Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 290 of 295
Found at i:98195233 original size:15 final size:14
Alignment explanation
Indices: 98195209--98195244 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
98195199 TTTTTGATAC
98195209 TAATAAATAATAAA
1 TAATAAATAATAAA
*
98195223 TAATGAAATAATATA
1 TAAT-AAATAATAAA
98195238 TAATAAA
1 TAATAAA
98195245 AGGAAGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (14 bp):
TAATAAATAATAAA
Found at i:98195276 original size:10 final size:10
Alignment explanation
Indices: 98195229--98195334 Score: 58
Period size: 10 Copynumber: 10.2 Consensus size: 10
98195219 TAAATAATGA
98195229 AATAATATAT
1 AATAATATAT
* *
98195239 AATAAAAGGA-
1 AATAATA-TAT
98195249 AGATAATATAGGT
1 A-ATAATATA--T
98195262 AATAATATAT
1 AATAATATAT
98195272 AATAATATAT
1 AATAATATAT
* *
98195282 GAT-ATGTAAT
1 AATAATAT-AT
*
98195292 AA-AAAATAT
1 AATAATATAT
*
98195301 AAATAAAATAT
1 -AATAATATAT
98195312 AATGAA-ATAT
1 AAT-AATATAT
98195322 AATAATATGAT
1 AATAATAT-AT
98195333 AA
1 AA
98195335 CTGTCCTATA
Statistics
Matches: 75, Mismatches: 9, Indels: 23
0.70 0.08 0.21
Matches are distributed among these distances:
9 7 0.09
10 40 0.53
11 19 0.25
12 8 0.11
13 1 0.01
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.31
Consensus pattern (10 bp):
AATAATATAT
Found at i:98195508 original size:12 final size:12
Alignment explanation
Indices: 98195489--98195525 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
98195479 TAAAACATAT
98195489 AATGTATAATAA
1 AATGTATAATAA
*
98195501 AATTTATAAATAA
1 AATGTAT-AATAA
98195514 AATGTATAATAA
1 AATGTATAATAA
98195526 TTAAAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.35
Consensus pattern (12 bp):
AATGTATAATAA
Found at i:98195514 original size:13 final size:13
Alignment explanation
Indices: 98195489--98195522 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
98195479 TAAAACATAT
98195489 AATGTAT-AATAA
1 AATGTATAAATAA
*
98195501 AATTTATAAATAA
1 AATGTATAAATAA
98195514 AATGTATAA
1 AATGTATAA
98195523 TAATTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (13 bp):
AATGTATAAATAA
Found at i:98209316 original size:22 final size:21
Alignment explanation
Indices: 98209265--98209317 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 21
98209255 TGTAATAATT
98209265 TTTTTATTTTTAAATATTTT-
1 TTTTTATTTTTAAATATTTTA
98209285 TTTTTATATTTTATGAAT-TTTTAA
1 TTTTTAT-TTTTA--AATATTTT-A
98209309 TTTTTATTT
1 TTTTTATTT
98209318 AATTATTCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
20 7 0.25
21 5 0.18
22 4 0.14
23 5 0.18
24 7 0.25
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.74
Consensus pattern (21 bp):
TTTTTATTTTTAAATATTTTA
Found at i:98211084 original size:19 final size:20
Alignment explanation
Indices: 98211051--98211088 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
98211041 TACTTAAATC
*
98211051 AATAAAAAGAGAAAAATATA
1 AATAAAAAGACAAAAATATA
98211071 AATAAAAA-ACAAAAATAT
1 AATAAAAAGACAAAAATAT
98211089 TACCGAAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.76, C:0.03, G:0.05, T:0.16
Consensus pattern (20 bp):
AATAAAAAGACAAAAATATA
Found at i:98212285 original size:13 final size:13
Alignment explanation
Indices: 98212256--98212291 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
98212246 TTAACTCAAG
98212256 TACCCAACCC-A-
1 TACCCAACCCAAT
98212267 -ACCCAACCCAAT
1 TACCCAACCCAAT
98212279 TACCCAACCCAAT
1 TACCCAACCCAAT
98212292 CATAAAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 9 0.41
11 1 0.05
13 12 0.55
ACGTcount: A:0.39, C:0.50, G:0.00, T:0.11
Consensus pattern (13 bp):
TACCCAACCCAAT
Found at i:98212357 original size:7 final size:6
Alignment explanation
Indices: 98212316--98212356 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
98212306 ATAATTTAAT
*
98212316 AAATAA AAATAA AAATCTAA AACTAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAA--TAA AAATAA AAATAA AAATAA AAA
98212357 ACATATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:98212357 original size:20 final size:20
Alignment explanation
Indices: 98212319--98212358 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
98212309 ATTTAATAAA
**
98212319 TAAAAATAAAAATCTAAAAC
1 TAAAAATAAAAATAAAAAAC
98212339 TAAAAATAAAAATAAAAAAC
1 TAAAAATAAAAATAAAAAAC
98212359 ATATAATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.17
Consensus pattern (20 bp):
TAAAAATAAAAATAAAAAAC
Found at i:98212390 original size:9 final size:9
Alignment explanation
Indices: 98212376--98212443 Score: 100
Period size: 9 Copynumber: 7.6 Consensus size: 9
98212366 TTTATACAAA
98212376 TAATTCGGT
1 TAATTCGGT
*
98212385 TAATTCGGG
1 TAATTCGGT
98212394 TAATTCGGT
1 TAATTCGGT
* *
98212403 TAATTTGAT
1 TAATTCGGT
98212412 TAATTCGGT
1 TAATTCGGT
*
98212421 TAATTCGAT
1 TAATTCGGT
98212430 TAATTCGGT
1 TAATTCGGT
98212439 TAATT
1 TAATT
98212444 TTATACTTAT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.26, C:0.09, G:0.19, T:0.46
Consensus pattern (9 bp):
TAATTCGGT
Found at i:98212416 original size:36 final size:36
Alignment explanation
Indices: 98212376--98212444 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
98212366 TTTATACAAA
*
98212376 TAATTCGGTTAATTCGGGTAATTCGGTTAATTTGAT
1 TAATTCGGTTAATTCGAGTAATTCGGTTAATTTGAT
*
98212412 TAATTCGGTTAATTCGATTAATTCGGTTAATTT
1 TAATTCGGTTAATTCGAGTAATTCGGTTAATTT
98212445 TATACTTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.26, C:0.09, G:0.19, T:0.46
Consensus pattern (36 bp):
TAATTCGGTTAATTCGAGTAATTCGGTTAATTTGAT
Found at i:98213419 original size:15 final size:15
Alignment explanation
Indices: 98213399--98213476 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
98213389 TTTATGGAAA
98213399 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
98213414 ATCAAATA-ATGGAA
1 ATCAAAGATATGGGT
98213428 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
98213444 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
98213458 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
98213474 ATC
1 ATC
98213477 GAGATATTGG
Statistics
Matches: 47, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
14 9 0.19
15 29 0.62
16 9 0.19
ACGTcount: A:0.44, C:0.08, G:0.23, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:98213428 original size:30 final size:30
Alignment explanation
Indices: 98213392--98213476 Score: 152
Period size: 30 Copynumber: 2.8 Consensus size: 30
98213382 ATCCATATTT
*
98213392 ATGGAAAATCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
98213422 ATGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
98213452 TTGGAAAGTCAAAGATATGGGTATC
1 ATGGAAAGTCAAAGATATGGGTATC
98213477 GAGATATTGG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.45, C:0.07, G:0.24, T:0.25
Consensus pattern (30 bp):
ATGGAAAGTCAAAGATATGGGTATCAAATA
Found at i:98218080 original size:15 final size:15
Alignment explanation
Indices: 98218060--98218167 Score: 87
Period size: 15 Copynumber: 7.2 Consensus size: 15
98218050 TTTATGGAAA
98218060 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
98218075 ATCAAATA-ATGGAA
1 ATCAAAGATATGGGT
98218089 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
98218105 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
98218119 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
98218135 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
98218149 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
98218165 ATC
1 ATC
98218168 GAGATATTGG
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 13 0.19
15 43 0.62
16 13 0.19
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:98218089 original size:30 final size:30
Alignment explanation
Indices: 98218053--98218167 Score: 203
Period size: 30 Copynumber: 3.8 Consensus size: 30
98218043 ATCCATATTT
*
98218053 ATGGAAAATCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
98218083 ATGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
98218113 TTGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
98218143 TTGGAAAGTCAAAGATATGGGTATC
1 ATGGAAAGTCAAAGATATGGGTATC
98218168 GAGATATTGG
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 83 1.00
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.25
Consensus pattern (30 bp):
ATGGAAAGTCAAAGATATGGGTATCAAATA
Found at i:98219253 original size:38 final size:38
Alignment explanation
Indices: 98219195--98219278 Score: 136
Period size: 38 Copynumber: 2.3 Consensus size: 38
98219185 TTTTTTACCC
*
98219195 AAATA-AT-CCCTATATTTTATGAGATACAAGGAGGAA
1 AAATATATACCCTATATTTTATGAGATACAAGGAGAAA
*
98219231 AACTATATACCCTATATTTTATGAGATACAAGGAGAAA
1 AAATATATACCCTATATTTTATGAGATACAAGGAGAAA
98219269 AAATATATAC
1 AAATATATAC
98219279 GGGTACCATT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
36 4 0.09
37 2 0.05
38 37 0.86
ACGTcount: A:0.46, C:0.12, G:0.13, T:0.29
Consensus pattern (38 bp):
AAATATATACCCTATATTTTATGAGATACAAGGAGAAA
Found at i:98220114 original size:30 final size:30
Alignment explanation
Indices: 98220068--98220125 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
98220058 CTTTTCTAGG
*
98220068 ATTATTTTAAAAATATATATTT-AAAAATTA
1 ATTATTATAAAAATATAT-TTTCAAAAATTA
*
98220098 ATTATTATAAATATATATTTTCAAAAAT
1 ATTATTATAAAAATATATTTTCAAAAAT
98220126 GTTATTTATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 3 0.12
30 22 0.88
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (30 bp):
ATTATTATAAAAATATATTTTCAAAAATTA
Found at i:98226289 original size:16 final size:16
