Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 292 of 295
Found at i:98795111 original size:25 final size:24
Alignment explanation
Indices: 98795069--98795138 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 24
98795059 AAGCTTATGC
*
98795069 GAGCCAATATCGGGAAGCTCCAGA
1 GAGCCATTATCGGGAAGCTCCAGA
**
98795093 GAGCCATTAATCGGGAAGCTCTGGA
1 GAGCCATT-ATCGGGAAGCTCCAGA
* *
98795118 GAGCCATATATCAGGACGCTC
1 GAGCCAT-TATCGGGAAGCTC
98795139 ATAAGAGATG
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
24 7 0.18
25 31 0.79
26 1 0.03
ACGTcount: A:0.30, C:0.24, G:0.29, T:0.17
Consensus pattern (24 bp):
GAGCCATTATCGGGAAGCTCCAGA
Found at i:98795924 original size:19 final size:19
Alignment explanation
Indices: 98795900--98795937 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
98795890 GGTTTATTTG
98795900 CCATATAAGGACCTCAAAT
1 CCATATAAGGACCTCAAAT
98795919 CCATATAAGGACCTCAAAT
1 CCATATAAGGACCTCAAAT
98795938 TTTGAATTCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.26, G:0.11, T:0.21
Consensus pattern (19 bp):
CCATATAAGGACCTCAAAT
Found at i:98797781 original size:29 final size:31
Alignment explanation
Indices: 98797720--98797781 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 31
98797710 TTAAAATTTA
98797720 AAAAATAATAAATAATGAATAATAAATTCTT
1 AAAAATAATAAATAATGAATAATAAATTCTT
*
98797751 AAAAATAA-AAAT-AT-ATTAATGAAATTCTT
1 AAAAATAATAAATAATGAATAAT-AAATTCTT
98797780 AA
1 AA
98797782 TTTAGAAGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 5 0.17
29 12 0.41
30 4 0.14
31 8 0.28
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.32
Consensus pattern (31 bp):
AAAAATAATAAATAATGAATAATAAATTCTT
Found at i:98797887 original size:42 final size:42
Alignment explanation
Indices: 98797828--98797914 Score: 124
Period size: 42 Copynumber: 2.1 Consensus size: 42
98797818 AACAAAGACC
98797828 ACTGCTGTACGTGGAAATAAAAAGAA-TTTGTCCGAAAAAGCA
1 ACTGCTGTACGTGGAAATAAAAAGAACTTTGTCC-AAAAAGCA
* *
98797870 ACTGCTGT-CTGTGGAAATAAAATGAACTTTGTCCCAAAAGCA
1 ACTGCTGTAC-GTGGAAATAAAAAGAACTTTGTCCAAAAAGCA
98797912 ACT
1 ACT
98797915 ACAGTCAGGG
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
41 1 0.02
42 33 0.80
43 7 0.17
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (42 bp):
ACTGCTGTACGTGGAAATAAAAAGAACTTTGTCCAAAAAGCA
Found at i:98797929 original size:43 final size:42
Alignment explanation
Indices: 98797840--98797930 Score: 103
Period size: 42 Copynumber: 2.1 Consensus size: 42
98797830 TGCTGTACGT
* * * *
98797840 GGAAATAAAAAGAATTTGTCCGAAAAAGCAACTGCTGTCTGT
1 GGAAATAAAAAGAATTTGTCCGAAAAAGCAACTACAGTCGGG
* *
98797882 GGAAATAAAATGAACTTTGTCC-CAAAAGCAACTACAGTCAGGG
1 GGAAATAAAAAGAA-TTTGTCCGAAAAAGCAACTACAGTC-GGG
98797925 GGAAAT
1 GGAAAT
98797931 GAATATAGTG
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
42 27 0.66
43 14 0.34
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.21
Consensus pattern (42 bp):
GGAAATAAAAAGAATTTGTCCGAAAAAGCAACTACAGTCGGG
Found at i:98798138 original size:15 final size:15
Alignment explanation
Indices: 98798115--98798144 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
98798105 TTTGAATCAA
*
98798115 TTAATTTAATATCTT
1 TTAAATTAATATCTT
98798130 TTAAATTAATATCTT
1 TTAAATTAATATCTT
98798145 AATTAATTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.57
Consensus pattern (15 bp):
TTAAATTAATATCTT
Found at i:98798879 original size:8 final size:8
Alignment explanation
Indices: 98798866--98798891 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
98798856 TGGACCTCAA
98798866 AATAAAGT
1 AATAAAGT
98798874 AATAAAGT
1 AATAAAGT
98798882 AATAAAGT
1 AATAAAGT
98798890 AA
1 AA
98798892 CAAATAAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.12, T:0.23
Consensus pattern (8 bp):
AATAAAGT
Found at i:98806876 original size:3 final size:3
Alignment explanation
Indices: 98806868--98806939 Score: 53
Period size: 3 Copynumber: 24.7 Consensus size: 3
98806858 TTAATTTATT
* ** *
98806868 TAA TAA TAA TAC TAA TAA TAA T-A TAA -AA CCA TAA CAA TTAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA
*
98806912 TTA TAA TAA TCAA TAA T-A TAA T-A TAA TA
1 TAA TAA TAA T-AA TAA TAA TAA TAA TAA TA
98806940 TATGTATATA
Statistics
Matches: 54, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
2 8 0.15
3 41 0.76
4 5 0.09
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:98811155 original size:38 final size:38
Alignment explanation
Indices: 98811112--98811270 Score: 219
Period size: 38 Copynumber: 4.2 Consensus size: 38
98811102 AAAGGCTTGA
* * *
98811112 ATATAATACCAGCACTAGGCCTGCGAGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
98811150 ATATAAGACCAGCACGAAGCCTTCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
98811188 ATATATTACCAGCACGAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* * * * *
98811226 ATATAATGCCAGCACGAAGCATGTGGGATTTAACTCTG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
98811264 ATATAAT
1 ATATAAT
98811271 TCTAGCATAT
Statistics
Matches: 107, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 107 1.00
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.23
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:98815926 original size:17 final size:17
Alignment explanation
Indices: 98815904--98815937 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
98815894 ATCGAATAAT
98815904 ATAATATCAATTAAATA
1 ATAATATCAATTAAATA
**
98815921 ATAATATTTATTAAATA
1 ATAATATCAATTAAATA
98815938 TTTATTTAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
ATAATATCAATTAAATA
Found at i:98816227 original size:3 final size:3
Alignment explanation
Indices: 98816219--98816290 Score: 53
Period size: 3 Copynumber: 24.7 Consensus size: 3
98816209 TTAATTTATT
* ** *
98816219 TAA TAA TAA TAC TAA TAA TAA T-A TAA -AA CCA TAA CAA TTAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA TAA
*
98816263 TTA TAA TAA TCAA TAA T-A TAA T-A TAA TA
1 TAA TAA TAA T-AA TAA TAA TAA TAA TAA TA
98816291 TATGTATATA
Statistics
Matches: 54, Mismatches: 9, Indels: 12
0.72 0.12 0.16
Matches are distributed among these distances:
2 8 0.15
3 41 0.76
4 5 0.09
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:98820006 original size:20 final size:19
Alignment explanation
Indices: 98819954--98820015 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 19
98819944 GGATATACGT
*
98819954 AAATAATACTATTTATAAAA
1 AAATAATA-TATTTATAATA
*
98819974 AACATATATATATTTATAATG
1 AA-ATA-ATATATTTATAATA
*
98819995 AAATACATATATTAATAATA
1 AAATA-ATATATTTATAATA
98820015 A
1 A
98820016 TAGTAACAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
20 18 0.51
21 14 0.40
22 3 0.09
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.37
Consensus pattern (19 bp):
AAATAATATATTTATAATA
Found at i:98820348 original size:20 final size:22
Alignment explanation
Indices: 98820309--98820358 Score: 68
Period size: 20 Copynumber: 2.4 Consensus size: 22
98820299 ATAATATAAA
*
98820309 ATATAATATTAAGAACACATGT
1 ATATAATATTAAGAACACATAT
*
98820331 ATATAATA-TATGAA-ACATAT
1 ATATAATATTAAGAACACATAT
98820351 ATATAATA
1 ATATAATA
98820359 AAATATTAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 13 0.50
21 5 0.19
22 8 0.31
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.34
Consensus pattern (22 bp):
ATATAATATTAAGAACACATAT
Found at i:98821006 original size:16 final size:16
Alignment explanation
Indices: 98820965--98821000 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
98820955 AAAAAAGAGA
*
98820965 GAGAAATGAGAGAGGG
1 GAGAAAGGAGAGAGGG
98820981 GAGAAAGGAGAGAGGG
1 GAGAAAGGAGAGAGGG
98820997 GAGA
1 GAGA
98821001 GGGGAGTGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.53, T:0.03
Consensus pattern (16 bp):
GAGAAAGGAGAGAGGG
Found at i:98822428 original size:55 final size:53
Alignment explanation
Indices: 98822321--98822479 Score: 219
Period size: 55 Copynumber: 2.9 Consensus size: 53
98822311 CCGAGGCTCT
* *
98822321 ACTCACCTCTTGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGACTCA
1 ACTCACCTCTTGCAATATGAGTTAATTTTTG-AAAACATAAATTAAAAGACTCA
*
98822375 ACTCACTTCTTGCAATATGAGTTAACTTTTTGAAGAACATAAATTAAAAGACTCA
1 ACTCACCTCTTGCAATATGAGTTAA-TTTTTGAA-AACATAAATTAAAAGACTCA
* *
98822430 ACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCATAAATTAAAA
1 ACTCACCTCTTGCAATATGAGTT-A-ATTTTTGAAAA-CATAAATTAAAA
98822480 ACAAAATTTG
Statistics
Matches: 94, Mismatches: 6, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
54 25 0.27
55 48 0.51
56 21 0.22
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (53 bp):
ACTCACCTCTTGCAATATGAGTTAATTTTTGAAAACATAAATTAAAAGACTCA
Found at i:98822638 original size:86 final size:89
Alignment explanation
Indices: 98822488--98822662 Score: 234
Period size: 86 Copynumber: 2.0 Consensus size: 89
98822478 AAACAAAATT
* * *
98822488 TGAAATACAGAATCTGAAAATACCTCGGTATGTGACCCGAGACTCAACTCACTTCTTGCAATATG
1 TGAAATACAGAATCTGAAAATACCTCAGCATGT-ACCCGAGACTCAACTCACTTCTCGCAATATG
98822553 AATTGA-TTTTTGAAAAATATAAAC
65 AATTGATTTTTTGAAAAATATAAAC
* *
98822577 TGAAA-ACAGAAAT-TGAAAATACCTCAGCATGT-CCTGAGGCTCAACTCACCTT-TCGCAATAT
1 TGAAATACAG-AATCTGAAAATACCTCAGCATGTACCCGAGACTCAACTCA-CTTCTCGCAATAT
*
98822638 GAGTTGATTTTTTGAAAAATATAAA
64 GAATTGATTTTTTGAAAAATATAAA
98822663 TTAAAATTAC
Statistics
Matches: 77, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
86 28 0.36
87 20 0.26
88 21 0.27
89 8 0.10
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (89 bp):
TGAAATACAGAATCTGAAAATACCTCAGCATGTACCCGAGACTCAACTCACTTCTCGCAATATGA
ATTGATTTTTTGAAAAATATAAAC
Found at i:98822697 original size:74 final size:73
Alignment explanation
Indices: 98822577--98822814 Score: 313
Period size: 70 Copynumber: 3.2 Consensus size: 73
98822567 AAATATAAAC
* * * * *
98822577 TGAAAACAGAAATTGAAAA-TACCTCAGCATGTCCTGAGGCTCAACTCACCTTTCGCAATATGAG
1 TGAAAACATAAATT-AAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
98822641 TTGATTTTT
65 TTGATTTTT
*
98822650 TGAAAAATATAAATTAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TG-AAAACATAAATTAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAG
98822715 TTGA--TTT
65 TTGATTTTT
* * *
98822722 TG-GAACATAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGC
1 TGAAAACATAAATTAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
98822786 TGATTTTCT
66 TGATTTT-T
*
98822795 TGAGAAGCATAAATTGAAAA
1 TGA-AAACATAAATT-AAAA
98822815 GCAGAAATTA
Statistics
Matches: 144, Mismatches: 13, Indels: 13
0.85 0.08 0.08
Matches are distributed among these distances:
70 61 0.42
72 7 0.05
73 9 0.06
74 55 0.38
75 9 0.06
76 3 0.02
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (73 bp):
TGAAAACATAAATTAAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGT
TGATTTTT
Found at i:98822935 original size:83 final size:83
Alignment explanation
Indices: 98822730--98822971 Score: 333
Period size: 83 Copynumber: 2.8 Consensus size: 83
98822720 TTTGGAACAT
* * * *
98822730 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTCT
1 AAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT-T
98822795 TGAGAAGCATAAATTGAAAAGCAG
64 TGA-AA--A-AAATTGAAAAGCAG
*
98822819 AAATT-AAAGATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
1 AAATTGAAA-ATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
**
98822883 GAAAAACGTTGAAAAGCAG
65 GAAAAAAATTGAAAAGCAG
* *
98822902 AATTTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGG
1 AAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
98822967 AAAAA
66 AAAAA
98822972 TAATAATTAA
Statistics
Matches: 141, Mismatches: 10, Indels: 10
0.88 0.06 0.06
Matches are distributed among these distances:
83 75 0.53
84 4 0.03
86 2 0.01
87 4 0.03
88 6 0.04
89 50 0.35
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (83 bp):
AAATTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
AAAAAAATTGAAAAGCAG
Found at i:98823065 original size:102 final size:100
Alignment explanation
Indices: 98822891--98823072 Score: 260
Period size: 102 Copynumber: 1.8 Consensus size: 100
98822881 TTGAAAAACG
* *
98822891 TTGAAAAGCAGAATTTGAAAATACCTCAGCGTGCCTTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAGCAGAATTTGAAAATACCTCAGCGTGCCTCGAGGCTCAACTCACATCTCGCAATATGA
98822956 GTTGATTTTGGAAAAATAATAATTAAAAACAGAAT
66 GTTGATTTTGGAAAAATAATAATTAAAAACAGAAT
* * *
98822991 TTGAACAA-CAGAATTTTAAAATACCTCGGCATGTGACC-CGAGGTTCAACTCACATCTCGCAAT
1 TTGAA-AAGCAGAATTTGAAAATACCTCAGC--GTG-CCTCGAGGCTCAACTCACATCTCGCAAT
*
98823054 ATGAGTTGATTTTTGAAAA
62 ATGAGTTGATTTTGGAAAA
98823073 CATGAATTAA
Statistics
Matches: 72, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
100 25 0.35
101 2 0.03
102 43 0.60
103 2 0.03
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (100 bp):
TTGAAAAGCAGAATTTGAAAATACCTCAGCGTGCCTCGAGGCTCAACTCACATCTCGCAATATGA
GTTGATTTTGGAAAAATAATAATTAAAAACAGAAT
Found at i:98831501 original size:12 final size:12
Alignment explanation
Indices: 98831481--98831516 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
98831471 TGGGATATGC
*
98831481 AATGTATGAATG
1 AATGCATGAATG
98831493 AATGCATGAATG
1 AATGCATGAATG
98831505 AATGCATGAATG
