Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 289 of 295
Found at i:98009709 original size:17 final size:17
Alignment explanation
Indices: 98009684--98009720 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
98009674 TTCATATTTC
*
98009684 ATTATATTTTATTACAT
1 ATTACATTTTATTACAT
*
98009701 ATTACATTTTATTATAT
1 ATTACATTTTATTACAT
98009718 ATT
1 ATT
98009721 TTTATATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTACATTTTATTACAT
Found at i:98009720 original size:39 final size:38
Alignment explanation
Indices: 98009685--98009761 Score: 95
Period size: 39 Copynumber: 2.0 Consensus size: 38
98009675 TCATATTTCA
* *
98009685 TTATATTTTATTA-CATAT-TACATTTTATTATATATTT
1 TTATATTAT-TTATCATATGTACATATTATTATATATTT
*
98009722 TTATATTATTTATCATATGGTATATATTATTATATATTT
1 TTATATTATTTATCATAT-GTACATATTATTATATATTT
98009761 T
1 T
98009762 GGTTATAAGT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 3 0.09
37 13 0.38
39 18 0.53
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.61
Consensus pattern (38 bp):
TTATATTATTTATCATATGTACATATTATTATATATTT
Found at i:98009757 original size:10 final size:10
Alignment explanation
Indices: 98009604--98009759 Score: 84
Period size: 10 Copynumber: 16.2 Consensus size: 10
98009594 AAATTACATG
*
98009604 TTATTATATT
1 TTATTATATA
98009614 TTATTATATA
1 TTATTATATA
*
98009624 -TATAATATTA
1 TTATTATA-TA
*
98009634 TTATTAT-TT
1 TTATTATATA
*
98009643 TTATTATGTA
1 TTATTATATA
**
98009653 TTATTAT-CC
1 TTATTATATA
98009662 TTATT-TATA
1 TTATTATATA
*
98009671 GTATTCATAT-
1 TTATT-ATATA
*
98009681 TTCATTATATT
1 TT-ATTATATA
*
98009692 TTATTACATA
1 TTATTATATA
*
98009702 TTA-CAT-T-
1 TTATTATATA
98009709 TTATTATATA
1 TTATTATATA
98009719 TT-TT-TATA
1 TTATTATATA
98009727 TTATT-TATCA
1 TTATTATAT-A
98009737 -TATGGTATATA
1 TTAT--TATATA
98009748 TTATTATATA
1 TTATTATATA
98009758 TT
1 TT
98009760 TTGGTTATAA
Statistics
Matches: 113, Mismatches: 16, Indels: 34
0.69 0.10 0.21
Matches are distributed among these distances:
7 3 0.03
8 10 0.09
9 35 0.31
10 44 0.39
11 15 0.13
12 6 0.05
ACGTcount: A:0.33, C:0.04, G:0.03, T:0.60
Consensus pattern (10 bp):
TTATTATATA
Found at i:98012652 original size:19 final size:20
Alignment explanation
Indices: 98012618--98012655 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
98012608 AGTCCTTTCA
98012618 CTAAATTAACCTTAATTAAG
1 CTAAATTAACCTTAATTAAG
*
98012638 CTAAATTTA-CTTAATTAA
1 CTAAATTAACCTTAATTAA
98012656 AATCTAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.45, C:0.13, G:0.03, T:0.39
Consensus pattern (20 bp):
CTAAATTAACCTTAATTAAG
Found at i:98012936 original size:6 final size:6
Alignment explanation
Indices: 98012927--98012952 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
98012917 TATATTATAT
98012927 TTTAAA TTTAAA TTTAAA TTTAAA TT
1 TTTAAA TTTAAA TTTAAA TTTAAA TT
98012953 CAAAATATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:98017825 original size:5 final size:5
Alignment explanation
Indices: 98017817--98017867 Score: 57
Period size: 5 Copynumber: 9.6 Consensus size: 5
98017807 AACCTAAATT
* *
98017817 AATAA AATAA AATAAA TAATAA TATTAA AATAA AACAA AATAA AATAA
1 AATAA AATAA AAT-AA -AATAA -AATAA AATAA AATAA AATAA AATAA
98017865 AAT
1 AAT
98017868 CTTTCTATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
5 28 0.70
6 9 0.22
7 3 0.08
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.24
Consensus pattern (5 bp):
AATAA
Found at i:98017832 original size:18 final size:18
Alignment explanation
Indices: 98017811--98017850 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
98017801 TAGCCTAACC
98017811 TAAATTAATAA-AATAAAA
1 TAAA-TAATAATAATAAAA
*
98017829 TAAATAATAATATTAAAA
1 TAAATAATAATAATAAAA
98017847 TAAA
1 TAAA
98017851 ACAAAATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 6 0.30
18 14 0.70
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (18 bp):
TAAATAATAATAATAAAA
Found at i:98017863 original size:23 final size:23
Alignment explanation
Indices: 98017819--98017863 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
98017809 CCTAAATTAA
*
98017819 TAAAATAAAATAAATAATAATAT
1 TAAAATAAAAAAAATAATAATAT
98017842 TAAAATAAAACAAAATAA-AATA
1 TAAAATAAAA-AAAATAATAATA
98017864 AAATCTTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (23 bp):
TAAAATAAAAAAAATAATAATAT
Found at i:98018459 original size:92 final size:90
Alignment explanation
Indices: 98018290--98018606 Score: 280
Period size: 92 Copynumber: 3.4 Consensus size: 90
98018280 ATTATGTGGG
* * * * **
98018290 AGCCAGTATAAGACCATGTCTGGGACATGGCATCGGCATTAAGACGAGGGCTACTGTAAGATGTG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC--TAAGATGAGTGCTAGTGTAAGACATG
*
98018355 TCTGGGAAATGCATTAGCCTCGATGAT
64 TCTGGGACATGCATTAGCCTCGATGAT
* *
98018382 AGCCAGTGTAAGACCACGTCTGGGACATGGCATCGGCGTAGAGATGAGTGCCAGTGTAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TA-AGATGAGTGCTAGTGTAAGACATG
* * *
98018447 CCTAGGACATGCA-TCGACCTCGATGATGAT
64 TCTGGGACATGCATTAG-CCTC---GATGAT
* * * * ** *
98018477 AGCCAGTGTAAGA-CGTGTCTGGGACA-CGCATAGGCTAAGTTTCGTGCTAGTGTAAGACCATTT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAAGATGAGTGCTAGTGTAAGA-CATGT
*
98018540 CTGGGACATGGCATCAGCCTCGATGGAGAT
65 CTGGGACAT-GCATTAGCCTCGAT---GAT
* * * *
98018570 AGCTAGCGTAAGACCATGTCTAGGACATGGCAGCGGC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
98018607 AACTTAACCC
Statistics
Matches: 179, Mismatches: 33, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
90 3 0.02
91 20 0.11
92 80 0.45
93 28 0.16
94 23 0.13
95 25 0.14
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (90 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAAGATGAGTGCTAGTGTAAGACATGTC
TGGGACATGCATTAGCCTCGATGAT
Found at i:98018502 original size:47 final size:46
Alignment explanation
Indices: 98018376--98018507 Score: 149
Period size: 47 Copynumber: 2.8 Consensus size: 46
98018366 CATTAGCCTC
* * * *
98018376 GATGATAGCCAGTGTAAGACCACGTCTGGGACATGGCATCGGCGTAGA
1 GATGATAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCTCGA
* *
98018424 GATGAGT-GCCAGTGTAAGACATGCCTAGGACATGCATCGACCTCGA
1 GATGA-TAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCTCGA
* *
98018470 TGATGATAGCCAGTGTAAGACGTGTCTGGGACACGCAT
1 -GATGATAGCCAGTGTAAGACATGTCTGGGACATGCAT
98018508 AGGCTAAGTT
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
46 11 0.15
47 42 0.59
48 17 0.24
49 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.20
Consensus pattern (46 bp):
GATGATAGCCAGTGTAAGACATGTCTGGGACATGCATCGACCTCGA
Found at i:98019436 original size:55 final size:55
Alignment explanation
Indices: 98019346--98019472 Score: 139
Period size: 55 Copynumber: 2.3 Consensus size: 55
98019336 AACTTTCAAA
* * ** *
98019346 TTAGTATTGTCCACGGTTAGGCCACATGGGCGTGTGCCATAGCCATG-TCTATAAG
1 TTAGTATTGCCCACGGGTAGGCCACACAGGCGTGTGCCATAGCCATGCCCTA-AAG
* * * *
98019401 TTAGTATTGCCCACGGGTAGGCCACACAGGTGTGTGTCATGGCCGTGCCCTAAAG
1 TTAGTATTGCCCACGGGTAGGCCACACAGGCGTGTGCCATAGCCATGCCCTAAAG
* *
98019456 TCAGTATTGCACACGGG
1 TTAGTATTGCCCACGGG
98019473 CTGAGGAAGT
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
55 57 0.95
56 3 0.05
ACGTcount: A:0.21, C:0.24, G:0.29, T:0.26
Consensus pattern (55 bp):
TTAGTATTGCCCACGGGTAGGCCACACAGGCGTGTGCCATAGCCATGCCCTAAAG
Found at i:98021231 original size:6 final size:6
Alignment explanation
Indices: 98021220--98021244 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
98021210 ATATTATATA
98021220 TTAAAT TTAAAT TTAAAT TTAAAT T
1 TTAAAT TTAAAT TTAAAT TTAAAT T
98021245 CAAAATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TTAAAT
Found at i:98021283 original size:12 final size:12
Alignment explanation
Indices: 98021222--98021283 Score: 51
Period size: 12 Copynumber: 5.2 Consensus size: 12
98021212 ATTATATATT
*
98021222 AAATTTAAATTT
1 AAATTTAAATTA
98021234 AAATTTAAATTCA
1 AAATTTAAATT-A
*
98021247 AAATATAAA-T-
1 AAATTTAAATTA
98021257 AAA--TACAATTAA
1 AAATTTA-AATT-A
98021269 AAATTTAAATTA
1 AAATTTAAATTA
98021281 AAA
1 AAA
98021284 GTAAATTTAG
Statistics
Matches: 41, Mismatches: 2, Indels: 14
0.72 0.04 0.25
Matches are distributed among these distances:
8 2 0.05
9 2 0.05
10 4 0.10
12 19 0.46
13 12 0.29
14 2 0.05
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.35
Consensus pattern (12 bp):
AAATTTAAATTA
Found at i:98021959 original size:19 final size:19
Alignment explanation
Indices: 98021935--98022014 Score: 121
Period size: 19 Copynumber: 4.3 Consensus size: 19
98021925 AATCTTTAAG
98021935 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
98021954 GATATGCAATCTTAGATGT
1 GATATGCAATCTTAGATAT
98021973 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
98021992 GATA--CAAT-TTGAGATAT
1 GATATGCAATCTT-AGATAT
98022009 GATATG
1 GATATG
98022015 ATATGATATG
Statistics
Matches: 56, Mismatches: 2, Indels: 6
0.88 0.03 0.09
Matches are distributed among these distances:
16 2 0.04
17 14 0.25
19 40 0.71
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:98027713 original size:14 final size:12
Alignment explanation
Indices: 98027691--98027758 Score: 50
Period size: 13 Copynumber: 5.4 Consensus size: 12
98027681 CTTCTATTTC
*
98027691 AAAAAAAAAGGA
1 AAAAAAAAAAGA
98027703 AAAAAATAAAAGA
1 AAAAAA-AAAAGA
98027716 AAAAGAGAAAAA-A
1 AAAA-A-AAAAAGA
98027729 ATAAAAAGAAAA-A
1 A-AAAAA-AAAAGA
* *
98027742 AGAGAAAAAAGA
1 AAAAAAAAAAGA
98027754 AAAAA
1 AAAAA
98027759 TGGAGAGGCC
Statistics
Matches: 45, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
11 4 0.09
12 14 0.31
13 18 0.40
14 8 0.18
15 1 0.02
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (12 bp):
AAAAAAAAAAGA
Found at i:98027718 original size:23 final size:22
Alignment explanation
Indices: 98027691--98027751 Score: 79
Period size: 21 Copynumber: 2.8 Consensus size: 22
98027681 CTTCTATTTC
98027691 AAAAAAAAAGGAAAAAAATAAA
1 AAAAAAAAAGGAAAAAAATAAA
* *
98027713 AGAAAAAGA-GAAAAAAATAAA
1 AAAAAAAAAGGAAAAAAATAAA
*
98027734 AAGAAAAAAGAGAAAAAA
1 AAAAAAAAAG-GAAAAAA
98027752 GAAAAAATGG
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
21 18 0.56
22 7 0.22
23 7 0.22
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (22 bp):
AAAAAAAAAGGAAAAAAATAAA
Found at i:98027727 original size:22 final size:22
Alignment explanation
Indices: 98027691--98027751 Score: 92
Period size: 23 Copynumber: 2.9 Consensus size: 22
98027681 CTTCTATTTC
98027691 AAAA-AAAAAG-GAAAAAAAT-
1 AAAAGAAAAAGAGAAAAAAATA
98027710 AAAAGAAAAAGAGAAAAAAATA
1 AAAAGAAAAAGAGAAAAAAATA
98027732 AAAAGAAAAAAGAGAAAAAA
1 AAAAG-AAAAAGAGAAAAAA
98027752 GAAAAAATGG
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.11
20 6 0.16
21 9 0.24
22 5 0.13
23 14 0.37
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (22 bp):
AAAAGAAAAAGAGAAAAAAATA
Found at i:98027756 original size:21 final size:22
Alignment explanation
Indices: 98027694--98027758 Score: 89
Period size: 23 Copynumber: 3.0 Consensus size: 22
98027684 CTATTTCAAA
*
98027694 AAAAAAG-GAAAAAAATAAAAG
1 AAAAAAGAGAAAAAAAAAAAAG
98027715 -AAAAAGAGAAAAAAATAAAAAG
1 AAAAAAGAGAAAAAAA-AAAAAG
