Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 291 of 295
Found at i:98451325 original size:19 final size:18
Alignment explanation
Indices: 98451284--98451326 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
98451274 AGCAACTCAT
98451284 AATTT-CAACTATTTCAC
1 AATTTACAACTATTTCAC
*
98451301 ACATTTACAACTCATTTTAC
1 A-ATTTACAACT-ATTTCAC
98451321 AATTTA
1 AATTTA
98451327 GCAATCTAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 1 0.05
18 4 0.18
19 10 0.45
20 7 0.32
ACGTcount: A:0.37, C:0.21, G:0.00, T:0.42
Consensus pattern (18 bp):
AATTTACAACTATTTCAC
Found at i:98465769 original size:27 final size:27
Alignment explanation
Indices: 98465731--98465787 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
98465721 ATACGGATGT
98465731 TTTCGGATCTAGTAGCTGATGCCTTCA
1 TTTCGGATCTAGTAGCTGATGCCTTCA
98465758 TTTCGGATCTAGTAGCTGATGCCTTCA
1 TTTCGGATCTAGTAGCTGATGCCTTCA
98465785 TTT
1 TTT
98465788 TGTAGGCTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.40
Consensus pattern (27 bp):
TTTCGGATCTAGTAGCTGATGCCTTCA
Found at i:98467356 original size:20 final size:20
Alignment explanation
Indices: 98467331--98467392 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 20
98467321 CGGTTACCAG
98467331 TTATCTTACTATTTGTAGTC
1 TTATCTTACTATTTGTAGTC
* * *
98467351 TTATC-T-C-GTTTGAAG-A
1 TTATCTTACTATTTGTAGTC
*
98467367 GTATCTTACTATTTGTAGTC
1 TTATCTTACTATTTGTAGTC
98467387 TTATCT
1 TTATCT
98467393 CGTTTGAAGA
Statistics
Matches: 30, Mismatches: 8, Indels: 8
0.65 0.17 0.17
Matches are distributed among these distances:
16 4 0.13
17 7 0.23
18 2 0.07
19 7 0.23
20 10 0.33
ACGTcount: A:0.21, C:0.15, G:0.13, T:0.52
Consensus pattern (20 bp):
TTATCTTACTATTTGTAGTC
Found at i:98467372 original size:36 final size:36
Alignment explanation
Indices: 98467332--98467403 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
98467322 GGTTACCAGT
98467332 TATCTTACTATTTGTAGTCTTATCTCGTTTGAAGAG
1 TATCTTACTATTTGTAGTCTTATCTCGTTTGAAGAG
98467368 TATCTTACTATTTGTAGTCTTATCTCGTTTGAAGAG
1 TATCTTACTATTTGTAGTCTTATCTCGTTTGAAGAG
98467404 AGTTAGGTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.22, C:0.14, G:0.17, T:0.47
Consensus pattern (36 bp):
TATCTTACTATTTGTAGTCTTATCTCGTTTGAAGAG
Found at i:98472998 original size:83 final size:83
Alignment explanation
Indices: 98472878--98473044 Score: 325
Period size: 83 Copynumber: 2.0 Consensus size: 83
98472868 TAGAACCTTT
98472878 AGAGGATTATACCCCAAACATAAAGAGACCCATACGCTGGTTAAATAAATTTGATTGATGCACTT
1 AGAGGATTATACCCCAAACATAAAGAGACCCATACGCTGGTTAAATAAATTTGATTGATGCACTT
98472943 AAATATCTCTTTGTGTGC
66 AAATATCTCTTTGTGTGC
98472961 AGAGGATTATACCCCAAACATAAAGAGACCCATACGCTGGTTAAATAAATTTGATTGATGCACTT
1 AGAGGATTATACCCCAAACATAAAGAGACCCATACGCTGGTTAAATAAATTTGATTGATGCACTT
*
98473026 AAATATCTTTTTGTGTGC
66 AAATATCTCTTTGTGTGC
98473044 A
1 A
98473045 CATAAAGAAT
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 83 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (83 bp):
AGAGGATTATACCCCAAACATAAAGAGACCCATACGCTGGTTAAATAAATTTGATTGATGCACTT
AAATATCTCTTTGTGTGC
Found at i:98483921 original size:83 final size:82
Alignment explanation
Indices: 98483765--98483921 Score: 239
Period size: 83 Copynumber: 1.9 Consensus size: 82
98483755 TAGAGGTTAT
98483765 CCCCTAAAATAAAGAGACCATACAGCTGGTTAAATAAATTTGATTGATGCACTTAAATATCATCT
1 CCCCTAAAATAAAGAGACCATACAGCTGGTTAAATAAATTTGATTGATGCACTTAAATATCATCT
98483830 TTGTGTGCAGAGATATA
66 TTGTGTGCAGAGATATA
*
98483847 CCCC-AAACATAAAGAGACCCATAC-GCTGGTTAAATAAACTTTTATTGATGCAGCTTAAATATC
1 CCCCTAAA-ATAAAGAGA-CCATACAGCTGGTTAAATAAA-TTTGATTGATGCA-CTTAAATATC
*
98483910 -TTTTTGTGTGCA
62 ATCTTTGTGTGCA
98483922 CATAAAGAAT
Statistics
Matches: 69, Mismatches: 2, Indels: 7
0.88 0.03 0.09
Matches are distributed among these distances:
81 3 0.04
82 27 0.39
83 29 0.42
84 10 0.14
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (82 bp):
CCCCTAAAATAAAGAGACCATACAGCTGGTTAAATAAATTTGATTGATGCACTTAAATATCATCT
TTGTGTGCAGAGATATA
Found at i:98487522 original size:27 final size:27
Alignment explanation
Indices: 98487484--98487540 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
98487474 ATACGGATGT
98487484 TTTCGGATCTAGTAGCTGATGCCTTCA
1 TTTCGGATCTAGTAGCTGATGCCTTCA
98487511 TTTCGGATCTAGTAGCTGATGCCTTCA
1 TTTCGGATCTAGTAGCTGATGCCTTCA
98487538 TTT
1 TTT
98487541 TGTAGGCTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.18, C:0.21, G:0.21, T:0.40
Consensus pattern (27 bp):
TTTCGGATCTAGTAGCTGATGCCTTCA
Found at i:98489108 original size:20 final size:20
Alignment explanation
Indices: 98489083--98489144 Score: 60
Period size: 20 Copynumber: 3.3 Consensus size: 20
98489073 CGGTTACCAG
98489083 TTATCTTACTATTTGTAGTC
1 TTATCTTACTATTTGTAGTC
* * *
98489103 TTATC-T-C-GTTTGAAG-A
1 TTATCTTACTATTTGTAGTC
*
98489119 GTATCTTACTATTTGTAGTC
1 TTATCTTACTATTTGTAGTC
98489139 TTATCT
1 TTATCT
98489145 CGTTTGAAGA
Statistics
Matches: 30, Mismatches: 8, Indels: 8
0.65 0.17 0.17
Matches are distributed among these distances:
16 4 0.13
17 7 0.23
18 2 0.07
19 7 0.23
20 10 0.33
ACGTcount: A:0.21, C:0.15, G:0.13, T:0.52
Consensus pattern (20 bp):
TTATCTTACTATTTGTAGTC
Found at i:98489124 original size:36 final size:36
Alignment explanation
Indices: 98489084--98489155 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
98489074 GGTTACCAGT
98489084 TATCTTACTATTTGTAGTCTTATCTCGTTTGAAGAG
1 TATCTTACTATTTGTAGTCTTATCTCGTTTGAAGAG
98489120 TATCTTACTATTTGTAGTCTTATCTCGTTTGAAGAG
1 TATCTTACTATTTGTAGTCTTATCTCGTTTGAAGAG
98489156 AGTTAGGTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.22, C:0.14, G:0.17, T:0.47
Consensus pattern (36 bp):
TATCTTACTATTTGTAGTCTTATCTCGTTTGAAGAG
Found at i:98494748 original size:83 final size:83
Alignment explanation
Indices: 98494628--98494794 Score: 325
Period size: 83 Copynumber: 2.0 Consensus size: 83
98494618 TAGAACCTTT
98494628 AGAGGATTATACCCCAAACATAAAGAGACCCATACGCTGGTTAAATAAATTTGATTGATGCACTT
1 AGAGGATTATACCCCAAACATAAAGAGACCCATACGCTGGTTAAATAAATTTGATTGATGCACTT
98494693 AAATATCTCTTTGTGTGC
66 AAATATCTCTTTGTGTGC
98494711 AGAGGATTATACCCCAAACATAAAGAGACCCATACGCTGGTTAAATAAATTTGATTGATGCACTT
1 AGAGGATTATACCCCAAACATAAAGAGACCCATACGCTGGTTAAATAAATTTGATTGATGCACTT
*
98494776 AAATATCTTTTTGTGTGC
66 AAATATCTCTTTGTGTGC
98494794 A
1 A
98494795 CATAAAGAAT
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 83 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (83 bp):
AGAGGATTATACCCCAAACATAAAGAGACCCATACGCTGGTTAAATAAATTTGATTGATGCACTT
AAATATCTCTTTGTGTGC
Found at i:98510247 original size:59 final size:59
Alignment explanation
Indices: 98510180--98510298 Score: 220
Period size: 59 Copynumber: 2.0 Consensus size: 59
98510170 TTGCCAATGG
*
98510180 TACATAGAAACAGGGGTGAAGTCAGATATTTTTTAAGGAGATCAGAATTAAATTGTGAT
1 TACATAGAAACAGGGGTGAAGTCAAATATTTTTTAAGGAGATCAGAATTAAATTGTGAT
*
98510239 TACATAGAAACAGGGGTGAAGTCAAATATTTTTTAAGGGGATCAGAATTAAATTGTGAT
1 TACATAGAAACAGGGGTGAAGTCAAATATTTTTTAAGGAGATCAGAATTAAATTGTGAT
98510298 T
1 T
98510299 TTTACGATAG
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.31
Consensus pattern (59 bp):
TACATAGAAACAGGGGTGAAGTCAAATATTTTTTAAGGAGATCAGAATTAAATTGTGAT
Found at i:98510671 original size:166 final size:164
Alignment explanation
Indices: 98510394--98510718 Score: 447
Period size: 166 Copynumber: 2.0 Consensus size: 164
98510384 TTAAGGGGGG
* * * * * * *
98510394 AAAATGTTATTTTACCTTCAAAAGCATAGAAAAATTTCTATTTTAGAGGGGGCTAGCCCCTACCA
1 AAAATGTTATTTTACCTTCAAAAGCAAAGAAAAATTTCCATTTTAAAGGAGACTAACACCTACCA
98510459 ACTCCTCTAACTATGCCCCTACATGGGAATTCAATTTACCTTATTCAACTAATACTAAATTTACA
66 ACTCCTCTAACTATGCCCCTACATGGGAATTCAATTTACCTTATTCAACTAATACTAAATTTACA
*
98510524 TATAAACTGAATGTTTAATATT-TTTAAAGGGAC
131 TATAAACTAAATGTTTAATATTATTTAAAGGGAC
* *
98510557 AAAATGTTATTTTACCTTTAAAACGTAAATGAAAAATTTTCCATTTTAAAGGAGACTAACACCTA
1 AAAATGTTATTTTACCTTCAAAA-GCAAA-GAAAAA-TTTCCATTTTAAAGGAGACTAACACCTA
* ** * * *
98510622 CCAA-TTCTCCTAACTATGCCTTTACATGGGAATTTAATTTACTTTATTCAACTAATATTAAATT
63 CCAACTCCT-CTAACTATGCCCCTACATGGGAATTCAATTTACCTTATTCAACTAATACTAAATT
*
98510686 TACATATAAGCTAAATGTTTAATATTATTTAAA
127 TACATATAAACTAAATGTTTAATATTATTTAAA
98510719 AATTTCATAC
Statistics
Matches: 140, Mismatches: 17, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
163 22 0.16
164 3 0.02
165 9 0.06
166 100 0.71
167 6 0.04
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.36
Consensus pattern (164 bp):
AAAATGTTATTTTACCTTCAAAAGCAAAGAAAAATTTCCATTTTAAAGGAGACTAACACCTACCA
ACTCCTCTAACTATGCCCCTACATGGGAATTCAATTTACCTTATTCAACTAATACTAAATTTACA
TATAAACTAAATGTTTAATATTATTTAAAGGGAC
Found at i:98515057 original size:21 final size:21
Alignment explanation
Indices: 98515033--98515079 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
98515023 AGTTAAGCTC
98515033 ATTAAGTTTAGTGTTAATAAT-
1 ATTAAGTTTAG-GTTAATAATG
** *
98515054 ATTATTTTTAGGTTTATAATG
1 ATTAAGTTTAGGTTAATAATG
98515075 ATTAA
1 ATTAA
98515080 TAGAGAAAGT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.36, C:0.00, G:0.13, T:0.51
Consensus pattern (21 bp):
ATTAAGTTTAGGTTAATAATG
Found at i:98517448 original size:27 final size:27
Alignment explanation
Indices: 98517416--98517470 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
98517406 TCCTAATATT
*
98517416 TATTTTAGTATATAATA-TATAATATAA
1 TATTTT-GTATATAAAATTATAATATAA
* *
98517443 TATTTTTTATATAAAATTATACTATAA