1 AATGCATGAATG
98831517 TCAAAATGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:98835931 original size:20 final size:22
Alignment explanation
Indices: 98835892--98835941 Score: 68
Period size: 20 Copynumber: 2.4 Consensus size: 22
98835882 ATAATATAAA
*
98835892 ATATAATATTAAGAACACATGT
1 ATATAATATTAAGAACACATAT
*
98835914 ATATAATA-TATGAA-ACATAT
1 ATATAATATTAAGAACACATAT
98835934 ATATAATA
1 ATATAATA
98835942 AAATATTAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 13 0.50
21 5 0.19
22 8 0.31
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.34
Consensus pattern (22 bp):
ATATAATATTAAGAACACATAT
Found at i:98836565 original size:25 final size:24
Alignment explanation
Indices: 98836530--98836579 Score: 66
Period size: 23 Copynumber: 2.0 Consensus size: 24
98836520 GCAGTTAAAA
98836530 AAAAAGAGAGAGAAATGAGAGAGGGG
1 AAAAAGAGAGAG-AATG-GAGAGGGG
*
98836556 AAAAAG-GAGAGAGTGGAGAGGGG
1 AAAAAGAGAGAGAATGGAGAGGGG
98836579 A
1 A
98836580 GTGCTCCGGC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 9 0.39
24 3 0.13
25 5 0.22
26 6 0.26
ACGTcount: A:0.50, C:0.00, G:0.46, T:0.04
Consensus pattern (24 bp):
AAAAAGAGAGAGAATGGAGAGGGG
Found at i:98844280 original size:18 final size:17
Alignment explanation
Indices: 98844259--98844313 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 17
98844249 GTGAATTGTT
98844259 ATTGAATTGAAAATTGAA
1 ATTGAATTGAAAA-TGAA
98844277 ATTGAAATT-AAAATGTAA
1 ATTG-AATTGAAAATG-AA
98844295 ATTG-ATTGGAAAAGTGAA
1 ATTGAATT-GAAAA-TGAA
98844313 A
1 A
98844314 CAAATAGAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
16 3 0.09
17 2 0.06
18 21 0.66
19 6 0.19
ACGTcount: A:0.51, C:0.00, G:0.18, T:0.31
Consensus pattern (17 bp):
ATTGAATTGAAAATGAA
Found at i:98844510 original size:20 final size:20
Alignment explanation
Indices: 98844485--98844523 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
98844475 TTGATTGGAC
98844485 AATAAAAA-AAATATAAATTG
1 AATAAAAATAAAT-TAAATTG
98844505 AATAAAAATAAATTAAATT
1 AATAAAAATAAATTAAATT
98844524 ATGAATATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 14 0.78
21 4 0.22
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (20 bp):
AATAAAAATAAATTAAATTG
Found at i:98844668 original size:5 final size:5
Alignment explanation
Indices: 98844652--98844691 Score: 53
Period size: 5 Copynumber: 7.8 Consensus size: 5
98844642 GAAAGTGGAA
* *
98844652 AATTG AATTTG AATTG AATTG AATTG AATGG AATGG AATT
1 AATTG AA-TTG AATTG AATTG AATTG AATTG AATTG AATT
98844692 ATGATTAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
5 27 0.84
6 5 0.16
ACGTcount: A:0.40, C:0.00, G:0.23, T:0.38
Consensus pattern (5 bp):
AATTG
Found at i:98845164 original size:45 final size:45
Alignment explanation
Indices: 98845100--98845237 Score: 215
Period size: 45 Copynumber: 3.1 Consensus size: 45
98845090 CTGTTACCGC
* *
98845100 TACTGCTACTGTTACCGATTCGGCACTTTGTGTGTCGAATATTAG-
1 TACTGTTACAGTTACCGATTCGGCACTTTGTGTGTCGAATATT-GT
*
98845145 TACTGTTACAGTTACCGATTCGGTACTTTGTGTGTCGAATATTGT
1 TACTGTTACAGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
* *
98845190 TACTGTTACCGTTACCGATTCGGCACTTTGTGTGTCGGATATTGT
1 TACTGTTACAGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
98845235 TAC
1 TAC
98845238 CGTACTATTA
Statistics
Matches: 86, Mismatches: 6, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
44 1 0.01
45 85 0.99
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.40
Consensus pattern (45 bp):
TACTGTTACAGTTACCGATTCGGCACTTTGTGTGTCGAATATTGT
Found at i:98845303 original size:51 final size:53
Alignment explanation
Indices: 98845240--98845358 Score: 134
Period size: 51 Copynumber: 2.3 Consensus size: 53
98845230 ATTGTTACCG
* * *
98845240 TACTATTACTGTTTCAGATTCGTTCCGAAGAGGCACT-T-CGTACCTTACTAT
1 TACTGTTACTGTTTCAGATTCGTTCCGAAGAGGCACTCTGCGTACCGTACTAC
* * * * * * *
98845291 TACTGTTACTGTTCCGGATTTGTTCCGATGAGGTACTCTGTGTACCGTACTGC
1 TACTGTTACTGTTTCAGATTCGTTCCGAAGAGGCACTCTGCGTACCGTACTAC
98845344 TACTGTTACTGTTTC
1 TACTGTTACTGTTTC
98845359 TGTTCCGGCT
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
51 31 0.56
52 1 0.02
53 23 0.42
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.39
Consensus pattern (53 bp):
TACTGTTACTGTTTCAGATTCGTTCCGAAGAGGCACTCTGCGTACCGTACTAC
Found at i:98845715 original size:18 final size:19
Alignment explanation
Indices: 98845692--98845730 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
98845682 TGGAATTAAG
*
98845692 AATTGAAATGTGA-ATTGA
1 AATTGAAATATGAGATTGA
*
98845710 AATTGAGATATGAGATTGA
1 AATTGAAATATGAGATTGA
98845729 AA
1 AA
98845731 GCTTGAACCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.46, C:0.00, G:0.23, T:0.31
Consensus pattern (19 bp):
AATTGAAATATGAGATTGA
Found at i:98857205 original size:34 final size:34
Alignment explanation
Indices: 98857162--98857230 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
98857152 TTAATGATCC
98857162 ATTGGGATTCAAAAAACAAGCATATCCAATTTAA
1 ATTGGGATTCAAAAAACAAGCATATCCAATTTAA
* *
98857196 ATTGGGATTCAGAAAATAAGCATATCCAATTTAA
1 ATTGGGATTCAAAAAACAAGCATATCCAATTTAA
98857230 A
1 A
98857231 GCATTTGTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.28
Consensus pattern (34 bp):
ATTGGGATTCAAAAAACAAGCATATCCAATTTAA
Found at i:98863676 original size:104 final size:101
Alignment explanation
Indices: 98863414--98863677 Score: 433
Period size: 102 Copynumber: 2.6 Consensus size: 101
98863404 TAACCGTTAT
98863414 TGGTGGATC-CGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATCACGCACTTAGCACCACCA-TGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
98863478 AATCAGCACATAGCAACCCCCTTTCATTTCAAAGATA
65 AATCAGCACATAGCAACCCCCTTTCATTTCAAAGATA
98863515 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 TGGTGGATCA-CGCACTTAGCACCACC-ATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
98863579 GAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
64 GAATCAGCACATAGCAACCCCCTTT--CATTTCAAAGATA
* **
98863619 TGGTGGATCACGCACATAGCACCACCATGAAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGATCACGCACTTAGCACCACCATG-AATCGGGGAATCAGCACTTAGCAACCCCT
98863678 TTTATATACA
Statistics
Matches: 153, Mismatches: 3, Indels: 11
0.92 0.02 0.07
Matches are distributed among these distances:
101 8 0.05
102 77 0.50
103 4 0.03
104 63 0.41
105 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (101 bp):
TGGTGGATCACGCACTTAGCACCACCATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCATTTCAAAGATA
Found at i:98864035 original size:29 final size:29
Alignment explanation
Indices: 98864002--98864065 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
98863992 TAATCCACCA
98864002 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
98864031 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
98864061 CCCAA
1 CCCAA
98864066 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:98864039 original size:30 final size:30
Alignment explanation
Indices: 98864009--98864065 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
98863999 CCACCCAACT
98864009 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
98864038 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
98864066 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:98871067 original size:99 final size:103
Alignment explanation
Indices: 98870885--98871145 Score: 399
Period size: 99 Copynumber: 2.6 Consensus size: 103
98870875 TAACCGTTAT
* *
98870885 TGGTGGATCTCGCACTTAGCACCACCACTGAATCGGGGAATCATCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCA-TGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
*
98870950 AATCAGCACATAGCAACCCCCTTT-TCATTTC-AAGATA
65 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
98870987 TGGT-GATATCGCACTTAGCACCACCATGAA-CGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
1 TGGTGGATATCGCACTTAGCACCACCATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
98871050 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* **
98871088 TGGTGGATCA-CGCACATAGCACCACCCAT-AATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCA-CCATGAATCGGGGAATCAGCACTTAGCAACCCCT
98871146 TTTATATACA
Statistics
Matches: 147, Mismatches: 6, Indels: 11
0.90 0.04 0.07
Matches are distributed among these distances:
99 55 0.37
100 10 0.07
101 31 0.21
102 22 0.15
103 29 0.20
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.20
Consensus pattern (103 bp):
TGGTGGATATCGCACTTAGCACCACCATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGGA
ATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:98871504 original size:28 final size:29
Alignment explanation
Indices: 98871472--98871534 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
98871462 TAATCCACCA
98871472 CCCAACTTTTTG-AAAATTACAATTTTG-C
1 CCCAAC-TTTTGCAAAATTACAATTTTGTC
* *
98871500 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGTC
98871530 CCCAA
1 CCCAA
98871535 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
28 8 0.27
29 18 0.60
30 4 0.13
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.37
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGTC
Found at i:98871508 original size:29 final size:30
Alignment explanation
Indices: 98871479--98871534 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
98871469 CCACCCAACT
98871479 TTTTG-AAAATTACAATTTTG-CCCCAAAC
1 TTTTGCAAAATTACAATTTTGTCCCCAAAC
* *
98871507 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGTCCCCAA
98871535 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 5 0.21
29 13 0.54
30 6 0.25
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGTCCCCAAAC
Found at i:98877347 original size:26 final size:25
Alignment explanation
Indices: 98877317--98877382 Score: 64
Period size: 24 Copynumber: 2.6 Consensus size: 25
98877307 CAACAATATC
*
98877317 AATATTATATCATATAGGATCAAATG
1 AATATTATATCATATAGGAACAAA-G
* * *
98877343 TATA-TA-ATCACATAGGAACATAG
1 AATATTATATCATATAGGAACAAAG
98877366 AATCATTATATCATATA
1 AAT-ATTATATCATATA
98877383 TGAAATTACA
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
23 3 0.10
24 14 0.45
25 4 0.13
26 10 0.32
ACGTcount: A:0.47, C:0.11, G:0.09, T:0.33
Consensus pattern (25 bp):
AATATTATATCATATAGGAACAAAG
Found at i:98886395 original size:265 final size:264
Alignment explanation
Indices: 98885047--98887042 Score: 2737
Period size: 264 Copynumber: 7.6 Consensus size: 264
98885037 AAAAAAAAAA
* *
98885047 ACATATCCAATTTAAAGCATTTGTCAATGTAATAATATTTTTTT-AAGGTAACAAAGAATTCCGA
1 ACATATCCAATTTAAAGCATTTGTCAATGTAATAATATTTTTTTCAAGGTAACAAAGAGTTCCAA
* * * * *
98885111 TTCATCGTCGAAAT-TAGTTCAAACAAAACCGGATTCGG-GGAATAGGGATAGCACTTTAAGAGG
66 TTCATCGCCGAAATCT-GTCCAAAGAAAACCGGATTTGGAGGAATAGGGATAGCACTTTAAGAGA
* *
98885174 CTAAAGTACAACAACACCTACTAGGAAACAAGCATGGAGATGGGGGGGCTAATGATTCAATCAAC
130 CTAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGAT-TGGGGGCTAATGATTCAATCAAC
* *
98885239 ACTAAGAACATAGCAGCATTGCATCACACACACATATATAAATAAGTGCATGCATTCTCACAGCT
194 ACTAAGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATGCATTCTCACAGCT
*
98885304 GAACGT
259 GAATGT
* * * * * * **
98885310 ACATATTCAATTGAAAACA--TGTCAATGTAATAATATTCCTTTTAAAGGTAACAAAGAGCTCTG
1 ACATATCCAATTTAAAGCATTTGTCAATGTAATAATATT-TTTTTCAAGGTAACAAAGAGTTCCA
*** *
98885373 ATTCATCGCCGAAAT-TGGTCCAAAGAAAATAAGATTTAGG-GGAATAGGGATAGAACTTTAAGA
65 ATTCATCGCCGAAATCT-GTCCAAAGAAAACCGGATTT-GGAGGAATAGGGATAGCACTTTAAGA
* * * *
98885436 GACTAAAGCACAACAACACCTGCTAGGAAACAAGCATGGAGATCGGGGGCTAATGGTTCAACCAA
128 GACTAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATTGGGGGCTAATGATTCAATCAA
* * * ** * *
98885501 CACTAAGAACATAACTGTATTGCATCACACTTACATATATAAATAAATGTGTGCATTCTCACAGT
193 CACTAAGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATGCATTCTCACAGC
*
98885566 TGAATCT
258 TGAATGT
* *
98885573 ACATATCCAATTTAAAGCATTTGTCAATGTAATAA-AGTTTTTTTCAAGGTAACAAAGAGTTTCG
1 ACATATCCAATTTAAAGCATTTGTCAATGTAATAATA-TTTTTTTCAAGGTAACAAAGAGTTCCA
* * * * * *
98885637 ATTCATCGCCGAAATCGGTCCAAA-AAAACCGAATTCGGGGGAATAGGGATAGCACTATAAGAAA
65 ATTCATCGCCGAAATCTGTCCAAAGAAAACCGGATTTGGAGGAATAGGGATAGCACTTTAAGAGA
* * ** **
98885701 CTAAAGTACAGCAACACCTGCTAGGAAACAAGCGTGGAGACCGGGGGCTAATGATTCAAAAAACA
130 CTAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATTGGGGGCTAATGATTCAATCAACA
*
98885766 CTAAGAACATAGCAGCATTGCAT--CACACACATATATAAATAAATGTATACATTCTCACAGCTG
195 CTAAGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATGCATTCTCACAGCTG
98885829 AATGT
260 AATGT
* *
98885834 ACATATCCAATTTAAAGCATTTGTCAATGTAATACTATTATTTTTCAAGATAACAAAGAGTTCCA
1 ACATATCCAATTTAAAGCATTTGTCAATGTAATAATATT-TTTTTCAAGGTAACAAAGAGTTCCA
*
98885899 ATTCATCGCCCAAATCTGTCCAAAGAAAACCGGATTTGGAGGAATAGGGATAGCACTTTTAAGAG
65 ATTCATCGCCGAAATCTGTCCAAAGAAAACCGGATTTGGAGGAATAGGGATAGCAC-TTTAAGAG
* * *
98885964 ACTAAAGTACAAAAACACCTGCTAGAAAACAAGCATGGAGATTGGGGGCTAATGATCCAATCAAC
129 ACTAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATTGGGGGCTAATGATTCAATCAAC
* * * *
98886029 ACTAAGAACATAGTAGCAGTGCATCACACAGACATATAAAAATAAATGTATGCATTCTCACAGCT
194 ACTAAGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATGCATTCTCACAGCT
98886094 GAATGT
259 GAATGT
* *
98886100 ACATATCCAATTTAAAGCATTTGTCAATGTAATAATATTGTCTTTCAAGGTAACAAAGATTTCCA
1 ACATATCCAATTTAAAGCATTTGTCAATGTAATAATATT-TTTTTCAAGGTAACAAAGAGTTCCA
*
98886165 ATTCATCGCCCAAATCTGTCCAAAGAAAACCGGATTTGGAGGAATAGGGATAGCACTTTAAGAGA
65 ATTCATCGCCGAAATCTGTCCAAAGAAAACCGGATTTGGAGGAATAGGGATAGCACTTTAAGAGA
* * * *
98886230 CTAAAGTACAACACCACCTGCTAGGGAACAAGCATAGAGATTGGGGGCTAATGATTCTATCAACA
130 CTAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATTGGGGGCTAATGATTCAATCAACA
* * * * * *
98886295 CTAAGAACATAGCAGCAGTGCATCACACACACATAAATAAATAAATGTAAGCATTTTCACAGTTA
195 CTAAGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATGCATTCTCACAGCTG
98886360 AATGT
260 AATGT
*
98886365 ACATATCCAATTTAAAGCATTTGCCAATGTAATAATATTATTTTTCAAGGTAACAAAGAGTTCCA
1 ACATATCCAATTTAAAGCATTTGTCAATGTAATAATATT-TTTTTCAAGGTAACAAAGAGTTCCA
* * * * ** *
98886430 ATTTATTGCCGAAATCAGTCCAAAGGAAACCGGATACGGGGGAATAGGGATAGCACTTTAAGAGA
65 ATTCATCGCCGAAATCTGTCCAAAGAAAACCGGATTTGGAGGAATAGGGATAGCACTTTAAGAGA
* * * *
98886495 CTAAAGTACAACAACACTTTCTAGGAAACAAGCATGGAGA-TCGGGGTTAATGATTCAATCAACA
130 CTAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATTGGGGGCTAATGATTCAATCAACA
* * * *
98886559 CTAAGAACATAGCAGCAATGCATCACACAGACAGACATAAATAAATGTATGCATTCTCACAGCTG
195 CTAAGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATGCATTCTCACAGCTG
98886624 AATGT
260 AATGT
*
98886629 ACATATCCAATTTAAAGCATTTGTCAATGTAATAATTTTTTTTTCAAGGTAACAAAGAGTTCCAA
1 ACATATCCAATTTAAAGCATTTGTCAATGTAATAATATTTTTTTCAAGGTAACAAAGAGTTCCAA
* * * *
98886694 TTCATTGCCCAAATCTGTCCAAAGAAAACCGGA-TTCGAGGAAATAGGGATAGTACTTTAAGAGA
66 TTCATCGCCGAAATCTGTCCAAAGAAAACCGGATTTGGAGG-AATAGGGATAGCACTTTAAGAGA
98886758 CTAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATTGGGGGCTAATGATTCAATCAACA
130 CTAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATTGGGGGCTAATGATTCAATCAACA
* *
98886823 GTAAGAACATAGCAACATTGCATCACGA-ACACATATATAAATAAATGTATGCATTCTCACAGCT
195 CTAAGAACATAGCAGCATTGCATCAC-ACACACATATATAAATAAATGTATGCATTCTCACAGCT
98886887 GAATGT
259 GAATGT
* * * * *
98886893 ACATATCCGATTTCAAGCATTTAAT-AATGTAATAATATTATTTTTCAAGGCATCAAAGAGTTCC
1 ACATATCCAATTTAAAGCATTT-GTCAATGTAATAATATT-TTTTTCAAGGTAACAAAGAGTTCC
* * * * * ** * *
98886957 GATTCATTGCTGAAATCGGTCCAAAGGAAACCGGA-TACGAGGGAGTAGGTATAGCACTTTAAGA
64 AATTCATCGCCGAAATCTGTCCAAAGAAAACCGGATTTGGA-GGAATAGGGATAGCACTTTAAGA
*
98887021 GACTAAAGTACAACAACTCCTG
128 GACTAAAGTACAACAACACCTG
98887043 TTTATGATCA
Statistics
Matches: 1537, Mismatches: 176, Indels: 38
0.88 0.10 0.02
Matches are distributed among these distances:
261 93 0.06
262 54 0.04
263 407 0.26
264 428 0.28
265 395 0.26
266 160 0.10
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (264 bp):
ACATATCCAATTTAAAGCATTTGTCAATGTAATAATATTTTTTTCAAGGTAACAAAGAGTTCCAA
TTCATCGCCGAAATCTGTCCAAAGAAAACCGGATTTGGAGGAATAGGGATAGCACTTTAAGAGAC
TAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATTGGGGGCTAATGATTCAATCAACAC
TAAGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATGCATTCTCACAGCTGA
ATGT
Found at i:98892098 original size:12 final size:13
Alignment explanation
Indices: 98892081--98892117 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
98892071 GAACCGGACA
98892081 CGAACCGAA-CTC
1 CGAACCGAAGCTC
98892093 CGAACC-AAGCTC
1 CGAACCGAAGCTC
*
98892105 CGAACCGTAGCTC
1 CGAACCGAAGCTC
98892118 TGATGCCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.68
13 5 0.23
ACGTcount: A:0.30, C:0.41, G:0.19, T:0.11
Consensus pattern (13 bp):
CGAACCGAAGCTC
Found at i:98895131 original size:4 final size:4
Alignment explanation
Indices: 98895108--98895141 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
98895098 GAAAAAAGGT
* *
98895108 AATA AACA AATA AATG AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AATA AA
98895142 AACAATTTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (4 bp):
AATA
Found at i:98896286 original size:13 final size:13
Alignment explanation
Indices: 98896268--98896298 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
98896258 TTTTTCAAAG
98896268 CACTTCTCAAAAA
1 CACTTCTCAAAAA
98896281 CACTTCTCAAAAA
1 CACTTCTCAAAAA
*
98896294 TACTT
1 CACTT
98896299 TTCCACAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.42, C:0.29, G:0.00, T:0.29
Consensus pattern (13 bp):
CACTTCTCAAAAA
Found at i:98900466 original size:264 final size:263
Alignment explanation
Indices: 98899761--98901557 Score: 1348
Period size: 265 Copynumber: 6.6 Consensus size: 263
98899751 AAAAAAGCAG
* *
98899761 CATATCCAATTTAAAGCATTTGTCAATGTAATAATAAATAATATTTTCTTTAAGGTAACAAAGAA
1 CATATCCAATTTAAAGCATTTGTCAATGTAAT-AT---T-AT-TTTT-TTCAAGGTAACAAAGAG
* * * *
98899826 TTCCAATTCATCGTCGAAATCGGTCCAAAGAAAACTGGATTCGGGGGAATAGGGATAGCACTTTA
59 TTCCGATTCATCGCCGAAATCAGTCCAAAGAAAACTGGATTC-GGCGAATAGGGATAGCACTTTA
* * *
98899891 AGAGACTAAAGTACAACAACACTTGCTAGGAAACAAGCATGGAGATGGGGGGCTAATGATTTAAT
123 AGAGACTAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATCGGGGGCTAATGATTCAAT
* *
98899956 CAACACTAAGAACATAGCAGCATTGCATCACACACACATATATAAAGAAATGTATGCATTCTTAC
188 CAACACTAAGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATGCATTCTCAC
98900021 AGCTGAACGTA
253 AGCTGAACGTA
* * *
98900032 TATATCCAATTTAAAGCATTTGTCAATGTAATAATATTCCTTTTCAAGGTAACAAAGAGTTCCGA
1 CATATCCAATTTAAAGCATTTGTCAATGTAATATTATT-TTTTTCAAGGTAACAAAGAGTTCCGA
* * * * * *
98900097 TTCATCGCCGAAATCAATCCAAAGAAAACAGGATTAGGGCGAATACGGATAGCATTTTAAGAAAC
65 TTCATCGCCGAAATCAGTCCAAAGAAAACTGGATT-CGGCGAATAGGGATAGCACTTTAAGAGAC
* *
98900162 TAAAGTACAATAACACCTGCTAGGAAACAAGCATGGAGATCGGGGGCAAATGATTCAATCAACAC
129 TAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATCGGGGGCTAATGATTCAATCAACAC
*
98900227 TAAGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATCCATTCTCACAGCTGA
194 TAAGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATGCATTCTCACAGCTGA
98900292 ATC-TA
259 A-CGTA
*
98900297 CATATCCAATTTAAAACATTTGTCAATGTAATATTATTTTTTTCAAGGTAACAAAGAGTTCCGAT
1 CATATCCAATTTAAAGCATTTGTCAATGTAATATTATTTTTTTCAAGGTAACAAAGAGTTCCGAT
* *
98900362 TTATTGCCGAAATCAGTCCAAAGAAAACTGGATTCGGCAGAATAGGGATAGCACTTTAAGAGACT
66 TCATCGCCGAAATCAGTCCAAAGAAAACTGGATTCGGC-GAATAGGGATAGCACTTTAAGAGACT
98900427 AAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATCGGGGGCTAATGATTCAATCAACACT
130 AAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATCGGGGGCTAATGATTCAATCAACACT
98900492 AAGAACATAGCAGCATTGCAT--CACACACATATATAAATAAATGTATGCATTCTCACAGCTGAA
195 AAGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATGCATTCTCACAGCTGAA
98900555 CGTA
260 CGTA
* ** * * * *
98900559 CATATCCAATTTAAAGCATTTGTCAATATAAATAAATGTATGCATTCTCACAGCTGAATC-TACA
1 CATATCCAATTTAAAGCATTTGTCAATGT-AAT--AT-TAT-TTTTTTCA-AGGT-AA-CAAAGA
* ** ** * * *** * * **
98900623 -TATCCAATT--T---AAAACATTTGT-CAATGTAATATTATTTTTTTTCAAGG-TAACAAAGAG
58 GT-TCCGATTCATCGCCGAA-ATCAGTCCAAAG-AA-A--A-CTGGATTC--GGCGAATAGGGA-
** * * * * * ** * * * * * *
98900680 TTCCGA-TTTATTGACGA--AATCAGTCCAAAGAAAACCGAATTCGGGGGAATAGGGATAGCACT
113 TAGC-ACTTTA-AGA-GACTAA--AGTAC-AACAACACC---TGCTAGGAAACAAGCAT-GGA-G
* ** * * * * * * * *
98900742 TTAAGAGACTAAAG-TACAA-CAACACCTGCTAGGAAACA-AGCATGGAGATCGGGGGCTAATGA
167 ATCGGGGGCTAATGATTCAATCAACA----CTAAG-AACATAGCA--G-CAT----TGC--ATCA
* * * * * * * *
98900804 TTCA-ATCAACACTACGA-ACATAGCA-GCATTGCA-TCACACACACATATATAAATAAATGTA
218 --CACA-C-ACA-TA-TATAAATA-AATGTA-TGCATTCTCACA-GC---------TGAACGTA
* * * * *
98900864 TGCAT-TCTCACAGCTGAACGTACATATCCAATTTAAAGCATTTGTCAATGTAATAATATTTATT
1 --CATATC-CA-A-TTTAAAG--CAT-T----TGT----CA-ATGT-AA--T-AT--TATTT-TT
* * * * ** * * *
98900928 TTCAAGGTAACAAAGAGTTCTGATTCATCCCCAAAATCGGTCTGAAGAAAACCGGATTAAGGGGA
42 TTCAAGGTAACAAAGAGTTCCGATTCATCGCCGAAATCAGTCCAAAGAAAACTGGATT-CGGCGA
* * * *
98900993 ACAGGGATAGCGCTTTAAGAGATTAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATCA
106 ATAGGGATAGCACTTTAAGAGACTAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATCG
* *
98901058 GAGGCTAATGATTCAATCAACACTAAGAACATAGTAGCATTGCATCACACACAC--ATATAAATA
171 GGGGCTAATGATTCAATCAACACTAAGAACATAGCAGCATTGCATCACACACACATATATAAATA
* *
98901121 AATGTATGCATTCTCACAGTTGAATGTA
236 AATGTATGCATTCTCACAGCTGAACGTA
* * *
98901149 CATATCCATTTTAAAGCATTTGTCAATGTAATAATATTTATTTTCAAGGTAACAAAGAGTTCTGA
1 CATATCCAATTTAAAGCATTTGTCAATGTAATATTATTT-TTTTCAAGGTAACAAAGAGTTCCGA
* * * * * * *
98901214 TTCATCCCCGAAATCGGTCCAAAAAAAACCGGATTAGGGGAATAGGGATAGCACTTCAAGAGACT
65 TTCATCGCCGAAATCAGTCCAAAGAAAACTGGATTCGGCGAATAGGGATAGCACTTTAAGAGACT
* * *
98901279 AAAGTCCAACATCA-CTGCTAGGAAACAAGCATGGAGATCAGGGGCTAATGATTCAATCAACACT
130 AAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATCGGGGGCTAATGATTCAATCAACACT
*
98901343 AAGAACATAGCAGCATTGCAT--CACACACATATAGAAATAAATGTATGCATTCTCACAGCTGAA
195 AAGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATGCATTCTCACAGCTGAA
**
98901406 TATA
260 CGTA
* * *
98901410 CATATCCAATTTAAAGCA-TTGTCAATATAATAATATTTATTTTCAAGGTAACAAAGAGTTCCAA
1 CATATCCAATTTAAAGCATTTGTCAATGTAATATTATTT-TTTTCAAGGTAACAAAGAGTTCCGA
* * *
98901474 TTCATCGCCGAAATCGGTCCAAAGAAAACCGGATTCGGGGGAATAGGGATAGCACTTTAAGAGAC
65 TTCATCGCCGAAATCAGTCCAAAGAAAACTGGATTC-GGCGAATAGGGATAGCACTTTAAGAGAC
*
98901539 TAAAGTACAATAACACCTG
129 TAAAGTACAACAACACCTG
98901558 TTTAGCATTA
Statistics
Matches: 1221, Mismatches: 191, Indels: 237
0.74 0.12 0.14
Matches are distributed among these distances:
259 7 0.01
260 76 0.06
261 160 0.13
262 111 0.09
263 68 0.06
264 169 0.14
265 245 0.20
266 10 0.01
267 7 0.01
268 7 0.01
269 22 0.02
270 12 0.01
271 36 0.03
272 6 0.00
273 7 0.01
274 2 0.00
276 15 0.01
277 6 0.00
278 9 0.01
279 3 0.00
280 8 0.01
281 8 0.01
282 1 0.00
283 7 0.01
284 2 0.00
285 7 0.01
287 2 0.00
289 2 0.00
292 1 0.00
293 3 0.00
294 9 0.01
295 27 0.02
296 7 0.01
298 2 0.00
299 3 0.00
300 1 0.00
301 3 0.00
303 2 0.00
305 6 0.00
306 2 0.00
307 7 0.01
308 2 0.00
309 8 0.01
310 7 0.01
311 3 0.00
312 11 0.01
313 6 0.00
314 15 0.01
316 2 0.00
317 7 0.01
318 6 0.00
319 2 0.00
320 13 0.01
321 21 0.02
322 8 0.01
323 10 0.01
324 1 0.00
325 6 0.00
326 5 0.00
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.26
Consensus pattern (263 bp):
CATATCCAATTTAAAGCATTTGTCAATGTAATATTATTTTTTTCAAGGTAACAAAGAGTTCCGAT
TCATCGCCGAAATCAGTCCAAAGAAAACTGGATTCGGCGAATAGGGATAGCACTTTAAGAGACTA
AAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATCGGGGGCTAATGATTCAATCAACACTA
AGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATGCATTCTCACAGCTGAAC
GTA
Found at i:98900593 original size:62 final size:62
Alignment explanation
Indices: 98900522--98900647 Score: 227
Period size: 62 Copynumber: 2.0 Consensus size: 62
98900512 TCACACACAT
*
98900522 ATATAAATAAATGTATGCATTCTCACAGCTGAA-CGTACATATCCAATTTAAAGCATTTGTCA
1 ATATAAATAAATGTATGCATTCTCACAGCTGAATC-TACATATCCAATTTAAAACATTTGTCA
98900584 ATATAAATAAATGTATGCATTCTCACAGCTGAATCTACATATCCAATTTAAAACATTTGTCA
1 ATATAAATAAATGTATGCATTCTCACAGCTGAATCTACATATCCAATTTAAAACATTTGTCA
98900646 AT
1 AT
98900648 GTAATATTAT
Statistics
Matches: 62, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
62 61 0.98
63 1 0.02
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (62 bp):
ATATAAATAAATGTATGCATTCTCACAGCTGAATCTACATATCCAATTTAAAACATTTGTCA
Found at i:98901414 original size:261 final size:263
Alignment explanation
Indices: 98900584--98901557 Score: 1558
Period size: 265 Copynumber: 3.7 Consensus size: 263
98900574 GCATTTGTCA
* *
98900584 ATATAAATAAATGTATGCATTCTCACAGCTGAATCTACATATCCAATTTAAAACATTTGTCAATG
1 ATATAAATAAATGTATGCATTCTCACAGCTGAATGTACATATCCAATTTAAAGCATTTGTCAATG
* * * *** *
98900649 TAATATTATTTTTTTTCAAGGTAACAAAGAGTTCCGATTTATTGACGAAATCAGTCCAAAGAAAA
66 TAATAATATTTATTTTCAAGGTAACAAAGAGTTCCGATTCATCCCCGAAATCGGTCCAAAGAAAA
* *
98900714 CCGAATTCGGGGGAATAGGGATAGCACTTTAAGAGACTAAAGTACAACAACACCTGCTAGGAAAC
131 CCGGATTCAGGGGAATAGGGATAGCACTTTAAGAGACTAAAGTACAACAACACCTGCTAGGAAAC
* *
98900779 AAGCATGGAGATCGGGGGCTAATGATTCAATCAACACTACGAACATAGCAGCATTGCATCACACA
196 AAGCATGGAGATCAGGGGCTAATGATTCAATCAACACTAAGAACATAGCAGCATTGCAT--CACA
98900844 CACAT
259 CACAT
*
98900849 ATATAAATAAATGTATGCATTCTCACAGCTGAACGTACATATCCAATTTAAAGCATTTGTCAATG
1 ATATAAATAAATGTATGCATTCTCACAGCTGAATGTACATATCCAATTTAAAGCATTTGTCAATG
* * **
98900914 TAATAATATTTATTTTCAAGGTAACAAAGAGTTCTGATTCATCCCCAAAATCGGTCTGAAGAAAA
66 TAATAATATTTATTTTCAAGGTAACAAAGAGTTCCGATTCATCCCCGAAATCGGTCCAAAGAAAA
* * * *
98900979 CCGGATTAAGGGGAACAGGGATAGCGCTTTAAGAGATTAAAGTACAACAACACCTGCTAGGAAAC
131 CCGGATTCAGGGGAATAGGGATAGCACTTTAAGAGACTAAAGTACAACAACACCTGCTAGGAAAC
* *
98901044 AAGCATGGAGATCAGAGGCTAATGATTCAATCAACACTAAGAACATAGTAGCATTGCATCACACA
196 AAGCATGGAGATCAGGGGCTAATGATTCAATCAACACTAAGAACATAGCAGCATTGCATCACACA
*
98901109 CAC
261 CAT
* *
98901112 ATATAAATAAATGTATGCATTCTCACAGTTGAATGTACATATCCATTTTAAAGCATTTGTCAATG
1 ATATAAATAAATGTATGCATTCTCACAGCTGAATGTACATATCCAATTTAAAGCATTTGTCAATG
* *
98901177 TAATAATATTTATTTTCAAGGTAACAAAGAGTTCTGATTCATCCCCGAAATCGGTCCAAAAAAAA
66 TAATAATATTTATTTTCAAGGTAACAAAGAGTTCCGATTCATCCCCGAAATCGGTCCAAAGAAAA
* * *
98901242 CCGGATT-AGGGGAATAGGGATAGCACTTCAAGAGACTAAAGTCCAACATCA-CTGCTAGGAAAC
