Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 29 of 295
Found at i:7931871 original size:88 final size:88
Alignment explanation
Indices: 7931687--7931875 Score: 222
Period size: 88 Copynumber: 2.1 Consensus size: 88
7931677 TTCACCGTCT
* * *
7931687 TTTGATCTGCTTCCCTACTGCTTAGGGTGATAAGATCTTTAAAATTCAGCTTGTTACCCTACTGC
1 TTTGATCTGCTTCCCTACTGCTTAGGGTGATAAGATCTTTAAAATTCAACCTGCTACCCTACTGC
*
7931752 TTAGGGGGTTAAAGCTTGTTGCC
66 TTAGGGGGTTAAAGCTTGGTGCC
* * * *
7931775 TTCGATCTGTTTCCCTACTGCTTATGGG-GTTAAGATCTTGT-AAATTTAACCTGCTACCCTACT
1 TTTGATCTGCTTCCCTACTGCTTA-GGGTGATAAGATCTT-TAAAATTCAACCTGCTACCCTACT
* * * *
7931838 GCTTAGGGGTTTAAGGTTTGGTG-G
64 GCTTAGGGGGTTAAAGCTTGGTGCC
7931862 TTTGAATCTGCTTC
1 TTTG-ATCTGCTTC
7931876 ACTGCAATTT
Statistics
Matches: 84, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
87 3 0.04
88 77 0.92
89 4 0.05
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (88 bp):
TTTGATCTGCTTCCCTACTGCTTAGGGTGATAAGATCTTTAAAATTCAACCTGCTACCCTACTGC
TTAGGGGGTTAAAGCTTGGTGCC
Found at i:7931902 original size:222 final size:222
Alignment explanation
Indices: 7931565--7932294 Score: 1171
Period size: 222 Copynumber: 3.3 Consensus size: 222
7931555 GGCTTGCTAT
* * * * * *
7931565 CCTACTGCTT-AGGGTGATAAGATC-TGTAGATCTTCAGCCTGTTTCCTTACTGCTTAGGGGGTT
1 CCTACTGCTTAAGGG-GTTAAGATCTTGTAAAT-TT-AACCTGTTACCCTACTGCTTAGGGGTTT
* *
7931628 AAGGCTTGGTGGTTTGAATCTGCTTCACTGCAACTTCAGGAGGGCAAGATTCACCGTCTTTTGAT
63 AAGGTTTGGTGGTTTGAATCTGCTTCACTGCAATTTCAGGAGGGCAAGATTCACCGTCTTTTGAT
7931693 CTGCTTCCCTACTGCTTAGGGTGATAAGATCTTTAAAATTCAGCTTGTTACCCTACTGCTTAGGG
128 CTGCTTCCCTACTGCTTAGGGTGATAAGATCTTTAAAATTCAGCTTGTTACCCTACTGCTTAGGG
*
7931758 GGTTAAAGCTTGTTGCCTTCGATCTGTTTC
193 GGTTAAAGCTTATTGCCTTCGATCTGTTTC
* *
7931788 CCTACTGCTTATGGGGTTAAGATCTTGTAAATTTAACCTGCTACCCTACTGCTTAGGGGTTTAAG
1 CCTACTGCTTAAGGGGTTAAGATCTTGTAAATTTAACCTGTTACCCTACTGCTTAGGGGTTTAAG
7931853 GTTTGGTGGTTTGAATCTGCTTCACTGCAATTTCAGGAGGGCAAGATTCACCGTCTTTTGATCTG
66 GTTTGGTGGTTTGAATCTGCTTCACTGCAATTTCAGGAGGGCAAGATTCACCGTCTTTTGATCTG
*
7931918 CTTCCCTATTGCTTAGGGTGATAAGATCTTTAAAATTCAGCTTGTTACCCTACTGCTTAGGGGGT
131 CTTCCCTACTGCTTAGGGTGATAAGATCTTTAAAATTCAGCTTGTTACCCTACTGCTTAGGGGGT
*
7931983 TAAAGCTTATTGCCTTCGATCTGTTTT
196 TAAAGCTTATTGCCTTCGATCTGTTTC
* * *
7932010 CCTACTGCTTAAGGGATTAAGATCTTATAAATTTAACCTGTTACCCTACTGCTTAGGGGTTTAAA
1 CCTACTGCTTAAGGGGTTAAGATCTTGTAAATTTAACCTGTTACCCTACTGCTTAGGGGTTTAAG
* * *
7932075 GTTTGGTGGTTTGAATCTGCTTCACTGTAATTTCAGGAGGACAAGATTCACCGTCTTTTGATCTA
66 GTTTGGTGGTTTGAATCTGCTTCACTGCAATTTCAGGAGGGCAAGATTCACCGTCTTTTGATCTG
*
7932140 CTTCCCTACTGCTTAGGGTGATAAGATCTTTAAAATTTAGCTTGTTACCCTACTGCTTA-GGGGT
131 CTTCCCTACTGCTTAGGGTGATAAGATCTTTAAAATTCAGCTTGTTACCCTACTGCTTAGGGGGT
*
7932204 TAAAGCTTATTGCTTTCGATCTGTTTC
196 TAAAGCTTATTGCCTTCGATCTGTTTC
* * *
7932231 CCTACTGCTTAGGGGGTTAAGATC-TGTACATCTTCAGCCTGTTACCCTACTGCTTAGGGGTTTA
1 CCTACTGCTTAAGGGGTTAAGATCTTGTAAAT-TT-AACCTGTTACCCTACTGCTTAGGGGTTTA
7932295 GGCTCACCAT
Statistics
Matches: 473, Mismatches: 30, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
220 5 0.01
221 54 0.11
222 385 0.81
223 20 0.04
224 9 0.02
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.37
Consensus pattern (222 bp):
CCTACTGCTTAAGGGGTTAAGATCTTGTAAATTTAACCTGTTACCCTACTGCTTAGGGGTTTAAG
GTTTGGTGGTTTGAATCTGCTTCACTGCAATTTCAGGAGGGCAAGATTCACCGTCTTTTGATCTG
CTTCCCTACTGCTTAGGGTGATAAGATCTTTAAAATTCAGCTTGTTACCCTACTGCTTAGGGGGT
TAAAGCTTATTGCCTTCGATCTGTTTC
Found at i:7932061 original size:88 final size:88
Alignment explanation
Indices: 7931912--7932075 Score: 224
Period size: 88 Copynumber: 1.9 Consensus size: 88
7931902 ACCGTCTTTT
* * * *
7931912 GATCTGCTTCCCTATTGCTTAGGGTGATAAGATCTTTAAAATTCAGCTTGTTACCCTACTGCTTA
1 GATCTGCTTCCCTACTGCTTAAGGTGATAAGATCTTTAAAATTCAACCTGTTACCCTACTGCTTA
7931977 GGGGGTTAAAGCTTATTGCCTTC
66 GGGGGTTAAAGCTTATTGCCTTC
* * *
7932000 GATCTGTTTTCCTACTGCTTAAGG-GATTAAGATC-TTATAAATTTAACCTGTTACCCTACTGCT
1 GATCTGCTTCCCTACTGCTTAAGGTGA-TAAGATCTTTA-AAATTCAACCTGTTACCCTACTGCT
*
7932063 TAGGGGTTTAAAG
64 TAGGGGGTTAAAG
7932076 TTTGGTGGTT
Statistics
Matches: 66, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
87 5 0.08
88 61 0.92
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.38
Consensus pattern (88 bp):
GATCTGCTTCCCTACTGCTTAAGGTGATAAGATCTTTAAAATTCAACCTGTTACCCTACTGCTTA
GGGGGTTAAAGCTTATTGCCTTC
Found at i:7932093 original size:88 final size:88
Alignment explanation
Indices: 7931909--7932097 Score: 213
Period size: 88 Copynumber: 2.1 Consensus size: 88
7931899 TTCACCGTCT
* * * *
7931909 TTTGATCTGCTTCCCTATTGCTTAGGGTGATAAGATCTTTAAAATTCAGCTTGTTACCCTACTGC
1 TTTGATCTGCTTCCCTACTGCTTAAGGTGATAAGATCTTTAAAATTCAACCTGTTACCCTACTGC
*
7931974 TTAGGGGGTTAAAGCTTATTGCC
66 TTAGGGGGTTAAAGCTTAGTGCC
* * * *
7931997 TTCGATCTGTTTTCCTACTGCTTAAGG-GATTAAGATC-TTATAAATTTAACCTGTTACCCTACT
1 TTTGATCTGCTTCCCTACTGCTTAAGGTGA-TAAGATCTTTA-AAATTCAACCTGTTACCCTACT
* * * *
7932060 GCTTAGGGGTTTAAAGTTTGGTG-G
64 GCTTAGGGGGTTAAAGCTTAGTGCC
7932084 TTTGAATCTGCTTC
1 TTTG-ATCTGCTTC
7932098 ACTGTAATTT
Statistics
Matches: 82, Mismatches: 16, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
87 8 0.10
88 74 0.90
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (88 bp):
TTTGATCTGCTTCCCTACTGCTTAAGGTGATAAGATCTTTAAAATTCAACCTGTTACCCTACTGC
TTAGGGGGTTAAAGCTTAGTGCC
Found at i:7932244 original size:43 final size:41
Alignment explanation
Indices: 7932182--7932384 Score: 126
Period size: 43 Copynumber: 4.7 Consensus size: 41
7932172 AAATTTAGCT
7932182 TGTTACCCTACTGCTTAGGGGTTAAAGCTTATTGCTTTCGATC
1 TGTTACCCTACTGCTTAGGGGTTAAAGCTTA-T-CTTTCGATC
* * *
7932225 TGTTTCCCTACTGCTTAGGGGGTTAAGATCTGTA-CATCTTC-AGCC
1 TGTTACCCTACTGCTTA-GGGGTTAA-AGCT-TATC-T-TTCGA-TC
* * * * *
7932270 TGTTACCCTACTGCTTAGGGGTTTAGGCTCACCATCCTCGATC
1 TGTTACCCTACTGCTTAGGGGTTAAAGCTTATC-T-TTCGATC
* * ** *
7932313 TGTTTCCCTACTGCTTAGGGGTTTAAGATCTGTA-AATTC-AGC
1 TGTTACCCTACTGCTTAGGGG-TTAA-AGCT-TATCTTTCGATC
7932355 TTGTTACCCTACTGCTTAGGGGGTTAAAGC
1 -TGTTACCCTACTGCTTA-GGGGTTAAAGC
7932385 CTGTGAACTC
Statistics
Matches: 126, Mismatches: 21, Indels: 27
0.72 0.12 0.16
Matches are distributed among these distances:
42 5 0.04
43 68 0.54
44 25 0.20
45 25 0.20
46 3 0.02
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (41 bp):
TGTTACCCTACTGCTTAGGGGTTAAAGCTTATCTTTCGATC
Found at i:7932312 original size:88 final size:86
Alignment explanation
Indices: 7932141--7932384 Score: 305
Period size: 88 Copynumber: 2.8 Consensus size: 86
7932131 TTTGATCTAC
* * *
7932141 TTCCCTACTGCTTAGGGTGATAAGATCTTTAAAATTT-AGCTTGTTACCCTACTGCTTAGGGGTT
1 TTCCCTACTGCTTAGGGGGTTAAGATCTGT--AATTTCAGCTTGTTACCCTACTGCTTAGGGGTT
* * *
7932205 AAAGCTTATTGCTTTCGATCTGT
64 AAAGCTCAATGCTCTCGATCTGT
*
7932228 TTCCCTACTGCTTAGGGGGTTAAGATCTGTACATCTTCAGCCTGTTACCCTACTGCTTAGGGGTT
1 TTCCCTACTGCTTAGGGGGTTAAGATCTGTA-AT-TTCAGCTTGTTACCCTACTGCTTAGGGGTT
* *
7932293 TAGGCTCACCAT-C-CTCGATCTGT
64 AAAGCTCA--ATGCTCTCGATCTGT
* *
7932316 TTCCCTACTGCTTAGGGGTTTAAGATCTGTAAATTCAGCTTGTTACCCTACTGCTTAGGGGGTTA
1 TTCCCTACTGCTTAGGGGGTTAAGATCTGTAATTTCAGCTTGTTACCCTACTGCTTA-GGGGTTA
7932381 AAGC
65 AAGC
7932385 CTGTGAACTC
Statistics
Matches: 137, Mismatches: 14, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
85 1 0.01
86 25 0.18
87 39 0.28
88 70 0.51
89 1 0.01
90 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.36
Consensus pattern (86 bp):
TTCCCTACTGCTTAGGGGGTTAAGATCTGTAATTTCAGCTTGTTACCCTACTGCTTAGGGGTTAA
AGCTCAATGCTCTCGATCTGT
Found at i:7944670 original size:19 final size:21
Alignment explanation
Indices: 7944643--7944692 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
7944633 CACATAGTAT
7944643 ATATATACAT-ATATAT-AAA
1 ATATATACATAATATATAAAA
*
7944662 ATGTATACATAATATATAAAA
1 ATATATACATAATATATAAAA
7944683 ATATATACAT
1 ATATATACAT
7944693 GCATATATTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 9 0.33
20 6 0.22
21 12 0.44
ACGTcount: A:0.56, C:0.06, G:0.02, T:0.36
Consensus pattern (21 bp):
ATATATACATAATATATAAAA
Found at i:7955338 original size:9 final size:9
Alignment explanation
Indices: 7955324--7955373 Score: 55
Period size: 9 Copynumber: 5.3 Consensus size: 9
7955314 ACGTGTTTCA
7955324 TTTAATATT
1 TTTAATATT
*
7955333 TTTAATATA
1 TTTAATATT
7955342 TTTAATAGTT
1 TTTAATA-TT
* *
7955352 TATATTTATT
1 TTTA-ATATT
7955362 TTTAATATT
1 TTTAATATT
7955371 TTT
1 TTT
7955374 TTAATTTTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
9 22 0.67
10 9 0.27
11 2 0.06
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (9 bp):
TTTAATATT
Found at i:7955380 original size:18 final size:19
Alignment explanation
Indices: 7955331--7955382 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 19
7955321 TCATTTAATA
7955331 TTTTTAATATATTTAATAGTT
1 TTTTTAAT-T-TTTAATAGTT
7955352 TATATTT-ATTTTTAATA-TT
1 T-T-TTTAATTTTTAATAGTT
7955371 TTTTTAATTTTT
1 TTTTTAATTTTT
7955383 TAGAATTACT
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
17 3 0.11
18 7 0.25
19 3 0.11
20 7 0.25
21 2 0.07
22 3 0.11
23 3 0.11
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (19 bp):
TTTTTAATTTTTAATAGTT
Found at i:7955932 original size:31 final size:31
Alignment explanation