Alignment explanation
Indices: 98226268--98226300 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
98226258 TCAATGATCC
98226268 ATCTGGTGTTATTTTA
1 ATCTGGTGTTATTTTA
98226284 ATCTGGTGTTATTTTA
1 ATCTGGTGTTATTTTA
98226300 A
1 A
98226301 GTATTCTAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.06, G:0.18, T:0.55
Consensus pattern (16 bp):
ATCTGGTGTTATTTTA
Found at i:98229692 original size:16 final size:17
Alignment explanation
Indices: 98229661--98229693 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
98229651 TTCATAAGTA
98229661 TATATCAATCATTTCAT
1 TATATCAATCATTTCAT
98229678 TATATCAAT-ATTTCAT
1 TATATCAATCATTTCAT
98229694 GCTCCATCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.36, C:0.15, G:0.00, T:0.48
Consensus pattern (17 bp):
TATATCAATCATTTCAT
Found at i:98230039 original size:46 final size:45
Alignment explanation
Indices: 98229974--98230404 Score: 340
Period size: 46 Copynumber: 8.9 Consensus size: 45
98229964 TTATCTTTGA
* * * * *
98229974 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTGT
* ***
98230020 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TGT
* ** ** * *
98230066 TACATTGCCATGGTATCTTTCAACCATGGTCTTATTCATTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTGT
* *
98230111 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTGT
* * *
98230157 CCTGTTGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC-TGT
* *
98230203 CATGTTGCCATGGTATCTTTCAACAATGGTCTTACACATTTTATACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA--TT-T---C------TGT
* *
98230260 CCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA--TT-T---C------TGT
* * *
98230317 CCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCTGT
*
98230363 CATGTTGCCATGGTGTCTTTCAACCATGGTCTTACACATTTC
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
98230405 ATTTCAGAAA
Statistics
Matches: 337, Mismatches: 34, Indels: 29
0.84 0.09 0.07
Matches are distributed among these distances:
45 45 0.13
46 187 0.55
48 2 0.01
49 1 0.00
52 1 0.00
55 1 0.00
56 3 0.01
57 97 0.29
ACGTcount: A:0.22, C:0.23, G:0.13, T:0.41
Consensus pattern (45 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCTGT
Found at i:98230133 original size:91 final size:92
Alignment explanation
Indices: 98229979--98230243 Score: 345
Period size: 91 Copynumber: 2.9 Consensus size: 92
98229969 TTTGACATGA
* * * *
98229979 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
*** *
98230044 CATGGTCTTGTTCATTTCATGTTAC-AT
66 CATGGTCTTACACATTTCAT-ATACTAT
* * *
98230071 TGCCATGGTATCTTTCAACCATGGTCTTATTCA-TTCCCGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
* * *
98230135 CATGGTCTTACACATTTTATATCCTGT
66 CATGGTCTTACACATTTCATATACTAT
* * *
98230162 TGCCATAGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAAC
1 TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
*
98230227 AATGGTCTTACACATTT
66 CATGGTCTTACACATTT
98230244 TATACACATT
Statistics
Matches: 150, Mismatches: 21, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
90 2 0.01
91 75 0.50
92 73 0.49
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.41
Consensus pattern (92 bp):
TGCCATAGTATCTTTCAACCATGGTCTTACTCATTTCCTGTCATGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATACTAT
Found at i:98230211 original size:137 final size:141
Alignment explanation
Indices: 98229974--98230396 Score: 422
Period size: 137 Copynumber: 2.9 Consensus size: 141
98229964 TTATCTTTGA
* * * * * * * **
98229974 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCAGGTTGCCATGGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTATCTT
*** * * **
98230039 TCAACCATGGTCTTGTTCATTTCATGTTACATTGCCATGGTATCTTTCAACCATGGTCTTA-T-T
66 TCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTAT
* *
98230102 -CA-TTCCCGT
131 ACATTTCACAT
*
98230111 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATAGTATCTT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTATCTT
*
98230176 TCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACAATGGTCTTACACA
66 TCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTT----A
* *
98230241 TTTTATACACATTTTATAT
127 --TTAT--ACATTTCACAT
*
98230260 CCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATACACATTTTATATCCTGTTGC
1 CATGTTGCCATGGTATCTTTCAACCATGG---T---C----T-TACACATTTTATATCCTGTTGC
* *
98230325 CATGGTATCTTTCAACCATGGTCTTACACATTTTATATCATGTTGCCATGGTGTCTTTCAACCAT
55 CATGGTATCTTTCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCAT
98230390 GGTCTTA
120 GGTCTTA
98230397 CACATTTCAT
Statistics
Matches: 236, Mismatches: 27, Indels: 27
0.81 0.09 0.09
Matches are distributed among these distances:
137 107 0.45
141 1 0.00
144 1 0.00
145 1 0.00
148 2 0.01
149 31 0.13
152 1 0.00
155 1 0.00
156 1 0.00
159 1 0.00
160 89 0.38
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.41
Consensus pattern (141 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCCTGTTGCCATGGTATCTT
TCAACCATGGTCTTACACATTTCATATCATGTTGCCATGGTATCTTTCAACCATGGTCTTATTAT
ACATTTCACAT
Found at i:98230277 original size:57 final size:57
Alignment explanation
Indices: 98230189--98230361 Score: 319
Period size: 57 Copynumber: 3.0 Consensus size: 57
98230179 ACCATGGTCT
* * *
98230189 TACACATTTCATATCATGTTGCCATGGTATCTTTCAACAATGGTCTTACACATTTTA
1 TACACATTTTATATCCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTA
98230246 TACACATTTTATATCCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTA
1 TACACATTTTATATCCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTA
98230303 TACACATTTTATATCCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTA
1 TACACATTTTATATCCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTA
98230360 TA
1 TA
98230362 TCATGTTGCC
Statistics
Matches: 113, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
57 113 1.00
ACGTcount: A:0.26, C:0.22, G:0.10, T:0.42
Consensus pattern (57 bp):
TACACATTTTATATCCTGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTTA
Found at i:98235259 original size:21 final size:22
Alignment explanation
Indices: 98235210--98235259 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
98235200 ATTTTCTAAC
98235210 ATATTAATAAATTAATTTTAAAA
1 ATATT-ATAAATTAATTTTAAAA
* *
98235233 AAATTATAATTTAA-TTTAAAA
1 ATATTATAAATTAATTTTAAAA
*
98235254 TTATTA
1 ATATTA
98235260 GTTAAAAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 11 0.48
22 8 0.35
23 4 0.17
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
ATATTATAAATTAATTTTAAAA
Found at i:98249536 original size:20 final size:19
Alignment explanation
Indices: 98249513--98249560 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
98249503 ATTCAAGAAG
98249513 TTAAAAAATAACTCTTAATT-
1 TTAAAAAATAAC-C-TAATTA
98249533 TTAAAAAA-AACCTAATTA
1 TTAAAAAATAACCTAATTA
98249551 TCTAAAAAAT
1 T-TAAAAAAT
98249561 GATTTCAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
17 5 0.20
18 2 0.08
19 10 0.40
20 8 0.32
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.33
Consensus pattern (19 bp):
TTAAAAAATAACCTAATTA
Found at i:98260317 original size:108 final size:108
Alignment explanation
Indices: 98260122--98260359 Score: 440
Period size: 108 Copynumber: 2.2 Consensus size: 108
98260112 CCCACTACAT
*
98260122 CAGGGAACAGCCCTGGTGTTGGACATTCTTTTGCAGACGTTGTTGAAGACATTGTTGAACAAAAC
1 CAGGGCACAGCCCTGGTGTTGGACATTCTTTTGCAGACGTTGTTGAAGACATTGTTGAACAAAAC
98260187 CCAGCAAGCATTAGCGTGCAAGGCAATGGCAAGCGTTCAATTG
66 CCAGCAAGCATTAGCGTGCAAGGCAATGGCAAGCGTTCAATTG
* *
98260230 CGGGGCACAGCCCTGGTGTTGGACATTCTTTTGCAGACGTTGTTGAAGATATTGTTGAACAAAAC
1 CAGGGCACAGCCCTGGTGTTGGACATTCTTTTGCAGACGTTGTTGAAGACATTGTTGAACAAAAC
98260295 CCAGCAAGCATTAGCGTGCAAGGCAATGGCAAGCGTTCAATTG
66 CCAGCAAGCATTAGCGTGCAAGGCAATGGCAAGCGTTCAATTG
*
98260338 CAGGGCACAGCCCTGGAGTTGG
1 CAGGGCACAGCCCTGGTGTTGG
98260360 TCATGCTTAT
Statistics
Matches: 125, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
108 125 1.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (108 bp):
CAGGGCACAGCCCTGGTGTTGGACATTCTTTTGCAGACGTTGTTGAAGACATTGTTGAACAAAAC
CCAGCAAGCATTAGCGTGCAAGGCAATGGCAAGCGTTCAATTG
Found at i:98262724 original size:39 final size:34
Alignment explanation
Indices: 98262686--98262751 Score: 132
Period size: 34 Copynumber: 1.9 Consensus size: 34
98262676 TCAATTGGTT
98262686 TGGTTCAATGAATCAAATATTTGAAACCCAATGC
1 TGGTTCAATGAATCAAATATTTGAAACCCAATGC
98262720 TGGTTCAATGAATCAAATATTTGAAACCCAAT
1 TGGTTCAATGAATCAAATATTTGAAACCCAAT
98262752 AAGATTATTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (34 bp):
TGGTTCAATGAATCAAATATTTGAAACCCAATGC
Found at i:98265120 original size:15 final size:15
Alignment explanation
Indices: 98265015--98265122 Score: 69
Period size: 15 Copynumber: 7.2 Consensus size: 15
98265005 CCAATATCTC
98265015 GATACCCATATATTT
1 GATACCCATATATTT
**
98265030 GACTTTCCA-ATATTT
1 GA-TACCCATATATTT
*
98265045 GATACCCATATCTTT
1 GATACCCATATATTT
**
98265060 GACTTTCCA-ATATTT
1 GA-TACCCATATATTT
* * *
98265075 AATACTCATATCTTT
1 GATACCCATATATTT
**
98265090 GACTTTCCAT-TATTT
1 GA-TACCCATATATTT
*
98265105 GATACCCATATCTTT
1 GATACCCATATATTT
98265120 GAT
1 GAT
98265123 TTTCCATAAA
Statistics
Matches: 66, Mismatches: 21, Indels: 12
0.67 0.21 0.12
Matches are distributed among these distances:
14 12 0.18
15 42 0.64
16 12 0.18
ACGTcount: A:0.28, C:0.21, G:0.06, T:0.44
Consensus pattern (15 bp):
GATACCCATATATTT
Found at i:98265129 original size:30 final size:30
Alignment explanation
Indices: 98265005--98265128 Score: 185