131 CCGGATTCAGGGGAATAGGGATAGCACTTTAAGAGACTAAAGTACAACAACACCTGCTAGGAAAC
98901305 AAGCATGGAGATCAGGGGCTAATGATTCAATCAACACTAAGAACATAGCAGCATTGCATCACACA
196 AAGCATGGAGATCAGGGGCTAATGATTCAATCAACACTAAGAACATAGCAGCATTGCATCACACA
98901370 CAT
261 CAT
* * *
98901373 ATAGAAATAAATGTATGCATTCTCACAGCTGAATATACATATCCAATTTAAAGCA-TTGTCAATA
1 ATATAAATAAATGTATGCATTCTCACAGCTGAATGTACATATCCAATTTAAAGCATTTGTCAATG
* *
98901437 TAATAATATTTATTTTCAAGGTAACAAAGAGTTCCAATTCATCGCCGAAATCGGTCCAAAGAAAA
66 TAATAATATTTATTTTCAAGGTAACAAAGAGTTCCGATTCATCCCCGAAATCGGTCCAAAGAAAA
* *
98901502 CCGGATTCGGGGGAATAGGGATAGCACTTTAAGAGACTAAAGTACAATAACACCTG
131 CCGGATTCAGGGGAATAGGGATAGCACTTTAAGAGACTAAAGTACAACAACACCTG
98901558 TTTAGCATTA
Statistics
Matches: 652, Mismatches: 55, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
260 76 0.12
261 167 0.26
262 41 0.06
263 138 0.21
265 230 0.35
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.26
Consensus pattern (263 bp):
ATATAAATAAATGTATGCATTCTCACAGCTGAATGTACATATCCAATTTAAAGCATTTGTCAATG
TAATAATATTTATTTTCAAGGTAACAAAGAGTTCCGATTCATCCCCGAAATCGGTCCAAAGAAAA
CCGGATTCAGGGGAATAGGGATAGCACTTTAAGAGACTAAAGTACAACAACACCTGCTAGGAAAC
AAGCATGGAGATCAGGGGCTAATGATTCAATCAACACTAAGAACATAGCAGCATTGCATCACACA
CAT
Found at i:98904806 original size:21 final size:21
Alignment explanation
Indices: 98904780--98904820 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
98904770 ATCTGCTCAA
* *
98904780 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
98904801 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
98904821 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:98905588 original size:14 final size:14
Alignment explanation
Indices: 98905569--98905600 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
98905559 AGGTCATTTA
98905569 GCCCAACCAAACTG
1 GCCCAACCAAACTG
98905583 GCCCAACCAAACTG
1 GCCCAACCAAACTG
98905597 GCCC
1 GCCC
98905601 TGTGATTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.31, C:0.47, G:0.16, T:0.06
Consensus pattern (14 bp):
GCCCAACCAAACTG
Found at i:98910119 original size:914 final size:914
Alignment explanation
Indices: 98908351--98910180 Score: 3615
Period size: 914 Copynumber: 2.0 Consensus size: 914
98908341 TTAAAAAATC
98908351 CAGAAATAGTTTTCAAGTATAGACACTAAAAACATCAAATCTTTGAGAGATTATATAGATGTATG
1 CAGAAATAGTTTTCAAGTATAGACACTAAAAACATCAAATCTTTGAGAGATTATATAGATGTATG
98908416 AGCTTTAAAGTACCTGAAATTTCAGCTGATGACTAAAAAGGGTGCTTTATTTTAATGAATTTAGT
66 AGCTTTAAAGTACCTGAAATTTCAGCTGATGACTAAAAAGGGTGCTTTATTTTAATGAATTTAGT
98908481 TAATGCGCGAGAAAATGGAAGGAAAGTTGAAGGAAAGTGTTTGTTTCAACATGTGGGGTATACTG
131 TAATGCGCGAGAAAATGGAAGGAAAGTTGAAGGAAAGTGTTTGTTTCAACATGTGGGGTATACTG
98908546 TTCAATGACCCTGACTTTGAGAGTGACCAGCTTGATGATGATCCACGGTTCAGAGGCGGCAGCAG
196 TTCAATGACCCTGACTTTGAGAGTGACCAGCTTGATGATGATCCACGGTTCAGAGGCGGCAGCAG
98908611 GGACTGGAGGGCCCGGCTCCGATGACATTTTAAATTTTTAGTCCACTAAAGATCTCCGCGGATCT
261 GGACTGGAGGGCCCGGCTCCGATGACATTTTAAATTTTTAGTCCACTAAAGATCTCCGCGGATCT
98908676 GGCAAAAGGCAACTTGTGTGGATATAAAATAAACTTGGTCCCAAAGGTAACTACAGTCTGTGGAA
326 GGCAAAAGGCAACTTGTGTGGATATAAAATAAACTTGGTCCCAAAGGTAACTACAGTCTGTGGAA
98908741 AATGACACAATCTAAACGTGTTACGGAAATCATTTGGACACCACTTTAGTCTCCCGTCCGGTCTT
391 AATGACACAATCTAAACGTGTTACGGAAATCATTTGGACACCACTTTAGTCTCCCGTCCGGTCTT
98908806 TCTGCTGTTTTGTTTCTACTTAGCAAAGGCCTACAGCTATACTGGTGAAGGTTTTTAAAACTGGA
456 TCTGCTGTTTTGTTTCTACTTAGCAAAGGCCTACAGCTATACTGGTGAAGGTTTTTAAAACTGGA
98908871 CAAATCAGTCATGTAATTTATTTGTAGGTTACACTAGTGATATTAATTGGTTTAGAAGTTATTAA
521 CAAATCAGTCATGTAATTTATTTGTAGGTTACACTAGTGATATTAATTGGTTTAGAAGTTATTAA
98908936 AAAAATTATAAAAATGAAAAAATATTAAAGATTTTGTTCAATCAATTTTTTGCTTTGTTCGTATC
586 AAAAATTATAAAAATGAAAAAATATTAAAGATTTTGTTCAATCAATTTTTTGCTTTGTTCGTATC
*
98909001 AGTTTTAGGATCAATAAGTTCAATGCCCTTCTTCAAATTAGTATCCTAACTAATTTTCGGTTCGA
651 AGTTTTAGGATCAATAAGTTCAATGCCCTTATTCAAATTAGTATCCTAACTAATTTTCGGTTCGA
98909066 CCGGTTGATCTTGTCTTATTCAAACAACATTGATTAAAATCACTCAAAATTGATCTTAGACCGGC
716 CCGGTTGATCTTGTCTTATTCAAACAACATTGATTAAAATCACTCAAAATTGATCTTAGACCGGC
98909131 GAAGCTATAGATTTTTGGAGTTGAGATTAAGTAATATGTTTTTATAAGAACTAAAATACAATTTC
781 GAAGCTATAGATTTTTGGAGTTGAGATTAAGTAATATGTTTTTATAAGAACTAAAATACAATTTC
*
98909196 AACATTGTATTGGCTTACATCTGCAGTTTTTAAAAGAATTAAATCAAAATTTATCATTTTTGGAG
846 AACATTGTATTGGCTTACATCTACAGTTTTTAAAAGAATTAAATCAAAATTTATCATTTTTGGAG
98909261 TGAT
911 TGAT
98909265 CAGAAATAGTTTTCAAGTATAGACACTAAAAACATCAAATCTTTGAGAGATTATATAGATGTATG
1 CAGAAATAGTTTTCAAGTATAGACACTAAAAACATCAAATCTTTGAGAGATTATATAGATGTATG
98909330 AGCTTTAAAGTACCTGAAATTTCAGCTGATGACTAAAAAGGGTGCTTTATTTTAATGAATTTAGT
66 AGCTTTAAAGTACCTGAAATTTCAGCTGATGACTAAAAAGGGTGCTTTATTTTAATGAATTTAGT
98909395 TAATGCGCGAGAAAATGGAAGGAAAGTTGAAGGAAAGTGTTTGTTTCAACATGTGGGGTATACTG
131 TAATGCGCGAGAAAATGGAAGGAAAGTTGAAGGAAAGTGTTTGTTTCAACATGTGGGGTATACTG
98909460 TTCAATGACCCTGACTTTGAGAGTGACCAGCTTGATGATGATCCACGGTTCAGAGGCGGCAGCAG
196 TTCAATGACCCTGACTTTGAGAGTGACCAGCTTGATGATGATCCACGGTTCAGAGGCGGCAGCAG
98909525 GGACTGGAGGGCCCGGCTCCGATGACATTTTAAATTTTTAGTCCACTAAAGATCTCCGCGGATCT
261 GGACTGGAGGGCCCGGCTCCGATGACATTTTAAATTTTTAGTCCACTAAAGATCTCCGCGGATCT
98909590 GGCAAAAGGCAACTTGTGTGGATATAAAATAAACTTGGTCCCAAAGGTAACTACAGTCTGTGGAA
326 GGCAAAAGGCAACTTGTGTGGATATAAAATAAACTTGGTCCCAAAGGTAACTACAGTCTGTGGAA
*
98909655 AATGACACAATCTAAACGTGTTACGTAAATCATTTGGACACCACTTTAGTCTCCCGTCCGGTCTT
391 AATGACACAATCTAAACGTGTTACGGAAATCATTTGGACACCACTTTAGTCTCCCGTCCGGTCTT
98909720 TCTGCTGTTTTGTTTCTACTTAGCAAAGGCCTACAGCTATACTGGTGAAGGTTTTTAAAACTGGA
456 TCTGCTGTTTTGTTTCTACTTAGCAAAGGCCTACAGCTATACTGGTGAAGGTTTTTAAAACTGGA
98909785 CAAATCAGTCATGTAATTTATTTGTAGGTTACACTAGTGATATTAATTGGTTTAGAAGTTATTAA
521 CAAATCAGTCATGTAATTTATTTGTAGGTTACACTAGTGATATTAATTGGTTTAGAAGTTATTAA
98909850 AAAAATTATAAAAATGAAAAAATATTAAAGATTTTGTTCAATCAATTTTTTGCTTTGTTCGTATC
586 AAAAATTATAAAAATGAAAAAATATTAAAGATTTTGTTCAATCAATTTTTTGCTTTGTTCGTATC
*
98909915 AGTTTTAGGATCAATAAGTTCAATGCCTTTATTCAAATTAGTATCCTAACTAATTTTCGGTTCGA
651 AGTTTTAGGATCAATAAGTTCAATGCCCTTATTCAAATTAGTATCCTAACTAATTTTCGGTTCGA
98909980 CCGGTTGATCTTGTCTTATTCAAACAACATTGATTAAAATCACTCAAAATTGATCTTAGACCGGC
716 CCGGTTGATCTTGTCTTATTCAAACAACATTGATTAAAATCACTCAAAATTGATCTTAGACCGGC
*
98910045 GAAGCTATAGATTTTTGGAGTTGAGATTAAGTAATATGTTTTTATAAGAGCTAAAATACAATTTC
781 GAAGCTATAGATTTTTGGAGTTGAGATTAAGTAATATGTTTTTATAAGAACTAAAATACAATTTC
98910110 AACATTGTATTGGCTTACATCTACAGTTTTTAAAAGAATTAAATCAAAATTTATCATTTTTGGAG
846 AACATTGTATTGGCTTACATCTACAGTTTTTAAAAGAATTAAATCAAAATTTATCATTTTTGGAG
98910175 TGAT
911 TGAT
98910179 CA
1 CA
98910181 AACTATAATT
Statistics
Matches: 911, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
914 911 1.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (914 bp):
CAGAAATAGTTTTCAAGTATAGACACTAAAAACATCAAATCTTTGAGAGATTATATAGATGTATG
AGCTTTAAAGTACCTGAAATTTCAGCTGATGACTAAAAAGGGTGCTTTATTTTAATGAATTTAGT
TAATGCGCGAGAAAATGGAAGGAAAGTTGAAGGAAAGTGTTTGTTTCAACATGTGGGGTATACTG
TTCAATGACCCTGACTTTGAGAGTGACCAGCTTGATGATGATCCACGGTTCAGAGGCGGCAGCAG
GGACTGGAGGGCCCGGCTCCGATGACATTTTAAATTTTTAGTCCACTAAAGATCTCCGCGGATCT
GGCAAAAGGCAACTTGTGTGGATATAAAATAAACTTGGTCCCAAAGGTAACTACAGTCTGTGGAA
AATGACACAATCTAAACGTGTTACGGAAATCATTTGGACACCACTTTAGTCTCCCGTCCGGTCTT
TCTGCTGTTTTGTTTCTACTTAGCAAAGGCCTACAGCTATACTGGTGAAGGTTTTTAAAACTGGA
CAAATCAGTCATGTAATTTATTTGTAGGTTACACTAGTGATATTAATTGGTTTAGAAGTTATTAA
AAAAATTATAAAAATGAAAAAATATTAAAGATTTTGTTCAATCAATTTTTTGCTTTGTTCGTATC
AGTTTTAGGATCAATAAGTTCAATGCCCTTATTCAAATTAGTATCCTAACTAATTTTCGGTTCGA
CCGGTTGATCTTGTCTTATTCAAACAACATTGATTAAAATCACTCAAAATTGATCTTAGACCGGC
GAAGCTATAGATTTTTGGAGTTGAGATTAAGTAATATGTTTTTATAAGAACTAAAATACAATTTC
AACATTGTATTGGCTTACATCTACAGTTTTTAAAAGAATTAAATCAAAATTTATCATTTTTGGAG
TGAT
Found at i:98910807 original size:26 final size:25
Alignment explanation
Indices: 98910777--98910842 Score: 64
Period size: 24 Copynumber: 2.6 Consensus size: 25
98910767 CAACAATATC
*
98910777 AATATTATATCATATAGGATCAAATG
1 AATATTATATCATATAGGAACAAA-G
* * *
98910803 TATA-TA-ATCACATAGGAACATAG
1 AATATTATATCATATAGGAACAAAG
98910826 AATCATTATATCATATA
1 AAT-ATTATATCATATA
98910843 TGAAATTACA
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
23 3 0.10
24 14 0.45
25 4 0.13
26 10 0.32
ACGTcount: A:0.47, C:0.11, G:0.09, T:0.33
Consensus pattern (25 bp):
AATATTATATCATATAGGAACAAAG
Found at i:98919854 original size:264 final size:264
Alignment explanation
Indices: 98918505--98920496 Score: 2753
Period size: 264 Copynumber: 7.6 Consensus size: 264
98918495 AAAAAAAAAA
* *
98918505 ACATATCCAATTTAAAGCATTTGTCAATGTAATAATATT-TTTTT-AAGGTAACAAAGAATTCCG
1 ACATATCCAATTTAAAGCATTTGTCAATGTAATAATATTATTTTTCAAGGTAACAAAGAGTTCCA
* * * *
98918568 ATTCATCGTCGAAAT-TAGTTCAAACAAAACCGGATTCGG-GGAATAGGGATAGCACTTTAAGAG
66 ATTCATCGCCGAAATCT-GTCCAAAGAAAACCGGATTTGGAGGAATAGGGATAGCACTTTAAGAG
* * *
98918631 GCTAAAGTACAACAACACCTACTAGGAAACAAGCATGGAGATGGGGGGCTAATGATTCAATCAAC
130 ACTAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGAT-TGGGGCTAATGATTCAATCAAC
* *
98918696 ACTAAGAACATAGCAGCATTGCATCACACACACATATATAAATAAGTGCATGCATTCTCACAGCT
194 ACTAAGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATGCATTCTCACAGCT
*
98918761 GAACGT
259 GAATGT
* * * * * * **
98918767 ACATATTCAATTGAAAACA--TGTCAATGTAATAATATTCTTTTTAAAGGTAACAAAGAGCTCTG
1 ACATATCCAATTTAAAGCATTTGTCAATGTAATAATATTATTTTTCAAGGTAACAAAGAGTTCCA
*** *
98918830 ATTCATCGCCGAAAT-TGGTCCAAAGAAAATAAGATTTAGG-GGAATAGGGATAGAACTTTAAGA
66 ATTCATCGCCGAAATCT-GTCCAAAGAAAACCGGATTT-GGAGGAATAGGGATAGCACTTTAAGA
* * * *
98918893 GACTAAAGCACAACAACACCTGCTAGGAAACAAGCATGGAGATCGGGGGCTAATGGTTCAACCAA
129 GACTAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGAT-TGGGGCTAATGATTCAATCAA
* * * * * *
98918958 CACTAAGAACATAACTGTATTGCATCACACTCACATATATAAATAAATGTGTGCATTCTCACAGT
193 CACTAAGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATGCATTCTCACAGC
*
98919023 TGAATCT
258 TGAATGT
*
98919030 ACATATCCAATTTAAAGCATTTGTCAATGTAATAA-AGTT-TTTTTCAAGGTAACAAAGAGTTTC
1 ACATATCCAATTTAAAGCATTTGTCAATGTAATAATA-TTATTTTTCAAGGTAACAAAGAGTTCC
* * * * * *
98919093 GATTCATCGCCGAAATCGGTCCAAA-AAAACCGAATTCGG-GGAATAGGGATAGCACTATAAGAA
65 AATTCATCGCCGAAATCTGTCCAAAGAAAACCGGATTTGGAGGAATAGGGATAGCACTTTAAGAG
* * ** **
98919156 ACTAAAGTACAGCAACACCTGCTAGGAAACAAGCGTGGAGACCGGGGCTAATGATTCAAAAAACA
130 ACTAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATTGGGGCTAATGATTCAATCAACA
*
98919221 CTAAGAACATAGCAGCATTGCAT--CACACACATATATAAATAAATGTATACATTCTCACAGCTG
195 CTAAGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATGCATTCTCACAGCTG
98919284 AATGT
260 AATGT
* *
98919289 ACATATCCAATTTAAAGCATTTGTCAATGTAATACTATTATTTTTCAAGATAACAAAGAGTTCCA
1 ACATATCCAATTTAAAGCATTTGTCAATGTAATAATATTATTTTTCAAGGTAACAAAGAGTTCCA
*
98919354 ATTCATCGCCCAAATCTGTCCAAAGAAAACCGGATTTGGAGGAATAGGGATAGCACTTTTAAGAG
66 ATTCATCGCCGAAATCTGTCCAAAGAAAACCGGATTTGGAGGAATAGGGATAGCAC-TTTAAGAG
* * *
98919419 ACTAAAGTACAAAAACACCTGCTAGAAAACAAGCATGGAGATTGGGGGCTAATGATCCAATCAAC
130 ACTAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATT-GGGGCTAATGATTCAATCAAC
* * * *
98919484 ACTAAGAACATAGTAGCAGTGCATCACACAGACATATAAAAATAAATGTATGCATTCTCACAGCT
194 ACTAAGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATGCATTCTCACAGCT
98919549 GAATGT
259 GAATGT
* * *
98919555 ACATATCCAATTTAAAGCATTTGTCAATGTAATAATATTGTCTTTCAAGGTAACAAAGATTTCCA
1 ACATATCCAATTTAAAGCATTTGTCAATGTAATAATATTATTTTTCAAGGTAACAAAGAGTTCCA
*
98919620 ATTCATCGCCCAAATCTGTCCAAAGAAAACCGGATTTGGAGGAATAGGGATAGCACTTTAAGAGA
66 ATTCATCGCCGAAATCTGTCCAAAGAAAACCGGATTTGGAGGAATAGGGATAGCACTTTAAGAGA
* * * *
98919685 CTAAAGTACAACACCACCTGCTAGGGAACAAGCATAGAGATTGGGGCTAATGATTCTATCAACAC
131 CTAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATTGGGGCTAATGATTCAATCAACAC
* * * * *
98919750 TAAGAACATAGCAGCAGTGCATCACACACACATAAATAAATAAATGTAAGCATTTTCACAGTTGA
196 TAAGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATGCATTCTCACAGCTGA
98919815 ATGT
261 ATGT
*
98919819 ACATATCCAATTTAAAGCATTTGCCAATGTAATAATATTATTTTTCAAGGTAACAAAGAGTTCCA
1 ACATATCCAATTTAAAGCATTTGTCAATGTAATAATATTATTTTTCAAGGTAACAAAGAGTTCCA
* * * * ** *
98919884 ATTTATTGCCGAAATCAGTCCAAAGGAAACCGGATACGGGGGAATAGGGATAGCACTTTAAGAGA
66 ATTCATCGCCGAAATCTGTCCAAAGAAAACCGGATTTGGAGGAATAGGGATAGCACTTTAAGAGA
* * *
98919949 CTAAAGTACAACAACACTTGCTAGGAAACAAGCATGGAGATCGGGGTTAATGATTCAATCAACAC
131 CTAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATTGGGGCTAATGATTCAATCAACAC
* * * *
98920014 TAAGAACATAGCAGCAATGCATCACACAGACAGACATAAATAAATGTATGCATTCTCACAGCTGA
196 TAAGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATGCATTCTCACAGCTGA
98920079 ATGT
261 ATGT
*
98920083 ACATATCCAATTTAAAGCATTTGTCAATGTAATAAT-TTTTTTTTCAAGGTAACAAAGAGTTCCA
1 ACATATCCAATTTAAAGCATTTGTCAATGTAATAATATTATTTTTCAAGGTAACAAAGAGTTCCA
* * * *
98920147 ATTCATTGCCCAAATCTGTCCAAAGAAAACCGGA-TTCGAGGAAATAGGGATAGTACTTTAAGAG
66 ATTCATCGCCGAAATCTGTCCAAAGAAAACCGGATTTGGAGG-AATAGGGATAGCACTTTAAGAG
98920211 ACTAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATTGGGGGCTAATGATTCAATCAAC
130 ACTAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATT-GGGGCTAATGATTCAATCAAC
* *
98920276 AGTAAGAACATAGCAACATTGCATCACGA-ACACATATATAAATAAATGTATGCATTCTCACAGC
