGTAGGGTAA
Found at i:97236826 original size:26 final size:28
Alignment explanation
Indices: 97236791--97236846 Score: 80
Period size: 26 Copynumber: 2.0 Consensus size: 28
97236781 TTTCCCATAT
*
97236791 TTATTTTTTTAAAA-TTCTTATA-TTTA
1 TTATTCTTTTAAAATTTCTTATAGTTTA
97236817 TTATTCTTTTAAAATTTTCTTATAGTTTA
1 TTATTCTTTTAAAA-TTTCTTATAGTTTA
97236846 T
1 T
97236847 GTAGTTATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 13 0.50
28 8 0.31
29 5 0.19
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (28 bp):
TTATTCTTTTAAAATTTCTTATAGTTTA
Found at i:97253585 original size:67 final size:68
Alignment explanation
Indices: 97253495--97253629 Score: 254
Period size: 67 Copynumber: 2.0 Consensus size: 68
97253485 TACAAGTATT
*
97253495 ATATTTGCAAGAAAGAAAAATAATAATTTATGCTATATACGTTCGAGGAATATCACTTTATAATC
1 ATATTTGCAAGAAAGAAAAATAATAATTTATGCTATATACGTTCGAGGAATACCACTTTATAATC
97253560 TTC
66 TTC
97253563 ATATTTGCAAGAAA-AAAAATAATAATTTATGCTATATACGTTCGAGGAATACCACTTTATAATC
1 ATATTTGCAAGAAAGAAAAATAATAATTTATGCTATATACGTTCGAGGAATACCACTTTATAATC
97253627 TTC
66 TTC
97253630 CCCTTAATTA
Statistics
Matches: 66, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
67 52 0.79
68 14 0.21
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.35
Consensus pattern (68 bp):
ATATTTGCAAGAAAGAAAAATAATAATTTATGCTATATACGTTCGAGGAATACCACTTTATAATC
TTC
Found at i:97262321 original size:103 final size:104
Alignment explanation
Indices: 97262200--97262408 Score: 411
Period size: 104 Copynumber: 2.0 Consensus size: 104
97262190 TCAAGTTCAA
97262200 ATACTAAAGTAGAC-AAAAAAAAAATACACAAATAAGCTAAATTTAGTTGCTTAAAAGCTACACC
1 ATACTAAAGTAGACAAAAAAAAAAATACACAAATAAGCTAAATTTAGTTGCTTAAAAGCTACACC
97262264 CAAATAAAAAAGTGCAAGTTTCTACATGGTCGACAATTG
66 CAAATAAAAAAGTGCAAGTTTCTACATGGTCGACAATTG
97262303 ATACTAAAGTAGACAAAAAAAAAAATACACAAATAAGCTAAATTTAGTTGCTTAAAAGCTACACC
1 ATACTAAAGTAGACAAAAAAAAAAATACACAAATAAGCTAAATTTAGTTGCTTAAAAGCTACACC
97262368 CAAATAAAAAAGTGCAAGTTTCTACATGGTCGACAATTG
66 CAAATAAAAAAGTGCAAGTTTCTACATGGTCGACAATTG
97262407 AT
1 AT
97262409 CAGTATGAAG
Statistics
Matches: 105, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
103 14 0.13
104 91 0.87
ACGTcount: A:0.49, C:0.15, G:0.12, T:0.23
Consensus pattern (104 bp):
ATACTAAAGTAGACAAAAAAAAAAATACACAAATAAGCTAAATTTAGTTGCTTAAAAGCTACACC
CAAATAAAAAAGTGCAAGTTTCTACATGGTCGACAATTG
Found at i:97270480 original size:24 final size:23
Alignment explanation
Indices: 97270440--97270499 Score: 63
Period size: 23 Copynumber: 2.7 Consensus size: 23
97270430 ACAATCATTC
97270440 AAAAGAAAAATAAAAATAAAAGT
1 AAAAGAAAAATAAAAATAAAAGT
* *
97270463 AAAAGGAAAATCAGAAATAAAA--
1 AAAAGAAAAAT-AAAAATAAAAGT
*
97270485 AATA-AAAAATAAAAA
1 AAAAGAAAAATAAAAA
97270500 ATATAAACAA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
20 4 0.13
21 5 0.16
22 3 0.10
23 10 0.32
24 9 0.29
ACGTcount: A:0.78, C:0.02, G:0.08, T:0.12
Consensus pattern (23 bp):
AAAAGAAAAATAAAAATAAAAGT
Found at i:97270487 original size:7 final size:7
Alignment explanation
Indices: 97270477--97270502 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
97270467 GGAAAATCAG
97270477 AAATAAA
1 AAATAAA
97270484 AAATAAA
1 AAATAAA
97270491 AAATAAA
1 AAATAAA
97270498 AAATA
1 AAATA
97270503 TAAACAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
AAATAAA
Found at i:97276266 original size:25 final size:26
Alignment explanation
Indices: 97276218--97276267 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
97276208 TTTACTAAAG
97276218 GATTAAAAAAAGTACAATTGAATTTA
1 GATTAAAAAAAGTACAATTGAATTTA
*
97276244 GATTATAAAAAA-TAC-ATTTAATTT
1 GATTA-AAAAAAGTACAATTGAATTT
97276268 TGTCAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 8 0.36
26 8 0.36
27 6 0.27
ACGTcount: A:0.52, C:0.04, G:0.08, T:0.36
Consensus pattern (26 bp):
GATTAAAAAAAGTACAATTGAATTTA
Found at i:97277762 original size:16 final size:17
Alignment explanation
Indices: 97277741--97277774 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
97277731 ATATAACATT
97277741 TATTC-TTTCAATTTAA
1 TATTCTTTTCAATTTAA
*
97277757 TATTCTTTTCACTTTAA
1 TATTCTTTTCAATTTAA
97277774 T
1 T
97277775 CCCAGGATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.26, C:0.15, G:0.00, T:0.59
Consensus pattern (17 bp):
TATTCTTTTCAATTTAA
Found at i:97293179 original size:44 final size:44
Alignment explanation
Indices: 97292963--97293590 Score: 429
Period size: 44 Copynumber: 14.5 Consensus size: 44
97292953 ACATATCCTA
* * *
97292963 TCTTCCTATATTGGTAGGAAGTAGATCAAAG-ATGCGGATCTTG
1 TCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGATCTTG
* * *
97293006 TCTTCCCATA--GGTGGCGAAGTAGATC-ACAGAAAGTAGATCTTG
1 TCTTCCTATATTGGTAG-GAAGTAGATCGA-AGAAAGCAGATCTTG
* * * * *
97293049 TCTT-C-ATGATTGG-CGTGAAGTAGATCAAAGATAGTAGGTCTTG
1 TCTTCCTAT-ATTGGTAG-GAAGTAGATCGAAGAAAGCAGATCTTG
* *
97293092 TCTTCCTATATTGGTAGGAAG--GATCGACG-ATGCAGATCTTG
1 TCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGATCTTG
* *
97293133 TCTTCCCATATTGGT-GCGAAGTAGATCGCAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAAGCAGATCTTG
* * * * * * *
97293177 TCTTCATGTATTGG-CGTGAAGTAGATCAAAGATAGTAGGTCTTG
1 TCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAAGCAGATCTTG
* * * *
97293221 TCTTCCTATATTGGTAGGGAGTGGATCGACG-ATGCAGATCTTG
1 TCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGATCTTG
* * * * *