Indices: 7955896--7955959 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 31
7955886 AAATGATAAT
*
7955896 TGAATT-GTTCGAAAGTTTTCATTTAAATCAC
1 TGAATTAGTTC-AAAATTTTCATTTAAATCAC
* * *
7955927 TGAATTATTTCAAAATTTTTATTTAAGTCAC
1 TGAATTAGTTCAAAATTTTCATTTAAATCAC
7955958 TG
1 TG
7955960 GACTATTTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
31 25 0.89
32 3 0.11
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.45
Consensus pattern (31 bp):
TGAATTAGTTCAAAATTTTCATTTAAATCAC
Found at i:7957970 original size:24 final size:25
Alignment explanation
Indices: 7957926--7957973 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
7957916 AAATTAATTT
7957926 ATTTATAAAATAATAAAAAATTAGC
1 ATTTATAAAATAATAAAAAATTAGC
*
7957951 ATTT-TAAAAGTAAT-ATAAATTAG
1 ATTTATAAAA-TAATAAAAAATTAG
7957974 AAATAAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.56, C:0.02, G:0.06, T:0.35
Consensus pattern (25 bp):
ATTTATAAAATAATAAAAAATTAGC
Found at i:7959253 original size:20 final size:19
Alignment explanation
Indices: 7959225--7959282 Score: 55
Period size: 19 Copynumber: 2.9 Consensus size: 19
7959215 AAAATGATAA
*
7959225 AATCTAGTTAAAATGGTTTC
1 AATCAAGTTAAAAT-GTTTC
*
7959245 AATTAAGTTAAACAT-TTTC
1 AATCAAGTTAAA-ATGTTTC
*
7959264 AATCATGTTAAAATTGTTT
1 AATCAAGTTAAAA-TGTTT
7959283 TTTAAACAAG
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
18 1 0.03
19 15 0.48
20 13 0.42
21 2 0.06
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.43
Consensus pattern (19 bp):
AATCAAGTTAAAATGTTTC
Found at i:7959825 original size:30 final size:30
Alignment explanation
Indices: 7959787--7959857 Score: 83
Period size: 30 Copynumber: 2.4 Consensus size: 30
7959777 TTGATTTGTC
7959787 AATA-ATAATTAATAACAAGTA-AAATATAA
1 AATATATAATTAATAACAAGTAGAAATA-AA
* *
7959816 AATATATAATTAATACCAATTAGAAATAAA
1 AATATATAATTAATAACAAGTAGAAATAAA
* *
7959846 TATATATTATTA
1 AATATATAATTA
7959858 CATTTATCAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
29 4 0.11
30 27 0.75
31 5 0.14
ACGTcount: A:0.59, C:0.04, G:0.03, T:0.34
Consensus pattern (30 bp):
AATATATAATTAATAACAAGTAGAAATAAA
Found at i:7961861 original size:19 final size:19
Alignment explanation
Indices: 7961829--7961892 Score: 83
Period size: 20 Copynumber: 3.3 Consensus size: 19
7961819 AATATTATTA
*
7961829 TTTTAGAAATTTTTTTAATT
1 TTTTAG-AATTTTTATAATT
* *
7961849 TTTTATATATTTTTAGAATT
1 TTTTAGA-ATTTTTATAATT
7961869 TTTTAGAATTTTTATAATT
1 TTTTAGAATTTTTATAATT
7961888 TTTTA
1 TTTTA
7961893 AAATATATTT
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
19 17 0.45
20 21 0.55
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.66
Consensus pattern (19 bp):
TTTTAGAATTTTTATAATT
Found at i:7967764 original size:24 final size:27
Alignment explanation
Indices: 7967715--7967770 Score: 82
Period size: 24 Copynumber: 2.2 Consensus size: 27
7967705 GTTTATGAAT
7967715 TAAAATTAAGTAAAATATATTGAAATG
1 TAAAATTAAGTAAAATATATTGAAATG
*
7967742 TAAAATTAA-TAATAT-TATT-AAATG
1 TAAAATTAAGTAAAATATATTGAAATG
7967766 TAAAA
1 TAAAA
7967771 ACATAAGCTA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 10 0.36
25 4 0.14
26 5 0.18
27 9 0.32
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (27 bp):
TAAAATTAAGTAAAATATATTGAAATG
Found at i:7978966 original size:32 final size:31
Alignment explanation
Indices: 7978930--7979002 Score: 76
Period size: 32 Copynumber: 2.3 Consensus size: 31
7978920 TTATTTGATT
*
7978930 AATTTTAGTTATTATATTTTTTTGAATTG-GTA
1 AATTTTAGTTATTATACTTTTTT-AATTGTG-A
* * * *
7978962 AATTTTAATTTTTGTACTTTTTTAATTTTGA
1 AATTTTAGTTATTATACTTTTTTAATTGTGA
7978993 AATTTTAGTT
1 AATTTTAGTT
7979003 TTAGCCCAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
31 14 0.41
32 20 0.59
ACGTcount: A:0.27, C:0.01, G:0.10, T:0.62
Consensus pattern (31 bp):
AATTTTAGTTATTATACTTTTTTAATTGTGA
Found at i:7984378 original size:21 final size:21
Alignment explanation
Indices: 7984341--7984380 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
7984331 TATTCAATTT
*
7984341 AAATAAAATAAATTATTTAAA
1 AAATAAAATAAAATATTTAAA
7984362 AAATAAAA-ACAAATATTTA
1 AAATAAAATA-AAATATTTA
7984381 TGTAATTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (21 bp):
AAATAAAATAAAATATTTAAA
Found at i:7989129 original size:15 final size:15
Alignment explanation
Indices: 7989099--7989145 Score: 55
Period size: 14 Copynumber: 3.3 Consensus size: 15
7989089 TTTTTATCTT
*
7989099 AAATTTCGAA-CTCA
1 AAATTTTGAATCTCA
7989113 AAATTTTGAATCTC-
1 AAATTTTGAATCTCA
*
7989127 AAACTTTGAATCT-A
1 AAATTTTGAATCTCA
7989141 AAATT
1 AAATT
7989146 CTAACTCTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 25 0.89
15 3 0.11
ACGTcount: A:0.43, C:0.15, G:0.06, T:0.36
Consensus pattern (15 bp):
AAATTTTGAATCTCA
Found at i:7998165 original size:16 final size:17
Alignment explanation
Indices: 7998123--7998165 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
7998113 TAGAGTAACA
7998123 AAAATATATTGAAATTT
1 AAAATATATTGAAATTT
* *
7998140 ATAATGTATT-AAATTT
1 AAAATATATTGAAATTT
*
7998156 AAAATTTATT
1 AAAATATATT
7998166 TTATTTTATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.47
Consensus pattern (17 bp):
AAAATATATTGAAATTT
Found at i:7998170 original size:5 final size:5
Alignment explanation
Indices: 7998160--7998184 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
7998150 AAATTTAAAA
7998160 TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT
7998185 ATTTTTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:8006474 original size:14 final size:14
Alignment explanation
Indices: 8006455--8006481 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8006445 TCGAGGTATT
8006455 TTCAAATTCTGTTA
1 TTCAAATTCTGTTA
8006469 TTCAAATTCTGTT
1 TTCAAATTCTGTT
8006482 TTTAATTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.15, G:0.07, T:0.52
Consensus pattern (14 bp):
TTCAAATTCTGTTA
Found at i:8006676 original size:69 final size:70
Alignment explanation
Indices: 8006488--8006695 Score: 220
Period size: 74 Copynumber: 2.9 Consensus size: 70
8006478 TGTTTTTAAT
* ** * *
8006488 TTTTACTGTCCTAAAACCAACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTA
1 TTTTA-TGTCC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTA
* *
8006553 TTTTTAA
64 ATTTCAA
* * * *
8006560 TTCTTGTTGTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGG
1 TT-TT-ATG--TCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG
8006625 TAATTTCAA
62 TAATTTCAA
* ** *
8006634 -TTTATGTCCAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTA
1 TTTTATGTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTA
8006696 TTTTTAGTTT
Statistics
Matches: 113, Mismatches: 19, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
69 49 0.43
71 2 0.02
72 4 0.04
73 5 0.04
74 51 0.45
75 2 0.02
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (70 bp):
TTTTATGTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGGTAAT
TTCAA
Found at i:8006707 original size:69 final size:69
Alignment explanation
Indices: 8006480--8006709 Score: 244
Period size: 69 Copynumber: 3.2 Consensus size: 69
8006470 TCAAATTCTG
* ** *
8006480 TTTTTAATTTTTACTGTCCTAAAACCAACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACG
1 TTTTTAA--TTTA-TGTCC-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
8006545 CTGAGGTA
62 CTGAGGTA
* * * *
8006553 TTTTTAATTCTTGTTGTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
1 TTTTTAA-T-TT-ATG--TCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
8006618 GTTGAGGTA
61 GCTGAGGTA
* * * * *
8006627 ATTTCAATTTATGTCCAAAATCAACTCACATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGA
1 TTTTTAATTTATGTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
8006692 GGTA
66 GGTA
*
8006696 TTTTTAGTTTATGT
1 TTTTTAATTTATGT
8006710 TTAGAAAGTT
Statistics
Matches: 131, Mismatches: 22, Indels: 12
0.79 0.13 0.07
Matches are distributed among these distances:
69 60 0.46
71 2 0.02
72 4 0.03
73 12 0.09
74 51 0.39
75 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (69 bp):
TTTTTAATTTATGTCCAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGA
GGTA
Found at i:8006855 original size:74 final size:74
Alignment explanation
Indices: 8006768--8006907 Score: 219
Period size: 74 Copynumber: 1.9 Consensus size: 74
8006758 TTGTTTTTCA
* * *
8006768 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTGGCTCACGTG-CTGAGCTATTTTCAAAT
1 AAAATCAACTCATATTGCAAGAGATGAGTTGAGCCTCGGCTCACATGTC-GAGCTATTTTCAAAT
8006832 TCCGTTCGTC
65 TCCGTTCGTC
* *
8006842 AAAATCAACTCATATTGCAAGAGATGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAATT
1 AAAATCAACTCATATTGCAAGAGATGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAATT
8006907 C
66 C
8006908 TATTATTCAA
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
74 59 0.98
75 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (74 bp):
AAAATCAACTCATATTGCAAGAGATGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAATT
CCGTTCGTC
Found at i:8007016 original size:14 final size:14
Alignment explanation
Indices: 8006997--8007031 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
8006987 CGCTGAGGTA
* *
8006997 TTTTCAATTTCTGC
1 TTTTCAATTCCTAC
8007011 TTTTCAATTCCTAC
1 TTTTCAATTCCTAC