98027737 AAAAAAGAGAAAAAAGAAAAAA
1 AAAAAAGAGAAAAAA-AAAAAA
98027759 TGGAGAGGCC
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
20 6 0.15
21 8 0.21
22 5 0.13
23 19 0.49
24 1 0.03
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (22 bp):
AAAAAAGAGAAAAAAAAAAAAG
Found at i:98027756 original size:22 final size:21
Alignment explanation
Indices: 98027694--98027757 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 21
98027684 CTATTTCAAA
98027694 AAAAAAG-GAAAAAAATAAAAG
1 AAAAAAGAGAAAAAAA-AAAAG
98027715 -AAAAAGAGAAAAAAATAAAAAG
1 AAAAAAGAG-AAAAAA-AAAAAG
98027737 AAAAAAGAGAAAAAAGAAAAA
1 AAAAAAGAGAAAAAA-AAAAA
98027758 ATGGAGAGGC
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
20 6 0.16
21 1 0.03
22 22 0.58
23 9 0.24
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.03
Consensus pattern (21 bp):
AAAAAAGAGAAAAAAAAAAAG
Found at i:98028809 original size:44 final size:44
Alignment explanation
Indices: 98028761--98029303 Score: 422
Period size: 44 Copynumber: 12.4 Consensus size: 44
98028751 TATCCAAGAT
* * *
98028761 GATTTGGCATCTCTGTATTGGCAGAAAGCAGATCAAAGACAATA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAATA
* *
98028805 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATGACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAATA
* *
98028849 GATTTGGCATCTCTGTATTTGGCGGAGAGCAGATCGAAGA-CATA
1 GATTTGGCATCTCTGTA-TTGGCAGAGAGCAGATCGAAGATAATA
* * * ** *
98028893 GCTGATTTGGCTTCCACGTGT-TTACGTTGA-AGCA-AGTCTAAG---AT-
1 ---GATTTGGCAT-CTC-TGTATT-GGCAGAGAGCAGA-TCGAAGATAATA
* * **
98028937 GATTTGGCATCTCTGCATTGGAAGAGAGCAGATCGAAGATAGCA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAATA
* *
98028981 GATTTGGCATCTCTGTATTGGCAGAG-GCAGATCAAAGATGATA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAATA
* * *
98029024 GATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGAAGACATAGTT
1 GATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAG--ATAATA
* * ** * *
98029071 GATTTGGCTTC-CATGTGTTTAC-GTTGAAGCA-AGTCTAAG---AT-
1 GATTTGGCATCTC-TGTATTGGCAG-AG-AGCAGA-TCGAAGATAATA
* * **
98029112 GATTTGGCATCTCTGTATTGGAAGAGAGCAGATTGAAGATAGCA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAATA
* * *
98029156 GATTTGGCATCTTTGTATTGGCAGAGAGCAGATCGAAGATGACA
1 GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAATA
* *
98029200 GATTTGGCATCTCTGTATTCGGCGGAGAGCAAATCGAAGATAATA
1 GATTTGGCATCTCTGTATT-GGCAGAGAGCAGATCGAAGATAATA
* * *
98029245 GATTTGG-AGTCTATGTATTGGTAGAGAGTAGATCGAAGATAGA-A
1 GATTTGGCA-TCTCTGTATTGGCAGAGAGCAGATCGAAGATA-ATA
*
98029289 GA-TTGGCGTCTCTGT
1 GATTTGGCATCTCTGT
98029304 TTAGTTAGAG
Statistics
Matches: 397, Mismatches: 68, Indels: 69
0.74 0.13 0.13
Matches are distributed among these distances:
39 5 0.01
40 21 0.05
41 27 0.07
42 3 0.01
43 42 0.11
44 167 0.42
45 72 0.18
46 5 0.01
47 47 0.12
48 5 0.01
49 3 0.01
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (44 bp):
GATTTGGCATCTCTGTATTGGCAGAGAGCAGATCGAAGATAATA
Found at i:98028974 original size:87 final size:85
Alignment explanation
Indices: 98028849--98029163 Score: 341
Period size: 87 Copynumber: 3.6 Consensus size: 85
98028839 GAAGATGACA
** *
98028849 GATTTGGCATCTCTGTATTTGGCGGAGAGCAGATCGAAGACATAGCTGATTTGGCTTCCACGTGT
1 GATTTGGCATCTCTGTA-TTGGAAGAGAGCAGATCGAAG--ATAGCAGATTTGGCTTCCACGTGT
98028914 TTACGTTGAAGCAAGTCTAAGAT
63 TTACGTTGAAGCAAGTCTAAGAT
* * *
98028937 GATTTGGCATCTCTGCATTGGAAGAGAGCAGATCGAAGATAGCAGATTTGGCAT-CTC-TGTATT
1 GATTTGGCATCTCTGTATTGGAAGAGAGCAGATCGAAGATAGCAGATTTGGCTTCCACGTGT-TT
* ** * *
98029000 -GGCAGAGGC-AGATCAAAGATGAT
65 ACGTTGAAGCAAG-TC-TA-A-GAT
** ** *
98029023 AGATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGAAGACATAGTTGATTTGGCTTCCATGTG
1 -GATTTGGCATCTCTGTATT-GGAAGAGAGCAGATCGAAG--ATAGCAGATTTGGCTTCCACGTG
98029088 TTTACGTTGAAGCAAGTCTAAGAT
62 TTTACGTTGAAGCAAGTCTAAGAT
*
98029112 GATTTGGCATCTCTGTATTGGAAGAGAGCAGATTGAAGATAGCAGATTTGGC
1 GATTTGGCATCTCTGTATTGGAAGAGAGCAGATCGAAGATAGCAGATTTGGC
98029164 ATCTTTGTAT
Statistics
Matches: 185, Mismatches: 29, Indels: 29
0.76 0.12 0.12
Matches are distributed among these distances:
82 2 0.01
83 10 0.05
84 5 0.03
85 27 0.15
86 3 0.02
87 53 0.29
88 52 0.28
89 3 0.02
90 14 0.08
91 4 0.02
92 10 0.05
93 2 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (85 bp):
GATTTGGCATCTCTGTATTGGAAGAGAGCAGATCGAAGATAGCAGATTTGGCTTCCACGTGTTTA
CGTTGAAGCAAGTCTAAGAT
Found at i:98029076 original size:175 final size:176
Alignment explanation
Indices: 98028756--98029239 Score: 826
Period size: 175 Copynumber: 2.8 Consensus size: 176
98028746 AAGCATATCC
* * * * **
98028756 AAGATGATTTGGCATCTCTGTATTGGCAGAAAGCAGATCAAAGACAATAGATTTGGCATCTCTGT
1 AAGATGATTTGGCATCTCTGTATTGGAAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGT
*
98028821 ATTGGCAGAGAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTTGGCGGAGAGCAGATCGA
66 ATTGGCAGAGAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGA
98028886 AGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCT
131 AGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCT
*
98028932 AAGATGATTTGGCATCTCTGCATTGGAAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGT
1 AAGATGATTTGGCATCTCTGTATTGGAAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGT
* *
98028997 ATTGGCAGAG-GCAGATCAAAGATGATAGATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGA
66 ATTGGCAGAGAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGA
* *
98029061 AGACATAGTTGATTTGGCTTCCATGTGTTTACGTTGAAGCAAGTCT
131 AGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCT
* *
98029107 AAGATGATTTGGCATCTCTGTATTGGAAGAGAGCAGATTGAAGATAGCAGATTTGGCATCTTTGT
1 AAGATGATTTGGCATCTCTGTATTGGAAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGT
*
98029172 ATTGGCAGAGAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTCGGCGGAGAGCAAATCGA
66 ATTGGCAGAGAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGA
98029237 AGA
131 AGA
98029240 TAATAGATTT
Statistics
Matches: 289, Mismatches: 18, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
175 167 0.58
176 122 0.42
ACGTcount: A:0.29, C:0.15, G:0.28, T:0.28
Consensus pattern (176 bp):
AAGATGATTTGGCATCTCTGTATTGGAAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGT
ATTGGCAGAGAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTCGGCGGAGAGCAGATCGA
AGACATAGCTGATTTGGCTTCCACGTGTTTACGTTGAAGCAAGTCT
Found at i:98029722 original size:45 final size:44
Alignment explanation
Indices: 98029587--98029741 Score: 195
Period size: 45 Copynumber: 3.5 Consensus size: 44
98029577 TTTACATCGA
* *
98029587 AGCAGATCCAAGATGACAGATTTGGCATCTTTGTATTAGACGGGG
1 AGCAGAT-CAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* *
98029632 AGCAAATCAGAGATAACAG-TTTGACATCTCTGTATTAGACGGGG
1 AGCAGATCA-AGATAACAGATTTGGCATCTCTGTATTAGACGGGG
* * *
98029676 AGCAGATCGAAGATAATAGATTTGGCGTCTCTGTATTATACGGGG
1 AGCAGATC-AAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
*
98029721 AGCAGATCAAAGATAGCAGAT
1 AGCAGATC-AAGATAACAGAT
98029742 ATTGCCTTCC
Statistics
Matches: 95, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
44 40 0.42
45 55 0.58
ACGTcount: A:0.33, C:0.15, G:0.27, T:0.25
Consensus pattern (44 bp):
AGCAGATCAAGATAACAGATTTGGCATCTCTGTATTAGACGGGG
Found at i:98029769 original size:89 final size:88
Alignment explanation
Indices: 98029503--98029776 Score: 221
Period size: 89 Copynumber: 3.0 Consensus size: 88
98029493 AGAACAAGTT
* ** * * * *
98029503 GAAGATAGTAGATTTGGCATCTCCATATTCGACGAGGAGCAGATTAAAGACATAGCAGATCTGAC
1 GAAGATAATAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAG--ATAGCAGATTTG-C
* *
98029568 CTTCATGTGTTTAC-ATCGAAGCAGATC
63 CTTCCTGAG-TTACAAT-GAAGCAGATC
* * * * * * * * *
98029595 CAAGATGACAGATTTGGCATCTTTGTATTAGACGGGGAGCAAATCAGAGATAACAG-TTTGACAT
1 GAAGATAATAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGATTTGCCTT
* ** *
98029659 CTCTGTA-TTAGACGGGGAGCAGATC
66 C-CTG-AGTTACA-ATGAAGCAGATC
* *
98029684 GAAGATAATAGATTTGGCGTCTCTGTATTATACGGGGAGCAGATCAAAGATAGCAGATATTGCCT
1 GAAGATAATAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGAT-TTGCCT
*
98029749 TCCTGAGTTACAATGAAGCAGATT
65 TCCTGAGTTACAATGAAGCAGATC
98029773 GAAG
1 GAAG
98029777 CCGTCAAGAG
Statistics
Matches: 137, Mismatches: 38, Indels: 17
0.71 0.20 0.09
Matches are distributed among these distances:
88 6 0.04
89 74 0.54
90 14 0.10
91 6 0.04
92 37 0.27
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.26
Consensus pattern (88 bp):
GAAGATAATAGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCAGATTTGCCTT
CCTGAGTTACAATGAAGCAGATC
Found at i:98030118 original size:19 final size:19
Alignment explanation
Indices: 98030094--98030173 Score: 110
Period size: 19 Copynumber: 4.3 Consensus size: 19
98030084 AATCTTTAAG
98030094 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
98030113 GATATGCAATCTTAGATGT
1 GATATGCAATCTTAGATAT
* *
98030132 GAAATGCAATCTTTGATAT
1 GATATGCAATCTTAGATAT
*
98030151 GATA--CAATTTTAGATAT
1 GATATGCAATCTTAGATAT
98030168 GATATG
1 GATATG
98030174 ATATGATATG
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
17 15 0.29
19 37 0.71
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:98036043 original size:15 final size:15
Alignment explanation
Indices: 98036023--98036056 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
98036013 GATTTTTTAC
98036023 ATTTTTAGTATACTT
1 ATTTTTAGTATACTT
*
98036038 ATTTTTAGTATGCTT
1 ATTTTTAGTATACTT
98036053 ATTT
1 ATTT
98036057 CATGGGCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.24, C:0.06, G:0.09, T:0.62
Consensus pattern (15 bp):
ATTTTTAGTATACTT
Found at i:98039954 original size:54 final size:54
Alignment explanation
Indices: 98039887--98040023 Score: 265
Period size: 54 Copynumber: 2.5 Consensus size: 54
98039877 ATTGTCGTTG
*
98039887 CAGGGGATTTAGCCTGGACTGATAATCCCGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
98039941 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
98039995 CAGGGGATTTAGCCTGGACTGGTAATCCC
1 CAGGGGATTTAGCCTGGACTGGTAATCCC
98040024 ACTATAAGGA
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
54 82 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (54 bp):
CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
Found at i:98040125 original size:46 final size:46
Alignment explanation
Indices: 98040062--98040335 Score: 334
Period size: 46 Copynumber: 6.0 Consensus size: 46
98040052 ACTCTTTGAT
** * *
98040062 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** * * *
98040108 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTAAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* *
98040154 ATAAAATGAATAAGAGCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
** ** * *
98040200 GGGAAATGAATAAGACCATGGTTGAAAGATACCATGATAGCGTGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
98040246 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * * *
98040292 A-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATG
98040336 TCCAAGATAA
Statistics
Matches: 199, Mismatches: 28, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
45 1 0.01
46 198 0.99
