Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 288 of 295
Found at i:97816447 original size:5 final size:5
Alignment explanation
Indices: 97816437--97816468 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
97816427 CAATTTGTGA
97816437 AAAAT AAAAT AAAAT AAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT AAA
97816469 GAACACACAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 22 0.85
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:97816462 original size:9 final size:9
Alignment explanation
Indices: 97816438--97816468 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
97816428 AATTTGTGAA
97816438 AAATAAAAT
1 AAATAAAAT
97816447 AAAATAAAAT
1 -AAATAAAAT
97816457 AAATAAAAT
1 AAATAAAAT
97816466 AAA
1 AAA
97816469 GAACACACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAATAAAAT
Found at i:97819346 original size:6 final size:6
Alignment explanation
Indices: 97819335--97819373 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
97819325 GGAAAATTTT
* *
97819335 CCTTTC CCTTTC CCTTCC CCTTCC CCTTCC CCTTCC CCT
1 CCTTCC CCTTCC CCTTCC CCTTCC CCTTCC CCTTCC CCT
97819374 ATCCTTGACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (6 bp):
CCTTCC
Found at i:97822649 original size:34 final size:35
Alignment explanation
Indices: 97822593--97822659 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
97822583 CAAACACCAG
* *
97822593 AAAATATTTTCCAGTAAGTCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
97822628 AAAACATTTTTCAG-AAATCATTTTACAGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
97822660 CATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:97822651 original size:14 final size:14
Alignment explanation
Indices: 97822628--97822667 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
97822618 ACAGAAAAGT
*
97822628 AAAACATTTTTCAG
1 AAAACATTTTACAG
*
97822642 AAATCATTTTACAG
1 AAAACATTTTACAG
97822656 AAAACATTTTAC
1 AAAACATTTTAC
97822668 TGCCAATCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.45, C:0.15, G:0.05, T:0.35
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:97822869 original size:30 final size:30
Alignment explanation
Indices: 97822813--97822869 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
97822803 ATAAAATCAT
* * *
97822813 ATATGAATTTTAATTTAATATCAATTTAAC
1 ATATAAATTTAAATTTAATATAAATTTAAC
97822843 ATATAAATTTAAATTTAA-ATTAAATTT
1 ATATAAATTTAAATTTAATA-TAAATTT
97822870 CATGAGTTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 1 0.04
30 22 0.96
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (30 bp):
ATATAAATTTAAATTTAATATAAATTTAAC
Found at i:97823352 original size:24 final size:26
Alignment explanation
Indices: 97823323--97823371 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
97823313 CTTATTTTAA
*
97823323 TATTTG-TTT-TTATATTTTTAAATG
1 TATTTGATTTATTATATTTTAAAATG
97823347 TATTTGATTTATTATATTTTAAAAT
1 TATTTGATTTATTATATTTTAAAAT
97823372 TTTTTATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 6 0.27
25 3 0.14
26 13 0.59
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (26 bp):
TATTTGATTTATTATATTTTAAAATG
Found at i:97823648 original size:14 final size:15
Alignment explanation
Indices: 97823618--97823655 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
97823608 CTCGAAAAAA
97823618 ATTCAAATTTCGAATT
1 ATTCAAA-TTCGAATT
97823634 ATTCAAATT-GAATT
1 ATTCAAATTCGAATT
*
97823648 AATCAAAT
1 ATTCAAAT
97823656 CAATTCGAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 12 0.57
15 2 0.10
16 7 0.33
ACGTcount: A:0.45, C:0.11, G:0.05, T:0.39
Consensus pattern (15 bp):
ATTCAAATTCGAATT
Found at i:97824091 original size:21 final size:21
Alignment explanation
Indices: 97824054--97824108 Score: 69
Period size: 23 Copynumber: 2.6 Consensus size: 21
97824044 ATAATATTTA
97824054 TTAAAAAATAATATTTTTTACAT
1 TTAAAAAAT-ATATTTTTTA-AT
97824077 TTAAAAAATAT-TTTTTTAAT
1 TTAAAAAATATATTTTTTAAT
*
97824097 TT-CAAAATATAT
1 TTAAAAAATATAT
97824109 GGTGACAAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 7 0.23
20 5 0.17
21 7 0.23
22 2 0.07
23 9 0.30
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (21 bp):
TTAAAAAATATATTTTTTAAT
Found at i:97824103 original size:19 final size:21
Alignment explanation
Indices: 97824054--97824108 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 21
97824044 ATAATATTTA
97824054 TTAAAAAATAATATTTTTTACAT
1 TTAAAAAAT-AT-TTTTTTACAT
97824077 TTAAAAAATATTTTTTTA-AT
1 TTAAAAAATATTTTTTTACAT
*
97824097 TTCAAAATATAT
1 TT-AAAAAATAT
97824109 GGTGACAAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 4 0.13
21 15 0.50
22 2 0.07
23 9 0.30
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (21 bp):
TTAAAAAATATTTTTTTACAT
Found at i:97824416 original size:20 final size:19
Alignment explanation
Indices: 97824377--97824456 Score: 81
Period size: 20 Copynumber: 4.0 Consensus size: 19
97824367 TCTCAACAAA
97824377 AATTTTAAAATAATTCAAAAT
1 AATTTT-AAA-AATTCAAAAT
*
97824398 AATTTTCAAAAATTTAAAAT
1 AATTTT-AAAAATTCAAAAT
*
97824418 AATTTTTAAAATTCAAAAT
1 AATTTTAAAAATTCAAAAT
*
97824437 -ATTTATAAAATTTTCAAAAT
1 AATTT-TAAAA-ATTCAAAAT
97824457 TTATATTTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
18 4 0.08
19 15 0.29
20 23 0.45
21 9 0.18
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (19 bp):
AATTTTAAAAATTCAAAAT
Found at i:97824421 original size:10 final size:10
Alignment explanation
Indices: 97824380--97824422 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
97824370 CAACAAAAAT
97824380 TTTAAAATAA
1 TTTAAAATAA
*
97824390 TTCAAAATAA
1 TTTAAAATAA
*
97824400 TTTTCAAA-AA
1 -TTTAAAATAA
97824410 TTTAAAATAA
1 TTTAAAATAA
97824420 TTT
1 TTT
97824423 TTAAAATTCA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
9 6 0.22
10 16 0.59
11 5 0.19
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (10 bp):
TTTAAAATAA
Found at i:97824448 original size:27 final size:27
Alignment explanation
Indices: 97824402--97824457 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
97824392 CAAAATAATT
*
97824402 TTCAAAAATTTAAAATAATTTTTAAAA
1 TTCAAAAATTTAAAATAATTTTCAAAA
*
97824429 TTCAAAATATTTATAA-AATTTTCAAAA
1 TTCAAAA-ATTTAAAATAATTTTCAAAA
97824456 TT
1 TT
97824458 TATATTTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 19 0.73
28 7 0.27
ACGTcount: A:0.52, C:0.05, G:0.00, T:0.43
Consensus pattern (27 bp):
TTCAAAAATTTAAAATAATTTTCAAAA
Found at i:97825900 original size:22 final size:23
Alignment explanation
Indices: 97825875--97825934 Score: 67
Period size: 22 Copynumber: 2.8 Consensus size: 23
97825865 AAATAACTTA
97825875 AATAAAAATATTTAAATAAT-GT
1 AATAAAAATATTTAAATAATCGT
*
97825897 AATAAAAA-A-TTAAA-AATCTT
1 AATAAAAATATTTAAATAATCGT
97825917 AAT-AAAATATATTAAATA
1 AATAAAAATAT-TTAAATA
97825935 TTAAAAACTA
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
19 7 0.22
20 10 0.31
21 1 0.03
22 13 0.41
23 1 0.03
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (23 bp):
AATAAAAATATTTAAATAATCGT
Found at i:97827335 original size:20 final size:17
Alignment explanation
Indices: 97827309--97827355 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 17
97827299 TGGTTGAACC
97827309 AATTTTTAATTTTTTAAT
1 AATTTTTAATTTTTT-AT
*
97827327 ATATATTTTAAATTTTTAT
1 A-AT-TTTTAATTTTTTAT
97827346 AATTTTTAAT
1 AATTTTTAAT
97827356 AATTTATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
17 6 0.24
18 3 0.12
19 5 0.20
20 11 0.44
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
AATTTTTAATTTTTTAT
Found at i:97841304 original size:36 final size:37
Alignment explanation
Indices: 97841252--97841322 Score: 117
Period size: 36 Copynumber: 1.9 Consensus size: 37
97841242 TCATTATGAA
* *
97841252 AAAATATTCTTTTATTCTTTTCTTTTCATTCATAATC
1 AAAATATTCTTTTATTCTTTCCATTTCATTCATAATC
97841289 AAAATATT-TTTTATTCTTTCCATTTCATTCATAA
1 AAAATATTCTTTTATTCTTTCCATTTCATTCATAA
97841323 CCATACATAC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
36 24 0.75
37 8 0.25
ACGTcount: A:0.30, C:0.15, G:0.00, T:0.55
Consensus pattern (37 bp):
AAAATATTCTTTTATTCTTTCCATTTCATTCATAATC
Found at i:97844964 original size:35 final size:35
Alignment explanation
Indices: 97844913--97845072 Score: 232
Period size: 35 Copynumber: 4.6 Consensus size: 35
97844903 CTTATTGAAG
* *
97844913 TACCATACCTACGTTTCACAACTCGGTATGGATGA
1 TACCATACCTACGTTTCACAACTCAGTATGGATAA
* *
97844948 TACCATACCTAAGTTTCACAACTCAGTATGGTTAA
1 TACCATACCTACGTTTCACAACTCAGTATGGATAA
*
97844983 TACCATACCTACGTTTCACAACTCAGTATGGATGA
1 TACCATACCTACGTTTCACAACTCAGTATGGATAA
*
97845018 TACCATACCTACGTTTCACAACTC-GATATGGTTAA
1 TACCATACCTACGTTTCACAACTCAG-TATGGATAA
* *
97845053 TATCATACCTACATTTCACA
1 TACCATACCTACGTTTCACA
97845073 CTTTGCCATG
Statistics
Matches: 113, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
34 1 0.01
35 112 0.99
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.31
Consensus pattern (35 bp):
TACCATACCTACGTTTCACAACTCAGTATGGATAA
Found at i:97845025 original size:70 final size:70
Alignment explanation
Indices: 97844913--97845072 Score: 268
Period size: 70 Copynumber: 2.3 Consensus size: 70
97844903 CTTATTGAAG
*
97844913 TACCATACCTACGTTTCACAACTCGGTATGGATGATACCATACCTAAGTTTCACAACTC-AGTAT
1 TACCATACCTACGTTTCACAACTCAGTATGGATGATACCATACCTAAGTTTCACAACTCGA-TAT
97844977 GGTTAA
65 GGTTAA
*
97844983 TACCATACCTACGTTTCACAACTCAGTATGGATGATACCATACCTACGTTTCACAACTCGATATG
1 TACCATACCTACGTTTCACAACTCAGTATGGATGATACCATACCTAAGTTTCACAACTCGATATG
97845048 GTTAA
66 GTTAA
* *
97845053 TATCATACCTACATTTCACA
1 TACCATACCTACGTTTCACA
97845073 CTTTGCCATG
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
70 84 0.99
71 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.31
Consensus pattern (70 bp):
TACCATACCTACGTTTCACAACTCAGTATGGATGATACCATACCTAAGTTTCACAACTCGATATG
GTTAA
Found at i:97848322 original size:96 final size:97
Alignment explanation
Indices: 97848198--97848424 Score: 253
Period size: 96 Copynumber: 2.4 Consensus size: 97
97848188 AATTAAAGCC
* * *
97848198 ACAAACCTTATCTCCTTGAAGTTGCAGTGGAGTAGGTC-GAAGATAGCAAATCTTAGCTCTC-TG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGGACTGAAGATAGCAAATCTTAGCTC-CATG
** ** *
97848261 AAGTTGCGGTAGAGTAGATCAAAGCTACAAGTT
65 AAGTTGCACTAGAACAGATCAAAGCTACAAATT
* * * * *
97848294 ACAAATCTTATCTCCCTGAAGTTACAGTGAAGCA-GACTGAAGATAGCGAATCTTATCTCCATGA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGGACTGAAGATAGCAAATCTTAGCTCCATGA