97293264 TCTTCCCATATTTGTGGCGAAATAGATCGCAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAAGCAGATCTTG
* * * * * **
97293309 TCTTCATGTATTGGCGT-GGAAGTAGATCAAAGATAA-TAGGTCCGG
1 TCTTCCTATATT-G-GTAGGAAGTAGATCGAAGA-AAGCAGATCTTG
* * * *
97293354 TCTTCCTATATTGGTAGGAAGTGGATCGACG-ATGCAGATTTTG
1 TCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGATCTTG
* * *
97293397 TCTTCCCATAATGGTGGCGAAGTAGATC-AAGAAAGCAGATCTTG
1 TCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAAGCAGATCTTG
* * * * * * *
97293441 TCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGGTCCTA
1 TCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAAGCAGATCTTG
* * **
97293485 TCTTCCTATA-TGGTAGGAAGTGGATCGACG-GCGCAGATCTTG
1 TCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGATCTTG
* * * *
97293527 TCTTCATGTATTGG-CGCGAAGTAGATC-AAGATAGCAGATC-TG
1 TCTTCCTATATTGGTAG-GAAGTAGATCGAAGAAAGCAGATCTTG
*
97293569 CCTTCCTATATTGGTAGGAAGT
1 TCTTCCTATATTGGTAGGAAGT
97293591 GGATTGAAAA
Statistics
Matches: 445, Mismatches: 109, Indels: 63
0.72 0.18 0.10
Matches are distributed among these distances:
40 1 0.00
41 33 0.07
42 57 0.13
43 146 0.33
44 152 0.34
45 51 0.11
46 3 0.01
47 2 0.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (44 bp):
TCTTCCTATATTGGTAGGAAGTAGATCGAAGAAAGCAGATCTTG
Found at i:97293377 original size:133 final size:132
Alignment explanation
Indices: 97292958--97293567 Score: 889
Period size: 129 Copynumber: 4.7 Consensus size: 132
97292948 AAAGAACATA
* * * * *
97292958 TCCTATCTTCCTATATTGGTAGGAAGTAGATCAAAGATGCGGATCTTGTCTTCCCATA--GGTGG
1 TCCTGTCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGG
* *
97293021 CGAAGTAGATCACAGAAAGTAGATCTTGTCTTCATG-ATTGGCGTGAAGTAGATCAAAGATAGTA
66 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTA
97293085 GG
131 GG
*
97293087 TCTTGTCTTCCTATATTGGTAGGAA--GGATCGACGATGCAGATCTTGTCTTCCCATATTGGT-G
1 TCCTGTCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGG
97293149 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTA
66 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTA
97293214 GG
131 GG
* * *
97293216 TCTTGTCTTCCTATATTGGTAGGGAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTTGTGG
1 TCCTGTCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGG
* *
97293281 CGAAATAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGGAAGTAGATCAAAGATAAT
66 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGT-GAAGTAGATCAAAGATAGT
97293346 AGG
130 AGG
* * *
97293349 TCCGGTCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATTTTGTCTTCCCATAATGGTGG
1 TCCTGTCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGG
* * *
97293414 CGAAGTAGATC-AAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCA
66 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTA
97293478 GG
131 GG
* ** *** *
97293480 TCCTATCTTCCTATA-TGGTAGGAAGTGGATCGACGGCGCAGATCTTGTCTTCATGTATTGG-CG
1 TCCTGTCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGG
* *
97293543 CGAAGTAGATC-AAGATAGCAGATCT
66 CGAAGTAGATCGCAGAAAGCAGATCT
97293568 GCCTTCCTAT
Statistics
Matches: 440, Mismatches: 34, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
127 27 0.06
128 35 0.08
129 105 0.24
130 39 0.09
131 67 0.15
132 77 0.17
133 90 0.20
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (132 bp):
TCCTGTCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGG
CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTA
GG
Found at i:97293434 original size:264 final size:258
Alignment explanation
Indices: 97292958--97293531 Score: 882
Period size: 264 Copynumber: 2.2 Consensus size: 258
97292948 AAAGAACATA
* * * *
97292958 TCCTATCTTCCTATATTGGTAGGAAGTAGATCAAAGATGCGGATCTTGTCTTCCCATAGGTGGCG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATAGGTGGCG
* * *
97293023 AAGTAGATCACAGAAAGTAGATCTTGTCTTCATGATTGGCGTGAAGTAGATCAAAGATAGTAGGT
66 AAATAGATCACAGAAAGCAGATCTTGTCTTCATGATTGGCGTGAAGTAGATCAAAGATAATAGGT
** *
97293088 CTTGTCTTCCTATATTGGTAGGAAGGATCGACGATGCAGATCTTGTCTTCCCATATTGGTGCGAA
131 CCGGTCTTCCTATATTGGTAGGAAGGATCGACGATGCAGATCTTGTCTTCCCATAATGGTGCGAA
* *
97293153 GTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAGG
196 GTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGG
* * * *
97293216 TCTTGTCTTCCTATATTGGTAGGGAGTGGATCGACGATGCAGATCTTGTCTTCCCATATTTGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATA--GGTGG
*
97293281 CGAAATAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGGAAGTAGATCAAAGATAAT
64 CGAAATAGATCACAGAAAGCAGATCTTGTCTTCATG-ATTGGCGT-GAAGTAGATCAAAGATAAT
*
97293346 AGGTCCGGTCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATTTTGTCTTCCCATAATGG
127 AGGTCCGGTCTTCCTATATTGGTAGGAA--GGATCGACGATGCAGATCTTGTCTTCCCATAATGG
*
97293411 TGGCGAAGTAGATC-AAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATA
190 T-GCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATA
97293475 GCAGG
254 GCAGG
**
97293480 TCCTATCTTCCTATA-TGGTAGGAAGTGGATCGACGGCGCAGATCTTGTCTTC
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTC
97293532 ATGTATTGGC
Statistics
Matches: 285, Mismatches: 24, Indels: 9
0.90 0.08 0.03
Matches are distributed among these distances:
258 51 0.18
260 37 0.13
261 8 0.03
262 44 0.15
263 34 0.12
264 99 0.35
265 12 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (258 bp):
TCCTATCTTCCTATATTGGTAGGAAGTGGATCGACGATGCAGATCTTGTCTTCCCATAGGTGGCG
AAATAGATCACAGAAAGCAGATCTTGTCTTCATGATTGGCGTGAAGTAGATCAAAGATAATAGGT
