Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 287 of 295
Found at i:97449215 original size:14 final size:16
Alignment explanation
Indices: 97449191--97449224 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
97449181 ACTTATAGGG
97449191 TTTTCATTTTTAA-TT
1 TTTTCATTTTTAACTT
97449206 TTTTCA-TTTTAACTT
1 TTTTCATTTTTAACTT
97449221 TTTT
1 TTTT
97449225 TGTTTCAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.18, C:0.09, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTTCATTTTTAACTT
Found at i:97450646 original size:24 final size:24
Alignment explanation
Indices: 97450600--97450647 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
97450590 CTATTTGTTT
***
97450600 TATTTTATTTCCAAAATCTTAAAA
1 TATTTTATTTCCAAAAAAATAAAA
*
97450624 TATTTTATTTCTAAAAAAATAAAA
1 TATTTTATTTCCAAAAAAATAAAA
97450648 AAATAGGCTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (24 bp):
TATTTTATTTCCAAAAAAATAAAA
Found at i:97461428 original size:21 final size:20
Alignment explanation
Indices: 97461386--97461426 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
97461376 TTGTATTATA
*
97461386 TATTTTAATTAATATTATTT
1 TATTTTAAGTAATATTATTT
97461406 TATTGTTAAGTAA-ATTATTT
1 TATT-TTAAGTAATATTATTT
97461426 T
1 T
97461427 TAATATTTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (20 bp):
TATTTTAAGTAATATTATTT
Found at i:97466586 original size:11 final size:10
Alignment explanation
Indices: 97466565--97466622 Score: 71
Period size: 10 Copynumber: 5.6 Consensus size: 10
97466555 TATAAAAATT
97466565 AAAAATTAAA
1 AAAAATTAAA
97466575 AAAAATTAAA
1 AAAAATTAAA
* *
97466585 AAAAGTTCATA
1 AAAAATT-AAA
97466596 AAAAATTAATA
1 AAAAATTAA-A
*
97466607 AAAAATTAAG
1 AAAAATTAAA
97466617 AAAAAT
1 AAAAAT
97466623 AATAGCATAA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
10 23 0.56
11 18 0.44
ACGTcount: A:0.72, C:0.02, G:0.03, T:0.22
Consensus pattern (10 bp):
AAAAATTAAA
Found at i:97466598 original size:12 final size:11
Alignment explanation
Indices: 97466565--97466621 Score: 73
Period size: 11 Copynumber: 5.4 Consensus size: 11
97466555 TATAAAAATT
97466565 AAAAATTAA-A
1 AAAAATTAATA
97466575 AAAAATTAA-A
1 AAAAATTAATA
* *
97466585 AAAAGTTCATA
1 AAAAATTAATA
97466596 AAAAATTAATA
1 AAAAATTAATA
*
97466607 AAAAATTAAGA
1 AAAAATTAATA
97466618 AAAA
1 AAAA
97466622 TAATAGCATA
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
10 17 0.41
11 24 0.59
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.21
Consensus pattern (11 bp):
AAAAATTAATA
Found at i:97470788 original size:17 final size:18
Alignment explanation
Indices: 97470758--97470791 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
97470748 ATTTTTTTTA
97470758 TTTAAAAATATTATTCAT
1 TTTAAAAATATTATTCAT
*
97470776 TTTAATAAT-TTATTCA
1 TTTAAAAATATTATTCA
97470792 ATTGAACCGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (18 bp):
TTTAAAAATATTATTCAT
Found at i:97472816 original size:43 final size:43
Alignment explanation
Indices: 97472745--97472836 Score: 166
Period size: 43 Copynumber: 2.1 Consensus size: 43
97472735 TTTATACAAA
* *
97472745 TAATTTTGGTAAAAATAAATAATAAATGAACGATTGGGTGATT
1 TAATGTTGGCAAAAATAAATAATAAATGAACGATTGGGTGATT
97472788 TAATGTTGGCAAAAATAAATAATAAATGAACGATTGGGTGATT
1 TAATGTTGGCAAAAATAAATAATAAATGAACGATTGGGTGATT
97472831 TAATGT
1 TAATGT
97472837 GGGGAATAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.43, C:0.03, G:0.20, T:0.34
Consensus pattern (43 bp):
TAATGTTGGCAAAAATAAATAATAAATGAACGATTGGGTGATT
Found at i:97485383 original size:31 final size:31
Alignment explanation
Indices: 97485345--97485420 Score: 125
Period size: 31 Copynumber: 2.5 Consensus size: 31
97485335 TTGCAAAATG
97485345 GTCATTGAATTATTTGAAACTTTTTATTTAA
1 GTCATTGAATTATTTGAAACTTTTTATTTAA
* *
97485376 GTCATTGATTTATTTGAAAGTTTTTATTTAA
1 GTCATTGAATTATTTGAAACTTTTTATTTAA
*
97485407 GTCATTGGATTATT
1 GTCATTGAATTATT
97485421 AAGTTTTTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.29, C:0.05, G:0.13, T:0.53
Consensus pattern (31 bp):
GTCATTGAATTATTTGAAACTTTTTATTTAA
Found at i:97495909 original size:30 final size:30
Alignment explanation
Indices: 97495873--97495956 Score: 80
Period size: 30 Copynumber: 2.8 Consensus size: 30
97495863 ATTTTTTTTT
97495873 AAATTTTCATAAAACTTCTAAAAGTTTTAA
1 AAATTTTCATAAAACTTCTAAAAGTTTTAA
* * * * * *
97495903 AAATTTTAATTAGACTTATCAAAATTTTTGA
1 AAATTTTCATAAAACTTCT-AAAAGTTTTAA
*
97495934 AAATTCTCACTAAAAC-TCTAAAA
1 AAATTTTCA-TAAAACTTCTAAAA
97495957 AAAATTAAAA
Statistics
Matches: 41, Mismatches: 11, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
30 19 0.46
31 18 0.44
32 4 0.10
ACGTcount: A:0.46, C:0.12, G:0.04, T:0.38
Consensus pattern (30 bp):
AAATTTTCATAAAACTTCTAAAAGTTTTAA
Found at i:97499444 original size:19 final size:20
Alignment explanation
Indices: 97499418--97499462 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 20
97499408 TCTATTTTTA
97499418 TATAAAAAATAAAAATATTT
1 TATAAAAAATAAAAATATTT
* *
97499438 T-T-AAAAATATAATTATTT
1 TATAAAAAATAAAAATATTT
97499456 TATAAAA
1 TATAAAA
97499463 TTTTCCTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
18 15 0.71
19 2 0.10
20 4 0.19
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
TATAAAAAATAAAAATATTT
Found at i:97501235 original size:19 final size:19
Alignment explanation
Indices: 97501213--97501259 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
97501203 ATTATAAAAT
* *
97501213 AATTCAAAATATTTTTTAA
1 AATTCAAAATATTTATAAA
*
97501232 AATTCAGAATATTTATAAA
1 AATTCAAAATATTTATAAA
97501251 AATTTCAAA
1 AA-TTCAAA
97501260 TTTTACAATT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
19 18 0.78
20 5 0.22
ACGTcount: A:0.51, C:0.06, G:0.02, T:0.40
Consensus pattern (19 bp):
AATTCAAAATATTTATAAA
Found at i:97506604 original size:27 final size:27
Alignment explanation
Indices: 97506568--97506633 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 27
97506558 TCGATTAAGT
* *
97506568 TAAATAAACATGTTTGTGAATATTAAA
1 TAAATGAACATGTTCGTGAATATTAAA
97506595 TAAATGAACATGTTCGTGAATATTAAA
1 TAAATGAACATGTTCGTGAATATTAAA
97506622 TAAATGAACATG
1 TAAATGAACATG
97506634 AATAAAAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.47, C:0.06, G:0.14, T:0.33
Consensus pattern (27 bp):
TAAATGAACATGTTCGTGAATATTAAA
Found at i:97507139 original size:17 final size:18
Alignment explanation
Indices: 97507091--97507139 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
97507081 AATATATATG
* *
97507091 ATTTATTAATTATTTTTT
1 ATTTACTAAATATTTTTT
97507109 ATTTACTCAAAT-TTTTTT
1 ATTTACT-AAATATTTTTT
97507127 -TTTAC-AAATATTT
1 ATTTACTAAATATTT
97507140 ATGGAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
15 4 0.15
16 3 0.11
17 5 0.19
18 12 0.44
19 3 0.11
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (18 bp):
ATTTACTAAATATTTTTT
Found at i:97511857 original size:21 final size:23
Alignment explanation
Indices: 97511806--97511861 Score: 62
Period size: 25 Copynumber: 2.4 Consensus size: 23
97511796 ATCGTCCAAA
97511806 AATTATTTTATGGACGTTTTTCATC
1 AATTA-TTTATGGACGTTTTT-ATC
*
97511831 ACATTATTTATGGTC-TTTTT-TC
1 A-ATTATTTATGGACGTTTTTATC
97511853 AATTATTTA
1 AATTATTTA
97511862 ATGACATTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
21 8 0.28
22 3 0.10
24 5 0.17
25 9 0.31
26 4 0.14
ACGTcount: A:0.25, C:0.11, G:0.09, T:0.55
Consensus pattern (23 bp):
AATTATTTATGGACGTTTTTATC
Found at i:97515260 original size:19 final size:17
Alignment explanation
Indices: 97515236--97515270 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
97515226 AATTAAATCG
97515236 AAATTAAAGTTTTATTTTT
1 AAATTAAA-TTTT-TTTTT
97515255 AAATTAAATTTTTTTT
1 AAATTAAATTTTTTTT
97515271 GAAAATTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 4 0.25
19 8 0.50
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (17 bp):
AAATTAAATTTTTTTTT
Found at i:97515276 original size:18 final size:19
Alignment explanation
Indices: 97515236--97515277 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
97515226 AATTAAATCG
*
97515236 AAATTAAAGTTTTATTTTT
1 AAATTAAAGTTTTATTTTA
97515255 AAATTAAA-TTTT-TTTTGA
1 AAATTAAAGTTTTATTTT-A
97515273 AAATT
1 AAATT
97515278 TTGATGCTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 4 0.19
18 9 0.43
19 8 0.38
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (19 bp):
AAATTAAAGTTTTATTTTA
Found at i:97526038 original size:24 final size:24
Alignment explanation
Indices: 97526010--97526058 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
97526000 AAACAGTTCT
97526010 AAACATTATATATATATAATCAAG
1 AAACATTATATATATATAATCAAG
97526034 AAACATTATATATATATAATCAAG
1 AAACATTATATATATATAATCAAG
97526058 A
1 A
97526059 TTTATAATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.55, C:0.08, G:0.04, T:0.33
Consensus pattern (24 bp):
AAACATTATATATATATAATCAAG
Found at i:97527510 original size:21 final size:21
Alignment explanation
Indices: 97527486--97527550 Score: 53
Period size: 21 Copynumber: 3.2 Consensus size: 21
97527476 ATAACAAAAC
97527486 AACTTCAAGTGTCTATTTGAT
1 AACTTCAAGTGTCTATTTGAT
* * * * * *
97527507 AAC-TAAAATAT-AATTTAAC
1 AACTTCAAGTGTCTATTTGAT
*
97527526 AACTTCAAGTGCCTATTTGAT
1 AACTTCAAGTGTCTATTTGAT
97527547 AACT
1 AACT
97527551 AAAATATAAT
Statistics
Matches: 29, Mismatches: 13, Indels: 4
0.63 0.28 0.09
Matches are distributed among these distances:
19 8 0.28
20 9 0.31
21 12 0.41