* * * *
97848358 AGTTGTACTGGAACGGATTAAAGCTACAAATT
66 AGTTGCACTAGAACAGATCAAAGCTACAAATT
* *
97848390 ACAAATCTTATCTCCCTAAAATTGCAGTGGAGTAG
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAG
97848425 ATTAAAGTGA
Statistics
Matches: 106, Mismatches: 22, Indels: 5
0.80 0.17 0.04
Matches are distributed among these distances:
95 3 0.03
96 103 0.97
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (97 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGGACTGAAGATAGCAAATCTTAGCTCCATGA
AGTTGCACTAGAACAGATCAAAGCTACAAATT
Found at i:97848442 original size:140 final size:140
Alignment explanation
Indices: 97848297--97848603 Score: 334
Period size: 140 Copynumber: 2.2 Consensus size: 140
97848287 ACAAGTTACA
* *
97848297 AATCTTATCTCCCTGAAGTTACAGTGAAGCAGACT-GAAGATAGCGAATCTTATCTC-CATGAAG
1 AATCTTATCTCCCTGAAGTTACAGTGAAGCAG-CTCGAAGATAGCAAATCCTATCTCTC-TGAAG
* * * * * *
97848360 TTGTACTGGAACGGATTAAAGCTACAAATTACAAATCTTATCTCCCTAAAATTGCAGTGGAGTAG
64 TTGCACTAGAACAGATTAAAGCTACAAATTACAAATCTTATCTCCCTAAAATTGCAATAGAGCAG
*
97848425 ATTAAAGTGATA-G
129 ACTAAA--GATACG
** * * *
97848438 -ATCTTATCTCCCTGAAGTTGTAGTGGAGTAGGTCGAAGATAGCAAATCCTATCTCTCTGAAGTT
1 AATCTTATCTCCCTGAAGTTACAGTGAAGCAGCTCGAAGATAGCAAATCCTATCTCTCTGAAGTT
* ** * * * * *
97848502 GCAGTAGAGTAGATTAAAGCTACAAGTTACAAGTCTTATCTCCCTGAAGTTGCAATAGAGCGGAC
66 GCACTAGAACAGATTAAAGCTACAAATTACAAATCTTATCTCCCTAAAATTGCAATAGAGCAGAC
97848567 TAAAGATAGCG
131 TAAAGATA-CG
*
97848578 AATCTTATTTCCCTGAAGTTACAGTG
1 AATCTTATCTCCCTGAAGTTACAGTG
97848604 GAACAGATTA
Statistics
Matches: 136, Mismatches: 25, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
138 4 0.03
139 1 0.01
140 108 0.79
141 23 0.17
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.29
Consensus pattern (140 bp):
AATCTTATCTCCCTGAAGTTACAGTGAAGCAGCTCGAAGATAGCAAATCCTATCTCTCTGAAGTT
GCACTAGAACAGATTAAAGCTACAAATTACAAATCTTATCTCCCTAAAATTGCAATAGAGCAGAC
TAAAGATACG
Found at i:97848463 original size:44 final size:44
Alignment explanation
Indices: 97848393--97848753 Score: 165
Period size: 44 Copynumber: 7.9 Consensus size: 44
97848383 ACAAATTACA
* *
97848393 AATCTTATCTCCCTAAAATTGCAGTGGAGTAGATTAAAGTGATAG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAG-GATAG
* * **
97848438 -ATCTTATCTCCCTGAAGTTGTAGTGGAGTAGGTCGAA-GATAG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGGATAG
* * * * *
97848480 CAAATCCTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTACAAGTTAC
1 --AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAG------GATAG
* * ** *
97848532 AAGTCTTATCTCCCTGAAGTTGCAATAGAGCGGACTAAA-GATAGCG
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGGATA--G
* * ** * * *
97848578 AATCTTATTTCCCTGAAGTTACAGTGGAACAGATTAAAGCTACAAACAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAG-----GATAG
** * * * *
97848627 AATCTTATCTTTCTGAAGTTGCAGAGAAGAAGATTGAA-GATACG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGGATA-G
* * * * * *
97848671 AGTCTCATCTCACTGAAGTTGCAGTGGAGCAGATTAAA-GCTAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGGATAG
* * * *
97848714 AAGTCTAATCTCCCTAAAGTCGCAGTGGAGCAGATTAAAG
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAG
97848754 CTACAAGTCT
Statistics
Matches: 234, Mismatches: 60, Indels: 44
0.69 0.18 0.13
Matches are distributed among these distances:
42 5 0.02
43 3 0.01
44 99 0.42
45 59 0.25
46 2 0.01
49 29 0.12
50 2 0.01
51 32 0.14
52 3 0.01
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.27
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGGATAG
Found at i:97848574 original size:96 final size:96
Alignment explanation
Indices: 97848438--97848717 Score: 259
Period size: 96 Copynumber: 2.9 Consensus size: 96
97848428 AAAGTGATAG
* * * * * * * *
97848438 ATCTTATCTCCCTGAAGTTGTAGTGGAGTAG-GTCGAAGATAGCAAATCCTATCTCTCTGAAGTT
1 ATCTTATCTCCCTGAAGTTGCAGAGAAGAAGACT-AAAGATAGCGAATCCTATCTCACTGAAGTT
* *
97848502 GCAGTAGAGTAGATTAAAGCTACAAGTTAC-AA
65 GCAGTGGAGCAGATTAAAGCTACAAG-TACAAA
* * ** * * *
97848534 GTCTTATCTCCCTGAAGTTGCA-ATAGAGCGGACTAAAGATAGCGAATCTTATTTCCCTGAAGTT
1 ATCTTATCTCCCTGAAGTTGCAGAGA-AGAAGACTAAAGATAGCGAATCCTATCTCACTGAAGTT
* *
97848598 ACAGTGGAACAGATTAAAGCTACAA--ACAAA
65 GCAGTGGAGCAGATTAAAGCTACAAGTACAAA
** * * *
97848628 ATCTTATCTTTCTGAAGTTGCAGAGAAGAAGATTGAAGATA-CGAGT-CTCATCTCACTGAAGTT
1 ATCTTATCTCCCTGAAGTTGCAGAGAAGAAGACTAAAGATAGCGAATCCT-ATCTCACTGAAGTT
97848691 GCAGTGGAGCAGATTAAAGCTACAAGT
65 GCAGTGGAGCAGATTAAAGCTACAAGT
97848718 CTAATCTCCC
Statistics
Matches: 146, Mismatches: 31, Indels: 15
0.76 0.16 0.08
Matches are distributed among these distances:
92 1 0.01
93 41 0.28
94 32 0.22
95 2 0.01
96 69 0.47
97 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (96 bp):
ATCTTATCTCCCTGAAGTTGCAGAGAAGAAGACTAAAGATAGCGAATCCTATCTCACTGAAGTTG
CAGTGGAGCAGATTAAAGCTACAAGTACAAA
Found at i:97848575 original size:236 final size:234
Alignment explanation
Indices: 97848204--97848699 Score: 674
Period size: 236 Copynumber: 2.1 Consensus size: 234
97848194 AGCCACAAAC
* * *
97848204 CTTATCTCCTTGAAGTTGCAGTGGAGTAGGTCGAAGATAGCAAATCTTAGCTCTCTGAAGTTGCG
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGGTCGAAGATAGCAAATCCTAGCTCTCTGAAGTTGCA
* *
97848269 GTAGAGTAGATCAAAGCTACAAGTTACAAATCTTATCTCCCTGAAGTTACAGTGAAGCAGACTGA
66 GTAGAGTAGATCAAAGCTACAAGTTACAAATCTTATCTCCCTGAAGTTACAATGAAGCAGACTAA
** * *
97848334 AGATAGCGAATCTTATCTCCATGAAGTTGTACTGGAACGGATTAAAGCTACAAATTACAAATCTT
131 AGATAGCGAATCTTATCTCCATGAAGTTACACTGGAACAGATTAAAGCTACAAA-CA-AAATCTT
97848399 ATCTCCCTAAAATTGCAGTGGAGTAGATTAAAGTGATAGAT
194 ATCTCCCTAAAATTGCAGTGGAGTAGATTAAAGTGATAGAT
* *
97848440 CTTATCTCCCTGAAGTTGTAGTGGAGTAGGTCGAAGATAGCAAATCCTATCTCTCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGTAGGTCGAAGATAGCAAATCCTAGCTCTCTGAAGTTGCA
* * * *
97848505 GTAGAGTAGATTAAAGCTACAAGTTACAAGTCTTATCTCCCTGAAGTTGCAAT-AGAGCGGACTA
66 GTAGAGTAGATCAAAGCTACAAGTTACAAATCTTATCTCCCTGAAGTTACAATGA-AGCAGACTA
* * *
97848569 AAGATAGCGAATCTTATTTCCCTGAAGTTACAGTGGAACAGATTAAAGCTACAAACAAAATCTTA
130 AAGATAGCGAATCTTATCTCCATGAAGTTACACTGGAACAGATTAAAGCTACAAACAAAATCTTA
** * * * * * *
97848634 TCTTTCTGAAGTTGCAGAGAAGAAGATTGAA--GATACGAGT
195 TCTCCCTAAAATTGCAGTGGAGTAGATTAAAGTGATA-GA-T
* *
97848674 CTCATCTCACTGAAGTTGCAGTGGAG
1 CTTATCTCCCTGAAGTTGCAGTGGAG
97848700 CAGATTAAAG
Statistics
Matches: 228, Mismatches: 29, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
232 4 0.02
233 2 0.01
234 55 0.24
235 2 0.01
236 165 0.72
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (234 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGTAGGTCGAAGATAGCAAATCCTAGCTCTCTGAAGTTGCA
GTAGAGTAGATCAAAGCTACAAGTTACAAATCTTATCTCCCTGAAGTTACAATGAAGCAGACTAA
AGATAGCGAATCTTATCTCCATGAAGTTACACTGGAACAGATTAAAGCTACAAACAAAATCTTAT
CTCCCTAAAATTGCAGTGGAGTAGATTAAAGTGATAGAT
Found at i:97848709 original size:93 final size:94
Alignment explanation
Indices: 97848473--97848715 Score: 251
Period size: 93 Copynumber: 2.6 Consensus size: 94
97848463 GAGTAGGTCG
* * * * *
97848473 AAGATAGCAAATC-CTATCTCTCTGAAGTTGCAGTAGAGTAGATTAAAGCTACAAGTTACAAGTC
1 AAGATAGCGAATCTC-ATCTCACTGAAGTTGCAGTGGAGCAGATTAAAGCTACAA--TACAAATC
* **
97848537 TTATCTCCCTGAAGTTGCAATAGAGCGGACTA
63 TTATCTCCCTGAAGTTGCAAGAGAGAAGACTA
* * * * *
97848569 AAGATAGCGAATCTTATTTCCCTGAAGTTACAGTGGAACAGATTAAAGCTACAA-ACAAAATCTT
1 AAGATAGCGAATCTCATCTCACTGAAGTTGCAGTGGAGCAGATTAAAGCTACAATAC-AAATCTT
** * *
97848633 ATCTTTCTGAAGTTGC-AGAGAAGAAGATTG
65 ATCTCCCTGAAGTTGCAAGAG-AGAAGACTA
*
97848663 AAGATA-CGAGTCTCATCTCACTGAAGTTGCAGTGGAGCAGATTAAAGCTACAA
1 AAGATAGCGAATCTCATCTCACTGAAGTTGCAGTGGAGCAGATTAAAGCTACAA
97848716 GTCTAATCTC
Statistics
Matches: 122, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
93 46 0.38
94 31 0.25
96 45 0.37
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.26
Consensus pattern (94 bp):
AAGATAGCGAATCTCATCTCACTGAAGTTGCAGTGGAGCAGATTAAAGCTACAATACAAATCTTA
TCTCCCTGAAGTTGCAAGAGAGAAGACTA
Found at i:97848754 original size:44 final size:44
Alignment explanation
Indices: 97848639--97848778 Score: 163
Period size: 44 Copynumber: 3.2 Consensus size: 44
97848629 TCTTATCTTT
* * * * * * * *
97848639 CTGAAGTTGCAGAGAAGAAGATTGAAGATACGAGTCTCATCTCA
1 CTGAAGTCGCAGTGGAGCAGATTAAAGCTACAAGTCTAATCTCA
* *
97848683 CTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAGTCTAATCTCC
1 CTGAAGTCGCAGTGGAGCAGATTAAAGCTACAAGTCTAATCTCA
* * *
97848727 CTAAAGTCGCAGTGGAGCAGATTAAAGCTACAAGTCTAGTCTCT
1 CTGAAGTCGCAGTGGAGCAGATTAAAGCTACAAGTCTAATCTCA
97848771 CTGAAGTC
1 CTGAAGTC
97848779 ATAGTGGATT
Statistics
Matches: 83, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 83 1.00
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (44 bp):
CTGAAGTCGCAGTGGAGCAGATTAAAGCTACAAGTCTAATCTCA
Found at i:97850757 original size:29 final size:30
Alignment explanation
Indices: 97850698--97850757 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
97850688 AATTATAAAC
**
97850698 ATATTGGGCCATTTACATAAAAATTAAAAA
1 ATATTGGGCCATTTACATAAAAAACAAAAA
*
97850728 ATATTGGGCCATTTA-TTAAAAAACAAAAA
1 ATATTGGGCCATTTACATAAAAAACAAAAA
97850757 A
1 A
97850758 GAAGGACAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 12 0.44
30 15 0.56
ACGTcount: A:0.52, C:0.10, G:0.10, T:0.28
Consensus pattern (30 bp):
ATATTGGGCCATTTACATAAAAAACAAAAA
Found at i:97856884 original size:10 final size:10
Alignment explanation
Indices: 97856869--97856928 Score: 88
Period size: 10 Copynumber: 6.0 Consensus size: 10
97856859 TAATTTTAGG
97856869 ATTTAT-TTT
1 ATTTATCTTT
97856878 CATTTATCTTT
1 -ATTTATCTTT
97856889 ATTTATCTTT
1 ATTTATCTTT
97856899 ATTTATCTTT
1 ATTTATCTTT
97856909 ATTTAT-TTGT
1 ATTTATCTT-T
97856919 ATTTATCTTT
1 ATTTATCTTT
97856929 TAGAATTTCA
Statistics
Matches: 47, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
9 2 0.04
10 40 0.85
11 5 0.11
ACGTcount: A:0.20, C:0.08, G:0.02, T:0.70
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:97856913 original size:14 final size:15
Alignment explanation
Indices: 97856870--97856928 Score: 52
Period size: 16 Copynumber: 3.9 Consensus size: 15
97856860 AATTTTAGGA
97856870 TTTATTT-TCATTTAT
1 TTTATTTATC-TTTAT
97856885 CTTTATTTATCTTTA-
1 -TTTATTTATCTTTAT
*
97856900 TTTATCTT-TATTTAT
1 TTTAT-TTATCTTTAT
97856915 TTGTATTTATCTTT
1 TT-TATTTATCTTT
97856929 TAGAATTTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 10 0.28
15 6 0.17
16 18 0.50
17 2 0.06