CCGGTCTTCCTATATTGGTAGGAAGGATCGACGATGCAGATCTTGTCTTCCCATAATGGTGCGAA
GTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGG
Found at i:97296960 original size:30 final size:29
Alignment explanation
Indices: 97296926--97296997 Score: 74
Period size: 30 Copynumber: 2.4 Consensus size: 29
97296916 AAATTAATAC
97296926 ATGATAAAAATTACATTTTAA-CTTTTAAAA
1 ATGATAAAAATTA-A-TTTAATCTTTTAAAA
**
97296956 ATGATAAATTTTTAATTTAATCTTTTAAAA
1 ATGATAAA-AATTAATTTAATCTTTTAAAA
*
97296986 ATTTATAAAAAT
1 A-TGATAAAAAT
97296998 ATTAACTAGT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
29 5 0.15
30 20 0.59
31 9 0.26
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (29 bp):
ATGATAAAAATTAATTTAATCTTTTAAAA
Found at i:97299454 original size:44 final size:44
Alignment explanation
Indices: 97299404--97299489 Score: 118
Period size: 44 Copynumber: 2.0 Consensus size: 44
97299394 ATAATATATC
* * *
97299404 AAATACACTAAAAATATTAAAACAAGTGTTTCCCAACAAATTGA
1 AAATACACTAAAAACATTAAAACAAATGTTTACCAACAAATTGA
* * *
97299448 AAATACATTAAAAACATTGAAACAAATGTTTACCAGCAAATT
1 AAATACACTAAAAACATTAAAACAAATGTTTACCAACAAATT
97299490 TTAAAAAGAC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.52, C:0.15, G:0.07, T:0.26
Consensus pattern (44 bp):
AAATACACTAAAAACATTAAAACAAATGTTTACCAACAAATTGA
Found at i:97303023 original size:21 final size:20
Alignment explanation
Indices: 97302997--97303038 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
97302987 TTTTAAGGAA
* * *
97302997 TTAAAATATAATTTTATTAT
1 TTAAAAAATAAATTTAATAT
97303017 TTAAAAAATAAATTTAATAT
1 TTAAAAAATAAATTTAATAT
97303037 TT
1 TT
97303039 TGCATTTTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TTAAAAAATAAATTTAATAT
Found at i:97303028 original size:27 final size:26
Alignment explanation
Indices: 97302969--97303034 Score: 71
Period size: 27 Copynumber: 2.5 Consensus size: 26
97302959 TAAATAGATT
* *
97302969 AAATAAAATTTATTTTATTTTTAAGG
1 AAATAAAATTAATTTTATTTTTAAGA
*
97302995 AATTAAAATATAATTTTATTATTTAA-A
1 AAATAAAAT-TAATTTTATT-TTTAAGA
*
97303022 AAATAAATTTAAT
1 AAATAAAATTAAT
97303035 ATTTTGCATT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
26 12 0.36
27 16 0.48
28 5 0.15
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (26 bp):
AAATAAAATTAATTTTATTTTTAAGA
Found at i:97303920 original size:60 final size:60
Alignment explanation
Indices: 97303827--97303946 Score: 213
Period size: 60 Copynumber: 2.0 Consensus size: 60
97303817 GTTATATAGA
*
97303827 CAAAAAAATAGAATTAGATTAAATCAGAAACACGTGGATAGAATATAGCCTAGCCAAGGG
1 CAAAAAAATAGAATTAGATTAAATCAAAAACACGTGGATAGAATATAGCCTAGCCAAGGG
* *
97303887 CAAAAAAATCGAATTAGATTCAATCAAAAACACGTGGATAGAATATAGCCTAGCCAAGGG
1 CAAAAAAATAGAATTAGATTAAATCAAAAACACGTGGATAGAATATAGCCTAGCCAAGGG
97303947 GCAGACAAAG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.47, C:0.15, G:0.19, T:0.18
Consensus pattern (60 bp):
CAAAAAAATAGAATTAGATTAAATCAAAAACACGTGGATAGAATATAGCCTAGCCAAGGG
Found at i:97307571 original size:20 final size:20
Alignment explanation
Indices: 97307546--97307590 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
97307536 TTATCCAAAT
*
97307546 TAAAATATTAAAATTCAGGA
1 TAAAATATTAAAATTCAAGA
* * *
97307566 TAAAATCTTGAAATTTAAGA
1 TAAAATATTAAAATTCAAGA
97307586 TAAAA
1 TAAAA
97307591 ATACTGATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.56, C:0.04, G:0.09, T:0.31
Consensus pattern (20 bp):
TAAAATATTAAAATTCAAGA
Found at i:97313666 original size:9 final size:9
Alignment explanation
Indices: 97313652--97313728 Score: 84
Period size: 9 Copynumber: 8.6 Consensus size: 9
97313642 ATAAGTATAA
97313652 AATTAACCG
1 AATTAACCG
**
97313661 AATTAACTA
1 AATTAACCG
*
97313670 AATTAATCG
1 AATTAACCG
*
97313679 AATTAACTG
1 AATTAACCG
* *
97313688 AATTACCCA
1 AATTAACCG
97313697 AATTAACCG
1 AATTAACCG
97313706 AA-TATACCG
1 AATTA-ACCG
97313715 AATTAACCG
1 AATTAACCG
97313724 AATTA
1 AATTA
97313729 TTTGTATAAA
Statistics
Matches: 54, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
8 2 0.04
9 50 0.93
10 2 0.04
ACGTcount: A:0.47, C:0.18, G:0.08, T:0.27
Consensus pattern (9 bp):
AATTAACCG
Found at i:97313682 original size:27 final size:27
Alignment explanation
Indices: 97313652--97313728 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 27
97313642 ATAAGTATAA
* *
97313652 AATTAACCGAATTAACTAAATTAATCG
1 AATTAACCGAATTAACCAAATTAACCG
* *
97313679 AATTAACTGAATTACCCAAATTAACCG
1 AATTAACCGAATTAACCAAATTAACCG
*
97313706 AA-TATACCGAATTAACCGAATTA
1 AATTA-ACCGAATTAACCAAATTA
97313729 TTTGTATAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 2 0.05
27 40 0.95
ACGTcount: A:0.47, C:0.18, G:0.08, T:0.27
Consensus pattern (27 bp):
AATTAACCGAATTAACCAAATTAACCG
Found at i:97313764 original size:5 final size:6
Alignment explanation
Indices: 97313749--97313789 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
97313739 ATTATATGTT
*
97313749 TTTTTA TTTTTA TTTTTA GTTTTAGA TTTTTA TTTTTA TTT
1 TTTTTA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTT
97313790 ATTAAATTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 22 0.71
7 8 0.26
8 1 0.03
ACGTcount: A:0.17, C:0.00, G:0.05, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:97314655 original size:56 final size:55
Alignment explanation
Indices: 97314593--97314730 Score: 188
Period size: 58 Copynumber: 2.4 Consensus size: 55
97314583 TATTTCTCAT
97314593 ATACTTAAATTTAATATTACTTATTT-TATTTATTTATTTATTCTTTTACTTTTTAA