8007025 TTTTCAA
1 TTTTCAA
8007032 AAAATCAGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.20, C:0.23, G:0.03, T:0.54
Consensus pattern (14 bp):
TTTTCAATTCCTAC
Found at i:8007313 original size:72 final size:72
Alignment explanation
Indices: 8007160--8007311 Score: 175
Period size: 72 Copynumber: 2.1 Consensus size: 72
8007150 AATTTCTACT
* * * * * *
8007160 TTTTTAAAA-TCAGCTCATATTGCGAAAGGTGAGTTGAGCCTCAGGTCACGTTGAGGTCATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAAAGATGAGTTGAGCCTCAAGACACATTGAGGTCATTTCA
**
8007224 ATTTCTG
66 AAATCTG
*
8007231 TTTTCAAAATTCAACTCATATTGCGAGAA-ATGAGTTGAGCCTCAAGACTCATTGAGGT-ATTTT
1 TTTTCAAAATTCAACTCATATTGCGA-AAGATGAGTTGAGCCTCAAGACACATTGAGGTCA-TTT
8007294 CAAAATCTG
64 CAAAATCTG
8007303 CTTTTCAAA
1 -TTTTCAAA
8007312 TTAAGTTTCA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
71 9 0.13
72 49 0.72
73 10 0.15
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (72 bp):
TTTTCAAAATTCAACTCATATTGCGAAAGATGAGTTGAGCCTCAAGACACATTGAGGTCATTTCA
AAATCTG
Found at i:8009230 original size:3 final size:3
Alignment explanation
Indices: 8009222--8009258 Score: 56
Period size: 3 Copynumber: 12.0 Consensus size: 3
8009212 TGTATTTTCA
*
8009222 TAT TAT TAT TAT TAT TAT TAT TAT ATAT TTT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
8009259 ATGCATATAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:8022147 original size:14 final size:14
Alignment explanation
Indices: 8022128--8022154 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8022118 TCGAGGTATT
8022128 TTCAAATTCTGTTA
1 TTCAAATTCTGTTA
8022142 TTCAAATTCTGTT
1 TTCAAATTCTGTT
8022155 TTTAATTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.15, G:0.07, T:0.52
Consensus pattern (14 bp):
TTCAAATTCTGTTA
Found at i:8022268 original size:74 final size:69
Alignment explanation
Indices: 8022173--8022382 Score: 231
Period size: 69 Copynumber: 3.0 Consensus size: 69
8022163 TTACTGTCCT
* ** *
8022173 AAAACCAACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACGCTGAGGTATTTTTAATTCTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAA-T-TT
*
8022238 GTTGTTTCA
64 -ATG--TCA
* * * * *
8022247 AAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAATTTAT
*
8022312 GTCC
66 GTCA
* * * * *
8022316 AAAATCAACTCACATTGCGAAAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTTAGTTTAT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAATTTAT
8022381 GT
66 GT
8022383 TTAGAAAGTT
Statistics
Matches: 115, Mismatches: 21, Indels: 5
0.82 0.15 0.04
Matches are distributed among these distances:
69 59 0.51
71 2 0.02
72 2 0.02
73 1 0.01
74 51 0.44
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (69 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAATTTAT
GTCA
Found at i:8022366 original size:69 final size:69
Alignment explanation
Indices: 8022153--8022422 Score: 218
Period size: 69 Copynumber: 3.8 Consensus size: 69
8022143 TCAAATTCTG
* * * * *
8022153 TTTTTAATTTTTACTGTCCTAAAACCAACTCATATTGCGAGAGGTGAGTCAAGCCTCAGGTCACG
1 TTTTTAA--TTTA-TGTCC-AAAATCAACTCACATTGCGAAAGGTGAGTTAAGCCTCAGGACACG
8022218 CTGAGGTA
62 CTGAGGTA
* * * * * * *
8022226 TTTTTAATTCTTGTTGTTTCAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
1 TTTTTAA-T-TT-ATG--TCCAAAATCAACTCACATTGCGAAAGGTGAGTTAAGCCTCAGGACAC
*
8022291 GTTGAGGTA
61 GCTGAGGTA
* * * * *
8022300 ATTTCAATTTATGTCCAAAATCAACTCACATTGCGAAAGGTGAGTTGAGCCTCGGGGCACGCTGA
1 TTTTTAATTTATGTCCAAAATCAACTCACATTGCGAAAGGTGAGTTAAGCCTCAGGACACGCTGA
8022365 GGTA
66 GGTA
* ** **
8022369 TTTTTAGTTTATGTTTAGAAAGTTGACTCATC-TTGCGAAAGGTGAGTTAAGCCT
1 TTTTTAATTTATGTCCA-AAA-TCAACTCA-CATTGCGAAAGGTGAGTTAAGCCT
8022423 TTTAATTTTT
Statistics
Matches: 162, Mismatches: 28, Indels: 16
0.79 0.14 0.08
Matches are distributed among these distances:
69 60 0.37
70 3 0.02
71 29 0.18
72 5 0.03
73 12 0.07
74 51 0.31
75 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (69 bp):
TTTTTAATTTATGTCCAAAATCAACTCACATTGCGAAAGGTGAGTTAAGCCTCAGGACACGCTGA
GGTA
Found at i:8022528 original size:74 final size:74
Alignment explanation
Indices: 8022441--8022580 Score: 219
Period size: 74 Copynumber: 1.9 Consensus size: 74
8022431 TTGTTTTTCA
* * *
8022441 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTGGCTCACGTG-CTGAGCTATTTTCAAAT
1 AAAATCAACTCATATTGCAAGAGATGAGTTGAGCCTCGGCTCACATGTC-GAGCTATTTTCAAAT
8022505 TCCGTTCGTC
65 TCCGTTCGTC
* *
8022515 AAAATCAACTCATATTGCAAGAGATGAGTTGAGCCTCGGGTCACATGTCGAGGTATTTTCAAATT
1 AAAATCAACTCATATTGCAAGAGATGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAATT
8022580 C
66 C
8022581 TATTATTCAA
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
74 59 0.98
75 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (74 bp):
AAAATCAACTCATATTGCAAGAGATGAGTTGAGCCTCGGCTCACATGTCGAGCTATTTTCAAATT
CCGTTCGTC
Found at i:8022689 original size:14 final size:14
Alignment explanation
Indices: 8022670--8022704 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
8022660 CGCTGAGGTA
* *
8022670 TTTTCAATTTCTGC
1 TTTTCAATTCCTAC
8022684 TTTTCAATTCCTAC
1 TTTTCAATTCCTAC
8022698 TTTTCAA
1 TTTTCAA
8022705 AAAATCAGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.20, C:0.23, G:0.03, T:0.54
Consensus pattern (14 bp):
TTTTCAATTCCTAC
Found at i:8022986 original size:72 final size:72
Alignment explanation
Indices: 8022833--8022984 Score: 175
Period size: 72 Copynumber: 2.1 Consensus size: 72
8022823 AATTTCTACT
* * * * * *
8022833 TTTTTAAAA-TCAGCTCATATTGCGAAAGGTGAGTTGAGCCTCAGGTCACGTTGAGGTCATTTCA
1 TTTTCAAAATTCAACTCATATTGCGAAAGATGAGTTGAGCCTCAAGACACATTGAGGTCATTTCA
**
8022897 ATTTCTG
66 AAATCTG
*
8022904 TTTTCAAAATTCAACTCATATTGCGAGAA-ATGAGTTGAGCCTCAAGACTCATTGAGGT-ATTTT
1 TTTTCAAAATTCAACTCATATTGCGA-AAGATGAGTTGAGCCTCAAGACACATTGAGGTCA-TTT
8022967 CAAAATCTG
64 CAAAATCTG
8022976 CTTTTCAAA
1 -TTTTCAAA
8022985 TTAAGTTTCA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
71 9 0.13
72 49 0.72
73 10 0.15
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (72 bp):
TTTTCAAAATTCAACTCATATTGCGAAAGATGAGTTGAGCCTCAAGACACATTGAGGTCATTTCA
AAATCTG
Found at i:8024921 original size:3 final size:3
Alignment explanation
Indices: 8024913--8024955 Score: 68
Period size: 3 Copynumber: 14.0 Consensus size: 3
8024903 TGTATTTTCA
*
8024913 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT ATAT TTT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
8024956 ATGCATATAC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 34 0.92
4 3 0.08
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:8033242 original size:10 final size:10
Alignment explanation
Indices: 8033227--8033252 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
8033217 CATGTTTGAA
8033227 ATTCAACATG
1 ATTCAACATG
8033237 ATTCAACATG
1 ATTCAACATG
8033247 ATTCAA
1 ATTCAA
8033253 TATATTGATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (10 bp):
ATTCAACATG
Found at i:8038743 original size:21 final size:22
Alignment explanation
Indices: 8038714--8038760 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
8038704 CAGAAGGAGT
*
8038714 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
8038736 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
8038757 GAGT
1 GAGT
8038761 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:8050932 original size:13 final size:13
Alignment explanation
Indices: 8050916--8050940 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8050906 ATTCAAATAA
8050916 TCAATATATATAT
1 TCAATATATATAT
8050929 TCAATATATATA
1 TCAATATATATA
8050941 CCAAGTCAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44
Consensus pattern (13 bp):
TCAATATATATAT
Found at i:8051394 original size:18 final size:18
Alignment explanation
Indices: 8051371--8051405 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
8051361 CATAAAATCC
8051371 TAATTTTTTTAAAATTTT
1 TAATTTTTTTAAAATTTT
*
8051389 TAATTTTTTTACAATTT
1 TAATTTTTTTAAAATTT
8051406 AGTCCCTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (18 bp):
TAATTTTTTTAAAATTTT
Found at i:8051681 original size:17 final size:17
Alignment explanation
Indices: 8051661--8051693 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8051651 ATTCTAGCTT
8051661 TTTCTCATTTCTTTCTC
1 TTTCTCATTTCTTTCTC
*
8051678 TTTCTCTTTTCTTTCT
1 TTTCTCATTTCTTTCT
8051694 TTCCTTCTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.03, C:0.27, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTCTCATTTCTTTCTC
Found at i:8051692 original size:21 final size:21
Alignment explanation
Indices: 8051668--8051714 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 21
8051658 CTTTTTCTCA
8051668 TTTCTTTCTCTTTCTCT-TTTC-
1 TTTCTTTC-C-TTCTCTGTTTCG
8051689 TTTCTTTCCTTCTCTGTTTCG
1 TTTCTTTCCTTCTCTGTTTCG
8051710 TTTCT
1 TTTCT
8051715 GCTTTGACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 5 0.21
21 13 0.54
ACGTcount: A:0.00, C:0.28, G:0.04, T:0.68
Consensus pattern (21 bp):
TTTCTTTCCTTCTCTGTTTCG
Found at i:8051775 original size:5 final size:5
Alignment explanation
Indices: 8051765--8051796 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
8051755 TTTATAAATG
8051765 TAATA TAATA TAATA TAATA TAATA TAATA TA
1 TAATA TAATA TAATA TAATA TAATA TAATA TA