ACGTcount: A:0.19, C:0.08, G:0.02, T:0.71
Consensus pattern (15 bp):
TTTATTTATCTTTAT
Found at i:97857667 original size:17 final size:18
Alignment explanation
Indices: 97857634--97857667 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
97857624 TTTTCCTCAT
*
97857634 TTTAATTTCTTCAATTTA
1 TTTAATTTCTGCAATTTA
97857652 TTTAATTTC-GCAATTT
1 TTTAATTTCTGCAATTT
97857668 CAATTCACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.26, C:0.12, G:0.03, T:0.59
Consensus pattern (18 bp):
TTTAATTTCTGCAATTTA
Found at i:97863314 original size:5 final size:5
Alignment explanation
Indices: 97863300--97863371 Score: 54
Period size: 5 Copynumber: 13.4 Consensus size: 5
97863290 GCAACCCAAT
* * *
97863300 TTTTA TTTTTA TTTTCC TTTTC TTTTA TTTTA GTTTA TTTTA TTTTTA
1 TTTTA -TTTTA TTTT-A TTTTA TTTTA TTTTA TTTTA TTTTA -TTTTA
* *
97863348 TTTATT TTTTC TTATTA TTTTA TT
1 TTT-TA TTTTA TT-TTA TTTTA TT
97863372 ATTTATTATT
Statistics
Matches: 55, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
5 33 0.60
6 22 0.40
ACGTcount: A:0.15, C:0.06, G:0.01, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:97863349 original size:11 final size:11
Alignment explanation
Indices: 97863300--97863378 Score: 56
Period size: 11 Copynumber: 7.2 Consensus size: 11
97863290 GCAACCCAAT
97863300 TTTTATTTTTA
1 TTTTATTTTTA
** *
97863311 TTTTCCTTTTC
1 TTTTATTTTTA
97863322 TTTTA-TTTTA
1 TTTTATTTTTA
*
97863332 GTTTA-TTTTA
1 TTTTATTTTTA
97863342 TTTTTATTTATT-
1 -TTTTATTT-TTA
* *
97863354 TTTTCTTATTA
1 TTTTATTTTTA
97863365 TTTTATTATTTA
1 TTTTATT-TTTA
97863377 TT
1 TT
97863379 ATTTTCAGAT
Statistics
Matches: 52, Mismatches: 11, Indels: 9
0.72 0.15 0.12
Matches are distributed among these distances:
10 15 0.29
11 28 0.54
12 7 0.13
13 2 0.04
ACGTcount: A:0.16, C:0.05, G:0.01, T:0.77
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:97863379 original size:15 final size:14
Alignment explanation
Indices: 97863334--97863383 Score: 66
Period size: 15 Copynumber: 3.5 Consensus size: 14
97863324 TTATTTTAGT
97863334 TTATTTTATTTTTA
1 TTATTTTATTTTTA
*
97863348 TTTATTTT-TTCTTA
1 -TTATTTTATTTTTA
97863362 TTATTTTATTATTTA
1 TTATTTTATT-TTTA
97863377 TTATTTT
1 TTATTTT
97863384 CAGATATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
13 7 0.23
14 7 0.23
15 17 0.55
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (14 bp):
TTATTTTATTTTTA
Found at i:97863391 original size:28 final size:28
Alignment explanation
Indices: 97863334--97863392 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
97863324 TTATTTTAGT
** *
97863334 TTATTTTATTTTTATTTATTTTTTCTTA
1 TTATTTTATTTTTATTTATTTTCACATA
*
97863362 TTATTTTATTATTTA-TTATTTTCAGATA
1 TTATTTTATT-TTTATTTATTTTCACATA
97863390 TTA
1 TTA
97863393 ATAAAACTCT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
28 22 0.85
29 4 0.15
ACGTcount: A:0.24, C:0.03, G:0.02, T:0.71
Consensus pattern (28 bp):
TTATTTTATTTTTATTTATTTTCACATA
Found at i:97864882 original size:10 final size:10
Alignment explanation
Indices: 97864867--97864916 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
97864857 TAATTTTAGG
97864867 ATTTAT-TTT
1 ATTTATCTTT
97864876 CATTTATCTTT
1 -ATTTATCTTT
97864887 ATTTATCTTT
1 ATTTATCTTT
*
97864897 AATTAT-TTGT
1 ATTTATCTT-T
97864907 ATTTATCTTT
1 ATTTATCTTT
97864917 TAGAATTTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:97864924 original size:20 final size:19
Alignment explanation
Indices: 97864884--97864928 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
97864874 TTCATTTATC
**
97864884 TTTATTTATCTTTAATTAT
1 TTTATTTATCTTTAAGAAT
*
97864903 TTGTATTTATCTTTTAGAAT
1 TT-TATTTATCTTTAAGAAT
97864923 TTTATT
1 TTTATT
97864929 AGGAATTGAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.24, C:0.04, G:0.04, T:0.67
Consensus pattern (19 bp):
TTTATTTATCTTTAAGAAT
Found at i:97865665 original size:17 final size:18
Alignment explanation
Indices: 97865633--97865666 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
97865623 TTTTCCTCAT
97865633 TTTAATTTCTGCAATTTA
1 TTTAATTTCTGCAATTTA
97865651 TTTAATTTC-GCAATTT
1 TTTAATTTCTGCAATTT
97865667 CAATTCACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.26, C:0.12, G:0.06, T:0.56
Consensus pattern (18 bp):
TTTAATTTCTGCAATTTA
Found at i:97866427 original size:44 final size:44
Alignment explanation
Indices: 97866379--97866650 Score: 240
Period size: 44 Copynumber: 6.0 Consensus size: 44
97866369 CAAGGATATT
* * *
97866379 AGACTTGTAGCCTT-AATGTGCTCCACTGCAACTTCAGGGAGATG
1 AGACTTGTA-ACTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
* * * ** *
97866423 AGACTCGTATCTTCAATTTGCTCCACAACAACTTCAGAGAGATA
1 AGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
* * *
97866467 AGATTTGTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATA
1 AGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
* * * * *
97866511 AGATTTGTAACTTATAGTTTTAATTTGTTCCACTGCAACTTCAGGGAAATA
1 AGACTTGTAAC-------TTCAATCTGCTCCACTGCAACTTCAGGGAGATA
* * * *
97866562 AGATTTGTAGCTTTAATCTGCTCCATTGCAACTTCAGGGAGATA
1 AGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
* * * *
97866606 AGACTTATAACTTCAACCTGCTCCACTGCTACTTTAGGGAGATA
1 AGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
97866650 A
1 A
97866651 TTGGACTTTG
Statistics
Matches: 187, Mismatches: 33, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
43 3 0.02
44 147 0.79
51 37 0.20
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (44 bp):
AGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAGGGAGATA
Found at i:97866563 original size:95 final size:95
Alignment explanation
Indices: 97866437--97866618 Score: 256
Period size: 95 Copynumber: 1.9 Consensus size: 95
97866427 TCGTATCTTC
* *
97866437 AATTTGCTCCACAACAACTTCAGAGAGATAAGATTTGTAACTTCAATCTGCTCTACTGCAACTTC
1 AATTTGCTCCACAACAACTTCAGAGAAATAAGATTTGTAACTTCAATCTGCTCCACTGCAACTTC
* *
97866502 AGAGAGATAAGATTTGTAACTTATAGTTTT
66 AGAGAGATAAGACTTATAACTTATAGTTTT
* ** * * * *
97866532 AATTTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTAGCTTTAATCTGCTCCATTGCAACTTC
1 AATTTGCTCCACAACAACTTCAGAGAAATAAGATTTGTAACTTCAATCTGCTCCACTGCAACTTC
*
97866597 AGGGAGATAAGACTTATAACTT
66 AGAGAGATAAGACTTATAACTT
97866619 CAACCTGCTC
Statistics
Matches: 75, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
95 75 1.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (95 bp):
AATTTGCTCCACAACAACTTCAGAGAAATAAGATTTGTAACTTCAATCTGCTCCACTGCAACTTC
AGAGAGATAAGACTTATAACTTATAGTTTT
Found at i:97866648 original size:139 final size:139
Alignment explanation
Indices: 97866391--97866650 Score: 340
Period size: 139 Copynumber: 1.9 Consensus size: 139
97866381 ACTTGTAGCC
* * * *
97866391 TTAATGTGCTCCACTGCAACTTCAGGGAGATGAGACTCGTATCTTCAATTTGCTCCACAACAACT
1 TTAATGTGCTCCACTGCAACTTCAGGGAAATAAGACTCGTAGCTTCAATCTGCTCCACAACAACT
* * * *
97866456 TCAGAGAGATAAGATTTGTAACTTCAATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTGTAA
66 TCAGAGAGATAAGACTTATAACTTCAACCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAA
97866521 CTTATAGTT
131 CTTATAGTT
* * * * * ***
97866530 TTAATTTGTTCCACTGCAACTTCAGGGAAATAAGATTTGTAGCTTTAATCTGCTCCATTGCAACT
1 TTAATGTGCTCCACTGCAACTTCAGGGAAATAAGACTCGTAGCTTCAATCTGCTCCACAACAACT
* * * *
97866595 TCAGGGAGATAAGACTTATAACTTCAACCTGCTCCACTGCTACTTTAGGGAGATAA
66 TCAGAGAGATAAGACTTATAACTTCAACCTGCTCCACTGCAACTTCAGAGAGATAA
97866651 TTGGACTTTG
Statistics
Matches: 101, Mismatches: 20, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
139 101 1.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.32
Consensus pattern (139 bp):
TTAATGTGCTCCACTGCAACTTCAGGGAAATAAGACTCGTAGCTTCAATCTGCTCCACAACAACT
TCAGAGAGATAAGACTTATAACTTCAACCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAA
CTTATAGTT
Found at i:97867290 original size:67 final size:67
Alignment explanation
Indices: 97867207--97867340 Score: 223
Period size: 67 Copynumber: 2.0 Consensus size: 67
97867197 GTACCAAAAT
* *
97867207 GTTACATTCGTTACCGAAATAATTATAATAATTCCATACTAATTACACATTCTTACTCAAGCTAT
1 GTTACATTCGTCACCGAAATAATTATAATAATTCCAGACTAATTACACATTCTTACTCAAGCTAT
97867272 TA
66 TA
* * *
97867274 GTTACATTCGTCACCGAAATAATTATAATAATTCTAGACTAATTACACATTTTTACTTAAGCTAT
1 GTTACATTCGTCACCGAAATAATTATAATAATTCCAGACTAATTACACATTCTTACTCAAGCTAT
97867339 TA
66 TA
97867341 AGCTCATAAT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
67 62 1.00
ACGTcount: A:0.37, C:0.18, G:0.07, T:0.38
Consensus pattern (67 bp):
GTTACATTCGTCACCGAAATAATTATAATAATTCCAGACTAATTACACATTCTTACTCAAGCTAT
TA
Found at i:97875035 original size:39 final size:39
Alignment explanation
Indices: 97874991--97875070 Score: 142
Period size: 39 Copynumber: 2.1 Consensus size: 39
97874981 GTGCTTAATT
97874991 CAATATCTGATAATAACTATAAACAATCCCGGCTAAATA
1 CAATATCTGATAATAACTATAAACAATCCCGGCTAAATA
* *
97875030 CAATATGTGATAATAACTATAAACACTCCCGGCTAAATA
1 CAATATCTGATAATAACTATAAACAATCCCGGCTAAATA
97875069 CA
1 CA
97875071 TGGCTGACAG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.45, C:0.21, G:0.09, T:0.25
Consensus pattern (39 bp):
CAATATCTGATAATAACTATAAACAATCCCGGCTAAATA
Found at i:97876113 original size:12 final size:12
Alignment explanation
Indices: 97876096--97876120 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
97876086 TATTTGTTTC
97876096 TTGTTTTAATAT
1 TTGTTTTAATAT
97876108 TTGTTTTAATAT
1 TTGTTTTAATAT
97876120 T
1 T
97876121 CTTAAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (12 bp):
TTGTTTTAATAT
Found at i:97877247 original size:31 final size:31
Alignment explanation
Indices: 97877169--97877266 Score: 92
Period size: 31 Copynumber: 3.2 Consensus size: 31
97877159 TTCTTTAAAT
* * *
97877169 GTATATGATTAAATCAAAATTAAAGTTTCAA
1 GTATATAATTAAACCAAAATTAAAATTTCAA
* * *
97877200 GTATATATTTAAACCAAAATTAAAATTTTAT
1 GTATATAATTAAACCAAAATTAAAATTTCAA
* * * *
97877231 GTGTATAATTACACC-AAATTACAA-TTCAT
1 GTATATAATTAAACCAAAATTAAAATTTCAA
97877260 GTATATA
1 GTATATA
97877267 GTTATATATT
Statistics
Matches: 55, Mismatches: 12, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
29 10 0.18
30 8 0.15
31 37 0.67
ACGTcount: A:0.46, C:0.09, G:0.07, T:0.38
Consensus pattern (31 bp):
GTATATAATTAAACCAAAATTAAAATTTCAA
Found at i:97884943 original size:46 final size:46
Alignment explanation
Indices: 97884891--97885122 Score: 331
Period size: 46 Copynumber: 5.0 Consensus size: 46
97884881 GTGTGCTCTC
97884891 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * *
97884937 TGATATGAAATGTGAAAGACCATGGTTGGAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
97884983 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
***
97885029 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
* ** * * * *
97885075 TGACA-GAAAATAAGTAAGACCATAGTTGAAAGACACTATGGCATCA
1 TGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
97885121 TG
1 TG
97885123 TCAAAGATAA
Statistics
Matches: 168, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 167 0.99
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.22
Consensus pattern (46 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:97891048 original size:21 final size:22
Alignment explanation
Indices: 97891013--97891053 Score: 59
Period size: 21 Copynumber: 1.9 Consensus size: 22
97891003 TACAGGTCAA
97891013 TGTAAAATAAGTTAT-TTTTCT
1 TGTAAAATAAGTTATCTTTTCT
97891034 TGTAAAATGAA-TTATCTTTT
1 TGTAAAAT-AAGTTATCTTTT
97891054 TGAAAAACGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.34, C:0.05, G:0.10, T:0.51
Consensus pattern (22 bp):
TGTAAAATAAGTTATCTTTTCT
Found at i:97891808 original size:14 final size:13
Alignment explanation
Indices: 97891780--97891818 Score: 69
Period size: 14 Copynumber: 2.9 Consensus size: 13
97891770 CTAAAAAAAT
97891780 AAATTATTTTTAA
1 AAATTATTTTTAA
97891793 AAATTATTTTTCAA
1 AAATTATTTTT-AA
97891807 AAATTATTTTTA
1 AAATTATTTTTA
97891819 GTAAAACAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 12 0.48
14 13 0.52
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (13 bp):
AAATTATTTTTAA
Found at i:97897708 original size:11 final size:11
Alignment explanation
Indices: 97897692--97897721 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
97897682 TTATTAGTAG
97897692 TAGAGTTTTGC
1 TAGAGTTTTGC
97897703 TAGAGTTTTGC
1 TAGAGTTTTGC
97897714 TAGAGTTT
1 TAGAGTTT
97897722 GGATTCTTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.20, C:0.07, G:0.27, T:0.47
Consensus pattern (11 bp):
TAGAGTTTTGC
Found at i:97903946 original size:36 final size:34
Alignment explanation
Indices: 97903830--97903946 Score: 117
Period size: 35 Copynumber: 3.3 Consensus size: 34
97903820 ACTCTTTGTT
* * *
97903830 TTGGTGTGTTTCTGTTGGACTAGCTTTTATGAGCA
1 TTGGTGTGTTTC-GATGGATTAGCTCTTATGAGCA
* * * *
97903865 TTGATGTGTTTCGAAGGGATTAACTCTTATGACCA
1 TTGGTGTGTTTCG-ATGGATTAGCTCTTATGAGCA
* *
97903900 TTGGTGTGTTTCAGATGGATTGGCTCTTCTGAGCA
1 TTGGTGTGTTTC-GATGGATTAGCTCTTATGAGCA
97903935 TTTGGTGTGTTT
1 -TTGGTGTGTTT
97903947 TGGTTCGATT
Statistics
Matches: 66, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
34 1 0.02
35 53 0.80
36 12 0.18
ACGTcount: A:0.16, C:0.12, G:0.28, T:0.44
Consensus pattern (34 bp):
TTGGTGTGTTTCGATGGATTAGCTCTTATGAGCA
Found at i:97906499 original size:43 final size:43
Alignment explanation
Indices: 97906406--97906490 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
97906396 GTGTCACACG
* * * *
97906406 ACCGTATGTGTAGGCCGTGTGGCTGATTGTGTGTTGTCACCCA
1 ACCGTGTGTGTAGGCCATGTGACTGATTGTGTGTTGCCACCCA
*
97906449 ACCGTGTGTGTAGGCCATGTGATTGATTGTGTGTTGCCACCC
1 ACCGTGTGTGTAGGCCATGTGACTGATTGTGTGTTGCCACCC
97906491 GGTTGTGTGC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.14, C:0.21, G:0.32, T:0.33
Consensus pattern (43 bp):
ACCGTGTGTGTAGGCCATGTGACTGATTGTGTGTTGCCACCCA
Found at i:97909871 original size:20 final size:20
Alignment explanation
Indices: 97909820--97909872 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
97909810 AATCTGATAA
*
97909820 GATATGCTATATTATGGTTC
1 GATATGCTATGTTATGGTTC
*
97909840 GATATGCCATGTTAT-GTATC
1 GATATGCTATGTTATGGT-TC
*
97909860 GATATGATATGTT
1 GATATGCTATGTT
97909873 TCGTAAAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.07
20 26 0.93
ACGTcount: A:0.26, C:0.09, G:0.21, T:0.43
Consensus pattern (20 bp):
GATATGCTATGTTATGGTTC
Found at i:97911217 original size:25 final size:24
Alignment explanation
Indices: 97911166--97911213 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
97911156 TTAATGTTTG
97911166 TTTATACTAATATTTTTCTTTGTAA
1 TTTATACTAATA-TTTTCTTTGTAA
*
97911191 TTTATACTGATA-TTTCTTTGTAA
1 TTTATACTAATATTTTCTTTGTAA
97911214 AATTAAACTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 11 0.50
25 11 0.50
ACGTcount: A:0.27, C:0.08, G:0.06, T:0.58
Consensus pattern (24 bp):
TTTATACTAATATTTTCTTTGTAA
Found at i:97914841 original size:6 final size:6
Alignment explanation
Indices: 97914830--97914868 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
97914820 TATGTACCGC
* * *
97914830 TACTGT TACTGT TACTGT TACTGC TACTCT TACCGT TAC
1 TACTGT TACTGT TACTGT TACTGT TACTGT TACTGT TAC
97914869 GGTGTATTTC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.18, C:0.26, G:0.13, T:0.44
Consensus pattern (6 bp):
TACTGT
Found at i:97914857 original size:18 final size:18
Alignment explanation
Indices: 97914824--97914868 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
97914814 GTACTCTATG
* * *
97914824 TACCGCTACTGTTACTGT
1 TACCGTTACTGCTACTCT
*
97914842 TACTGTTACTGCTACTCT
1 TACCGTTACTGCTACTCT
97914860 TACCGTTAC
1 TACCGTTAC
97914869 GGTGTATTTC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.18, C:0.29, G:0.13, T:0.40
Consensus pattern (18 bp):
TACCGTTACTGCTACTCT
Found at i:97915018 original size:18 final size:18
Alignment explanation
Indices: 97914997--97915031 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
97914987 TGAATGATAC
*
97914997 TGACAGTTACTGAATAAT
1 TGACAGATACTGAATAAT
*
97915015 TGACTGATACTGAATAA
1 TGACAGATACTGAATAA
97915032 CTGATTGTCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.31
Consensus pattern (18 bp):
TGACAGATACTGAATAAT
Found at i:97916872 original size:20 final size:20
Alignment explanation
Indices: 97916849--97916906 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
97916839 AATCTGATAA
*
97916849 GATATGTTATGTTATG-ATTC
1 GATATGATATGTTATGTA-TC
**
97916869 GATATGCCATGTTATGTATC
1 GATATGATATGTTATGTATC
*
97916889 GATATGATATGTTTTGTA
1 GATATGATATGTTATGTA
97916907 AAATATGGTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.26, C:0.07, G:0.21, T:0.47
Consensus pattern (20 bp):
GATATGATATGTTATGTATC
Found at i:97924189 original size:14 final size:15
Alignment explanation
Indices: 97924157--97924202 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
97924147 ATTGTTTACT
*
97924157 TATTATTTA-AGTAAA
1 TATTATTTATA-TTAA
97924172 TATTA-TTATATTAA
1 TATTATTTATATTAA
97924186 TATTATTTTATATTAA
1 TATTA-TTTATATTAA
97924202 T
1 T
97924203 TAAATAAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 11 0.41
15 6 0.22
16 10 0.37
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (15 bp):
TATTATTTATATTAA
Found at i:97924210 original size:4 final size:4
Alignment explanation
Indices: 97924203--97924236 Score: 59
Period size: 4 Copynumber: 8.2 Consensus size: 4
97924193 TTATATTAAT
97924203 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TTAAA T
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA -TAAA T
97924237 TGTGACAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 25 0.86
5 4 0.14
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (4 bp):
TAAA
Found at i:97925730 original size:13 final size:14
Alignment explanation
Indices: 97925704--97925733 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
97925694 TTTAATAATA
97925704 AAACAAATAAAAAG
1 AAACAAATAAAAAG
97925718 AAACAAA-AAAAAG
1 AAACAAATAAAAAG
97925731 AAA
1 AAA
97925734 GAACAGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.83, C:0.07, G:0.07, T:0.03
Consensus pattern (14 bp):
AAACAAATAAAAAG
Found at i:97926972 original size:44 final size:44
Alignment explanation
Indices: 97926887--97926978 Score: 103
Period size: 44 Copynumber: 2.1 Consensus size: 44
97926877 GTGTTAGGGA
* * ** * * *
97926887 TACTTCGACCTTGAGTCGATGAGGCATTATAAGTTTTGTACTGT
1 TACTTCGACATCGAGTCGATGAGGCACCATAAGTGTCGTACTGC
**
97926931 TACTTCGACATCGAGTCGATGAGGCACCATGTGTGTCGTACTGC
1 TACTTCGACATCGAGTCGATGAGGCACCATAAGTGTCGTACTGC
97926975 TACT
1 TACT
97926979 ATTACATCGT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.34
Consensus pattern (44 bp):
TACTTCGACATCGAGTCGATGAGGCACCATAAGTGTCGTACTGC
Found at i:97937917 original size:17 final size:19
Alignment explanation
Indices: 97937888--97937923 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
97937878 ATAACCGAAT
97937888 TGGGCTGTGTGGG-CCACA
1 TGGGCTGTGTGGGTCCACA
97937906 TGGGCT-TGTGGGTCCACA
1 TGGGCTGTGTGGGTCCACA
97937924 CGAGTAGTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.11, C:0.22, G:0.42, T:0.25
Consensus pattern (19 bp):
TGGGCTGTGTGGGTCCACA
Found at i:97938019 original size:17 final size:18
Alignment explanation
Indices: 97937997--97938037 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
97937987 CAATCAGGGT
97937997 GTGTGGGCC-ACACGGGC
1 GTGTGGGCCGACACGGGC
*
97938014 GTGTGGGCCGACATGGGC
1 GTGTGGGCCGACACGGGC
97938032 GTGTGG
1 GTGTGG
97938038 TCCCATTTAG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.10, C:0.22, G:0.51, T:0.17
Consensus pattern (18 bp):
GTGTGGGCCGACACGGGC
Found at i:97939008 original size:27 final size:27
Alignment explanation
Indices: 97938978--97939079 Score: 102
Period size: 27 Copynumber: 3.8 Consensus size: 27
97938968 AGAATACCTT
* *
97938978 AGTTTACAAAATTACTGAAATATCCCC
1 AGTTTATAAAATTACCGAAATATCCCC
*
97939005 AG-TTATAAAATTACC-AAAGTACCCCC
1 AGTTTATAAAATTACCGAAA-TATCCCC
* **
97939031 AGTTTATAAAATTACCCAAATATCATC
1 AGTTTATAAAATTACCGAAATATCCCC
*
97939058 -GATTTGTAAAATTACCGAAATA
1 AG-TTTATAAAATTACCGAAATA
97939080 CCCTTTGTTT
Statistics
Matches: 63, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
25 3 0.05
26 20 0.32
27 37 0.59
28 3 0.05
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.29
Consensus pattern (27 bp):
AGTTTATAAAATTACCGAAATATCCCC
Found at i:97939014 original size:26 final size:26
Alignment explanation
Indices: 97938978--97939054 Score: 93
Period size: 26 Copynumber: 2.9 Consensus size: 26
97938968 AGAATACCTT
* *
97938978 AGTTTACAAAATTACTGAAATATCCCC
1 AGTTTATAAAATTAC-CAAATATCCCC
*
97939005 AG-TTATAAAATTACCAAAGTACCCCC
1 AGTTTATAAAATTACCAAA-TATCCCC
97939031 AGTTTATAAAATTACCCAAATATC
1 AGTTTATAAAATTA-CCAAATATC
97939055 ATCGATTTGT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
25 3 0.07
26 19 0.44
27 16 0.37
28 5 0.12
ACGTcount: A:0.43, C:0.22, G:0.06, T:0.29
Consensus pattern (26 bp):
AGTTTATAAAATTACCAAATATCCCC