1 ATACTTAAATTTAATATTACTTATTTATATTTATTTA-TTATTCTTTTA-TTTTTAA
* *
97314649 ATACTTAAATTTAATATTATTTGTTTTGCATATTTATTTATTATTCTTTTATTTTTAA
1 ATACTTAAATTTAATATTACTT-ATTT--ATATTTATTTATTATTCTTTTATTTTTAA
* *
97314707 ATATTTAAATTTGATATTACTTAT
1 ATACTTAAATTTAATATTACTTAT
97314731 AATTCTCTTT
Statistics
Matches: 72, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
56 21 0.29
57 4 0.06
58 26 0.36
59 11 0.15
60 10 0.14
ACGTcount: A:0.31, C:0.06, G:0.02, T:0.61
Consensus pattern (55 bp):
ATACTTAAATTTAATATTACTTATTTATATTTATTTATTATTCTTTTATTTTTAA
Found at i:97314711 original size:29 final size:29
Alignment explanation
Indices: 97314619--97314713 Score: 86
Period size: 29 Copynumber: 3.2 Consensus size: 29
97314609 TTACTTATTT
97314619 TATTTATTTATTTATTCTTTTACTTTTTAAA
1 TATTTATTTA-TTATTCTTTTA-TTTTTAAA
* * * * **
97314650 TACTTAAATTTAATATT-ATTT-GTTTTGCA
1 TA-TT-TATTTATTATTCTTTTATTTTTAAA
97314679 TATTTATTTATTATTCTTTTATTTTTAAA
1 TATTTATTTATTATTCTTTTATTTTTAAA
97314708 TATTTA
1 TATTTA
97314714 AATTTGATAT
Statistics
Matches: 48, Mismatches: 12, Indels: 10
0.69 0.17 0.14
Matches are distributed among these distances:
27 9 0.19
28 5 0.10
29 18 0.38
31 5 0.10
32 6 0.12
33 5 0.10
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.64
Consensus pattern (29 bp):
TATTTATTTATTATTCTTTTATTTTTAAA
Found at i:97331534 original size:18 final size:18
Alignment explanation
Indices: 97331479--97331535 Score: 66
Period size: 17 Copynumber: 3.3 Consensus size: 18
97331469 TAAGTAACTT
97331479 AAACAAATATATT-TATA
1 AAACAAATATATTATATA
* *
97331496 AAA-AACTATTATTA-ATT
1 AAACAAATA-TATTATATA
97331513 AAACAAATATATTATATA
1 AAACAAATATATTATATA
97331531 AAACA
1 AAACA
97331536 GGGTAAATTA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
16 4 0.12
17 17 0.53
18 11 0.34
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (18 bp):
AAACAAATATATTATATA
Found at i:97344382 original size:24 final size:23
Alignment explanation
Indices: 97344355--97344400 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
97344345 TGATAGTAAA
97344355 ATACAAGTGTAATAAATCATATAC
1 ATACAAGTGTAATAAAT-ATATAC
* *
97344379 ATACAATTGTAATATATATATA
1 ATACAAGTGTAATAAATATATA
97344401 TTTATTTACT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.50, C:0.09, G:0.07, T:0.35
Consensus pattern (23 bp):
ATACAAGTGTAATAAATATATAC
Found at i:97344555 original size:11 final size:12
Alignment explanation
Indices: 97344526--97344568 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
97344516 AAAACAGGGG
97344526 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
97344538 AGAAAAAGGGAA
1 AGAAAAAGAGAA
*
97344550 AG-AAAAGAAAA
1 AGAAAAAGAGAA
97344561 AGGAAAAA
1 A-GAAAAA
97344569 TTAGAGATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
11 8 0.31
12 14 0.54
13 4 0.15
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:97344558 original size:17 final size:18
Alignment explanation
Indices: 97344530--97344563 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
97344520 CAGGGGAGAA
97344530 AAAGAGAAAGAAAAAGGG
1 AAAGAGAAAGAAAAAGGG
97344548 AAAGA-AAAGAAAAAGG
1 AAAGAGAAAGAAAAAGG
97344564 AAAAATTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (18 bp):
AAAGAGAAAGAAAAAGGG
Found at i:97348094 original size:131 final size:132
Alignment explanation
Indices: 97347953--97348204 Score: 355
Period size: 131 Copynumber: 1.9 Consensus size: 132
97347943 CGAGTATTAT
* * * *
97347953 CTTCGTTTTAATGGATTTTTAAAAGACCTGAGTGAAATTTTGAAG-GAATATTTGATTATTTTAA
1 CTTCGTTTTAAGGGATTTTTAAAAGACATGAGTGAAATTTTGAAGTG-ACATTCGATTATTTTAA
** *
97348017 ACAAACGGGAAATTGCAACCCAACACGTTAGGGCACAATTCCACGAGTTGCCAAATATCGCATAC
65 ACAAACACGAAATTGCAACCCAACACGTTAGGGCACAATTCCACGAATTGCCAAATATCGCATAC
97348082 CGC
130 CGC
* * * *
97348085 CTTCG-TTTAAGGGATTTTTAAAAGATATGAGTGATATTTTGAAGTGACATTCGATTATTTTGAG
1 CTTCGTTTTAAGGGATTTTTAAAAGACATGAGTGAAATTTTGAAGTGACATTCGATTATTTTAAA
* * *
97348149 CAAACACGAAATTGCAACCCAACACGTTAGGGCTCGATTCCGCGAATTGCCAAATA
66 CAAACACGAAATTGCAACCCAACACGTTAGGGCACAATTCCACGAATTGCCAAATA
97348205 CCAAATCTCA
Statistics
Matches: 105, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
131 99 0.94
132 6 0.06
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.30
Consensus pattern (132 bp):
CTTCGTTTTAAGGGATTTTTAAAAGACATGAGTGAAATTTTGAAGTGACATTCGATTATTTTAAA
CAAACACGAAATTGCAACCCAACACGTTAGGGCACAATTCCACGAATTGCCAAATATCGCATACC
GC
Found at i:97348219 original size:131 final size:131
Alignment explanation
Indices: 97347953--97348238 Score: 335
Period size: 131 Copynumber: 2.2 Consensus size: 131
97347943 CGAGTATTAT
* * * *
97347953 CTTCGTTTTAATGGATTTTTAAAAGACCTGAGTGAAATTTTGAAGGAATATTTGATTATTTTAAA
1 CTTCG-TTTAAAGGATTTTTAAAAGACATGAGTGAAATTTTGAAGGAACATTCGATTATTTTAAA
** * *
97348018 CAAACGGGAAATTGCAACCCAACACGTTAGGGCACAATTCCACGAGTTGCCAAATATCGCATACC
65 CAAACACGAAATTGCAACCCAACACGTTAGGGCACAATTCCACGAATTGCCAAATATCGCAAACC
*
97348083 GC
130 AC
* * * * *
97348085 CTTCGTTTAAGGGATTTTTAAAAGATATGAGTGATATTTTGAAGTG-ACATTCGATTATTTTGAG
1 CTTCGTTTAAAGGATTTTTAAAAGACATGAGTGAAATTTTGAAG-GAACATTCGATTATTTTAAA
* * *
97348149 CAAACACGAAATTGCAACCCAACACGTTAGGGCTCGATTCCGCGAATTGCCAAATA-C-CAAATC
65 CAAACACGAAATTGCAACCCAACACGTTAGGGCACAATTCCACGAATTGCCAAATATCGCAAA-C
97348212 TCAC
129 -CAC
* *
97348216 CTTCATTTTAAAGAATTTTTAAA
1 CTTC-GTTTAAAGGATTTTTAAA
97348239 TGAATGATTA
Statistics
Matches: 131, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