Period size: 30 Copynumber: 4.1 Consensus size: 30
98264995 TTTTATTATG
* *
98265005 CCAATATCTCGATACCCATATATTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
98265036 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
98265066 CCAATATTTAATACTCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* *
98265096 CCATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
98265126 CCA
1 CCA
98265129 TAAATATGGA
Statistics
Matches: 85, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
30 78 0.92
31 7 0.08
ACGTcount: A:0.27, C:0.23, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:98266112 original size:22 final size:22
Alignment explanation
Indices: 98266086--98266131 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
98266076 TTGATAACGA
98266086 TTGAATTTTTATAATTTAATCT
1 TTGAATTTTTATAATTTAATCT
98266108 TTGAATTTTTATAATTTAATCT
1 TTGAATTTTTATAATTTAATCT
98266130 TT
1 TT
98266132 AAATATTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.61
Consensus pattern (22 bp):
TTGAATTTTTATAATTTAATCT
Found at i:98267756 original size:15 final size:15
Alignment explanation
Indices: 98267736--98267766 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
98267726 AATTATCCTA
98267736 TGAATTAATTCATTG
1 TGAATTAATTCATTG
*
98267751 TGAATTAATTCGTTG
1 TGAATTAATTCATTG
98267766 T
1 T
98267767 ACTTTTAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.06, G:0.16, T:0.48
Consensus pattern (15 bp):
TGAATTAATTCATTG
Found at i:98268372 original size:18 final size:18
Alignment explanation
Indices: 98268351--98268387 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
98268341 TATTCTCTGT
98268351 TATTCAATTTTCATACAG
1 TATTCAATTTTCATACAG
98268369 TATTCAATTTTCATACAG
1 TATTCAATTTTCATACAG
98268387 T
1 T
98268388 TATTAACAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.05, T:0.46
Consensus pattern (18 bp):
TATTCAATTTTCATACAG
Found at i:98268448 original size:20 final size:20
Alignment explanation
Indices: 98268425--98268465 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
98268415 ACTATAAGAT
98268425 TCGAACTTAAATACTTAAAG
1 TCGAACTTAAATACTTAAAG
*
98268445 TCGAACTTAGATACTTAAAG
1 TCGAACTTAAATACTTAAAG
98268465 T
1 T
98268466 ATTAGTACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (20 bp):
TCGAACTTAAATACTTAAAG
Found at i:98275410 original size:33 final size:33
Alignment explanation
Indices: 98275368--98275436 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
98275358 ACAAAAACAA
98275368 AAAAATTAAAATTTATATTCAATTATGTTAAAT
1 AAAAATTAAAATTTATATTCAATTATGTTAAAT
98275401 AAAAATTAAAATTTATATTCAATTATGTTAAAT
1 AAAAATTAAAATTTATATTCAATTATGTTAAAT
98275434 AAA
1 AAA
98275437 GTTAATAGTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (33 bp):
AAAAATTAAAATTTATATTCAATTATGTTAAAT
Found at i:98282444 original size:18 final size:19
Alignment explanation
Indices: 98282421--98282467 Score: 87
Period size: 18 Copynumber: 2.5 Consensus size: 19
98282411 TACAATCATA
98282421 CAATCTTAGATATGAT-TG
1 CAATCTTAGATATGATATG
98282439 CAATCTTAGATATGATATG
1 CAATCTTAGATATGATATG
98282458 CAATCTTAGA
1 CAATCTTAGA
98282468 AGATATAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
18 16 0.57
19 12 0.43
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (19 bp):
CAATCTTAGATATGATATG
Found at i:98287111 original size:83 final size:83
Alignment explanation
Indices: 98286972--98287137 Score: 323
Period size: 83 Copynumber: 2.0 Consensus size: 83
98286962 GAGGAACTTC
*
98286972 CTGTAGTCTTTAGGAATTTTTTAGAGTAATTCTCGAAACATTCTTGTTACTTTAGAGCCTAGGAG
1 CTGTAGTCTTTAGGAATTTTTTAGAGTAATTCTCGAAACATTCTTGTTACTCTAGAGCCTAGGAG
98287037 TAATAGGATTTCATTTGT
66 TAATAGGATTTCATTTGT
98287055 CTGTAGTCTTTAGGAATTTTTTAGAGTAATTCTCGAAACATTCTTGTTACTCTAGAGCCTAGGAG
1 CTGTAGTCTTTAGGAATTTTTTAGAGTAATTCTCGAAACATTCTTGTTACTCTAGAGCCTAGGAG
98287120 TAATAGGATTTCATTTGT
66 TAATAGGATTTCATTTGT
98287138 GAAATGGGCT
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 82 1.00
ACGTcount: A:0.27, C:0.13, G:0.19, T:0.42
Consensus pattern (83 bp):
CTGTAGTCTTTAGGAATTTTTTAGAGTAATTCTCGAAACATTCTTGTTACTCTAGAGCCTAGGAG
TAATAGGATTTCATTTGT
Found at i:98291940 original size:89 final size:87
Alignment explanation
Indices: 98291812--98291972 Score: 207
Period size: 89 Copynumber: 1.8 Consensus size: 87
98291802 TTAGACGGAA
* * *
98291812 AGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTCACATCGAAGTAGATCCAAGATGA
1 AGCAGATCGAAGACATAGCAGATCTAACCTTCCGATGTTTACAC-T-GAAGCAGATCCAAGATGA
98291877 TTTGGCATCCTTGAGTTGACAATG
64 TTTGGCATCCTTGAGTTGACAATG
* ** * * *
98291901 AGCAGATCGAAGACATAGCAGATTTGGCTTTCACG-TGTTTACGCTGAAGCAGATCTAAGATGAT
1 AGCAGATCGAAGACATAGCAGATCTAACCTTC-CGATGTTTACACTGAAGCAGATCCAAGATGAT
98291965 TTGGCATC
65 TTGGCATC
98291973 TCTGTACTGT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
87 25 0.40
88 1 0.02
89 35 0.56
90 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (87 bp):
AGCAGATCGAAGACATAGCAGATCTAACCTTCCGATGTTTACACTGAAGCAGATCCAAGATGATT
TGGCATCCTTGAGTTGACAATG
Found at i:98292134 original size:78 final size:78
Alignment explanation
Indices: 98292005--98292378 Score: 457
Period size: 78 Copynumber: 4.6 Consensus size: 78
98291995 TAAAGAAACA
** * * * *
98292005 GATTTGGCATCTCCATATTCGACGGAGAGCAAATCGAAGACATAGCAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
98292070 GCAGATCCAAGAT
66 GCAGATCCAAGAT
* * * *
98292083 GATTTGGAATCTTTGTATTAGACAGGGAGCAGATCGAAGACACAACAGATCTGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
98292148 GCAGATCCAAGAT
66 GCAGATCCAAGAT
*
98292161 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGAT-TGGACCTTTATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCT-GACCTTCATTGA
*
98292225 AGTAGATCCAAGAT
65 AGCAGATCCAAGAT
*
98292239 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATGTGT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCA-----
98292304 TTACATCGAAGCAGATCCAAGAT
61 -T---T-GAAGCAGATCCAAGAT
* *
98292327 GACAGATTTGGCATCTCTGTATTAGACAGGGAGCAAATCGAAG--ATAACAGAT
1 ----GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGAT
98292379 TTGGCATCTC
Statistics
Matches: 258, Mismatches: 22, Indels: 20
0.86 0.07 0.07
Matches are distributed among these distances:
77 1 0.00
78 194 0.75
79 1 0.00
84 1 0.00
87 1 0.00
88 15 0.06
90 8 0.03
92 37 0.14
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAACAGATCTGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:98292377 original size:45 final size:45
Alignment explanation
Indices: 98292239--98292512 Score: 277
Period size: 45 Copynumber: 6.1 Consensus size: 45
98292229 GATCCAAGAT
*
98292239 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA
* * * * * * * *
98292286 GATCTGACCT-TCATGTGTTTACATC--GAAGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACA
* *
98292331 GATTTGGCATCTCTGTATTAGACAGGGAGCAAATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* *
98292376 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * * *
98292420 GATTTGGCGTTTCTGTATTAGACGGGGAGTAGATCGAATATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * * * *
98292465 GATTTGGCGTCTCTGTATTAGATGGGGAACAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
98292510 GAT
1 GAT
98292513 ATCGCCTTCT
Statistics
Matches: 185, Mismatches: 35, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
43 1 0.01
44 42 0.23
45 111 0.60
46 4 0.02
47 22 0.12
48 4 0.02
49 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.26
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:98292448 original size:89 final size:90
Alignment explanation
Indices: 98292239--98292512 Score: 268
Period size: 89 Copynumber: 3.0 Consensus size: 90
98292229 GATCCAAGAT
* * * * * * *
98292239 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCT-TCATGTG
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAAATCGAAG--ATAACAGATTTGGCATCTC-TGTA
* *** *
98292303 TT-TACATCGAAGCAGATCCAAGAT-GACA
63 TTAGACGGGGAA-CAGATCAAAGATAG-CA
98292331 GATTTGGCATCTCTGTATTAGACAGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTA
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTA
* **
98292396 GACGGGGAGCAGATTGAAGA-AGCA
66 GACGGGGAACAGATCAAAGATAGCA
* * * * * * *
98292420 GATTTGGCGTTTCTGTATTAGACGGGGAGTAGATCGAATATAACAGATTTGGCGTCTCTGTATTA
1 GATTTGGCATCTCTGTATTAGACAGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTA
*
98292485 GATGGGGAACAGATCAAAGATAGCA
66 GACGGGGAACAGATCAAAGATAGCA
98292510 GAT
1 GAT
98292513 ATCGCCTTCT
Statistics
Matches: 153, Mismatches: 25, Indels: 10
0.81 0.13 0.05
Matches are distributed among these distances:
89 76 0.50
90 34 0.22
91 6 0.04
92 37 0.24
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.26
Consensus pattern (90 bp):
GATTTGGCATCTCTGTATTAGACAGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTATTA
GACGGGGAACAGATCAAAGATAGCA
Found at i:98292505 original size:134 final size:136
Alignment explanation
Indices: 98292239--98292512 Score: 315
Period size: 134 Copynumber: 2.0 Consensus size: 136
98292229 GATCCAAGAT
*
98292239 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAGATCTGACCTTCATGTGT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGA-ATAGCAGATCTGACCTTCATGTGA
* * *
98292304 TTACATCGAAGCAGATCCAAGATGACAGATTTGGCATCTCTGTATTAGACAGGGAGCAAATCGAA
65 TTACATCGAAGCAGATCCAAGATAACAGATTTGGCATCTCTGTATTAGACAGGGAACAAATCAAA
98292369 GATAACA
130 GATAACA
* * * *
98292376 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGAAG-A-AGCAGATTTGGCGTTTC-TGT-A