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:98040316 original size:138 final size:138
Alignment explanation
Indices: 98040072--98040335 Score: 375
Period size: 138 Copynumber: 1.9 Consensus size: 138
98040062 ATGAAATGTG
* * **
98040072 TAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGACAACCTGACATGAAATGAATAAGACCATGGTTGAAAGA
* * * * * *
98040137 TACCATGGCAACGTAATATAAAATGAATAAGAGCATGGTTGAAAGATACCATGGCAACATGACGG
66 TACCATGGCAACATAACAGAAAATGAATAAGACCATAGTTGAAAGACACCATGGCAACATGACGG
98040202 GAAATGAA
131 GAAATGAA
* * *
98040210 TAAGACCATGGTTGAAAGATACCATGATAGCGTGACATGAAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGACAACCTGACATGAAATGAATAAGACCATGGTTGAAAGA
* * * *
98040275 TACCATGGCAACATGACAGAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
66 TACCATGGCAACATAACAGAAAATGAATAAGACCATAGTTGAAAGACACCATGGCAACATG
98040336 TCCAAGATAA
Statistics
Matches: 109, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
138 109 1.00
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.21
Consensus pattern (138 bp):
TAAGACCATGGTTGAAAGATACCATGACAACCTGACATGAAATGAATAAGACCATGGTTGAAAGA
TACCATGGCAACATAACAGAAAATGAATAAGACCATAGTTGAAAGACACCATGGCAACATGACGG
GAAATGAA
Found at i:98040647 original size:16 final size:17
Alignment explanation
Indices: 98040626--98040658 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
98040616 ATGATGGAGC
98040626 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
98040642 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
98040659 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:98042241 original size:91 final size:91
Alignment explanation
Indices: 98042085--98042394 Score: 265
Period size: 91 Copynumber: 3.4 Consensus size: 91
98042075 TATGTGAGAA
* * * * * * **
98042085 CCAGTATAAGACCATGTTTGAGACATGGCATCGGCATTAAGACGAGGGCTACTGTAAGATGTGTC
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGC--TAAGATGAGTGCTAGTGTAAGACATGTC
*
98042150 TGGGATATGCATCAGCCTC-GATGAT-G
64 TGGGACATGCATCAGCCTCAGATGATAG
* *
98042176 CCAGTGTAAGACCACGTCTGGGACATGGCATCGGCGTAGAGATGAGTGCCAGTGTAAGACATGTC
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TA-AGATGAGTGCTAGTGTAAGACATGTC
* *
98042241 TAGGACATACATCAGCCTCGATGATGATAG
64 TGGGACATGCATCAGCCTC-A-GATGATAG
** * * *
98042271 CCAGTGTAAGA-TGTGTCTGGGACA-CGCATCGGCTAAGTTTCA-TGCTAGTGTAAGACATGTCT
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAAG-ATGAGTGCTAGTGTAAGACATGTCT
* * *
98042333 GGGACATGCATTAGCACGT-AGACACGAGAG
65 GGGACATGCATCAGC-C-TCAG--ATGATAG
*
98042363 CTAGTGTAAGACCATG-CTTGGGACATGGCATC
1 CCAGTGTAAGACCATGTC-TGGGACATGGCATC
98042395 AGCCTCAATG
Statistics
Matches: 176, Mismatches: 30, Indels: 23
0.77 0.13 0.10
Matches are distributed among these distances:
90 3 0.02
91 101 0.57
92 21 0.12
93 18 0.10
94 21 0.12
95 12 0.07
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (91 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTAAGATGAGTGCTAGTGTAAGACATGTCTG
GGACATGCATCAGCCTCAGATGATAG
Found at i:98042288 original size:47 final size:45
Alignment explanation
Indices: 98042137--98042343 Score: 179
Period size: 47 Copynumber: 4.6 Consensus size: 45
98042127 CGAGGGCTAC
** *
98042137 TGTAAGATGTGTCTGGGATATGCATCAGCCTC--GATGATGCCAG
1 TGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGATGCCAG
* * * *
98042180 TGTAAGACCACGTCTGGGACATGGCATCGGCGTAGAGATGAGTGCCAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCAGCCTCGAGATGA-TGCCAG
* *
98042228 TGTAAGACATGTCTAGGACATACATCAGCCTCGATGATGATAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCAGCCTCGA-GATGAT-GCCAG
** * * * * * *
98042275 TGTAAGATGTGTCTGGGACACGCATC-GGCT-AAGTTTCATGCTAG
1 TGTAAGACATGTCTGGGACATGCATCAGCCTCGAG-ATGATGCCAG
98042319 TGTAAGACATGTCTGGGACATGCAT
1 TGTAAGACATGTCTGGGACATGCAT
98042344 TAGCACGTAG
Statistics
Matches: 130, Mismatches: 26, Indels: 15
0.76 0.15 0.09
Matches are distributed among these distances:
43 7 0.05
44 37 0.28
45 12 0.09
46 13 0.10
47 48 0.37
48 13 0.10
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.25
Consensus pattern (45 bp):
TGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATGATGCCAG
Found at i:98043310 original size:55 final size:55
Alignment explanation
Indices: 98043201--98043313 Score: 138
Period size: 55 Copynumber: 2.1 Consensus size: 55
98043191 CTTTCAAATT
* * * **
98043201 AGTATTGTCCACGGTTAGGCCATACGGGCGTGTGCCATAGCCATCTTTATAAGTC
1 AGTATTGCCCACGGGTAGGCCACACGGGCGTGTGCCATAGCCATCCCTATAAGTC
* * *
98043256 AGTATTGCCCACGGGTAGGCCACACGGGCGTGTGTCATGGCCGTGCCCTA-AAGTC
1 AGTATTGCCCACGGGTAGGCCACACGGGCGTGTGCCATAGCCAT-CCCTATAAGTC
98043311 AGT
1 AGT
98043314 GTTTCACACG
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
55 46 0.94
56 3 0.06
ACGTcount: A:0.20, C:0.26, G:0.29, T:0.25
Consensus pattern (55 bp):
AGTATTGCCCACGGGTAGGCCACACGGGCGTGTGCCATAGCCATCCCTATAAGTC
Found at i:98043324 original size:55 final size:55
Alignment explanation
Indices: 98043201--98043326 Score: 130
Period size: 55 Copynumber: 2.3 Consensus size: 55
98043191 CTTTCAAATT
* * **
98043201 AGTATTGTC-CACGGTTAGGCCATACGGGCGTGTGCCATAGCCATCTTTATAAGTC
1 AGTATTG-CACACGGGTAGGCCACACGGGCGTGTGCCATAGCCATCCCTATAAGTC
* * * *
98043256 AGTATTGCCCACGGGTAGGCCACACGGGCGTGTGTCATGGCCGTGCCCTA-AAGTC
1 AGTATTGCACACGGGTAGGCCACACGGGCGTGTGCCATAGCCAT-CCCTATAAGTC
* *
98043311 AGTGTTTCACACGGGT
1 AGTATTGCACACGGGT
98043327 TGAAGAAGTG
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
54 1 0.02
55 55 0.93
56 3 0.05
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.25
Consensus pattern (55 bp):
AGTATTGCACACGGGTAGGCCACACGGGCGTGTGCCATAGCCATCCCTATAAGTC
Found at i:98045206 original size:19 final size:19
Alignment explanation
Indices: 98045182--98045279 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
98045172 AATCTTTAAG
98045182 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
98045201 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
98045220 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
98045237 GATCTGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
98045256 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
98045277 GAT
1 GAT
98045280 CTTGTAATCT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
21 9 0.12
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:98045212 original size:36 final size:35
Alignment explanation
Indices: 98045172--98045279 Score: 103
Period size: 36 Copynumber: 2.9 Consensus size: 35
98045162 ATGGAAATAT
98045172 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATGC
*
98045208 AATC-TT-AGATATGATACAATCTTAGATATGATCTGC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATGC
*
98045244 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT---TAAGATATGCAATCTT--AGATATGAT
98045280 CTTGTAATCT
Statistics
Matches: 60, Mismatches: 2, Indels: 16
0.77 0.03 0.21
Matches are distributed among these distances:
33 6 0.10
34 1 0.02
35 2 0.03
36 27 0.45
37 1 0.02
38 7 0.12
40 10 0.17
41 6 0.10
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATGC
Found at i:98045291 original size:22 final size:20
Alignment explanation
Indices: 98045186--98045296 Score: 117
Period size: 19 Copynumber: 5.7 Consensus size: 20
98045176 TTTAAGGATA
*
98045186 TGCAATCTT-AGATATGATA
1 TGCAATCTTGAGATATGATC
98045205 TGCAATCTT-AGATATGA--
1 TGCAATCTTGAGATATGATC
*
98045222 TACAATCTT-AGATATGATC
1 TGCAATCTTGAGATATGATC
*
98045241 TGCAATCTT-AGATATGATA
1 TGCAATCTTGAGATATGATC
98045260 TGCAATCTTGAAGATATGATC
1 TGCAATCTTG-AGATATGATC
*
98045281 TTGTAATCTTGGAGAT
1 -TGCAATCTT-GAGAT
98045297 TTAATTTGTA
Statistics
Matches: 81, Mismatches: 5, Indels: 9
0.85 0.05 0.09
Matches are distributed among these distances:
17 16 0.20
19 43 0.53
21 9 0.11
22 12 0.15
23 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (20 bp):
TGCAATCTTGAGATATGATC
Found at i:98050453 original size:60 final size:60
Alignment explanation
Indices: 98050359--98050479 Score: 224
Period size: 60 Copynumber: 2.0 Consensus size: 60
98050349 TGGTGGGATG
*
98050359 TATGCTCCGAGAGTAATCTCTGTACCTCAACTTTCTAGGTTGAAGGATAAAGTCAGCAAC
1 TATGCTCCGAGAGTAATCTCTGTACCTCAACTTTCCAGGTTGAAGGATAAAGTCAGCAAC
*
98050419 TATGCTCCGAGAGTAATCTCTGTACCTCAGCTTTCCAGGTTGAAGGATAAAGTCAGCAAC
1 TATGCTCCGAGAGTAATCTCTGTACCTCAACTTTCCAGGTTGAAGGATAAAGTCAGCAAC
98050479 T
1 T
98050480 TCATTCTTGT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (60 bp):
TATGCTCCGAGAGTAATCTCTGTACCTCAACTTTCCAGGTTGAAGGATAAAGTCAGCAAC
Found at i:98050990 original size:19 final size:18
Alignment explanation
Indices: 98050959--98051013 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 18
98050949 CTTTTATTTC
98050959 AAAAAAAAGGGAAAAAAAG
1 AAAAAAAA-GGAAAAAAAG
98050978 AAAAGAAAAGGAAAAAATA-
1 AAAA-AAAAGGAAAAAA-AG
98050997 AAATAAAAA-GAAAAAAA
1 AAA-AAAAAGGAAAAAAA
98051014 AATGGAGAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
17 1 0.03
18 7 0.21
19 19 0.58
20 6 0.18
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.04
Consensus pattern (18 bp):
AAAAAAAAGGAAAAAAAG
Found at i:98050992 original size:18 final size:18
Alignment explanation
Indices: 98050971--98051012 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
98050961 AAAAAAGGGA
*
98050971 AAAAAAGAAAAGAAAAGG
1 AAAAAAGAAAAGAAAAAG
* *
98050989 AAAAAATAAAATAAAAAG
1 AAAAAAGAAAAGAAAAAG
98051007 AAAAAA
1 AAAAAA
98051013 AAATGGAGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.83, C:0.00, G:0.12, T:0.05
Consensus pattern (18 bp):
AAAAAAGAAAAGAAAAAG
Found at i:98052020 original size:43 final size:42
Alignment explanation
Indices: 98051972--98052111 Score: 128
Period size: 43 Copynumber: 3.3 Consensus size: 42
98051962 CGCCTTAATC
98051972 CCCTAAGCAGTAGGGTAACAGGTTAAATTTGAAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTG-AGATCTTATCT
* * * * *
98052015 CCCTAAGCAGTAGTGG-AGCAGATCGAAGACTT--G-CCTTAATC-
1 CCCTAAGCAGTAG-GGTAACAGGT-TAA-ATTTGAGATCTT-ATCT
* *
98052056 CCCTAAGTAGTAGGGTAATAGGTTAAATTTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGTAACAGGTTAAATTTG-AGATCTTATCT
98052099 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
98052112 TGGAGCAGAT
Statistics
Matches: 74, Mismatches: 13, Indels: 20
0.69 0.12 0.19
Matches are distributed among these distances:
39 3 0.04
40 4 0.05
41 19 0.26
42 8 0.11
43 33 0.45
44 4 0.05
45 3 0.04
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (42 bp):
CCCTAAGCAGTAGGGTAACAGGTTAAATTTGAGATCTTATCT
Found at i:98052104 original size:84 final size:84
Alignment explanation
Indices: 98051962--98052581 Score: 922
Period size: 84 Copynumber: 7.4 Consensus size: 84
98051952 CAAAATTCAG
*
98051962 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGAAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
98052027 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* * *
98052046 TGCCTTAATCCCCTAAGTAGTAGGGTAATAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
98052111 GTGGAGCAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
* * * * *
98052130 CGCCTTAATCCCCTGAGCGGCAGGGTAACAGG-----TTCGCAGATATTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