1 TATTTTGTATATAAAATTATAATATAA
98517470 T
1 T
98517471 TTAAAATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 8 0.33
27 16 0.67
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (27 bp):
TATTTTGTATATAAAATTATAATATAA
Found at i:98517520 original size:44 final size:45
Alignment explanation
Indices: 98517409--98517526 Score: 116
Period size: 46 Copynumber: 2.6 Consensus size: 45
98517399 CCCACCGTCC
* * * *
98517409 TAATATTTATTTTAGTATATAATATATAATATAATATTTTTTATA
1 TAATATTTATTATAGTATAAAATATATAATATAATAATTTATATA
* * * * *
98517454 TAAAATTATACTATAATTTAAAATATATGATAATAA-AATTTATAT-
1 TAATATT-TATTATAGTATAAAATATATAAT-ATAATAATTTATATA
98517499 TAATATTTATTATAGTATAAAA-ATATAA
1 TAATATTTATTATAGTATAAAATATATAA
98517527 AAAATAAAAA
Statistics
Matches: 57, Mismatches: 14, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
43 5 0.09
44 12 0.21
45 12 0.21
46 24 0.42
47 4 0.07
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (45 bp):
TAATATTTATTATAGTATAAAATATATAATATAATAATTTATATA
Found at i:98518417 original size:23 final size:22
Alignment explanation
Indices: 98518374--98518421 Score: 53
Period size: 23 Copynumber: 2.1 Consensus size: 22
98518364 ATAAAAGTAT
*
98518374 TAAAATAAAATTTTAGTTAATAG
1 TAAAATAAAATTTTAGCTAAT-G
*
98518397 TAAATTAAATATTTTA-CTAATG
1 TAAAATAAA-ATTTTAGCTAATG
98518419 TAA
1 TAA
98518422 TTAGTTCATG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 4 0.18
23 12 0.55
24 6 0.27
ACGTcount: A:0.50, C:0.02, G:0.06, T:0.42
Consensus pattern (22 bp):
TAAAATAAAATTTTAGCTAATG
Found at i:98525854 original size:9 final size:11
Alignment explanation
Indices: 98525825--98525849 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
98525815 CCATGAAAAG
98525825 TTATAAAATTA
1 TTATAAAATTA
98525836 TTATAAAATTA
1 TTATAAAATTA
98525847 TTA
1 TTA
98525850 AAATTTGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TTATAAAATTA
Found at i:98531496 original size:20 final size:20
Alignment explanation
Indices: 98531467--98531506 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
98531457 TATGATCCTT
*
98531467 TTTATTTTAGTCACTTTAAA
1 TTTATGTTAGTCACTTTAAA
98531487 TTTATGTTAGTCACTTTAAA
1 TTTATGTTAGTCACTTTAAA
98531507 ATTAAGATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.10, G:0.07, T:0.53
Consensus pattern (20 bp):
TTTATGTTAGTCACTTTAAA
Found at i:98532551 original size:29 final size:30
Alignment explanation
Indices: 98532513--98532583 Score: 76
Period size: 29 Copynumber: 2.4 Consensus size: 30
98532503 GCAATTCAAG
*
98532513 TTTACGTATATAATT-ATATCAAATCAAAA
1 TTTACATATATAATTAATATCAAATCAAAA
* * *
98532542 TTTACATATAAAATTACATATTAAATCATAA
1 TTTACATATATAATTA-ATATCAAATCAAAA
98532573 -TT-CATATATAA
1 TTTACATATATAA
98532584 ATTTGATATT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
29 21 0.60
30 2 0.06
31 12 0.34
ACGTcount: A:0.49, C:0.10, G:0.01, T:0.39
Consensus pattern (30 bp):
TTTACATATATAATTAATATCAAATCAAAA
Found at i:98533086 original size:16 final size:16
Alignment explanation
Indices: 98533065--98533100 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
98533055 TTGAATAAAT
98533065 ATTTTAAAATGATTTA
1 ATTTTAAAATGATTTA
*
98533081 ATTTTAAAGTGATTTA
1 ATTTTAAAATGATTTA
98533097 ATTT
1 ATTT
98533101 CTCATAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (16 bp):
ATTTTAAAATGATTTA
Found at i:98533458 original size:4 final size:4
Alignment explanation
Indices: 98533449--98533473 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
98533439 TAAACCTTTC
98533449 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
98533474 TTTTGTCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:98534465 original size:14 final size:15
Alignment explanation
Indices: 98534434--98534470 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
98534424 ATTTTTAAAA
98534434 TTTATAATATTTTAT
1 TTTATAATATTTTAT
98534449 TTTATAATATTTT-T
1 TTTATAATATTTTAT
98534463 TTTATAAT
1 TTTATAAT
98534471 TTAATTTAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTATAATATTTTAT
Found at i:98539997 original size:22 final size:21
Alignment explanation
Indices: 98539972--98540014 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
98539962 ACAAGAATCA
* *
98539972 AATTAAGTACTAATTTTTATTT
1 AATTAA-TAATAAATTTTATTT
*
98539994 AATTTATAATAAATTTTATTT
1 AATTAATAATAAATTTTATTT
98540015 TTTACAATGT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (21 bp):
AATTAATAATAAATTTTATTT
Found at i:98547484 original size:19 final size:20
Alignment explanation
Indices: 98547449--98547498 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
98547439 AGAAAATATA
98547449 CAAAATAATTT-TCAAAAATT
1 CAAAAT-ATTTATCAAAAATT
98547469 CAAAATATTTAT-AAAAATT
1 CAAAATATTTATCAAAAATT
*
98547488 CTAAA-ATTTAT
1 CAAAATATTTAT
98547499 TTTTTTTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 6 0.21
19 15 0.54
20 7 0.25
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (20 bp):
CAAAATATTTATCAAAAATT
Found at i:98550492 original size:2 final size:2
Alignment explanation
Indices: 98550485--98550516 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
98550475 TTAAGCAAAC
98550485 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
98550517 AATCAAGGCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:98550849 original size:18 final size:18
Alignment explanation
Indices: 98550826--98550869 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
98550816 TATTTTTTTA
98550826 TATTTAATTTTAATATTT
1 TATTTAATTTTAATATTT
* *
98550844 TATTT-ATTTTACTCTTT
1 TATTTAATTTTAATATTT
98550861 TAATTTAAT
1 T-ATTTAAT
98550870 AATTTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 11 0.50
18 9 0.41
19 2 0.09
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.66
Consensus pattern (18 bp):
TATTTAATTTTAATATTT
Found at i:98551792 original size:30 final size:30
Alignment explanation
Indices: 98551745--98551828 Score: 91
Period size: 31 Copynumber: 2.8 Consensus size: 30
98551735 TCAAATTTTA
98551745 AAAT-TATACAT-AAACTTTGATTTGGTGC
1 AAATATATACATGAAACTTTGATTTGGTGC
* * **
98551773 AATTATATACGTGAAACTTTGATTGTGGTTT
1 AAATATATACATGAAACTTTGATT-TGGTGC
* *
98551804 AAATGTATACATGAAACTTTAATTT
1 AAATATATACATGAAACTTTGATTT
98551829 TGATTCGATC
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
28 3 0.07
29 6 0.13
30 12 0.27
31 24 0.53
ACGTcount: A:0.36, C:0.08, G:0.14, T:0.42
Consensus pattern (30 bp):
AAATATATACATGAAACTTTGATTTGGTGC
Found at i:98555123 original size:13 final size:13
Alignment explanation
Indices: 98555085--98555129 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 13
98555075 TCTTCACTCC
98555085 AACCAACCCACTA
1 AACCAACCCACTA
98555098 AACC-ACCC-C--
1 AACCAACCCACTA
98555107 AACCAACCCACTA
1 AACCAACCCACTA
*
98555120 AACCATCCCA
1 AACCAACCCA
98555130 ACCACTCCAC
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
9 4 0.15
10 4 0.15
11 2 0.07
12 4 0.15
13 13 0.48
ACGTcount: A:0.42, C:0.51, G:0.00, T:0.07
Consensus pattern (13 bp):
AACCAACCCACTA
Found at i:98555140 original size:22 final size:22
Alignment explanation
Indices: 98555083--98555133 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
98555073 TATCTTCACT
98555083 CCAACCAACCCACTAAACCACC
1 CCAACCAACCCACTAAACCACC
*
98555105 CCAACCAACCCACTAAACCATC
1 CCAACCAACCCACTAAACCACC
98555127 CCAACCA
1 CCAACCA
98555134 CTCCACTTGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.41, C:0.53, G:0.00, T:0.06
Consensus pattern (22 bp):
CCAACCAACCCACTAAACCACC
Found at i:98568445 original size:206 final size:205
Alignment explanation
Indices: 98568086--98568550 Score: 779
Period size: 206 Copynumber: 2.3 Consensus size: 205
98568076 GATATGGCTA
* *
98568086 AAGCAA-ATCCAAGATGGTTTGGCATCCTTGTGCTTACAAGGACAAATCGAAGACATAGCTGATT
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGACAAATCGAAGACATAGCTGATA
*
98568150 TAGATTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTACTGTCAGAGAA
66 TAGATTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTACTATCAGAGAA
* * *
98568215 CAAGTCGAAGTCTGGCATCTCCATTTCGACGGAGAGCAGATACATAGCAGATCTGGCCTTCAGAT
131 CAAGTCAAAGTCTGGCATCTCCATTTCGACGAAGAGCAGATACATAGCAGATCTGGCATTCAGAT
**
98568280 GTTTATATTG
196 GTTTATACCG
*
98568290 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGTTGAT
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGA-CAAATCGAAGACATAGCTGAT
* *
98568355 ATAGCTTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTATTATCAGAGA
65 ATAGATTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTACTATCAGAGA
* *
98568420 ACAAGTCAAAGTCTGGCATCTCCATTTTGACGAAGAGCAGATACATAGTAGATCTGGCATTCAGA
130 ACAAGTCAAAGTCTGGCATCTCCATTTCGACGAAGAGCAGATACATAGCAGATCTGGCATTCAGA
98568485 TGTTTATACCG
195 TGTTTATACCG
*
98568496 AAGCAAGATCCAAGATGATTTGGCTTCCTTGTGCTTACAAGGAACAAATCGAAGA
1 AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGG-ACAAATCGAAGA
98568551 AGCAGATTTG
Statistics
Matches: 244, Mismatches: 14, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
204 6 0.02
205 35 0.14
206 202 0.83
207 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (205 bp):
AAGCAAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGACAAATCGAAGACATAGCTGATA
TAGATTTCGCGTGCTTACGCTAAAGCAAGTCTAAGATGATTTGGCATCTCTGTACTATCAGAGAA
CAAGTCAAAGTCTGGCATCTCCATTTCGACGAAGAGCAGATACATAGCAGATCTGGCATTCAGAT
GTTTATACCG
Found at i:98568734 original size:45 final size:45
Alignment explanation