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGAATAGCAGATCTGAC-CTTCATGTGA
* * * * * * ** *
98292437 TTAGA-CGGGGAGTAGATCGAATATAACAGATTTGGCGTCTCTGTATTAGATGGGGAACAGATCA
65 TTACATC--GAAGCAGATCCAAGATAACAGATTTGGCATCTCTGTATTAGACAGGGAACAAATCA
*
98292501 AAGATAGCA
128 AAGATAACA
98292510 GAT
1 GAT
98292513 ATCGCCTTCT
Statistics
Matches: 116, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
132 1 0.01
133 4 0.03
134 69 0.59
135 4 0.03
137 38 0.33
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.26
Consensus pattern (136 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGAATAGCAGATCTGACCTTCATGTGAT
TACATCGAAGCAGATCCAAGATAACAGATTTGGCATCTCTGTATTAGACAGGGAACAAATCAAAG
ATAACA
Found at i:98292890 original size:17 final size:17
Alignment explanation
Indices: 98292870--98292933 Score: 74
Period size: 17 Copynumber: 3.6 Consensus size: 17
98292860 CAATGATATG
98292870 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
* *
98292887 CAATCTTATATATGATTG
1 CAATCTTAGATATGA-TA
*
98292905 TAATCTTAGATATGATA
1 CAATCTTAGATATGATA
98292922 TGCAATCTTAGA
1 --CAATCTTAGA
98292934 AGATATAATT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
17 15 0.39
18 14 0.37
19 9 0.24
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:98292911 original size:18 final size:19
Alignment explanation
Indices: 98292862--98292933 Score: 105
Period size: 19 Copynumber: 3.9 Consensus size: 19
98292852 ATAATCTTCA
98292862 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
98292881 ATGATA--CAATCTTATAT
1 ATGATATGCAATCTTAGAT
*
98292898 ATGAT-TGTAATCTTAGAT
1 ATGATATGCAATCTTAGAT
98292916 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
98292934 AGATATAATT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
17 15 0.33
18 14 0.30
19 17 0.37
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.39
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:98292911 original size:35 final size:37
Alignment explanation
Indices: 98292862--98292931 Score: 108
Period size: 35 Copynumber: 1.9 Consensus size: 37
98292852 ATAATCTTCA
98292862 ATGATATGCAATCTTAGATATGATA-CAATCTTATAT
1 ATGATATGCAATCTTAGATATGATAGCAATCTTATAT
*
98292898 ATGAT-TGTAATCTTAGATATGATATGCAATCTTA
1 ATGATATGCAATCTTAGATATGATA-GCAATCTTA
98292932 GAAGATATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
35 18 0.58
36 5 0.16
37 8 0.26
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.40
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGATAGCAATCTTATAT
Found at i:98296413 original size:23 final size:23
Alignment explanation
Indices: 98296386--98296429 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
98296376 AGTCTTTCCC
98296386 TTTTACCTTT-TTTCTTTATTTTA
1 TTTTA-CTTTATTTCTTTATTTTA
*
98296409 TTTTATTTTATTTCTTTATTT
1 TTTTACTTTATTTCTTTATTT
98296430 CTTTATTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (23 bp):
TTTTACTTTATTTCTTTATTTTA
Found at i:98296454 original size:13 final size:13
Alignment explanation
Indices: 98296404--98296465 Score: 56
Period size: 13 Copynumber: 4.7 Consensus size: 13
98296394 TTTTTCTTTA
*
98296404 TTTTATTTTATTT
1 TTTTATATTATTT
*
98296417 TATTTCT-TTATTT
1 T-TTTATATTATTT
*
98296430 CTTTATTATTATTT
1 TTTTA-TATTATTT
98296444 TTTTATATTATTT
1 TTTTATATTATTT
98296457 ATTTT-TATT
1 -TTTTATATT
98296466 TTACTGATCT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
12 3 0.07
13 20 0.49
14 18 0.44
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTATATTATTT
Found at i:98296464 original size:23 final size:22
Alignment explanation
Indices: 98296395--98296467 Score: 76
Period size: 23 Copynumber: 3.2 Consensus size: 22
98296385 CTTTTACCTT
98296395 TTTTCTTTATTTTATTT-TATTTTA
1 TTTT-TTTA-TTTATTTAT-TTTTA
* * *
98296419 TTTCTTTATTTCTTTATTATTA
1 TTTTTTTATTTATTTATTTTTA
98296441 TTTTTTTATATTATTTATTTTTA
1 TTTTTTTAT-TTATTTATTTTTA
98296464 TTTT
1 TTTT
98296468 ACTGATCTGT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
22 18 0.44
23 20 0.49
24 3 0.07
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (22 bp):
TTTTTTTATTTATTTATTTTTA
Found at i:98296560 original size:19 final size:18
Alignment explanation
Indices: 98296522--98296561 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
98296512 TTAATTTTAT
*
98296522 TTTAATTTATTTCTGCTA
1 TTTAATTTATTTCTACTA
*
98296540 TTTAATTATATTTCTATTA
1 TTTAATT-TATTTCTACTA
98296559 TTT
1 TTT
98296562 TTAGTTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.25, C:0.07, G:0.03, T:0.65
Consensus pattern (18 bp):
TTTAATTTATTTCTACTA
Found at i:98297444 original size:16 final size:16
Alignment explanation
Indices: 98297423--98297460 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
98297413 ATGATAAAGA
98297423 CACTTAGGTTTTAACG
1 CACTTAGGTTTTAACG
98297439 CACTTAGGTTTTAACG
1 CACTTAGGTTTTAACG
98297455 CACTTA
1 CACTTA
98297461 TCCCATAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (16 bp):
CACTTAGGTTTTAACG
Found at i:98304067 original size:15 final size:15
Alignment explanation
Indices: 98304033--98304103 Score: 56
Period size: 15 Copynumber: 4.6 Consensus size: 15
98304023 ATATTATTGA
98304033 AAATA-TTTAAT-AT
1 AAATATTTTAATAAT
*
98304046 TAATATTTTAATAAT
1 AAATATTTTAATAAT
*
98304061 AAATATTTATTATAATTAT
1 AAATA--T-TT-TAATAAT
*
98304080 AAATATATTAATAAT
1 AAATATTTTAATAAT
*
98304095 AAATGTTTT
1 AAATATTTT
98304104 GTAGTATAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
13 4 0.09
14 6 0.13
15 19 0.42
16 1 0.02
17 2 0.04
18 2 0.04
19 11 0.24
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (15 bp):
AAATATTTTAATAAT
Found at i:98304076 original size:19 final size:19
Alignment explanation
Indices: 98304049--98304085 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
98304039 TTAATATTAA
*
98304049 TATTTTAATAATAAATATT
1 TATTATAATAATAAATATT
*
98304068 TATTATAATTATAAATAT
1 TATTATAATAATAAATAT
98304086 ATTAATAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TATTATAATAATAAATATT
Found at i:98304684 original size:18 final size:20
Alignment explanation
Indices: 98304658--98304706 Score: 66
Period size: 18 Copynumber: 2.5 Consensus size: 20
98304648 ATATATGACA
98304658 TTGATTATTACAAAAT-ATT
1 TTGATTATTACAAAATAATT
*
98304677 TT-ATTATTATAAAATAAATT
1 TTGATTATTACAAAAT-AATT
98304697 TTGATTATTA
1 TTGATTATTA
98304707 AAAGGAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 12 0.46
19 2 0.08
20 5 0.19
21 7 0.27
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (20 bp):
TTGATTATTACAAAATAATT
Found at i:98304793 original size:13 final size:14
Alignment explanation
Indices: 98304775--98304803 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
98304765 TACAAAGAAC
98304775 AATCTA-AAATATA
1 AATCTACAAATATA
98304788 AATCTACAAATATA
1 AATCTACAAATATA
98304802 AA
1 AA
98304804 ATAAACTCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (14 bp):
AATCTACAAATATA
Found at i:98304986 original size:13 final size:14
Alignment explanation
Indices: 98304940--98304985 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
98304930 AATATTAATT
* *
98304940 TTTTTAAAAAAATA
1 TTTTTCAAAAACTA
*
98304954 TTTTTCAAAAATTA
1 TTTTTCAAAAACTA
*
98304968 TTTTTCGAAAACTA
1 TTTTTCAAAAACTA
98304982 TTTT
1 TTTT
98304986 CAATGAAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.50
Consensus pattern (14 bp):
TTTTTCAAAAACTA
Found at i:98309259 original size:38 final size:38
Alignment explanation
Indices: 98309208--98309283 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
98309198 TTTTTTTCTT
98309208 TTTCGATTTTCTAATAAATTTATAAATATGAGAGATAA
1 TTTCGATTTTCTAATAAATTTATAAATATGAGAGATAA
98309246 TTTCGATTTTCTAATAAATTTATAAATATGAGAGATAA
1 TTTCGATTTTCTAATAAATTTATAAATATGAGAGATAA
98309284 AAAAAATTAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.42, C:0.05, G:0.11, T:0.42
Consensus pattern (38 bp):
TTTCGATTTTCTAATAAATTTATAAATATGAGAGATAA
Found at i:98310302 original size:30 final size:30
Alignment explanation
Indices: 98310260--98310334 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
98310250 ACGATAGTAT
*
98310260 ATATAAACTTTAATT-TGGTGCAATTATAC
1 ATATAAACTTTAATTGTGGTGCAAATATAC
* * *
98310289 ATATGAAATTTTAATTGTGGTTCAAATATAT
1 ATAT-AAACTTTAATTGTGGTGCAAATATAC
98310320 ACT-TAAACTTTAATT
1 A-TATAAACTTTAATT
98310335 TTGATTTAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
29 4 0.11
30 20 0.53
31 13 0.34
32 1 0.03
ACGTcount: A:0.39, C:0.08, G:0.09, T:0.44
Consensus pattern (30 bp):
ATATAAACTTTAATTGTGGTGCAAATATAC
Found at i:98315378 original size:22 final size:22
Alignment explanation
Indices: 98315353--98315418 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 22
98315343 TATAACTTTC
98315353 TTTATATATATTTTTAGATTTT
1 TTTATATATATTTTTAGATTTT
* * *
98315375 TTTAAATATAAATTTTAGA-ATT
1 TTTATATAT-ATTTTTAGATTTT
* *
98315397 TTTATAAATATTTTGA-ATTTT
1 TTTATATATATTTTTAGATTTT
98315418 T
1 T
98315419 AAATTTGTTT
Statistics
Matches: 34, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
20 1 0.03
21 8 0.24
22 17 0.50
23 8 0.24
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.61
Consensus pattern (22 bp):
TTTATATATATTTTTAGATTTT
Found at i:98315404 original size:18 final size:19
Alignment explanation
Indices: 98315381--98315419 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
98315371 TTTTTTTAAA
98315381 TATAAAT-TTTAGAATTTT
1 TATAAATATTTAGAATTTT
*
98315399 TATAAATATTTTGAATTTT
1 TATAAATATTTAGAATTTT
98315418 TA
1 TA
98315420 AATTTGTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (19 bp):