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.37
Consensus pattern (21 bp):
AACTTCAAGTGTCTATTTGAT
Found at i:97527519 original size:40 final size:40
Alignment explanation
Indices: 97527474--97527559 Score: 136
Period size: 40 Copynumber: 2.1 Consensus size: 40
97527464 AGATCTGTTC
*
97527474 ATATAACAAAACAACTTCAAGTGTCTATTTGATAACTAAA
1 ATATAACAAAACAACTTCAAGTGCCTATTTGATAACTAAA
***
97527514 ATATAATTTAACAACTTCAAGTGCCTATTTGATAACTAAA
1 ATATAACAAAACAACTTCAAGTGCCTATTTGATAACTAAA
97527554 ATATAA
1 ATATAA
97527560 TTTAGGGGTC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.47, C:0.14, G:0.07, T:0.33
Consensus pattern (40 bp):
ATATAACAAAACAACTTCAAGTGCCTATTTGATAACTAAA
Found at i:97527560 original size:40 final size:40
Alignment explanation
Indices: 97527483--97527563 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
97527473 CATATAACAA
*
97527483 AACAACTTCAAGTGTCTATTTGATAACTAAAATATAATTT
1 AACAACTTCAAGTGCCTATTTGATAACTAAAATATAATTT
97527523 AACAACTTCAAGTGCCTATTTGATAACTAAAATATAATTT
1 AACAACTTCAAGTGCCTATTTGATAACTAAAATATAATTT
97527563 A
1 A
97527564 GGGGTCATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (40 bp):
AACAACTTCAAGTGCCTATTTGATAACTAAAATATAATTT
Found at i:97544606 original size:15 final size:15
Alignment explanation
Indices: 97544588--97544625 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
97544578 TTTTAAAATT
97544588 TTAAAAATAGAGAAA
1 TTAAAAATAGAGAAA
*
97544603 TTAAAAAT-GATAAA
1 TTAAAAATAGAGAAA
*
97544617 ATAAAAATA
1 TTAAAAATA
97544626 TAAGGATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (15 bp):
TTAAAAATAGAGAAA
Found at i:97544913 original size:12 final size:12
Alignment explanation
Indices: 97544896--97544920 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
97544886 CAAATAAAAC
97544896 ATAATTAAATTA
1 ATAATTAAATTA
97544908 ATAATTAAATTA
1 ATAATTAAATTA
97544920 A
1 A
97544921 AATAATAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
ATAATTAAATTA
Found at i:97544927 original size:3 final size:3
Alignment explanation
Indices: 97544921--97544954 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
97544911 ATTAAATTAA
97544921 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
97544955 TCAGCATTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:97549676 original size:13 final size:13
Alignment explanation
Indices: 97549658--97549683 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
97549648 CATCATCTCA
97549658 CTTTAACAAAATC
1 CTTTAACAAAATC
97549671 CTTTAACAAAATC
1 CTTTAACAAAATC
97549684 TAAATTCATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31
Consensus pattern (13 bp):
CTTTAACAAAATC
Found at i:97550870 original size:17 final size:17
Alignment explanation
Indices: 97550850--97550904 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
97550840 GTTATTATCA
97550850 ATTAATATTTTAATAAT
1 ATTAATATTTTAATAAT
*
97550867 ATTAAGTA-ATTAATAAT
1 ATTAA-TATTTTAATAAT
* *
97550884 ATTTATATTTATATTAAT
1 ATTAATATTT-TAATAAT
97550902 ATT
1 ATT
97550905 GACGTGTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
16 2 0.06
17 18 0.58
18 11 0.35
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (17 bp):
ATTAATATTTTAATAAT
Found at i:97554507 original size:15 final size:15
Alignment explanation
Indices: 97554487--97554538 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
97554477 ACTATAAAAC
97554487 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
97554502 ATTTATAATTGCAATAAAT
1 ATTTATTATT--AAT--AT
*
97554521 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
97554536 ATT
1 ATT
97554539 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 14 0.47
17 5 0.17
19 11 0.37
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:97556133 original size:18 final size:17
Alignment explanation
Indices: 97556098--97556135 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
97556088 TGTTAAGGGA
97556098 TAACATTATTAAAATTT
1 TAACATTATTAAAATTT
97556115 TAACATT-TTAATTAATTT
1 TAACATTATTAA--AATTT
97556133 TAA
1 TAA
97556136 TTTCAATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 4 0.21
17 7 0.37
18 8 0.42
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (17 bp):
TAACATTATTAAAATTT
Found at i:97559770 original size:6 final size:6
Alignment explanation
Indices: 97559759--97559787 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
97559749 TCGGGAAGCA
97559759 ATAATT ATAATT ATAATT ATAATT ATAAT
1 ATAATT ATAATT ATAATT ATAATT ATAAT
97559788 CCCAATAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
ATAATT
Found at i:97560423 original size:46 final size:47
Alignment explanation
Indices: 97560353--97560478 Score: 173
Period size: 49 Copynumber: 2.7 Consensus size: 47
97560343 GTATAAAAAG
*
97560353 ATTAACTTATAATTTTAAAATTATAAAAATAC-AATTTTATCATCGC
1 ATTAACTTATAATTTTAAAATTATAAAAATACTAATTTTATCACCGC
* * * * *
97560399 ATTAACTTATAAATTCAAATTTATAAAAAAACATTAATTTTATCACCGT
1 ATTAACTTATAATTTTAAAATTATAAAAATAC--TAATTTTATCACCGC
97560448 ATTAACTTATAATTTTAAAATTATAAAAATA
1 ATTAACTTATAATTTTAAAATTATAAAAATA
97560479 ATTAAAATAA
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
46 28 0.42
49 39 0.58
ACGTcount: A:0.48, C:0.10, G:0.02, T:0.40
Consensus pattern (47 bp):
ATTAACTTATAATTTTAAAATTATAAAAATACTAATTTTATCACCGC
Found at i:97561611 original size:67 final size:69
Alignment explanation
Indices: 97561479--97561611 Score: 180
Period size: 67 Copynumber: 2.0 Consensus size: 69
97561469 TAATTATTCC
* * ** * *
97561479 TTTTGCTGTTAGCCTTTAGGACATTTTTGGTAACTTATAAGGTATTGGTCTTGTAAGTTAGTATT
1 TTTTGCTGTTAGCCTTTAGGACATTTTTGGTAACTTACAAGCTATTAATCTTATAAATTAGTATT
97561544 ATTA
66 ATTA
* *
97561548 TTTTGCT-TTAGCCTTTAGGAGA-TTTTGGTAATTTACAAGCTATTAATCTTATAAATTAGTATT
1 TTTTGCTGTTAGCCTTTAGGACATTTTTGGTAACTTACAAGCTATTAATCTTATAAATTAGTATT
97561611 A
66 A
97561612 ATTTATAAGC
Statistics
Matches: 56, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
67 35 0.62
68 14 0.25
69 7 0.12
ACGTcount: A:0.26, C:0.09, G:0.17, T:0.47
Consensus pattern (69 bp):
TTTTGCTGTTAGCCTTTAGGACATTTTTGGTAACTTACAAGCTATTAATCTTATAAATTAGTATT
ATTA
Found at i:97564862 original size:19 final size:21
Alignment explanation
Indices: 97564838--97564885 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
97564828 AAATTTTATA
*
97564838 TAAAAATTATA-AG-AAATTC
1 TAAAAATTACATAGAAAATTC
97564857 TAAAAA-TACATAGAAAATTC
1 TAAAAATTACATAGAAAATTC
*
97564877 AAAAAATTA
1 TAAAAATTA
97564886 AATAAAATAG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 3 0.12
19 8 0.33
20 11 0.46
21 2 0.08
ACGTcount: A:0.62, C:0.06, G:0.04, T:0.27
Consensus pattern (21 bp):
TAAAAATTACATAGAAAATTC
Found at i:97568567 original size:3 final size:3
Alignment explanation
Indices: 97568561--97568596 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
97568551 AGCAGCAGCC
97568561 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
97568597 GGTCATAGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:97571289 original size:3 final size:3
Alignment explanation
Indices: 97571281--97571318 Score: 67
Period size: 3 Copynumber: 12.7 Consensus size: 3
97571271 GTTGGTTGAA
*
97571281 ATT ATT ATT ATT ATT ATT ATT ACT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
97571319 ATCTTTAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:97579103 original size:23 final size:23
Alignment explanation
Indices: 97579064--97579111 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
97579054 ACTTTAATCC
**
97579064 ATTTATTTTTTTCTT-AATTTCAA
1 ATTTATTTTTTAATTAAATTT-AA
97579087 ATTTATTTTTTAATTAAATTTAA
1 ATTTATTTTTTAATTAAATTTAA
97579110 AT
1 AT
97579112 ATTTAATCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 17 0.77
24 5 0.23
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (23 bp):
ATTTATTTTTTAATTAAATTTAA
Found at i:97580915 original size:21 final size:20
Alignment explanation
Indices: 97580890--97580932 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
97580880 ACAATTAAAA
*
97580890 TTTTAAAATTTTTAAAATATT
1 TTTTAAAATCTTTAAAAT-TT
* *
97580911 TTTTATAATCTTTATAATTT
1 TTTTAAAATCTTTAAAATTT
97580931 TT
1 TT
97580933 AATAGTTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTTAAAATCTTTAAAATTT
Found at i:97580974 original size:9 final size:9
Alignment explanation
Indices: 97580906--97580974 Score: 52
Period size: 9 Copynumber: 7.7 Consensus size: 9
97580896 AATTTTTAAA
97580906 ATATTTTTT
1 ATATTTTTT
* *
97580915 ATAATCTTT
1 ATATTTTTT
*
97580924 ATAATTTTT
1 ATATTTTTT
*
97580933 A-ATAGTTTT
1 ATAT-TTTTT
97580942 ATACTTTTTT
1 ATA-TTTTTT
*
97580952 AT-TTTTTA
1 ATATTTTTT
*
97580960 AAATTTTTT
1 ATATTTTTT
97580969 ATATTT
1 ATATTT
97580975 AAAATATTAA
Statistics
Matches: 46, Mismatches: 10, Indels: 8
0.72 0.16 0.12
Matches are distributed among these distances:
8 7 0.15
9 31 0.67
10 7 0.15
11 1 0.02
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (9 bp):
ATATTTTTT
Found at i:97580975 original size:16 final size:17
Alignment explanation
Indices: 97580946--97580979 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
97580936 AGTTTTATAC
*
97580946 TTTTTTATTTTTTAAAA
1 TTTTTTATTATTTAAAA
97580963 TTTTTTA-TATTTAAAA
1 TTTTTTATTATTTAAAA
97580979 T
1 T
97580980 ATTAATTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTTTTATTATTTAAAA
Found at i:97582309 original size:14 final size:12
Alignment explanation