Found at i:97939122 original size:27 final size:27
Alignment explanation
Indices: 97939010--97939140 Score: 99
Period size: 27 Copynumber: 4.9 Consensus size: 27
97939000 TCCCCAGTTA
* *
97939010 TAAAATTA-CCAAAGTACCC-CCAGTTTA
1 TAAAATTACCCAAA-TACCCTCGA-TTTG
* *
97939037 TAAAATTACCCAAATATCATCGATTTG
1 TAAAATTACCCAAATACCCTCGATTTG
* *
97939064 TAAAATTACCGAAATACCCTTTG-TTTG
1 TAAAATTACCCAAATACCC-TCGATTTG
* ** *
97939091 CAAAATTACTGAAATACCCTCGACTTG
1 TAAAATTACCCAAATACCCTCGATTTG
*
97939118 TAAAATTA-TCAAAGTACCCTCGA
1 TAAAATTACCCAAA-TACCCTCGA
97939141 ATTAAAAAAA
Statistics
Matches: 85, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
26 6 0.07
27 70 0.82
28 9 0.11
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
TAAAATTACCCAAATACCCTCGATTTG
Found at i:97939136 original size:54 final size:54
Alignment explanation
Indices: 97938974--97939137 Score: 172
Period size: 54 Copynumber: 3.1 Consensus size: 54
97938964 GTTTAGAATA
* *
97938974 CCTTAGTTTACAAAATTACTGAAATATCCC-C-AGTTATAAAATTACCAAAGTAC
1 CCTTAGTTTACAAAATTACTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTAC
** * ** * * *
97939027 CCCCAGTTTATAAAATTACCCAAATATCATCGATTTGTAAAATTACCGAAA-TAC
1 CCTTAGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTACC-AAAGTAC
* * *
97939081 CCTTTGTTTGCAAAATTACTGAAATACCCTCGACTTGTAAAATTATCAAAGTAC
1 CCTTAGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTAC
97939135 CCT
1 CCT
97939138 CGAATTAAAA
Statistics
Matches: 87, Mismatches: 20, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
52 1 0.01
53 25 0.29
54 58 0.67
55 3 0.03
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (54 bp):
CCTTAGTTTACAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTAC
Found at i:97939149 original size:27 final size:27
Alignment explanation
Indices: 97939092--97939155 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 27
97939082 CTTTGTTTGC
* * **
97939092 AAAATTACTGAAATACCCTCGACTTGT
1 AAAATTACTCAAATACCCTCGAATTAA
97939119 AAAATTA-TCAAAGTACCCTCGAATTAAA
1 AAAATTACTCAAA-TACCCTCGAATT-AA
97939147 AAAATTACT
1 AAAATTACT
97939156 GTTTTACCTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
26 4 0.13
27 18 0.60
28 7 0.23
29 1 0.03
ACGTcount: A:0.45, C:0.19, G:0.08, T:0.28
Consensus pattern (27 bp):
AAAATTACTCAAATACCCTCGAATTAA
Found at i:97939195 original size:27 final size:27
Alignment explanation
Indices: 97939132--97939596 Score: 552
Period size: 27 Copynumber: 17.2 Consensus size: 27
97939122 ATTATCAAAG
* * *
97939132 TACCCTCGAATTAAAAAAATTACTGTTT
1 TACCCTCG-ATTTACAAAATTACTATTT
*
97939160 TACCTTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * * **
97939187 CACCCTCGATTGACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
97939214 TACCCTCGATTGATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
97939241 TACCCCCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
97939268 TACCCTCAATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
**
97939295 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
97939322 TACCCTCAATTTATAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
97939349 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
97939376 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
97939403 TACCTTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
97939430 TACCCTTGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
97939457 TACCCTCGATTGATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
97939484 TACCCTCGATTTAAAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
97939511 TACCCTCGATTTACAAAATTATTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* **
97939538 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
97939565 TACCCTCAATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
97939592 TACCC
1 TACCC
97939597 CTAGGGTGTT
Statistics
Matches: 378, Mismatches: 59, Indels: 1
0.86 0.13 0.00
Matches are distributed among these distances:
27 371 0.98
28 7 0.02
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:97939877 original size:27 final size:26
Alignment explanation
Indices: 97939833--97939884 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
97939823 CTCGCTGCAA
*
97939833 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
97939860 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
97939885 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:97940132 original size:6 final size:6
Alignment explanation
Indices: 97940101--97940179 Score: 63
Period size: 6 Copynumber: 12.8 Consensus size: 6
97940091 TTGCATTCAC
* *
97940101 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
97940150 -TCACCTG ATTTTG ATTCTG GTTCTG ATTCT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCT
97940180 AGTTCTTATA
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
5 3 0.05
6 46 0.81
7 6 0.11
8 2 0.04
ACGTcount: A:0.16, C:0.18, G:0.16, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:97940132 original size:25 final size:25
Alignment explanation
Indices: 97940104--97940174 Score: 76
Period size: 25 Copynumber: 2.8 Consensus size: 25
97940094 CATTCACATT
97940104 CTGATTTTGATTCTG-TTACCTGAT-A-
1 CTGATTTTGATTCTGATT--CTG-TCAC
*
97940129 CTGATTCTGATTCTGATTCTGTCAC
1 CTGATTTTGATTCTGATTCTGTCAC
*
97940154 CTGATTTTGATTCTGGTTCTG
1 CTGATTTTGATTCTGATTCTG
97940175 ATTCTAGTTC
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
23 1 0.03
24 4 0.10
25 33 0.82
26 2 0.05
ACGTcount: A:0.15, C:0.18, G:0.18, T:0.48
Consensus pattern (25 bp):
CTGATTTTGATTCTGATTCTGTCAC
Found at i:97940136 original size:31 final size:31
Alignment explanation
Indices: 97940101--97940179 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
97940091 TTGCATTCAC
* *
97940101 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
**
97940132 ATTCTGATTCTGATTCTGTCACCTGATTTTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
*
97940163 ATTCTGGTTCTGATTCT
1 ATTCTGATTCTGATTCT
97940180 AGTTCTTATA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 43 1.00
ACGTcount: A:0.16, C:0.18, G:0.16, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:97942192 original size:26 final size:26
Alignment explanation
Indices: 97942163--97942259 Score: 88
Period size: 27 Copynumber: 3.7 Consensus size: 26
97942153 TTAGTTTACC
**
97942163 AAATTACTGAAATACCCCCAGTTATA
1 AAATTACCCAAATACCCCCAGTTATA
*
97942189 AAATTA-CCAAAGTACCCCTAGTTTATA
1 AAATTACCCAAA-TACCCCCAG-TTATA
* * * *
97942216 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACCCAAATA-CCCCCAGTTATA
*
97942243 AAATTACCGAAATACCC
1 AAATTACCCAAATACCC
97942260 TTTGTTTGCA
Statistics
Matches: 58, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
25 3 0.05
26 16 0.28
27 30 0.52
28 9 0.16
ACGTcount: A:0.41, C:0.24, G:0.07, T:0.28
Consensus pattern (26 bp):
AAATTACCCAAATACCCCCAGTTATA
Found at i:97942267 original size:27 final size:28
Alignment explanation
Indices: 97942187--97942302 Score: 98
Period size: 27 Copynumber: 4.3 Consensus size: 28
97942177 CCCCCAGTTA
* * *
97942187 TAAAATTACC-AAAGTACCCCTAG-TTTA
1 TAAAATTACCGAAA-TACCCTTCGATTTG
* *
97942214 TAAAATTACCCAAATATCC-TCGATTTG
1 TAAAATTACCGAAATACCCTTCGATTTG
*
97942241 TAAAATTACCGAAATACCCTTTG-TTTG
1 TAAAATTACCGAAATACCCTTCGATTTG
* ** *
97942268 CAAAATTATTGAAATA-CCTTCGACTTG
1 TAAAATTACCGAAATACCCTTCGATTTG
97942295 TAAAATTA
1 TAAAATTA
97942303 TCAAAGTACC
Statistics
Matches: 73, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
26 7 0.10
27 61 0.84
28 5 0.07
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.34
Consensus pattern (28 bp):
TAAAATTACCGAAATACCCTTCGATTTG
Found at i:97942273 original size:54 final size:54
Alignment explanation
Indices: 97942187--97942312 Score: 139
Period size: 54 Copynumber: 2.3 Consensus size: 54
97942177 CCCCCAGTTA
* *
97942187 TAAAATTACCAAAGTACCCCTAGTTTATAAAATTACCCAAATATCC-TCGATTTG
1 TAAAATTACCAAAGTACCCCTAGTTTACAAAATTACCCAAATA-CCTTCGACTTG
* * * ***
97942241 TAAAATTACCGAAA-TACCCTTTGTTTGCAAAATTATTGAAATACCTTCGACTTG
1 TAAAATTACC-AAAGTACCCCTAGTTTACAAAATTACCCAAATACCTTCGACTTG
*
97942295 TAAAATTATCAAAGTACC
1 TAAAATTACCAAAGTACC
97942313 ATCGAATTAC
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
53 5 0.08
54 52 0.87
55 3 0.05
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.33
Consensus pattern (54 bp):
TAAAATTACCAAAGTACCCCTAGTTTACAAAATTACCCAAATACCTTCGACTTG
Found at i:97942303 original size:27 final size:28
Alignment explanation
Indices: 97942214--97942312 Score: 89
Period size: 27 Copynumber: 3.6 Consensus size: 28
97942204 CCCTAGTTTA
* * *
97942214 TAAAATTACCCAAATATCC-TCGATTTG
1 TAAAATTATCGAAATACCCTTCGATTTG
* *
97942241 TAAAATTACCGAAATACCCTTTG-TTTG
1 TAAAATTATCGAAATACCCTTCGATTTG
* * *
97942268 CAAAATTATTGAAATA-CCTTCGACTTG
1 TAAAATTATCGAAATACCCTTCGATTTG
97942295 TAAAATTATC-AAAGTACC
1 TAAAATTATCGAAA-TACC
97942313 ATCGAATTAC
Statistics
Matches: 58, Mismatches: 10, Indels: 7
0.77 0.13 0.09
Matches are distributed among these distances:
26 8 0.14
27 47 0.81
28 3 0.05
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.33
Consensus pattern (28 bp):
TAAAATTATCGAAATACCCTTCGATTTG
Found at i:97942339 original size:27 final size:27
Alignment explanation
Indices: 97942309--97942772 Score: 586
Period size: 27 Copynumber: 17.2 Consensus size: 27
97942299 ATTATCAAAG
* *
97942309 TACCATCGAATTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
97942336 TACCATTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
97942363 TACCCTCGATTGACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
97942390 TACCCTCGATTGATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
97942417 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
97942444 TACCCTCAATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
97942471 TACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
97942498 TACCCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
**
97942525 TACCCTCGATTTACTGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * * *
97942552 TACCCTCAATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
97942579 TACCTTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* **
97942606 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* * * *
97942633 TACCCTCGATTGATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
97942660 TACCCTCGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