TATAAATATTTAGAATTTT
Found at i:98324900 original size:21 final size:21
Alignment explanation
Indices: 98324874--98324914 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
98324864 ATCTGCTCAA
* *
98324874 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
98324895 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
98324915 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:98330201 original size:13 final size:13
Alignment explanation
Indices: 98330183--98330238 Score: 76
Period size: 13 Copynumber: 4.3 Consensus size: 13
98330173 AAATTTTTTC
98330183 AAAGCACTTCTCA
1 AAAGCACTTCTCA
*
98330196 AAAGCACTTCTCC
1 AAAGCACTTCTCA
* *
98330209 ACAGCACTTTTCA
1 AAAGCACTTCTCA
*
98330222 AAAGCACTTTTCA
1 AAAGCACTTCTCA
98330235 AAAG
1 AAAG
98330239 TAATGAAGAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 38 1.00
ACGTcount: A:0.38, C:0.29, G:0.09, T:0.25
Consensus pattern (13 bp):
AAAGCACTTCTCA
Found at i:98331062 original size:6 final size:6
Alignment explanation
Indices: 98331051--98331092 Score: 68
Period size: 6 Copynumber: 7.2 Consensus size: 6
98331041 ATTTATTTTA
*
98331051 TTTATT TTTATT TTTATT TTTATT TTTATT TTT-CT TTTATT T
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT T
98331093 AATTTTCTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
5 4 0.12
6 29 0.88
ACGTcount: A:0.14, C:0.02, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTATT
Found at i:98334309 original size:23 final size:24
Alignment explanation
Indices: 98334283--98334341 Score: 77
Period size: 25 Copynumber: 2.5 Consensus size: 24
98334273 ATAATGACAA
*
98334283 TTGTAATAAAA-ATAT-TGGTACAT
1 TTGTAATAAAAGATATAT-GTACAC
98334306 TTGTAATAAATAGATATATGTACAC
1 TTGTAATAAA-AGATATATGTACAC
98334331 TTGTAATAAAA
1 TTGTAATAAAA
98334342 TAATTAATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
23 10 0.31
24 2 0.06
25 19 0.59
26 1 0.03
ACGTcount: A:0.46, C:0.05, G:0.12, T:0.37
Consensus pattern (24 bp):
TTGTAATAAAAGATATATGTACAC
Found at i:98334569 original size:22 final size:21
Alignment explanation
Indices: 98334540--98334580 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
98334530 AAAACAAAGT
98334540 AAATAAAAGAATA-AAAGAATG
1 AAATAAAAGAA-ACAAAGAATG
98334561 AAATAAAAAGAAACAAAGAA
1 AAAT-AAAAGAAACAAAGAA
98334581 AAGTAAGAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.76, C:0.02, G:0.12, T:0.10
Consensus pattern (21 bp):
AAATAAAAGAAACAAAGAATG
Found at i:98341733 original size:21 final size:21
Alignment explanation
Indices: 98341698--98341768 Score: 124
Period size: 21 Copynumber: 3.3 Consensus size: 21
98341688 AGGCACTTTA
98341698 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTA--TCAGGCACCTCG
98341721 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
98341742 TGTGTCGTATCAGGCACCTCG
1 TGTGTCGTATCAGGCACCTCG
98341763 TGTGTC
1 TGTGTC
98341769 ATTTTAGGCA
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
21 39 0.81
23 9 0.19
ACGTcount: A:0.13, C:0.27, G:0.28, T:0.32
Consensus pattern (21 bp):
TGTGTCGTATCAGGCACCTCG
Found at i:98341777 original size:21 final size:21
Alignment explanation
Indices: 98341709--98341779 Score: 106
Period size: 21 Copynumber: 3.4 Consensus size: 21
98341699 GTGTCGTATT
*
98341709 TCAGGCACCTCGTGTGTCGTA
1 TCAGGCACCTCGTGTGTCATA
*
98341730 TCAGGCACCTCGTGTGTCGTA
1 TCAGGCACCTCGTGTGTCATA
*
98341751 TCAGGCACCTCGTGTGTCATT
1 TCAGGCACCTCGTGTGTCATA
*
98341772 TTAGGCAC
1 TCAGGCAC
98341780 TTTATGTGTC
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 47 1.00
ACGTcount: A:0.15, C:0.28, G:0.27, T:0.30
Consensus pattern (21 bp):
TCAGGCACCTCGTGTGTCATA
Found at i:98341778 original size:42 final size:42
Alignment explanation
Indices: 98341685--98341793 Score: 128
Period size: 42 Copynumber: 2.5 Consensus size: 42
98341675 GGCTTTACTG
* * *
98341685 ATCAGGCACTTTATGTGTCGTATTTCAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCGTA--TCAGGCACCTCGTGTGTCAT
*
98341729 ATCAGGCACCTCGTGTGTCGTATCAGGCACCTCGTGTGTCAT
1 ATCAGGCACCTCATGTGTCGTATCAGGCACCTCGTGTGTCAT
* * * *
98341771 TTTAGGCACTTTATGTGTCGTAT
1 ATCAGGCACCTCATGTGTCGTAT
98341794 ACTGATCAGG
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 37 0.66
44 19 0.34
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.36
Consensus pattern (42 bp):
ATCAGGCACCTCATGTGTCGTATCAGGCACCTCGTGTGTCAT
Found at i:98344303 original size:11 final size:10
Alignment explanation
Indices: 98344293--98344346 Score: 53
Period size: 10 Copynumber: 5.6 Consensus size: 10
98344283 TTTTTTAATT
98344293 TTTTTA-AAA
1 TTTTTATAAA
98344302 TTTTTATAAA
1 TTTTTATAAA
*
98344312 TTTTAAT-AA
1 TTTTTATAAA
98344321 TGTTTTA-AAA
1 T-TTTTATAAA
98344331 -TTTTATGAAA
1 TTTTTAT-AAA
98344341 TTTTTA
1 TTTTTA
98344347 AAAAAATAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
8 5 0.14
9 9 0.24
10 18 0.49
11 5 0.14
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (10 bp):
TTTTTATAAA
Found at i:98344315 original size:19 final size:18
Alignment explanation
Indices: 98344293--98344349 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 18
98344283 TTTTTTAATT
98344293 TTTTTAAAATTTTTATAAA
1 TTTTTAAAATTTTTA-AAA
98344312 -TTTTAATAATGTTTTAAAA
1 TTTTTAA-AAT-TTTTAAAA
*
98344331 TTTTATGAAATTTTTAAAA
1 TTTT-TAAAATTTTTAAAA
98344350 AAATAATTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
18 6 0.18
19 14 0.42
20 11 0.33
21 2 0.06
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (18 bp):
TTTTTAAAATTTTTAAAA
Found at i:98344359 original size:15 final size:15
Alignment explanation
Indices: 98344339--98344382 Score: 56
Period size: 13 Copynumber: 3.0 Consensus size: 15
98344329 AATTTTATGA
98344339 AATTTTTAAAAAAAT
1 AATTTTTAAAAAAAT
98344354 AA-TTTT-AAAAAAT
1 AATTTTTAAAAAAAT
*
98344367 ATATTTTAAAAAAAAT
1 A-ATTTTTAAAAAAAT
98344383 TAAGCTTTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 8 0.32
14 5 0.20
15 5 0.20
16 7 0.28
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (15 bp):
AATTTTTAAAAAAAT
Found at i:98344361 original size:14 final size:15
Alignment explanation
Indices: 98344342--98344380 Score: 64
Period size: 14 Copynumber: 2.7 Consensus size: 15
98344332 TTTATGAAAT
98344342 TTTTAAAAAAATA-A
1 TTTTAAAAAAATATA
98344356 TTTT-AAAAAATATA
1 TTTTAAAAAAATATA
98344370 TTTTAAAAAAA
1 TTTTAAAAAAA
98344381 ATTAAGCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 8 0.35
14 9 0.39
15 6 0.26
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
TTTTAAAAAAATATA
Found at i:98347969 original size:3 final size:3
Alignment explanation
Indices: 98347961--98348007 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
98347951 CTCAAACATA
98347961 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
98348008 ACTTCTCTGT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:98355019 original size:20 final size:19
Alignment explanation
Indices: 98354994--98355036 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
98354984 CTTGATGGTA
**
98354994 ATTCTTTTGGCAATAGTTGC
1 ATTC-TTTGGCAATAACTGC
98355014 ATTC-TTGGCAATAACTGC
1 ATTCTTTGGCAATAACTGC
98355032 ATTCT
1 ATTCT
98355037 GTATATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
18 16 0.80
20 4 0.20
ACGTcount: A:0.23, C:0.19, G:0.16, T:0.42
Consensus pattern (19 bp):
ATTCTTTGGCAATAACTGC
Found at i:98355023 original size:18 final size:18
Alignment explanation
Indices: 98355000--98355036 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
98354990 GGTAATTCTT
**
98355000 TTGGCAATAGTTGCATTC
1 TTGGCAATAACTGCATTC
98355018 TTGGCAATAACTGCATTC
1 TTGGCAATAACTGCATTC
98355036 T
1 T
98355037 GTATATATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (18 bp):
TTGGCAATAACTGCATTC
Found at i:98355762 original size:130 final size:130
Alignment explanation
Indices: 98355541--98356045 Score: 571
Period size: 130 Copynumber: 3.9 Consensus size: 130
98355531 ACAACACGTT
* * * * * * * * *
98355541 GATTTACAATCAAAGTTGATATTATTAAGGTTCATTGATTTGCGATTACAGCCTAAGTTCATTAA
1 GATTTACGATCATAGCTGATATTATTAAAGTTCACTGATTTACGATCACAACCTAAGTTCATTGA
* * *
98355606 TTTACTATCATGAACAATCTTCTCTGAGTTAGCTGATTTACGATCGCTACTCCAAACAGCTTATT
66 TTTACTATCATGAACAATCTTCTCTGAGTTAGCTGATTTACTATCGCTACTCCAAACAGCTCATC
* ** * * * *
98355671 GATTTACGATCATAGTTGATATTATTAAAGTTTGCTGATTTGCGATAACAATCTAAGTTCTTTGA
1 GATTTACGATCATAGCTGATATTATTAAAGTTCACTGATTTACGATCACAACCTAAGTTCATTGA
**
98355736 TTTACTATCATGAACAATCTTCTCTGAGTTAGCTGATTTACTATCGCTACTCCAAACAGCTCGCC
66 TTTACTATCATGAACAATCTTCTCTGAGTTAGCTGATTTACTATCGCTACTCCAAACAGCTCATC
* * * * * *
98355801 AATTTACGATTATAGCTAATATTATT-AAGATTCACTAATTTATGATCACAACCTAAGTTCATTT
1 GATTTACGATCATAGCTGATATTATTAAAG-TTCACTGATTTACGATCACAACCTAAGTTCATTG
* * * ** * **
98355865 ATTTACTATCATGAACAATCTCCTCTAAGTTAGTTGATTTACTATCTTTATTCCAAACATATCAT
65 ATTTACTATCATGAACAATCTTCTCTGAGTTAGCTGATTTACTATCGCTACTCCAAACAGCTCAT
98355930 C
130 C
* * * * * * * *
98355931 GATTTATGATTACAGCTGATATTATTAAGGGTCATTGATTTATGATCAGAACCTAAGTTCATTGA
1 GATTTACGATCATAGCTGATATTATTAAAGTTCACTGATTTACGATCACAACCTAAGTTCATTGA
* * * *
98355996 TTTACTGTCATAAACAATCTTCTCTGAGTTAGTTGATTTACTATTGCTAC
66 TTTACTATCATGAACAATCTTCTCTGAGTTAGCTGATTTACTATCGCTAC
98356046 GATCATAACT
Statistics
Matches: 316, Mismatches: 57, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
129 3 0.01
130 311 0.98
131 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (130 bp):
GATTTACGATCATAGCTGATATTATTAAAGTTCACTGATTTACGATCACAACCTAAGTTCATTGA