194 ACTAAGAACATAGCAGCATTGCATCAC-ACACACATATATAAATAAATGTATGCATTCTCACAGC
98920340 TGAATGT
258 TGAATGT
* * * * *
98920347 ACATATCCGATTTCAAGCATTTAAT-AATGTAATAATATTATTTTTCAAGGCATCAAAGAGTTCC
1 ACATATCCAATTTAAAGCATTT-GTCAATGTAATAATATTATTTTTCAAGGTAACAAAGAGTTCC
* * * * * ** * *
98920411 GATTCATTGCTGAAATCGGTCCAAAGGAAACCGGA-TACGAGGGAGTAGGTATAGCACTTTAAGA
65 AATTCATCGCCGAAATCTGTCCAAAGAAAACCGGATTTGGA-GGAATAGGGATAGCACTTTAAGA
*
98920475 GACTAAAGTACAACAACTCCTG
129 GACTAAAGTACAACAACACCTG
98920497 TTTATGATCA
Statistics
Matches: 1541, Mismatches: 168, Indels: 39
0.88 0.10 0.02
Matches are distributed among these distances:
259 76 0.05
260 63 0.04
261 56 0.04
262 141 0.09
263 330 0.21
264 554 0.36
265 161 0.10
266 160 0.10
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.25
Consensus pattern (264 bp):
ACATATCCAATTTAAAGCATTTGTCAATGTAATAATATTATTTTTCAAGGTAACAAAGAGTTCCA
ATTCATCGCCGAAATCTGTCCAAAGAAAACCGGATTTGGAGGAATAGGGATAGCACTTTAAGAGA
CTAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATTGGGGCTAATGATTCAATCAACAC
TAAGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATGCATTCTCACAGCTGA
ATGT
Found at i:98923684 original size:4 final size:4
Alignment explanation
Indices: 98923661--98923694 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
98923651 GAAAAAAGGT
* *
98923661 AATA AACA AATA AATG AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AATA AA
98923695 AACAATTTGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (4 bp):
AATA
Found at i:98924849 original size:12 final size:13
Alignment explanation
Indices: 98924825--98924855 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
98924815 TTTTTCAAAG
98924825 CACTTCTCAAAAA
1 CACTTCTCAAAAA
98924838 CACTTCTCAAAAA
1 CACTTCTCAAAAA
98924851 CACTT
1 CACTT
98924856 TTCCACAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.42, C:0.32, G:0.00, T:0.26
Consensus pattern (13 bp):
CACTTCTCAAAAA
Found at i:98924878 original size:13 final size:13
Alignment explanation
Indices: 98924816--98924878 Score: 56
Period size: 13 Copynumber: 4.9 Consensus size: 13
98924806 CACTTAAATT
98924816 TTTTC-AAAGCAC
1 TTTTCAAAAGCAC
* *
98924828 TTCTCAAAAACAC
1 TTTTCAAAAGCAC
* *
98924841 TTCTCAAAAACAC
1 TTTTCAAAAGCAC
* *
98924854 TTTTCCACAGCAC
1 TTTTCAAAAGCAC
*
98924867 TTTTTAAAAGCA
1 TTTTCAAAAGCA
98924879 ATGAAGAACT
Statistics
Matches: 41, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
12 4 0.10
13 37 0.90
ACGTcount: A:0.38, C:0.27, G:0.05, T:0.30
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:98928785 original size:265 final size:263
Alignment explanation
Indices: 98928305--98929129 Score: 1262
Period size: 265 Copynumber: 3.1 Consensus size: 263
98928295 AAAAAAGCAG
*
98928305 CATATCCAATTTAAAGCATTTGTCAATGTAATAATAAATAATATTTTCTTTAAGGTAACAAAGAA
1 CATATCCAATTTAAAGCATTTGTCAATGTAATAAT--AT--TATTTTC---AAGGTAACAAAGAG
* * * *
98928370 TTCCAATTCATCGTCGAAATCGGTCCAAAGAAAACTGGATTCGGGGGAATAGGGATAGCACTTTA
59 TTCCGATTCATCGCCGAAATCAGTCCAAAGAAAACTGGATT-GGGCGAATAGGGATAGCACTTTA
* * *
98928435 AGAGACTAAAGTACAACAACACTTGCTAGGAAACAAGCATGGAGATGGGGGGCTAATGATTTAAT
123 AGAGACTAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATCGGGGGCTAATGATTCAAT
* *
98928500 CAACACTAAGAACATAGCAGCATTGCATCACACACACATATATAAAGAAATGTATGCATTCTTAC
188 CAACACTAAGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATGCATTCTCAC
98928565 AGCTGAACGTA
253 AGCTGAACGTA
* *
98928576 TATATCCAATTTAAAGCATTTGTCAATGTAATAATATTCCTTTTCAAGGTAACAAAGAGTTCCGA
1 CATATCCAATTTAAAGCATTTGTCAATGTAATAATATT-ATTTTCAAGGTAACAAAGAGTTCCGA
* * * * *
98928641 TTCATCGCCGAAATCAATCCAAAGAAAACAGGATTAGGGCGAATACGGATAGCATTTTAAGAAAC
65 TTCATCGCCGAAATCAGTCCAAAGAAAACTGGATT-GGGCGAATAGGGATAGCACTTTAAGAGAC
* *
98928706 TAAAGTACAATAACACCTGCTAGGAAACAAGCATGGAGATCGGGGGCAAATGATTCAATCAACAC
129 TAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATCGGGGGCTAATGATTCAATCAACAC
*
98928771 TAAGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATCCATTCTCACAGCTGA
194 TAAGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATGCATTCTCACAGCTGA
98928836 ATC-TA
259 A-CGTA
* * *
98928841 CATATCCAATTTAAAACATTTGTCAATGTAATATTATTTTTTTTCAAGGTAACAAAGAGTTCCGA
1 CATATCCAATTTAAAGCATTTGTCAATGTAATAATA-TTATTTTCAAGGTAACAAAGAGTTCCGA
* ** *
98928906 TTTATTACCGAAATCAGTCCAAAGAAAACTGGATTCGGCAGAATAGGGATAGCACTTTAAGAGAC
65 TTCATCGCCGAAATCAGTCCAAAGAAAACTGGATTGGGC-GAATAGGGATAGCACTTTAAGAGAC
98928971 TAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATC-GGGGCTAATGATTCAATCAACAC
129 TAAAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATCGGGGGCTAATGATTCAATCAACAC
98929035 TAAGAACATAGCAGCATTGCAT--CACACACATATATAAATAAATGTATGCATTCTCACAGCTGA
194 TAAGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATGCATTCTCACAGCTGA
98929098 ACGTA
259 ACGTA
98929103 CATATCCAATTTAAAGCATTTGTCAAT
1 CATATCCAATTTAAAGCATTTGTCAAT
98929130 ATAAATAAAT
Statistics
Matches: 511, Mismatches: 38, Indels: 19
0.90 0.07 0.03
Matches are distributed among these distances:
261 1 0.00
262 69 0.14
264 47 0.09
265 349 0.68
266 3 0.01
267 1 0.00
268 5 0.01
269 2 0.00
271 34 0.07
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.26
Consensus pattern (263 bp):
CATATCCAATTTAAAGCATTTGTCAATGTAATAATATTATTTTCAAGGTAACAAAGAGTTCCGAT
TCATCGCCGAAATCAGTCCAAAGAAAACTGGATTGGGCGAATAGGGATAGCACTTTAAGAGACTA
AAGTACAACAACACCTGCTAGGAAACAAGCATGGAGATCGGGGGCTAATGATTCAATCAACACTA
AGAACATAGCAGCATTGCATCACACACACATATATAAATAAATGTATGCATTCTCACAGCTGAAC
GTA
Found at i:98929137 original size:62 final size:62
Alignment explanation
Indices: 98929066--98929191 Score: 227
Period size: 62 Copynumber: 2.0 Consensus size: 62
98929056 TCACACACAT
*
98929066 ATATAAATAAATGTATGCATTCTCACAGCTGAA-CGTACATATCCAATTTAAAGCATTTGTCA
1 ATATAAATAAATGTATGCATTCTCACAGCTGAATC-TACATATCCAATTTAAAACATTTGTCA
98929128 ATATAAATAAATGTATGCATTCTCACAGCTGAATCTACATATCCAATTTAAAACATTTGTCA
1 ATATAAATAAATGTATGCATTCTCACAGCTGAATCTACATATCCAATTTAAAACATTTGTCA
98929190 AT
1 AT
98929192 GTAATATTAT
Statistics
Matches: 62, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
62 61 0.98
63 1 0.02
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (62 bp):
ATATAAATAAATGTATGCATTCTCACAGCTGAATCTACATATCCAATTTAAAACATTTGTCA
Found at i:98929958 original size:261 final size:263
Alignment explanation
Indices: 98929128--98930101 Score: 1567
Period size: 265 Copynumber: 3.7 Consensus size: 263
98929118 GCATTTGTCA
* *
98929128 ATATAAATAAATGTATGCATTCTCACAGCTGAATCTACATATCCAATTTAAAACATTTGTCAATG
1 ATATAAATAAATGTATGCATTCTCACAGCTGAATGTACATATCCAATTTAAAGCATTTGTCAATG
* * * *** *
98929193 TAATATTATTTTTTTTCAAGGTAACAAAGAGTTCCGATTTATTGACGAAATCAGTCCAAAGAAAA
66 TAATAATATTTATTTTCAAGGTAACAAAGAGTTCCGATTCATCCCCGAAATCGGTCCAAAGAAAA
* *
98929258 CCGAATTCGGGGGAATAGGGATAGCACTTTAAGAGACTAAAGTACAACAACACCTGCTAGGAAAC
131 CCGGATTCAGGGGAATAGGGATAGCACTTTAAGAGACTAAAGTACAACAACACCTGCTAGGAAAC
* *
98929323 AAGCATGGAGATCGGGGGCTAATGATTCAATCAACACTACGAACATAGCAGCATTGCATCACACA
196 AAGCATGGAGATCAGGGGCTAATGATTCAATCAACACTAAGAACATAGCAGCATTGCAT--CACA
98929388 CACAT
259 CACAT
*
98929393 ATATAAATAAATGTATGCATTCTCACAGCTGAACGTACATATCCAATTTAAAGCATTTGTCAATG
1 ATATAAATAAATGTATGCATTCTCACAGCTGAATGTACATATCCAATTTAAAGCATTTGTCAATG
* * **
98929458 TAATAATATTTATTTTCAAGGTAACAAAGAGTTCTGATTCATCCCCAAAATCGGTCTGAAGAAAA
66 TAATAATATTTATTTTCAAGGTAACAAAGAGTTCCGATTCATCCCCGAAATCGGTCCAAAGAAAA
* * * *
98929523 CCGGATTAAGGGGAACAGGGATAGCGCTTTAAGAGATTAAAGTACAACAACACCTGCTAGGAAAC
131 CCGGATTCAGGGGAATAGGGATAGCACTTTAAGAGACTAAAGTACAACAACACCTGCTAGGAAAC
*
98929588 AAGCATGGAGATCAGAGGCTAATGATTCAATCAACACTAAGAACATAGCAGCATTGCATCACACA
196 AAGCATGGAGATCAGGGGCTAATGATTCAATCAACACTAAGAACATAGCAGCATTGCATCACACA
*
98929653 CAC
261 CAT
*
98929656 ATATAAATAAATGTATGCATTCTCACAGCTGAATGTACATATCCATTTTAAAGCATTTGTCAATG
1 ATATAAATAAATGTATGCATTCTCACAGCTGAATGTACATATCCAATTTAAAGCATTTGTCAATG
* * *
98929721 TAATAATATTTATTTTTAAGGTAACAAAGAGTTCTGATTCATCCCCGAAATCGGTCCAAAAAAAA
66 TAATAATATTTATTTTCAAGGTAACAAAGAGTTCCGATTCATCCCCGAAATCGGTCCAAAGAAAA
* * *
98929786 CCGGATT-AGGGGAATAGGGATAGCACTTCAAGAGACTAAAGTCCAACATCA-CTGCTAGGAAAC
131 CCGGATTCAGGGGAATAGGGATAGCACTTTAAGAGACTAAAGTACAACAACACCTGCTAGGAAAC
98929849 AAGCATGGAGATCAGGGGCTAATGATTCAATCAACACTAAGAACATAGCAGCATTGCATCACACA
196 AAGCATGGAGATCAGGGGCTAATGATTCAATCAACACTAAGAACATAGCAGCATTGCATCACACA
98929914 CAT
261 CAT
* * *
98929917 ATAGAAATAAATGTATGCATTCTCACAGCTGAATATACATATCCAATTTAAAGCA-TTGTCAATA
1 ATATAAATAAATGTATGCATTCTCACAGCTGAATGTACATATCCAATTTAAAGCATTTGTCAATG
* *
98929981 TAATAATATTTATTTTCAAGGTAACAAAGAGTTCCAATTCATCGCCGAAATCGGTCCAAAGAAAA
66 TAATAATATTTATTTTCAAGGTAACAAAGAGTTCCGATTCATCCCCGAAATCGGTCCAAAGAAAA
* *
98930046 CCGGATTCGGGGGAATAGGGATAGCACTTTAAGAGACTAAAGTACAATAACACCTG
131 CCGGATTCAGGGGAATAGGGATAGCACTTTAAGAGACTAAAGTACAACAACACCTG
98930102 TTTAGCATTA
Statistics
Matches: 654, Mismatches: 53, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
260 75 0.11
261 169 0.26
262 41 0.06
263 138 0.21
265 231 0.35
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.25
Consensus pattern (263 bp):
ATATAAATAAATGTATGCATTCTCACAGCTGAATGTACATATCCAATTTAAAGCATTTGTCAATG
TAATAATATTTATTTTCAAGGTAACAAAGAGTTCCGATTCATCCCCGAAATCGGTCCAAAGAAAA
CCGGATTCAGGGGAATAGGGATAGCACTTTAAGAGACTAAAGTACAACAACACCTGCTAGGAAAC
AAGCATGGAGATCAGGGGCTAATGATTCAATCAACACTAAGAACATAGCAGCATTGCATCACACA
CAT
Found at i:98933353 original size:21 final size:21
Alignment explanation
Indices: 98933327--98933367 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
98933317 ATCTGCTCAA
* *
98933327 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
98933348 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
98933368 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:98936907 original size:18 final size:18
Alignment explanation
Indices: 98936868--98936907 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
98936858 TGAGTTTTTT
* *
98936868 AAAAATATTTTTTGAATA
1 AAAAATATTTTTTAAACA
98936886 AAAAATATTTTTTAAACCA
1 AAAAATATTTTTTAAA-CA
98936905 AAA
1 AAA
98936908 GTAAAAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.38
Consensus pattern (18 bp):
AAAAATATTTTTTAAACA
Found at i:98942767 original size:30 final size:30
Alignment explanation
Indices: 98942733--98942792 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
98942723 ACTTAACAAG
*
98942733 CAAATACCTTTAAAATAATAATAAAATTAA
1 CAAATACCTTTAAAATAATAACAAAATTAA
*
98942763 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATACCTTTAAAATAATAACAAAATTAA
98942793 TAATAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.58, C:0.12, G:0.02, T:0.28
Consensus pattern (30 bp):
CAAATACCTTTAAAATAATAACAAAATTAA
Found at i:98944566 original size:40 final size:40
Alignment explanation
Indices: 98944511--98944589 Score: 140
Period size: 40 Copynumber: 2.0 Consensus size: 40
98944501 TACATCAAAT
*
98944511 TATACGAGTCATGTATATATAGCCTGTTATCCACTTAGGA
1 TATACGAGTCATGTATATATAGCATGTTATCCACTTAGGA
*
98944551 TATACGAGTCATGTATATATAGCATGTTTTCCACTTAGG
1 TATACGAGTCATGTATATATAGCATGTTATCCACTTAGG
98944590 CTTTAGATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (40 bp):
TATACGAGTCATGTATATATAGCATGTTATCCACTTAGGA
Found at i:98944876 original size:17 final size:17
Alignment explanation
Indices: 98944828--98944879 Score: 77
Period size: 17 Copynumber: 3.1 Consensus size: 17
98944818 AAGAACATGT
*
98944828 TTAGATTCGTCTACAAA
1 TTAGATTCGTCTACTAA
*
98944845 TTAGATTCGTCTACTAG
1 TTAGATTCGTCTACTAA
*
98944862 TTAGATTCGTTTACTAA
1 TTAGATTCGTCTACTAA
98944879 T
1 T
98944880 ACAAGCTATC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.29, C:0.15, G:0.13, T:0.42
Consensus pattern (17 bp):
TTAGATTCGTCTACTAA
Found at i:98947463 original size:3 final size:3
Alignment explanation
Indices: 98947457--98947920 Score: 59
Period size: 3 Copynumber: 151.3 Consensus size: 3
98947447 TTTCATCATC
* * * * * *
98947457 ATT ATT ATT ATT ATC CTC ATT AGT A-T ATT ATT ATT ATT TTT ACT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
** ** * ** *
98947504 ATT ATT ATT -TT CACC ATT GCT ATT ATGT TTT AAC ATT ATT ATT TTCT
1 ATT ATT ATT ATT -ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT AT-T
* * * *
98947551 ATT ATT ATCA ATGT -TT A-T ATT ATT ATT ATTT ATT ATC AAT ATT AAT
1 ATT ATT AT-T AT-T ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT
* *** * * * * *
98947597 ATT ATC ATT GCC GTT TTT ATT ACT ATC ATT ATT ATT ATTT ACT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT
* * * ** * * *
98947643 GTTT ATT ATC ATT ATT ATC ACC ATT CCTT ACT ATT -TGCT ATT ATT AGT
1 -ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT AT--T ATT ATT ATT
* * * * * * *
98947691 ATT ACT AGTT -TC ATT ATT GTT ATC ACT ATT TTT ATT ACT ACTT A-T
1 ATT ATT A-TT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT
* * * * * * *
98947736 ATT ATT ACTC CTT -TT ATT ATT AAT ATCC ATT ATC AAT ATT ATT GTT
1 ATT ATT A-TT ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT
* * * * *
98947782 ACT ATT ATT ATT ATT ATT GTT ATT -TCT CATG AAT A-T ATT GTT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT-T -ATT ATT ATT ATT ATT ATT
* * * * * * *