97942687 TACCCTCGATTTACAAAATTATTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
97942714 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
** * *
97942741 TACCCTTAATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
97942768 TACCC
1 TACCC
97942773 CTAGGGTGTT
Statistics
Matches: 391, Mismatches: 46, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 391 1.00
ACGTcount: A:0.31, C:0.20, G:0.06, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:97943053 original size:27 final size:26
Alignment explanation
Indices: 97943009--97943060 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
97942999 CTCGCTGCAA
*
97943009 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
97943036 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
97943061 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:97943313 original size:6 final size:6
Alignment explanation
Indices: 97943277--97943363 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
97943267 TTGCATTCAC
* * *
97943277 ATTCTG AATT-TG ATTCTG -TACCTG ATACTG ATTCTG ATTCTG ATTTTG
1 ATTCTG -ATTCTG ATTCTG AT-TCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
97943325 ATTCT- ATCACCTG ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
97943364 AATGTTTCTT
Statistics
Matches: 65, Mismatches: 7, Indels: 17
0.73 0.08 0.19
Matches are distributed among these distances:
5 7 0.11
6 49 0.75
7 7 0.11
8 2 0.03
ACGTcount: A:0.21, C:0.17, G:0.15, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:97945469 original size:43 final size:43
Alignment explanation
Indices: 97945407--97945490 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
97945397 GTGTCACACG
* * *
97945407 GCTGTGTGTGTAGGTCATGTGACTAATTGTGTGTTGCCACCTA
1 GCTGTATGTGTAGGCCATGTGACTAATTGTGTATTGCCACCTA
97945450 GCTGTATGTGTAGGCCATGTGACTAATTGTGTATTGCCACC
1 GCTGTATGTGTAGGCCATGTGACTAATTGTGTATTGCCACC
97945491 AGGTCATGTG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.18, C:0.18, G:0.29, T:0.36
Consensus pattern (43 bp):
GCTGTATGTGTAGGCCATGTGACTAATTGTGTATTGCCACCTA
Found at i:97947272 original size:25 final size:25
Alignment explanation
Indices: 97947243--97947292 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
97947233 TTAATGTTTG
*
97947243 TTTATACTGATATTTTTCTTTGTAA
1 TTTATACCGATATTTTTCTTTGTAA
97947268 TTTATACCGATATTTTTCTTTGTAA
1 TTTATACCGATATTTTTCTTTGTAA
97947293 ATAGTAAGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.24, C:0.10, G:0.08, T:0.58
Consensus pattern (25 bp):
TTTATACCGATATTTTTCTTTGTAA
Found at i:97948462 original size:37 final size:37
Alignment explanation
Indices: 97948421--97948494 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
97948411 CTGTAAGTCT
97948421 GCTTAAGGTCTTGTATTTGGTTTCTGGTGTTTGCAAG
1 GCTTAAGGTCTTGTATTTGGTTTCTGGTGTTTGCAAG
97948458 GCTTAAGGTCTTGTATTTGGTTTCTGGTGTTTGCAAG
1 GCTTAAGGTCTTGTATTTGGTTTCTGGTGTTTGCAAG
97948495 TTAGGAATAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.14, C:0.11, G:0.30, T:0.46
Consensus pattern (37 bp):
GCTTAAGGTCTTGTATTTGGTTTCTGGTGTTTGCAAG
Found at i:97948683 original size:6 final size:6
Alignment explanation
Indices: 97948672--97948699 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
97948662 TCGATAATTC
97948672 TTTTGT TTTTGT TTTTGT TTTTGT TTTT
1 TTTTGT TTTTGT TTTTGT TTTTGT TTTT
97948700 TCAGGCAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (6 bp):
TTTTGT
Found at i:97948802 original size:17 final size:17
Alignment explanation
Indices: 97948780--97948813 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
97948770 TTGCTACTAC
97948780 TTGTTTTCATTTG-TTTT
1 TTGTTTTC-TTTGCTTTT
97948797 TTGTTTTCTTTGCTTTT
1 TTGTTTTCTTTGCTTTT
97948814 CAATTAGCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.03, C:0.09, G:0.12, T:0.76
Consensus pattern (17 bp):
TTGTTTTCTTTGCTTTT
Found at i:97949957 original size:6 final size:6
Alignment explanation
Indices: 97949942--97950378 Score: 504
Period size: 6 Copynumber: 73.2 Consensus size: 6
97949932 TGGTATTAGG
* * *
97949942 TAATAA TAATAG TAATAA TAATAA TAATAG TAATAA TAATAA TAATCA
1 TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA
* * *
97949990 TAATAA TAATAG TAATAA TAATAA TAGTAA TAATAG TAATAA TAATAA
1 TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA
*
97950038 TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA T-CTAA
1 TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA
*
97950085 TAATAA TAAT-A TAATAA TAATAA TAGTAA TAAT-A TAATAA TATATAA
1 TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TA-ATAA
* * * * * *
97950132 TAGTAA TAGTAA TAATAA TAATAG TAATAG TAATAA TAATAG TAATAG
1 TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA
* * * * *
97950180 TATTAT TAATAA TAATAG TATTAA TAATAA TAATAA TAATAG TAATAA
1 TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA
* * * * * * * *
97950228 TAATAG TAATAG TAATAG TAATAG TAATAG TAAAAA TAGTAA TAGTAA
1 TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA
* * * * * *
97950276 TAGTAA TAGTAA TAGA-AA TAGTAA TAGTAA TAGTAA TAGTAA TAATAA
1 TAATAA TAATAA TA-ATAA TAATAA TAATAA TAATAA TAATAA TAATAA
* * *
97950324 TAATAA TAGTAA TAGTAA TAATAA TAATAG TAATAA TAATAA TAATAA
1 TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA
97950372 TAATAA T
1 TAATAA T
97950379 GTTTATGCAA
Statistics
Matches: 382, Mismatches: 43, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
5 14 0.04
6 362 0.95
7 6 0.02
ACGTcount: A:0.58, C:0.00, G:0.07, T:0.34
Consensus pattern (6 bp):
TAATAA
Found at i:97953316 original size:251 final size:256
Alignment explanation
Indices: 97952864--97953360 Score: 801
Period size: 251 Copynumber: 2.0 Consensus size: 256
97952854 GGTGTTACAA
* *
97952864 ACAATGCAAGTGGTTGCCTTGATTTCAATGGCATTAGAGGGTGCTGGTACTGGTGTTGTACTATC
1 ACAATGCAAGTGGTTGCCTTGATTTCAATGGCATTAGAGAGTGCTGG-ACTGGTGCTGTACTATC
*
97952929 ATTACTAGATTTAGGGCTATCACTATCAGCAACATCACCTATGTTTTTAGGGTTAGGAAAAGGGA
65 ATTACTAGATTTAGGGCTATCACTATCAGCAACATCACCTATGTTTTTAGGGCTAGGAAAAGGGA
* * *
97952994 GTCAAAAACTTCATCAGTGGCAGTTGGTGCAGTAGGGGATGAGACCTCCTCAAGAGACTCAACCT
130 GTCAAAAACTTCATCAGTGGCAGTCGGTGAAGTAGGGGATGAGACCTCCTCAAGAGACTCAACCC
* **
97953059 CAGAAGATTATCCTTTGTTGGTGCTAGGGTTGTTC-CTTTTACTAGGGCTAAGGGAAGAGGAG
195 CAGAAGAGTATCCTTTGTTGGCACTAGGGTTG-TCGCTTTTACTAGGGCTAAGGGAAGAGGAG
97953121 ACAATGCAAGTGGTTGCCTTGATTTCAATGGCATTAGA-AG-G-T-G-CTGGTGCTGTACTATCA
1 ACAATGCAAGTGGTTGCCTTGATTTCAATGGCATTAGAGAGTGCTGGACTGGTGCTGTACTATCA
* * *
97953181 TTACTAGATTTAGGGCTATCACTATCAGCGACATCACCTGTGTTTTTAGGGCTAGGAGAAGGGAG
66 TTACTAGATTTAGGGCTATCACTATCAGCAACATCACCTATGTTTTTAGGGCTAGGAAAAGGGAG
*
97953246 TCAAAAACTTCATCAGTGGCAGTCGGTGAAAG-AGGGGATGAGACCTCCTCAAGAGACTTAACCC
131 TCAAAAACTTCATCAGTGGCAGTCGGTG-AAGTAGGGGATGAGACCTCCTCAAGAGACTCAACCC
97953310 CAGAAGAGTATCCTTTGTTGGCACTAGGGTTGTCGCTTTTACTAGGGCTAA
195 CAGAAGAGTATCCTTTGTTGGCACTAGGGTTGTCGCTTTTACTAGGGCTAA
97953361 TGCAAAAGGA
Statistics
Matches: 225, Mismatches: 13, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
250 2 0.01
251 179 0.80
252 2 0.01
253 1 0.00
254 1 0.00
255 1 0.00
256 1 0.00
257 38 0.17
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (256 bp):
ACAATGCAAGTGGTTGCCTTGATTTCAATGGCATTAGAGAGTGCTGGACTGGTGCTGTACTATCA
TTACTAGATTTAGGGCTATCACTATCAGCAACATCACCTATGTTTTTAGGGCTAGGAAAAGGGAG
TCAAAAACTTCATCAGTGGCAGTCGGTGAAGTAGGGGATGAGACCTCCTCAAGAGACTCAACCCC
AGAAGAGTATCCTTTGTTGGCACTAGGGTTGTCGCTTTTACTAGGGCTAAGGGAAGAGGAG
Found at i:97958888 original size:26 final size:26
Alignment explanation
Indices: 97958853--97958903 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
97958843 AATGTGAAAG
*
97958853 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
97958879 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
97958904 TTCATTGGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:97959001 original size:103 final size:104
Alignment explanation
Indices: 97958775--97959141 Score: 618
Period size: 102 Copynumber: 3.6 Consensus size: 104
97958765 TGTATATAAA
** * * *
97958775 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
97958839 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
97958878 AGGGGTTGCTAAGTGCTGATTCCCCG-TTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
97958942 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
97958981 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
*
97959046 TGAAA--TAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
97959083 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
97959142 ATAACGGTTA
Statistics
Matches: 253, Mismatches: 8, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
102 154 0.61
103 56 0.22
104 43 0.17
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:97966575 original size:26 final size:26
Alignment explanation
Indices: 97966540--97966591 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
97966530 AATGAGAAAG
*
97966540 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
97966566 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
97966592 TTCATTGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:97966614 original size:103 final size:104
Alignment explanation
Indices: 97966358--97966726 Score: 618
Period size: 103 Copynumber: 3.6 Consensus size: 104
97966348 TGTATATAAA
** * * *
97966358 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
*
97966422 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGAGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
97966462 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
97966527 TGAAATGAGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
66 TGAAATGAGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
97966565 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
*
97966630 TGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGAGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* **
97966668 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGGGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
97966727 ATAACGGCTA
Statistics
Matches: 253, Mismatches: 10, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
102 25 0.10
103 137 0.54
104 90 0.36
105 1 0.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGAGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:97969523 original size:27 final size:27
Alignment explanation
Indices: 97969488--97969598 Score: 145