TTTACTATCATGAACAATCTTCTCTGAGTTAGCTGATTTACTATCGCTACTCCAAACAGCTCATC
Found at i:98355771 original size:63 final size:63
Alignment explanation
Indices: 98355576--98355774 Score: 152
Period size: 63 Copynumber: 3.1 Consensus size: 63
98355566 TAAGGTTCAT
* ** *
98355576 TGATTTGCGATTACAGCCTAAGTTCATTAATTTACTATCATGAACAATCTTCTCTGAGTTAGC
1 TGATTTGCGATAACAATCTAAGTTCATTGATTTACTATCATGAACAATCTTCTCTGAGTTAGC
* ** * * * *** * * *
98355639 TGATTTACGATCGCTACTCCAAACAGCTT-ATTGATTTACGATCAT-AGTTGATATTAT-TAAAG
1 TGATTTGCGATAAC-AAT-C-TA-AG-TTCATTGATTTACTATCATGA-ACAATCTTCTCT-GAG
*
98355701 TTTGC
59 TTAGC
*
98355706 TGATTTGCGATAACAATCTAAGTTCTTTGATTTACTATCATGAACAATCTTCTCTGAGTTAGC
1 TGATTTGCGATAACAATCTAAGTTCATTGATTTACTATCATGAACAATCTTCTCTGAGTTAGC
98355769 TGATTT
1 TGATTT
98355775 ACTATCGCTA
Statistics
Matches: 97, Mismatches: 29, Indels: 20
0.66 0.20 0.14
Matches are distributed among these distances:
62 2 0.02
63 44 0.45
64 4 0.04
65 2 0.02
66 5 0.05
67 38 0.39
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.40
Consensus pattern (63 bp):
TGATTTGCGATAACAATCTAAGTTCATTGATTTACTATCATGAACAATCTTCTCTGAGTTAGC
Found at i:98356020 original size:260 final size:260
Alignment explanation
Indices: 98355559--98356045 Score: 632
Period size: 260 Copynumber: 1.9 Consensus size: 260
98355549 ATCAAAGTTG
* * * * * *
98355559 ATATTATTAAGGTTCATTGATTTGCGATTACAGCCTAAGTTCATTAATTTACTATCATGAACAAT
1 ATATTATTAAGATTCACTAATTTACGATCACAACCTAAGTTCATTAATTTACTATCATGAACAAT
* * * * * * *
98355624 CTTCTCTGAGTTAGCTGATTTACGATCGCTACTCCAAACAGCTTATTGATTTACGATCATAGTTG
66 CTCCTCTAAGTTAGCTGATTTACGATCGCTACTCCAAACAGATCATCGATTTACGATCACAGCTG
* ** * * * *
98355689 ATATTATTAAAGTTTGCTGATTTGCGATAACAATCTAAGTTCTTTGATTTACTATCATGAACAAT
131 ATATTATTAAAGGTCACTGATTTACGATAACAACCTAAGTTCATTGATTTACTATCATAAACAAT
98355754 CTTCTCTGAGTTAGCTGATTTACTATCGCTACTCCAAACAGCTCGCCAATTTACGATTATAGCTA
196 CTTCTCTGAGTTAGCTGATTTACTATCGCTACTCCAAACAGCTCGCCAATTTACGATTATAGCTA
* *
98355819 ATATTATTAAGATTCACTAATTTATGATCACAACCTAAGTTCATTTATTTACTATCATGAACAAT
1 ATATTATTAAGATTCACTAATTTACGATCACAACCTAAGTTCATTAATTTACTATCATGAACAAT
* * ** * * * *
98355884 CTCCTCTAAGTTAGTTGATTTACTATCTTTATTCCAAACATATCATCGATTTATGATTACAGCTG
66 CTCCTCTAAGTTAGCTGATTTACGATCGCTACTCCAAACAGATCATCGATTTACGATCACAGCTG
* * * * * *
98355949 ATATTATTAAGGGTCATTGATTTATGATCAGAACCTAAGTTCATTGATTTACTGTCATAAACAAT
131 ATATTATTAAAGGTCACTGATTTACGATAACAACCTAAGTTCATTGATTTACTATCATAAACAAT
* *
98356014 CTTCTCTGAGTTAGTTGATTTACTATTGCTAC
196 CTTCTCTGAGTTAGCTGATTTACTATCGCTAC
98356046 GATCATAACT
Statistics
Matches: 189, Mismatches: 38, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
260 189 1.00
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.39
Consensus pattern (260 bp):
ATATTATTAAGATTCACTAATTTACGATCACAACCTAAGTTCATTAATTTACTATCATGAACAAT
CTCCTCTAAGTTAGCTGATTTACGATCGCTACTCCAAACAGATCATCGATTTACGATCACAGCTG
ATATTATTAAAGGTCACTGATTTACGATAACAACCTAAGTTCATTGATTTACTATCATAAACAAT
CTTCTCTGAGTTAGCTGATTTACTATCGCTACTCCAAACAGCTCGCCAATTTACGATTATAGCTA
Found at i:98363301 original size:26 final size:24
Alignment explanation
Indices: 98363271--98363320 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
98363261 AAATAAAAAA
*
98363271 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
98363297 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
98363321 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:98363340 original size:21 final size:21
Alignment explanation
Indices: 98363291--98363349 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
98363281 ATAATAAATC
*
98363291 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
98363311 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
98363333 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
98363350 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:98370054 original size:17 final size:17
Alignment explanation
Indices: 98370016--98370048 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
98370006 ACTACTTTTA
*
98370016 GGACTGACATTTTGAGC
1 GGACTGACATTCTGAGC
98370033 GGACTGACATTCTGAG
1 GGACTGACATTCTGAG
98370049 TTGACTTTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.27
Consensus pattern (17 bp):
GGACTGACATTCTGAGC
Found at i:98373798 original size:2 final size:2
Alignment explanation
Indices: 98373793--98373817 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
98373783 TAAAAAAAAC
98373793 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
98373818 TCGTACATCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:98376289 original size:13 final size:13
Alignment explanation
Indices: 98376247--98376292 Score: 58
Period size: 13 Copynumber: 3.5 Consensus size: 13
98376237 CGTTTAACAT
*
98376247 TACTTTTGAAAAA
1 TACTTTTTAAAAA
98376260 TA-TTTTTAAAAA
1 TACTTTTTAAAAA
*
98376272 TTACTTTTTAAAAG
1 -TACTTTTTAAAAA
98376286 TACTTTT
1 TACTTTT
98376293 GAGAATTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 9 0.31
13 11 0.38
14 9 0.31
ACGTcount: A:0.39, C:0.07, G:0.04, T:0.50
Consensus pattern (13 bp):
TACTTTTTAAAAA
Found at i:98376955 original size:91 final size:91
Alignment explanation
Indices: 98376821--98377022 Score: 255
Period size: 91 Copynumber: 2.2 Consensus size: 91
98376811 AAAAAAAAAA
** * **
98376821 CAATTAAGCCCCTCCTTTTTTTTTTTTGCACTCAATTGAATACTGGAACTTTCAAAATGCATCAA
1 CAATTAAGCCCCAGC-TCTTTTTTTTCCCACTCAATTGAATACTGGAACTTTCAAAATGCATCAA
98376886 AAAG-CCCTCAAACTTCTTCCAAAAAAGT
65 AAAGACCCTCAAA-TTCTTCC-AAAAAGT
* *
98376914 -AATTAAGCCCCAGCTCTTTTTTTTCCCACTCAATTGGATACTTGAACTTTCAAAATGCATCAAA
1 CAATTAAGCCCCAGCTCTTTTTTTTCCCACTCAATTGAATACTGGAACTTTCAAAATGCATCAAA
* * * *
98376978 AAGACCCTTAAATTTTTTCAAAAATT
66 AAGACCCTCAAATTCTTCCAAAAAGT
*
98377004 CAATTAAGCCCCTGCTCTT
1 CAATTAAGCCCCAGCTCTT
98377023 ATTAAAAATT
Statistics
Matches: 95, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
90 6 0.06
91 70 0.74
92 19 0.20
ACGTcount: A:0.33, C:0.25, G:0.08, T:0.34
Consensus pattern (91 bp):
CAATTAAGCCCCAGCTCTTTTTTTTCCCACTCAATTGAATACTGGAACTTTCAAAATGCATCAAA
AAGACCCTCAAATTCTTCCAAAAAGT
Found at i:98377107 original size:21 final size:21
Alignment explanation
Indices: 98377049--98377108 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
98377039 AAAGTATAAA
*
98377049 AATAATAA-ATAATAAATTTT
1 AATAAAAATATAATAAATTTT
* *
98377069 AGA-AAAAATTTATTAAATTTT
1 A-ATAAAAATATAATAAATTTT
*
98377090 AATAAAAATATAAAAAATT
1 AATAAAAATATAATAAATT
98377109 AGAAATTTGT
Statistics
Matches: 31, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
20 6 0.19
21 25 0.81
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.37
Consensus pattern (21 bp):
AATAAAAATATAATAAATTTT
Found at i:98377400 original size:29 final size:27
Alignment explanation
Indices: 98377367--98377493 Score: 87
Period size: 29 Copynumber: 4.4 Consensus size: 27
98377357 TTATATTTTG
*
98377367 TATAATTTTCTTACGACATTATAAAATTT
1 TATAATTTT-TTACGA-TTTATAAAATTT
* * *
98377396 TATAACTTTTTTTA-TATTTCTATATATTT
1 TATAA--TTTTTTACGATTTATA-AAATTT
98377425 TATAATTTTTTACGATTTTTATAAAATTT
1 TATAATTTTTTACGA--TTTATAAAATTT
*
98377454 TAT-ATTTTTTATGATTTTTATATAAAATTT
1 TATAATTTTTTACGA---TT-TATAAAATTT
*
98377484 TCTAATTTTT
1 TATAATTTTT
98377494 AATAAATTTT
Statistics
Matches: 80, Mismatches: 9, Indels: 16
0.76 0.09 0.15
Matches are distributed among these distances:
27 7 0.09
28 15 0.19
29 28 0.35
30 20 0.25
31 10 0.12
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (27 bp):
TATAATTTTTTACGATTTATAAAATTT
Found at i:98377410 original size:60 final size:58
Alignment explanation
Indices: 98377346--98377477 Score: 164
Period size: 58 Copynumber: 2.3 Consensus size: 58
98377336 TTTTACAAAA
*
98377346 TTTATATTTCTTTATATTTTGTATAATTTTCTTACGA-CATTATAAAATTTTATAACTTTT
1 TTTATATTTCTATATA-TTT-TATAATTTT-TTACGATCATTATAAAATTTTATAACTTTT
**
98377406 TTTATATTTCTATATATTTTATAATTTTTTACGATTTTTATAAAATTTTAT-A--TTT
1 TTTATATTTCTATATATTTTATAATTTTTTACGATCATTATAAAATTTTATAACTTTT
*
98377461 TTTATGATTTTTATATA
1 TTTAT-ATTTCTATATA
98377478 AAATTTTCTA
Statistics
Matches: 66, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
55 8 0.12
56 10 0.15
57 7 0.11
58 23 0.35
59 3 0.05
60 15 0.23
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.61
Consensus pattern (58 bp):
TTTATATTTCTATATATTTTATAATTTTTTACGATCATTATAAAATTTTATAACTTTT
Found at i:98377442 original size:28 final size:28
Alignment explanation
Indices: 98377351--98377477 Score: 89
Period size: 29 Copynumber: 4.4 Consensus size: 28
98377341 CAAAATTTAT
*
98377351 ATTTCTTTATATTTTGTATAATTTTCTTACG
1 ATTTCTATATA-TTT-TATAATTTT-TTACG
** * *
98377382 ACAT-TATAAAATTTTATAACTTTTTTTA-T
1 ATTTCTAT-ATATTTTATAA--TTTTTTACG
98377411 ATTTCTATATATTTTATAATTTTTTACG
1 ATTTCTATATATTTTATAATTTTTTACG
* * *
98377439 ATTTTTATAAAATTTTAT-ATTTTTTATG
1 ATTTCTAT-ATATTTTATAATTTTTTACG
*
98377467 ATTTTTATATA
1 ATTTCTATATA
98377478 AAATTTTCTA
Statistics
Matches: 77, Mismatches: 13, Indels: 16
0.73 0.12 0.15
Matches are distributed among these distances:
27 9 0.12
28 24 0.31
29 25 0.32
30 11 0.14
31 8 0.10
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.61
Consensus pattern (28 bp):
ATTTCTATATATTTTATAATTTTTTACG
Found at i:98377462 original size:19 final size:19
Alignment explanation
Indices: 98377385--98377465 Score: 60
Period size: 19 Copynumber: 4.2 Consensus size: 19
98377375 TCTTACGACA
98377385 TTATAAAATTTTATAACTTTT
1 TTATAAAATTTTAT-A-TTTT
* *
98377406 TT-T-ATATTTCTATATATT
1 TTATAAAATTT-TATATTTT