129 3 0.02
130 2 0.02
131 105 0.80
132 21 0.16
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (131 bp):
CTTCGTTTAAAGGATTTTTAAAAGACATGAGTGAAATTTTGAAGGAACATTCGATTATTTTAAAC
AAACACGAAATTGCAACCCAACACGTTAGGGCACAATTCCACGAATTGCCAAATATCGCAAACCA
C
Found at i:97351197 original size:47 final size:47
Alignment explanation
Indices: 97351100--97351210 Score: 127
Period size: 47 Copynumber: 2.4 Consensus size: 47
97351090 CCGGGATAAG
* * * *
97351100 CACATAGTGCTTCATCGGAATAAATCCGAAATTTTAACATTATAGTA
1 CACATAGTACTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
* * *
97351147 CACAAAGTACTTCATCGGAACAAATCTGAAACTTTAACAGTAGTCG-A
1 CACATAGTACTTCATCGGAACAAATCCGAAACTTTAACAGTA-TAGTA
97351194 CACATAGTA-TCTCATCG
1 CACATAGTACT-TCATCG
97351211 ACTCAATGTC
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
46 1 0.02
47 51 0.94
48 2 0.04
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.28
Consensus pattern (47 bp):
CACATAGTACTTCATCGGAACAAATCCGAAACTTTAACAGTATAGTA
Found at i:97353633 original size:16 final size:17
Alignment explanation
Indices: 97353602--97353634 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
97353592 CATAAGTATA
97353602 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
97353619 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
97353635 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:97353982 original size:46 final size:47
Alignment explanation
Indices: 97353930--97354277 Score: 469
Period size: 46 Copynumber: 7.6 Consensus size: 47
97353920 TGTCATAGTG
* *
97353930 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTTCATATCATGTTGCCATGGTA
* * **
97353976 TCTTTCAACCATGGTCTTATTC-TTTTCATGTCACATTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTTCATATCATGTTGCCATGGTA
* * *
97354022 TCTTTCAACCATGGTCTTATTCA-TTTCATGTCACGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTTCATATCATGTTGCCATGGTA
* *
97354068 TCTTTCAACCATGGTCTTATTCATTTTC-TATCATGTTGCCATAGTA
1 TCTTTCAACCATGGTCTTACTCATTTTCATATCATGTTGCCATGGTA
*
97354114 TCTTTCAACCATGGTCTTACACA-TTTCATATCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTTCATATCATGTTGCCATGGTA
* * * *
97354160 TCTTTCAATCATGATCTTACACA-TTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCATTTTCATATCATGTTGCCATGGTA
*
97354206 TCTTTCAACCATGGTCTTA-T-ATATTTCATATCAGGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACTCAT-TTTCATATCATGTTGCCATGGTA
*
97354252 TCTTTCAACCATGGTCTTACACATTT
1 TCTTTCAACCATGGTCTTACTCATTT
97354278 CATTTCAGAG
Statistics
Matches: 276, Mismatches: 18, Indels: 15
0.89 0.06 0.05
Matches are distributed among these distances:
44 1 0.00
45 9 0.03
46 258 0.93
47 6 0.02
48 2 0.01
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.42
Consensus pattern (47 bp):
TCTTTCAACCATGGTCTTACTCATTTTCATATCATGTTGCCATGGTA
Found at i:97357399 original size:42 final size:42
Alignment explanation
Indices: 97357335--97357448 Score: 165
Period size: 42 Copynumber: 2.7 Consensus size: 42
97357325 TTCGTTTTCT
** * * *
97357335 CGATGCCATAGTTCAACCATGGTCTTACACATCTTCACATAA
1 CGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAA
* *
97357377 TGATGCCATAGCCCAGCTATGGTCTTACACATATTCATATAA
1 CGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAA
97357419 CGATGCCATAGCCCAGCTATGGTCTTACAC
1 CGATGCCATAGCCCAGCTATGGTCTTACAC
97357449 GAATCACATA
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (42 bp):
CGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATAA
Found at i:97357520 original size:47 final size:46
Alignment explanation
Indices: 97357419--97357542 Score: 158
Period size: 47 Copynumber: 2.7 Consensus size: 46
97357409 ATTCATATAA
* * * * *
97357419 CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
* * * *
97357465 TGATGCCATATCCCAGATATGGTATTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
97357512 CGATGCCATATCCCAGATATGGTCTTATACG
1 CGATGCCATATCCCAGATATGGTCTTATACG
97357543 GAAATTACTT
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
46 26 0.39
47 40 0.61
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:97357602 original size:31 final size:31
Alignment explanation
Indices: 97357567--97357715 Score: 219
Period size: 31 Copynumber: 4.8 Consensus size: 31
97357557 CTTGTCACTT
*
97357567 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
97357598 GTAGCC-AGAGCTACCATTTTTCATTGATCAG
1 GTAGCCGA-AGCTACCACTTTTCACTGATCAG
* *
97357629 GTAGCTGGAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
97357660 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
97357691 GTAGCTGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
97357716 TGTCATTTGT
Statistics
Matches: 106, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
30 1 0.01
31 105 0.99
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:97357798 original size:62 final size:63
Alignment explanation
Indices: 97357706--97357829 Score: 223
Period size: 62 Copynumber: 2.0 Consensus size: 63
97357696 TGAAGCTACC
*
97357706 ACTTTTCACTTGTCATTTGTCATTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT
1 ACTTATCACTTGTCATTTGTCATTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT
*
97357769 ACTTATCACTT-TCATTTGTCCTTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTT
1 ACTTATCACTTGTCATTTGTCATTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTT
97357830 GTTGCCATGG
Statistics
Matches: 59, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