Period size: 27 Copynumber: 4.1 Consensus size: 27
97969478 AGCATGGCTG
*
97969488 CCAGAACAGATAA-TGTGACAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
97969514 CCAGATACAGATAATTGTGGCAGAACCA
1 CCAGA-ACAGATAATTGTGGCAGAGCCA
*
97969542 CCAGAACAGAT-ATATGTGGCTGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
97969569 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
97969596 CCA
1 CCA
97969599 AGACGCTTCC
Statistics
Matches: 74, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 7 0.09
27 49 0.66
28 18 0.24
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:97969552 original size:54 final size:54
Alignment explanation
Indices: 97969488--97969598 Score: 170
Period size: 54 Copynumber: 2.1 Consensus size: 54
97969478 AGCATGGCTG
97969488 CCAGAACAGATA-ATGTGACAGAGCCACCAGATACAGATAATTGTGGCAGAACCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATTGTGGCAGAACCA
* * * *
97969542 CCAGAACAGATATATGTGGCTGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCAGAACCA
97969596 CCA
1 CCA
97969599 AGACGCTTCC
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATTGTGGCAGAACCA
Found at i:97971105 original size:24 final size:24
Alignment explanation
Indices: 97971032--97971098 Score: 107
Period size: 24 Copynumber: 2.8 Consensus size: 24
97971022 ACTCAGTTCA
97971032 CCCTAATCAGCTCCTAAATCCTCT
1 CCCTAATCAGCTCCTAAATCCTCT
* *
97971056 CCCTGATCAACTCCTAAATCCTCT
1 CCCTAATCAGCTCCTAAATCCTCT
*
97971080 CCCTTATCAGCTCCTAAAT
1 CCCTAATCAGCTCCTAAAT
97971099 TTTCTCCAGA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.25, C:0.40, G:0.04, T:0.30
Consensus pattern (24 bp):
CCCTAATCAGCTCCTAAATCCTCT
Found at i:97971538 original size:17 final size:18
Alignment explanation
Indices: 97971505--97971540 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
97971495 CATGTTGTAG
97971505 GCCCGTATGGACCCACAT
1 GCCCGTATGGACCCACAT
*
97971523 GCCCGTGTGG-CCCACAT
1 GCCCGTATGGACCCACAT
97971540 G
1 G
97971541 ACCCAAATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.17, C:0.39, G:0.28, T:0.17
Consensus pattern (18 bp):
GCCCGTATGGACCCACAT
Found at i:97978967 original size:16 final size:17
Alignment explanation
Indices: 97978943--97978976 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
97978933 TAGTAGTAAG
*
97978943 ATCTGTCTTAGGT-TTT
1 ATCTCTCTTAGGTATTT
97978959 ATCTCTCTTAGGTATTT
1 ATCTCTCTTAGGTATTT
97978976 A
1 A
97978977 GGGAGTTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.18, C:0.15, G:0.15, T:0.53
Consensus pattern (17 bp):
ATCTCTCTTAGGTATTT
Found at i:97984466 original size:22 final size:21
Alignment explanation
Indices: 97984431--97984542 Score: 62
Period size: 19 Copynumber: 5.7 Consensus size: 21
97984421 AAAAGGTATC
* *
97984431 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
97984452 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
97984475 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
**
97984494 T--GTATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
97984511 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
97984530 TGC-AATCATATCT
1 TACAAATCATATCT
97984543 AAGATTGTAT
Statistics
Matches: 78, Mismatches: 7, Indels: 13
0.80 0.07 0.13
Matches are distributed among these distances:
17 16 0.21
18 6 0.08
19 27 0.35
20 1 0.01
21 3 0.04
22 15 0.19
23 10 0.13
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:97984474 original size:23 final size:22
Alignment explanation
Indices: 97984431--97984488 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
97984421 AAAAGGTATC
* *
97984431 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
97984452 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
97984475 TGCATATCATATCT
1 TACAAATCATATCT
97984489 AAGATTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:97984491 original size:19 final size:19
Alignment explanation
Indices: 97984467--97984571 Score: 175
Period size: 17 Copynumber: 5.8 Consensus size: 19
97984457 AATCATATCT
97984467 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
97984486 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
97984503 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
97984522 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
97984540 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
97984557 TCTAAGATTGCATAT
1 TCTAAGATTGCATAT
97984572 TGAAGATTAT
Statistics
Matches: 81, Mismatches: 0, Indels: 10
0.89 0.00 0.11
Matches are distributed among these distances:
17 33 0.41
18 16 0.20
19 32 0.40
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:97984548 original size:54 final size:53
Alignment explanation
Indices: 97984460--97984571 Score: 199
Period size: 54 Copynumber: 2.1 Consensus size: 53
97984450 ATTACAAAAT
97984460 CATATCTTCTAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTG
1 CATATCTTCTAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTG
97984513 CATATCATATCTAAGATTGCA-ATCATATCTAAGATTGTATCATATCTAAGATTG
1 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTG
97984567 CATAT
1 CATAT
97984572 TGAAGATTAT
Statistics
Matches: 57, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
53 6 0.11
54 39 0.68
55 12 0.21
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (53 bp):
CATATCTTCTAAGATTGCATATCATATCTAAGATTGTATCATATCTAAGATTG
Found at i:97985453 original size:16 final size:17
Alignment explanation
Indices: 97985424--97985462 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
97985414 TTTTATAAAA
*
97985424 TATATTTAAAACTAT-T
1 TATATATAAAACTATAT
*
97985440 TATATATAATACTATAT
1 TATATATAAAACTATAT
97985457 TATATA
1 TATATA
97985463 AAATTTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (17 bp):
TATATATAAAACTATAT
Found at i:97988233 original size:6 final size:6
Alignment explanation
Indices: 97988222--97988250 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
97988212 ATATAATATA
97988222 TTAAAT TTAAAT TTAAAT TTAAAT TTAAA
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAA
97988251 ATATAAATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (6 bp):
TTAAAT
Found at i:97991922 original size:31 final size:31
Alignment explanation
Indices: 97991884--97991951 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
97991874 TTCACTTTTG
*
97991884 CTTTTTAATTGTTTCTTATTAATTGTTATCT
1 CTTTTTAATAGTTTCTTATTAATTGTTATCT
* *
97991915 CTTTTTAATAGTTTTTTATTACTTGTTATCT
1 CTTTTTAATAGTTTCTTATTAATTGTTATCT
97991946 -TTTTTA
1 CTTTTTA
97991952 TTAAAAGATT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
30 6 0.18
31 28 0.82
ACGTcount: A:0.19, C:0.09, G:0.06, T:0.66
Consensus pattern (31 bp):
CTTTTTAATAGTTTCTTATTAATTGTTATCT
Found at i:97992551 original size:22 final size:22
Alignment explanation
Indices: 97992523--97992577 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
97992513 GAATAGTACC
* * *
97992523 ACACGCCCGTGTGGCTAATTTG
1 ACACGCCCGTGTGACTAATCTA
*
97992545 ACACGCCTGTGTGACTAATCTA
1 ACACGCCCGTGTGACTAATCTA
97992567 ACACGCCCGTG
1 ACACGCCCGTG
97992578 GAGGGCAATC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.22, C:0.31, G:0.24, T:0.24
Consensus pattern (22 bp):
ACACGCCCGTGTGACTAATCTA
Found at i:97994508 original size:20 final size:20
Alignment explanation
Indices: 97994475--97994512 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
97994465 TTTTAGTTTA
*
97994475 TTTTAAATACTATTCAATTTT
1 TTTTAAATAATATT-AATTTT
97994496 TTTTAAA-AATATTAATT
1 TTTTAAATAATATTAATT
97994513 GTATAAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 5 0.31
21 7 0.44
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.55
Consensus pattern (20 bp):
TTTTAAATAATATTAATTTT
Found at i:97994602 original size:27 final size:25
Alignment explanation
Indices: 97994566--97994626 Score: 61
Period size: 27 Copynumber: 2.3 Consensus size: 25
97994556 TTTTTTATTA
*
97994566 TTTATTTATAAAT-TACATGTTATTATAT
1 TTTA-TTATAAATATA-ATATTATT-T-T
*
97994594 TTTATTATATATATAATATTATTTT
1 TTTATTATAAATATAATATTATTTT
97994619 TTTATTAT
1 TTTATTAT
97994627 GTATTATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
25 9 0.30
26 1 0.03
27 14 0.47
28 6 0.20
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (25 bp):
TTTATTATAAATATAATATTATTTT
Found at i:97994636 original size:21 final size:22
Alignment explanation
Indices: 97994586--97994636 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
97994576 AATTACATGT
97994586 TATTA-TATTTTATTATATATA
1 TATTATTATTTTATTATATATA
* * *
97994607 TAATATTATTTTTTTAT-TATG
1 TATTATTATTTTATTATATATA
97994628 TATTATTAT
1 TATTATTAT
97994637 CCTTAATTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
21 15 0.60
22 10 0.40
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (22 bp):
TATTATTATTTTATTATATATA
Found at i:97994674 original size:29 final size:28
Alignment explanation
Indices: 97994642--97994736 Score: 74
Period size: 29 Copynumber: 3.4 Consensus size: 28
97994632 ATTATCCTTA
97994642 ATTATAGTATT-CATATTTCATTATAT-TTT
1 ATTATA-TATTACATA-TT-ATTATATATTT
*
97994671 ATTACATATTACATATTATTATATATTT
1 ATTATATATTACATATTATTATATATTT
**
97994699 -TTATATTATTTATCATA-TGGTATATA-TT
1 ATTATA-TA-TTA-CATATTATTATATATTT
97994727 ATTATATATT
1 ATTATATATT
97994737 TTGGTTATAA
Statistics
Matches: 56, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
27 13 0.23
28 15 0.27
29 24 0.43
30 4 0.07
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.57
Consensus pattern (28 bp):
ATTATATATTACATATTATTATATATTT
Found at i:97994697 original size:39 final size:38
Alignment explanation
Indices: 97994662--97994738 Score: 104
Period size: 39 Copynumber: 2.0 Consensus size: 38
97994652 TCATATTTCA
*
97994662 TTATATTTTATTA-CATAT-TACATATTATTATATATTT
1 TTATATTAT-TTATCATATGTACATATTATTATATATTT
*
97994699 TTATATTATTTATCATATGGTATATATTATTATATATTT
1 TTATATTATTTATCATAT-GTACATATTATTATATATTT
97994738 T
1 T
97994739 GGTTATAAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 3 0.09
37 13 0.37
39 19 0.54
ACGTcount: A:0.34, C:0.04, G:0.03, T:0.60
Consensus pattern (38 bp):
TTATATTATTTATCATATGTACATATTATTATATATTT
Found at i:97995935 original size:16 final size:17
Alignment explanation
Indices: 97995903--97995936 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
97995893 TCAAAAGTCG
*
97995903 ATTCCCGTTTTTCAAAA
1 ATTCCCGTTTTTAAAAA
97995920 ATTCCCG-TTTTAAAAA
1 ATTCCCGTTTTTAAAAA
97995936 A
1 A
97995937 AAATGGTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.38