** *
98377424 TTATAATTTTTTACGA-TTT
1 TTATAAAATTTTA-TATTTT
98377443 TTATAAAATTTTATATTTT
1 TTATAAAATTTTATATTTT
98377462 TTAT
1 TTAT
98377466 GATTTTTATA
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
18 6 0.13
19 29 0.62
20 10 0.21
21 2 0.04
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (19 bp):
TTATAAAATTTTATATTTT
Found at i:98377502 original size:19 final size:20
Alignment explanation
Indices: 98377467--98377515 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
98377457 ATTTTTTATG
*
98377467 ATTTTTATATAAAATTTTCTA
1 ATTTTTATATAAAATTTT-AA
98377488 ATTTTTA-AT-AAATTTTAA
1 ATTTTTATATAAAATTTTAA
98377506 ATTTTTATAT
1 ATTTTTATAT
98377516 TTTTGTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
18 8 0.31
19 9 0.35
20 2 0.08
21 7 0.27
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (20 bp):
ATTTTTATATAAAATTTTAA
Found at i:98377525 original size:26 final size:27
Alignment explanation
Indices: 98377478--98377539 Score: 65
Period size: 26 Copynumber: 2.3 Consensus size: 27
98377468 TTTTTATATA
98377478 AAATTTTCTAATTTTTAAT-AAATTT-T
1 AAATTTT-TAATTTTTAATAAAATTTAT
**
98377504 AAATTTTTATATTTTTGTTAAAATTTAT
1 AAATTTTTA-ATTTTTAATAAAATTTAT
*
98377532 TAATTTTT
1 AAATTTTT
98377540 TCTAGTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 2 0.07
26 14 0.47
27 6 0.20
28 8 0.27
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (27 bp):
AAATTTTTAATTTTTAATAAAATTTAT
Found at i:98377551 original size:27 final size:27
Alignment explanation
Indices: 98377476--98377551 Score: 64
Period size: 29 Copynumber: 2.7 Consensus size: 27
98377466 GATTTTTATA
*
98377476 TAAAATTTTCTAATTTTTAATAAATTT
1 TAAATTTTTCTAATTTTTAATAAATTT
* * *
98377503 TAAATTTTTATATTTTTGTTAA-AATTTAT
1 TAAATTTTTCTA-ATTT-TTAATAAATT-T
* *
98377532 TAATTTTTTCTAGTTTTTAA
1 TAAATTTTTCTAATTTTTAA
98377552 CAAAAGCAGT
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
27 14 0.36
28 10 0.26
29 15 0.38
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.61
Consensus pattern (27 bp):
TAAATTTTTCTAATTTTTAATAAATTT
Found at i:98377551 original size:46 final size:48
Alignment explanation
Indices: 98377439--98377539 Score: 129
Period size: 46 Copynumber: 2.1 Consensus size: 48
98377429 ATTTTTTACG
*
98377439 ATTTTT-ATAAAATTTTATATTTTTTATGATTTTTATATAAAATTTTCTA
1 ATTTTTAAT-AAATTTTA-AATTTTTATGATTTTTATATAAAATTTTCTA
*
98377488 ATTTTTAATAAATTTTAAATTTTTAT-ATTTTTGT-TAAAATTTAT-TA
1 ATTTTTAATAAATTTTAAATTTTTATGATTTTTATATAAAATTT-TCTA
98377534 ATTTTT
1 ATTTTT
98377540 TCTAGTTTTT
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
46 16 0.33
47 8 0.17
48 8 0.17
49 14 0.29
50 2 0.04
ACGTcount: A:0.35, C:0.01, G:0.02, T:0.62
Consensus pattern (48 bp):
ATTTTTAATAAATTTTAAATTTTTATGATTTTTATATAAAATTTTCTA
Found at i:98379995 original size:52 final size:52
Alignment explanation
Indices: 98379933--98380035 Score: 179
Period size: 52 Copynumber: 2.0 Consensus size: 52
98379923 TGCCAGCCCT
* *
98379933 TAGATTCGCCTCTAGTTAAAATTTAATTTCGCCATTGTATTAGCTAATATCC
1 TAGATTCGCCTCTAGTTAAAATGTAATTTCACCATTGTATTAGCTAATATCC
*
98379985 TAGATTCGCCTCTAGTTAAAATGTAATTTCACCATTGTATTAGGTAATATC
1 TAGATTCGCCTCTAGTTAAAATGTAATTTCACCATTGTATTAGCTAATATC
98380036 TTTATAATTT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (52 bp):
TAGATTCGCCTCTAGTTAAAATGTAATTTCACCATTGTATTAGCTAATATCC
Found at i:98382866 original size:14 final size:13
Alignment explanation
Indices: 98382829--98382863 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
98382819 GTATTAATGT
98382829 ATTTTAAATAAAA
1 ATTTTAAATAAAA
*
98382842 ATATTTAAATAATA
1 AT-TTTAAATAAAA
98382856 ATTTTAAA
1 ATTTTAAA
98382864 ATATTAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (13 bp):
ATTTTAAATAAAA
Found at i:98384293 original size:14 final size:14
Alignment explanation
Indices: 98384274--98384303 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
98384264 CTCAATTGAC
98384274 AATTTTAGCAATTT
1 AATTTTAGCAATTT
*
98384288 AATTTTAGCGATTT
1 AATTTTAGCAATTT
98384302 AA
1 AA
98384304 AAGCATAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.07, G:0.10, T:0.47
Consensus pattern (14 bp):
AATTTTAGCAATTT
Found at i:98388518 original size:28 final size:26
Alignment explanation
Indices: 98388487--98388560 Score: 69
Period size: 31 Copynumber: 2.6 Consensus size: 26
98388477 GAATATTCAT
98388487 TTTTATTGTTTAAAAATAATGTAATAAA
1 TTTTATT-TTTAAAAATAAT-TAATAAA
*
98388515 TTTTAATGTTTTTAAAAATCTAATTAATATA
1 TTTT-A--TTTTTAAAAA--TAATTAATAAA
98388546 TTTTA-TTTTAAAAAT
1 TTTTATTTTTAAAAAT
98388561 CTAATCAATT
Statistics
Matches: 40, Mismatches: 1, Indels: 13
0.74 0.02 0.24
Matches are distributed among these distances:
25 1 0.03
27 9 0.22
28 4 0.10
29 1 0.03
30 9 0.22
31 12 0.30
32 4 0.10
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.51
Consensus pattern (26 bp):
TTTTATTTTTAAAAATAATTAATAAA
Found at i:98388549 original size:31 final size:28
Alignment explanation
Indices: 98388495--98388565 Score: 76
Period size: 27 Copynumber: 2.5 Consensus size: 28
98388485 ATTTTTATTG
98388495 TTTAAAAA--TAATGTAATAAATTTTAATGTT
1 TTTAAAAATCTAATGTAATAAATTTT-A---T
*
98388525 TTTAAAAATCTAAT-TAATATATTTTAT
1 TTTAAAAATCTAATGTAATAAATTTTAT
98388552 TTTAAAAATCTAAT
1 TTTAAAAATCTAAT
98388566 CAATTCACAA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
27 15 0.39
30 9 0.24
31 10 0.26
32 4 0.11
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.48
Consensus pattern (28 bp):
TTTAAAAATCTAATGTAATAAATTTTAT
Found at i:98396306 original size:12 final size:12
Alignment explanation
Indices: 98396289--98396314 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
98396279 ATTGACTTTT
98396289 TAAAACAAATTC
1 TAAAACAAATTC
98396301 TAAAACAAATTC
1 TAAAACAAATTC
98396313 TA
1 TA
98396315 GTTATTGACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (12 bp):
TAAAACAAATTC
Found at i:98396321 original size:39 final size:38
Alignment explanation
Indices: 98396267--98396349 Score: 121
Period size: 39 Copynumber: 2.2 Consensus size: 38
98396257 CTTTAAATGT
*
98396267 CAAATTCTAATTATTGACTTTTTAAAACAAATTCTAAAA
1 CAAATTCTAATTATTGACTTTTTAAAACAAAAT-TAAAA
* * *
98396306 CAAATTCTAGTTATTGACTTTTTAAAATAAAATTAAAT
1 CAAATTCTAATTATTGACTTTTTAAAACAAAATTAAAA
98396344 CAAATT
1 CAAATT
98396350 TTCAAATTCA
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
38 10 0.25
39 30 0.75
ACGTcount: A:0.46, C:0.11, G:0.04, T:0.40
Consensus pattern (38 bp):
CAAATTCTAATTATTGACTTTTTAAAACAAAATTAAAA
Found at i:98397195 original size:13 final size:13
Alignment explanation
Indices: 98397177--98397201 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
98397167 GTAGATCTTA
98397177 TATATTTATATTT
1 TATATTTATATTT
98397190 TATATTTATATT
1 TATATTTATATT
98397202 AGGAATGATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TATATTTATATTT
Found at i:98404070 original size:51 final size:51
Alignment explanation
Indices: 98403982--98404101 Score: 143
Period size: 51 Copynumber: 2.4 Consensus size: 51
98403972 TTATTCATAT
* *
98403982 AATAAATTTAG-TTAGTAAAATTTAAACATTCTGTCAATTTAGTTTTGATTG
1 AATAAATTTAGCTTA-TAAAATTTAAACATTCTATCAATTTAGTATTGATTG
* ** * * *
98404033 AATAAATTTAGCTTATAATATTTACGCATTTTATCAATTTAGTATTGCTTT
1 AATAAATTTAGCTTATAAAATTTAAACATTCTATCAATTTAGTATTGATTG
*
98404084 AATAAATTTAGCCTATAA
1 AATAAATTTAGCTTATAA
98404102 CATTCAAATA
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
51 56 0.95
52 3 0.05
ACGTcount: A:0.38, C:0.08, G:0.09, T:0.45
Consensus pattern (51 bp):
AATAAATTTAGCTTATAAAATTTAAACATTCTATCAATTTAGTATTGATTG
Found at i:98410730 original size:21 final size:22
Alignment explanation
Indices: 98410704--98410750 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
98410694 CTCTGCTCAA
*
98410704 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
*
98410725 ACTCCACCTGTTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
98410747 ACTC
1 ACTC
98410751 ACTCCTTCTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.36, G:0.19, T:0.23
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:98417439 original size:16 final size:17
Alignment explanation
Indices: 98417418--98417452 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
98417408 AAATATATTA
*
98417418 AATAT-ATTAAAATTTT
1 AATATAATTAAAAGTTT
98417434 AATATAATTAAAAGTTT
1 AATATAATTAAAAGTTT
98417451 AA
1 AA
98417453 AATTTTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (17 bp):
AATATAATTAAAAGTTT
Found at i:98417542 original size:44 final size:42
Alignment explanation
Indices: 98417482--98417587 Score: 140
Period size: 44 Copynumber: 2.5 Consensus size: 42
98417472 TTGAATATAT
** * *
98417482 ATATATTAAAATTTTAAAATTGGTTATACTTAACATTTTTTTTA
1 ATATATTAAAATTTTAAAATTAATTATAATTAACA--ATTTTTA
*
98417526 ATATATTAAAAATTTAAAATTAATTATAATTAACAATTTTTA
1 ATATATTAAAATTTTAAAATTAATTATAATTAACAATTTTTA
98417568 ATATATTTAAAATTTTAAAA
1 ATATA-TTAAAATTTTAAAA
98417588 AACTTTAAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
42 11 0.20
43 13 0.24
44 31 0.56
ACGTcount: A:0.47, C:0.03, G:0.02, T:0.48
Consensus pattern (42 bp):
ATATATTAAAATTTTAAAATTAATTATAATTAACAATTTTTA
Found at i:98417577 original size:19 final size:19
Alignment explanation
Indices: 98417545--98417583 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
98417535 AAATTTAAAA
98417545 TTAATTATAATTAACAATTT
1 TTAATTATAATTAA-AATTT
*
98417565 TTAA-TATATTTAAAATTT
1 TTAATTATAATTAAAATTT
98417583 T
1 T
98417584 AAAAAACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 8 0.44