98052190 GCGGAGCAGATCGATGACGACT
66 GTGGAGCAGATCGA--A-GACT
98052212 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* *
98052277 GTAGAGCAGATCGAAGACC
66 GTGGAGCAGATCGAAGACT
*
98052296 CGTCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
98052361 GTGGAGTAGATCGAAGACT
66 GTGGAGCAGATCGAAGACT
98052380 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGG-----TTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
98052440 GCGGAGCAGATCGACGACGACT
66 GTGGAGCAGATCGA--A-GACT
98052462 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGC-GTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
*
98052526 GTAGAGCAGATCGAAGA-T
66 GTGGAGCAGATCGAAGACT
* * *
98052544 GTGCCTTAACCCCCTAAGCAGTAGGGTAATAGGTTAAA
1 -CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA
98052582 GTATAACAGA
Statistics
Matches: 486, Mismatches: 33, Indels: 35
0.88 0.06 0.06
Matches are distributed among these distances:
79 79 0.16
81 2 0.00
82 70 0.14
83 36 0.07
84 221 0.45
85 1 0.00
86 15 0.03
87 62 0.13
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (84 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
GTGGAGCAGATCGAAGACT
Found at i:98052247 original size:166 final size:164
Alignment explanation
Indices: 98051962--98052581 Score: 842
Period size: 166 Copynumber: 3.7 Consensus size: 164
98051952 CAAAATTCAG
*
98051962 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGAAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGG----ATTTGCAGATCTTATCTCCCTAAGCAGTA
* * *
98052027 GTGGAGCAGATCGAAGACTTGCCTTAATCCCCTAAGTAGTAGGGTAATAGGTTAAATTTGCAGAT
62 GTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGAT
98052092 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
127 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
* * * * * *
98052130 CGCCTTAATCCCCTGAGCGGCAGGGTAACAGG-TTCGCAGATATTATCTCCCTAAGCAGTAGCGG
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGATTTGCAGATCTTATCTCCCTAAGCAGTAGTGG
98052194 AGCAGATCGATGACGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATC
66 AGCAGATCGA--A-GACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATC
* *
98052259 TTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACC
128 TTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
*
98052296 CGTCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGG----ATTTGCAGATCTTATCTCCCTAAGCAGTA
*
98052361 GTGGAGTAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGG-----TTTGCAGAT
62 GTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGAT
*
98052421 CTTATCTCCCTAAGCAGTAGCGGAGCAGATCGACGACGACT
127 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGA--A-GACT
98052462 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGC-GTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGG----ATTTGCAGATCTTATCTCCCTAAGCAGTA
* * * *
98052526 GTAGAGCAGATCGAAGA-TGTGCCTTAACCCCCTAAGCAGTAGGGTAATAGGTTAAA
62 GTGGAGCAGATCGAAGACT-CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAA
98052582 GTATAACAGA
Statistics
Matches: 406, Mismatches: 29, Indels: 32
0.87 0.06 0.07
Matches are distributed among these distances:
163 78 0.19
164 1 0.00
165 49 0.12
166 174 0.43
168 65 0.16
169 1 0.00
171 38 0.09
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (164 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGATTTGCAGATCTTATCTCCCTAAGCAGTAGTGG
AGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTA
TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACT
Found at i:98052313 original size:41 final size:41
Alignment explanation
Indices: 98052257--98052402 Score: 111
Period size: 41 Copynumber: 3.5 Consensus size: 41
98052247 AATTTGCAGA
98052257 TCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACCCG
1 TCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACCCG
* ** *** *
98052298 TCTTAATC-CCCTAAGCAGTAGGGTA-A-CAGGTTAAATTTGCAG
1 TCTT-ATCTCCCTAAGCAGTA--GTAGAGCAGATCGAA-GACCCG
* * *
98052340 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACTCG
1 -TCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACCCG
*
98052382 CCTTAATC-CCCTAAGCAGTAG
1 TCTT-ATCTCCCTAAGCAGTAG
98052403 GGTAACAGGT
Statistics
Matches: 78, Mismatches: 18, Indels: 18
0.68 0.16 0.16
Matches are distributed among these distances:
41 40 0.51
42 14 0.18
43 24 0.31
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.25
Consensus pattern (41 bp):
TCTTATCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACCCG
Found at i:98052407 original size:250 final size:250
Alignment explanation
Indices: 98051962--98052581 Score: 1080
Period size: 250 Copynumber: 2.5 Consensus size: 250
98051952 CAAAATTCAG
*
98051962 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGAAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* * *
98052027 GTGGAGCAGATCGAAGACTTGCCTTAATCCCCTAAGTAGTAGGGTAATAGGTTAAATTTGCAGAT
66 GTAGAGCAGATCGAAGACCTGCCTTAATCCCCTAAGCAGTAGGGTAATAGGTTAAATTTGCAGAT
* *
98052092 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTGAGCGGCAGGGTA
131 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGCAGGGTA
*
98052157 ACAGGTTCGCAGATATTATCTCCCTAAGCAGTAGCGGAGCAGATCGATGACGACT
196 ACAGGTTCGCAGATATTATCTCCCTAAGCAGTAGCGGAGCAGATCGACGACGACT
98052212 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
* * *
98052277 GTAGAGCAGATCGAAGACCCGTCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGAT
66 GTAGAGCAGATCGAAGACCTGCCTTAATCCCCTAAGCAGTAGGGTAATAGGTTAAATTTGCAGAT
* *
98052342 CTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACTCGCCTTAATCCCCTAAGCAGTAGGGTA
131 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGCAGGGTA
* *
98052407 ACAGGTTTGCAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATCGACGACGACT
196 ACAGGTTCGCAGATATTATCTCCCTAAGCAGTAGCGGAGCAGATCGACGACGACT
98052462 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGC-GTA
1 CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
** *
98052526 GTAGAGCAGATCGAAGATGTGCCTTAACCCCCTAAGCAGTAGGGTAATAGGTTAAA
66 GTAGAGCAGATCGAAGACCTGCCTTAATCCCCTAAGCAGTAGGGTAATAGGTTAAA
98052582 GTATAACAGA
Statistics
Matches: 350, Mismatches: 20, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
249 53 0.15
250 297 0.85
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (250 bp):
CGCCTTAATCCCCTAAGCAGTAGGGTAACAGGTTAAATTTGCAGATCTTATCTCCCTAAGCAGTA
GTAGAGCAGATCGAAGACCTGCCTTAATCCCCTAAGCAGTAGGGTAATAGGTTAAATTTGCAGAT
CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTCGCCTTAATCCCCTAAGCAGCAGGGTA
ACAGGTTCGCAGATATTATCTCCCTAAGCAGTAGCGGAGCAGATCGACGACGACT
Found at i:98052862 original size:87 final size:89
Alignment explanation
Indices: 98052703--98052904 Score: 338
Period size: 87 Copynumber: 2.3 Consensus size: 89
98052693 CGACGGAGAG
* * *
98052703 TAGATCTAAGACATAGCAGATCTGACCTTCGGATATTTTCACATTGAAGCAGATCCAAGATGATT
1 TAGATCAAAGACATAGCAGATCTGACCTTCGGATAGTTTCACACTGAAGCAGATCCAAGATGATT
98052768 TGGCATCCCTATGTTTACAGGGAA
66 TGGCATCCCTATGTTTACAGGGAA
98052792 TAGATCAAAGACATAGCAGATCTGACCTTCAGG-T-GTTT-ACACTGAAGCAGATCCAAGATGAT
1 TAGATCAAAGACATAGCAGATCTGACCTTC-GGATAGTTTCACACTGAAGCAGATCCAAGATGAT
*
98052854 TTGGCATCCCTGTGTTTACAGGGAA
65 TTGGCATCCCTATGTTTACAGGGAA
98052879 TAGATCAAAGACATAGCAGATCTGAC
1 TAGATCAAAGACATAGCAGATCTGAC
98052905 ATTCCTGTGC
Statistics
Matches: 108, Mismatches: 4, Indels: 4
0.93 0.03 0.03
Matches are distributed among these distances:
87 73 0.68
88 3 0.03
89 30 0.28
90 2 0.02
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (89 bp):
TAGATCAAAGACATAGCAGATCTGACCTTCGGATAGTTTCACACTGAAGCAGATCCAAGATGATT
TGGCATCCCTATGTTTACAGGGAA
Found at i:98052926 original size:87 final size:87
Alignment explanation
Indices: 98052703--98052937 Score: 303
Period size: 87 Copynumber: 2.7 Consensus size: 87
98052693 CGACGGAGAG
* * *** *
98052703 TAGATCTAAGACATAGCAGATCTGACCTTC-GGATATTTTCACATTGAAGCAGATCCAAGATGAT
1 TAGATCAAAGACATAGCAGATCTGACATTCAGG-T-GCAT-ACACTGAAGCAGATCCAAGATGAT
98052767 TTGGCATCCCTATGTTTACAGGGAA
63 TTGGCATCCCTATGTTTACAGGGAA
* **
98052792 TAGATCAAAGACATAGCAGATCTGACCTTCAGGTGTTTACACTGAAGCAGATCCAAGATGATTTG
1 TAGATCAAAGACATAGCAGATCTGACATTCAGGTGCATACACTGAAGCAGATCCAAGATGATTTG
*
98052857 GCATCCCTGTGTTTACAGGGAA
66 GCATCCCTATGTTTACAGGGAA
** *
98052879 TAGATCAAAGACATAGCAGATCTGACATTCCTGTGCATACAGC-GAAGCAGATCGAAGAT
1 TAGATCAAAGACATAGCAGATCTGACATTCAGGTGCATACA-CTGAAGCAGATCCAAGAT
98052938 TTCAGCATGG
Statistics
Matches: 134, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
87 98 0.73
88 4 0.03
89 30 0.22
90 2 0.01
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.26
Consensus pattern (87 bp):
TAGATCAAAGACATAGCAGATCTGACATTCAGGTGCATACACTGAAGCAGATCCAAGATGATTTG
GCATCCCTATGTTTACAGGGAA
Found at i:98053510 original size:19 final size:19
Alignment explanation
Indices: 98053486--98053583 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
98053476 AATCTTTAAG
98053486 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
98053505 GATATGCGATCTTAGATAT
1 GATATGCAATCTTAGATAT
98053524 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
98053541 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
98053560 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
98053581 GAT
1 GAT
98053584 CTTGTAATCT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
21 9 0.12
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:98053517 original size:36 final size:35
Alignment explanation
Indices: 98053476--98053583 Score: 103
Period size: 36 Copynumber: 2.9 Consensus size: 35
98053466 ATGGAAATAT
98053476 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATGC
*
98053512 GATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATGC
*
98053548 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT---TAAGATATGCAATCTT--AGATATGAT
98053584 CTTGTAATCT
Statistics
Matches: 59, Mismatches: 3, Indels: 16
0.76 0.04 0.21
Matches are distributed among these distances:
33 6 0.10
34 1 0.02
35 2 0.03
36 26 0.44
37 1 0.02
38 7 0.12
40 10 0.17
41 6 0.10
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.36
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATGC
Found at i:98055114 original size:6 final size:6
Alignment explanation
Indices: 98055103--98055127 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
98055093 ATATTATATA
98055103 TTAAAT TTAAAT TTAAAT TTAAAT T
1 TTAAAT TTAAAT TTAAAT TTAAAT T
98055128 CAAAATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TTAAAT
Found at i:98057136 original size:22 final size:23
Alignment explanation
Indices: 98057110--98057153 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
98057100 ACCTATAATA
98057110 ATGTAGAC-ATGTTGCCAATAAG
1 ATGTAGACGATGTTGCCAATAAG
98057132 ATGTAGACGATGTTGCCAATAA
1 ATGTAGACGATGTTGCCAATAA
98057154 TGTGATCAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 8 0.38
23 13 0.62
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.27
Consensus pattern (23 bp):
ATGTAGACGATGTTGCCAATAAG
Found at i:98057679 original size:18 final size:18
Alignment explanation
Indices: 98057651--98057685 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
98057641 TTTTTAATAC