98947827 -TAT ATT ATT ATC ATT ATT ACT ACT AGT ATT ATTT CTT ATA ACT ATT
1 AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT
* * * ** *
98947873 ATGCT GTT ACT GTT ACC ATT ACT ATT ATT ATT ATT ATT ATT ATT ATT
1 AT--T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
98947920 A
1 A
98947921 ACATTCTTTA
Statistics
Matches: 308, Mismatches: 122, Indels: 62
0.63 0.25 0.13
Matches are distributed among these distances:
2 17 0.06
3 261 0.85
4 26 0.08
5 4 0.01
ACGTcount: A:0.29, C:0.11, G:0.04, T:0.56
Consensus pattern (3 bp):
ATT
Found at i:98947505 original size:18 final size:18
Alignment explanation
Indices: 98947482--98947581 Score: 77
Period size: 18 Copynumber: 5.8 Consensus size: 18
98947472 CTCATTAGTA
98947482 TATTATTATTATTTTTAC
1 TATTATTATTATTTTTAC
*
98947500 TATTATTATTATTTTCAC
1 TATTATTATTATTTTTAC
* **
98947518 CATTGCTATTATGTTTTA-
1 TATTATTATTAT-TTTTAC
*
98947536 -A-CATTATTA-TTTT-C
1 TATTATTATTATTTTTAC
* *
98947550 TATTATTATCAATGTTTA-
1 TATTATTAT-TATTTTTAC
98947568 TATTATTATTATTT
1 TATTATTATTATTT
98947582 ATTATCAATA
Statistics
Matches: 62, Mismatches: 13, Indels: 15
0.69 0.14 0.17
Matches are distributed among these distances:
14 4 0.06
15 1 0.02
16 10 0.16
17 5 0.08
18 38 0.61
19 4 0.06
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.61
Consensus pattern (18 bp):
TATTATTATTATTTTTAC
Found at i:98950381 original size:54 final size:54
Alignment explanation
Indices: 98950308--98950414 Score: 187
Period size: 54 Copynumber: 2.0 Consensus size: 54
98950298 CCCTACTCAC
* *
98950308 AGTTGTGTACATATGGATAAATTTTGGTAAAATATTAAACTTATATTTCAAGTT
1 AGTTGTGTACATATCGATAAATTTTGATAAAATATTAAACTTATATTTCAAGTT
*
98950362 AGTTGTGTATATATCGATAAATTTTGATAAAATATTAAACTTATATTTCAAGT
1 AGTTGTGTACATATCGATAAATTTTGATAAAATATTAAACTTATATTTCAAGT
98950415 CGAGACATAT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.38, C:0.06, G:0.13, T:0.43
Consensus pattern (54 bp):
AGTTGTGTACATATCGATAAATTTTGATAAAATATTAAACTTATATTTCAAGTT
Found at i:98953064 original size:24 final size:27
Alignment explanation
Indices: 98953036--98953103 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 27
98953026 ATTTATTTAT
98953036 TTATTTATTTTTTTAA-CTT-TTGTCC
1 TTATTTATTTTTTTAAGCTTATTGTCC
*
98953061 -TATTCT-TTTTTTTAAGTTTTATTGTCC
1 TTATT-TATTTTTTTAAG-CTTATTGTCC
98953088 TTATTTATTTATTTTA
1 TTATTTATTT-TTTTA
98953104 TTTATTATTA
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
24 13 0.37
25 1 0.03
26 2 0.06
27 7 0.20
28 7 0.20
29 5 0.14
ACGTcount: A:0.18, C:0.09, G:0.04, T:0.69
Consensus pattern (27 bp):
TTATTTATTTTTTTAAGCTTATTGTCC
Found at i:98953141 original size:22 final size:23
Alignment explanation
Indices: 98953116--98953163 Score: 62
Period size: 22 Copynumber: 2.1 Consensus size: 23
98953106 TATTATTAAT
*
98953116 TTTAAAATACTTTA-AATTTATA
1 TTTAAAATACTTTATAATATATA
**
98953138 TTTAAAATGTTTTATAATATATA
1 TTTAAAATACTTTATAATATATA
98953161 TTT
1 TTT
98953164 TTTAAAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (23 bp):
TTTAAAATACTTTATAATATATA
Found at i:98953198 original size:25 final size:23
Alignment explanation
Indices: 98953120--98953199 Score: 67
Period size: 23 Copynumber: 3.4 Consensus size: 23
98953110 ATTAATTTTA
*
98953120 AAATACTTTAAAT-T-TATATTT
1 AAATATTTTAAATATATATATTT
* *
98953141 AAAATGTTTTATAATATATATTTTTT
1 -AAATATTTTA-AATATATA-TATTT
98953167 AAA-ATTTTAAATATATATATTT
1 AAATATTTTAAATATATATATTT
98953189 GAAATTATTTT
1 -AAA-TATTTT
98953200 TTAAAATTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
22 12 0.26
23 14 0.30
24 6 0.13
25 10 0.22
26 4 0.09
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (23 bp):
AAATATTTTAAATATATATATTT
Found at i:98953213 original size:20 final size:20
Alignment explanation
Indices: 98953185--98953245 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
98953175 AAATATATAT
*
98953185 ATTTGAAATTATTTTTTAAA
1 ATTTTAAATTATTTTTTAAA
98953205 ATTTTAAATATTATTTTTT-AA
1 ATTTT-AA-ATTATTTTTTAAA
* *
98953226 ATATTAAATATATTTGTTAA
1 ATTTTAAAT-TATTTTTTAA
98953246 TAATATAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
19 2 0.06
20 13 0.38
21 9 0.26
22 10 0.29
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (20 bp):
ATTTTAAATTATTTTTTAAA
Found at i:98953220 original size:22 final size:22
Alignment explanation
Indices: 98953192--98953259 Score: 86
Period size: 22 Copynumber: 3.1 Consensus size: 22
98953182 TATATTTGAA
*
98953192 ATTATTTTTTAAAATTTTAAAT
1 ATTATTTTTTAAAATATTAAAT
98953214 ATTATTTTTT-AAATATTAAAT
1 ATTATTTTTTAAAATATTAAAT
* *
98953235 A-TATTTGTTAATAATATAAAAT
1 ATTATTTTTTAA-AATATTAAAT
98953257 ATT
1 ATT
98953260 TAAATATCTT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
20 7 0.17
21 12 0.30
22 20 0.50
23 1 0.03
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.54
Consensus pattern (22 bp):
ATTATTTTTTAAAATATTAAAT
Found at i:98953364 original size:21 final size:21
Alignment explanation
Indices: 98953330--98953369 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
98953320 ACATTTTAAA
98953330 TTTTAAATATTTTTAAATTTG
1 TTTTAAATATTTTTAAATTTG
98953351 TTTTATAATA-TTTTAAATT
1 TTTTA-AATATTTTTAAATT
98953370 ATGATTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (21 bp):
TTTTAAATATTTTTAAATTTG
Found at i:98953462 original size:21 final size:22
Alignment explanation
Indices: 98953438--98953479 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
98953428 TTATTTGATT
98953438 TATAATATTT-TAAATT-TTAAA
1 TATAAT-TTTATAAATTATTAAA
98953459 TATAATTTTATAAATTATTAA
1 TATAATTTTATAAATTATTAA
98953480 TTTTAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 3 0.16
21 12 0.63
22 4 0.21
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (22 bp):
TATAATTTTATAAATTATTAAA
Found at i:98953467 original size:12 final size:13
Alignment explanation
Indices: 98953450--98953498 Score: 57
Period size: 12 Copynumber: 3.7 Consensus size: 13
98953440 TAATATTTTA
98953450 AATTTTAAATA-T
1 AATTTTAAATATT
98953462 AATTTTATAAATTATT
1 AA-TTT-TAAA-TATT
98953478 AATTTTAAA-ATT
1 AATTTTAAATATT
98953490 AATTTTAAA
1 AATTTTAAA
98953499 GATATTCAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
12 14 0.42
13 3 0.09
14 8 0.24
15 5 0.15
16 3 0.09
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (13 bp):
AATTTTAAATATT
Found at i:98953469 original size:29 final size:28
Alignment explanation
Indices: 98953436--98953496 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 28
98953426 TATTATTTGA
98953436 TTTATAATATT-TTAAATTTT-AAATATAAT
1 TTTATAA-ATTATT-AATTTTAAAAT-TAAT
98953465 TTTATAAATTATTAATTTTAAAATTAAT
1 TTTATAAATTATTAATTTTAAAATTAAT
98953493 TTTA
1 TTTA
98953497 AAGATATTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
28 17 0.57
29 13 0.43
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (28 bp):
TTTATAAATTATTAATTTTAAAATTAAT
Found at i:98953670 original size:20 final size:18
Alignment explanation
Indices: 98953643--98953693 Score: 57
Period size: 19 Copynumber: 2.7 Consensus size: 18
98953633 TTTGAATTTA
* *
98953643 ATTTAAAAAATGTTTCAT
1 ATTTAAAAAATATTTAAT
98953661 ATTATTAAAAATATATTTAAT
1 A-T-TTAAAAA-ATATTTAAT
98953682 ATTTAAAAAATA
1 ATTTAAAAAATA
98953694 ATATTTAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
18 4 0.14
19 8 0.29
20 8 0.29
21 8 0.29
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTTAAAAAATATTTAAT
Found at i:98953683 original size:21 final size:21
Alignment explanation
Indices: 98953645--98953738 Score: 68
Period size: 21 Copynumber: 4.4 Consensus size: 21
98953635 TGAATTTAAT
* *
98953645 TTAAAAA-ATGTTTCATATTA
1 TTAAAAATATATTTAATATTA
98953665 TTAAAAATATATTTAATATT-
1 TTAAAAATATATTTAATATTA
* * *
98953685 TAAAAAATAATATTTAAAATTTT
1 TTAAAAAT-ATATTTAATA-TTA
98953708 TTAAAAATA-ATTTTAAATATATA
1 TTAAAAATATA-TTT-AATAT-TA
*
98953731 TTTAAAAT
1 TTAAAAAT
98953739 TTTTAAAAAT
Statistics
Matches: 59, Mismatches: 8, Indels: 11
0.76 0.10 0.14
Matches are distributed among these distances:
20 14 0.24
21 20 0.34
22 7 0.12
23 18 0.31
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (21 bp):
TTAAAAATATATTTAATATTA
Found at i:98953713 original size:23 final size:23
Alignment explanation
Indices: 98953659--98953737 Score: 85
Period size: 23 Copynumber: 3.5 Consensus size: 23
98953649 AAAATGTTTC
98953659 ATATTATTAAAAAT-ATATTT--A
1 ATATT-TTAAAAATAATATTTAAA
*
98953680 ATATTTAAAAAATAATATTTAAA
1 ATATTTTAAAAATAATATTTAAA
*
98953703 ATTTTTTAAAAATAAT-TTTAAA
1 ATATTTTAAAAATAATATTTAAA
98953725 TATATATTTAAAA
1 -ATAT-TTTAAAA
98953738 TTTTTAAAAA
Statistics
Matches: 49, Mismatches: 4, Indels: 7
0.82 0.07 0.12
Matches are distributed among these distances:
20 7 0.14
21 11 0.22
22 6 0.12
23 18 0.37
24 7 0.14
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (23 bp):
ATATTTTAAAAATAATATTTAAA
Found at i:98953738 original size:23 final size:22
Alignment explanation
Indices: 98953711--98953792 Score: 76
Period size: 23 Copynumber: 3.6 Consensus size: 22
98953701 AAATTTTTTA
98953711 AAAATAATTTTAAATATATATTT
1 AAAAT-ATTTTAAATATATATTT
98953734 AAAAT-TTTTAAAAATATATATTAT
1 AAAATATTTT--AAATATATATT-T
* * *
98953758 AAAACATTTCAAATATACATTT
1 AAAATATTTTAAATATATATTT
* *
98953780 CAAGTATTTTAAA
1 AAAATATTTTAAA
98953793 ATTAATAATA
Statistics
Matches: 48, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
21 4 0.08
22 10 0.21
23 26 0.54
24 5 0.10
25 3 0.06
ACGTcount: A:0.51, C:0.05, G:0.01, T:0.43
Consensus pattern (22 bp):
AAAATATTTTAAATATATATTT
Found at i:98953810 original size:16 final size:17
Alignment explanation
Indices: 98953789--98953821 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
98953779 TCAAGTATTT
*
98953789 TAAAATTAAT-AATAAA
1 TAAAATAAATAAATAAA
98953805 TAAAATAAATAAATAAA
1 TAAAATAAATAAATAAA
98953822 GACAAAGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (17 bp):
TAAAATAAATAAATAAA
Found at i:98953898 original size:20 final size:19
Alignment explanation
Indices: 98953858--98953899 Score: 57
Period size: 21 Copynumber: 2.1 Consensus size: 19
98953848 AGATTAGGAC
98953858 AAAAATTAAAAAAAGTAAAA
1 AAAAATTAAAAAAAG-AAAA
98953878 AAAAATTAAAAGAAAAGAAAA
1 AAAAATT-AAA-AAAAGAAAA
98953899 A
1 A
98953900 GTAGGCTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 7 0.35
21 8 0.40
22 5 0.25
ACGTcount: A:0.81, C:0.00, G:0.07, T:0.12
Consensus pattern (19 bp):
AAAAATTAAAAAAAGAAAA
Found at i:98962701 original size:11 final size:11
Alignment explanation
Indices: 98962685--98962709 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
98962675 GAGTTGGGTT
98962685 ATTATATAACA
1 ATTATATAACA
98962696 ATTATATAACA
1 ATTATATAACA
98962707 ATT
1 ATT
98962710 TGTCCCTCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (11 bp):
ATTATATAACA
Found at i:98965637 original size:20 final size:19
Alignment explanation
Indices: 98965594--98965630 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
98965584 CATTAGACTC
*
98965594 AAAAAATTAATTTCAAAGT
1 AAAAAATTAATATCAAAGT
*
98965613 AAAAAATTAGTATCAAAG
1 AAAAAATTAATATCAAAG
98965631 GTTAAAAGTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.59, C:0.05, G:0.08, T:0.27
Consensus pattern (19 bp):
AAAAAATTAATATCAAAGT
Found at i:98971262 original size:24 final size:26
Alignment explanation
Indices: 98971208--98971268 Score: 67
Period size: 24 Copynumber: 2.5 Consensus size: 26
98971198 TTATTCTTTC
*
98971208 ATTAAAAAATAATTAATCTTTATACG
1 ATTAAAAAATAATCAATCTTTATACG
*
98971234 A--AAAAAATTATCAAT-TTT-TACG
1 ATTAAAAAATAATCAATCTTTATACG
*
98971256 ATTAAAAACTAAT
1 ATTAAAAAATAAT
98971269 TTATGTACAT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
22 5 0.17
23 3 0.10
24 20 0.69
26 1 0.03
ACGTcount: A:0.52, C:0.08, G:0.03, T:0.36
Consensus pattern (26 bp):
ATTAAAAAATAATCAATCTTTATACG
Found at i:98983948 original size:8 final size:8
Alignment explanation
Indices: 98983935--98983963 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
98983925 TACATGATAT
98983935 AAAATTCG
1 AAAATTCG
98983943 AAAATTCG
1 AAAATTCG
98983951 AAAATTCG
1 AAAATTCG
98983959 AAAAT
1 AAAAT
98983964 AAAAACTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.55, C:0.10, G:0.10, T:0.24
Consensus pattern (8 bp):
AAAATTCG
Found at i:98988467 original size:19 final size:18
Alignment explanation
Indices: 98988428--98988475 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
98988418 TTCAATTAAT
*
98988428 TTTAAAATTTATAAATTA
1 TTTAAAATTTATAAATAA
98988446 TTTAAAATCTTA-ATAATAA
1 TTTAAAAT-TTATA-AATAA
98988465 TTTAGAAATTT
1 TTTA-AAATTT
98988476 TTTGGTGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
18 9 0.35
19 13 0.50
20 4 0.15
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (18 bp):
TTTAAAATTTATAAATAA
Found at i:98995395 original size:20 final size:21
Alignment explanation
Indices: 98995362--98995409 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
98995352 AAGTATAGAT
98995362 ATATATACACATA-TAATAAA
1 ATATATACACATATTAATAAA
98995382 ATATATACTA-ATATTAATAATA
1 ATATATAC-ACATATTAATAA-A
98995404 A-ATATA
1 ATATATA
98995410 ATAGGGGTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 11 0.44