62 49 0.83
63 10 0.17
ACGTcount: A:0.26, C:0.22, G:0.14, T:0.39
Consensus pattern (63 bp):
ACTTATCACTTGTCATTTGTCATTGATCAGATAAGTGTAGCCGAAGCTATCACTTATCACTTT
Found at i:97362039 original size:105 final size:105
Alignment explanation
Indices: 97361857--97362061 Score: 392
Period size: 105 Copynumber: 2.0 Consensus size: 105
97361847 TCAGTTGATG
97361857 TACTCTTCAAGTCCTCAACCAACTTCTTAACCTTAGTTGCACGAGGCGGATAGACCTGATTTAAA
1 TACTCTTCAAGTCCTCAACCAACTTCTTAACCTTAGTTGCACGAGGCGGATAGACCTGATTTAAA
*
97361922 GTGGACTCCACGAGATCCGGCAACTTCACATTGTTGGATT
66 GTGGACTCCACGAGATCAGGCAACTTCACATTGTTGGATT
97361962 TACTCTTCAAGTCCTCAACCAACTTCTTAACCTTAGTTGCACGAGGCGGATAGACCTGATTTAAA
1 TACTCTTCAAGTCCTCAACCAACTTCTTAACCTTAGTTGCACGAGGCGGATAGACCTGATTTAAA
*
97362027 GTGGACTCCACGAGATTAGGCAACTTCACATTGTT
66 GTGGACTCCACGAGATCAGGCAACTTCACATTGTT
97362062 TGACTCGCAC
Statistics
Matches: 98, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
105 98 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (105 bp):
TACTCTTCAAGTCCTCAACCAACTTCTTAACCTTAGTTGCACGAGGCGGATAGACCTGATTTAAA
GTGGACTCCACGAGATCAGGCAACTTCACATTGTTGGATT
Found at i:97371342 original size:23 final size:22
Alignment explanation
Indices: 97371290--97371342 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
97371280 TCCACGTCTT
*
97371290 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
97371312 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
97371335 TTTCTTTT
1 TTTCTTTT
97371343 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:97375742 original size:23 final size:23
Alignment explanation
Indices: 97375712--97375758 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
97375702 AAACGCAATA
97375712 TAAGGTCTGGAGAAAGCTGGTTT
1 TAAGGTCTGGAGAAAGCTGGTTT
97375735 TAAGGTCTGGAGAAAGCTGGTTT
1 TAAGGTCTGGAGAAAGCTGGTTT
97375758 T
1 T
97375759 TCATATTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.09, G:0.34, T:0.32
Consensus pattern (23 bp):
TAAGGTCTGGAGAAAGCTGGTTT
Found at i:97376619 original size:40 final size:35
Alignment explanation
Indices: 97376549--97376676 Score: 123
Period size: 35 Copynumber: 3.5 Consensus size: 35
97376539 CATGACACAG
97376549 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
1 TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
*
97376584 TGTGAAATGTAGGTATGGTATTATCAAATCTATACTGAGT
1 TGTGAAATGTAGGTATGG---TATC--ATCCATACTGAGT
** * * * *
97376624 TAAGAAACGTAGGTATGGCAT-TTCCCATACCGAGT
1 TGTGAAATGTAGGTATGGTATCAT-CCATACTGAGT
*
97376659 TGTAAAATGTAGGTATGG
1 TGTGAAATGTAGGTATGG
97376677 CATTTCAATG
Statistics
Matches: 75, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
34 1 0.01
35 41 0.55
37 2 0.03
38 4 0.05
40 27 0.36
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATCATCCATACTGAGT
Found at i:97381953 original size:14 final size:14
Alignment explanation
Indices: 97381936--97381966 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
97381926 TTTTCTTTTG
*
97381936 TTTCTTTTATTTCA
1 TTTCTTTTATTTAA
97381950 TTTCTTTTATTTAA
1 TTTCTTTTATTTAA
97381964 TTT
1 TTT
97381967 ATAATATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.16, C:0.10, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTCTTTTATTTAA
Found at i:97385730 original size:50 final size:50
Alignment explanation
Indices: 97385654--97385753 Score: 137
Period size: 50 Copynumber: 2.0 Consensus size: 50
97385644 TGACTATCGC
* * * * * *
97385654 ACCATATTGTGTAAGACCATAGCTGGTGGGCTATGGCATCATATGGAAAG
1 ACCATATTGTATAAGACCACAACTGGTAGGCTATGACATAATATGGAAAG
*
97385704 ACCATATTGTATAAGACCACAACTGGTAGGTTATGACATAATATGGAAAG
1 ACCATATTGTATAAGACCACAACTGGTAGGCTATGACATAATATGGAAAG
97385754 GACTAAAGGA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (50 bp):
ACCATATTGTATAAGACCACAACTGGTAGGCTATGACATAATATGGAAAG
Found at i:97385898 original size:27 final size:27
Alignment explanation
Indices: 97385868--97385983 Score: 99
Period size: 27 Copynumber: 4.3 Consensus size: 27
97385858 CTAGAGATGA
*
97385868 AAGCCTTTGTAGAAATCTAACAAAAGG
1 AAGCCTTTGTAGAAATCTAAGAAAAGG
* * *
97385895 AAGCCTTTGTGGCAATCTAAAGAACA-G
1 AAGCCTTTGTAGAAATCT-AAGAAAAGG
* * * *
97385922 AAGTCTTTGTGGATATCTATGAAAAGG
1 AAGCCTTTGTAGAAATCTAAGAAAAGG
* ** *
97385949 AAGCATTTGTAGTGATCTATGAAAAGG
1 AAGCCTTTGTAGAAATCTAAGAAAAGG
97385976 AACGCCTT
1 AA-GCCTT
97385984 CATGGCATAT
Statistics
Matches: 71, Mismatches: 15, Indels: 5
0.78 0.16 0.05
Matches are distributed among these distances:
26 5 0.07
27 57 0.80
28 9 0.13
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.27
Consensus pattern (27 bp):
AAGCCTTTGTAGAAATCTAAGAAAAGG
Found at i:97386015 original size:26 final size:28
Alignment explanation
Indices: 97385980--97386031 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
97385970 AAAAGGAACG
97385980 CCTTCATGGC-ATATTCTAAAGAAAAAC
1 CCTTCATGGCAATATTCTAAAGAAAAAC
* *
97386007 CCTTC-TGGCAATCTTCTGAAGAAAA
1 CCTTCATGGCAATATTCTAAAGAAAA
97386032 TGGCTTTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.37, C:0.23, G:0.13, T:0.27
Consensus pattern (28 bp):
CCTTCATGGCAATATTCTAAAGAAAAAC
Found at i:97386403 original size:13 final size:13
Alignment explanation
Indices: 97386385--97386411 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
97386375 TAAGTATGTG
97386385 TCGTATTTACGAA
1 TCGTATTTACGAA
97386398 TCGTATTTACGAA
1 TCGTATTTACGAA
97386411 T
1 T
97386412 ACAATGGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TCGTATTTACGAA