98057651 ATATTTTAAAT-ATTTTA
1 ATATTTTAAATAATTTTA
98057668 ATATTATTAAATAATTTT
1 ATATT-TTAAATAATTTT
98057686 TTCATCTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 6 0.38
19 5 0.31
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATATTTTAAATAATTTTA
Found at i:98058609 original size:31 final size:31
Alignment explanation
Indices: 98058571--98058638 Score: 102
Period size: 31 Copynumber: 2.2 Consensus size: 31
98058561 TTCACTTTTG
*
98058571 CTTTTTAATAGTTTCTTATTAATTGTTATCT
1 CTTTTTAATAGTTTCTTATTAATTATTATCT
* *
98058602 CTTTTTAATAGTTTTTTATTACTTATTATCT
1 CTTTTTAATAGTTTCTTATTAATTATTATCT
98058633 -TTTTTA
1 CTTTTTA
98058639 TTAAAAGATT
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
30 6 0.18
31 28 0.82
ACGTcount: A:0.22, C:0.09, G:0.04, T:0.65
Consensus pattern (31 bp):
CTTTTTAATAGTTTCTTATTAATTATTATCT
Found at i:98059137 original size:6 final size:6
Alignment explanation
Indices: 98059128--98059155 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
98059118 ATTATATTAT
98059128 AATTTA AATTTA AATTTA AATTTA AATT
1 AATTTA AATTTA AATTTA AATTTA AATT
98059156 CAAAATATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
AATTTA
Found at i:98062769 original size:29 final size:27
Alignment explanation
Indices: 98062716--98062769 Score: 72
Period size: 29 Copynumber: 1.9 Consensus size: 27
98062706 TTATAGATCA
*
98062716 AGAAAATCAAGATTTGGACTGAAATCG
1 AGAAAATCAAGATTTGGACTAAAATCG
*
98062743 AGAAAATACAAGGTTATGGACTAAAAT
1 AGAAAAT-CAAGATT-TGGACTAAAAT
98062770 GGTAAGTTGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 7 0.30
28 6 0.26
29 10 0.43
ACGTcount: A:0.48, C:0.09, G:0.20, T:0.22
Consensus pattern (27 bp):
AGAAAATCAAGATTTGGACTAAAATCG
Found at i:98063100 original size:29 final size:29
Alignment explanation
Indices: 98063033--98063101 Score: 111
Period size: 29 Copynumber: 2.4 Consensus size: 29
98063023 TGTGTGTACC
*
98063033 ATGTGAAAACGGATAGCTTCGGCTATCAA
1 ATGTGAAAAGGGATAGCTTCGGCTATCAA
* *
98063062 ATGTGAAAAGGGATAGCTTTGGCTATCGA
1 ATGTGAAAAGGGATAGCTTCGGCTATCAA
98063091 ATGTGAAAAGG
1 ATGTGAAAAGG
98063102 TTAAGTATAC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.25
Consensus pattern (29 bp):
ATGTGAAAAGGGATAGCTTCGGCTATCAA
Found at i:98063243 original size:32 final size:32
Alignment explanation
Indices: 98063094--98063251 Score: 217
Period size: 32 Copynumber: 4.9 Consensus size: 32
98063084 CTATCGAATG
* * * *
98063094 TGAAAAGGTTAAGTATACTTTGTGTATACCACA
1 TGAAAAGGTTATGTACACTTTGTGTGTA-CACT
*
98063127 TGAAAAGGTTATGCACACTTTGTGTGTACACT
1 TGAAAAGGTTATGTACACTTTGTGTGTACACT
*
98063159 TGAAAAGGTTATGCACACTTTGTGTGTACACT
1 TGAAAAGGTTATGTACACTTTGTGTGTACACT
98063191 TGAAAAGGTTATGTACACTTTGTGTGTACACT
1 TGAAAAGGTTATGTACACTTTGTGTGTACACT
** * *
98063223 TGAAAAGGAAAGGTATACTTTGTGTGTAC
1 TGAAAAGGTTATGTACACTTTGTGTGTAC
98063252 CACTCAGAAA
Statistics
Matches: 115, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
32 91 0.79
33 24 0.21
ACGTcount: A:0.31, C:0.13, G:0.22, T:0.34
Consensus pattern (32 bp):
TGAAAAGGTTATGTACACTTTGTGTGTACACT
Found at i:98063271 original size:64 final size:64
Alignment explanation
Indices: 98063141--98063301 Score: 155
Period size: 64 Copynumber: 2.5 Consensus size: 64
98063131 AAGGTTATGC
** * * * ** *
98063141 ACACTTTGTGTGTACACTTGAAAAGGTTATGCACACTTTGTGTGTACACTTGAAAAGGTTATGT
1 ACACTTTGTGTGTACACTTGAAAAGGAAAGGTACACTTTGTGTGTACACTAGAAAAGGAAACGT
*
98063205 ACACTTTGTGTGTACACTTGAAAAGGAAAGGTATACTTTGTGTGTACCACTCAG-AAA-GAAACG
1 ACACTTTGTGTGTACACTTGAAAAGGAAAGGTACACTTTGTGTGTA-CACT-AGAAAAGGAAACG
98063268 T
64 T
* * * * *
98063269 ACACCTCGAGTGTACAATTGGAAAAGAAAAGGT
1 ACACTTTGTGTGTACACTT-GAAAAGGAAAGGT
98063302 CCATCAGAAA
Statistics
Matches: 80, Mismatches: 14, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
64 60 0.75
65 19 0.24
66 1 0.01
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (64 bp):
ACACTTTGTGTGTACACTTGAAAAGGAAAGGTACACTTTGTGTGTACACTAGAAAAGGAAACGT
Found at i:98066718 original size:19 final size:19
Alignment explanation
Indices: 98066694--98066805 Score: 138
Period size: 19 Copynumber: 5.8 Consensus size: 19
98066684 AATCTTTAAG
* *
98066694 GATATGAAATCTTAGGTAT
1 GATATGCAATCTTAGATAT
98066713 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
98066732 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
98066749 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
98066768 GATATGCAATTTTGAAGATAT
1 GATATGCAATCTT--AGATAT
* *
98066789 GATCTTGTAATCTTAGA
1 GAT-ATGCAATCTTAGA
98066806 GATTTAATTT
Statistics
Matches: 82, Mismatches: 6, Indels: 9
0.85 0.06 0.09
Matches are distributed among these distances:
17 17 0.21
19 46 0.56
20 3 0.04
21 9 0.11
22 7 0.09
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:98066724 original size:36 final size:36
Alignment explanation
Indices: 98066684--98066769 Score: 108
Period size: 36 Copynumber: 2.4 Consensus size: 36
98066674 ATGAAAATAT
*
98066684 AATCTTTAAGGATATG-A-AATCTTAGGTATGATATGC
1 AATCTTT-A-GATATGAACAATCTTAGATATGATATGC
98066720 AATC-TTAGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAGATATGA-ACAATCTTAGATATGATATGC
98066756 AATC-TTAGATATGA
1 AATCTTTAGATATGA
98066770 TATGCAATTT
Statistics
Matches: 46, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
33 6 0.13
34 1 0.02
35 3 0.07
36 36 0.78
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.36
Consensus pattern (36 bp):
AATCTTTAGATATGAACAATCTTAGATATGATATGC
Found at i:98066730 original size:14 final size:15
Alignment explanation
Indices: 98066713--98066769 Score: 53
Period size: 17 Copynumber: 3.5 Consensus size: 15
98066703 TCTTAGGTAT
98066713 GATATG-CAATCTTA
1 GATATGACAATCTTA
98066727 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
98066744 GATATGATATGCAATCTTA
1 GATATG--A--CAATCTTA
98066763 GATATGA
1 GATATGA
98066770 TATGCAATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.16
17 18 0.47
19 14 0.37
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:98066770 original size:36 final size:36
Alignment explanation
Indices: 98066701--98066771 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
98066691 AAGGATATGA
*
98066701 AATCTTAGGTATGATATGCAATCTTAGATATGATAC
1 AATCTTAGATATGATATGCAATCTTAGATATGATAC
98066737 AATCTTAGATATGATATGCAATCTTAGATATGATA
1 AATCTTAGATATGATATGCAATCTTAGATATGATA
98066772 TGCAATTTTG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (36 bp):
AATCTTAGATATGATATGCAATCTTAGATATGATAC
Found at i:98073386 original size:118 final size:119
Alignment explanation
Indices: 98073175--98073397 Score: 367
Period size: 118 Copynumber: 1.9 Consensus size: 119
98073165 CAAGATTTGG
* *
98073175 CATCCCTGTGTTTATAGGGAAACAGATCGAAGATAGCAGATCTGACACTCCTGTGCTTACAGCGA
1 CATCCCTGTGTTTATAGGGAAACAGATCGAAGATAGAAGATCTGACACTCCTATGCTTACAGCGA
* * *
98073240 AGCAGATCAAAGATTTCAGCATGGCATCCCTGTGTTTATACAAGTTGAAGATAA
66 AACAGATCAAAGATTTCAACATGACATCCCTGTGTTTATACAAGTTGAAGATAA
* *
98073294 CATCCCTGTGTTTATAGGG-AACAGATCGAAGATAGAAGATCTGACATTCCTATGCTTACAGTGA
1 CATCCCTGTGTTTATAGGGAAACAGATCGAAGATAGAAGATCTGACACTCCTATGCTTACAGCGA
*
98073358 AACAGATCAAAGATTTTAACATGACATCCCTGTGTTTATA
66 AACAGATCAAAGATTTCAACATGACATCCCTGTGTTTATA
98073398 GGGAACAAGT
Statistics
Matches: 96, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
118 77 0.80
119 19 0.20
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (119 bp):
CATCCCTGTGTTTATAGGGAAACAGATCGAAGATAGAAGATCTGACACTCCTATGCTTACAGCGA
AACAGATCAAAGATTTCAACATGACATCCCTGTGTTTATACAAGTTGAAGATAA
Found at i:98073432 original size:44 final size:45
Alignment explanation
Indices: 98073382--98073467 Score: 129
Period size: 44 Copynumber: 1.9 Consensus size: 45
98073372 TTTAACATGA
* * *
98073382 CATCCCTGTGTTTATAGGGAACAAGTTGAAG-ATAGCAGATTTGG
1 CATCCCTGTGTTTACAGGGAACAAATCGAAGAATAGCAGATTTGG
98073426 CATCCCTGTGTTTACAGGGAACAAATCGAAGACATAGCAGAT
1 CATCCCTGTGTTTACAGGGAACAAATCGAAGA-ATAGCAGAT
98073468 CTGATTTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 28 0.76
46 9 0.24
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (45 bp):
CATCCCTGTGTTTACAGGGAACAAATCGAAGAATAGCAGATTTGG
Found at i:98073710 original size:175 final size:175
Alignment explanation
Indices: 98073419--98074001 Score: 952
Period size: 175 Copynumber: 3.3 Consensus size: 175
98073409 GAAGATAGCA
* * * * *
98073419 GATTTGGCATCCCTGTGTTTACAGGGAACAAATCGAAGACATAGCAGATCTGATTTTTAGATGTT
1 GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATGTT
*
98073484 CTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGAAGGTACAT
66 CTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACAT
98073549 AGCAGGTCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGAT
131 AGCAGGTCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGAT
*
98073594 GATTTGGCATTCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATGTT
1 GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATGTT
*
98073659 CTCACACCAAATCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACAT
66 CTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACAT
*
98073724 AGCAGGTCTAACCTTCAGATGTTTATACTAAAGCAGATCCAAGAT
131 AGCAGGTCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGAT
* * *
98073769 GATTTGGGCATTCTTGTGTTTACAAGGAACAAATTGAAGACATAGCAGATTTGACTTTCGGATGT
1 GATTT-GGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATGT
* * *
98073834 TCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGATGAAGAGCAGATACA
65 TCTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACA
*
98073899 TAGCAGATCTAACCTTCAGATGATTT-TACTGAAGCAGATCCAAGAT
130 TAGCAGGTCTAACCTTCAGATG-TTTATACTGAAGCAGATCCAAGAT
* * * * *
98073945 GATTTGGCATCCTTGTGTTCACAAGGAGCAAACCGAAGACACAGCAGATTTGGCTTT
1 GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTT
98074002 CACGTGTTTA
Statistics
Matches: 382, Mismatches: 24, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
175 216 0.57
176 163 0.43
177 3 0.01
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (175 bp):
GATTTGGCATCCTTGTGTTTACAAGGAACAAATCGAAGACATAGCAGATTTGACTTTTGGATGTT
CTCACACCAAAGCAGATCCAAGATAACAGATCTGGCATCTCCATTTCGACGGAGAGCAGGTACAT
AGCAGGTCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGAT
Found at i:98074470 original size:19 final size:19
Alignment explanation
Indices: 98074446--98074524 Score: 126
Period size: 19 Copynumber: 4.2 Consensus size: 19
98074436 AATCTTTAAG
98074446 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
98074465 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
98074484 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
98074501 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
98074522 GAT
1 GAT
98074525 CTTGTAATCT
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
17 17 0.30
19 30 0.54
21 9 0.16
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:98074477 original size:36 final size:36
Alignment explanation
Indices: 98074436--98074523 Score: 119
Period size: 36 Copynumber: 2.4 Consensus size: 36
98074426 ATGAAAATAT
98074436 AATCTTTAAGGATATG-CAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGACAATCTTAGATATGATATGC
98074472 AATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG--ACAATCTTAGATATGATATGC
*
98074508 AATCTTGAAGATATGA
1 AATCTTTAAGATATGA
98074524 TCTTGTAATC
Statistics
Matches: 46, Mismatches: 1, Indels: 10
0.81 0.02 0.18
Matches are distributed among these distances:
33 6 0.13
34 1 0.02
35 2 0.04
36 29 0.63
37 1 0.02
38 7 0.15
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.35
Consensus pattern (36 bp):
AATCTTTAAGATATGACAATCTTAGATATGATATGC
Found at i:98076174 original size:6 final size:6
Alignment explanation
Indices: 98076163--98076187 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
98076153 ATATTATATA
98076163 TTAAAT TTAAAT TTAAAT TTAAAT T
1 TTAAAT TTAAAT TTAAAT TTAAAT T
98076188 AAAAATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TTAAAT
Found at i:98080199 original size:6 final size:6
Alignment explanation
Indices: 98080190--98080223 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
98080180 ATTATATTAT
* *
98080190 AATTTA AATTTT AATTTT AATTTA AATTTA AATT
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATT
98080224 CAAAATATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (6 bp):
AATTTA
Found at i:98080212 original size:18 final size:18
Alignment explanation
Indices: 98080189--98080223 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
98080179 TATTATATTA
*
98080189 TAATTTAAATTTTAATTT
1 TAATTTAAATTTAAATTT
98080207 TAATTTAAATTTAAATT
1 TAATTTAAATTTAAATT
98080224 CAAAATATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TAATTTAAATTTAAATTT
Found at i:98082006 original size:35 final size:35
Alignment explanation
Indices: 98081960--98082032 Score: 146
Period size: 35 Copynumber: 2.1 Consensus size: 35
98081950 AACATTGAGC
98081960 ACAAAAGCTAATAGATTATCAGTAATTACAATAGT
1 ACAAAAGCTAATAGATTATCAGTAATTACAATAGT
98081995 ACAAAAGCTAATAGATTATCAGTAATTACAATAGT
1 ACAAAAGCTAATAGATTATCAGTAATTACAATAGT
98082030 ACA
1 ACA
98082033 CAAAATTCAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.49, C:0.12, G:0.11, T:0.27
Consensus pattern (35 bp):
ACAAAAGCTAATAGATTATCAGTAATTACAATAGT
Found at i:98082605 original size:26 final size:26
Alignment explanation
Indices: 98082566--98082673 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
98082556 TGATACAAAT
98082566 TGATAAT-GAGTTAGGTAAATGTTCCA
1 TGATAATGGA-TTAGGTAAATGTTCCA
*
98082592 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
98082618 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
98082644 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
98082670 TGAT
1 TGAT
98082674 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
26 75 0.97
27 2 0.03
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:98089574 original size:26 final size:25
Alignment explanation
Indices: 98089531--98089637 Score: 178
Period size: 26 Copynumber: 4.2 Consensus size: 25
98089521 TGATACAAAT
98089531 TGATAATGGTTAGGTAAATGTTCCA
1 TGATAATGGTTAGGTAAATGTTCCA
*
98089556 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGG-TTAGGTAAATGTTCCA
98089582 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAAT-GGTTAGGTAAATGTTCCA
98089608 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGG-TTAGGTAAATGTTCCA
98089634 TGAT
1 TGAT
98089638 GGGAATTTCA
Statistics
Matches: 77, Mismatches: 2, Indels: 5
0.92 0.02 0.06
Matches are distributed among these distances:
25 11 0.14
26 64 0.83
27 2 0.03
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.36
Consensus pattern (25 bp):
TGATAATGGTTAGGTAAATGTTCCA
Found at i:98091147 original size:25 final size:26
Alignment explanation
Indices: 98091119--98091170 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
98091109 TTTACAGTTT
98091119 TACCCCTAGAGATAAATT-ACCGAAA
1 TACCCCTAGAGATAAATTGACCGAAA
* * *
98091144 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGAGATAAATTGACCGAAA
98091170 T
1 T
98091171 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGAGATAAATTGACCGAAA
Found at i:98094110 original size:28 final size:26
Alignment explanation
Indices: 98094079--98094142 Score: 65
Period size: 26 Copynumber: 2.4 Consensus size: 26
98094069 AATTACTATA
**
98094079 ATACCCCTATGTATGGAAAATTATTGTT
1 ATACCCCTA-G-ATGGAAAATTACCGTT
* * *
98094107 ATACCTCTAGGTGTAAAATTACCGTT
1 ATACCCCTAGATGGAAAATTACCGTT
98094133 ATACCCCTAG
1 ATACCCCTAG
98094143 GGTTAATTTT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
26 21 0.70
27 1 0.03
28 8 0.27
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.34
Consensus pattern (26 bp):
ATACCCCTAGATGGAAAATTACCGTT
Found at i:98094287 original size:27 final size:27
Alignment explanation
Indices: 98094247--98094554 Score: 185
Period size: 27 Copynumber: 11.2 Consensus size: 27
98094237 AGGAAGCGTC
* *
98094247 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
98094274 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
98094300 CCTGGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
*
98094328 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
98094355 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* *
98094382 CTGGTGACT-T-CATCACAA-TATCTGGCAGC
1 CTGGTGGCTCTGC--CACAATTATCT-G-A-T
* * ***** * *
98094411 CTCGCTGCGATTTCTG-TGGTGTGTA-ATGGT
1 CT-GGTG-G--CTCTGCCACAAT-TATCTGAT
*
98094441 -TGGGTGGCTATGCCACAATTATCTG-T
1 CT-GGTGGCTCTGCCACAATTATCTGAT
* *
98094467 CCTGGTGGCTATGCCACAATTATCTAAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
98094495 CTGGTGGCTCTGCCAC-ATATATCT-ATT
1 CTGGTGGCTCTGCCACAAT-TATCTGA-T
98094522 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
98094549 CTGGTG
1 CTGGTG
98094555 ACTTCATCAC
Statistics
Matches: 220, Mismatches: 32, Indels: 58
0.71 0.10 0.19
Matches are distributed among these distances:
25 1 0.00
26 26 0.12
27 167 0.76
28 11 0.05
29 6 0.03
30 3 0.01
32 1 0.00
33 2 0.01
34 3 0.01
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:98094330 original size:54 final size:54
Alignment explanation
Indices: 98094244--98094554 Score: 260
Period size: 54 Copynumber: 5.7 Consensus size: 54
98094234 TGGAGGAAGC
*
98094244 GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
98094298 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * *
98094352 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTGACT-T-CATCACA-ATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTGGCTCTGC--CACATATATCT
* * * * ***** * * * *
98094405 GGCAGCCTCGCT-GCGATTTCTGTGGTGTGTAATGGT-TGGGTGGCTATGCCACA-ATTATCT
1 -G--TCCT-GGTGGCTA-TGCCACAAT-TAT-CTGATCT-GGTGGCTCTGCCACATA-TATCT
*
98094465 GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* * *
98094519 ATTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
98094555 ACTTCATCAC
Statistics
Matches: 201, Mismatches: 37, Indels: 38
0.73 0.13 0.14
Matches are distributed among these distances:
52 1 0.00
53 18 0.09
54 134 0.67
55 4 0.02
56 9 0.04
57 10 0.05
58 1 0.00
59 15 0.07
60 8 0.04
61 1 0.00
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:98094552 original size:167 final size:167
Alignment explanation
Indices: 98094276--98094614 Score: 626
Period size: 167 Copynumber: 2.0 Consensus size: 167
98094266 TATCTAATCT
* *
98094276 GGTGGCTCTGCCACATATATCTGTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGC
1 GGTGGCTATGCCACATATATCTGTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGC
*
98094341 CACATATATCTGTTCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTTCATCACAATATCTG
66 CACATATATCTATTCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTTCATCACAATATCTG
*
98094406 GCAGCCTCGCTGCGATTTCTGTGGTGTGTAATGGTTG
131 GCAACCTCGCTGCGATTTCTGTGGTGTGTAATGGTTG
98094443 GGTGGCTATGCCACA-ATTATCTGTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTG
1 GGTGGCTATGCCACATA-TATCTGTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTG
98094507 CCACATATATCTATTCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTTCATCACAATATCT
65 CCACATATATCTATTCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTTCATCACAATATCT
98094572 GGCAACCTCGCTGCGATTTCTGTGGTGTGTAATGGTTG
130 GGCAACCTCGCTGCGATTTCTGTGGTGTGTAATGGTTG
98094610 GGTGG
1 GGTGG
98094615 GTCAAGTAGT
Statistics
Matches: 167, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
166 1 0.01
167 166 0.99
ACGTcount: A:0.18, C:0.23, G:0.24, T:0.34
Consensus pattern (167 bp):
GGTGGCTATGCCACATATATCTGTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTGC
CACATATATCTATTCTGGTGGCTCTGCCACAATATCTGTATCTGGTGACTTCATCACAATATCTG
GCAACCTCGCTGCGATTTCTGTGGTGTGTAATGGTTG
Found at i:98095655 original size:41 final size:42
Alignment explanation
Indices: 98095610--98095689 Score: 101
Period size: 41 Copynumber: 1.9 Consensus size: 42
98095600 CGGCACGAAG
* * *
98095610 CCTGCTAGACTTTAAGTCTGA-ACTCA-TTCACCGGCATTTTT
1 CCTGCTAGACTTGAAGCCCGATA-TCATTTCACCGGCATTTTT
*
98095651 CCTGCTAGGCTTGAAGCCCGATATCATTTCACCGGCATT
1 CCTGCTAGACTTGAAGCCCGATATCATTTCACCGGCATT
98095690 ATAGTCTGCT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
41 20 0.61
42 13 0.39
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (42 bp):
CCTGCTAGACTTGAAGCCCGATATCATTTCACCGGCATTTTT
Found at i:98095914 original size:28 final size:28
Alignment explanation
Indices: 98095883--98095954 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
98095873 TTGATATTTT
**
98095883 GCACACTAAGTTTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
*
98095911 GCACACTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
98095939 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
98095955 ATTTGATTGC
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.29, C:0.28, G:0.11, T:0.32
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:98101164 original size:13 final size:13
Alignment explanation
Indices: 98101146--98101174 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
98101136 CACAATGAAG
98101146 GTGAATGATGTAT
1 GTGAATGATGTAT
98101159 GTGAATGATGTAT
1 GTGAATGATGTAT
98101172 GTG
1 GTG
98101175 GCGGTGGAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (13 bp):
GTGAATGATGTAT
Found at i:98112168 original size:23 final size:23
Alignment explanation
Indices: 98112133--98112187 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 23
98112123 ACGACACGAG
* *
98112133 GTGCCTAAAATACGACACATAAA
1 GTGCCTGATATACGACACATAAA
*
98112156 GTGCCTGATATACTACACATAAA
1 GTGCCTGATATACGACACATAAA
98112179 GTGCCTGAT
1 GTGCCTGAT
98112188 CGGCAAACCC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.38, C:0.22, G:0.16, T:0.24
Consensus pattern (23 bp):
GTGCCTGATATACGACACATAAA
Found at i:98113916 original size:25 final size:25
Alignment explanation
Indices: 98113888--98113939 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
98113878 TTTGGCTTGA
* *
98113888 CATTTACTAAGCAATATCAGATATT
1 CATTTACTAAGCAACATCAAATATT
* *
98113913 CATTTATTAGGCAACATCAAATATT
1 CATTTACTAAGCAACATCAAATATT
98113938 CA
1 CA
98113940 AATTATTCTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.35
Consensus pattern (25 bp):
CATTTACTAAGCAACATCAAATATT
Found at i:98117331 original size:14 final size:14
Alignment explanation