Indices: 98568638--98568734 Score: 142
Period size: 45 Copynumber: 2.2 Consensus size: 45
98568628 AGATTGACGA
* * *
98568638 AGCAAATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGAT
1 AGCAGATTTGGCGTCTCTGTATTAGACGGGAAGCAGATCAAAGAT
*
98568683 -GACAGATTTGGCGTCTCTGTATTAGACGGGAAGCGGATCAAAGAT
1 AG-CAGATTTGGCGTCTCTGTATTAGACGGGAAGCAGATCAAAGAT
98568728 AGCAGAT
1 AGCAGAT
98568735 ATCGCTTTCC
Statistics
Matches: 46, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
44 1 0.02
45 44 0.96
46 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (45 bp):
AGCAGATTTGGCGTCTCTGTATTAGACGGGAAGCAGATCAAAGAT
Found at i:98568947 original size:15 final size:15
Alignment explanation
Indices: 98568920--98568965 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
98568910 TTTTGCCCGG
98568920 GCTAAAAAGCCCAACA
1 GCTAAAAA-CCCAACA
*
98568936 TCTAAAAACCCAACA
1 GCTAAAAACCCAACA
**
98568951 GCCCAAAACCCAACA
1 GCTAAAAACCCAACA
98568966 ACCTCCAAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
15 19 0.73
16 7 0.27
ACGTcount: A:0.50, C:0.37, G:0.07, T:0.07
Consensus pattern (15 bp):
GCTAAAAACCCAACA
Found at i:98568986 original size:17 final size:17
Alignment explanation
Indices: 98568940--98568980 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 17
98568930 CCAACATCTA
*
98568940 AAAACCCAAC-AGC-CC
1 AAAACCCAACAACCTCC
98568955 AAAACCCAACAACCTCC
1 AAAACCCAACAACCTCC
*
98568972 AAAGCCCAA
1 AAAACCCAA
98568981 TCACCTAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 10 0.45
16 2 0.09
17 10 0.45
ACGTcount: A:0.49, C:0.44, G:0.05, T:0.02
Consensus pattern (17 bp):
AAAACCCAACAACCTCC
Found at i:98569531 original size:19 final size:18
Alignment explanation
Indices: 98569494--98569535 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
98569484 GGAGAGAGTG
*
98569494 TTATTTTTAATATTGTTA
1 TTATTTTTAATATTATTA
*
98569512 TTATTTTCTATTATTATTA
1 TTATTTT-TAATATTATTA
98569531 TTATT
1 TTATT
98569536 ACTAATACCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.69
Consensus pattern (18 bp):
TTATTTTTAATATTATTA
Found at i:98569594 original size:33 final size:39
Alignment explanation
Indices: 98569520--98569601 Score: 104
Period size: 33 Copynumber: 2.3 Consensus size: 39
98569510 TATTATTTTC
*
98569520 TATTATTATTATTATTACTAATACCACTATTATCATCAT
1 TATTACTATTATTATTACTAATACCACTATTATCATCAT
*
98569559 TATTACTATTA-TATTA-TAATA-C-CT-TT-TCATTAT
1 TATTACTATTATTATTACTAATACCACTATTATCATCAT
98569592 TATTACTATT
1 TATTACTATT
98569602 GTGTTTTTAC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
33 16 0.39
34 2 0.05
35 2 0.05
36 1 0.02
37 5 0.12
38 5 0.12
39 10 0.24
ACGTcount: A:0.34, C:0.13, G:0.00, T:0.52
Consensus pattern (39 bp):
TATTACTATTATTATTACTAATACCACTATTATCATCAT
Found at i:98569631 original size:23 final size:23
Alignment explanation
Indices: 98569547--98569631 Score: 64
Period size: 23 Copynumber: 3.6 Consensus size: 23
98569537 CTAATACCAC
* *
98569547 TATTATCATCATTATTACTATTA-
1 TATTATTAT-ATTTTTACTATTAT
* * *
98569570 TATTATAATACCTTTTCATTATTAT
1 TATTATTATA--TTTTTACTATTAT
* * *
98569595 TACTATTGTGTTTTTACTATTAT
1 TATTATTATATTTTTACTATTAT
98569618 TATTATTATATTTT
1 TATTATTATATTTT
98569632 CTTTTTTTGT
Statistics
Matches: 46, Mismatches: 13, Indels: 6
0.71 0.20 0.09
Matches are distributed among these distances:
22 1 0.02
23 30 0.65
24 9 0.20
25 6 0.13
ACGTcount: A:0.29, C:0.09, G:0.02, T:0.59
Consensus pattern (23 bp):
TATTATTATATTTTTACTATTAT
Found at i:98571419 original size:13 final size:13
Alignment explanation
Indices: 98571401--98571446 Score: 67
Period size: 13 Copynumber: 3.5 Consensus size: 13
98571391 CCTCGAATCC
98571401 TAAACCCTAAACT
1 TAAACCCTAAACT
98571414 TAAA-CCTCAAACT
1 TAAACCCT-AAACT
98571427 TAAACCCTAAACCT
1 TAAACCCTAAA-CT
98571441 TAAACC
1 TAAACC
98571447 TTGAACCTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
12 3 0.10
13 16 0.53
14 11 0.37
ACGTcount: A:0.46, C:0.33, G:0.00, T:0.22
Consensus pattern (13 bp):
TAAACCCTAAACT
Found at i:98571482 original size:7 final size:7
Alignment explanation
Indices: 98571401--98571480 Score: 83
Period size: 7 Copynumber: 11.7 Consensus size: 7
98571391 CCTCGAATCC
*
98571401 TAAACCC
1 TAAACCT
98571408 TAAA-CT
1 TAAACCT
98571414 TAAACCT
1 TAAACCT
*
98571421 CAAA-CT
1 TAAACCT
*
98571427 TAAACCC
1 TAAACCT
98571434 TAAACCT
1 TAAACCT
98571441 TAAACCT
1 TAAACCT
*
98571448 TGAACCT
1 TAAACCT
*
98571455 TGAACCT
1 TAAACCT
98571462 TAAACCT
1 TAAACCT
* *
98571469 TGAACAT
1 TAAACCT
98571476 TAAAC
1 TAAAC
98571481 ATCAATCCAT
Statistics
Matches: 61, Mismatches: 10, Indels: 4
0.81 0.13 0.05
Matches are distributed among these distances:
6 10 0.16
7 51 0.84
ACGTcount: A:0.42, C:0.29, G:0.04, T:0.25
Consensus pattern (7 bp):
TAAACCT
Found at i:98574540 original size:25 final size:25
Alignment explanation
Indices: 98574512--98574561 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
98574502 ACAAAGGATA
98574512 ATAACAATTAACATTGCAAAATATG
1 ATAACAATTAACATTGCAAAATATG
98574537 ATAACAATTAACATTGCAAAATATG
1 ATAACAATTAACATTGCAAAATATG
98574562 CTCCATTGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.52, C:0.12, G:0.08, T:0.28
Consensus pattern (25 bp):
ATAACAATTAACATTGCAAAATATG
Found at i:98581658 original size:21 final size:21
Alignment explanation
Indices: 98581632--98581672 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
98581622 AGACGAGCAA
* *
98581632 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
98581653 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
98581673 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:98589306 original size:26 final size:26
Alignment explanation
Indices: 98589256--98589320 Score: 71
Period size: 24 Copynumber: 2.5 Consensus size: 26
98589246 TGGTACTAAG
*
98589256 AAAATATATATATACAGTATAGTATTTA
1 AAAATATATACATACAGTATAGTA--TA
*
98589284 AAAATATATACATA-AG-ATGGTATA
1 AAAATATATACATACAGTATAGTATA
*
98589308 AAAATATGTACAT
1 AAAATATATACAT
98589321 GGAAATGTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 14 0.41
26 5 0.15
27 2 0.06
28 13 0.38
ACGTcount: A:0.52, C:0.05, G:0.09, T:0.34
Consensus pattern (26 bp):
AAAATATATACATACAGTATAGTATA
Found at i:98589855 original size:121 final size:120
Alignment explanation
Indices: 98589680--98589915 Score: 302
Period size: 118 Copynumber: 2.0 Consensus size: 120
98589670 AAAAAGTAAA
* * * *
98589680 TATAATAAAATGATATTAAAATAAAGTCATTAAAAACAGTAATATATGTATATATACAT-CTAAT
1 TATAATAAAATAATATTAAAATAAAGTCAATAAAAACAGTAATACATATATATATACATAC--AT
* * *
98589744 -AAGAATATATAGTAATGTTA-ATGATAATAATAATAATAATATTGAAATATAAAAGCTAT
64 GAAG-ATATACACTAATG-TACA--ATAATAATAATAATAATATTGAAATACAAAAGCTAT
* *
98589803 TATAATAAAA-AATATTAAAATAAAGT-AATAAAAACATTACTACATATATATATACATACATGA
1 TATAATAAAATAATATTAAAATAAAGTCAATAAAAACAGTAATACATATATATATACATACATGA
98589866 AGATATACACTAATGTACAATAATAATAATAATAATATTGAAATACAAAA
66 AGATATACACTAATGTACAATAATAATAATAATAATATTGAAATACAAAA
98589916 AATGTAATAT
Statistics
Matches: 101, Mismatches: 9, Indels: 11
0.83 0.07 0.09
Matches are distributed among these distances:
118 30 0.30
119 2 0.02
120 14 0.14
121 29 0.29
122 16 0.16
123 10 0.10
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.32
Consensus pattern (120 bp):
TATAATAAAATAATATTAAAATAAAGTCAATAAAAACAGTAATACATATATATATACATACATGA
AGATATACACTAATGTACAATAATAATAATAATAATATTGAAATACAAAAGCTAT
Found at i:98590398 original size:11 final size:12
Alignment explanation
Indices: 98590384--98590419 Score: 58
Period size: 11 Copynumber: 3.2 Consensus size: 12
98590374 AAAAAAAAAA
98590384 GAAGAGAG-AGG
1 GAAGAGAGAAGG
98590395 GAAGAGAGAAGG
1 GAAGAGAGAAGG
98590407 G-AGAGAGAAGG
1 GAAGAGAGAAGG
98590418 GA
1 GA
98590420 GGGGGGAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 19 0.83
12 4 0.17
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (12 bp):
GAAGAGAGAAGG
Found at i:98596253 original size:20 final size:20
Alignment explanation
Indices: 98596215--98596251 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
98596205 GGTCCAATTC
98596215 TTTTCATATTTTAGATTTAA
1 TTTTCATATTTTAGATTTAA
*
98596235 TTTTTATATTTTA-ATTT
1 TTTTCATATTTTAGATTT
98596252 TATATAATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.68
Consensus pattern (20 bp):
TTTTCATATTTTAGATTTAA
Found at i:98608235 original size:34 final size:34
Alignment explanation
Indices: 98608197--98608264 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
98608187 CATAAGTAGG
98608197 AATTGACAGTACATCATATTTGATAAGAATTTCT
1 AATTGACAGTACATCATATTTGATAAGAATTTCT
98608231 AATTGACAGTACATCATATTTGATAAGAATTTCT
1 AATTGACAGTACATCATATTTGATAAGAATTTCT
98608265 TTACTCTATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (34 bp):
AATTGACAGTACATCATATTTGATAAGAATTTCT
Found at i:98609353 original size:2 final size:2
Alignment explanation
Indices: 98609346--98609372 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
98609336 ACCAATCTGA
98609346 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
98609373 TTTGCTTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:98619163 original size:14 final size:14
Alignment explanation
Indices: 98619144--98619173 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
98619134 ACTTTCCAAA
*
98619144 CTCTGCTCTCTCCC
1 CTCTGCCCTCTCCC
98619158 CTCTGCCCTCTCCC
1 CTCTGCCCTCTCCC
98619172 CT
1 CT