Found at i:97389043 original size:128 final size:128
Alignment explanation
Indices: 97388809--97389160 Score: 379
Period size: 129 Copynumber: 2.7 Consensus size: 128
97388799 AATTTTGAAG
* * * *
97388809 GGATATTTGATTATTTTAAAC-AATCGGGAAATTGCTACCCAACACGTTAGGGCACGATCCCGCG
1 GGATATTTGATTATTTTGAACAAAT-GCGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCG
* * * * * * *
97388873 AATTGCCAAATATCACATATCGCCTTCGTTTTAGAGATTTTAAAAGACACGCAA-AA-TTTTAAA
65 AATTGCCAAACATCAAATATCACCTTCATTTAAGAGACTTTAAAA-ACACG-AAGAAGTTTCAAA
97388936 A
128 A
* * * *
97388937 TGATATTCGATTATTTTGAACAAATGCGAAATTGCAACCTAACACGTTAGGGCACAATTCCGCGA
1 GGATATTTGATTATTTTGAACAAATGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGA
* * * * * *
97389002 ATTGCCAAACATCAAATCTCATCTTCATTTAAG-GAACTTTAAAAATATGAATGAAGTTTCGAAG
66 ATTGCCAAACATCAAATATCACCTTCATTTAAGAG-ACTTTAAAAACACGAA-GAAGTTTCAAAA
* * *
97389066 GGAAATTTGATTATTTTGAGCAAATACGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGA
1 GGATATTTGATTATTTTGAACAAATGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGA
* * * *
97389131 ATCGCCGAACATCAAATTTCGCCTTCATTT
66 ATTGCCAAACATCAAATATCACCTTCATTT
97389161 TGAAGAATTT
Statistics
Matches: 186, Mismatches: 33, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
126 2 0.01
127 4 0.02
128 89 0.48
129 91 0.49
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (128 bp):
GGATATTTGATTATTTTGAACAAATGCGAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGA
ATTGCCAAACATCAAATATCACCTTCATTTAAGAGACTTTAAAAACACGAAGAAGTTTCAAAA
Found at i:97392303 original size:27 final size:27
Alignment explanation
Indices: 97392240--97392312 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 27
97392230 AGGCTAAACA
* * *
97392240 GTGGACTGTCCTACAAACACCTATTTT
1 GTGGACTGTCCCACAAACACCTATATG
** * *
97392267 ACGGAATGTCCCGCAAACACCTATATG
1 GTGGACTGTCCCACAAACACCTATATG
97392294 GTGGACTGTCCCACGAAAC
1 GTGGACTGTCCCAC-AAAC
97392313 TTATAATTCG
Statistics
Matches: 34, Mismatches: 11, Indels: 1
0.74 0.24 0.02
Matches are distributed among these distances:
27 30 0.88
28 4 0.12
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (27 bp):
GTGGACTGTCCCACAAACACCTATATG
Found at i:97392846 original size:30 final size:30
Alignment explanation
Indices: 97392789--97392846 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
97392779 AACAAACATC
* *
97392789 TATTCATGTTCATTTGTTTATTTTTAAGCT
1 TATTCATGTTCATTTGTGTATTATTAAGCT
*
97392819 TATTCGTGTTCAGTTTGTGT-TTATTAAG
1 TATTCATGTTCA-TTTGTGTATTATTAAG
97392847 AATTTTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 18 0.75
31 6 0.25
ACGTcount: A:0.19, C:0.09, G:0.16, T:0.57
Consensus pattern (30 bp):
TATTCATGTTCATTTGTGTATTATTAAGCT
Found at i:97395830 original size:3 final size:3
Alignment explanation
Indices: 97395824--97395848 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
97395814 TACAGTCCCG
97395824 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
97395849 TTTATAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:97399466 original size:29 final size:30
Alignment explanation
Indices: 97399421--97399485 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 30
97399411 ACAGATTTGG
*
97399421 AATTTAGTTCTTATACTT-TTATTTTCCAA
1 AATTTAGTTCTTATACTTCTCATTTTCCAA
* **
97399450 AATTTAG-TCTTTTTACTTCTCATTTTTTAA
1 AATTTAGTTC-TTATACTTCTCATTTTCCAA
97399480 AATTTA
1 AATTTA
97399486 AATCTAACTA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 2 0.07
29 14 0.47
30 14 0.47
ACGTcount: A:0.28, C:0.12, G:0.03, T:0.57
Consensus pattern (30 bp):
AATTTAGTTCTTATACTTCTCATTTTCCAA
Found at i:97399669 original size:23 final size:22
Alignment explanation
Indices: 97399643--97399690 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
97399633 AATTAAACCT
*
97399643 AAAATTTAAAACCTAAAAATAGA
1 AAAATTGAAAACCTAAAAATA-A
**
97399666 AAAATTGAATTCCTAAAAATAA
1 AAAATTGAAAACCTAAAAATAA
97399688 AAA
1 AAA
97399691 TGCACAAACT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 4 0.18
23 18 0.82
ACGTcount: A:0.65, C:0.08, G:0.04, T:0.23
Consensus pattern (22 bp):
AAAATTGAAAACCTAAAAATAA
Found at i:97400593 original size:15 final size:15
Alignment explanation
Indices: 97400573--97400604 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
97400563 TAAGGGTTAG
*
97400573 AGAGGGGCTATGGAT
1 AGAGGGGCTATAGAT
97400588 AGAGGGGCTATAGAT
1 AGAGGGGCTATAGAT
97400603 AG
1 AG
97400605 TTCCAGACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.44, T:0.19
Consensus pattern (15 bp):
AGAGGGGCTATAGAT
Found at i:97405176 original size:11 final size:11
Alignment explanation
Indices: 97405140--97405225 Score: 55
Period size: 11 Copynumber: 7.5 Consensus size: 11
97405130 ATTTTGTCAC
*
97405140 TATTTTACTAT
1 TATTTTATTAT
* *
97405151 TATATTACTAT
1 TATTTTATTAT
97405162 TATTTTATTAT
1 TATTTTATTAT
*
97405173 TATTATTTGAATAT
1 TA-T-TTT-ATTAT
* * *
97405187 TATATAAATAT
1 TATTTTATTAT
*
97405198 TATTTTATTGT
1 TATTTTATTAT
*
97405209 TAATTTTGTTAT
1 T-ATTTTATTAT
97405221 TATTT
1 TATTT
97405226 GCTTGTTAAG
Statistics
Matches: 59, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
11 38 0.64
12 11 0.19
13 4 0.07
14 6 0.10
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.63
Consensus pattern (11 bp):
TATTTTATTAT
Found at i:97405821 original size:22 final size:22
Alignment explanation