Indices: 98117314--98117341 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
98117304 GGTTGCATTT
98117314 GATTTGTTGAAAAC
1 GATTTGTTGAAAAC
98117328 GATTTGTTGAAAAC
1 GATTTGTTGAAAAC
98117342 ATCAGATGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (14 bp):
GATTTGTTGAAAAC
Found at i:98117944 original size:22 final size:21
Alignment explanation
Indices: 98117881--98117944 Score: 65
Period size: 22 Copynumber: 3.0 Consensus size: 21
98117871 AGTAACAGTA
*
98117881 TGCAATAAAACTACCAGTAATT
1 TGCAAT-AAGCTACCAGTAATT
* * *
98117903 TGTAATAAGTTACTAGTAATT
1 TGCAATAAGCTACCAGTAATT
*
98117924 TGCAGATAAGCTACCAATAAT
1 TGCA-ATAAGCTACCAGTAAT
98117945 ATGTGATAAG
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
21 15 0.45
22 18 0.55
ACGTcount: A:0.42, C:0.14, G:0.12, T:0.31
Consensus pattern (21 bp):
TGCAATAAGCTACCAGTAATT
Found at i:98123242 original size:26 final size:26
Alignment explanation
Indices: 98123133--98123234 Score: 177
Period size: 26 Copynumber: 3.9 Consensus size: 26
98123123 CATGAAATTC
98123133 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
98123159 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
98123185 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
*
98123211 TTATCATGGAACATTTACCTAACC
1 TTATCATGAAACATTTACCTAACC
98123235 TTTTATCAAT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.32
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:98130061 original size:29 final size:29
Alignment explanation
Indices: 98130016--98130073 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
98130006 CTCTAGTTGA
*
98130016 TAAGGCAAAGATGGCCGAGGAAGTGAAGC
1 TAAGGCAAAGATAGCCGAGGAAGTGAAGC
*
98130045 TAAGGTAAAGATAGCCGAGGAAGTGAAGC
1 TAAGGCAAAGATAGCCGAGGAAGTGAAGC
98130074 GCGCGAAACG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.40, C:0.12, G:0.36, T:0.12
Consensus pattern (29 bp):
TAAGGCAAAGATAGCCGAGGAAGTGAAGC
Found at i:98137416 original size:47 final size:47
Alignment explanation
Indices: 98137344--98137474 Score: 174
Period size: 47 Copynumber: 2.8 Consensus size: 47
98137334 CAAAATCGAT
* * *
98137344 AAGTACCTATACCATGGCCCATAACCAAATCAATGTAACTTATTCT-G
1 AAGTACCTATACCATGGCCCGTAACCAAATCAAGGTAAC-TATTCTCA
* * *
98137391 GAGTACCTATACCATGGCCCGTAACCAAATCAAGGTAGCTCTTCTCA
1 AAGTACCTATACCATGGCCCGTAACCAAATCAAGGTAACTATTCTCA
* *
98137438 AAATACCTATACCATGGCCCGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCCGTAACCAAATCAAGGTA
98137475 TTATATGCAC
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
46 5 0.07
47 69 0.93
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (47 bp):
AAGTACCTATACCATGGCCCGTAACCAAATCAAGGTAACTATTCTCA
Found at i:98137947 original size:9 final size:9
Alignment explanation
Indices: 98137933--98137966 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
98137923 CCTATTTCAT
98137933 AAATTCACA
1 AAATTCACA
98137942 AAATTCACA
1 AAATTCACA
* *
98137951 TAGTTCACA
1 AAATTCACA
98137960 AAATTCA
1 AAATTCA
98137967 ATTTAACTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.50, C:0.21, G:0.03, T:0.26
Consensus pattern (9 bp):
AAATTCACA
Found at i:98141606 original size:13 final size:13
Alignment explanation
Indices: 98141584--98141613 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
98141574 ATTAGTATTG
98141584 TTTTAATTTTTAT
1 TTTTAATTTTTAT
*
98141597 TTTTATTTTTTAT
1 TTTTAATTTTTAT
98141610 TTTT
1 TTTT
98141614 TCCATTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (13 bp):
TTTTAATTTTTAT
Found at i:98141715 original size:11 final size:10
Alignment explanation
Indices: 98141701--98141775 Score: 60
Period size: 11 Copynumber: 6.9 Consensus size: 10
98141691 TTTATTTAGT
98141701 TTTATGTTTTA
1 TTTAT-TTTTA
*
98141712 TTTATTTTATT
1 TTTATTTT-TA
98141723 TTTATTTTTA
1 TTTATTTTTA
*
98141733 TTTTTCTTTTA
1 TTTAT-TTTTA
*
98141744 TTTTTCTTGTTA
1 TTTAT-TT-TTA
*
98141756 TTTTTTTTTA
1 TTTATTTTTA
98141766 TTTTATTTTT
1 -TTTATTTTT
98141776 CAGAATTTTG
Statistics
Matches: 56, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
10 11 0.20
11 37 0.66
12 8 0.14
ACGTcount: A:0.13, C:0.03, G:0.03, T:0.81
Consensus pattern (10 bp):
TTTATTTTTA
Found at i:98141715 original size:21 final size:21
Alignment explanation
Indices: 98141691--98141775 Score: 66
Period size: 22 Copynumber: 4.0 Consensus size: 21
98141681 TTATTTAAAT
98141691 TTTA-TTTAGTTTTATGTTTTA
1 TTTATTTTAGTTTTAT-TTTTA
*
98141712 TTTATTTTATTTTTATTTTTA
1 TTTATTTTAGTTTTATTTTTA
* * * *
98141733 TTTTTCTTTTATTTTTCTTGTTA
1 --TTTATTTTAGTTTTATTTTTA
*
98141756 TTTTTTTTTA-TTTTATTTTT
1 -TTTATTTTAGTTTTATTTTT
98141776 CAGAATTTTG
Statistics
Matches: 54, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
21 17 0.31
22 19 0.35
23 18 0.33
ACGTcount: A:0.14, C:0.02, G:0.04, T:0.80
Consensus pattern (21 bp):
TTTATTTTAGTTTTATTTTTA
Found at i:98141743 original size:32 final size:32
Alignment explanation
Indices: 98141656--98141769 Score: 85
Period size: 32 Copynumber: 3.5 Consensus size: 32
98141646 ACAGTGTTAG
* *
98141656 ATTTTT-TTTGTTA-TTTTCTTTTGAATTATTTA
1 ATTTTTATTT-TTATTTTTCTTTT-ATTTATTTT
* *
98141688 AATTTTA--TTTAGTTTTATGTTTTATTTATTTT
1 ATTTTTATTTTTA-TTTT-TCTTTTATTTATTTT
98141720 ATTTTTATTTTTATTTTTCTTTTATTT-TTCTT
1 ATTTTTATTTTTATTTTTCTTTTATTTATT-TT
* *
98141752 GTTATTTTTTTTTATTTT
1 ATT-TTTATTTTTATTTT
98141770 ATTTTTCAGA
Statistics
Matches: 66, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
30 3 0.05
31 3 0.05
32 34 0.52
33 22 0.33
34 4 0.06
ACGTcount: A:0.17, C:0.03, G:0.04, T:0.76
Consensus pattern (32 bp):
ATTTTTATTTTTATTTTTCTTTTATTTATTTT
Found at i:98141775 original size:6 final size:6
Alignment explanation
Indices: 98141695--98141775 Score: 68
Period size: 6 Copynumber: 14.5 Consensus size: 6
98141685 TTAAATTTTA
* *
98141695 TTTAGT TTTATGT TTTA-- TTTA-T TTTATT TTTATT TTTATT TTT-CT
1 TTTATT TTTAT-T TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
* *
98141740 TTTATT TTTCTT GTTA-T TTT-TT TTTA-T TTTATT TTT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTT
98141776 CAGAATTTTG
Statistics
Matches: 61, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
4 4 0.07
5 20 0.33
6 32 0.52
7 5 0.08
ACGTcount: A:0.14, C:0.02, G:0.04, T:0.80
Consensus pattern (6 bp):
TTTATT
Found at i:98141816 original size:29 final size:29
Alignment explanation
Indices: 98141762--98141833 Score: 121
Period size: 29 Copynumber: 2.6 Consensus size: 29
98141752 GTTATTTTTT
*
98141762 TTTATTTTA-TTT-TTCAGAATTTTGTGC
1 TTTATTTTATTTTATTCAGAATTCTGTGC
98141789 TTTATTTTATTTTATTCAGAATTCTGTGC
1 TTTATTTTATTTTATTCAGAATTCTGTGC
98141818 TTTATTTTATTTTATT
1 TTTATTTTATTTTATT
98141834 ATGTACTTTA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
27 9 0.21
28 3 0.07
29 30 0.71
ACGTcount: A:0.19, C:0.07, G:0.08, T:0.65
Consensus pattern (29 bp):
TTTATTTTATTTTATTCAGAATTCTGTGC
Found at i:98147177 original size:40 final size:40
Alignment explanation
Indices: 98147118--98147329 Score: 277
Period size: 40 Copynumber: 5.3 Consensus size: 40
98147108 CATTTGAATG
* *
98147118 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
98147158 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * *
98147198 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
98147238 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* *
98147278 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
98147318 ATATCC-GGCTAA
1 ATATCCGGGCTAA
98147330 ATTCCGAAGA
Statistics
Matches: 148, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
39 10 0.07
40 133 0.90
41 5 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:98147255 original size:80 final size:80
Alignment explanation
Indices: 98147122--98147329 Score: 337
Period size: 80 Copynumber: 2.6 Consensus size: 80
98147112 TGAATGATAT
*
98147122 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
*
98147187 TGCGAGTTGCTATAC
66 TGCGAGTTGATATAC
*
98147202 CCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
*
98147267 TGCGAGTTGATATAT
66 TGCGAGTTGATATAC
* * * *
98147282 CCGGGCTAAGACCCGAAGGCATTTGTGCTTGTGGTTATATCC-GGCTAA
1 CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAA
98147330 ATTCCGAAGA
Statistics
Matches: 119, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
79 6 0.05
80 113 0.95
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTTGATATAC
Found at i:98149810 original size:15 final size:14
Alignment explanation
Indices: 98149783--98149817 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
98149773 TTGGTTTTGT
98149783 TTTTATATTTGTTA
1 TTTTATATTTGTTA
*
98149797 TTTTATGTTATGTTA
1 TTTTATATT-TGTTA
98149812 TTTTAT
1 TTTTAT
98149818 TTGCAAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.42
15 11 0.58
ACGTcount: A:0.20, C:0.00, G:0.09, T:0.71
Consensus pattern (14 bp):
TTTTATATTTGTTA
Found at i:98154518 original size:19 final size:19
Alignment explanation
Indices: 98154493--98154605 Score: 139
Period size: 19 Copynumber: 6.2 Consensus size: 19
98154483 AATCTTTAAG
98154493 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
98154512 TATATGCAATCTTAGATGT
1 GATATGCAATCTTAGATAT
98154531 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
98154550 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
98154567 GATATG--AT-AT-GATAT
1 GATATGCAATCTTAGATAT
98154582 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
98154603 GAT
1 GAT
98154606 TTTGTAATCT
Statistics
Matches: 80, Mismatches: 6, Indels: 14
0.80 0.06 0.14
Matches are distributed among these distances:
15 11 0.14
16 1 0.01
17 21 0.26
18 1 0.01
19 38 0.47
21 8 0.10
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:98154550 original size:14 final size:15
Alignment explanation
Indices: 98154531--98154568 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
98154521 TCTTAGATGT
98154531 GATATG-CAATCTTA
1 GATATGACAATCTTA
98154545 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
98154562 GATATGA
1 GATATGA
98154569 TATGATATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.29
15 1 0.05
17 14 0.67
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:98154570 original size:5 final size:5
Alignment explanation
Indices: 98154562--98154587 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
98154552 TACAATCTTA
98154562 GATAT GATAT GATAT GATAT GATAT G
1 GATAT GATAT GATAT GATAT GATAT G
98154588 CAATCTTGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (5 bp):
GATAT
Found at i:98156264 original size:53 final size:53
Alignment explanation
Indices: 98156181--98156286 Score: 194
Period size: 53 Copynumber: 2.0 Consensus size: 53
98156171 TATTGAATAG
*
98156181 AAGGGGTTGTGATTGATCTTCATTAGGTTAACAAGTCCCAAAATCTTATATAA
1 AAGGGGTTGTGATGGATCTTCATTAGGTTAACAAGTCCCAAAATCTTATATAA
*
98156234 AAGGGGTTGTGATGGATCTTCATTATGTTAACAAGTCCCAAAATCTTATATAA
1 AAGGGGTTGTGATGGATCTTCATTAGGTTAACAAGTCCCAAAATCTTATATAA
98156287 TTGGGATAGA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.34, C:0.13, G:0.19, T:0.34
Consensus pattern (53 bp):
AAGGGGTTGTGATGGATCTTCATTAGGTTAACAAGTCCCAAAATCTTATATAA
Found at i:98159419 original size:15 final size:15
Alignment explanation