8051797 TATTTATACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TAATA
Found at i:8053581 original size:33 final size:32
Alignment explanation
Indices: 8053534--8053596 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 32
8053524 ACAATTGTAA
*
8053534 TATTTTATTTAAATT-AGTAGATATTTATTATT
1 TATTTTATTAAAATTAAG-AGATATTTATTATT
8053566 TATTATTATTAAAATTAAGAGATATTTATTA
1 TATT-TTATTAAAATTAAGAGATATTTATTA
8053597 ATTAAATAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 4 0.14
33 22 0.79
34 2 0.07
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (32 bp):
TATTTTATTAAAATTAAGAGATATTTATTATT
Found at i:8053787 original size:22 final size:22
Alignment explanation
Indices: 8053761--8053824 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 22
8053751 TATAAATTAA
*
8053761 ATAAAGTAAAAAGAAATAAAGC
1 ATAAAGTAAAAAGAAACAAAGC
* * *
8053783 ATAAAATAAATAGAAACAAAAC
1 ATAAAGTAAAAAGAAACAAAGC
*
8053805 A-AAAG-AAAAAGGAAAGAAAG
1 ATAAAGTAAAAA-GAAACAAAG
8053825 TAGAGAAGCA
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
20 4 0.12
21 10 0.30
22 19 0.58
ACGTcount: A:0.72, C:0.05, G:0.14, T:0.09
Consensus pattern (22 bp):
ATAAAGTAAAAAGAAACAAAGC
Found at i:8053990 original size:11 final size:11
Alignment explanation
Indices: 8053974--8054004 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
8053964 ACAAAGTTTT
8053974 GTTGAAATTAA
1 GTTGAAATTAA
8053985 GTTGAAATTAA
1 GTTGAAATTAA
8053996 GTTGAAATT
1 GTTGAAATT
8054005 TTGAAATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39
Consensus pattern (11 bp):
GTTGAAATTAA
Found at i:8054922 original size:39 final size:40
Alignment explanation
Indices: 8054879--8054975 Score: 97
Period size: 45 Copynumber: 2.3 Consensus size: 40
8054869 TGCCGACTAC
* *
8054879 TGTTACTGTTACTT-ATTCGACACTTTGTGTGTCGAATAA
1 TGTTACTGTTACTTAATACAACACTTTGTGTGTCGAATAA
* * *
8054918 TGTTACTATTACTGTTACAGATACAACACTTTGTGTGTTGAATAT
1 TGTTACTGTTAC--TT--A-ATACAACACTTTGTGTGTCGAATAA
8054963 TGTTACTGTTACT
1 TGTTACTGTTACT
8054976 GTTACTGCTA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
39 11 0.24
41 2 0.04
43 1 0.02
45 32 0.70
ACGTcount: A:0.25, C:0.14, G:0.16, T:0.44
Consensus pattern (40 bp):
TGTTACTGTTACTTAATACAACACTTTGTGTGTCGAATAA
Found at i:8058705 original size:14 final size:14
Alignment explanation
Indices: 8058686--8058750 Score: 53
Period size: 14 Copynumber: 4.5 Consensus size: 14
8058676 GTAATAAATA
*
8058686 TATTAATCTTAATT
1 TATTAATTTTAATT
*
8058700 TATTAATTTTAA-C
1 TATTAATTTTAATT
8058713 TACTCTAATTTTCAATT
1 TA-T-TAATTTT-AATT
*
8058730 AATTAA-TTTAATT
1 TATTAATTTTAATT
8058743 TAATTAAT
1 T-ATTAAT
8058751 ATATTTTTAC
Statistics
Matches: 40, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
13 6 0.15
14 20 0.50
15 10 0.25
16 3 0.08
17 1 0.03
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (14 bp):
TATTAATTTTAATT
Found at i:8059182 original size:14 final size:16
Alignment explanation
Indices: 8059165--8059196 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8059155 TTTTAAACTC
8059165 TTAA-TTTAA-ATTTA
1 TTAATTTTAATATTTA
8059179 TTAATTTTAATATTTA
1 TTAATTTTAATATTTA
8059195 TT
1 TT
8059197 TTAAAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.25
15 5 0.31
16 7 0.44
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTAATTTTAATATTTA
Found at i:8059414 original size:24 final size:25
Alignment explanation
Indices: 8059378--8059425 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
8059368 AAATTAGTTT
8059378 TAATATTTATCATAAAAATAAATAA
1 TAATATTTATCATAAAAATAAATAA
* * *
8059403 TAAT-TTTTTCATATAGATAAATA
1 TAATATTTATCATAAAAATAAATA
8059426 TTATTTATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (25 bp):
TAATATTTATCATAAAAATAAATAA
Found at i:8062191 original size:220 final size:214
Alignment explanation
Indices: 8061689--8062453 Score: 745
Period size: 220 Copynumber: 3.5 Consensus size: 214
8061679 ACTCAAATTG
* * * *
8061689 TATTACCAGGGAAAACAAAAGAATAAATAAAAGTAGCTTGCCAACTGAA-TTTAACAATTTATTG
1 TATTACCAGGAAAAAAAAAAGAATAAATAACA-TAGCTTGCCAACTGAATTTTAACATTTTATTG
* * * * **
8061753 ATCAAGTTCATGGTTCAGAGTATGACATCGGTGCTTTATGCGTTGAT-CTT--GGTCCTT-ACTG
65 ATCAGGTTCATGGTTCAGAGTCT-ACATCGATGCTTTATGCGTTG-TCCTTACTGAACTTAAC--
* * ** * *
8061814 AGCAGTTATGTGTTGATACGAGAGAGA-GCATTGTTGAGATTACCTGGGAGGCAATAAG-----G
126 AGCTGTTATGTGTTGATACGAGAGA-ATGAATCCTTAAGATTACCTGGGAGGGAATAAGATTAAG
* * * * *
8061873 TTTAGGCAAAATGGTACTCGAATTG
190 TTTAAGCAAAATGATACCCGGATTA
** * * * *
8061898 TATTAATAGGGAAAAGAGAAGAATAAATAAACATAGCTTGCCAACTGAATTTT-ACAATTTATTG
1 TATTACCAGGAAAAAAAAAAGAATAAAT-AACATAGCTTGCCAACTGAATTTTAACATTTTATTG
*
8061962 ATCAGGTTCATGGTTCAGAGTACTACATCGATGCTTTAT-CGGTTAGTCCTTACTGAATTTAACA
65 ATCAGGTTCATGGTTCAGAGT-CTACATCGATGCTTTATGC-GTT-GTCCTTACTGAACTTAACA
* * *
8062026 GCTGTTATGTGTTGATGCGAGAGAATGCATCCTTAAGATTACCTGGCGGGGGAGA-AA-ATTAAG
127 GCTGTTATGTGTTGATACGAGAGAATGAATCCTTAAGATTACCTGG-GAGGGA-ATAAGATTAAG
*
8062089 TTTAAGCAAAATGATACCTGGATTA
190 TTTAAGCAAAATGATACCCGGATTA
8062114 TATTACCAGGAAAAGAAAAAAATAGAATAAATGAACATAGCTTGCCAACTGAATTTTAACATTTT
1 TATTACCAGG--AA-AAAAAAA-AGAATAAAT-AACATAGCTTGCCAACTGAATTTTAACATTTT
* * * *
8062179 ATTG-GCAGGTTCATGGTTCAGAGTCTGACATCTATGCTTTATGCATTGTTCCTTACTGAACTTG
61 ATTGATCAGGTTCATGGTTCAGAGTCT-ACATCGATGCTTTATGCGTTG-TCCTTACTGAACTTA
* * * *
8062243 GCAGCTGTTATGTGTTGATACGAGAGAGTGAATCCTTAAGGTTACCTGGGAGGGAATTAAGTTTT
124 ACAGCTGTTATGTGTTGATACGAGAGAATGAATCCTTAAGATTACCTGGGAGGGAA-TAAG-ATT
* *
8062308 AAGTTTAGGCAAAATGATACCCGGATTG
187 AAGTTTAAGCAAAATGATACCCGGATTA
* * * ** *
8062336 TATTTCCAGGAAAAAAACAAGAATAAATAAGCATA-CTTACTGACTGAATTGTAACATTTTATTG
1 TATTACCAGGAAAAAAAAAAGAATAAATAA-CATAGCTTGCCAACTGAATTTTAACATTTTATTG
* *
8062400 ATCAGGTTCATGGTTCAGAGTCAGACATCGATGCTTTATGTGTTGGTCCTTACT
65 ATCAGGTTCATGGTTCAGAGTC-TACATCGATGCTTTATGCGTT-GTCCTTACT
8062454 TTGCCACCAT
Statistics
Matches: 465, Mismatches: 58, Indels: 57
0.80 0.10 0.10
Matches are distributed among these distances:
208 1 0.00
209 89 0.19
210 12 0.03
211 40 0.09
212 9 0.02
213 3 0.01
216 28 0.06
217 27 0.06
218 60 0.13
219 20 0.04
220 129 0.28
221 11 0.02
222 36 0.08
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.32
Consensus pattern (214 bp):
TATTACCAGGAAAAAAAAAAGAATAAATAACATAGCTTGCCAACTGAATTTTAACATTTTATTGA
TCAGGTTCATGGTTCAGAGTCTACATCGATGCTTTATGCGTTGTCCTTACTGAACTTAACAGCTG
TTATGTGTTGATACGAGAGAATGAATCCTTAAGATTACCTGGGAGGGAATAAGATTAAGTTTAAG
CAAAATGATACCCGGATTA
Found at i:8066117 original size:16 final size:16
Alignment explanation
Indices: 8066096--8066126 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8066086 TTTTGTGTTA
*
8066096 TTTTAATATTAAATAT
1 TTTTAAAATTAAATAT
8066112 TTTTAAAATTAAATA
1 TTTTAAAATTAAATA
8066127 AAACTAATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
TTTTAAAATTAAATAT
Found at i:8066302 original size:39 final size:40
Alignment explanation
Indices: 8066259--8066364 Score: 124
Period size: 40 Copynumber: 2.7 Consensus size: 40
8066249 TGTGCATCGT
* *
8066259 ATAAAAATATAAACTAGTAATTATATAA-CCATGTATCAC
1 ATAAAAATACAAACTAGTAATTATATAACCCATGCATCAC
* * * **
8066298 ATAAAAATACAAATTAGCAATTATATAACCCGTGCATCGT
1 ATAAAAATACAAACTAGTAATTATATAACCCATGCATCAC
* *
8066338 ACAAAAATACAAACTAGTAACTATATA
1 ATAAAAATACAAACTAGTAATTATATA
8066365 TCTTTTCACT
Statistics
Matches: 55, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
39 25 0.45
40 30 0.55
ACGTcount: A:0.51, C:0.15, G:0.07, T:0.27
Consensus pattern (40 bp):
ATAAAAATACAAACTAGTAATTATATAACCCATGCATCAC
Found at i:8066363 original size:40 final size:39
Alignment explanation
Indices: 8066250--8066364 Score: 140
Period size: 39 Copynumber: 2.9 Consensus size: 39
8066240 CAAGTGACCT
*
8066250 GTGCATCGTATAAAAATATAAACTAGTAATTATATAACC
1 GTGCATCGTATAAAAATACAAACTAGTAATTATATAACC
* * ** * *
8066289 ATGTATCACATAAAAATACAAATTAGCAATTATATAACCC
1 GTGCATCGTATAAAAATACAAACTAGTAATTATATAA-CC
* *
8066329 GTGCATCGTACAAAAATACAAACTAGTAACTATATA
1 GTGCATCGTATAAAAATACAAACTAGTAATTATATA
8066365 TCTTTTCACT
Statistics
Matches: 60, Mismatches: 15, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
39 30 0.50
40 30 0.50
ACGTcount: A:0.48, C:0.16, G:0.09, T:0.28
Consensus pattern (39 bp):
GTGCATCGTATAAAAATACAAACTAGTAATTATATAACC
Found at i:8076939 original size:19 final size:19
Alignment explanation
Indices: 8076884--8076939 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
8076874 TACGTTCCAA
* *
8076884 GATGCACTTCGTGTGCAAG
1 GATGCACTTCATGTGCCAG
* *
8076903 GATGCGCTTCATGCGCCAG
1 GATGCACTTCATGTGCCAG
* *
8076922 TATGCACTTCACGTGCCA
1 GATGCACTTCATGTGCCA
8076940 ATCTCCCTTA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.20, C:0.29, G:0.27, T:0.25
Consensus pattern (19 bp):
GATGCACTTCATGTGCCAG
Found at i:8081108 original size:31 final size:31
Alignment explanation
Indices: 8081070--8081131 Score: 90
Period size: 31 Copynumber: 2.0 Consensus size: 31
8081060 AAAATGCACG
* *
8081070 CAATTGAATCAAAGTTAAAA-TTTCATGTGTA
1 CAATTGAATCAAA-ATAAAAGTTTCATATGTA
8081101 CAATTGAATCAAAATAAAAGTTTCATATGTA
1 CAATTGAATCAAAATAAAAGTTTCATATGTA
8081132 TAGTTACACC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 5 0.18
31 23 0.82
ACGTcount: A:0.45, C:0.10, G:0.11, T:0.34