Indices: 97582281--97582314 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
97582271 CGACCGGCCC
97582281 ATATTATTTTTT
1 ATATTATTTTTT
97582293 ATATTATTTTTT
1 ATATTATTTTTT
*
97582305 ATATAATTTT
1 ATATTATTTT
97582315 AAAATATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (12 bp):
ATATTATTTTTT
Found at i:97582557 original size:22 final size:22
Alignment explanation
Indices: 97582532--97582574 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
97582522 TATCTAAACA
97582532 ATAACAACAAAATAGTAGCAAC
1 ATAACAACAAAATAGTAGCAAC
* **
97582554 ATAATAGTAAAATAGTAGCAA
1 ATAACAACAAAATAGTAGCAA
97582575 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.58, C:0.12, G:0.12, T:0.19
Consensus pattern (22 bp):
ATAACAACAAAATAGTAGCAAC
Found at i:97582578 original size:11 final size:11
Alignment explanation
Indices: 97582539--97582579 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
97582529 ACAATAACAA
97582539 CAAAATAGTAG
1 CAAAATAGTAG
* *
97582550 CAACATAATAG
1 CAAAATAGTAG
*
97582561 TAAAATAGTAG
1 CAAAATAGTAG
97582572 CAAAATAG
1 CAAAATAG
97582580 GGAGAAAACA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.20
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:97586396 original size:29 final size:32
Alignment explanation
Indices: 97586359--97586432 Score: 93
Period size: 29 Copynumber: 2.4 Consensus size: 32
97586349 TTCTAGGGCT
97586359 AAATGTAATTTTTAGAAAA-TTTA-GGGT-TA
1 AAATGTAATTTTTAGAAAATTTTAGGGGTCTA
*
97586388 AAATGTAA-TTTAAGAAAATTTTAGGGGTCTA
1 AAATGTAATTTTTAGAAAATTTTAGGGGTCTA
*
97586419 AGATGTAAATTTTT
1 AAATGT-AATTTTT
97586433 TTGAAATTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
28 9 0.24
29 12 0.32
30 4 0.11
31 7 0.19
32 2 0.05
33 3 0.08
ACGTcount: A:0.41, C:0.01, G:0.18, T:0.41
Consensus pattern (32 bp):
AAATGTAATTTTTAGAAAATTTTAGGGGTCTA
Found at i:97586994 original size:75 final size:75
Alignment explanation
Indices: 97586738--97587388 Score: 799
Period size: 75 Copynumber: 8.5 Consensus size: 75
97586728 CCTAAGGTTT
*
97586738 AACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAG
1 AACTCACCTCTCGCAATATGAGTTGA-----TTTTTTTGAAAGACAGAAATTGAAAATACCTCA-
* *
97586803 GGCGTGAT-TTGAGGTTC
60 -ACGTG-TCTTGAGGCTC
* *
97586820 AACTCACCTCTCGCAATATGAGTTGATTGATTTTTTTGAAA-AGTAGAAATTAAAAATACCTCAG
1 AACTCACCTCTCGCAATATGA---G-TTGATTTTTTTGAAAGA-CAGAAATTGAAAATACCTCA-
* * *
97586884 TATGTGAAC-CGAGGCTC
60 -ACGTG-TCTTGAGGCTC
*
97586901 AACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAGACAGAAATTGAAAATACCTCAACGTGT
1 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGT
97586966 CTTGAGGCTC
66 CTTGAGGCTC
** *
97586976 AACTCATTTCTCGTAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGT
1 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGT
97587041 CTTGAGGCTC
66 CTTGAGGCTC
** * * *
97587051 AACTCATTTCTTGCAATATGAGTTGATTTTTTTTGAAAGGCAGAAATTGAAAATACCCCAACGTG
1 AACTCACCTCTCGCAATATGAGTTGA-TTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTG
97587116 TCTTGAGGCTC
65 TCTTGAGGCTC
** * * *
97587127 AACTCATTTATCACAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAACGTGT
1 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGT
97587192 CTTGAGGCTC
66 CTTGAGGCTC
* * * **
97587202 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAATTGAAAATATCTCGGCGTGT
1 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGT
**
97587267 GACCCGAGGCTC
66 --CTTGAGGCTC
* * * *
97587279 AACTCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGT
1 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGT
97587342 CTTGAGGCTC
66 CTTGAGGCTC
97587352 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
1 AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA
97587389 TAGAAATAAA
Statistics
Matches: 509, Mismatches: 47, Indels: 33
0.86 0.08 0.06
Matches are distributed among these distances:
73 34 0.07
74 1 0.00
75 248 0.49
76 70 0.14
77 66 0.13
78 2 0.00
80 1 0.00
81 61 0.12
82 21 0.04
85 1 0.00
86 4 0.01
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (75 bp):
AACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGT
CTTGAGGCTC
Found at i:97587385 original size:150 final size:151
Alignment explanation
Indices: 97586611--97587388 Score: 791
Period size: 150 Copynumber: 5.0 Consensus size: 151
97586601 TTATTCTTTA
* ** ** * *
97586611 TTGAAAAACAAGAAATTGAAAATAGCTCGGAATGTGACCCGAAGTTCAACTCACCTCTCG-AATT
1 TTGAAAAAC-AGAAATTGAAAATACCTCGGCGTGTGACTTGAGGCTCAACTCACCTCTCGCAA-T
* * * * * *
97586675 ATGAGTTGA-TCTTTGAAAAACCAAAAAAAATTTGAAAATATCTCAGCGTGTGACCTAAGGTTTA
64 ATGAGTTGATTTTTTGAAAAA-C---AAAAA-TTGAAAATACCTCAGCGTGT--CTTGAGGCTCA
97586739 ACTCACCTCTCGCAATATGAGTTGATTTTTTTTTT
122 ACTCACCTCTCGCAATATGAGTTGA-----TTTTT
* * *
97586774 TTGAAAAACAGAAATTGAAAATACCTCAGG-GCGTGATTTGAGGTTCAACTCACCTCTCGCAATA
1 TTGAAAAACAGAAATTGAAAATACCTC-GGCGTGTGACTTGAGGCTCAACTCACCTCTCGCAATA
** * * * * *
97586838 TGAGTTGATTGATTTTTTTGAAAAGTAGAAATTAAAAATACCTCAGTATGTGAAC-CGAGGCTCA
65 TGA---G-TTGA-TTTTTTGAAAAACAAAAATTGAAAATACCTCAG--CGTG-TCTTGAGGCTCA
97586902 ACTCACCTCTCGCAATATGAGTTGATTTTT
122 ACTCACCTCTCGCAATATGAGTTGATTTTT
* * ** ** *
97586932 TTTAAAGACAGAAATTGAAAATACCTCAACGTGT--CTTGAGGCTCAACTCATTTCTCGTAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACTTGAGGCTCAACTCACCTCTCGCAATAT
* * * **
97586995 GAGTTGATTTTTTTGAAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTT
66 GAGTTGA-TTTTTTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCT
*
97587060 CTTGCAATATGAGTTGATTTTTT
130 CTCGCAATATGAGTTGA-TTTTT
** * ** ** * *
97587083 TTGAAAGGCAGAAATTGAAAATACCCCAACGTGT--CTTGAGGCTCAACTCATTTATCACAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACTTGAGGCTCAACTCACCTCTCGCAATAT
* *
97587146 GAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACCT
66 GAGTTGA-TTTTTTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCT
97587211 CTCGCAATATGAGTTGATTTTT
130 CTCGCAATATGAGTTGATTTTT
* * **
97587233 TTGAAAAATAGAAATTGAAAATATCTCGGCGTGTGACCCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACTTGAGGCTCAACTCACCTCTCGCAATAT
*
97587298 GAGTTGA-TTTTTGAAAAACAAAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCACCTC
66 GAGTTGATTTTTTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTC
97587362 TCGCAATATGAGTTGATTTTT
131 TCGCAATATGAGTTGATTTTT
97587383 TTGAAA
1 TTGAAA
97587389 TAGAAATAAA
Statistics
Matches: 533, Mismatches: 66, Indels: 45
0.83 0.10 0.07
Matches are distributed among these distances:
149 1 0.00
150 146 0.27
151 140 0.26
152 63 0.12
153 1 0.00
156 26 0.05
158 33 0.06
162 45 0.08
163 56 0.11
164 5 0.01
165 4 0.01
166 4 0.01
168 9 0.02
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (151 bp):
TTGAAAAACAGAAATTGAAAATACCTCGGCGTGTGACTTGAGGCTCAACTCACCTCTCGCAATAT
GAGTTGATTTTTTGAAAAACAAAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCACCTC
TCGCAATATGAGTTGATTTTT
Found at i:97600871 original size:25 final size:26
Alignment explanation
Indices: 97600843--97600901 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
97600833 CTATATTACG
*
97600843 TATATATATT-ATACTATTTTATGTA
1 TATATATATTAATACTATATTATGTA
* *
97600868 TATATCT-TTAATACTATATTATTTA
1 TATATATATTAATACTATATTATGTA
97600893 TATATATAT
1 TATATATAT
97600902 ATATTTTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 2 0.07
25 25 0.89
26 1 0.04
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (26 bp):
TATATATATTAATACTATATTATGTA
Found at i:97600946 original size:22 final size:23
Alignment explanation
Indices: 97600890--97600982 Score: 80
Period size: 25 Copynumber: 3.9 Consensus size: 23
97600880 ACTATATTAT
* *
97600890 TTATATATATATATATTTTTTACA
1 TTATAT-TATGTATATATTTTACA
*
97600914 TGTTATCTTATGTATATATTTTA-A
1 --TTATATTATGTATATATTTTACA
*
97600938 TTATATTATGTATGTATTTTTTACA
1 TTATATTATGTA--TATATTTTACA
* *
97600963 CTATATTATGTACATATTTT
1 TTATATTATGTATATATTTT
97600983 TAATATTATC
Statistics
Matches: 56, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
22 11 0.20
23 6 0.11
24 9 0.16
25 25 0.45
26 5 0.09
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.58
Consensus pattern (23 bp):
TTATATTATGTATATATTTTACA
Found at i:97600972 original size:25 final size:24
Alignment explanation
Indices: 97600922--97601008 Score: 70
Period size: 24 Copynumber: 3.5 Consensus size: 24
97600912 CATGTTATCT
*
97600922 TATGTATATATTTTAATTATATTATG
1 TATGTAT-T-TTTTAACTATATTATG
97600948 TATGTATTTTTTACACTATATTATG
1 TATGTATTTTTTA-ACTATATTATG
** * *
97600973 TACATA-TTTTTAA-TATTATCACG
1 TATGTATTTTTTAACTA-TATTATG
*
97600996 TATTTATTTTTTA
1 TATGTATTTTTTA
97601009 TATATGTACA
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
22 2 0.04
23 10 0.20
24 17 0.33
25 15 0.29
26 7 0.14
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (24 bp):
TATGTATTTTTTAACTATATTATG
Found at i:97600980 original size:47 final size:49
Alignment explanation
Indices: 97600890--97601008 Score: 120
Period size: 48 Copynumber: 2.5 Consensus size: 49
97600880 ACTATATTAT
* * * *
97600890 TTATA-TATATATATATTTTTTACATGTTATCTTATGTATATA-TTTTAA
1 TTATATTATGTATATATTTTTTACA-GCTATATTATGTACATATTTTTAA
*
97600938 TTATATTATGTATGTATTTTTTACA-CTATATTATGTACATATTTTTAA
1 TTATATTATGTATATATTTTTTACAGCTATATTATGTACATATTTTTAA
* * *
97600986 -TATTATCACGTATTTATTTTTTA
1 TTA-TATTATGTATATATTTTTTA
97601009 TATATGTACA
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
47 15 0.25
48 28 0.47
49 17 0.28
ACGTcount: A:0.31, C:0.06, G:0.05, T:0.58