98619174 ATTTCTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.00, C:0.60, G:0.07, T:0.33
Consensus pattern (14 bp):
CTCTGCCCTCTCCC
Found at i:98621248 original size:2 final size:2
Alignment explanation
Indices: 98621241--98621269 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
98621231 CTATTAGTAC
98621241 AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
98621270 TACTCGGGCT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:98622695 original size:18 final size:18
Alignment explanation
Indices: 98622674--98622708 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
98622664 ATATATTTCA
*
98622674 TTTTTTATATAAATTTAT
1 TTTTTTAAATAAATTTAT
*
98622692 TTTTTTAAATCAATTTA
1 TTTTTTAAATAAATTTA
98622709 GCTCAATTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTTTTAAATAAATTTAT
Found at i:98626877 original size:21 final size:21
Alignment explanation
Indices: 98626851--98626891 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
98626841 AGACGAGCAA
* *
98626851 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
98626872 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
98626892 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:98630879 original size:21 final size:22
Alignment explanation
Indices: 98630853--98630899 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
98630843 CTCTGCTCAA
*
98630853 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
98630874 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
98630896 ACTC
1 ACTC
98630900 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:98650882 original size:29 final size:29
Alignment explanation
Indices: 98650788--98650891 Score: 79
Period size: 29 Copynumber: 3.6 Consensus size: 29
98650778 GAAAATTTTC
* *
98650788 ATAATCATTTAACATATTAAATGTGTTTA
1 ATAATCATTTAATATTTTAAATGTGTTTA
** ** *
98650817 ATAATCATTT--TATTGAAAATGAAATTTT
1 ATAATCATTTAATATTTTAAATG-TGTTTA
* *
98650845 TTAAT-ATTTAATATTTTAAATGTGTTTG
1 ATAATCATTTAATATTTTAAATGTGTTTA
*
98650873 ATAATCATTTTAATTTTTT
1 ATAATCA-TTTAATATTTT
98650892 TGTTTAATAT
Statistics
Matches: 55, Mismatches: 15, Indels: 9
0.70 0.19 0.11
Matches are distributed among these distances:
27 11 0.20
28 14 0.25
29 20 0.36
30 10 0.18
ACGTcount: A:0.38, C:0.04, G:0.07, T:0.52
Consensus pattern (29 bp):
ATAATCATTTAATATTTTAAATGTGTTTA
Found at i:98652304 original size:12 final size:12
Alignment explanation
Indices: 98652287--98652316 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
98652277 TTATTTATCA
98652287 ATTATTATTGTT
1 ATTATTATTGTT
98652299 ATTATTATTGTT
1 ATTATTATTGTT
98652311 ATTATT
1 ATTATT
98652317 TATTAGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (12 bp):
ATTATTATTGTT
Found at i:98654399 original size:34 final size:34
Alignment explanation
Indices: 98654353--98654420 Score: 93
Period size: 34 Copynumber: 2.0 Consensus size: 34
98654343 TGCACAGTTG
* *
98654353 AACAGTCTTGGGCCTAAGCCCTTTTCAGTATCAAT
1 AACAGTCTTGGGCCTAAGCCCATCTCAGTA-CAAT
*
98654388 AACAGT-TTGGGCCTTAGCCCATCTCAGTACAAT
1 AACAGTCTTGGGCCTAAGCCCATCTCAGTACAAT
98654421 GTAAAAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 4 0.13
34 20 0.67
35 6 0.20
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.29
Consensus pattern (34 bp):
AACAGTCTTGGGCCTAAGCCCATCTCAGTACAAT
Found at i:98659762 original size:3 final size:3
Alignment explanation
Indices: 98659751--98659984 Score: 66
Period size: 3 Copynumber: 75.7 Consensus size: 3
98659741 AAAAAAGAAG
* * * * * *
98659751 TAA TGA TAA TAA TAA TAG GAG TAA TAA TAA TAA T-A TAA TGA TGA TAAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA
* * * * * *
98659799 CAA TAA TAA -AA GGAA CAA AAA TAA TAG TAA TAA TAA -AGA TATT TAA
1 TAA TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TA-A TA-A TAA
* ** * *
98659845 TAA TAG TAA TAA TAA CGA TGA T-A TAAA TAA TAA TATA TACA TAA AAA
1 TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TA-A TA-A TAA TAA
* * * * *
98659892 TAA TAGT TAGA -AA TAA AAA TAA TGGAA GTAG TAA TAA CAA TAG TAA
1 TAA TA-A TA-A TAA TAA TAA TAA T--AA -TAA TAA TAA TAA TAA TAA
* * * * *
98659938 TAG TAA TAA -AGA TAA CAG CAA GAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
98659983 TA
1 TA
98659985 TATTTAATTC
Statistics
Matches: 172, Mismatches: 43, Indels: 32
0.70 0.17 0.13
Matches are distributed among these distances:
2 9 0.05
3 141 0.82
4 19 0.11
5 2 0.01
6 1 0.01
ACGTcount: A:0.59, C:0.03, G:0.10, T:0.27
Consensus pattern (3 bp):
TAA
Found at i:98661117 original size:24 final size:23
Alignment explanation
Indices: 98661084--98661129 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
98661074 GGGTCTGGGT
*
98661084 TTAGTAGGTTTTGGGGTTATTGGC
1 TTAGTAGGTTTAGGGGTT-TTGGC
*
98661108 TTAGTGGGTTTAGGGGTTTTGG
1 TTAGTAGGTTTAGGGGTTTTGG
98661130 GCCCAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.11, C:0.02, G:0.41, T:0.46
Consensus pattern (23 bp):
TTAGTAGGTTTAGGGGTTTTGGC
Found at i:98664916 original size:17 final size:18
Alignment explanation
Indices: 98664885--98664922 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
98664875 ATTAAAGTGA
98664885 TTAAATTAATATTAATAT
1 TTAAATTAATATTAATAT
* *
98664903 TTAATTTAAT-TTAATGT
1 TTAAATTAATATTAATAT
98664920 TTA
1 TTA
98664923 TATACAAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (18 bp):
TTAAATTAATATTAATAT
Found at i:98666448 original size:29 final size:31
Alignment explanation
Indices: 98666416--98666479 Score: 73
Period size: 31 Copynumber: 2.1 Consensus size: 31
98666406 GATATTTGAT
98666416 AATAAA-TT-TAA-AAT-ATAATATATAATAAA
1 AATAAATTTATAAGAATAATAAT-TAT-ATAAA
*
98666445 AATATATTTATAAGAATAATAATTATATAAA
1 AATAAATTTATAAGAATAATAATTATATAAA
98666476 AATA
1 AATA
98666480 TAAAATATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
29 5 0.17
30 2 0.07
31 12 0.40
32 6 0.20
33 5 0.17
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (31 bp):
AATAAATTTATAAGAATAATAATTATATAAA
Found at i:98666456 original size:17 final size:17
Alignment explanation
Indices: 98666425--98666481 Score: 57
Period size: 17 Copynumber: 3.5 Consensus size: 17
98666415 TAATAAATTT
*
98666425 AAAATATAATATATAATA
1 AAAATAT-ATTTATAATA
*
98666443 AAAATATATTTATAAGA
1 AAAATATATTTATAATA
*
98666460 ATAATA-A-TTAT-ATA
1 AAAATATATTTATAATA
98666474 AAAATATA
1 AAAATATA
98666482 AAATATATTG
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
14 7 0.21
15 5 0.15
16 1 0.03
17 13 0.39
18 7 0.21
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (17 bp):
AAAATATATTTATAATA
Found at i:98667001 original size:18 final size:18
Alignment explanation
Indices: 98666965--98667089 Score: 182
Period size: 18 Copynumber: 6.9 Consensus size: 18
98666955 AATCATATCT
*
98666965 TCTAAGATTGTATATCATA
1 TCTAAGATTGCA-ATCATA
98666984 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
* *
98667002 CCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
98667019 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
98667037 TCTAAGATTGCAATCATA
1 TCTAAGATTGCAATCATA
*
98667055 TCTAAGATTG-TATCATA
1 TCTAAGATTGCAATCATA
98667072 TCTAAGATTGCATATCAT
1 TCTAAGATTGCA-ATCAT
98667090 TGAAGATTAT
Statistics
Matches: 96, Mismatches: 7, Indels: 6
0.88 0.06 0.06
Matches are distributed among these distances:
17 31 0.32
18 49 0.51
19 16 0.17
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (18 bp):
TCTAAGATTGCAATCATA
Found at i:98667023 original size:35 final size:36
Alignment explanation
Indices: 98666965--98667089 Score: 184
Period size: 35 Copynumber: 3.5 Consensus size: 36
98666955 AATCATATCT
98666965 TCTAAGATTGTATATCATATCTAAGATTGCAATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCAATCATA
*
98667002 CCTAAGATTG-TATCATATCTAAGATTGCAATCATA
1 TCTAAGATTGATATCATATCTAAGATTGCAATCATA
*
98667037 TCTAAGATTGCA-ATCATATCTAAGATTG-TATCATA
1 TCTAAGATTG-ATATCATATCTAAGATTGCAATCATA
98667072 TCTAAGATTGCATATCAT
1 TCTAAGATTG-ATATCAT
98667090 TGAAGATTAT
Statistics
Matches: 82, Mismatches: 3, Indels: 7
0.89 0.03 0.08
Matches are distributed among these distances:
35 52 0.63
36 21 0.26
37 9 0.11
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (36 bp):
TCTAAGATTGATATCATATCTAAGATTGCAATCATA
Found at i:98667044 original size:53 final size:54
Alignment explanation
Indices: 98666965--98667089 Score: 225
Period size: 53 Copynumber: 2.3 Consensus size: 54
98666955 AATCATATCT
*
98666965 TCTAAGATTGTATATCATATCTAAGATTGCAATCATACCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATACCTAAGATTGTATCATA
*
98667019 TCTAAGATTGCA-ATCATATCTAAGATTGCAATCATATCTAAGATTGTATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCAATCATACCTAAGATTGTATCATA
98667072 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
98667090 TGAAGATTAT
Statistics
Matches: 68, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
53 52 0.76
54 16 0.24
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (54 bp):
TCTAAGATTGCATATCATATCTAAGATTGCAATCATACCTAAGATTGTATCATA
Found at i:98667629 original size:84 final size:83
Alignment explanation
Indices: 98667475--98667744 Score: 459
Period size: 83 Copynumber: 3.2 Consensus size: 83
98667465 TTTGATTTGT
* * *
98667475 AAGGATGTCAAATCATCTTGAGTCTGTTTGAGAACATTTGAGAATCATATCTGCAAGGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
*
98667540 CTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
* *
98667558 AAGGATGCCTAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATGTCTGCAAGGTCCTCA
1 AAGGATGCC-AAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCG
98667623 ATTTGTTCCTTGTAAGCAC
65 ATTTGTTCCTTGTAAGCAC
* *
98667642 AAGGATGCCAAACCATCTTGAATCTGTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGA
1 AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
98667707 TTTGTTCCTTGTAAGCAC
66 TTTGTTCCTTGTAAGCAC
98667725 AAGGATGCCAAACCATCTTG
1 AAGGATGCCAAACCATCTTG
98667745 GATCTGCTTC
Statistics
Matches: 176, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
83 98 0.56
84 78 0.44
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (83 bp):
AAGGATGCCAAACCATCTTGAGTCTGTTTGAGAACATTTGAGAGTCATATCTGCAAGGTCCTCGA
TTTGTTCCTTGTAAGCAC
Found at i:98667879 original size:119 final size:118
Alignment explanation
Indices: 98667668--98668026 Score: 583
Period size: 119 Copynumber: 3.0 Consensus size: 118
98667658 CTTGAATCTG
* * * * *
98667668 TTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCACAAGGATGC
1 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAA-CACAAGAATAC
*
98667733 CAAACCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
65 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* *
98667787 TTTGAGAATATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTTCTTGTAGACACAAGAATAC
1 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTA-ACACAAGAATAC
* *
98667852 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTATATCTGTTATA
65 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
* *
98667906 TTTGAGAACCTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAACACAAAAATAC
1 TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGT-AACACAAGAATAC
98667971 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
65 CAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
98668025 TT
1 TT
98668027 AACCACTGGT
Statistics
Matches: 222, Mismatches: 16, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
119 220 0.99
120 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (118 bp):
TTTGAGAACATCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAACACAAGAATACC
AAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATA
Found at i:98674724 original size:6 final size:6
Alignment explanation
Indices: 98674715--98674755 Score: 73
Period size: 6 Copynumber: 6.8 Consensus size: 6
98674705 GATAGTGAAA
*
98674715 GGCCTT GGCCTT GGCCTT GGCCTT GGCCTT GGCCAT GGCCT
1 GGCCTT GGCCTT GGCCTT GGCCTT GGCCTT GGCCTT GGCCT
98674756 CCTTCATGGG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.02, C:0.34, G:0.34, T:0.29
Consensus pattern (6 bp):
GGCCTT
Found at i:98675669 original size:5 final size:5
Alignment explanation
Indices: 98675659--98675696 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
98675649 CAATTCCCTC
*
98675659 CTTTT CTTTT CTTTT CCTTT CTTTT CTTTT CTTTT CTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTT
98675697 GCTGTATATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (5 bp):
CTTTT
Found at i:98675759 original size:14 final size:15
Alignment explanation
Indices: 98675740--98675768 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
98675730 GTCTGTCGTC
98675740 TCTTT-CTCTCCTTT
1 TCTTTCCTCTCCTTT
98675754 TCTTTCCTCTCCTTT
1 TCTTTCCTCTCCTTT
98675769 GTAGCAGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (15 bp):
TCTTTCCTCTCCTTT
Found at i:98685516 original size:2 final size:2
Alignment explanation
Indices: 98685509--98685537 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
98685499 ATATGCTCTT
98685509 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
98685538 TTAGTTTGAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:98694514 original size:14 final size:15
Alignment explanation
Indices: 98694490--98694518 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
98694480 TTGCATACGT
98694490 AATTGAAAATTAAAA
1 AATTGAAAATTAAAA
98694505 AATT-AAAATTAAAA
1 AATTGAAAATTAAAA
98694519 TTATTGGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (15 bp):
AATTGAAAATTAAAA
Found at i:98694620 original size:28 final size:28
Alignment explanation
Indices: 98694588--98694646 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
98694578 GCTTGGATTT
* * *
98694588 AATTAAAAATATTCGAAATTTTTAAAAA
1 AATTAAAAAGATCCCAAATTTTTAAAAA
**
98694616 AATTAATCAGATCCCAAATTTTTAAAAA
1 AATTAAAAAGATCCCAAATTTTTAAAAA
98694644 AAT
1 AAT
98694647 ATTAATCCTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.54, C:0.08, G:0.03, T:0.34
Consensus pattern (28 bp):
AATTAAAAAGATCCCAAATTTTTAAAAA
Found at i:98698763 original size:25 final size:25
Alignment explanation
Indices: 98698730--98698785 Score: 78
Period size: 27 Copynumber: 2.2 Consensus size: 25
98698720 AGCTAACCCA
98698730 TTTTTGGT-ATATGATCTTTACACT
1 TTTTTGGTAATATGATCTTTACACT
*
98698754 TTTTTGGGTAGATATGATGTTTACACT
1 TTTTT-GGTA-ATATGATCTTTACACT
98698781 TTTTT
1 TTTTT
98698786 TTGAAAACTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 5 0.18
25 3 0.11
27 20 0.71
ACGTcount: A:0.20, C:0.09, G:0.16, T:0.55
Consensus pattern (25 bp):
TTTTTGGTAATATGATCTTTACACT
Found at i:98701427 original size:4 final size:4
Alignment explanation
Indices: 98701414--98701448 Score: 56
Period size: 4 Copynumber: 9.2 Consensus size: 4
98701404 TCAAATTTCC
98701414 CTTT -TTT CTTT CTTT CTTT CTTT C-TT CTTT CTTT C
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT C
98701449 ACGTTTGCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 6 0.21
4 23 0.79
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (4 bp):
CTTT
Found at i:98701797 original size:13 final size:14
Alignment explanation
Indices: 98701779--98701815 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
98701769 ACTATAATTC
*
98701779 ATAAATATTTAT-A
1 ATAAATATTCATGA
98701792 ATAAATATTCATGA
1 ATAAATATTCATGA
98701806 ATAAAT-TTCA
1 ATAAATATTCA
98701816 CGGAAACAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 15 0.68
14 7 0.32
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (14 bp):
ATAAATATTCATGA
Found at i:98702942 original size:104 final size:105
Alignment explanation
Indices: 98702822--98703029 Score: 339
Period size: 104 Copynumber: 2.0 Consensus size: 105
98702812 TAAACAAAAA
98702822 ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAGTTTTAAATAATAAAA-TTCTAACAA
1 ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAGTTTTAAATAATAAAATTTCTAACAA
* *
98702886 AATTGTATTAAAA-TTTTGTTAATTACTCTATAAAATTTTG
66 AATTGTATAAAAATTTTTGTT-ATTACTATATAAAATTTTG
*
98702926 ATTAGTTTAACAAAACAATGATATGTTAAGTTGGAATAAGTTTTAAATAATAAAATTTCTAACAA
1 ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAGTTTTAAATAATAAAATTTCTAACAA
* * *
98702991 AATTTTATAAAAATTTTTGTTATTATTATATATAATTTT
66 AATTGTATAAAAATTTTTGTTATTACTATATAAAATTTT
98703030 TGACTGTTTT
Statistics
Matches: 96, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
104 54 0.56
105 35 0.36
106 7 0.07
ACGTcount: A:0.45, C:0.05, G:0.08, T:0.42
Consensus pattern (105 bp):
ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAGTTTTAAATAATAAAATTTCTAACAA
AATTGTATAAAAATTTTTGTTATTACTATATAAAATTTTG
Found at i:98704289 original size:3 final size:3
Alignment explanation
Indices: 98704228--98704280 Score: 63
Period size: 3 Copynumber: 17.7 Consensus size: 3
98704218 TTTTGTTAAC
* *
98704228 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TCT- TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
*
98704273 TTA GTA TT
1 TTA TTA TT
98704281 GGTATTATTG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
2 1 0.02
3 41 0.98
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:98704483 original size:34 final size:35
Alignment explanation
Indices: 98704406--98704483 Score: 90
Period size: 34 Copynumber: 2.2 Consensus size: 35
98704396 AATTTGTTTA
*
98704406 ATATATATACGTATACTCATATTTCTTTTTATATAT
1 ATATATATACATATAC-CATATTTCTTTTTATATAT
*
98704442 ATCTATATACATATA-CATATTT-TATTTTATA-AGT
1 ATATATATACATATACCATATTTCT-TTTTATATA-T
98704476 ATATATAT
1 ATATATAT
98704484 TTATAGGTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
33 2 0.05
34 22 0.59
36 13 0.35
ACGTcount: A:0.37, C:0.09, G:0.03, T:0.51
Consensus pattern (35 bp):
ATATATATACATATACCATATTTCTTTTTATATAT
Found at i:98715687 original size:1 final size:1
Alignment explanation
Indices: 98715681--98715706 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
98715671 TTTGCTTCCT
98715681 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
98715707 CTTTGGAGAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:98717316 original size:173 final size:170
Alignment explanation
Indices: 98717064--98717453 Score: 516
Period size: 173 Copynumber: 2.3 Consensus size: 170
98717054 TCCTGCATTA
* * * *
98717064 ACAGCGAAGCAGATCAAAGATAGTAATTCTATCTCCTTGAGATTACAATGGAGCGGATTAAAGGA
1 ACAGCGGAGCAGATCGAAGATAGTAATCCTATCTCCCTGAGATTACAATGGAGCGGATTAAAGGA
98717129 TCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTTATCTCCCTGAGATTACAGTG
66 TCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTTATCTCCCTGAGATTACAGTG
* * *
98717194 GAACAGACCGAAGAAATGCAGATCTTGTCTCCCTGAGGTT
131 GAACAGACCGAAGAAATGCAGATCTTATCCCCCTGAAGTT
*
98717234 ACAGCGGAGCAGATCGAAGATA-TAATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATTAAATA
1 ACAGCGGAGCAGATCGAAGATAGTAATCCTATCTCCCTGAGA-TTACAATGGAGCGGA-T---TA
* * * *
98717297 AAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCTCTGAGGTTA
61 AAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTTATCTCCCTGAGATTA
** *
98717362 CAGTGGAGTAGACCGAAGAATTGCAGATCTTATCCCCCTGAAGTT
126 CAGTGGAACAGACCGAAGAAATGCAGATCTTATCCCCCTGAAGTT
* * ** * *
98717407 ACAGTGGAGCAGATTGAAGCCAG-AGATCTTATCTCCCCGAGATTACA
1 ACAGCGGAGCAGATCGAAGATAGTA-ATCCTATCTCCCTGAGATTACA
98717454 GCGGAGCAGA
Statistics
Matches: 191, Mismatches: 21, Indels: 12
0.85 0.09 0.05
Matches are distributed among these distances:
168 1 0.01
169 29 0.15
170 21 0.11
173 121 0.63
174 18 0.09
175 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (170 bp):
ACAGCGGAGCAGATCGAAGATAGTAATCCTATCTCCCTGAGATTACAATGGAGCGGATTAAAGGA
TCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTTATCTCCCTGAGATTACAGTG
GAACAGACCGAAGAAATGCAGATCTTATCCCCCTGAAGTT
Found at i:98717393 original size:46 final size:45
Alignment explanation
Indices: 98717127--98717502 Score: 261
Period size: 43 Copynumber: 8.6 Consensus size: 45
98717117 CGGATTAAAG
* * * *
98717127 GATCTTATCTCTCTGAAGTTACAGTAGAGAAGATC--A-CAT-CA
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGAATGCA
* * *
98717168 GGTCTTATCTCCCTG-AGATTACAGTGGAACAGACCGAAGAAATGCA
1 GATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAG-AATGCA
* * *
98717214 GATCTTGTCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATAT--A
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGA-ATGCA
* * ** * *
98717258 -ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAATAAAG--
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGAATGCA
* * * *
98717300 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATC---GCAT-CA
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGAATGCA
* * * * *
98717341 GGTCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCA
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGAA-TGCA
* * *
98717387 GATCTTATCCCCCTGAAGTTACAGTGGAGCAGATTGAAGCCA-G-A
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAG-AATGCA
* *
98717431 GATCTTATCTCCCCG-AGATTACAGCGGAGCAGATCGAAG-A--CA
1 GATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGAATGCA
* *
98717473 CTATCCTATCTCCCTGAAGTTACAGTGGAG
1 -GATCTTATCTCCCTGAAGTTACAGTGGAG
98717503 TGGGTTAAAA
Statistics
Matches: 261, Mismatches: 52, Indels: 42
0.74 0.15 0.12
Matches are distributed among these distances:
40 3 0.01
41 57 0.22
42 3 0.01
43 84 0.32
44 38 0.15
45 5 0.02
46 69 0.26
47 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (45 bp):
GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGAATGCA
Found at i:98717618 original size:218 final size:217
Alignment explanation
Indices: 98717213--98717624 Score: 565
Period size: 218 Copynumber: 1.9 Consensus size: 217
98717203 GAAGAAATGC
* * * *
98717213 AGATCTTGTCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATATAATCCTATCTCCCTGAAGTTA
1 AGATCTTATCTCCCCGAGATTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGTTA
* *
98717278 CAGTGGAGCGGATTAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 CAGTGGAGCGGATTAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAAG
* * * * * *** * * *
98717343 TCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCAGATCTTATCCCCCTGAAGTTA
131 TCTTATCTCCCTGAAGATACAGTGGAATAGACCGAAAAACCACAAACCTCATCCCCCTGAAGTTA
98717408 CAGTGGAGCAGATTGAAGCCAG
196 CAGTGGAGCAGATTGAAGCCAG
98717430 AGATCTTATCTCCCCGAGATTACAGCGGAGCAGATCGAAGACACT-ATCCTATCTCCCTGAAGTT
1 AGATCTTATCTCCCCGAGATTACAGCGGAGCAGATCGAAGACA-TAATCCTATCTCCCTGAAGTT
* * * *
98717494 ACAGTGGAGTGGGTTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCAGAGTAGGTCGCATCA
65 ACAGTGGAGCGGATT-AAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCA
* * ** *
98717559 AGTCTTATTTCCCTGAAGATGCAGTGGAATAGATTGAAAAACCACAAACCTCGTCCCCCTGAAGT
129 AGTCTTATCTCCCTGAAGATACAGTGGAATAGACCGAAAAACCACAAACCTCATCCCCCTGAAGT
98717624 T
194 T
98717625 GCTACGAAGA
Statistics
Matches: 167, Mismatches: 26, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
217 71 0.43
218 96 0.57
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (217 bp):
AGATCTTATCTCCCCGAGATTACAGCGGAGCAGATCGAAGACATAATCCTATCTCCCTGAAGTTA
CAGTGGAGCGGATTAAATAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCATCAAG
TCTTATCTCCCTGAAGATACAGTGGAATAGACCGAAAAACCACAAACCTCATCCCCCTGAAGTTA
CAGTGGAGCAGATTGAAGCCAG
Found at i:98717954 original size:9 final size:9
Alignment explanation
Indices: 98717935--98717964 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
98717925 CGTCCCATCG
98717935 CTGCT-CAC
1 CTGCTCCAC
98717943 CTGCTCCAC
1 CTGCTCCAC
98717952 CTGCTCCAC
1 CTGCTCCAC
98717961 CTGC
1 CTGC
98717965 AAAGAGAAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 5 0.24
9 16 0.76
ACGTcount: A:0.10, C:0.53, G:0.13, T:0.23
Consensus pattern (9 bp):
CTGCTCCAC
Found at i:98718993 original size:3 final size:3
Alignment explanation
Indices: 98718929--98718984 Score: 69
Period size: 3 Copynumber: 18.7 Consensus size: 3
98718919 TTTGTTAACT
* *
98718929 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TCT- TTA CTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
*
98718974 TTA TTA GTA TT
1 TTA TTA TTA TT
98718985 GGTATTATTG
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
2 1 0.02
3 44 0.98
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:98719065 original size:22 final size:23
Alignment explanation
Indices: 98719018--98719066 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
98719008 ATCTCTATTC
*
98719018 ATATATACTTATGTATTTTCAAAT
1 ATATATACTTATGTATTATC-AAT
98719042 ATATATATCTTAT-TATTATC-AT
1 ATATATA-CTTATGTATTATCAAT
98719064 ATA
1 ATA
98719067 AGTGCTTGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 5 0.22
24 13 0.57
25 5 0.22
ACGTcount: A:0.39, C:0.08, G:0.02, T:0.51
Consensus pattern (23 bp):
ATATATACTTATGTATTATCAAT
Found at i:98719192 original size:36 final size:36
Alignment explanation
Indices: 98719113--98719192 Score: 92
Period size: 36 Copynumber: 2.2 Consensus size: 36
98719103 AATTTGTTTA
* *
98719113 ATATATATACGTATACTCATATTTCTTTTTATATAT
1 ATATATATACATATACTCATATTTATTTTTATATAT
* *
98719149 ATCTATATACATATACAT-ATTTTTATTTTTATA-AGT
1 ATATATATACATATAC-TCATATTTATTTTTATATA-T
98719185 ATATATAT
1 ATATATAT
98719193 TTATAGGTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
35 1 0.03
36 35 0.95
37 1 0.03
ACGTcount: A:0.36, C:0.09, G:0.03, T:0.53
Consensus pattern (36 bp):
ATATATATACATATACTCATATTTATTTTTATATAT
Found at i:98727943 original size:6 final size:6
Alignment explanation
Indices: 98727932--98727962 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
98727922 TATTATAAGA
98727932 TTTATT TTTATT TTTATT TTTATT TTT-TT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TT
98727963 GCTTTTAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.16
6 21 0.84
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (6 bp):
TTTATT
Found at i:98728632 original size:45 final size:43
Alignment explanation
Indices: 98728542--98728633 Score: 121
Period size: 45 Copynumber: 2.1 Consensus size: 43
98728532 TAGAATTTAA
*
98728542 TTTAATTGTTTTATTTTTATTTTAAAACAAATAAATTTATATT
1 TTTAATTGTTTTATTTTTATTTTAAAACAAATAAAATTATATT
* * * *
98728585 TTTAATTTTTTTATTTTTTTATTTTAAAACGAGTAAAATTATTTT
1 TTTAATTGTTTTA--TTTTTATTTTAAAACAAATAAAATTATATT
98728630 TTTA
1 TTTA
98728634 GTTTAGACTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
43 12 0.29
45 30 0.71
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (43 bp):
TTTAATTGTTTTATTTTTATTTTAAAACAAATAAAATTATATT
Found at i:98740914 original size:85 final size:84
Alignment explanation
Indices: 98740808--98740976 Score: 275
Period size: 85 Copynumber: 2.0 Consensus size: 84
98740798 TCCTTGTCTG
* * *
98740808 CAACTCTTTTACTTCAAACCCTCATTTTACGACTCTCAACCCACTGAGTGAACTGTCTTACAAGT
1 CAACTCTTTTACTTCAAACCCTCACTTTACGACTCTCAACCCACCGAGTGAACTATCTTACAA-T
98740873 CCCCATCCTCCTCAATCCAT
65 CCCCATCCTCCTCAATCCAT
* *
98740893 CAACTCTTTTACTTCAAACCCTCACTTTACGGCTCTCAACCCACCGAGTGAATTATCTTACAATC
1 CAACTCTTTTACTTCAAACCCTCACTTTACGACTCTCAACCCACCGAGTGAACTATCTTACAATC
*
98740958 CCCATCCTCCTCAGTCCAT
66 CCCATCCTCCTCAATCCAT
98740977 ATGTCAGTTA
Statistics
Matches: 78, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
84 20 0.26
85 58 0.74
ACGTcount: A:0.25, C:0.37, G:0.07, T:0.30
Consensus pattern (84 bp):
CAACTCTTTTACTTCAAACCCTCACTTTACGACTCTCAACCCACCGAGTGAACTATCTTACAATC
CCCATCCTCCTCAATCCAT
Found at i:98746428 original size:24 final size:24
Alignment explanation
Indices: 98746401--98746452 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
98746391 TTAGTAAGTC
*
98746401 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
98746425 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
98746449 AAAT
1 AAAT
98746453 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:98748395 original size:24 final size:24
Alignment explanation
Indices: 98748368--98748419 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
98748358 TTAGTAAGTC
*
98748368 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
98748392 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
98748416 AAAT
1 AAAT
98748420 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:98751560 original size:17 final size:19
Alignment explanation
Indices: 98751511--98751573 Score: 62
Period size: 17 Copynumber: 3.4 Consensus size: 19
98751501 TTGTTTTATA
**
98751511 TTTTAATTTCTAATTTTTACT