21 12 0.48
22 2 0.08
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (21 bp):
ATATATACACATATTAATAAA
Found at i:98995489 original size:23 final size:22
Alignment explanation
Indices: 98995456--98995500 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
98995446 AAATACGGTA
* *
98995456 TTAAAATATATATAATATAGTAT
1 TTAAAAAATATAT-ACATAGTAT
98995479 TTAAAAAATATATACATAGTAT
1 TTAAAAAATATATACATAGTAT
98995501 ATATACTAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.40
Consensus pattern (22 bp):
TTAAAAAATATATACATAGTAT
Found at i:98995731 original size:24 final size:23
Alignment explanation
Indices: 98995704--98995760 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
98995694 TATATGTACG
98995704 TAATATATA-TAAAAAATGTATACA
1 TAATATATATTAAAAAAT-T-TACA
*
98995728 TAATATAGTATTAAAATATTTACA
1 TAATATA-TATTAAAAAATTTACA
*
98995752 TAGTATATA
1 TAATATATA
98995761 CATATTAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
23 2 0.07
24 17 0.59
25 3 0.10
26 7 0.24
ACGTcount: A:0.53, C:0.04, G:0.05, T:0.39
Consensus pattern (23 bp):
TAATATATATTAAAAAATTTACA
Found at i:98995976 original size:48 final size:48
Alignment explanation
Indices: 98995887--98995978 Score: 116
Period size: 48 Copynumber: 1.9 Consensus size: 48
98995877 AATAATAAGG
98995887 ATAATATAAAAATATACACATGAAATAGTATAAAAAAACATATAACTA
1 ATAATATAAAAATATACACATGAAATAGTATAAAAAAACATATAACTA
* * * *
98995935 ATAATACTAAAGATATATACAT-ATATA-TATATATAAAACATATA
1 ATAATA-TAAAAATATACACATGAAATAGTATA-AAAAAACATATA
98995979 CGATACACAT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
47 4 0.11
48 21 0.55
49 13 0.34
ACGTcount: A:0.60, C:0.08, G:0.03, T:0.29
Consensus pattern (48 bp):
ATAATATAAAAATATACACATGAAATAGTATAAAAAAACATATAACTA
Found at i:98996069 original size:25 final size:23
Alignment explanation
Indices: 98996027--98996086 Score: 79
Period size: 23 Copynumber: 2.6 Consensus size: 23
98996017 AAACAACTAT
*
98996027 TAATAATATTACATAAATATATACA
1 TAATAATATTA-A-AAATAAATACA
98996052 T-AT-ATATTAAAAATAAATACA
1 TAATAATATTAAAAATAAATACA
98996073 TAATAATATTAAAA
1 TAATAATATTAAAA
98996087 GTATGTTCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
21 11 0.34
22 3 0.09
23 15 0.47
24 2 0.06
25 1 0.03
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (23 bp):
TAATAATATTAAAAATAAATACA
Found at i:98996267 original size:19 final size:19
Alignment explanation
Indices: 98996245--98996284 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
98996235 ATACTAATGC
98996245 TAATAAATAAT-AAATATAA
1 TAAT-AATAATAAAATATAA
*
98996264 TAATAGTAATAAAATATAA
1 TAATAATAATAAAATATAA
98996283 TA
1 TA
98996285 GTATACATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (19 bp):
TAATAATAATAAAATATAA
Found at i:98996282 original size:25 final size:28
Alignment explanation
Indices: 98996245--98996296 Score: 67
Period size: 25 Copynumber: 2.0 Consensus size: 28
98996235 ATACTAATGC
98996245 TAATAAATAATAA-A-TATA-ATAATAG
1 TAATAAATAATAATAGTATACATAATAG
98996270 TAATAAA-ATATAATAGTATACATAATA
1 TAATAAATA-ATAATAGTATACATAATA
98996297 TTAAAATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
24 1 0.04
25 11 0.48
26 1 0.04
27 4 0.17
28 6 0.26
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.33
Consensus pattern (28 bp):
TAATAAATAATAATAGTATACATAATAG
Found at i:98998925 original size:54 final size:55
Alignment explanation
Indices: 98998821--98998931 Score: 188
Period size: 56 Copynumber: 2.0 Consensus size: 55
98998811 GGTATATATA
98998821 TGTATGCATGCATGCATTTATGTGTGTGTGCCCAATGGTCAACTTTTATCGATCTT
1 TGTATGCATGCATGCATTTATGTGTGTGT-CCCAATGGTCAACTTTTATCGATCTT
* *
98998877 TGTATGCATGCATGTATTTATGTGTGTGT-CCAATGGTCAATTTTTATCGATCTT
1 TGTATGCATGCATGCATTTATGTGTGTGTCCCAATGGTCAACTTTTATCGATCTT
98998931 T
1 T
98998932 AGTTCACTAT
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
54 25 0.47
56 28 0.53
ACGTcount: A:0.20, C:0.15, G:0.21, T:0.44
Consensus pattern (55 bp):
TGTATGCATGCATGCATTTATGTGTGTGTCCCAATGGTCAACTTTTATCGATCTT
Found at i:98999282 original size:31 final size:31
Alignment explanation
Indices: 98999244--98999305 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
98999234 AGATAGTAAG
98999244 TACATGAATCGGCATGAATGTAACCAAACTC
1 TACATGAATCGGCATGAATGTAACCAAACTC
98999275 TACATGAATCGGCATGAATGTAACCAAACTC
1 TACATGAATCGGCATGAATGTAACCAAACTC
98999306 AGGCAACCCG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.23, G:0.16, T:0.23
Consensus pattern (31 bp):
TACATGAATCGGCATGAATGTAACCAAACTC
Found at i:99004339 original size:29 final size:30
Alignment explanation
Indices: 99004280--99004337 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
99004270 TCCGAGCCTT
*
99004280 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
99004310 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
99004338 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:99004566 original size:13 final size:13
Alignment explanation
Indices: 99004548--99004579 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
99004538 TTTCCAGCAA
99004548 TTATGAATTTATT
1 TTATGAATTTATT
99004561 TTATGAATTTATT
1 TTATGAATTTATT
*
99004574 TGATGA
1 TTATGA
99004580 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:99004749 original size:50 final size:50
Alignment explanation
Indices: 99004674--99004866 Score: 280
Period size: 50 Copynumber: 3.8 Consensus size: 50
99004664 ATTTGGGTAA
99004674 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
*
99004724 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * * *
99004774 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA-GATG
** *
99004824 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
99004867 TGTTATTATC
Statistics
Matches: 128, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
49 1 0.01
50 93 0.73
51 34 0.27
ACGTcount: A:0.26, C:0.24, G:0.30, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:99010556 original size:156 final size:150
Alignment explanation
Indices: 99010269--99010574 Score: 400
Period size: 156 Copynumber: 2.0 Consensus size: 150
99010259 CACCGGCACT
* ** *
99010269 GGCACCGGCTCCACCTCCGGCTAGCTTAAATGGAAGTTGTAGCACTAGTGTCAGCTTGATTAGCA
1 GGCACCAGCTCCACCTCCGGCTAGCTTAAATGGAAGTTGTAGCACTAGCATCAGCCTGATTAGCA
* * *
99010334 GTGGTTGTAGCAGCAGCAGCGGTGTATTTTCGAGCTTATTTACCTCCTCGACTGTATCTGCAAGC
66 GTGGTTGTAGCAGCAGCAGCGGTGTATTTGCAAGCTTATTTACCTCCTCAACTGTATCTGCAAGC
* *
99010399 ATTCGACCTCCTCAACCTCC
131 ATACAACCTCCTCAACCTCC
* *
99010419 GGCACCAGCTCCACCAT-CGGCTGGCTTAAATGGAAGTTGTAGC-CGTAGCATCAGCCTGGTTAG
1 GGCACCAGCTCCACC-TCCGGCTAGCTTAAATGGAAGTTGTAGCAC-TAGCATCAGCCTGATTAG
* * *
99010482 CAGTGGTGCTAGCAATAGCAGCAGCAGTGGTGTATTTGCAAGCTTATTTGCCTCCTCAACTGTTT
64 CAGTGGT--T-G---TAGCAGCAGCAGCGGTGTATTTGCAAGCTTATTTACCTCCTCAACTGTAT
99010547 CTGCAAGCATACAACCTCCTCAACCTCC
123 CTGCAAGCATACAACCTCCTCAACCTCC
99010575 TGCTTTAACC
Statistics
Matches: 134, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
149 1 0.01
150 60 0.45
151 1 0.01
152 1 0.01
153 1 0.01
156 70 0.52
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (150 bp):
GGCACCAGCTCCACCTCCGGCTAGCTTAAATGGAAGTTGTAGCACTAGCATCAGCCTGATTAGCA
GTGGTTGTAGCAGCAGCAGCGGTGTATTTGCAAGCTTATTTACCTCCTCAACTGTATCTGCAAGC
ATACAACCTCCTCAACCTCC
Found at i:99013612 original size:90 final size:89
Alignment explanation
Indices: 99013431--99013650 Score: 234
Period size: 90 Copynumber: 2.5 Consensus size: 89
99013421 TAATTGAGTG
** * * *
99013431 CAAAAAAA-ATAGGGGTTTAATTG--TTTTTTTTAAAAATTTGAGGGTATTTTTGATACATTTTA
1 CAAAAAAATATAGGGACTTAATTGCTTTTTTTTTTAAAATTTGAAGGCATTTTTGATACATTTTA
*
99013493 AAAGTTCAAGTACAGAATCAAATA
66 AAAGTTCAAGTACACAATCAAATA
* * * *
99013517 CAAAAAAA-A-GGGCAGAGCTTAATTGCTTTTTTTTTTAAAGTTTGAAGGCCTTTTTGATTCATT
1 CAAAAAAATATAGG--GA-CTTAATTGCTTTTTTTTTTAAAATTTGAAGGCATTTTTGATACATT
* * ** *
99013580 TTGAAAGTTCAAGTACCCAATTGAGTA
63 TTAAAAGTTCAAGTACACAATCAAATA
*
99013607 TAAAAAAATATAGGGACTTAATTGCTTTTTTTTTTAAAATTTGA
1 CAAAAAAATATAGGGACTTAATTGCTTTTTTTTTTAAAATTTGA
99013651 GGGGTTTTCA
Statistics
Matches: 109, Mismatches: 18, Indels: 11
0.79 0.13 0.08
Matches are distributed among these distances:
85 2 0.02
86 9 0.08
87 1 0.01
88 7 0.06
89 27 0.25
90 60 0.55
91 1 0.01
92 2 0.02
ACGTcount: A:0.37, C:0.08, G:0.15, T:0.40
Consensus pattern (89 bp):
CAAAAAAATATAGGGACTTAATTGCTTTTTTTTTTAAAATTTGAAGGCATTTTTGATACATTTTA
AAAGTTCAAGTACACAATCAAATA
Found at i:99014608 original size:59 final size:57
Alignment explanation
Indices: 99014498--99014646 Score: 147
Period size: 59 Copynumber: 2.5 Consensus size: 57
99014488 ATTATAGACC
* * *
99014498 AACTTGGACCAAAAATAATTCAAGCCCCAATACACGAACAATTGCCAAGTTCAGGACT
1 AACTTGGACAAAAAAAAATTCAAGCCCCAATACAC-AAAAATTGCCAAGTTCAGGACT
* * *
99014556 AACTTGGACAAAAAAAAAAGTTCAAGCCCCAATGAGA-AAAAATTGCCAAGTTCAGAAATT
1 AACTTGGAC-AAAAAAAAA-TTCAAGCCCCAAT-ACACAAAAATTGCCAAGTTCAG-GACT
** * * *
99014616 ATTTTGGACAAAAAAAAGTACAAGCCTCAAT
1 AACTTGGACAAAAAAAAATTCAAGCCCCAAT
99014647 GTGGATGTAG
Statistics
Matches: 76, Mismatches: 11, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
58 20 0.26
59 32 0.42
60 22 0.29
61 2 0.03
ACGTcount: A:0.46, C:0.20, G:0.14, T:0.19
Consensus pattern (57 bp):
AACTTGGACAAAAAAAAATTCAAGCCCCAATACACAAAAATTGCCAAGTTCAGGACT
Found at i:99017833 original size:156 final size:156
Alignment explanation
Indices: 99017538--99017820 Score: 396
Period size: 153 Copynumber: 1.8 Consensus size: 156
99017528 AAGCCGGAGT
* *
99017538 TTGAGGAGGTTGTATGCTTGCAGATACAGTCGAGGAGGCAAATAAGCTTGCAAATACACCACTAC
1 TTGAGGAGGGTGTATGCTCGCAGATACAGTCGAGGAGGCAAATAAGCTTGCAAATACACCACTAC
* * *
99017603 TGCTACTGCTGCTAGCACCACTGCTAACCAGGCTGACACTACCGCTACAACTTCCATTTAAGCCA
66 TGCTACTGCTACTAGCACCACTGCTAACCAAGCTAACACTACCGCTACAACTTCCATTTAAGCCA
99017668 ACCAGTGGAGGAGCTGGTGCCAGAGG
131 ACCAGTGGAGGAGCTGGTGCCAGAGG
* * * *
99017694 TTGAGGAGGGTGTATGCTCGCAGATACAGTCGTGGAGGTAAATAAG-TT-CGAAA-ATA-CACTG
1 TTGAGGAGGGTGTATGCTCGCAGATACAGTCGAGGAGGCAAATAAGCTTGC-AAATACACCACTA
* * * *
99017755 CTGCTGCTGCTATTA-CAACCACTGCTAACCAAGCTAACACTACTGCTAGAACTTCCATTTAAGC
65 CTGCTACTGCTACTAGC-ACCACTGCTAACCAAGCTAACACTACCGCTACAACTTCCATTTAAGC
99017819 CA
129 CA
99017821 GCCGGTGGTG
Statistics
Matches: 112, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
152 1 0.01
153 61 0.54
154 3 0.03
155 5 0.04
156 42 0.38
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.23
Consensus pattern (156 bp):
TTGAGGAGGGTGTATGCTCGCAGATACAGTCGAGGAGGCAAATAAGCTTGCAAATACACCACTAC
TGCTACTGCTACTAGCACCACTGCTAACCAAGCTAACACTACCGCTACAACTTCCATTTAAGCCA
ACCAGTGGAGGAGCTGGTGCCAGAGG
Found at i:99021820 original size:11 final size:12
Alignment explanation
Indices: 99021804--99021850 Score: 53
Period size: 11 Copynumber: 4.1 Consensus size: 12
99021794 ATTCGGTACA
99021804 ATTTTATT-TTT
1 ATTTTATTATTT
99021815 ATTTTATTATTT
1 ATTTTATTATTT
*
99021827 -TTTTAATATTT
1 ATTTTATTATTT
* *
99021838 AATTTATCATTT
1 ATTTTATTATTT
99021850 A
1 A
99021851 AATCATTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
11 18 0.60
12 12 0.40
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (12 bp):
ATTTTATTATTT
Found at i:99022092 original size:44 final size:47
Alignment explanation
Indices: 99022028--99022135 Score: 168
Period size: 44 Copynumber: 2.3 Consensus size: 47
99022018 GAAATAGCAG
* *
99022028 GAAGGAAAGAATGAAAGAGGAGAGAATGTGGCTTGAGGTAAGCTA-G-
1 GAAGGAGAG-ATGTAAGAGGAGAGAATGTGGCTTGAGGTAAGCTAGGA
99022074 G-AGGAGAGATGTAAGAGGAGAGAATGTGGCTTGAGGTAAGCTAGGA
1 GAAGGAGAGATGTAAGAGGAGAGAATGTGGCTTGAGGTAAGCTAGGA
99022120 GAAGGAGAGATGTAAG
1 GAAGGAGAGATGTAAG
99022136 TAGTTGGGTC
Statistics
Matches: 57, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
44 34 0.60
45 7 0.12
46 2 0.04
47 14 0.25
ACGTcount: A:0.39, C:0.04, G:0.42, T:0.16
Consensus pattern (47 bp):
GAAGGAGAGATGTAAGAGGAGAGAATGTGGCTTGAGGTAAGCTAGGA
Found at i:99028007 original size:31 final size:31
Alignment explanation
Indices: 99027962--99028035 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 31
99027952 GATTTTGTAC
*
99027962 AATTATACACATGAAACTTTGA-TTGTGATTT
1 AATTATATACATGAAA-TTTGATTTGTGATTT
* *
99027993 AGATT-TATACATGAAATTTTATTTTTGATTT
1 A-ATTATATACATGAAATTTGATTTGTGATTT
99028024 AATTATATACAT
1 AATTATATACAT
99028036 TTAAGTAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
30 7 0.19
31 27 0.73
32 3 0.08
ACGTcount: A:0.36, C:0.07, G:0.09, T:0.47
Consensus pattern (31 bp):
AATTATATACATGAAATTTGATTTGTGATTT
Found at i:99037646 original size:18 final size:20
Alignment explanation
Indices: 99037619--99037665 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
99037609 GTAAATAAAA
99037619 AAAT-TGATAAT-TATTTA-
1 AAATATGATAATGTATTTAT
*
99037636 AATTATGATAATGTATTTAT
1 AAATATGATAATGTATTTAT
99037656 AAATATGATA
1 AAATATGATA
99037666 TGATTATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 3 0.12
18 7 0.28
19 6 0.24
20 9 0.36
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.45
Consensus pattern (20 bp):
AAATATGATAATGTATTTAT
Found at i:99037958 original size:16 final size:16
Alignment explanation