Consensus pattern (49 bp):
TTATATTATGTATATATTTTTTACAGCTATATTATGTACATATTTTTAA
Found at i:97601161 original size:16 final size:15
Alignment explanation
Indices: 97601137--97601171 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
97601127 TAATTATTAT
97601137 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
97601153 TATTTTAATATTTTA
1 TATTCTAATATTTTA
97601168 TATT
1 TATT
97601172 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:97602199 original size:11 final size:11
Alignment explanation
Indices: 97602185--97602219 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
97602175 TCCTTCCCCC
97602185 CTCCCTTCTCT
1 CTCCCTTCTCT
97602196 CTCCCTTCTCT
1 CTCCCTTCTCT
97602207 CTTCCC-TCTCT
1 C-TCCCTTCTCT
97602218 CT
1 CT
97602220 TTTTTTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 1 0.04
11 18 0.78
12 4 0.17
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (11 bp):
CTCCCTTCTCT
Found at i:97603438 original size:13 final size:13
Alignment explanation
Indices: 97603353--97603439 Score: 54
Period size: 13 Copynumber: 6.6 Consensus size: 13
97603343 TATATTAGTG
97603353 TATATTTTATGTA
1 TATATTTTATGTA
* * *
97603366 CATATGTATATATA
1 TATAT-TTTATGTA
*
97603380 TATATTTTTTGTA
1 TATATTTTATGTA
* *
97603393 CATATCATTATTGTA
1 TATAT-TTTA-TGTA
*
97603408 TATTATTGT-TGTA
1 TA-TATTTTATGTA
97603421 -A-ATTTTATGTA
1 TATATTTTATGTA
97603432 TATATTTT
1 TATATTTT
97603440 TTATGTACGT
Statistics
Matches: 53, Mismatches: 14, Indels: 14
0.65 0.17 0.17
Matches are distributed among these distances:
10 4 0.08
11 4 0.08
12 2 0.04
13 22 0.42
14 12 0.23
15 6 0.11
16 3 0.06
ACGTcount: A:0.31, C:0.03, G:0.08, T:0.57
Consensus pattern (13 bp):
TATATTTTATGTA
Found at i:97616103 original size:48 final size:48
Alignment explanation
Indices: 97616032--97616128 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
97616022 CTACAATGCC
97616032 AAGATCTCACAAGCTTAAGACGTTGTAAGCCCACAATTTCACAAGCAT
1 AAGATCTCACAAGCTTAAGACGTTGTAAGCCCACAATTTCACAAGCAT
97616080 AAGATCTCACAAGCTTAAGACGTTGTAAGCCCACAATTTCACAAGCAT
1 AAGATCTCACAAGCTTAAGACGTTGTAAGCCCACAATTTCACAAGCAT
97616128 A
1 A
97616129 CACAGCATGG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.38, C:0.25, G:0.14, T:0.23
Consensus pattern (48 bp):
AAGATCTCACAAGCTTAAGACGTTGTAAGCCCACAATTTCACAAGCAT
Found at i:97622595 original size:12 final size:12
Alignment explanation
Indices: 97622578--97622602 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
97622568 TTGATATGAT
97622578 ATTAATATTTTA
1 ATTAATATTTTA
97622590 ATTAATATTTTA
1 ATTAATATTTTA
97622602 A
1 A
97622603 AGACTCTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
ATTAATATTTTA
Found at i:97623568 original size:18 final size:19
Alignment explanation
Indices: 97623534--97623574 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
97623524 AAAAGTTAAA
* *
97623534 AAAATTCAAAATAATTTTT
1 AAAATTAAAAATAATTTAT
97623553 AAAATTAAAAAT-ATTTAT
1 AAAATTAAAAATAATTTAT
97623571 AAAA
1 AAAA
97623575 AATCAAAGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAATTAAAAATAATTTAT
Found at i:97623575 original size:19 final size:19
Alignment explanation
Indices: 97623520--97623575 Score: 53
Period size: 19 Copynumber: 3.0 Consensus size: 19
97623510 AATTGGTCTC
* *
97623520 TTAAAAA-AGTTAAAAAAA
1 TTAAAAATATTTATAAAAA
* *
97623538 TTCAAAATAATTT-TTAAAA
1 TTAAAAAT-ATTTATAAAAA
97623557 TTAAAAATATTTATAAAAA
1 TTAAAAATATTTATAAAAA
97623576 ATCAAAGATT
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
18 10 0.34
19 16 0.55
20 3 0.10
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (19 bp):
TTAAAAATATTTATAAAAA
Found at i:97623629 original size:20 final size:20
Alignment explanation
Indices: 97623532--97623631 Score: 73
Period size: 20 Copynumber: 4.8 Consensus size: 20
97623522 AAAAAAGTTA
97623532 AAAAAATTCAAAATAATTTT
1 AAAAAATTCAAAATAATTTT
* *
97623552 -TAAAATTAAAAAT-ATTTAT
1 AAAAAATTCAAAATAATTT-T
97623571 AAAAAA-TCAAAGATTTATATTTT
1 AAAAAATTCAAA-A--TA-ATTTT
*
97623594 AAAAAAATAT-ATAATAATTTT
1 -AAAAAAT-TCAAAATAATTTT
*
97623615 AAAAAATTCCAAATAAT
1 AAAAAATTCAAAATAAT
97623632 ATATAAAGAA
Statistics
Matches: 62, Mismatches: 7, Indels: 22
0.68 0.08 0.24
Matches are distributed among these distances:
18 4 0.06
19 17 0.27
20 18 0.29
21 5 0.08
22 3 0.05
23 1 0.02
24 11 0.18
25 2 0.03
26 1 0.02
ACGTcount: A:0.59, C:0.04, G:0.01, T:0.36
Consensus pattern (20 bp):
AAAAAATTCAAAATAATTTT
Found at i:97628808 original size:23 final size:22
Alignment explanation
Indices: 97628781--97628823 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
97628771 GATGTCAAAA
97628781 TATAATTTTATCATTTATTAATT
1 TATAATTTTATCATTT-TTAATT
*
97628804 TATAATTTTATTATTTTTAA
1 TATAATTTTATCATTTTTAA
97628824 AAGAATTAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (22 bp):
TATAATTTTATCATTTTTAATT
Found at i:97634337 original size:23 final size:25
Alignment explanation
Indices: 97634297--97634348 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 25
97634287 TTTAAATTAT
97634297 TTTTAAAAATTTAATTAATT-AAA-
1 TTTTAAAAATTTAATTAATTGAAAG
*
97634320 TTTTATAAAA-TTATTTAATTGAAAG
1 TTTTA-AAAATTTAATTAATTGAAAG
97634345 TTTT
1 TTTT
97634349 TAGAATATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 14 0.56
24 7 0.28
25 4 0.16
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (25 bp):
TTTTAAAAATTTAATTAATTGAAAG
Found at i:97643647 original size:29 final size:29
Alignment explanation
Indices: 97643609--97643692 Score: 141
Period size: 29 Copynumber: 2.9 Consensus size: 29
97643599 GTAGGATCAT
* *
97643609 ATCAAATTAGCCCATCTACTATTAAATGG
1 ATCAATTTAGCCCCTCTACTATTAAATGG
97643638 ATCAATTTAGCCCCTCTACTATTAAATGG
1 ATCAATTTAGCCCCTCTACTATTAAATGG
*
97643667 ATCAATTTAGCCCCTATACTATTAAA
1 ATCAATTTAGCCCCTCTACTATTAAA
97643693 AAGAATCAAA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.36, C:0.23, G:0.08, T:0.33
Consensus pattern (29 bp):
ATCAATTTAGCCCCTCTACTATTAAATGG
Found at i:97646352 original size:3 final size:3
Alignment explanation
Indices: 97646346--97646387 Score: 57
Period size: 3 Copynumber: 14.0 Consensus size: 3
97646336 AGTATTTATT
* * *
97646346 ATC ATC ATC GTC ATC GTC ATC GTC ATC ATC ATC ATC ATC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
97646388 CTTCAAATTT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.26, C:0.33, G:0.07, T:0.33
Consensus pattern (3 bp):
ATC
Found at i:97646367 original size:12 final size:12
Alignment explanation
Indices: 97646346--97646387 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
97646336 AGTATTTATT
97646346 ATCATCATCGTC
1 ATCATCATCGTC
*
97646358 ATCGTCATCGTC
1 ATCATCATCGTC
*
97646370 ATCATCATCATC
1 ATCATCATCGTC
97646382 ATCATC
1 ATCATC
97646388 CTTCAAATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.26, C:0.33, G:0.07, T:0.33
Consensus pattern (12 bp):
ATCATCATCGTC
Found at i:97646826 original size:21 final size:21
Alignment explanation
Indices: 97646802--97646842 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
97646792 AAATTTTAAA
*
97646802 TTTATTATG-TTGGATTTATAT
1 TTTATAATGATTGG-TTTATAT
97646823 TTTATAATGATTGGTTTATA
1 TTTATAATGATTGGTTTATA
97646843 GTATCATGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.59
Consensus pattern (21 bp):
TTTATAATGATTGGTTTATAT
Found at i:97652556 original size:53 final size:51
Alignment explanation
Indices: 97652427--97652622 Score: 288
Period size: 50 Copynumber: 3.8 Consensus size: 51
97652417 GATAATAACA
* ** * * *
97652427 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATCTCGG
* *
97652478 TGCCCATGCCATGTCCCAGACATGGTCTTACATGGAACCTCCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA--TCCTCTCATCTCGG
97652531 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATCTCGG
97652581 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCCTCT
97652623 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
50 55 0.41
51 34 0.26
53 44 0.33
ACGTcount: A:0.20, C:0.31, G:0.22, T:0.27
Consensus pattern (51 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATCTCGG
Found at i:97652615 original size:103 final size:104
Alignment explanation
Indices: 97652427--97652621 Score: 311
Period size: 103 Copynumber: 1.9 Consensus size: 104
97652417 GATAATAACA
** * * * *
97652427 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGTTGGTGCCCATGCCATGT
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATCTCGGTGCCAATGCCATGT
97652492 CCCAGACATGGTCTTACATGGAACCTCCTCTCATCTCGG
66 CCCAGACATGGTCTTACATGGAACCTCCTCTCATCTCGG
*
97652531 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGGTGCCAATGCCATGT
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATCTCGGTGCCAATGCCATGT
*
97652595 CCCAGACATGGTCTTACATGGGACCTC
66 CCCAGACATGGTCTTACATGGAACCTC
97652622 TTTACCCAAA
Statistics
Matches: 83, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
103 47 0.57
104 36 0.43
ACGTcount: A:0.20, C:0.31, G:0.23, T:0.27
Consensus pattern (104 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATCCTCTCATCTCGGTGCCAATGCCATGT
CCCAGACATGGTCTTACATGGAACCTCCTCTCATCTCGG
Found at i:97652737 original size:13 final size:13
Alignment explanation
Indices: 97652716--97652747 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
97652706 GCTTAGATCA
*
97652716 TCATCAAATAAAT
1 TCATAAAATAAAT
97652729 TCATAAAATAAAT
1 TCATAAAATAAAT
97652742 TCATAA
1 TCATAA