20 4 0.22
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (19 bp):
TTAATTATAATTAAAATTT
Found at i:98417583 original size:18 final size:18
Alignment explanation
Indices: 98417520--98417583 Score: 56
Period size: 18 Copynumber: 3.2 Consensus size: 18
98417510 CTTAACATTT
*
98417520 TTTTTAATATATTAAAAA
1 TTTTTAATATATTTAAAA
*
98417538 TTTAAAATTAATTATAATTAACAA
1 TTT----TTAA-TATATTTAA-AA
98417562 TTTTTAATATATTTAAAA
1 TTTTTAATATATTTAAAA
98417580 TTTT
1 TTTT
98417584 AAAAAACTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 12
0.71 0.06 0.23
Matches are distributed among these distances:
18 9 0.24
19 8 0.22
20 4 0.11
22 4 0.11
23 7 0.19
24 5 0.14
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (18 bp):
TTTTTAATATATTTAAAA
Found at i:98417585 original size:17 final size:18
Alignment explanation
Indices: 98417537--98417585 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 18
98417527 TATATTAAAA
98417537 ATTTAAAA--TTAATTAT
1 ATTTAAAATTTTAATTAT
*
98417553 AATTAACAATTTTTAA-TAT
1 ATTTAA-AA-TTTTAATTAT
98417572 ATTTAAAATTTTAA
1 ATTTAAAATTTTAA
98417586 AAAACTTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
16 5 0.19
17 8 0.30
18 2 0.07
19 8 0.30
20 4 0.15
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTTAAAATTTTAATTAT
Found at i:98418613 original size:13 final size:12
Alignment explanation
Indices: 98418591--98418629 Score: 51
Period size: 14 Copynumber: 3.0 Consensus size: 12
98418581 CACGTTCAAC
98418591 AAAAAAATAAAA
1 AAAAAAATAAAA
98418603 AAAAAAGATAAAA
1 AAAAAA-ATAAAA
98418616 AGAAAGAAATAAAA
1 A-AAA-AAATAAAA
98418630 TTGACAACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 6 0.25
13 7 0.29
14 9 0.38
15 2 0.08
ACGTcount: A:0.85, C:0.00, G:0.08, T:0.08
Consensus pattern (12 bp):
AAAAAAATAAAA
Found at i:98421075 original size:19 final size:19
Alignment explanation
Indices: 98421051--98421087 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
98421041 TGGCGTCACC
98421051 AAATTTCAAAATATTAGCT
1 AAATTTCAAAATATTAGCT
98421070 AAATTTCAAAATATTAGC
1 AAATTTCAAAATATTAGC
98421088 CTGTTATGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.49, C:0.11, G:0.05, T:0.35
Consensus pattern (19 bp):
AAATTTCAAAATATTAGCT
Found at i:98421190 original size:14 final size:15
Alignment explanation
Indices: 98421166--98421199 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
98421156 TTTTAGTTTT
*
98421166 TTTTTCATTTTTTAG
1 TTTTTCATTTTTAAG
98421181 TTTTTC-TTTTTAAG
1 TTTTTCATTTTTAAG
98421195 TTTTT
1 TTTTT
98421200 TTATTTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.12, C:0.06, G:0.06, T:0.76
Consensus pattern (15 bp):
TTTTTCATTTTTAAG
Found at i:98421285 original size:23 final size:24
Alignment explanation
Indices: 98421235--98421303 Score: 74
Period size: 24 Copynumber: 2.9 Consensus size: 24
98421225 AATAACAAAC
98421235 AAATAAATAAAATAAA-TAAAGTAA--
1 AAATAAATAAAA-AAATTAAA--AATT
*
98421259 AAATAAA-AAAAAACTTAAAAATT
1 AAATAAATAAAAAAATTAAAAATT
98421282 AAATAAATAAAAAAATTAAAAA
1 AAATAAATAAAAAAATTAAAAA
98421304 GAAAAAAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
21 2 0.05
22 2 0.05
23 15 0.38
24 20 0.51
ACGTcount: A:0.77, C:0.01, G:0.01, T:0.20
Consensus pattern (24 bp):
AAATAAATAAAAAAATTAAAAATT
Found at i:98421310 original size:17 final size:17
Alignment explanation
Indices: 98421275--98421313 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
98421265 AAAAAAACTT
*
98421275 AAAAATTAAATAAATAA
1 AAAAATTAAATAAAAAA
98421292 AAAAATTAAA-AAGAAAA
1 AAAAATTAAATAA-AAAA
98421309 AAAAA
1 AAAAA
98421314 GAAAAGGACA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 2 0.10
17 18 0.90
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (17 bp):
AAAAATTAAATAAAAAA
Found at i:98425464 original size:9 final size:9
Alignment explanation
Indices: 98425450--98425481 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
98425440 AACTTGGTGC
98425450 ATTTTGTTT
1 ATTTTGTTT
98425459 ATTTTGTTT
1 ATTTTGTTT
98425468 ATTTTGTTT
1 ATTTTGTTT
98425477 ATTTT
1 ATTTT
98425482 TAATATTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.78
Consensus pattern (9 bp):
ATTTTGTTT
Found at i:98425562 original size:23 final size:23
Alignment explanation
Indices: 98425532--98425580 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
98425522 TGCAACTTGG
98425532 TTTCATAATAATAGCTA-ATATGC
1 TTTCATAATAATAGCTATA-ATGC
*
98425555 TTTCATAATGATAGCTATAATGC
1 TTTCATAATAATAGCTATAATGC
98425578 TTT
1 TTT
98425581 TATCTTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 23 0.96
24 1 0.04
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.43
Consensus pattern (23 bp):
TTTCATAATAATAGCTATAATGC
Found at i:98429924 original size:9 final size:9
Alignment explanation
Indices: 98429910--98429941 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
98429900 AACTTGGTGC
98429910 ATTTTGTTT
1 ATTTTGTTT
98429919 ATTTTGTTT
1 ATTTTGTTT
98429928 ATTTTGTTT
1 ATTTTGTTT
98429937 ATTTT
1 ATTTT
98429942 TAATATTTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.78
Consensus pattern (9 bp):
ATTTTGTTT
Found at i:98437516 original size:14 final size:14
Alignment explanation
Indices: 98437492--98437526 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
98437482 AGCAAAAATA
98437492 ATCATTGTATGATTT
1 ATCA-TGTATGATTT
98437507 ATCATGTATGATTT
1 ATCATGTATGATTT
98437521 A-CATGT
1 ATCATGT
98437527 GATAGATGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 5 0.25
14 11 0.55
15 4 0.20
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.49
Consensus pattern (14 bp):
ATCATGTATGATTT
Found at i:98441969 original size:21 final size:21
Alignment explanation
Indices: 98441943--98441983 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
98441933 ATCTGCTCAA
* *
98441943 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
98441964 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
98441984 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:98446196 original size:18 final size:17
Alignment explanation
Indices: 98446155--98446199 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
98446145 CTTAATTTTG
98446155 TATAAAAATTGTAAAAA
1 TATAAAAATTGTAAAAA
*
98446172 T-TCAAAAATATTTAAAAA
1 TAT-AAAAAT-TGTAAAAA
98446190 TATAAAAATT
1 TATAAAAATT
98446200 CAACTAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
16 1 0.04
17 8 0.33
18 14 0.58
19 1 0.04
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (17 bp):
TATAAAAATTGTAAAAA
Found at i:98450524 original size:45 final size:46
Alignment explanation
Indices: 98450460--98450725 Score: 282
Period size: 45 Copynumber: 5.8 Consensus size: 46
98450450 TGTAACCCGC
98450460 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCG-TCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGATCGTTCGCAT
*
98450505 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GAT--C--GTTCGCAT
* * *
98450555 -C-TCA-CGAACTCGGACTCAACTCAACGAGCTCG-CCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGATCGTTCGCAT
*
98450597 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GAT--C--GTTCGCAT
* * * * *
98450647 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGATCGTTCGCAT
98450690 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGA
98450726 ATGCCCAAAT
Statistics
Matches: 183, Mismatches: 18, Indels: 39
0.76 0.08 0.16
Matches are distributed among these distances:
41 3 0.02
42 5 0.03
43 5 0.03
44 4 0.02
45 62 0.34
46 32 0.17
47 52 0.28
48 4 0.02
49 4 0.02
50 6 0.03
51 6 0.03
ACGTcount: A:0.29, C:0.31, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGATCGTTCGCAT
Found at i:98450579 original size:92 final size:92
Alignment explanation
Indices: 98450468--98450730 Score: 472
Period size: 92 Copynumber: 2.8 Consensus size: 92
98450458 GCCCATAAGT
*
98450468 GAACTCGGACTCAACTCAACGAGCTCGTCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
98450533 GAGCTCGGATGCCTAGTTACATCTCAC
66 GAGCTCGGATGCCTAGTTACATCTCAC
*
98450560 GAACTCGGACTCAACTCAACGAGCTCGCCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
98450625 GAGCTCGGATGCCTAGTTACATCTCAC
66 GAGCTCGGATGCCTAGTTACATCTCAC
* *
98450652 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCG-ACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
98450717 CGAGCTCGAATGCC
65 CGAGCTCGGATGCC
98450731 CAAATATTCC
Statistics
Matches: 165, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
92 117 0.71
93 48 0.29
ACGTcount: A:0.29, C:0.32, G:0.19, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACGAGCTCGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATCTCAC
Found at i:98450582 original size:47 final size:47
Alignment explanation
Indices: 98450513--98450674 Score: 219
Period size: 47 Copynumber: 3.5 Consensus size: 47
98450503 ATCCATAAGT
98450513 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
* * *
98450560 GAACTCGGACTCAACTCAACGAGCTC----GCC--GTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-C-TCA-C
98450605 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
98450652 GAACTCGGACTCAACTCAACGAG
1 GAACTCGGACTCAACTCAACGAG
98450675 TTCGAACATT
Statistics
Matches: 99, Mismatches: 6, Indels: 20
0.79 0.05 0.16
Matches are distributed among these distances:
41 3 0.03
42 3 0.03
43 4 0.04
44 2 0.02
45 26 0.26
47 49 0.49
48 2 0.02
49 4 0.04
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.32, G:0.20, T:0.20
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
Done.