1 TTTTAATTT-TAATTCATA-T
98751532 TTTTAA--TTAATTCA-A-
1 TTTTAATTTTAATTCATAT
98751547 TTTTAATTTTAATTCATAT
1 TTTTAATTTTAATTCATAT
98751566 TTTTAATT
1 TTTTAATT
98751574 AATAACTCTA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
15 6 0.17
17 9 0.25
18 6 0.17
19 9 0.25
21 6 0.17
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.63
Consensus pattern (19 bp):
TTTTAATTTTAATTCATAT
Found at i:98753935 original size:27 final size:25
Alignment explanation
Indices: 98753896--98753953 Score: 71
Period size: 27 Copynumber: 2.2 Consensus size: 25
98753886 GAAAACCGAT
98753896 TTAAAACTCAAAACAATAATTTAATAA
1 TTAAAACTCAAAACAATAA-TTAA-AA
* * *
98753923 TTAAACCTTAAAACAATTATTAAAA
1 TTAAAACTCAAAACAATAATTAAAA
98753948 TTAAAA
1 TTAAAA
98753954 AAAAACTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 7 0.26
26 4 0.15
27 16 0.59
ACGTcount: A:0.59, C:0.10, G:0.00, T:0.31
Consensus pattern (25 bp):
TTAAAACTCAAAACAATAATTAAAA
Found at i:98759927 original size:11 final size:11
Alignment explanation
Indices: 98759903--98759945 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
98759893 TTCCAATATG
*
98759903 TATATATATTA
1 TATATATTTTA
*
98759914 TATGTATTTTA
1 TATATATTTTA
* *
98759925 TATATATTATG
1 TATATATTTTA
98759936 TATATATTTT
1 TATATATTTT
98759946 TTAATTCCAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (11 bp):
TATATATTTTA
Found at i:98759947 original size:24 final size:24
Alignment explanation
Indices: 98759903--98760063 Score: 72
Period size: 24 Copynumber: 6.8 Consensus size: 24
98759893 TTCCAATATG
* *
98759903 TATATA-TAT-TATATGTATTTTA
1 TATATATTATGTATATATTTTTTA
98759925 TATATATTATGTATATATTTTTTA
1 TATATATTATGTATATATTTTTTA
*
98759949 -AT-TCCATTA-GTTATATATTTCTTA
1 TATAT--ATTATG-TATATATTTTTTA
* *
98759973 TACTAT-TCCATGTATGTA--TTTTA
1 TA-TATAT-TATGTATATATTTTTTA
* *
98759996 TATCATCTTATGTATATA-TTCTTA
1 TAT-ATATTATGTATATATTTTTTA
* * *
98760020 AATACTATTATATATATA-TTTTAA
1 TATA-TATTATGTATATATTTTTTA
* *
98760044 TACCATATTGTGTATATATT
1 TA-TATATTATGTATATATT
98760064 ATTATTACTA
Statistics
Matches: 105, Mismatches: 18, Indels: 29
0.69 0.12 0.19
Matches are distributed among these distances:
22 8 0.08
23 23 0.22
24 62 0.59
25 9 0.09
26 2 0.02
27 1 0.01
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (24 bp):
TATATATTATGTATATATTTTTTA
Found at i:98760014 original size:48 final size:48
Alignment explanation
Indices: 98759936--98760063 Score: 115
Period size: 47 Copynumber: 2.7 Consensus size: 48
98759926 ATATATTATG
* *
98759936 TATATATTTTTTAATTCC--ATTA-GTTATATATTTCTT-ATACTATTCCA
1 TATATATATTTTAATACCATATTATG-TATATATTTCTTAATACTATT--A
* * * *
98759983 TGTATGTATTTT-ATATCATCTTATGTATATA-TTCTTAAATACTATTA
1 TATATATATTTTAATACCATATTATGTATATATTTCTT-AATACTATTA
*
98760030 TATATATATTTTAATACCATATTGTGTATATATT
1 TATATATATTTTAATACCATATTATGTATATATT
98760064 ATTATTACTA
Statistics
Matches: 63, Mismatches: 11, Indels: 12
0.73 0.13 0.14
Matches are distributed among these distances:
46 3 0.05
47 25 0.40
48 25 0.40
49 10 0.16
ACGTcount: A:0.32, C:0.09, G:0.05, T:0.54
Consensus pattern (48 bp):
TATATATATTTTAATACCATATTATGTATATATTTCTTAATACTATTA
Found at i:98760215 original size:3 final size:3
Alignment explanation
Indices: 98760207--98760341 Score: 57
Period size: 3 Copynumber: 45.3 Consensus size: 3
98760197 TGTATTTTAA
* *
98760207 TAT TAT TAT TAT TA- TAT CAT TAT TATT TAT TAT T-T TTT GTAT ATAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT -TAT -TAT
* * * * * *
98760253 TAT TCA- TAC TAT CAT TAT TA- TAT TAT TAT CAC TAG TA- CATT TAT
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT
* * * * * *
98760297 TA- TAT TAG TAT TAT TAT TGT TAT CAT TAT CAA TAT TAG TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
98760342 GTGTGTTTTC
Statistics
Matches: 97, Mismatches: 25, Indels: 20
0.68 0.18 0.14
Matches are distributed among these distances:
2 10 0.10
3 77 0.79
4 10 0.10
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.57
Consensus pattern (3 bp):
TAT
Found at i:98760274 original size:23 final size:26
Alignment explanation
Indices: 98760248--98760303 Score: 75
Period size: 23 Copynumber: 2.3 Consensus size: 26
98760238 ATTTTTTGTA
98760248 TATATTATTCAT-ACTA-T-CA-TTAT
1 TATATTATT-ATCACTAGTACATTTAT
98760271 TATATTATTATCACTAGTACATTTAT
1 TATATTATTATCACTAGTACATTTAT
98760297 TATATTA
1 TATATTA
98760304 GTATTATTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
22 2 0.07
23 13 0.45
24 1 0.03
25 2 0.07
26 11 0.38
ACGTcount: A:0.36, C:0.11, G:0.02, T:0.52
Consensus pattern (26 bp):
TATATTATTATCACTAGTACATTTAT
Found at i:98760279 original size:26 final size:27
Alignment explanation
Indices: 98760246--98760308 Score: 71
Period size: 26 Copynumber: 2.4 Consensus size: 27
98760236 TTATTTTTTG
98760246 TATA-TATTATTCA-TACTATCA-TTAT
1 TATATTATTATTCACTACTA-CATTTAT
*
98760271 TATATTATTA-TCACTAGTACATTTAT
1 TATATTATTATTCACTACTACATTTAT
*
98760297 TATATTAGTATT
1 TATATTATTATT
98760309 ATTATTGTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
25 9 0.28
26 22 0.69
27 1 0.03
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.52
Consensus pattern (27 bp):
TATATTATTATTCACTACTACATTTAT
Found at i:98760358 original size:27 final size:26
Alignment explanation
Indices: 98760295--98760358 Score: 65
Period size: 30 Copynumber: 2.3 Consensus size: 26
98760285 TAGTACATTT
98760295 ATTATATTAGTATTATTATTGTTATC
1 ATTATATTAGTATTATTATTGTTATC
* *
98760321 ATTATCAATATTAGTATTATTGTGTGTTTTC
1 A-T-T--ATATTAGTATTATTAT-TGTTATC
98760352 ATTATAT
1 ATTATAT
98760359 GTATGTCGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
26 1 0.03
27 5 0.16
28 1 0.03
29 1 0.03
30 16 0.52
31 7 0.23
ACGTcount: A:0.30, C:0.05, G:0.09, T:0.56
Consensus pattern (26 bp):
ATTATATTAGTATTATTATTGTTATC
Found at i:98760525 original size:12 final size:12
Alignment explanation
Indices: 98760508--98760538 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
98760498 ATTATTAACT
98760508 TATATATGCATA
1 TATATATGCATA
*
98760520 TATATATGTATA
1 TATATATGCATA
98760532 TATATAT
1 TATATAT
98760539 ATTTTGTGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.48
Consensus pattern (12 bp):
TATATATGCATA
Found at i:98760600 original size:28 final size:30
Alignment explanation
Indices: 98760528--98760600 Score: 75
Period size: 28 Copynumber: 2.6 Consensus size: 30
98760518 TATATATATG
*
98760528 TATATATATATATTT-TGTGTACATATCAT
1 TATATATATATATTTGTGTGTAAATATCAT
* *
98760557 TAT-TTTATATCA-TTGT-TGTAAATAT-TT
1 TATATATATAT-ATTTGTGTGTAAATATCAT
98760584 TATATATATATATTTGT
1 TATATATATATATTTGT
98760601 ACGTTTCTTA
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
27 5 0.14
28 26 0.72
29 5 0.14
ACGTcount: A:0.33, C:0.04, G:0.07, T:0.56
Consensus pattern (30 bp):
TATATATATATATTTGTGTGTAAATATCAT
Found at i:98760663 original size:3 final size:3
Alignment explanation
Indices: 98760624--98760650 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
98760614 TTTTCGTAAA
98760624 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
98760651 ATACTCTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:98767525 original size:52 final size:52
Alignment explanation
Indices: 98767447--98767547 Score: 168
Period size: 52 Copynumber: 1.9 Consensus size: 52
98767437 TATAATCCCT
*
98767447 TCCCAATCTTTCAATAGAAAGATAAAACTACCCATAATC-CTTTCCCAATCTC
1 TCCCAATCTCTCAATAGAAAGATAAAACTACCCATAATCTC-TTCCCAATCTC
*
98767499 TCCCAATCTCTCAATAGAAAGATAAAATTACCCATAATCTCTTCCCAAT
1 TCCCAATCTCTCAATAGAAAGATAAAACTACCCATAATCTCTTCCCAAT
98767548 AAAGATAAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
52 45 0.98
53 1 0.02
ACGTcount: A:0.38, C:0.30, G:0.04, T:0.29
Consensus pattern (52 bp):
TCCCAATCTCTCAATAGAAAGATAAAACTACCCATAATCTCTTCCCAATCTC
Found at i:98768664 original size:25 final size:26
Alignment explanation
Indices: 98768611--98768663 Score: 76
Period size: 24 Copynumber: 2.1 Consensus size: 26
98768601 CTTTTAATGA
98768611 TTTAAATTAATTATATAATTTAACTT
1 TTTAAATTAATTATATAATTTAACTT
98768637 TTTAAA-TAATT-T-TAATTTTAACTT
1 TTTAAATTAATTATATAA-TTTAACTT
98768661 TTT
1 TTT
98768664 TTTTAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
23 3 0.12
24 12 0.46
25 5 0.19
26 6 0.23
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (26 bp):
TTTAAATTAATTATATAATTTAACTT
Found at i:98768665 original size:26 final size:25
Alignment explanation
Indices: 98768611--98768664 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 25
98768601 CTTTTAATGA
98768611 TTTAAATTAATTATATAA-TTTAAC-TT
1 TTTAAA-TAATT-T-TAATTTTAACTTT
98768637 TTTAAATAATTTTAATTTTAACTTT
1 TTTAAATAATTTTAATTTTAACTTT
98768662 TTT
1 TTT
98768665 TTTAAAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.12
24 7 0.27
25 10 0.38
26 6 0.23
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (25 bp):
TTTAAATAATTTTAATTTTAACTTT
Found at i:98768667 original size:18 final size:19
Alignment explanation
Indices: 98768646--98768685 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
98768636 TTTTAAATAA
*
98768646 TTTT-AATTTTAACTTTTT
1 TTTTAAATTTTAAATTTTT
98768664 TTTTAAAATTTTAAATTTTT
1 TTTT-AAATTTTAAATTTTT
98768684 TT
1 TT
98768686 CTCGATTCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
20 15 0.79
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.70
Consensus pattern (19 bp):
TTTTAAATTTTAAATTTTT
Found at i:98771498 original size:76 final size:77