97652748 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:97652993 original size:30 final size:30
Alignment explanation
Indices: 97652958--97653015 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
97652948 CCTCGACTCT
*
97652958 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
97652988 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
97653016 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:97669957 original size:21 final size:22
Alignment explanation
Indices: 97669916--97669959 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
97669906 GAATATATAT
*
97669916 AAAAATAAATAACAATGAAAAC
1 AAAAATAAATAAAAATGAAAAC
97669938 AAAAA-AAATAAAAAAT-AAAAC
1 AAAAATAAAT-AAAAATGAAAAC
97669959 A
1 A
97669960 CTTTTAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.80, C:0.07, G:0.02, T:0.11
Consensus pattern (22 bp):
AAAAATAAATAAAAATGAAAAC
Found at i:97671810 original size:87 final size:87
Alignment explanation
Indices: 97671705--97672074 Score: 215
Period size: 87 Copynumber: 4.3 Consensus size: 87
97671695 GACCTACTCT
* * * * * *
97671705 GCTGTAACCTCAGAGAGATAAGATCAT-TTATTTTAATCCACTCCACTGTAACTTCAGGGAGATA
1 GCTGTAATCTCAGGGAGATAAGATC-TCTGACTTCAATCCACTCCACTGTAACCTCAGGGAGATA
* *
97671769 GGATAGTG-TCTTCGATCTGCTCC
65 AGAT-CTGATCTTCGATCTGCTCC
* **
97671792 GCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAA
1 GCTGTAATCTCAGGGAGATAAGATCTCTGACTTCAATCCACTCCACTGTAACCTCAGGGAGATAA
* * *
97671857 GATCTGAAATTCTTTGGTCTGTTCC
66 GATCTG--A-TCTTCGATCTGCTCC
* * ** * * *
97671882 ACTGTAATCTCAGGGAGATAAGA-C-CTGA-TGT-GATCTTCTCTACTGTAACTTCAGAGAGATA
1 GCTGTAATCTCAGGGAGATAAGATCTCTGACT-TCAATCCACTCCACTGTAACCTCAGGGAGATA
** *
97671943 AGATC----CTTTAATCCGCTCC
65 AGATCTGATCTTCGATCTGCTCC
** * * ** ** * *
97671962 ATTGTAATCTCAAGGAGATAGGAT-TACT-ATCTTTGATCTGCTCCGCTGTAATCTCAGGGAGAT
1 GCTGTAATCTCAGGGAGATAAGATCT-CTGA-CTTCAATCCACTCCACTGTAACCTCAGGGAGAT
* * *
97672025 AAGATCTGAAATTCTTTGGTCTGTTCC
64 AAGATCTG--A-TCTTCGATCTGCTCC
*
97672052 ACTGTAATCTCAGGGAGATAAGA
1 GCTGTAATCTCAGGGAGATAAGA
97672075 CCTGTATTAT
Statistics
Matches: 223, Mismatches: 41, Indels: 35
0.75 0.14 0.12
Matches are distributed among these distances:
80 30 0.13
81 1 0.00
82 3 0.01
83 30 0.13
86 3 0.01
87 87 0.39
88 4 0.02
89 1 0.00
90 64 0.29
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (87 bp):
GCTGTAATCTCAGGGAGATAAGATCTCTGACTTCAATCCACTCCACTGTAACCTCAGGGAGATAA
GATCTGATCTTCGATCTGCTCC
Found at i:97671897 original size:46 final size:45
Alignment explanation
Indices: 97671745--97672074 Score: 239
Period size: 44 Copynumber: 7.6 Consensus size: 45
97671735 TTTTAATCCA
* * *
97671745 CTCCACTGTAA-CTTCAGGGAGATAGGA--T-AGTGTCTTCGATCTG
1 CTCCACTGTAATC-TCAGGGAGATAAGATCTGAAT-TCTTTGATCTG
* * * **
97671788 CTCCGCTGTAATCTCAGGGAGATAAGATCT--CTGGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGAAT-TCTTTGATCTG
* *
97671832 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTG-AATTCTTTGATCTG
* * * *
97671878 TTCCACTGTAATCTCAGGGAGATAAGACCTG-A---TGTGATCTT
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGAATTCTTTGATCTG
* * * *
97671919 CTCTACTGTAA-CTTCAGAGAGATAAGATC------CTTTAATCCG
1 CTCCACTGTAATC-TCAGGGAGATAAGATCTGAATTCTTTGATCTG
* * * *
97671958 CTCCATTGTAATCTCAAGGAGATAGGAT-T-ACTATCTTTGATCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTGAAT-TCTTTGATCTG
* *
97672002 CTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTTGGTCTG
1 CTCCACTGTAATCTCAGGGAGATAAGATCTG-AATTCTTTGATCTG
*
97672048 TTCCACTGTAATCTCAGGGAGATAAGA
1 CTCCACTGTAATCTCAGGGAGATAAGA
97672075 CCTGTATTAT
Statistics
Matches: 228, Mismatches: 41, Indels: 33
0.75 0.14 0.11
Matches are distributed among these distances:
39 26 0.11
40 2 0.01
41 29 0.13
43 23 0.10
44 73 0.32
45 2 0.01
46 70 0.31
47 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (45 bp):
CTCCACTGTAATCTCAGGGAGATAAGATCTGAATTCTTTGATCTG
Found at i:97687880 original size:24 final size:25
Alignment explanation
Indices: 97687853--97687901 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
97687843 AACACTTTAG
*
97687853 TAATTAATTAT-AATATTATAAAAA
1 TAATTAATGATAAATATTATAAAAA
*
97687877 TAATTAATGATAAATATTTTAAAAA
1 TAATTAATGATAAATATTATAAAAA
97687902 CTTAAATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 10 0.45
25 12 0.55
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (25 bp):
TAATTAATGATAAATATTATAAAAA
Found at i:97687930 original size:31 final size:31
Alignment explanation
Indices: 97687886--97687977 Score: 93
Period size: 31 Copynumber: 3.0 Consensus size: 31
97687876 ATAATTAATG
*
97687886 ATAAA-TATTTTAAA-AACTTAAATATAGATA
1 ATAAATTATATTAAATAA-TTAAATATAGATA
* *
97687916 ATAAATTATATTAAATAATTATAATACA-A-G
1 ATAAATTATATTAAATAATTA-AATATAGATA
97687946 ATAAATTATATTTAAATAATTTAAATATAGAT
1 ATAAATTATA-TTAAATAA-TTAAATATAGAT
97687978 GGTACAAAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
30 15 0.29
31 25 0.49
32 11 0.22
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.39
Consensus pattern (31 bp):
ATAAATTATATTAAATAATTAAATATAGATA
Found at i:97693840 original size:14 final size:15
Alignment explanation
Indices: 97693823--97693855 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
97693813 GAATAACTTA
*
97693823 TTTTAACA-CTGTAT
1 TTTTAACAGCTATAT
97693837 TTTTAACAGCTATAT
1 TTTTAACAGCTATAT
97693852 TTTT
1 TTTT
97693856 TACTCTATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.27, C:0.12, G:0.06, T:0.55
Consensus pattern (15 bp):
TTTTAACAGCTATAT
Found at i:97700460 original size:1 final size:1
Alignment explanation
Indices: 97700454--97700485 Score: 55
Period size: 1 Copynumber: 32.0 Consensus size: 1
97700444 CTATCGTTAC
*
97700454 AAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
97700486 TAAAGAACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 29 1.00
ACGTcount: A:0.97, C:0.00, G:0.03, T:0.00
Consensus pattern (1 bp):
A
Found at i:97704208 original size:3 final size:3
Alignment explanation
Indices: 97704200--97704239 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
97704190 ACTCAATCAC
97704200 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
97704240 TAGGTTATGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:97704278 original size:15 final size:15
Alignment explanation
Indices: 97704258--97704314 Score: 82
Period size: 15 Copynumber: 3.9 Consensus size: 15
97704248 GTATGATAGA
97704258 TTAAAAAATTAAGTG
1 TTAAAAAATTAAGTG
*
97704273 TTAAAAAAATAAGTG
1 TTAAAAAATTAAGTG
*
97704288 TT-AAAAA-TAAGTA
1 TTAAAAAATTAAGTG
97704301 TTAAAAAATTAAGT
1 TTAAAAAATTAAGT
97704315 ATTGAATTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.18
14 10 0.26
15 21 0.55
ACGTcount: A:0.58, C:0.00, G:0.11, T:0.32
Consensus pattern (15 bp):
TTAAAAAATTAAGTG
Found at i:97704293 original size:13 final size:13
Alignment explanation
Indices: 97704261--97704307 Score: 58
Period size: 13 Copynumber: 3.4 Consensus size: 13
97704251 TGATAGATTA
97704261 AAAAATTAAGTGTT
1 AAAAA-TAAGTGTT
97704275 AAAAAAATAAGTGTT
1 --AAAAATAAGTGTT
*
97704290 AAAAATAAGTATT
1 AAAAATAAGTGTT
97704303 AAAAA
1 AAAAA
97704308 ATTAAGTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
13 17 0.57
15 8 0.27
16 5 0.17
ACGTcount: A:0.62, C:0.00, G:0.11, T:0.28
Consensus pattern (13 bp):
AAAAATAAGTGTT
Found at i:97704306 original size:12 final size:13
Alignment explanation
Indices: 97704277--97704317 Score: 55
Period size: 13 Copynumber: 3.0 Consensus size: 13
97704267 TAAGTGTTAA
*
97704277 AAAAATAAGTGTT
1 AAAAATAAGTATT
97704290 AAAAATAAGTATT
1 AAAAATAAGTATT
97704303 AAAAAATTAAGTATT
1 -AAAAA-TAAGTATT
97704318 GAATTTAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 12 0.48
14 5 0.20
15 8 0.32
ACGTcount: A:0.59, C:0.00, G:0.10, T:0.32
Consensus pattern (13 bp):
AAAAATAAGTATT
Found at i:97707558 original size:15 final size:15
Alignment explanation
Indices: 97707540--97707582 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
97707530 CACTGTCGAA
97707540 TTCATCATCATCTAC
1 TTCATCATCATCTAC
* * *
97707555 TTCATCCTCCTCTTC
1 TTCATCATCATCTAC
*
97707570 TTCATCAGCATCT
1 TTCATCATCATCT
97707583 GAAAAGTAAG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.19, C:0.37, G:0.02, T:0.42
Consensus pattern (15 bp):
TTCATCATCATCTAC
Found at i:97709338 original size:20 final size:20
Alignment explanation
Indices: 97709315--97709353 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
97709305 CGATAAATCT
97709315 TAAAATTACAAGTGAATTTC
1 TAAAATTACAAGTGAATTTC
**
97709335 TAAAATTACTCGTGAATTT
1 TAAAATTACAAGTGAATTT
97709354 ACATTAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.38
Consensus pattern (20 bp):
TAAAATTACAAGTGAATTTC
Found at i:97710146 original size:55 final size:55
Alignment explanation
Indices: 97710047--97710153 Score: 162
Period size: 55 Copynumber: 1.9 Consensus size: 55
97710037 CCAAAAGTGC
* *
97710047 TTTTACACCCAAAAGGATAATTGATTTTTAGGGTCAAAATTACGGTGAAAAATTG
1 TTTTACACCCAAAAGGATAACTGATTTTTAGGGTCAAAACTACGGTGAAAAATTG
* *
97710102 TTTTACACCGAGAAGGATAACTGATTTTT-GGGTCAAAAACTACGGTGAAAAA
1 TTTTACACCCAAAAGGATAACTGATTTTTAGGGTC-AAAACTACGGTGAAAAA
97710154 ATATTTTTCT
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
54 5 0.11
55 42 0.89
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (55 bp):
TTTTACACCCAAAAGGATAACTGATTTTTAGGGTCAAAACTACGGTGAAAAATTG
Found at i:97710328 original size:31 final size:31
Alignment explanation