Consensus pattern (31 bp):
CAATTGAATCAAAATAAAAGTTTCATATGTA
Found at i:8083341 original size:6 final size:6
Alignment explanation
Indices: 8083330--8083354 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
8083320 CTAATGTAAT
8083330 GATGAA GATGAA GATGAA GATGAA G
1 GATGAA GATGAA GATGAA GATGAA G
8083355 TATATTAGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.36, T:0.16
Consensus pattern (6 bp):
GATGAA
Found at i:8085310 original size:15 final size:16
Alignment explanation
Indices: 8085292--8085349 Score: 61
Period size: 15 Copynumber: 3.8 Consensus size: 16
8085282 CATATATTCA
8085292 ATAA-ATTTAAAATAT
1 ATAATATTTAAAATAT
*
8085307 ATAATATTATTAAATAT
1 ATAATATT-TAAAATAT
*
8085324 -TAA-ATTAAAAATAT
1 ATAATATTTAAAATAT
8085338 A-AATATTTAAAA
1 ATAATATTTAAAA
8085350 AAATTAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
14 8 0.23
15 14 0.40
16 6 0.17
17 7 0.20
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
ATAATATTTAAAATAT
Found at i:8085356 original size:30 final size:31
Alignment explanation
Indices: 8085293--8085357 Score: 80
Period size: 30 Copynumber: 2.1 Consensus size: 31
8085283 ATATATTCAA
* * *
8085293 TAAATTTAAAATATATAATATTATTAAATAT
1 TAAATTAAAAATATATAATATTATAAAAAAT
8085324 TAAATTAAAAATATA-AATATT-TAAAAAAAT
1 TAAATTAAAAATATATAATATTAT-AAAAAAT
8085354 TAAA
1 TAAA
8085358 AAATAATATG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 1 0.03
30 15 0.50
31 14 0.47
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (31 bp):
TAAATTAAAAATATATAATATTATAAAAAAT
Found at i:8086202 original size:18 final size:18
Alignment explanation
Indices: 8086179--8086215 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
8086169 CGAGGAAAAC
8086179 AACAAAAAAACAAAACAA
1 AACAAAAAAACAAAACAA
* *
8086197 AACAAAACAAGAAAACAA
1 AACAAAAAAACAAAACAA
8086215 A
1 A
8086216 GTTAATGGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.81, C:0.16, G:0.03, T:0.00
Consensus pattern (18 bp):
AACAAAAAAACAAAACAA
Found at i:8089031 original size:2 final size:2
Alignment explanation
Indices: 8088987--8089020 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
8088977 GATATGTATT
*
8088987 GA GA CA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
8089021 ACAAAAGAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.47, T:0.00
Consensus pattern (2 bp):
GA
Found at i:8091117 original size:18 final size:19
Alignment explanation
Indices: 8091080--8091116 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
8091070 TTTTTAAAAA
8091080 TATAAAT-TTTGGAATTTT
1 TATAAATATTTGGAATTTT
8091098 TATAAATATTTGGAATTTT
1 TATAAATATTTGGAATTTT
8091117 AAAAATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.35, C:0.00, G:0.11, T:0.54
Consensus pattern (19 bp):
TATAAATATTTGGAATTTT
Found at i:8091126 original size:19 final size:19
Alignment explanation
Indices: 8091083--8091127 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 19
8091073 TTAAAAATAT
*
8091083 AAAT-TTTGGAATTTTTAT
1 AAATATTTGGAATTTTTAA
8091101 AAATATTTGGAA-TTTTAA
1 AAATATTTGGAATTTTTAA
8091119 AAATTATTT
1 AAA-TATTT
8091128 TGTTTTGTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 12 0.50
19 12 0.50
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (19 bp):
AAATATTTGGAATTTTTAA
Found at i:8093624 original size:25 final size:25
Alignment explanation
Indices: 8093596--8093643 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
8093586 ATTTTTAAAA
*
8093596 AATATATTTTATA-TTATTTAAATTT
1 AATAT-TTTTATATTTATTGAAATTT
*
8093621 AATATTTTTTTATTTATTGAAAT
1 AATATTTTTATATTTATTGAAAT
8093644 CTTTTGTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 6 0.30
25 14 0.70
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (25 bp):
AATATTTTTATATTTATTGAAATTT
Found at i:8101526 original size:32 final size:32
Alignment explanation
Indices: 8101490--8101556 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
8101480 CGAGTTAGAC
8101490 TTTATTTATAAACTTTAAAAAGAAGTTACAAT
1 TTTATTTATAAACTTTAAAAAGAAGTTACAAT
8101522 TTTATTTATAAACTTTAAAAAGAAGTTACAAT
1 TTTATTTATAAACTTTAAAAAGAAGTTACAAT
8101554 TTT
1 TTT
8101557 TGGATTTCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.43
Consensus pattern (32 bp):
TTTATTTATAAACTTTAAAAAGAAGTTACAAT
Found at i:8101913 original size:62 final size:62
Alignment explanation
Indices: 8101834--8101956 Score: 219
Period size: 62 Copynumber: 2.0 Consensus size: 62
8101824 TCCTGCCAGG
*
8101834 GCGGACATCTCTGCTAGCTCACATGAGTGTCATGCGACGTGTAACGCTTCGAGCAACTTCGT
1 GCGGACATCTCTACTAGCTCACATGAGTGTCATGCGACGTGTAACGCTTCGAGCAACTTCGT
* *
8101896 GCGGACATCTCTACTAGCTCGCATGAGTGTCATGCGACGTGTGACGCTTCGAGCAACTTCG
1 GCGGACATCTCTACTAGCTCACATGAGTGTCATGCGACGTGTAACGCTTCGAGCAACTTCG
8101957 CCCATGCCAC
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.25
Consensus pattern (62 bp):
GCGGACATCTCTACTAGCTCACATGAGTGTCATGCGACGTGTAACGCTTCGAGCAACTTCGT
Found at i:8102148 original size:7 final size:7
Alignment explanation
Indices: 8102138--8102172 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
8102128 TTATAAAAAT
8102138 AAAATTA
1 AAAATTA
8102145 AAAATTA
1 AAAATTA
8102152 AAAATTA
1 AAAATTA
8102159 AAAATTA
1 AAAATTA
8102166 AAAATTA
1 AAAATTA
8102173 TTACATGGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
AAAATTA
Found at i:8102164 original size:21 final size:19
Alignment explanation
Indices: 8102131--8102172 Score: 66
Period size: 21 Copynumber: 2.1 Consensus size: 19
8102121 TTTAGTTTTA
8102131 TAAAAATAAAATTAAAAAT
1 TAAAAATAAAATTAAAAAT
8102150 TAAAAATTAAAAATTAAAAAT
1 TAAAAA-T-AAAATTAAAAAT
8102171 TA
1 TA
8102173 TTACATGGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 6 0.29
20 1 0.05
21 14 0.67
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (19 bp):
TAAAAATAAAATTAAAAAT
Found at i:8106653 original size:38 final size:38
Alignment explanation
Indices: 8106600--8106790 Score: 231
Period size: 38 Copynumber: 5.0 Consensus size: 38
8106590 AGCACTTGAT
* *
8106600 ATATATCTGGGTTAAGTCCCGCAGGCTTCGTGCTGGTA
1 ATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
* *
8106638 ACATATCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTA
1 ATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
* *
8106676 ATATATCCGGGTTAAATCCCGCAGGCTTCGTACTAGTA
1 ATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
* * *
8106714 ATATATTCGGGTTAAATCCCGTAGGCTTAGTGCTGGT-
1 ATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
* * * *
8106751 ATTTGATCTGAGCTTAAAGTCCCGCAGGCTTTGTGCTGGT
1 ATAT-ATCCG-GGTTAAA-TCCCGCAGGCTTCGTGCTGGT
8106791 GACTGGATTT
Statistics
Matches: 133, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
37 3 0.02
38 105 0.79
39 6 0.05
40 19 0.14
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.31
Consensus pattern (38 bp):
ATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
Found at i:8114208 original size:38 final size:38
Alignment explanation
Indices: 8114157--8114347 Score: 265
Period size: 38 Copynumber: 5.0 Consensus size: 38
8114147 AGCACTTGAT
*
8114157 ATATATCTGGGTTAAGTCCCGCAGGCTTCGTGCTGGTA
1 ATATATCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTA
*
8114195 ATATATCCGGGTTAAGTCCCGCAGGCTTCATGCTGGTA
1 ATATATCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTA
*
8114233 ATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
1 ATATATCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTA
* * *
8114271 ATATATCCGGGTTAAATCCCGTAGGCTTAGTGCTGGTA
1 ATATATCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTA
* * * * *
8114309 TTTTATCCGAGCTTAAAGTCCCACAGGCTTTGTGCTGGT
1 ATATATCCG-GGTT-AAGTCCCGCAGGCTTCGTGCTGGT
8114348 GACTGGATTC
Statistics
Matches: 138, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
38 115 0.83
39 3 0.02
40 20 0.14
ACGTcount: A:0.20, C:0.22, G:0.26, T:0.31
Consensus pattern (38 bp):
ATATATCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTA
Found at i:8121410 original size:98 final size:98
Alignment explanation
Indices: 8121241--8121435 Score: 381
Period size: 98 Copynumber: 2.0 Consensus size: 98
8121231 TGACTATACT
8121241 TTATAATGAAACGTTATGTCCAAACATTTGAGTTTTTTTCCATAAATTTACTTTGAAGATTGTGT
1 TTATAATGAAACGTTATGTCCAAACATTTGAGTTTTTTTCCATAAATTTACTTTGAAGATTGTGT
8121306 TTCTTGGGGTCATGATAATGATAAACAATAAAC
66 TTCTTGGGGTCATGATAATGATAAACAATAAAC
8121339 TTATAATGAAACGTTATGTCCAAACATTTGAGTTTTTTTCCATAAATTTACTTTGAAGATTGTGT
1 TTATAATGAAACGTTATGTCCAAACATTTGAGTTTTTTTCCATAAATTTACTTTGAAGATTGTGT
*
8121404 TTCTTGGGGTCATGATAATGATGAACAATAAA
66 TTCTTGGGGTCATGATAATGATAAACAATAAA
8121436 TTTTTGGGAT
Statistics
Matches: 96, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 96 1.00
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.40
Consensus pattern (98 bp):
TTATAATGAAACGTTATGTCCAAACATTTGAGTTTTTTTCCATAAATTTACTTTGAAGATTGTGT
TTCTTGGGGTCATGATAATGATAAACAATAAAC
Found at i:8121827 original size:30 final size:30
Alignment explanation
Indices: 8121791--8121848 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 30
8121781 AAAGCAGTGG
*
8121791 TGAAAAGTCAGAAG-CGAAGTACGAAAAACC
1 TGAAAAGTCAGAAGTC-AAGGACGAAAAACC
8121821 TGAAAAGTCAGAAGTCAAGGACGAAAAA
1 TGAAAAGTCAGAAGTCAAGGACGAAAAA