Indices: 99037912--99037968 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 16
99037902 AAATAATTGG
* *
99037912 TAATTTCGAGTTTTAA
1 TAATTTTGAGTTTGAA
* *
99037928 TCATTATTGAATTTGAA
1 TAATT-TTGAGTTTGAA
*
99037945 TAATTTTGAGTTTGGA
1 TAATTTTGAGTTTGAA
*
99037961 TCATTTTG
1 TAATTTTG
99037969 GCTTATAGTT
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
16 20 0.62
17 12 0.38
ACGTcount: A:0.28, C:0.05, G:0.16, T:0.51
Consensus pattern (16 bp):
TAATTTTGAGTTTGAA
Found at i:99038309 original size:15 final size:15
Alignment explanation
Indices: 99038283--99038315 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
99038273 TATTAACCTT
99038283 TTACTATCAAATTGAA
1 TTACTATCAAATT-AA
99038299 TTACT-TCAAATTAA
1 TTACTATCAAATTAA
99038313 TTA
1 TTA
99038316 AGTTTAAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.29
15 7 0.41
16 5 0.29
ACGTcount: A:0.42, C:0.12, G:0.03, T:0.42
Consensus pattern (15 bp):
TTACTATCAAATTAA
Found at i:99044888 original size:7 final size:8
Alignment explanation
Indices: 99044867--99044896 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
99044857 TCTCATGAAT
99044867 TCAAAAAA
1 TCAAAAAA
99044875 TCAAAAAA
1 TCAAAAAA
99044883 TCAAAAAAA
1 TC-AAAAAA
99044892 TCAAA
1 TCAAA
99044897 GTCAAAATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.73, C:0.13, G:0.00, T:0.13
Consensus pattern (8 bp):
TCAAAAAA
Found at i:99045864 original size:53 final size:53
Alignment explanation
Indices: 99045784--99045889 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
99045774 ATAAAAGAGG
99045784 ATTGAGGAAAAACCATATTTCTACCCTTGGATTGTAGTGGGAGAATGATGGTA
1 ATTGAGGAAAAACCATATTTCTACCCTTGGATTGTAGTGGGAGAATGATGGTA
99045837 ATTGAGGAAAAACCATATTTCTACCCTTGGATTGTAGTGGGAGAATGATGGTA
1 ATTGAGGAAAAACCATATTTCTACCCTTGGATTGTAGTGGGAGAATGATGGTA
99045890 CAAATTTTGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.30
Consensus pattern (53 bp):
ATTGAGGAAAAACCATATTTCTACCCTTGGATTGTAGTGGGAGAATGATGGTA
Found at i:99046432 original size:88 final size:88
Alignment explanation
Indices: 99046204--99046808 Score: 891
Period size: 88 Copynumber: 6.9 Consensus size: 88
99046194 CAATGAAGTT
* * * * *
99046204 AAAGATCTTGCCTTCCTGCATTGACAGTGAAACAGGTTGAAGACATAAACCTTGCCTCTTTCGGT
1 AAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
*
99046269 TGTGATAGAGCTGGTTGAAGACA
66 TGTGATGGAGCTGGTTGAAGACA
*
99046292 AAAG--CTTGCCTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
1 AAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
99046355 TGTGATGGAGCTGGTTGAAGACA
66 TGTGATGGAGCTGGTTGAAGACA
*
99046378 AAAGATCTTGCCTTTCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
1 AAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
99046443 TGTGATGGAGCTGGTTGAAGACA
66 TGTGATGGAGCTGGTTGAAGACA
* *
99046466 AAAGATCTTGCCTTTCTGCATTGACAGCGAAGCAGATTGAAGACACAAACCTTGCCTCTTTCGGT
1 AAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
99046531 TGTGATGGAGCTGGTTGAAGACA
66 TGTGATGGAGCTGGTTGAAGACA
*
99046554 AAAGATCTTGCCTTTCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
1 AAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
*
99046619 TGTGATAGAGCTGGTTGAAGACA
66 TGTGATGGAGCTGGTTGAAGACA
* * * *
99046642 AAAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGGTCGAAGACACCAACCTTGCCTCTCTCGGT
1 AAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
* * *
99046707 TG-CAGTGGAGCTAGTTAAAGA-A
66 TGTGA-TGGAGCTGGTTGAAGACA
** * * * **
99046729 GCAGATCTTGCCTTCCTGCATTAACAGCAAAGCAGATC-AA-AAACAAAGCCTTGCCTCCATCGG
1 AAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA-CCTTGCCTCTTTCGG
*
99046792 TTG-CATTGGAGCTGGTT
65 TTGTGA-TGGAGCTGGTT
99046809 AAAGGTTACA
Statistics
Matches: 480, Mismatches: 33, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
85 5 0.01
86 109 0.23
87 34 0.07
88 332 0.69
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (88 bp):
AAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTTTCGGT
TGTGATGGAGCTGGTTGAAGACA
Found at i:99047061 original size:43 final size:43
Alignment explanation
Indices: 99047012--99047167 Score: 125
Period size: 43 Copynumber: 3.4 Consensus size: 43
99047002 ACTGTGACTA
* *
99047012 CAGTGGAGTATATTGAAGCCGATAATTCTATCTCCCTGGTTGG
1 CAGTGGAATAGATTGAAGCCGATAATTCTATCTCCCTGGTTGG
* * * *
99047055 CAGTGGAATAGATTGAAGATCATAGATGGCAGATTCTACCTCCCTGTGACT-A
1 CAGTGGAATAGATTGAAG--C--CGAT---A-ATTCTATCTCCCTG-G-TTGG
* * *
99047107 CAGTGGAGTACATTGAAGTCGATAATTCTATCTCCCTGGTTGG
1 CAGTGGAATAGATTGAAGCCGATAATTCTATCTCCCTGGTTGG
*
99047150 CAATGGAATAGATTGAAG
1 CAGTGGAATAGATTGAAG
99047168 ATTTCAGATC
Statistics
Matches: 86, Mismatches: 16, Indels: 22
0.69 0.13 0.18
Matches are distributed among these distances:
42 1 0.01
43 32 0.37
44 13 0.15
45 2 0.02
47 3 0.03
48 3 0.03
50 1 0.01
51 13 0.15
52 17 0.20
53 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.29
Consensus pattern (43 bp):
CAGTGGAATAGATTGAAGCCGATAATTCTATCTCCCTGGTTGG
Found at i:99047157 original size:95 final size:95
Alignment explanation
Indices: 99046990--99047169 Score: 315
Period size: 95 Copynumber: 1.9 Consensus size: 95
99046980 CTAAAGCCAG
* *
99046990 AGATTTTACCTCACTGTGACTACAGTGGAGTATATTGAAGCCGATAATTCTATCTCCCTGGTTGG
1 AGATTCTACCTCACTGTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGGTTGG
*
99047055 CAGTGGAATAGATTGAAGATCATAGATGGC
66 CAATGGAATAGATTGAAGATCATAGATGGC
* *
99047085 AGATTCTACCTCCCTGTGACTACAGTGGAGTACATTGAAGTCGATAATTCTATCTCCCTGGTTGG
1 AGATTCTACCTCACTGTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGGTTGG
99047150 CAATGGAATAGATTGAAGAT
66 CAATGGAATAGATTGAAGAT
99047170 TTCAGATCTT
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
95 80 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (95 bp):
AGATTCTACCTCACTGTGACTACAGTGGAGTACATTGAAGCCGATAATTCTATCTCCCTGGTTGG
CAATGGAATAGATTGAAGATCATAGATGGC
Found at i:99052705 original size:218 final size:220
Alignment explanation
Indices: 99052292--99052732 Score: 636
Period size: 218 Copynumber: 2.0 Consensus size: 220
99052282 AGTTCAAGTC
* * * * *
99052292 TTTTTTTAAAATAATTCACGCTAGACCGTGATGAATGCAAAGTGCCACTTGATCTGTAGAGGTGT
1 TTTTTTTAAAATAATCCACACTAGACCATGATGAATGCAAAGTGCCACTTGATCTGTAGAGATGG
* * *
99052357 GTGAAATCAGTTTTGTCAAAGCTGTAGTTAAATCTTTTTCCGGGCTTTTTCCCCTCTAGAGTTTG
66 GTGAAATCAGTTCTGTCAAAGCTGTAGTTAAATCTTTTTCCAGGCTTTTTCCCCTCTAGAATTTG
* **
99052422 AAGCTCCAATGAAGTGACATTTGCCAAGGTGTTGCAATTAGGTTGGAATATTTATTTTGCAAAAT
131 AAGCTCCAATGAAGTGACATTTGCCAAGGTGTTGCAATTAGGTTGGAATATTCATTTCACAAAAT
* * *
99052487 TTTGG-ATGGGGGTGAATCTGTAAGG
196 TCTGGTA-GGAGGTGAAGCTGTAAGG
* * *
99052512 TTTTTTT-ATATAATCCACACTAGACCATGATGAATGCAAAGTGCCTCTTGGTCTGTAGAGATGG
1 TTTTTTTAAAATAATCCACACTAGACCATGATGAATGCAAAGTGCCACTTGATCTGTAGAGATGG
* *
99052576 GTGAAATCAGTTCTGTCATAGCTGTAGTT-AATCTTTTTCTAGGCTTTTTCCCCTCTAGAATTTG
66 GTGAAATCAGTTCTGTCAAAGCTGTAGTTAAATCTTTTTCCAGGCTTTTTCCCCTCTAGAATTTG
* * * *
99052640 AAGCTCCAATTAGGTGACATTTGCCAGGGTGTTGCAATTAGGTTGGAATGTTCATTTCACAAAAT
131 AAGCTCCAATGAAGTGACATTTGCCAAGGTGTTGCAATTAGGTTGGAATATTCATTTCACAAAAT
*
99052705 TCTGGTAGGAGGTGAAGGTGTAAGG
196 TCTGGTAGGAGGTGAAGCTGTAAGG
99052730 TTT
1 TTT
99052733 GGTGATTCAT
Statistics
Matches: 196, Mismatches: 24, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
218 112 0.57
219 77 0.39
220 7 0.04
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (220 bp):
TTTTTTTAAAATAATCCACACTAGACCATGATGAATGCAAAGTGCCACTTGATCTGTAGAGATGG
GTGAAATCAGTTCTGTCAAAGCTGTAGTTAAATCTTTTTCCAGGCTTTTTCCCCTCTAGAATTTG
AAGCTCCAATGAAGTGACATTTGCCAAGGTGTTGCAATTAGGTTGGAATATTCATTTCACAAAAT
TCTGGTAGGAGGTGAAGCTGTAAGG
Found at i:99056769 original size:15 final size:15
Alignment explanation
Indices: 99056758--99056793 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
99056748 GCCGGAGTCT
99056758 GATGAAGAGGAGGAA
1 GATGAAGAGGAGGAA
* *
99056773 GATGAAGAGGATGAT
1 GATGAAGAGGAGGAA
99056788 GATGAA
1 GATGAA
99056794 TATGATCCAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.42, T:0.14
Consensus pattern (15 bp):
GATGAAGAGGAGGAA
Found at i:99059767 original size:26 final size:25
Alignment explanation
Indices: 99059738--99059786 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
99059728 CAACTTTAGA
99059738 TGAACTAAATTTAAAATGATTTGACT
1 TGAACTAAA-TTAAAATGATTTGACT
** *
99059764 TGAACTTGATTAAAATTATTTGA
1 TGAACTAAATTAAAATGATTTGA
99059787 ATTTATAATG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 13 0.65
26 7 0.35
ACGTcount: A:0.41, C:0.06, G:0.12, T:0.41
Consensus pattern (25 bp):
TGAACTAAATTAAAATGATTTGACT
Found at i:99065097 original size:45 final size:45
Alignment explanation
Indices: 99065032--99065117 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
99065022 AATGGCTATG
*
99065032 GTGGCGGCAATGGATGGAGTTCGTCATCCCCAATGCCACCACCAA
1 GTGGCGGCAATGGATGGAGTTCATCATCCCCAATGCCACCACCAA
*
99065077 GTGGTGGCAATGGATGGAGTTCATCATCCCCAATGCCACCA
1 GTGGCGGCAATGGATGGAGTTCATCATCCCCAATGCCACCA
99065118 GGACCAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.24, C:0.29, G:0.27, T:0.20
Consensus pattern (45 bp):
GTGGCGGCAATGGATGGAGTTCATCATCCCCAATGCCACCACCAA
Found at i:99070480 original size:18 final size:17
Alignment explanation
Indices: 99070454--99070494 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
99070444 ATTTAATTTT
99070454 CATAT-TATATAAAATA
1 CATATATATATAAAATA
99070470 CATA-ATATATAAAA-A
1 CATATATATATAAAATA
99070485 -ATATATATAT
1 CATATATATAT
99070495 TATAAACTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
14 3 0.13
15 7 0.30
16 13 0.57
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (17 bp):
CATATATATATAAAATA
Found at i:99070498 original size:18 final size:18
Alignment explanation
Indices: 99070455--99070500 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
99070445 TTTAATTTTC
*
99070455 ATATTATATAAAATACAT
1 ATATTATAAAAAATACAT
*
99070473 A-ATATATAAAAAATATAT
1 ATAT-TATAAAAAATACAT
99070491 ATATTATAAA
1 ATATTATAAA
99070501 CTTGAAAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 2 0.08
18 20 0.83
19 2 0.08
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (18 bp):
ATATTATAAAAAATACAT
Found at i:99092392 original size:60 final size:60
Alignment explanation
Indices: 99092318--99092440 Score: 246
Period size: 60 Copynumber: 2.0 Consensus size: 60
99092308 CCGTTTTATC
99092318 ATTTAAAATTTATTTTATCCAATCTATAATAATATTTAAATAAAATTATTTTAATAAAAA
1 ATTTAAAATTTATTTTATCCAATCTATAATAATATTTAAATAAAATTATTTTAATAAAAA
99092378 ATTTAAAATTTATTTTATCCAATCTATAATAATATTTAAATAAAATTATTTTAATAAAAA
1 ATTTAAAATTTATTTTATCCAATCTATAATAATATTTAAATAAAATTATTTTAATAAAAA
99092438 ATT
1 ATT
99092441 CATAAAAATA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 63 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.46
Consensus pattern (60 bp):
ATTTAAAATTTATTTTATCCAATCTATAATAATATTTAAATAAAATTATTTTAATAAAAA
Found at i:99093617 original size:15 final size:15
Alignment explanation
Indices: 99093597--99093641 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
99093587 CAAGAACAAG
*
99093597 AGCAACAACAGCAGC
1 AGCAACAACAACAGC
99093612 AGCAACAACAACAGC
1 AGCAACAACAACAGC
*
99093627 AGCAGCAACAACAGC
1 AGCAACAACAACAGC
99093642 TTCTTGGTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.49, C:0.33, G:0.18, T:0.00
Consensus pattern (15 bp):
AGCAACAACAACAGC
Found at i:99093620 original size:18 final size:18
Alignment explanation
Indices: 99093599--99093639 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
99093589 AGAACAAGAG
99093599 CAACAACAGCAGCAGCAA
1 CAACAACAGCAGCAGCAA
99093617 CAACAACAGCAGCAGCAA
1 CAACAACAGCAGCAGCAA
99093635 CAACA
1 CAACA
99093640 GCTTCTTGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.51, C:0.34, G:0.15, T:0.00
Consensus pattern (18 bp):
CAACAACAGCAGCAGCAA
Found at i:99123192 original size:55 final size:55
Alignment explanation
Indices: 99123131--99123242 Score: 224
Period size: 55 Copynumber: 2.0 Consensus size: 55
99123121 CTTTTAACGG
99123131 TAATTGAATCAATTATTACTAAATACTCAATACTAGAATTAGTATTTATAATTTT
1 TAATTGAATCAATTATTACTAAATACTCAATACTAGAATTAGTATTTATAATTTT
99123186 TAATTGAATCAATTATTACTAAATACTCAATACTAGAATTAGTATTTATAATTTT
1 TAATTGAATCAATTATTACTAAATACTCAATACTAGAATTAGTATTTATAATTTT
99123241 TA
1 TA
99123243 CTTCATAATT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 57 1.00
ACGTcount: A:0.42, C:0.09, G:0.05, T:0.44
Consensus pattern (55 bp):
TAATTGAATCAATTATTACTAAATACTCAATACTAGAATTAGTATTTATAATTTT
Found at i:99123225 original size:26 final size:26
Alignment explanation
Indices: 99123141--99123226 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
99123131 TAATTGAATC
99123141 AATTATTACTAAATACTCAATACTAG
1 AATTATTACTAAATACTCAATACTAG
* * ** * * *
99123167 AATTAGTATTTATAATTTTTAATTGAAT-C
1 AATTATTA-CTA-AATACTCAA-T-ACTAG
99123196 AATTATTACTAAATACTCAATACTAG
1 AATTATTACTAAATACTCAATACTAG
99123222 AATTA
1 AATTA
99123227 GTATTTATAA
Statistics
Matches: 41, Mismatches: 14, Indels: 10
0.63 0.22 0.15
Matches are distributed among these distances:
25 2 0.05
26 13 0.32
27 8 0.20
28 8 0.20
29 8 0.20
30 2 0.05
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (26 bp):
AATTATTACTAAATACTCAATACTAG
Done.