Indices: 97710288--97710379 Score: 118
Period size: 30 Copynumber: 3.0 Consensus size: 31
97710278 TATTTTGTAC
97710288 CATTATATTAAATTATTTAAATATAATTTAT
1 CATTATATTAAATTATTTAAATATAATTTAT
*
97710319 CATTGTATTAAATTATTT-AATATAATTTAT
1 CATTATATTAAATTATTTAAATATAATTTAT
* * *
97710349 TATTATATTTAAGTT-TTTAAA-ATATTTTAT
1 CATTATA-TTAAATTATTTAAATATAATTTAT
97710379 C
1 C
97710380 TATAATTATT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
30 28 0.53
31 25 0.47
ACGTcount: A:0.40, C:0.03, G:0.02, T:0.54
Consensus pattern (31 bp):
CATTATATTAAATTATTTAAATATAATTTAT
Found at i:97710411 original size:26 final size:26
Alignment explanation
Indices: 97710362--97710413 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
97710352 TATATTTAAG
* *
97710362 TTTTTAAAATATTTTATCTATAATTA
1 TTTTTAAAATACTTTATATATAATTA
97710388 TTTTTATAAATACTTTATAT-TAATTA
1 TTTTTA-AAATACTTTATATATAATTA
97710414 CTTAAAAGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 12 0.52
27 11 0.48
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (26 bp):
TTTTTAAAATACTTTATATATAATTA
Found at i:97715681 original size:30 final size:30
Alignment explanation
Indices: 97715622--97715682 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
97715612 ATGTTTTATT
* * *
97715622 AAAAACATAGAGTTATCATACATGAATTTA
1 AAAAACATAAAATTATAATACATGAATTTA
* *
97715652 AAAAACATAAAATTATAATACTTGGATTTA
1 AAAAACATAAAATTATAATACATGAATTTA
97715682 A
1 A
97715683 TCCTACTTGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.52, C:0.08, G:0.08, T:0.31
Consensus pattern (30 bp):
AAAAACATAAAATTATAATACATGAATTTA
Found at i:97716913 original size:42 final size:42
Alignment explanation
Indices: 97716850--97716976 Score: 170
Period size: 42 Copynumber: 3.0 Consensus size: 42
97716840 CTTCGTTTTC
** * *
97716850 TCGATGCCATAGTTCAACTATGGTCTTACACATCTTCACATAA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACAT-A
*
97716893 T-GATGCCATAGCCCAGCTATGGTCTTACACATATTCATATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
97716934 TCGATGCCATAGCCCAGCTATGGTCTTACACGA-A-TCACATA
1 TCGATGCCATAGCCCAGCTATGGTCTTACAC-ATATTCACATA
97716975 TC
1 TC
97716977 TCACTGATGC
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
41 10 0.13
42 64 0.84
43 2 0.03
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (42 bp):
TCGATGCCATAGCCCAGCTATGGTCTTACACATATTCACATA
Found at i:97717036 original size:47 final size:46
Alignment explanation
Indices: 97716935--97717058 Score: 158
Period size: 47 Copynumber: 2.7 Consensus size: 46
97716925 ATTCATATAT
* * * * *
97716935 CGATGCCATAGCCCAGCTATGGTCTTACACGAATCACATATCTCAC
1 CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
* * * *
97716981 TGATGCCATATCTCAGATATGGTCTTATACAGTAGCATATATCACAC
1 CGATGCCATATCCCAGATATGGTCTTATAC-GAAGCACATATCACAC
97717028 CGATGCCATATCCCAGATATGGTCTTATACG
1 CGATGCCATATCCCAGATATGGTCTTATACG
97717059 GAAATCACTT
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
46 26 0.39
47 40 0.61
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (46 bp):
CGATGCCATATCCCAGATATGGTCTTATACGAAGCACATATCACAC
Found at i:97717111 original size:31 final size:31
Alignment explanation
Indices: 97717076--97717224 Score: 217
Period size: 31 Copynumber: 4.8 Consensus size: 31
97717066 CTTGTCACTT
*
97717076 GTAGCCGAAGCTACCACTATTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * * *
97717107 GTAGCCGGAGCTATCATTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
97717138 GTAGCCGGAGCTACCACTTTTCACTGATTAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
97717169 GTAGCAGAAGCTACCACTTTTCACTAATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
97717200 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
97717225 TGTCATTTGT
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 106 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:97717295 original size:50 final size:51
Alignment explanation
Indices: 97717200--97717328 Score: 224
Period size: 50 Copynumber: 2.5 Consensus size: 51
97717190 CACTAATCAG
* *
97717200 GTAGCCGAAGCTACCACTTTTCACTTGTCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAGATAAGT
*
97717251 GTAGCCGAAGCTATTACTTATCACTT-TCATTTGTCCTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAGATAAGT
97717301 GTAGCCGAAGCTATCACTTATCACTTGT
1 GTAGCCGAAGCTATCACTTATCACTTGT
97717329 TGCCATGGTC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
50 49 0.67
51 24 0.33
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGTCATTTGTCCTTGATCAGATAAGT
Found at i:97727956 original size:7 final size:7
Alignment explanation
Indices: 97727935--97727978 Score: 70
Period size: 7 Copynumber: 6.3 Consensus size: 7
97727925 TACACTTATC
*
97727935 TGATTAG
1 TGATAAG
*
97727942 TGACAAG
1 TGATAAG
97727949 TGATAAG
1 TGATAAG
97727956 TGATAAG
1 TGATAAG
97727963 TGATAAG
1 TGATAAG
97727970 TGATAAG
1 TGATAAG
97727977 TG
1 TG
97727979 GTAGCTTCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.39, C:0.02, G:0.30, T:0.30
Consensus pattern (7 bp):
TGATAAG
Found at i:97728000 original size:65 final size:65
Alignment explanation
Indices: 97727891--97728019 Score: 213
Period size: 65 Copynumber: 2.0 Consensus size: 65
97727881 TGAGTACTTC
* * * *
97727891 TGATCAGTGACAAGTGATAAGTGGTAGCTTTAGTTACACTTATCTGATTAGTGACAAGTGATAAG
1 TGATAAGTGACAAGTGATAAGTGGTAGCTTCAGCTACACTTATCTGATCAGTGACAAGTGATAAG
*
97727956 TGATAAGTGATAAGTGATAAGTGGTAGCTTCAGCTACACTTATCTGATCAGTGACAAGTGATAA
1 TGATAAGTGACAAGTGATAAGTGGTAGCTTCAGCTACACTTATCTGATCAGTGACAAGTGATAA
97728020 ATGTGATCAG
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
65 59 1.00
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (65 bp):
TGATAAGTGACAAGTGATAAGTGGTAGCTTCAGCTACACTTATCTGATCAGTGACAAGTGATAAG
Found at i:97728368 original size:42 final size:42
Alignment explanation
Indices: 97728309--97728394 Score: 172
Period size: 42 Copynumber: 2.0 Consensus size: 42
97728299 GTAAGATTTA
97728309 TGTTTTATGCCTATGAACTTACTAAGCTTCTATAAGCTTACT
1 TGTTTTATGCCTATGAACTTACTAAGCTTCTATAAGCTTACT
97728351 TGTTTTATGCCTATGAACTTACTAAGCTTCTATAAGCTTACT
1 TGTTTTATGCCTATGAACTTACTAAGCTTCTATAAGCTTACT
97728393 TG
1 TG
97728395 AATGTATTCA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.26, C:0.19, G:0.13, T:0.43
Consensus pattern (42 bp):
TGTTTTATGCCTATGAACTTACTAAGCTTCTATAAGCTTACT
Found at i:97729020 original size:18 final size:18
Alignment explanation
Indices: 97728997--97729031 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
97728987 GAAAAGTGGT
97728997 CTAAATACTTTGTATAGG
1 CTAAATACTTTGTATAGG
97729015 CTAAATACTTTGTATAG
1 CTAAATACTTTGTATAG
97729032 ACTCGACTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.40
Consensus pattern (18 bp):
CTAAATACTTTGTATAGG
Found at i:97731397 original size:23 final size:23
Alignment explanation
Indices: 97731360--97731415 Score: 94
Period size: 23 Copynumber: 2.3 Consensus size: 23
97731350 ATTTACGAAT
97731360 TTAAGTGAGATTAATTAGATTTTAG
1 TTAAGT-A-ATTAATTAGATTTTAG
97731385 TTAAGTAATTAATTAGATTTTAG
1 TTAAGTAATTAATTAGATTTTAG
97731408 TTAAGTAA
1 TTAAGTAA
97731416 ATCTAGTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
23 24 0.77
24 1 0.03
25 6 0.19
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (23 bp):
TTAAGTAATTAATTAGATTTTAG
Found at i:97731822 original size:35 final size:36
Alignment explanation
Indices: 97731758--97731833 Score: 93
Period size: 35 Copynumber: 2.1 Consensus size: 36
97731748 CATTAAATGT
* *
97731758 CCAATTTTAAAACCCAAAACATTACAAACCC-AAAC
1 CCAAATTTAAAACCCAAAACAATACAAACCCTAAAC
* *
97731793 CCAAATTTAAAACCCAAAATTAATA-AAACCCTAAGC
1 CCAAATTTAAAACCCAAAA-CAATACAAACCCTAAAC
97731829 CCAAA
1 CCAAA
97731834 AAGGGCCCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
35 24 0.69
36 11 0.31
ACGTcount: A:0.53, C:0.29, G:0.01, T:0.17
Consensus pattern (36 bp):
CCAAATTTAAAACCCAAAACAATACAAACCCTAAAC
Found at i:97741078 original size:27 final size:27
Alignment explanation
Indices: 97741047--97741100 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
97741037 TTTCAATAAA
97741047 ATAATACAATTTAAT-ATAAAAT-ATCTT
1 ATAATA-AA-TTAATAATAAAATAATCTT
97741074 ATAATAAATTAATAATAAAATAATCTT
1 ATAATAAATTAATAATAAAATAATCTT
97741101 TCAATCATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 5 0.20
26 9 0.36
27 11 0.44
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.39
Consensus pattern (27 bp):
ATAATAAATTAATAATAAAATAATCTT
Found at i:97746878 original size:23 final size:23
Alignment explanation
Indices: 97746844--97746896 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
97746834 AAGTTGTGAA
97746844 CTGTTAAGTCTGTTACAACTACTT
1 CTGTT-AGTCTGTTACAACTACTT
97746868 CTGTTAGTCTGTTACAACTACTT
1 CTGTTAGTCTGTTACAACTACTT
97746891 CTGTTA
1 CTGTTA
97746897 AACAGTTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 24 0.83
24 5 0.17
ACGTcount: A:0.23, C:0.21, G:0.13, T:0.43
Consensus pattern (23 bp):
CTGTTAGTCTGTTACAACTACTT
Found at i:97748983 original size:21 final size:22
Alignment explanation
Indices: 97748959--97749003 Score: 74
Period size: 21 Copynumber: 2.1 Consensus size: 22
97748949 CTGCTCAAAA
*
97748959 TCCACCTGCTGCGGAGTAC-AC
1 TCCACCTGCTGCGAAGTACTAC
97748980 TCCACCTGCTGCGAAGTACTAC
1 TCCACCTGCTGCGAAGTACTAC
97749002 TC
1 TC
97749004 ACTCCTTCTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.20, C:0.38, G:0.20, T:0.22
Consensus pattern (22 bp):
TCCACCTGCTGCGAAGTACTAC