8121849 TTCAAGAGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.52, C:0.14, G:0.24, T:0.10
Consensus pattern (30 bp):
TGAAAAGTCAGAAGTCAAGGACGAAAAACC
Found at i:8128643 original size:42 final size:43
Alignment explanation
Indices: 8128562--8128677 Score: 139
Period size: 43 Copynumber: 2.7 Consensus size: 43
8128552 TCCAAGACGT
* *
8128562 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGACAG
1 GGTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAG
* *
8128605 GGTCTTACACGAAATCAAATA-CGATGTCGA-TGTCCCAGACAT
1 GGTCTTACACGAAATCAAATATCGATG-CCACTGTCCCAGACAG
*
8128647 GGTCTTACACGTAAATCTCAA-ATCGATGCCA
1 GGTCTTACACG-AAATC-AAATATCGATGCCA
8128678 ACGTTTCAGA
Statistics
Matches: 63, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
42 27 0.43
43 29 0.46
44 7 0.11
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (43 bp):
GGTCTTACACGAAATCAAATATCGATGCCACTGTCCCAGACAG
Found at i:8133549 original size:48 final size:48
Alignment explanation
Indices: 8133495--8133727 Score: 304
Period size: 48 Copynumber: 4.9 Consensus size: 48
8133485 TATGAAGTCT
** * * *
8133495 CATATCAGTGCCGATGCCATGTCCCAGACATGGTATTACACTAGAACA
1 CATATCAACGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
* * * *
8133543 CGTATCATCGCTGATGCCATGTCCCAGACATGGTCTTACATTGGCACA
1 CATATCAACGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
* *
8133591 CATATCAACGTCGATGCCATGTCCCAGATATGGTCTTACACTGGCACA
1 CATATCAACGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
* * **
8133639 CATATCAACACTGATGCCATGTCATAGACATGGTCTTACACTGGCACA
1 CATATCAACGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
* * *
8133687 CATATCAACGTCGATGCCATGTCCCAAACATAGTCTTACAC
1 CATATCAACGCCGATGCCATGTCCCAGACATGGTCTTACAC
8133728 GGGATCTCAT
Statistics
Matches: 158, Mismatches: 27, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 158 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.25
Consensus pattern (48 bp):
CATATCAACGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCACA
Found at i:8134808 original size:125 final size:125
Alignment explanation
Indices: 8134586--8134831 Score: 429
Period size: 125 Copynumber: 2.0 Consensus size: 125
8134576 ACTCATGGGT
8134586 TTTTAAACATGAATCCTAACTCAAAATAATGGTAGAAATAGGTAAATCGAGTTACGAGGACTTCA
1 TTTTAAACATGAATCCTAACTCAAAATAATGGTAGAAATAGGTAAATCGAGTTACGAGGACTTCA
* * *
8134651 AAAATGAAAAGAACATTAAAAACGTGGCTAGGATGCAGTTACTATGGAGCTTGGAAAAAA
66 AAAATGAAAAGAACATTAAAAACGGGGCTAGGATGCACTTACTATAGAGCTTGGAAAAAA
* *
8134711 TTTTAAACATGAATCCTAGCTCAAAATAATGGTAGAAATAGGTAAATCGAGTTACGGGGACTTCA
1 TTTTAAACATGAATCCTAACTCAAAATAATGGTAGAAATAGGTAAATCGAGTTACGAGGACTTCA
* *
8134776 AAAATGTAAAGAACATTAAAAACGGGGCTAGGATGTACTTACTATAGAGCTTGGAA
66 AAAATGAAAAGAACATTAAAAACGGGGCTAGGATGCACTTACTATAGAGCTTGGAA
8134832 GCTTGACCCA
Statistics
Matches: 114, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
125 114 1.00
ACGTcount: A:0.42, C:0.12, G:0.21, T:0.25
Consensus pattern (125 bp):
TTTTAAACATGAATCCTAACTCAAAATAATGGTAGAAATAGGTAAATCGAGTTACGAGGACTTCA
AAAATGAAAAGAACATTAAAAACGGGGCTAGGATGCACTTACTATAGAGCTTGGAAAAAA
Found at i:8137051 original size:13 final size:13
Alignment explanation
Indices: 8137033--8137057 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8137023 GAAGCACGAT
8137033 TCACATGGGCGTG
1 TCACATGGGCGTG
8137046 TCACATGGGCGT
1 TCACATGGGCGT
8137058 ATCCCTGCCG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (13 bp):
TCACATGGGCGTG
Found at i:8140278 original size:6 final size:6
Alignment explanation
Indices: 8140256--8140294 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
8140246 CACCGTATCG
* * *
8140256 GTAATA GTAATA GTAACA GTAACA ATAACA GTAACA GTA
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAACA GTA
8140295 CACAAAGTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.51, C:0.10, G:0.15, T:0.23
Consensus pattern (6 bp):
GTAACA
Found at i:8141213 original size:60 final size:59
Alignment explanation
Indices: 8141090--8141223 Score: 146
Period size: 60 Copynumber: 2.2 Consensus size: 59
8141080 AAGTTAACTA
* * *
8141090 GGCCTTAGCCCATATCAGTATTAATCTGGGCCATAGCCCCTTACAGTATCAGAGTATACTG
1 GGCC-TAGCCCATAACAGTATCAATCTGGGCCATAGCCCATTACAG-ATCAGAGTATACTG
* * *
8141151 GGCCTAGCCCATAACAGTATCAATTTTGGCCATAGCCCTATTACA-AGTC-GAGATATATTG
1 GGCCTAGCCCATAACAGTATCAATCTGGGCCATAGCCC-ATTACAGA-TCAGAG-TATACTG
*
8141211 GGCCTTGCCCATA
1 GGCCTAGCCCATA
8141224 TCAACACAGT
Statistics
Matches: 63, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
59 4 0.06
60 50 0.79
61 9 0.14
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (59 bp):
GGCCTAGCCCATAACAGTATCAATCTGGGCCATAGCCCATTACAGATCAGAGTATACTG
Found at i:8141260 original size:19 final size:20
Alignment explanation
Indices: 8141217--8141262 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
8141207 ATTGGGCCTT
8141217 GCCCATATCAACACAGTTGG
1 GCCCATATCAACACAGTTGG
* *
8141237 GCCCATTTCAATACAGTT-G
1 GCCCATATCAACACAGTTGG
8141256 GCCCATA
1 GCCCATA
8141263 ACAAATCAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.24
Consensus pattern (20 bp):
GCCCATATCAACACAGTTGG
Found at i:8144386 original size:22 final size:21
Alignment explanation
Indices: 8144361--8144401 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
8144351 TCCCCTGTTC
*
8144361 TTCTCTGTTTCGTTTTCTTTGT
1 TTCTCTGTTTC-ATTTCTTTGT
*
8144383 TTCTCTTTTTCATTTCTTT
1 TTCTCTGTTTCATTTCTTT
8144402 TATTTCATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.02, C:0.20, G:0.07, T:0.71
Consensus pattern (21 bp):
TTCTCTGTTTCATTTCTTTGT
Found at i:8144497 original size:22 final size:23
Alignment explanation
Indices: 8144454--8144506 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
8144444 AACTATTATA
* *
8144454 ATATTTATTATTTATACATGTGT
1 ATATTTATTATATACACATGTGT
8144477 ATATTTATTA-ATACACATGTGT
1 ATATTTATTATATACACATGTGT
8144499 -TAATTTAT
1 AT-ATTTAT
8144507 CACCTCACAC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 1 0.04
22 16 0.59
23 10 0.37
ACGTcount: A:0.34, C:0.06, G:0.08, T:0.53
Consensus pattern (23 bp):
ATATTTATTATATACACATGTGT
Found at i:8148535 original size:15 final size:15
Alignment explanation
Indices: 8148503--8148549 Score: 69
Period size: 15 Copynumber: 3.2 Consensus size: 15
8148493 CCTGAACCTA
* *
8148503 TTTTTAGG-TAAAAA
1 TTTTTAGGATGAAAT
8148517 TTTTTAGGATGAAAT
1 TTTTTAGGATGAAAT
8148532 TTTTTAGGATGAAAT
1 TTTTTAGGATGAAAT
8148547 TTT
1 TTT
8148550 AATAGCCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
14 8 0.27
15 22 0.73
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (15 bp):
TTTTTAGGATGAAAT
Found at i:8158939 original size:16 final size:16
Alignment explanation
Indices: 8158918--8158962 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
8158908 AAGCGGGATG
8158918 AGAAAATTATTTAATT
1 AGAAAATTATTTAATT
*
8158934 AGAAAATTAATTAATT
1 AGAAAATTATTTAATT
8158950 --AAAATTAATTTAA
1 AGAAAATT-ATTTAA
8158963 CAAATAATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
14 6 0.23
15 5 0.19
16 15 0.58
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (16 bp):
AGAAAATTATTTAATT
Found at i:8162592 original size:22 final size:20
Alignment explanation
Indices: 8162551--8162592 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
8162541 CTTGTACTTA
*
8162551 AGTACATTTTGTTGCATTTT
1 AGTACATTTTATTGCATTTT
8162571 AGTACATTTTAATTAGCATTTT
1 AGTACATTTT-ATT-GCATTTT
8162593 TAATATTGCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 10 0.53
21 2 0.11
22 7 0.37
ACGTcount: A:0.26, C:0.10, G:0.12, T:0.52
Consensus pattern (20 bp):
AGTACATTTTATTGCATTTT
Found at i:8166142 original size:22 final size:23
Alignment explanation
Indices: 8166117--8166162 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
8166107 CAACCAATCC
*
8166117 AATTCA-ACATATTTTTAAGATA
1 AATTCATACATATTTATAAGATA
*
8166139 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
8166162 A
1 A
8166163 CGTCATCACA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.46, C:0.09, G:0.07, T:0.39
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:8166168 original size:23 final size:23
Alignment explanation
Indices: 8166124--8166168 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
8166114 TCCAATTCAA
* *
8166124 CATATTTTTAAGATAAATTCATG
1 CATATTTATAAGATAAAGTCATG
*
8166147 CATATTTATAAGATAACGTCAT
1 CATATTTATAAGATAAAGTCAT
8166169 CACATACCCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.40, C:0.11, G:0.09, T:0.40
Consensus pattern (23 bp):
CATATTTATAAGATAAAGTCATG
Found at i:8171671 original size:93 final size:93
Alignment explanation
Indices: 8171542--8171713 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
8171532 CGCCCATAAG
* *
8171542 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
8171607 ACGAGTTCGGATGCCTAGTTACTTCTCA
66 ACGAGTTCGGATGCCTAGTTACTTCTCA
* *
8171635 CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
8171700 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
8171714 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACTTCTCA
Found at i:8171710 original size:46 final size:46
Alignment explanation
Indices: 8171535--8171710 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
8171525 TGTAACCCGC
* * *
8171535 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