Alignment explanation
Indices: 98771312--98771620 Score: 485
Period size: 77 Copynumber: 4.0 Consensus size: 77
98771302 CTTCAAAGTC
* * *
98771312 TATCCTTATCAAATGCTATTCCTTTGGTCAATAAAATTACACAAATTGAACACCAATCAAAAACC
1 TATCCTTATCAAAGGCTATTCCTTTGGTCAATATAATTACACAAATTGAACTCCAATCAAAAACC
98771377 CTAATTCCCAAT
66 CTAATTCCCAAT
*
98771389 TATCCTTATCAAAGGCTATTCCTTTGGTCAATATAATTACACAAATTGAACTCCAATTAAAAACC
1 TATCCTTATCAAAGGCTATTCCTTTGGTCAATATAATTACACAAATTGAACTCCAATCAAAAACC
* *
98771454 CTAA-TCGCAAA
66 CTAATTCCCAAT
* *
98771465 TATCCTTATCAAAGGCTATTCCTTTGGTCAATATAACTACACAAATTGAACTCCGATCAAAAACC
1 TATCCTTATCAAAGGCTATTCCTTTGGTCAATATAATTACACAAATTGAACTCCAATCAAAAACC
* *
98771530 CTAATTCTCAGT
66 CTAATTCCCAAT
* *
98771542 TATCGTTATCAAAGGCTATTCCTTTGGTCAATATAATTACACAAATTGAACTCCAAATAAAAAAC
1 TATCCTTATCAAAGGCTATTCCTTTGGTCAATATAATTACACAAATTGAACTCC-AATCAAAAAC
*
98771607 CATAATTCCCAAT
65 CCTAATTCCCAAT
98771620 T
1 T
98771621 CCCCCAATCA
Statistics
Matches: 211, Mismatches: 19, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
76 71 0.34
77 121 0.57
78 19 0.09
ACGTcount: A:0.39, C:0.23, G:0.07, T:0.31
Consensus pattern (77 bp):
TATCCTTATCAAAGGCTATTCCTTTGGTCAATATAATTACACAAATTGAACTCCAATCAAAAACC
CTAATTCCCAAT
Found at i:98771590 original size:153 final size:153
Alignment explanation
Indices: 98771312--98771604 Score: 505
Period size: 153 Copynumber: 1.9 Consensus size: 153
98771302 CTTCAAAGTC
* *
98771312 TATCCTTATCAAATGCTATTCCTTTGGTCAATAAAATTACACAAATTGAACACCAATCAAAAACC
1 TATCCTTATCAAAGGCTATTCCTTTGGTCAATAAAACTACACAAATTGAACACCAATCAAAAACC
98771377 CTAATTCCCAATTATCCTTATCAAAGGCTATTCCTTTGGTCAATATAATTACACAAATTGAACTC
66 CTAATTCCCAATTATCCTTATCAAAGGCTATTCCTTTGGTCAATATAATTACACAAATTGAACTC
*
98771442 CAATTAAAAACCCTAATCGCAAA
131 CAAATAAAAACCCTAATCGCAAA
* * *
98771465 TATCCTTATCAAAGGCTATTCCTTTGGTCAATATAACTACACAAATTGAACTCCGATCAAAAACC
1 TATCCTTATCAAAGGCTATTCCTTTGGTCAATAAAACTACACAAATTGAACACCAATCAAAAACC
* * *
98771530 CTAATTCTCAGTTATCGTTATCAAAGGCTATTCCTTTGGTCAATATAATTACACAAATTGAACTC
66 CTAATTCCCAATTATCCTTATCAAAGGCTATTCCTTTGGTCAATATAATTACACAAATTGAACTC
98771595 CAAATAAAAA
131 CAAATAAAAA
98771605 ACCATAATTC
Statistics
Matches: 131, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
153 131 1.00
ACGTcount: A:0.39, C:0.23, G:0.08, T:0.31
Consensus pattern (153 bp):
TATCCTTATCAAAGGCTATTCCTTTGGTCAATAAAACTACACAAATTGAACACCAATCAAAAACC
CTAATTCCCAATTATCCTTATCAAAGGCTATTCCTTTGGTCAATATAATTACACAAATTGAACTC
CAAATAAAAACCCTAATCGCAAA
Found at i:98772361 original size:12 final size:13
Alignment explanation
Indices: 98772325--98772361 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
98772315 TGTGTTGAAC
*
98772325 CTATGTTTTTTTT
1 CTATATTTTTTTT
98772338 CT-TATTTTTTTT
1 CTATATTTTTTTT
98772350 CTAT-TTTTTTTT
1 CTATATTTTTTTT
98772362 AATTTCCATC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
12 19 0.86
13 3 0.14
ACGTcount: A:0.08, C:0.08, G:0.03, T:0.81
Consensus pattern (13 bp):
CTATATTTTTTTT
Found at i:98772366 original size:11 final size:11
Alignment explanation
Indices: 98772330--98772360 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
98772320 TGAACCTATG
98772330 TTTTTTTTCTTA
1 TTTTTTTTC-TA
98772342 TTTTTTTTCTA
1 TTTTTTTTCTA
98772353 TTTTTTTT
1 TTTTTTTT
98772361 TAATTTCCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.06, C:0.06, G:0.00, T:0.87
Consensus pattern (11 bp):
TTTTTTTTCTA
Found at i:98772540 original size:17 final size:18
Alignment explanation
Indices: 98772508--98772541 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
98772498 GGGTCGTAAA
98772508 ACGACGACGTTTTCCAGC
1 ACGACGACGTTTTCCAGC
*
98772526 ACGATGACG-TTTCCAG
1 ACGACGACGTTTTCCAG
98772542 ATTCATCTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (18 bp):
ACGACGACGTTTTCCAGC
Found at i:98774954 original size:11 final size:11
Alignment explanation
Indices: 98774940--98774966 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
98774930 AACTTAAAAT
98774940 AAACTTGACGA
1 AAACTTGACGA
98774951 AAACTTGACGA
1 AAACTTGACGA
98774962 AAACT
1 AAACT
98774967 AAAATCGATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.48, C:0.19, G:0.15, T:0.19
Consensus pattern (11 bp):
AAACTTGACGA
Found at i:98776755 original size:19 final size:19
Alignment explanation
Indices: 98776731--98776774 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
98776721 TATATTATAT
98776731 TGAAATATAATCAAGTTAG
1 TGAAATATAATCAAGTTAG
98776750 TGAAATATAATCAAGTTAG
1 TGAAATATAATCAAGTTAG
*
98776769 TAAAAT
1 TGAAAT
98776775 TATATTGAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.50, C:0.05, G:0.14, T:0.32
Consensus pattern (19 bp):
TGAAATATAATCAAGTTAG
Found at i:98777026 original size:30 final size:31
Alignment explanation
Indices: 98776970--98777028 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
98776960 CTTTTTTTTT
** *
98776970 AGTTAAATTTGGTTCTCAACCTTTTAAAAAG
1 AGTTAAATTTGACTATCAACCTTTTAAAAAG
98777001 AGTTAAATTTGACTATCAA-CTTTTAAAA
1 AGTTAAATTTGACTATCAACCTTTTAAAA
98777029 TAAAATGGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 9 0.36
31 16 0.64
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (31 bp):
AGTTAAATTTGACTATCAACCTTTTAAAAAG
Found at i:98788623 original size:17 final size:18
Alignment explanation
Indices: 98788588--98788630 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
98788578 CCCAAAATCT
98788588 AAATAAAACCCAATATAAA
1 AAATAAAA-CCAATATAAA
*
98788607 AAATAAAA-CAATGTAAA
1 AAATAAAACCAATATAAA
98788624 AAA-AAAA
1 AAATAAAA
98788631 TGGTTTAAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
16 4 0.17
17 11 0.48
19 8 0.35
ACGTcount: A:0.74, C:0.09, G:0.02, T:0.14
Consensus pattern (18 bp):
AAATAAAACCAATATAAA
Found at i:98788970 original size:19 final size:18
Alignment explanation
Indices: 98788946--98789007 Score: 63
Period size: 18 Copynumber: 3.3 Consensus size: 18
98788936 AGAATAAAAA
98788946 ATAAAAATAAATAAAATTT
1 ATAAAAAT-AATAAAATTT
* * *
98788965 ATAAAATTATTAAATTTT
1 ATAAAAATAATAAAATTT
98788983 AATAAAAAT-ATAAAATTAT
1 -ATAAAAATAATAAAATT-T
98789002 ATAAAA
1 ATAAAA
98789008 TTCGTAAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
18 20 0.57
19 15 0.43
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (18 bp):
ATAAAAATAATAAAATTT
Found at i:98789003 original size:10 final size:10
Alignment explanation
Indices: 98788946--98789009 Score: 57
Period size: 10 Copynumber: 6.8 Consensus size: 10
98788936 AGAATAAAAA
* *
98788946 ATAAAAATAA
1 ATAAAATTAT
98788956 ATAAAATT-T
1 ATAAAATTAT
98788965 ATAAAATTAT
1 ATAAAATTAT
*
98788975 -T-AAATTTT
1 ATAAAATTAT
98788983 AATAAAA--AT
1 -ATAAAATTAT
98788992 ATAAAATTAT
1 ATAAAATTAT
98789002 ATAAAATT
1 ATAAAATT
98789010 CGTAAAAAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
8 12 0.27
9 10 0.23
10 19 0.43
11 3 0.07
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
ATAAAATTAT
Found at i:98789106 original size:29 final size:27
Alignment explanation
Indices: 98788986--98789108 Score: 97
Period size: 28 Copynumber: 4.3 Consensus size: 27
98788976 AAATTTTAAT
* *
98788986 AAAAATATAAAA-TTATATAAAATTCGTA
1 AAAAATATAAAATTTA-AAAAAATT-ATA
*
98789014 AAAAATATAAAATATAAAAAAAATTATA
1 AAAAATATAAAAT-TTAAAAAAATTATA
** *
98789042 AAGTCATAAGAAAATTCTAAAAAAA-TATA
1 AA-AAAT-ATAAAATT-TAAAAAAATTATA
98789071 AAGAAATATAAAATTTATAAAAAGATTATA
1 AA-AAATATAAAATTTA-AAAAA-ATTATA
98789101 AAAAATAT
1 AAAAATAT
98789109 TGTACCAAAA
Statistics
Matches: 77, Mismatches: 10, Indels: 15
0.75 0.10 0.15
Matches are distributed among these distances:
27 2 0.03
28 28 0.36
29 26 0.34
30 21 0.27
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (27 bp):
AAAAATATAAAATTTAAAAAAATTATA
Found at i:98791853 original size:32 final size:32
Alignment explanation
Indices: 98791808--98791877 Score: 97
Period size: 32 Copynumber: 2.2 Consensus size: 32
98791798 TGCATTTTAT
*
98791808 ATTTTTTTCTAATTTTTTAAT-AAATTTAAAA
1 ATTTTTTTATAATTTTTTAATAAAATTTAAAA
* *
98791839 ATATTTTTTATAATTTTTTATTAAAATTTAATA
1 AT-TTTTTTATAATTTTTTAATAAAATTTAAAA
98791872 ATTTTT
1 ATTTTT
98791878 ATAACTTTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
31 2 0.06
32 21 0.62
33 11 0.32
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.61
Consensus pattern (32 bp):
ATTTTTTTATAATTTTTTAATAAAATTTAAAA
Found at i:98791879 original size:30 final size:30
Alignment explanation
Indices: 98791811--98791886 Score: 82
Period size: 30 Copynumber: 2.5 Consensus size: 30
98791801 ATTTTATATT
* *
98791811 TTTTTCTAATTTTTTAATAAATTTAAAAATAT
1 TTTTTATAATTTTTTAATAAATTT--AAATAA
*
98791843 TTTTTATAATTTTTTATTAAAATTT-AATAA
1 TTTTTATAATTTTTTAAT-AAATTTAAATAA
*
98791873 TTTTTATAACTTTT
1 TTTTTATAATTTTT
98791887 ATTGTTTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
30 17 0.44
32 16 0.41
33 6 0.15
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (30 bp):
TTTTTATAATTTTTTAATAAATTTAAATAA
Found at i:98795029 original size:25 final size:25
Alignment explanation
Indices: 98794995--98795048 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
98794985 AAACTCTTTC
* *
98794995 GAGCCATATAATGGGAAGCTCATAT
1 GAGCCATATAATGAGAAGCTCATAA
98795020 GAGCCATATAATGAGAAGCTCATAA
1 GAGCCATATAATGAGAAGCTCATAA
98795045 GAGC
1 GAGC
98795049 TGTAATCAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.20
Consensus pattern (25 bp):
GAGCCATATAATGAGAAGCTCATAA
Done.