Found at i:97752868 original size:27 final size:27
Alignment explanation
Indices: 97752851--97753028 Score: 133
Period size: 27 Copynumber: 6.6 Consensus size: 27
97752841 ATATTAAGTC
97752851 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
97752878 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
97752906 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *** ** *
97752933 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * **
97752960 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTCAGTGCTAT-ATAATCAACT
* * * * *
97752987 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
*
97753014 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
97753029 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 104 0.79
28 27 0.21
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:97752990 original size:54 final size:54
Alignment explanation
Indices: 97752851--97753027 Score: 214
Period size: 54 Copynumber: 3.3 Consensus size: 54
97752841 ATATTAAGTC
* * *
97752851 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAA-T
* ** * *
97752906 CGCACACTTAGTGC-TACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* **
97752960 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
97753014 CGCACACTTAGTGC
1 CGCACACTTAGTGC
97753028 TGTACAATTT
Statistics
Matches: 105, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
53 1 0.01
54 60 0.57
55 44 0.42
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:97753017 original size:81 final size:82
Alignment explanation
Indices: 97752872--97753027 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 82
97752862 TGCTATATAA
* *
97752872 TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
97752937 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * **
97752954 TCAATTCGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
97753017 ACACTTAGTGC
65 ACACTTAGTGC
97753028 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 42 0.63
82 25 0.37
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:97760804 original size:27 final size:27
Alignment explanation
Indices: 97760787--97760964 Score: 133
Period size: 27 Copynumber: 6.6 Consensus size: 27
97760777 ATATTAAGTC
97760787 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
97760814 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
97760842 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *** ** *
97760869 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
* * **
97760896 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTCAGTGCTAT-ATAATCAACT
* * * * *
97760923 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTCAGTGCTATATAATCAACT
*
97760950 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
97760965 GTACAATTTA
Statistics
Matches: 131, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 104 0.79
28 27 0.21
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:97760926 original size:54 final size:54
Alignment explanation
Indices: 97760787--97760963 Score: 214
Period size: 54 Copynumber: 3.3 Consensus size: 54
97760777 ATATTAAGTC
* * *
97760787 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAA-T
* ** * *
97760842 CGCACACTTAGTGC-TACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
* **
97760896 CGCACACTTAGTGCATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
97760950 CGCACACTTAGTGC
1 CGCACACTTAGTGC
97760964 TGTACAATTT
Statistics
Matches: 105, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
53 1 0.01
54 60 0.57
55 44 0.42
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCAACATAGTCAAAT
Found at i:97760953 original size:81 final size:82
Alignment explanation
Indices: 97760808--97760963 Score: 235
Period size: 81 Copynumber: 1.9 Consensus size: 82
97760798 TGCTATATAA
* *
97760808 TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
97760873 CACTTAGTGCCGCATGG
66 CACTTAGTGCCGCATGG
* * **
97760890 TCAATTCGCACACTTAGTGC-ATCATATTC-ATTTCGCACACTTAGTGCAACATAGTCAAATCGC
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGC
97760953 ACACTTAGTGC
65 ACACTTAGTGC
97760964 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 42 0.63
82 25 0.37
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.27
Consensus pattern (82 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCAACATAGTCAAATCGCA
CACTTAGTGCCGCATGG
Found at i:97764922 original size:21 final size:21
Alignment explanation
Indices: 97764898--97764939 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
97764888 CTTTTTAATT
97764898 AATTGACTAACGAAACGTTAA
1 AATTGACTAACGAAACGTTAA
** *
97764919 AATTTTCTAACGAAACTTTAA
1 AATTGACTAACGAAACGTTAA
97764940 TACTAACTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.31
Consensus pattern (21 bp):
AATTGACTAACGAAACGTTAA
Found at i:97770915 original size:16 final size:16
Alignment explanation
Indices: 97770894--97770926 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
97770884 TGCTGTTAAA
97770894 ACCCAACAATTTTATC
1 ACCCAACAATTTTATC
97770910 ACCCAACAATTTTATC
1 ACCCAACAATTTTATC
97770926 A
1 A
97770927 AGCACGACGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.39, C:0.30, G:0.00, T:0.30
Consensus pattern (16 bp):
ACCCAACAATTTTATC
Found at i:97775274 original size:22 final size:22
Alignment explanation
Indices: 97775257--97775304 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
97775247 TGTTTTCTCC
*
97775257 TTATTTTGTTACCATTTTACTA
1 TTATGTTGTTACCATTTTACTA
* *
97775279 TTATGTTGTTACTATTTTATTA
1 TTATGTTGTTACCATTTTACTA
97775301 TTAT
1 TTAT
97775305 TGTTTGGATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.23, C:0.08, G:0.06, T:0.62
Consensus pattern (22 bp):
TTATGTTGTTACCATTTTACTA
Found at i:97780099 original size:16 final size:16
Alignment explanation
Indices: 97780046--97780108 Score: 53
Period size: 15 Copynumber: 4.1 Consensus size: 16
97780036 ATATAATTTT
*
97780046 TTAAA-TATTTTATAA
1 TTAAATTATTTTATTA
* *
97780061 TTACATTAATTACTATT-
1 TTAAATT-ATT-TTATTA
97780078 TT-AATTATTTTATTA
1 TTAAATTATTTTATTA
97780093 TTAAATTATTTT-TTA
1 TTAAATTATTTTATTA
97780108 T
1 T
97780109 ATTTTAATTA
Statistics
Matches: 38, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
14 4 0.11
15 13 0.34
16 13 0.34
17 5 0.13
18 3 0.08
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (16 bp):
TTAAATTATTTTATTA
Found at i:97780117 original size:18 final size:17
Alignment explanation
Indices: 97780074--97780124 Score: 59
Period size: 16 Copynumber: 2.9 Consensus size: 17
97780064 CATTAATTAC
*
97780074 TATTTTAATTATTTTAT
1 TATTTTAATTATTTTTT
*
97780091 TA-TTAAATTATTTTTT
1 TATTTTAATTATTTTTT
97780107 ATATTTTAATTATCTTTT
1 -TATTTTAATTAT-TTTT
97780125 GATAATAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
16 12 0.43
17 4 0.14
18 8 0.29
19 4 0.14
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (17 bp):
TATTTTAATTATTTTTT
Found at i:97784084 original size:23 final size:22
Alignment explanation
Indices: 97784057--97784099 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
97784047 ATTTAAACTC
97784057 AATTAATT-TTATATTATTTTATA
1 AATTAATTATTAT-TT-TTTTATA
97784080 AATTAATTATTATTTTTTTA
1 AATTAATTATTATTTTTTTA
97784100 AATCTTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 5 0.26
23 10 0.53
24 4 0.21
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (22 bp):
AATTAATTATTATTTTTTTATA
Found at i:97788561 original size:16 final size:16
Alignment explanation
Indices: 97788520--97788561 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
97788510 AAAAGAAATT
*
97788520 TGAAATAAATAATGTA
1 TGAAATAAATTATGTA
* *
97788536 TAAAAT-AATTTTGTA
1 TGAAATAAATTATGTA
97788551 TGAAATAAATT
1 TGAAATAAATT
97788562 GATTTGGATT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (16 bp):
TGAAATAAATTATGTA
Found at i:97790765 original size:176 final size:176
Alignment explanation
Indices: 97790354--97791708 Score: 1427
Period size: 176 Copynumber: 7.6 Consensus size: 176
97790344 AAATAGGACC
* * * *
97790354 GGTGGCTTAAATTTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCCTCGCTCTGCTCCA
1 GGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCA
* *
97790419 CAACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAAGAAGATAAG
66 CAACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAAG
* * * * *
97790484 ATTACAATCGCCAACCTGCTCTATTTCTACCT-AG-GAGATAATGCT
131 ACTATAATC-CCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCT
* * * *
97790529 AGTGGCTAAAATCTGCTCGATTGCCGATATATGGAGATAAGATTCGCCATCTTCGATCTACTCCA
1 GGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCA
* * * * * *
97790594 CAACTGCGTAGGGAGATAAAATTTTCAATTTTCAGTCTACTTCCTTGCTACCTCAAGAAGATAAA
66 CAACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAAG
97790659 ACTATAATCCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCT
131 ACTATAATCCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCT
* * * * * *
97790705 GGTGGCTAAAATTTACTCTATTGCCGATACATGGAGATAAGATTTGCCATCTTTGATCTACTCCA
1 GGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCA
* * * * *
97790770 CAGCTGCTCAAGGAGATAAGATCTTCAATCTTCAGTCTTTAGTCTGCTCCACTGCAACCTCA-GA
66 CAACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTC--TA--CT--TCC-TTGCTACCTCAGGA
* ** * * *
97790834 GAGATAAGACTTGTATAT-TGAGCCTGCTC-CACTG-TAACTTCAGAGAGATAAGGCT
124 -AGATAAGAC-TATA-ATCCCAACCTGCTCTC-TTGCT-ACCTCAGAGAGATAAGGCT
* * * * ** * * *