8171581 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-AC-T
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
8171630 TC-TCA-CGAACTCGGACTCAACTCAATGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
8171674 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
8171711 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 2 0.02
44 3 0.03
45 2 0.02
46 62 0.58
47 28 0.26
48 2 0.02
49 3 0.03
50 1 0.01
51 2 0.02
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:8178588 original size:27 final size:27
Alignment explanation
Indices: 8178558--8178613 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
8178548 AATACTTTTG
8178558 ATTGTTTTTATTTTTTATTTTATTCAT
1 ATTGTTTTTATTTTTTATTTTATTCAT
8178585 ATTGTTTTTATTTTTTATTTTATTCAT
1 ATTGTTTTTATTTTTTATTTTATTCAT
8178612 AT
1 AT
8178614 ATATAATCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.20, C:0.04, G:0.04, T:0.73
Consensus pattern (27 bp):
ATTGTTTTTATTTTTTATTTTATTCAT
Found at i:8180186 original size:17 final size:17
Alignment explanation
Indices: 8180164--8180199 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
8180154 ATAACTGAGG
*
8180164 ATTAAACAGGCAAATGA
1 ATTAAACAGGCAAACGA
8180181 ATTAAACAGGCAAACGA
1 ATTAAACAGGCAAACGA
8180198 AT
1 AT
8180200 AATGGTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.53, C:0.14, G:0.17, T:0.17
Consensus pattern (17 bp):
ATTAAACAGGCAAACGA
Found at i:8184461 original size:21 final size:20
Alignment explanation
Indices: 8184423--8184461 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
8184413 TCATGCTCTC
* *
8184423 TTTTTTTTTTCTTTTTAAAT
1 TTTTTTTTTTCATGTTAAAT
8184443 TTTTTTATTTTCATGTTAA
1 TTTTTT-TTTTCATGTTAA
8184462 TGAAAGCCGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.18, C:0.05, G:0.03, T:0.74
Consensus pattern (20 bp):
TTTTTTTTTTCATGTTAAAT
Found at i:8191033 original size:29 final size:31
Alignment explanation
Indices: 8190988--8191045 Score: 77
Period size: 29 Copynumber: 1.9 Consensus size: 31
8190978 GTAAATTTTA
8190988 AATTTAATCTCTCA-TTTT-TAATTTTATAT
1 AATTTAATCTCTCATTTTTATAATTTTATAT
*
8191017 AATTTAATC-CTTTATTTTTATAATTTTAT
1 AATTTAATCTC-TCATTTTTATAATTTTAT
8191046 TAGTAAATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
28 1 0.04
29 11 0.44
30 4 0.16
31 9 0.36
ACGTcount: A:0.31, C:0.09, G:0.00, T:0.60
Consensus pattern (31 bp):
AATTTAATCTCTCATTTTTATAATTTTATAT
Found at i:8193965 original size:87 final size:87
Alignment explanation
Indices: 8193864--8194127 Score: 438
Period size: 87 Copynumber: 3.0 Consensus size: 87
8193854 GGCTATGGAC
8193864 CTCTTACTTTCTGTCAATGTTAGGTTCTGACTTAGTTTCAAAATTGTCTTTAACTAAATGTTTGA
1 CTCTTACTTTCTGTCAATGTTAGGTTCTGACTTAGTTTCAAAATTGTCTTTAACTAAATGTTTGA
*
8193929 ATTATGTTTCAATACTTGAGCA
66 ACTATGTTTCAATACTTGAGCA
* * *
8193951 CTCTTACTTTCTGTCAATGTTAGGTTCTGACTTAGTTTCAAAATTGTCTTTCACTAAGTGTTTAA
1 CTCTTACTTTCTGTCAATGTTAGGTTCTGACTTAGTTTCAAAATTGTCTTTAACTAAATGTTTGA
8194016 ACTATGTTTCAATACTTGAGCA
66 ACTATGTTTCAATACTTGAGCA
* * * *
8194038 CTCTTACTTTCCGTCAATGTTAGGTTCTGACTTAGCTTCAAAATTTTCTTTAACTAAATGCTTGA
1 CTCTTACTTTCTGTCAATGTTAGGTTCTGACTTAGTTTCAAAATTGTCTTTAACTAAATGTTTGA
* *
8194103 ACTATGTTTCAGTACTTGAGAA
66 ACTATGTTTCAATACTTGAGCA
8194125 CTC
1 CTC
8194128 CAAAAGATTA
Statistics
Matches: 164, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 164 1.00
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.43
Consensus pattern (87 bp):
CTCTTACTTTCTGTCAATGTTAGGTTCTGACTTAGTTTCAAAATTGTCTTTAACTAAATGTTTGA
ACTATGTTTCAATACTTGAGCA
Found at i:8201191 original size:20 final size:20
Alignment explanation
Indices: 8201166--8201207 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
8201156 TTCGATCAAT
*
8201166 CCATCAAATAAGATCCCAAC
1 CCATCAAATAAGATCCAAAC
8201186 CCATCAAATAAGATCCAAAC
1 CCATCAAATAAGATCCAAAC
8201206 CC
1 CC
8201208 TAACAGCGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.45, C:0.36, G:0.05, T:0.14
Consensus pattern (20 bp):
CCATCAAATAAGATCCAAAC
Found at i:8202602 original size:9 final size:9
Alignment explanation
Indices: 8202592--8202624 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
8202582 CATGTGAATT
*
8202592 AATAAAATT
1 AATAAAATA
8202601 AATAAAATA
1 AATAAAATA
8202610 AAT-AAATA
1 AATAAAATA
8202618 AATAAAA
1 AATAAAA
8202625 ATTCATGTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (9 bp):
AATAAAATA
Found at i:8210803 original size:8 final size:9
Alignment explanation
Indices: 8210780--8210806 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
8210770 TTAATATAAT
8210780 TTAAAAATA
1 TTAAAAATA
8210789 TTAAAAATA
1 TTAAAAATA
8210798 TTAAAAATA
1 TTAAAAATA
8210807 ACAAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
TTAAAAATA
Found at i:8211415 original size:31 final size:33
Alignment explanation
Indices: 8211348--8211421 Score: 89
Period size: 31 Copynumber: 2.3 Consensus size: 33
8211338 TATAGTTATC
* ** *
8211348 TTAAATTTAAATAATACATATTTTATGATAATTT
1 TTAAATTT-AATAATACATATTTAAAAATAAATT
8211382 TTAAATTTAATAA-A-ATATTTAAAAATAAATT
1 TTAAATTTAATAATACATATTTAAAAATAAATT
8211413 TTAAATTTA
1 TTAAATTTA
8211422 GTTATAAAGA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
31 22 0.61
32 1 0.03
33 5 0.14
34 8 0.22
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.47
Consensus pattern (33 bp):
TTAAATTTAATAATACATATTTAAAAATAAATT
Found at i:8211528 original size:26 final size:26
Alignment explanation
Indices: 8211478--8211529 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
8211468 AATATTAAGA
*
8211478 TAAACAATATTTATCTTAATAATAAT
1 TAAACAATATTTATATTAATAATAAT
* * *
8211504 TAAATAATATTTATATTTATGATAAT
1 TAAACAATATTTATATTAATAATAAT
8211530 ATTTTTTATC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (26 bp):
TAAACAATATTTATATTAATAATAAT
Found at i:8211530 original size:18 final size:18
Alignment explanation
Indices: 8211507--8211560 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 18
8211497 TAATAATTAA
8211507 ATAATATTTATATTTATG
1 ATAATATTTATATTTATG
*
8211525 ATAATATTTTTTATCTATATG
1 ATAATA-TTTATAT-T-TATG
8211546 ATAAT-TTATATATTT
1 ATAATATT-TATATTT
8211561 TATTTTTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
18 7 0.23
19 9 0.30
20 5 0.17
21 9 0.30
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (18 bp):
ATAATATTTATATTTATG
Found at i:8211783 original size:24 final size:23
Alignment explanation
Indices: 8211739--8211801 Score: 65
Period size: 24 Copynumber: 2.7 Consensus size: 23
8211729 TATTAAAATG
* **
8211739 TATAACATTA-ATATTAATATAA
1 TATAATATTAGATATTTTTATAA
8211761 TATAATATTTAGATATTTTTATAA
1 TATAATA-TTAGATATTTTTATAA
* *
8211785 TTTTATATTAGATATTT
1 TATAATATTAGATATTT
8211802 ATAAAATAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
22 6 0.18
23 13 0.38
24 15 0.44
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (23 bp):
TATAATATTAGATATTTTTATAA
Found at i:8211854 original size:22 final size:23
Alignment explanation
Indices: 8211796--8211860 Score: 78
Period size: 25 Copynumber: 2.8 Consensus size: 23
8211786 TTTATATTAG
8211796 ATATTTATAAAATAATAAAATATT
1 ATATTTATAAAATAATAAAATA-T
* *
8211820 ATTGTTTAAAAAATAATAAAATA-
1 A-TATTTATAAAATAATAAAATAT
*
8211843 ATATATATAAAATAATAA
1 ATATTTATAAAATAATAA
8211861 GTAAGTTATC
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
22 14 0.40
23 1 0.03
24 1 0.03
25 19 0.54
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (23 bp):
ATATTTATAAAATAATAAAATAT
Found at i:8212548 original size:27 final size:25
Alignment explanation
Indices: 8212497--8212556 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 25
8212487 ATAATAAAAT
8212497 AAAAGAAAAAGAAATAGGAAAGAAA
1 AAAAGAAAAAGAAATAGGAAAGAAA
* *
8212522 GAAAGAACAAACGAAATA-GAAGGGAAA
1 AAAAGAA-AAA-GAAATAGGAA-AGAAA
8212549 AAAAGAAA
1 AAAAGAAA
8212557 GAAAAGGGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
25 6 0.21
26 7 0.24
27 16 0.55
ACGTcount: A:0.72, C:0.03, G:0.22, T:0.03
Consensus pattern (25 bp):
AAAAGAAAAAGAAATAGGAAAGAAA
Found at i:8213255 original size:24 final size:24
Alignment explanation
Indices: 8213228--8213274 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
8213218 ATTGAAATGG
8213228 ATTG-ATTTACTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
8213252 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
8213275 GGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.32, C:0.02, G:0.15, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:8218723 original size:38 final size:37
Alignment explanation
Indices: 8218598--8218726 Score: 132
Period size: 38 Copynumber: 3.4 Consensus size: 37
8218588 ATTTGGCACT
**
8218598 CAGTGCCTCATCGAATAATTTGAAGTAATAATTTGACACC
1 CAGTGCCTCATCGAATAATCCGAAGT-A-AA-TTGACACC
* ** * * *
8218638 CAGTGTCTCATCGGCTAAACCAAAGTAAATTGGCACC
1 CAGTGCCTCATCGAATAATCCGAAGTAAATTGACACC
8218675 CAGTGCCTCATCGAATTAATCCGAAGTAAATTGACACC
1 CAGTGCCTCATCGAA-TAATCCGAAGTAAATTGACACC
* *
8218713 TAGTGTCTCATCGA
1 CAGTGCCTCATCGA
8218727 CTCGAAGTAG
Statistics
Matches: 72, Mismatches: 16, Indels: 4
0.78 0.17 0.04
Matches are distributed among these distances:
37 19 0.26
38 33 0.46
39 1 0.01
40 19 0.26
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (37 bp):