Indices: 97405769--97405821 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
97405759 ATTATAACTT
*
97405769 TAAAATATTTTTATATTAATATT
1 TAAAAT-TTTTTATATTAATATC
* *
97405792 TTATATTTTTTATAATTAA-ATC
1 TAAAATTTTTTAT-ATTAATATC
97405814 TAAAATTT
1 TAAAATTT
97405822 AAAAATATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
22 15 0.62
23 9 0.38
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (22 bp):
TAAAATTTTTTATATTAATATC
Found at i:97407093 original size:16 final size:16
Alignment explanation
Indices: 97407074--97407104 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
97407064 ATCCTGCAAA
97407074 ACATACATACATACAC
1 ACATACATACATACAC
*
97407090 ACATACATATATACA
1 ACATACATACATACA
97407105 TTCATAGATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.26, G:0.00, T:0.23
Consensus pattern (16 bp):
ACATACATACATACAC
Found at i:97415833 original size:12 final size:12
Alignment explanation
Indices: 97415816--97415876 Score: 68
Period size: 12 Copynumber: 5.1 Consensus size: 12
97415806 TTGCTTTCAG
97415816 CCTTCTCCCTTT
1 CCTTCTCCCTTT
* *
97415828 CCTTCTCGCGTT
1 CCTTCTCCCTTT
97415840 CCTTCTCCCTTT
1 CCTTCTCCCTTT
* * *
97415852 CCTTTTCACGTT
1 CCTTCTCCCTTT
*
97415864 CCTTCTCCTTTT
1 CCTTCTCCCTTT
97415876 C
1 C
97415877 AGTTCTTTCT
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.02, C:0.44, G:0.05, T:0.49
Consensus pattern (12 bp):
CCTTCTCCCTTT
Found at i:97415848 original size:24 final size:24
Alignment explanation
Indices: 97415816--97415876 Score: 95
Period size: 24 Copynumber: 2.5 Consensus size: 24
97415806 TTGCTTTCAG
*
97415816 CCTTCTCCCTTTCCTTCTCGCGTT
1 CCTTCTCCCTTTCCTTCTCACGTT
*
97415840 CCTTCTCCCTTTCCTTTTCACGTT
1 CCTTCTCCCTTTCCTTCTCACGTT
*
97415864 CCTTCTCCTTTTC
1 CCTTCTCCCTTTC
97415877 AGTTCTTTCT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.02, C:0.44, G:0.05, T:0.49
Consensus pattern (24 bp):
CCTTCTCCCTTTCCTTCTCACGTT
Found at i:97415881 original size:17 final size:18
Alignment explanation
Indices: 97415847--97415886 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
97415837 GTTCCTTCTC
97415847 CCTT-TCCTTTTCACGTT
1 CCTTCTCCTTTTCACGTT
97415864 CCTTCTCCTTTTCA-GTT
1 CCTTCTCCTTTTCACGTT
*
97415881 CTTTCT
1 CCTTCT
97415887 TTCTCTCTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.05, C:0.35, G:0.05, T:0.55
Consensus pattern (18 bp):
CCTTCTCCTTTTCACGTT
Found at i:97416860 original size:73 final size:73
Alignment explanation
Indices: 97416736--97416969 Score: 240
Period size: 73 Copynumber: 3.1 Consensus size: 73
97416726 TAACCACCCA
*
97416736 TTTTCCTTCCCTCCTATCTTCCTTCTCCCAAAGAAAAAGGAAAAAAAGAAACTAGTTTCCTTTCA
1 TTTTCCTTCCCTCCTATCTTCCTTCTCCCAAAGAAAAAGGAAAAAAAGAAACTAGGTTCCTTTCA
*
97416801 AATCTTTC
66 AACCTTTC
* * * *
97416809 TTTTCCTTCCCTCTTATTTTCCTTCTACCC-AA-AAAAAGAGCAAAAATGAAACTAGGTTCCTTT
1 TTTTCCTTCCCTCCTATCTTCCTTCT-CCCAAAGAAAAAG-GAAAAAAAGAAACTAGGTTCCTTT
97416872 CAAACCTTTC
64 CAAACCTTTC
* * * **** * *
97416882 TTTTCCTTCCTCTAAACCCATTTTCATTTCTTCCC-TCCTAAAAGGAAAAAAATAAACTAGTTTC
1 TTTTCCTTCC-CT---CCTATCTTC-CTTC-TCCCAAAGAAAAAGGAAAAAAAGAAACTAGGTTC
97416946 CTTTCAAACCTTTC
60 CTTTCAAACCTTTC
97416960 TTTTCCTTCC
1 TTTTCCTTCC
97416970 TCTAATCCTA
Statistics
Matches: 136, Mismatches: 16, Indels: 13
0.82 0.10 0.08
Matches are distributed among these distances:
72 6 0.04
73 66 0.49
74 5 0.04
77 7 0.05
78 46 0.34
79 6 0.04
ACGTcount: A:0.29, C:0.28, G:0.06, T:0.37
Consensus pattern (73 bp):
TTTTCCTTCCCTCCTATCTTCCTTCTCCCAAAGAAAAAGGAAAAAAAGAAACTAGGTTCCTTTCA
AACCTTTC
Found at i:97421745 original size:27 final size:26
Alignment explanation
Indices: 97421722--97421779 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
97421712 TTATTTTGGG
*
97421722 ATTTAAGTTAGATTGAAAATTTTTCA
1 ATTTAAGTTAGATTAAAAATTTTTCA
97421748 ATTTAAGTTAGATTAAAAATTTTTCA
1 ATTTAAGTTAGATTAAAAATTTTTCA
97421774 ATTTAA
1 ATTTAA
97421780 ATTCGAATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.41, C:0.03, G:0.09, T:0.47
Consensus pattern (26 bp):
ATTTAAGTTAGATTAAAAATTTTTCA
Found at i:97425139 original size:24 final size:24
Alignment explanation
Indices: 97425112--97425159 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
97425102 CGCTAAGTTC
97425112 ACCGTTTTAGCTTCAGGGTTCGAG
1 ACCGTTTTAGCTTCAGGGTTCGAG
97425136 ACCGTTTTAGCTTCAGGGTTCGAG
1 ACCGTTTTAGCTTCAGGGTTCGAG
97425160 CTTTTATCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.17, C:0.21, G:0.29, T:0.33
Consensus pattern (24 bp):
ACCGTTTTAGCTTCAGGGTTCGAG
Found at i:97435461 original size:27 final size:27
Alignment explanation
Indices: 97435430--97435484 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
97435420 GGCTAAAAAG
97435430 TAAGTTTATTATTATATTATTTTATAA
1 TAAGTTTATTATTATATTATTTTATAA
97435457 TAAGTTTATTATTATATTATTTTATAA
1 TAAGTTTATTATTATATTATTTTATAA
97435484 T
1 T
97435485 CTTTCAATGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (27 bp):
TAAGTTTATTATTATATTATTTTATAA
Found at i:97437930 original size:20 final size:22
Alignment explanation
Indices: 97437905--97437944 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
97437895 TATGTGACAC
*
97437905 TTTAAA-AT-TATCATCTAATT
1 TTTAAATATATATAATCTAATT
97437925 TTTAAATATATATAATCTAA
1 TTTAAATATATATAATCTAA
97437945 AAAGCAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 2 0.12
22 9 0.53
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.47
Consensus pattern (22 bp):
TTTAAATATATATAATCTAATT
Done.