97790889 TGTGGCTTAAATCTACTCCATTACCGATACATAAAGATAAGATTCACCATCTTTGGTCTGCTCCA
1 GGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCA
* ** * *
97790954 CTACAACTTCAGGGAGATAAGACCTTCAATCTTCAGTCTGCTTCCTTGCTACCTCAGGAAGATAA
66 CAACTGCTT-AGGGAGATAAGATCTTCAATCTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAA
* * **
97791019 GACT-TCAAACTTCAACCTGCTCTCTTGCTACCTCAGAGAGATAAAACT
130 GACTAT-AATC-CCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCT
* * *
97791067 GGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGGTTCGTCATCTTCGATCTGCTCTA
1 GGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCA
* *
97791132 TAACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTACTTCCTTGCTACATCAGGAAGATAAG
66 CAACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAAG
* * * *
97791197 ACTACAAACGCCAACCTGCTCTCTTGCTACCT-TGGGAGATAAGGCT
131 ACTATAATC-CCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCT
* * * * *
97791243 AGTGGCTAAAATCTGCTCTATTGCCAATACATAGAGATAAGATTCGCCATCTTTGATCTGCTCCA
1 GGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCA
* * *
97791308 CAACTGCTTAGGGAGATAAAATCTTTAATCTTCAGTCTACTTCCTTGTTACCTCAGGAAGATAAG
66 CAACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAAG
* * *
97791373 ACTAGAATCCCAGCCTACTCTCTTGCTACCTCAGAGAGATAAGGCT
131 ACTATAATCCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCT
* * * * *
97791419 GGTGGTTAAAATCTGCTCCATTACCGATACATGGAGATAAGACTCGCCATATTCGATCTACTCCA
1 GGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCA
* * * * * * *
97791484 TAGCTGCTTAAGGAGATAAGATCTTCAATCTTCAGTCTGC-TCCACTGCAACCTCAGGGAGATAA
66 CAACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTACTTCC-TTGCTACCTCAGGAAGATAA
* ** * * * * * *
97791548 GACTTGTATAT-TGAGCCTACTC-CACTGCAACTTCAGGGAGATAAGGCT
130 GAC-TATA-ATCCCAACCTGCTCTC-TTGCTACCTCAGAGAGATAAGGCT
* * * ** * * *
97791596 TGTGGCTTAAATCTACTTTATTGCCGATACATGGAGATAAGATTCACCATCTTTGGTCTGCTCCA
1 GGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCA
** ** * * *
97791661 CTGCAACTTCAAGGAGATAAGACCTTCAATCTTCAGTCTGCTTCCTTG
66 CAACTGCTT-AGGGAGATAAGATCTTCAATCTTCAGTCTACTTCCTTG
97791709 GTGGCTAAAA
Statistics
Matches: 989, Mismatches: 162, Indels: 55
0.82 0.13 0.05
Matches are distributed among these distances:
174 20 0.02
175 148 0.15
176 355 0.36
177 171 0.17
178 139 0.14
179 10 0.01
180 2 0.00
181 2 0.00
182 5 0.01
183 20 0.02
184 89 0.09
185 28 0.03
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (176 bp):
GGTGGCTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTCGCCATCTTCGATCTGCTCCA
CAACTGCTTAGGGAGATAAGATCTTCAATCTTCAGTCTACTTCCTTGCTACCTCAGGAAGATAAG
ACTATAATCCCAACCTGCTCTCTTGCTACCTCAGAGAGATAAGGCT
Found at i:97791011 original size:45 final size:44
Alignment explanation
Indices: 97790962--97791062 Score: 132
Period size: 44 Copynumber: 2.3 Consensus size: 44
97790952 CACTACAACT
* **
97790962 TCAGGGAGATAAGACCTTCAATCTTCAGTCTGCT-TCCTTGCTACC
1 TCAGGGAGATAAGA-CTTCAAACTTCAACCTGCTCT-CTTGCTACC
*
97791007 TCAGGAAGATAAGACTTCAAACTTCAACCTGCTCTCTTGCTACC
1 TCAGGGAGATAAGACTTCAAACTTCAACCTGCTCTCTTGCTACC
*
97791051 TCAGAGAGATAA
1 TCAGGGAGATAA
97791063 AACTGGTGGC
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
44 35 0.71
45 14 0.29
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.28
Consensus pattern (44 bp):
TCAGGGAGATAAGACTTCAAACTTCAACCTGCTCTCTTGCTACC
Found at i:97791612 original size:44 final size:44
Alignment explanation
Indices: 97791523--97791612 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
97791513 CTTCAGTCTG
* * *
97791523 CTCCACTGCAACCTCAGGGAGATAAGACTTGTATATTGAGCCTA
1 CTCCACTGCAACCTCAGGGAGATAAGACTTGTAGATTAAACCTA
* * * * *
97791567 CTCCACTGCAACTTCAGGGAGATAAGGCTTGTGGCTTAAATCTA
1 CTCCACTGCAACCTCAGGGAGATAAGACTTGTAGATTAAACCTA
97791611 CT
1 CT
97791613 TTATTGCCGA
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (44 bp):
CTCCACTGCAACCTCAGGGAGATAAGACTTGTAGATTAAACCTA
Found at i:97792256 original size:64 final size:64
Alignment explanation
Indices: 97792154--97792408 Score: 375
Period size: 64 Copynumber: 4.0 Consensus size: 64
97792144 TTCATGTATC
* * * * * * *
97792154 ATGCTTATGCCAAATAATTAGGATGTTATTATCAAAATGAATCAAATACTCCTTACTAGATGTG
1 ATGCTGATGTCAAATAATTAGGACGCTATGATCGAAATGAATCAAATACTCCTAACTAGATGTG
* * * *
97792218 ATGCTGATGTTAAATAATTAGGACACTATGATCGAAATGAATCAAATGCTCCTAACTAGATATG
1 ATGCTGATGTCAAATAATTAGGACGCTATGATCGAAATGAATCAAATACTCCTAACTAGATGTG
*
97792282 ATGTTGATGTCAAATAATTAGGACGCTATGATCGAAATGAATCAAATACTCCTAACTAGATGTG
1 ATGCTGATGTCAAATAATTAGGACGCTATGATCGAAATGAATCAAATACTCCTAACTAGATGTG
* * *
97792346 ATGCTTATGTCAAATAATTAGGATGCTATGATCGAAATGAATCAAATGCTCCTAACTAGATGT
1 ATGCTGATGTCAAATAATTAGGACGCTATGATCGAAATGAATCAAATACTCCTAACTAGATGT
97792409 ATTATGAATG
Statistics
Matches: 171, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
64 171 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (64 bp):
ATGCTGATGTCAAATAATTAGGACGCTATGATCGAAATGAATCAAATACTCCTAACTAGATGTG
Found at i:97793558 original size:16 final size:15
Alignment explanation
Indices: 97793525--97793573 Score: 57
Period size: 16 Copynumber: 3.3 Consensus size: 15
97793515 TTCTTTTTTA
*
97793525 TTTTTT-ATT-TTAT
1 TTTTTTGATTATTCT
97793538 TTTTTTGATTGATTCT
1 TTTTTTGATT-ATTCT
*
97793554 TTTTTTGATTTTTCT
1 TTTTTTGATTATTCT
97793569 TTTTT
1 TTTTT
97793574 CGTTTTGATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
13 6 0.19
14 3 0.10
15 9 0.29
16 13 0.42
ACGTcount: A:0.10, C:0.04, G:0.06, T:0.80
Consensus pattern (15 bp):
TTTTTTGATTATTCT
Found at i:97793566 original size:36 final size:38
Alignment explanation
Indices: 97793512--97793584 Score: 89
Period size: 36 Copynumber: 2.0 Consensus size: 38
97793502 CTCATTTTCT
* *
97793512 TTCTTCTTTTTTATTTTTTATTTTATT-TTTTTGATTGA
1 TTCTTCTTTTTGATTTTTTATTTT-TTCGTTTTGATTGA
*
97793550 TTCTT-TTTTTGA-TTTTTCTTTTTTCGTTTTGATTG
1 TTCTTCTTTTTGATTTTTTATTTTTTCGTTTTGATTG
97793585 TGATTTTTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
35 2 0.06
36 18 0.58
37 6 0.19
38 5 0.16
ACGTcount: A:0.10, C:0.07, G:0.08, T:0.75
Consensus pattern (38 bp):
TTCTTCTTTTTGATTTTTTATTTTTTCGTTTTGATTGA
Found at i:97795092 original size:19 final size:18
Alignment explanation
Indices: 97795045--97795093 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
97795035 AGTATATTTT
*
97795045 AAAAAAATAGTCTAAAGAA
1 AAAAAAATA-TATAAAGAA
97795064 AAAAAGAATATATAAAGAA
1 AAAAA-AATATATAAAGAA
*
97795083 TGAAAAAATAT
1 -AAAAAAATAT
97795094 TTATTCAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 18 0.69
20 8 0.31
ACGTcount: A:0.69, C:0.02, G:0.10, T:0.18
Consensus pattern (18 bp):
AAAAAAATATATAAAGAA
Found at i:97803212 original size:31 final size:31
Alignment explanation
Indices: 97803174--97803353 Score: 254
Period size: 31 Copynumber: 5.8 Consensus size: 31
97803164 ACAAATGACA
* *
97803174 AGTGAAAAGTGGTAGCTTCAGCTACTTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
**
97803205 AGTGAAAAGTGGTAGCTTTTGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
97803236 AGTGAAAAGTGATAG-TTCCGGCTACATGATC
1 AGTGAAAAGTGGTAGCTT-CGGCTACCTGATC
*
97803267 AGTGAAAAGTGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
* *
97803298 AGTGAAAAATGGTAGCTCCGGCTACCTGATC
1 AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
*
97803329 AGTGAATAGTGGTAGCTTCGGCTAC
1 AGTGAAAAGTGGTAGCTTCGGCTAC
97803354 AAGTGACAAG
Statistics
Matches: 133, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
30 2 0.02
31 130 0.98
32 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.27
Consensus pattern (31 bp):
AGTGAAAAGTGGTAGCTTCGGCTACCTGATC
Found at i:97803525 original size:42 final size:42
Alignment explanation
Indices: 97803418--97803530 Score: 145
Period size: 42 Copynumber: 2.7 Consensus size: 42
97803408 TATGTGATTC
* ** *
97803418 GTGTAAGACCATAGCTGGGCTATGACATTGATATATGAATAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCAATATATGAAGAT
* *
97803460 GTGTAAGACCATAGCCGGGCTATGGCATCAATATGTGAAGAT
1 GTGTAAGACCATAGCTGGGCTATGGCATCAATATATGAAGAT
* **
97803502 GTGTAAGACCATAGTTGAACTATGGCATC
1 GTGTAAGACCATAGCTGGGCTATGGCATC
97803531 GAGAAAACGA
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 61 1.00
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.27
Consensus pattern (42 bp):
GTGTAAGACCATAGCTGGGCTATGGCATCAATATATGAAGAT
Found at i:97804830 original size:6 final size:6
Alignment explanation
Indices: 97804819--97804853 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
97804809 AGCCATTGAA
*
97804819 CCCCCT CCCCCT CCCCCT CCCCCT CCCTCT CCCCC
1 CCCCCT CCCCCT CCCCCT CCCCCT CCCCCT CCCCC
97804854 AACTAACAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.00, C:0.83, G:0.00, T:0.17
Consensus pattern (6 bp):
CCCCCT
Found at i:97811994 original size:5 final size:5
Alignment explanation
Indices: 97811984--97812015 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
97811974 TTTACTGTGA
97811984 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
97812016 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:97812009 original size:9 final size:9
Alignment explanation
Indices: 97811985--97812015 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
97811975 TTACTGTGAA
97811985 AAATAAAAT
1 AAATAAAAT
97811994 AAAATAAAAT
1 -AAATAAAAT
97812004 AAATAAAAT
1 AAATAAAAT
97812013 AAA
1 AAA
97812016 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Done.