CAGTGCCTCATCGAATAATCCGAAGTAAATTGACACC
Found at i:8220571 original size:20 final size:20
Alignment explanation
Indices: 8220548--8220616 Score: 66
Period size: 20 Copynumber: 3.3 Consensus size: 20
8220538 AAAAATAATT
8220548 ATAATTTAATAGAAATTATG
1 ATAATTTAATAGAAATTATG
* * *
8220568 ATAATTATACATTAAAAATAATT
1 ATAATT-TA-A-TAGAAATTATG
* *
8220591 ATAGTTTAATAGAAATTGTG
1 ATAATTTAATAGAAATTATG
8220611 ATAATT
1 ATAATT
8220617 ATACATTTAA
Statistics
Matches: 37, Mismatches: 9, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
20 18 0.49
21 3 0.08
22 3 0.08
23 13 0.35
ACGTcount: A:0.49, C:0.01, G:0.09, T:0.41
Consensus pattern (20 bp):
ATAATTTAATAGAAATTATG
Found at i:8220599 original size:43 final size:44
Alignment explanation
Indices: 8220511--8220642 Score: 207
Period size: 43 Copynumber: 3.0 Consensus size: 44
8220501 ATTAAAATAA
*
8220511 AATAGAAGTTGTGATAATTATACATTTAAAAATAATTATAATTT
1 AATAGAAATTGTGATAATTATACATTTAAAAATAATTATAATTT
* *
8220555 AATAGAAATTATGATAATTATACA-TTAAAAATAATTATAGTTT
1 AATAGAAATTGTGATAATTATACATTTAAAAATAATTATAATTT
8220598 AATAGAAATTGTGATAATTATACATTTAAAAA-AATTCA-AATTT
1 AATAGAAATTGTGATAATTATACATTTAAAAATAATT-ATAATTT
8220641 AA
1 AA
8220643 ATTACAATTA
Statistics
Matches: 81, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
43 51 0.63
44 30 0.37
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.39
Consensus pattern (44 bp):
AATAGAAATTGTGATAATTATACATTTAAAAATAATTATAATTT
Found at i:8220753 original size:12 final size:12
Alignment explanation
Indices: 8220736--8220761 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8220726 AAAAGTTGTG
8220736 ATAAATATAATT
1 ATAAATATAATT
8220748 ATAAATATAATT
1 ATAAATATAATT
8220760 AT
1 AT
8220762 TAGTTTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
ATAAATATAATT
Found at i:8220881 original size:11 final size:11
Alignment explanation
Indices: 8220844--8220881 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
8220834 AAGTATCTTG
8220844 ATTATCACTTA
1 ATTATCACTTA
8220855 ATTAT-ACTTATA
1 ATTATCAC-T-TA
8220867 ATTATCACTTA
1 ATTATCACTTA
8220878 ATTA
1 ATTA
8220882 AACGACTCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
10 2 0.08
11 12 0.50
12 8 0.33
13 2 0.08
ACGTcount: A:0.39, C:0.13, G:0.00, T:0.47
Consensus pattern (11 bp):
ATTATCACTTA
Found at i:8222206 original size:10 final size:10
Alignment explanation
Indices: 8222191--8222215 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
8222181 ATTAGGGGAA
8222191 AAAGTAAAAC
1 AAAGTAAAAC
8222201 AAAGTAAAAC
1 AAAGTAAAAC
8222211 AAAGT
1 AAAGT
8222216 GAACATGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.68, C:0.08, G:0.12, T:0.12
Consensus pattern (10 bp):
AAAGTAAAAC
Found at i:8222875 original size:25 final size:25
Alignment explanation
Indices: 8222847--8222898 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
8222837 TTTGGCTTGG
*
8222847 CATTTACTAAG-CAATATCAGATATT
1 CATTTA-TAAGACAATATCAAATATT
*
8222872 CATTTATTAGACAATATCAAATATT
1 CATTTATAAGACAATATCAAATATT
8222897 CA
1 CA
8222899 AATTATTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 3 0.12
25 21 0.88
ACGTcount: A:0.42, C:0.15, G:0.06, T:0.37
Consensus pattern (25 bp):
CATTTATAAGACAATATCAAATATT
Found at i:8230285 original size:22 final size:21
Alignment explanation
Indices: 8230236--8230285 Score: 50
Period size: 22 Copynumber: 2.3 Consensus size: 21
8230226 CCACGTCTTT
*
8230236 TTCTTTTGTTTCTTTTTCTAA
1 TTCTTTTCTTTCTTTTTCTAA
8230257 -TCATTTTCTCTTCTTTCTTC-AA
1 TTC-TTTTCT-TTCTTT-TTCTAA
8230279 TTCTTTT
1 TTCTTTT
8230286 TCAATTTCTT
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
20 2 0.08
21 5 0.21
22 12 0.50
23 5 0.21
ACGTcount: A:0.10, C:0.20, G:0.02, T:0.68
Consensus pattern (21 bp):
TTCTTTTCTTTCTTTTTCTAA
Found at i:8241713 original size:15 final size:15
Alignment explanation
Indices: 8241693--8241724 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8241683 TACCACCAAC
*
8241693 GAAGTACAGTCCCCT
1 GAAGTACAGCCCCCT
8241708 GAAGTACAGCCCCCT
1 GAAGTACAGCCCCCT
8241723 GA
1 GA
8241725 TCAAGGAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.34, G:0.22, T:0.16
Consensus pattern (15 bp):
GAAGTACAGCCCCCT
Found at i:8244010 original size:25 final size:26
Alignment explanation
Indices: 8243982--8244037 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
8243972 AATTATGAGT
8243982 GATATC-TTGACGAGAAAAGTATGTA
1 GATATCTTTGACGAGAAAAGTATGTA
*
8244007 GATATCTTTGATGAGAAAAGTATGTA
1 GATATCTTTGACGAGAAAAGTATGTA
*
8244033 CATAT
1 GATAT
8244038 TTATAGTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
25 6 0.21
26 22 0.79
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.32
Consensus pattern (26 bp):
GATATCTTTGACGAGAAAAGTATGTA
Found at i:8259188 original size:15 final size:15
Alignment explanation
Indices: 8259168--8259197 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
8259158 ATACACTAAG
8259168 GAACAACTAGAGCAT
1 GAACAACTAGAGCAT
8259183 GAACAACTAGAGCAT
1 GAACAACTAGAGCAT
8259198 CTACACAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.20, G:0.20, T:0.13
Consensus pattern (15 bp):
GAACAACTAGAGCAT
Found at i:8261482 original size:40 final size:40
Alignment explanation
Indices: 8261398--8261574 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
8261388 CGGATGATAA
* * *
8261398 CCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATAC
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * *
8261438 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
8261478 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* *
8261518 CCGGGCTAAGACCCGAGGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
8261558 CC-GGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
8261575 ATACTTGGGT
Statistics
Matches: 118, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.12
40 101 0.86
41 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:8263672 original size:25 final size:26
Alignment explanation
Indices: 8263620--8263672 Score: 74
Period size: 25 Copynumber: 2.1 Consensus size: 26
8263610 TAGGGTTAGG
*
8263620 TTTTCTTTTCATTTTTAGAGTAGGTT
1 TTTTCTTTTCATTTTTAGAGTAGATT
8263646 TTTTCTTTTC-TTTTTAG-GTTAGATT
1 TTTTCTTTTCATTTTTAGAG-TAGATT
8263671 TT
1 TT
8263673 AATTTTGTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 1 0.04
25 14 0.56
26 10 0.40
ACGTcount: A:0.13, C:0.08, G:0.13, T:0.66
Consensus pattern (26 bp):
TTTTCTTTTCATTTTTAGAGTAGATT
Found at i:8273078 original size:11 final size:11
Alignment explanation
Indices: 8273064--8273115 Score: 50
Period size: 11 Copynumber: 4.7 Consensus size: 11
8273054 ATTTGGTTGT
8273064 TGTTTTGGCAC
1 TGTTTTGGCAC
****
8273075 TGTTTCAATAC
1 TGTTTTGGCAC
* *
8273086 TATTTTGGTAC
1 TGTTTTGGCAC
8273097 TGTTTTGGCAC
1 TGTTTTGGCAC
8273108 TGTTTTGG
1 TGTTTTGG
8273116 GCTCTTCTTC
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.13, C:0.13, G:0.23, T:0.50
Consensus pattern (11 bp):
TGTTTTGGCAC
Found at i:8281383 original size:16 final size:16
Alignment explanation
Indices: 8281362--8281393 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
8281352 GCTGTAAAAG
8281362 GTATTGGAAGAGCTAA
1 GTATTGGAAGAGCTAA
8281378 GTATTGGAAGAGCTAA
1 GTATTGGAAGAGCTAA
8281394 AGTTGTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.31, T:0.25
Consensus pattern (16 bp):
GTATTGGAAGAGCTAA
Found at i:8286463 original size:19 final size:20
Alignment explanation
Indices: 8286439--8286482 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
8286429 ATACGAGCGT
*
8286439 GTGTTT-TGGACACACGGTC
1 GTGTTTGTGGACACACGGGC
*
8286458 GTGTTTGGTGGGCACACGGGC
1 GTGTTT-GTGGACACACGGGC
8286479 GTGT
1 GTGT
8286483 GAGACCCTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 6 0.29
21 15 0.71
ACGTcount: A:0.11, C:0.18, G:0.41, T:0.30
Consensus pattern (20 bp):
GTGTTTGTGGACACACGGGC
Found at i:8292733 original size:18 final size:19
Alignment explanation
Indices: 8292693--8292733 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
8292683 CAATCTCCTT
8292693 TTGAACAGTAGTCTCTCCC
1 TTGAACAGTAGTCTCTCCC
8292712 -TGAACAGTAG-CTC-CCTC
1 TTGAACAGTAGTCTCTCC-C
8292729 TTGAA
1 TTGAA
8292734 TAATGGTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
16 2 0.10
17 4 0.20
18 14 0.70
ACGTcount: A:0.24, C:0.29, G:0.17, T:0.29
Consensus pattern (19 bp):
TTGAACAGTAGTCTCTCCC
Found at i:8298499 original size:31 final size:31
Alignment explanation
Indices: 8298461--8298523 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
8298451 TGTAAAGAAG
8298461 ACTGAATTTAAATCTTTTTATTTCATAGGAA
1 ACTGAATTTAAATCTTTTTATTTCATAGGAA
8298492 ACTGAATTTAAATCTTTTTATTTCATAGGAA
1 ACTGAATTTAAATCTTTTTATTTCATAGGAA
8298523 A
1 A
8298524 ATTAAAATGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.44
Consensus pattern (31 bp):
ACTGAATTTAAATCTTTTTATTTCATAGGAA
Found at i:8305465 original size:11 final size:11
Alignment explanation
Indices: 8305449--8305479 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
8305439 ATCGTAGACC
8305449 ATAAAAATATA
1 ATAAAAATATA
8305460 ATAAAAATATA
1 ATAAAAATATA
*
8305471 ATAGAAATA
1 ATAAAAATA
8305480 AATTTTCTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (11 bp):
ATAAAAATATA
Done.