Consensus pattern (17 bp):
ATTCCCGTTTTTAAAAA
Found at i:97995936 original size:17 final size:17
Alignment explanation
Indices: 97995903--97995937 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
97995893 TCAAAAGTCG
**
97995903 ATTCCCGTTTTTCAAAA
1 ATTCCCGTTTTAAAAAA
97995920 ATTCCCGTTTTAAAAAA
1 ATTCCCGTTTTAAAAAA
97995937 A
1 A
97995938 AATGGTTTCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.37, C:0.20, G:0.06, T:0.37
Consensus pattern (17 bp):
ATTCCCGTTTTAAAAAA
Found at i:98006964 original size:15 final size:15
Alignment explanation
Indices: 98006944--98006973 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
98006934 GACATAGTTG
98006944 ATTTGGCTTTCACGT
1 ATTTGGCTTTCACGT
98006959 ATTTGGCTTTCACGT
1 ATTTGGCTTTCACGT
98006974 GTTTACGTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.20, G:0.20, T:0.47
Consensus pattern (15 bp):
ATTTGGCTTTCACGT
Found at i:98007036 original size:40 final size:40
Alignment explanation
Indices: 98006985--98007124 Score: 97
Period size: 40 Copynumber: 3.3 Consensus size: 40
98006975 TTTACGTTGA
98006985 AGCAAATCGAAGATGATTTGGCATCTCTGTATTGGCAGGG
1 AGCAAATCGAAGATGATTTGGCATCTCTGTATTGGCAGGG
* * * * *
98007025 AGCAGATCGAAGACATAGCTGATTTGGCTTTCACGTGT-TT-AC-GTTGA
1 AGCAAATCGAAG----A--TGATTTGGC-ATCTC-TGTATTGGCAG--GG
* *
98007072 AGCAAATCTAAGATGATTTGGCATCTCTGTATTGGTAGGG
1 AGCAAATCGAAGATGATTTGGCATCTCTGTATTGGCAGGG
*
98007112 AGCAGATCGAAGA
1 AGCAAATCGAAGA
98007125 CATAGCTGAT
Statistics
Matches: 73, Mismatches: 14, Indels: 26
0.65 0.12 0.23
Matches are distributed among these distances:
39 3 0.04
40 28 0.38
41 9 0.12
42 1 0.01
43 1 0.01
44 1 0.01
45 1 0.01
46 10 0.14
47 16 0.22
48 3 0.04
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.29
Consensus pattern (40 bp):
AGCAAATCGAAGATGATTTGGCATCTCTGTATTGGCAGGG
Found at i:98007038 original size:102 final size:102
Alignment explanation
Indices: 98006857--98007060 Score: 363
Period size: 102 Copynumber: 2.0 Consensus size: 102
98006847 GACATAGCTG
* * *
98006857 ATTTGGCTTTCATGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGG
1 ATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCGAAGATGATTTGGCATCTCTGTATTGGCAGG
*
98006922 GAGCAGATCAAAGACATAGTTGATTTGGCTTTCACGT
66 GAGCAGATCAAAGACATAGCTGATTTGGCTTTCACGT
98006959 ATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCGAAGATGATTTGGCATCTCTGTATTGGCAGG
1 ATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCGAAGATGATTTGGCATCTCTGTATTGGCAGG
*
98007024 GAGCAGATCGAAGACATAGCTGATTTGGCTTTCACGT
66 GAGCAGATCAAAGACATAGCTGATTTGGCTTTCACGT
98007061 GTTTACGTTG
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
102 97 1.00
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.34
Consensus pattern (102 bp):
ATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCGAAGATGATTTGGCATCTCTGTATTGGCAGG
GAGCAGATCAAAGACATAGCTGATTTGGCTTTCACGT
Found at i:98007105 original size:87 final size:87
Alignment explanation
Indices: 98006959--98007385 Score: 728
Period size: 87 Copynumber: 4.9 Consensus size: 87
98006949 GCTTTCACGT
* *
98006959 ATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCGAAGATGATTTGGCATCTCTGTATTGGCAGG
1 ATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGG
98007024 GAGCAGATCGAAGACATAGCTG
66 GAGCAGATCGAAGACATAGCTG
* *
98007046 ATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGGTAGG
1 ATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGG
98007111 GAGCAGATCGAAGACATAGCTG
66 GAGCAGATCGAAGACATAGCTG
98007133 ATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGG
1 ATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGG
*
98007198 AAGCAGATCGAAGACATAGCTG
66 GAGCAGATCGAAGACATAGCTG
* *
98007220 ATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCGTCTTTGTATTGGCAAG
1 ATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGG
* * *
98007285 GAGTAGATCAAAGACATAACTG
66 GAGCAGATCGAAGACATAGCTG
* * * *
98007307 ATTTGGCTTTCACATGTTTACGTTGAAGCAAATCCAAGATGATTTGGCGTCTCTGTATTGTCAGA
1 ATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGG
98007372 GAGCAGATCGAAGA
66 GAGCAGATCGAAGA
98007386 TAACAGATTT
Statistics
Matches: 321, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
87 321 1.00
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (87 bp):
ATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCGTCTCTGTATTGGCAGG
GAGCAGATCGAAGACATAGCTG
Found at i:98007506 original size:78 final size:78
Alignment explanation
Indices: 98007391--98007685 Score: 493
Period size: 78 Copynumber: 3.8 Consensus size: 78
98007381 GAAGATAACA
** * *
98007391 GATTTGGCATCTCCATATTCGACGGAGAGCAAATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACATAGCAGATCTGACCTTCATTGAA
98007456 GCAGATCCAAGAT
66 GCAGATCCAAGAT
*
98007469 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACACAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACATAGCAGATCTGACCTTCATTGAA
98007534 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * *
98007547 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGACATAACAGAT-TAGACCTTCATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACATAGCAGATCT-GACCTTCATTGA
98007611 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
*
98007625 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACATAGCAGATCTGACCTTCAT
98007686 GTGTTTACAT
Statistics
Matches: 204, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
77 1 0.00
78 202 0.99
79 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGACATAGCAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:98007825 original size:89 final size:89
Alignment explanation
Indices: 98007716--98007884 Score: 268
Period size: 89 Copynumber: 1.9 Consensus size: 89
98007706 CGAAGATGAT
*
98007716 AGATTTGGCATCTCTATATTAGA-TGGGGAGCAAATCGGAGATAACAGATTTGGCATCTCTGTAT
1 AGATTTGGCATCTCTATATTAGACT-GGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAT
98007780 TAGACGGGGAGCAGATTGAAGAAGC
65 TAGACGGGGAGCAGATTGAAGAAGC
* * * *
98007805 AGATTTGGCGTCTCTGTATTAGACTGGGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATT
1 AGATTTGGCATCTCTATATTAGACTGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATT
*
98007870 AGACGGGGAGTAGAT
66 AGACGGGGAGCAGAT
98007885 AAAAGATAGA
Statistics
Matches: 73, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
89 72 0.99
90 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.30, T:0.27
Consensus pattern (89 bp):
AGATTTGGCATCTCTATATTAGACTGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATT
AGACGGGGAGCAGATTGAAGAAGC
Found at i:98007870 original size:134 final size:136
Alignment explanation
Indices: 98007625--98007879 Score: 338
Period size: 134 Copynumber: 1.9 Consensus size: 136
98007615 GATCCAAGAT
*
98007625 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATGTGT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGA-ATAGCAGATCTGACCTTCATGTAT
* * * *
98007690 TTACATCGAAGCAGATCGAAGATGATAGATTTGGCATCTCTATATTAGATGGGGAGCAAATCGGA
65 TGACATCGAAGCAGATCGAAGATAACAGATTTGGCATCTCTATATTAGACGGGGAGCAAATCGGA
98007755 GATAACA
130 GATAACA
* * * *
98007762 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAG-A-AGCAGATTTGGCGTCTC-TGTAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGAATAGCAGATCTGACCT-TCATGTAT
* * * *
98007824 TAGAC-TGGGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTATTAGACGGGGAG
65 T-GACATCGAAGCAGATCGAAGATAACAGATTTGGCATCTCTATATTAGACGGGGAG
98007880 TAGATAAAAG
Statistics
Matches: 103, Mismatches: 13, Indels: 7
0.84 0.11 0.06
Matches are distributed among these distances:
134 60 0.58
135 5 0.05
137 38 0.37
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (136 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGAATAGCAGATCTGACCTTCATGTATT
GACATCGAAGCAGATCGAAGATAACAGATTTGGCATCTCTATATTAGACGGGGAGCAAATCGGAG
ATAACA
Found at i:98007892 original size:45 final size:45
Alignment explanation
Indices: 98007625--98007884 Score: 276
Period size: 45 Copynumber: 5.8 Consensus size: 45
98007615 GATCCAAGAT
*
98007625 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA
* * * * * * * *
98007672 GATCTGACCT-TCATGTGTTTACATC--GAAGCAGATCGAAGATGATA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACA
* * * *
98007717 GATTTGGCATCTCTATATTAGATGGGGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* *
98007762 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* *
98007806 GATTTGGCGTCTCTGTATTAGACTGGGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* *
98007851 GATTTGGCGTCTCTGTATTAGACGGGGAGTAGAT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGAT
98007885 AAAAGATAGA
Statistics
Matches: 173, Mismatches: 33, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
44 44 0.25
45 97 0.56
46 4 0.02
47 23 0.13
48 4 0.02
49 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.27
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:98009531 original size:20 final size:21
Alignment explanation
Indices: 98009493--98009531 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
98009483 TTTTAGTTTA
* *
98009493 TTTTAAATACTATTCAATTTT
1 TTTTAAAAAATATTCAATTTT
98009514 TTTTAAAAAATATT-AATT
1 TTTTAAAAAATATTCAATT
98009532 GTATAAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (21 bp):
TTTTAAAAAATATTCAATTTT
Found at i:98009610 original size:3 final size:3
Alignment explanation
Indices: 98009604--98009659 Score: 53
Period size: 3 Copynumber: 18.3 Consensus size: 3
98009594 AAATTACATG
* *
98009604 TTA TTA -TA TT- TTA TTA TATA TATA ATA TTA TTA TTA TTT TTA TTA
1 TTA TTA TTA TTA TTA TTA T-TA T-TA TTA TTA TTA TTA TTA TTA TTA
98009649 TGTA TTA TTA T
1 T-TA TTA TTA T
98009660 CCTTATTTAT
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
2 4 0.09
3 32 0.71
4 9 0.20
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:98009621 original size:27 final size:28
Alignment explanation
Indices: 98009576--98009649 Score: 89
Period size: 27 Copynumber: 2.6 Consensus size: 28
98009566 ATTATATTTT
* *
98009576 TTATTATTATTTTTTTATAAAT-TACATG
1 TTATTATTATTTTATTATAAATATA-ATA
*
98009604 TTATTA-TATTTTATTATATATATAATA
1 TTATTATTATTTTATTATAAATATAATA
98009631 TTATTATTATTTTTATTAT
1 TTATTATTA-TTTTATTAT
98009650 GTATTATTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
27 21 0.52
28 10 0.25
29 9 0.22
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (28 bp):
TTATTATTATTTTATTATAAATATAATA
Done.