Indices: 98159383--98159412 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
98159373 TGACCTTCAG
98159383 TCAAGTACCGGTCAA
1 TCAAGTACCGGTCAA
98159398 TCAAGTACCGGTCAA
1 TCAAGTACCGGTCAA
98159413 CAAAGTAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (15 bp):
TCAAGTACCGGTCAA
Found at i:98161209 original size:16 final size:16
Alignment explanation
Indices: 98161190--98161232 Score: 54
Period size: 14 Copynumber: 2.8 Consensus size: 16
98161180 TTATTTTTCT
98161190 TATATATTCTTTTATA
1 TATATATTCTTTTATA
* *
98161206 TATAT-TT-TATTATG
1 TATATATTCTTTTATA
98161220 TATATATTCTTTT
1 TATATATTCTTTT
98161233 TTACTAATTG
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
14 10 0.45
15 4 0.18
16 8 0.36
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.65
Consensus pattern (16 bp):
TATATATTCTTTTATA
Found at i:98162710 original size:23 final size:22
Alignment explanation
Indices: 98162682--98162725 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
98162672 AATTAAATCA
98162682 CTAAGATTACAAAATCATATCTT
1 CTAAGATTAC-AAATCATATCTT
* *
98162705 CTAAGATTGCATATCATATCT
1 CTAAGATTACAAATCATATCT
98162726 AAGATTGCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.39, C:0.18, G:0.07, T:0.36
Consensus pattern (22 bp):
CTAAGATTACAAATCATATCTT
Found at i:98162728 original size:19 final size:19
Alignment explanation
Indices: 98162704--98162775 Score: 123
Period size: 19 Copynumber: 3.9 Consensus size: 19
98162694 AATCATATCT
98162704 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
98162723 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
98162741 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
98162758 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
98162776 TAAAAATTAT
Statistics
Matches: 50, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
17 16 0.32
18 16 0.32
19 18 0.36
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:98162760 original size:35 final size:37
Alignment explanation
Indices: 98162697--98162775 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
98162687 ATTACAAAAT
98162697 CATATC-T-TCTAAGATTGCATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG-ATATCATATCTAAGATTG
98162733 CA-ATCATATCTAAGATTG-TATCATATCTAAGATTG
1 CATATCATATCTAAGATTGATATCATATCTAAGATTG
98162768 CATATCAT
1 CATATCAT
98162776 TAAAAATTAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 22 0.55
36 8 0.20
37 10 0.25
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.38
Consensus pattern (37 bp):
CATATCATATCTAAGATTGATATCATATCTAAGATTG
Found at i:98162773 original size:14 final size:15
Alignment explanation
Indices: 98162718--98162773 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 15
98162708 AGATTGCATA
98162718 TCATATCTAAGATTG
1 TCATATCTAAGATTG
98162733 CAATCATATCTAAGATTG
1 ---TCATATCTAAGATTG
98162751 TATCATATCTAAGATTG
1 --TCATATCTAAGATTG
98162768 -CATATC
1 TCATATC
98162774 ATTAAAAATT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
14 6 0.16
17 16 0.43
18 15 0.41
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (15 bp):
TCATATCTAAGATTG
Found at i:98164777 original size:42 final size:40
Alignment explanation
Indices: 98164688--98164810 Score: 131
Period size: 41 Copynumber: 3.0 Consensus size: 40
98164678 ATTGTAAAAC
* *
98164688 ACAGAGCAATAGCGACGTTTTGATAAAAACGCCGCTAAA-A
1 ACAGAGCAATAGCGGCGTTTTG-TTAAAACGCCGCTAAAGA
**
98164728 ATTGAGCAATAGCGGCGTTTTTTGTTAAAACGCCGCTAAAGA
1 ACAGAGCAATAGCGGCG--TTTTGTTAAAACGCCGCTAAAGA
* * * *
98164770 CCAGAGCATTAGCGGCGCTTTTGGTGAAACGCCGCTAAAGA
1 ACAGAGCAATAGCGGCG-TTTTGTTAAAACGCCGCTAAAGA
98164811 TACCAACTAG
Statistics
Matches: 69, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
40 14 0.20
41 36 0.52
42 19 0.28
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.22
Consensus pattern (40 bp):
ACAGAGCAATAGCGGCGTTTTGTTAAAACGCCGCTAAAGA
Found at i:98164882 original size:14 final size:15
Alignment explanation
Indices: 98164848--98164882 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
98164838 ACTATTTTAA
98164848 GGTTTAGGGATTATG
1 GGTTTAGGGATTATG
98164863 GGTTTAGGGATTAT-
1 GGTTTAGGGATTATG
98164877 GGTTTA
1 GGTTTA
98164883 AAGGTAGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.20, C:0.00, G:0.37, T:0.43
Consensus pattern (15 bp):
GGTTTAGGGATTATG
Found at i:98164954 original size:7 final size:7
Alignment explanation
Indices: 98164843--98165008 Score: 84
Period size: 7 Copynumber: 22.7 Consensus size: 7
98164833 GTCTCACTAT
*
98164843 TTTAAGG
1 TTTAGGG
98164850 TTTAGGG
1 TTTAGGG
*
98164857 ATTATGGG
1 TTTA-GGG
98164865 TTTAGGG
1 TTTAGGG
* *
98164872 ATTATGG
1 TTTAGGG
98164879 TTTAAAGGTAG
1 TTT--AGG--G
98164890 TTTAAGGG
1 TTT-AGGG
*
98164898 -TTGGGG
1 TTTAGGG
*
98164904 TTTAAGG
1 TTTAGGG
98164911 TTTA-GG
1 TTTAGGG
98164917 TGTTAGGG
1 T-TTAGGG
*
98164925 GTTAGGGG
1 TTTA-GGG
* *
98164933 TTCATGG
1 TTTAGGG
98164940 TTTAGGG
1 TTTAGGG
98164947 TTTAGGG
1 TTTAGGG
* *
98164954 TTCATGG
1 TTTAGGG
* *
98164961 TTTATGT
1 TTTAGGG
*
98164968 TTTATGG
1 TTTAGGG
**
98164975 TTTAATG
1 TTTAGGG
98164982 TTTAGGG
1 TTTAGGG
*
98164989 ATTAGGAG
1 TTTAGG-G
98164997 TTTAGGG
1 TTTAGGG
98165004 TTTAG
1 TTTAG
98165009 ATTAGTTAGT
Statistics
Matches: 122, Mismatches: 27, Indels: 20
0.72 0.16 0.12
Matches are distributed among these distances:
6 6 0.05
7 86 0.70
8 20 0.16
9 2 0.02
10 4 0.03
11 4 0.03
ACGTcount: A:0.20, C:0.01, G:0.36, T:0.43
Consensus pattern (7 bp):
TTTAGGG
Found at i:98165644 original size:16 final size:16
Alignment explanation
Indices: 98165623--98165654 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
98165613 AAAAATCTTC
*
98165623 ATAAAAAATTTAAAAA
1 ATAAAAAACTTAAAAA
98165639 ATAAAAAACTTAAAAA
1 ATAAAAAACTTAAAAA
98165655 TTTAATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.22
Consensus pattern (16 bp):
ATAAAAAACTTAAAAA
Found at i:98169425 original size:27 final size:27
Alignment explanation
Indices: 98169390--98169442 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
98169380 TATTTTGATA
98169390 ATGAATTTTA-AACT-TTTTATATTTTTC
1 ATGAATTTTATAA-TATTTTAT-TTTTTC
*
98169417 ATGACTTTTATAATATTTTATTTTTT
1 ATGAATTTTATAATATTTTATTTTTT
98169443 AAAATTTTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
27 15 0.65
28 8 0.35
ACGTcount: A:0.28, C:0.06, G:0.04, T:0.62
Consensus pattern (27 bp):
ATGAATTTTATAATATTTTATTTTTTC
Found at i:98171584 original size:18 final size:19
Alignment explanation
Indices: 98171548--98171595 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
98171538 TGAAGCAGGA
98171548 ATATCGATACCTTAGAAAAT
1 ATATCGATACCTTA-AAAAT
* *
98171568 ATATGGATACCTTAAAAAA
1 ATATCGATACCTTAAAAAT
98171587 AGTATCGAT
1 A-TATCGAT
98171596 GTTGGATCGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.46, C:0.12, G:0.12, T:0.29
Consensus pattern (19 bp):
ATATCGATACCTTAAAAAT
Found at i:98176149 original size:20 final size:21
Alignment explanation
Indices: 98176121--98176160 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
98176111 TGGAGCAGGA
*
98176121 ATATCGATACCTT-AGAAAAT
1 ATATAGATACCTTAAGAAAAT
98176141 ATATAGATACCTTAAGAAAA
1 ATATAGATACCTTAAGAAAA
98176161 GTATCGATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (21 bp):
ATATAGATACCTTAAGAAAAT
Found at i:98180767 original size:7 final size:7
Alignment explanation
Indices: 98180755--98180797 Score: 50
Period size: 7 Copynumber: 6.0 Consensus size: 7
98180745 TTTTTTATAC
98180755 TAATAAA
1 TAATAAA
98180762 TAATAAA
1 TAATAAA
98180769 TAATGAAA
1 TAAT-AAA
* *
98180777 TGATATA
1 TAATAAA
*
98180784 TAATATA
1 TAATAAA
98180791 TAATAAA
1 TAATAAA
98180798 AGAAAGATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
7 25 0.81
8 6 0.19
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.33
Consensus pattern (7 bp):
TAATAAA
Found at i:98182505 original size:24 final size:27
Alignment explanation
Indices: 98182477--98182528 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
98182467 GTAAATGGAC
98182477 TTTA-TTTTAATA-ATTT-TTTATTTT
1 TTTATTTTTAATATATTTATTTATTTT
*
98182501 TTTATTTTTATTATATTTATTTATTTT
1 TTTATTTTTAATATATTTATTTATTTT
98182528 T
1 T
98182529 ACGGGCTCGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 4 0.17
25 7 0.29
26 4 0.17
27 9 0.38
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (27 bp):
TTTATTTTTAATATATTTATTTATTTT
Found at i:98182789 original size:44 final size:44
Alignment explanation
Indices: 98182737--98183331 Score: 830
Period size: 44 Copynumber: 13.5 Consensus size: 44
98182727 ACTCAAGAAT
* * *
98182737 GCCAAATCTGTTATCTCCGACCTGCTCTCTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * * * *
98182781 GCCGAATCTGTTATCTTTGATATGCTCTCTGACAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * *
98182825 ACCAAATATGTTATCTTCGATCTGCTCTCTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* *
98182869 GACAAATCTGCTATCTTTGATCTGCTCTCTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* *
98182913 GCCAAATCTGTTATCTTCGATCTGCTCTTTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * *
98182957 GCCAAATCTACTATCTTCGATCTGCTCTCTGACAATACAAAAAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * * **
98183001 ACCAAATCTGCTATTTTCGATCTGCTCTCTAACAATACAGAGGT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
98183045 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
** * * *
98183089 GTAAAATCTGTTCTCTTCAATCTGCTCTCTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * * *
98183133 GCCAAATCTGCTATCTTCGATTTGCTCCCTAACAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* *
98183177 GTCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAT
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* *
98183221 GTCAAATCTGCTATCTTCGATCTGCTCTTTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
* * * *
98183265 GCCAAATCTGCTCTCTTTGATTTTCTCTCTGACAATACAGAGAC
1 GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
98183309 GCCAAATCTGCTATCTTCGATCT
1 GCCAAATCTGCTATCTTCGATCT
98183332 ACATTGTCTT
Statistics
Matches: 483, Mismatches: 68, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 483 1.00
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (44 bp):
GCCAAATCTGCTATCTTCGATCTGCTCTCTGACAATACAGAGAC
Found at i:98191167 original size:12 final size:12
Alignment explanation
Indices: 98191150--98191174 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
98191140 GATATTTGCT
98191150 AATTGCTCCTGC
1 AATTGCTCCTGC
98191162 AATTGCTCCTGC
1 AATTGCTCCTGC
98191174 A
1 A
98191175 TTTCTTTCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.32, G:0.16, T:0.32
Consensus pattern (12 bp):
AATTGCTCCTGC
Found at i:98195221 original size:7 final size:7
Alignment explanation
Indices: 98195209--98195244 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
98195199 TTTTTGATAC
98195209 TAATAAA
1 TAATAAA
98195216 TAATAAA
1 TAATAAA
98195223 TAATGAAA
1 TAAT-AAA
*
98195231 TAATATA
1 TAATAAA
98195238 TAATAAA
1 TAATAAA
98195245 AGGAAGATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 19 0.73
8 7 0.27
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (7 bp):
TAATAAA
Done.