Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 294 of 295
Found at i:99604298 original size:14 final size:14
Alignment explanation
Indices: 99604279--99604306 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
99604269 TGCTTTATGA
99604279 ACTAATGTACATGG
1 ACTAATGTACATGG
99604293 ACTAATGTACATGG
1 ACTAATGTACATGG
99604307 CAGTTTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (14 bp):
ACTAATGTACATGG
Found at i:99612525 original size:21 final size:22
Alignment explanation
Indices: 99612478--99612525 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
99612468 CTTTTAAGAT
**
99612478 AATAATAATAAAAATATAATTT
1 AATAATAATAAAAATATAATAA
*
99612500 CATAAT-ATAAAAATATAATAA
1 AATAATAATAAAAATATAATAA
99612521 AATAA
1 AATAA
99612526 AAAAATCAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (22 bp):
AATAATAATAAAAATATAATAA
Found at i:99615479 original size:164 final size:162
Alignment explanation
Indices: 99615141--99615756 Score: 706
Period size: 164 Copynumber: 3.8 Consensus size: 162
99615131 TAACGTTGAC
* * * * * ** * *
99615141 AACTTAGACATATGTTGATGTAAAGACGTAAGTTTTGAGTCT-AGGACGGCAAGATGCCGGAGCT
1 AACTTAGACATACGTTGACGTAAGGA-GGAAGTTTTGAGCCTAAGG-CCACATGATACCGGAGCT
* * * * * * *
99615205 AAAATCTCT-TCCATCCTCATGCAACGGACGGACAAGTTTCGGGTACTCTTTAATAAAGGTAGGA
64 AAAGTCTCTGT-CATGCTCATGTAAC-GA---ACAAGTTTCGAGTACTC-TCAATAAATGTAAGA
* *
99615269 AAGTCAGCGTTACACATTAGAAAAAGTTGCATGTACATAT
123 AAATCAGCGTTACACATTAGAAAAAGTTGCATATACATAT
*
99615309 AACTTAGACATACCTTGACGTAAGGATGGAAGTTTTGAGCCTAAGGCCACATGATACCGGAGCTA
1 AACTTAGACATACGTTGACGTAAGGA-GGAAGTTTTGAGCCTAAGGCCACATGATACCGGAGCTA
*
99615374 AAGTCTCTGTCATGCTCATGTAACGGACAAGTTTCGAGTACTCGTCAATAAATGTAAGAAAATCA
65 AAGTCTCTGTCATGCTCATGTAACGAACAAGTTTCGAGTACTC-TCAATAAATGTAAGAAAATCA
* *
99615439 GTGTTACACATTAGAAAAAGTTGCATATACATAA
129 GCGTTACACATTAGAAAAAGTTGCATATACATAT
* * *
99615473 AACTTAGACATTCGTTGATGTAAGGACGGAAGTTTTGAGCTTAAGGCCACATGATACCGGAGCTA
1 AACTTAGACATACGTTGACGTAAGGA-GGAAGTTTTGAGCCTAAGGCCACATGATACCGGAGCTA
*
99615538 AAGTCTCTGTCATGCTCATGTAACCAACAAGTTTCGAGTACTCATCAATAAATGTAAGAAAATCA
65 AAGTCTCTGTCATGCTCATGTAACGAACAAGTTTCGAGTACTC-TCAATAAATGTAAGAAAATCA
* *
99615603 ACGTTACACATTAGAAAAAGTTGCTTATACATAT
129 GCGTTACACATTAGAAAAAGTTGCATATACATAT
* * * *
99615637 AACTTAGACATAAGTTGACAT-A--AGGACG--TTGAGCCTAAGGCCACATGATACTGGAGCTAA
1 AACTTAGACATACGTTGACGTAAGGAGGAAGTTTTGAGCCTAAGGCCACATGATACCGGAGCTAA
* * * * * * *
99615697 AGTGTCTGTCATACTCGTGTGATGAAGAAGTTTCGAGTACTCACTAATAAATGTAGAGAA
66 AGTCTCTGTCATGCTCATGTAACGAACAAGTTTCGAGTACTCTC-AATAAATGTA-AGAA
99615757 TTGCATATGT
Statistics
Matches: 393, Mismatches: 51, Indels: 17
0.85 0.11 0.04
Matches are distributed among these distances:
157 1 0.00
158 75 0.19
159 4 0.01
160 4 0.01
161 1 0.00
163 1 0.00
164 233 0.59
167 1 0.00
168 69 0.18
169 4 0.01
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (162 bp):
AACTTAGACATACGTTGACGTAAGGAGGAAGTTTTGAGCCTAAGGCCACATGATACCGGAGCTAA
AGTCTCTGTCATGCTCATGTAACGAACAAGTTTCGAGTACTCTCAATAAATGTAAGAAAATCAGC
GTTACACATTAGAAAAAGTTGCATATACATAT
Found at i:99638726 original size:66 final size:65
Alignment explanation
Indices: 99638613--99638787 Score: 206
Period size: 66 Copynumber: 2.6 Consensus size: 65
99638603 CGGACTATCC
* *** * * * **
99638613 TCAATATTCCGTTAGACACCGTAACGACCACTCAGCTCCGTCGTTTGCACCAACGGCTGAGTCTT
1 TCAATATTCCGTTAG-CACCATAACGGTTACTCAGATCCTTCTTTTGCACCAACGGCACAGTCTT
99638678 T
65 T
* *
99638679 TCAATATTCCGTTAGTCACCATAACGGTTACTCAGATCCTTCTTTTGCGCCAACGGCACCGTCTT
1 TCAATATTCCGTTAG-CACCATAACGGTTACTCAGATCCTTCTTTTGCACCAACGGCACAGTCTT
99638744 T
65 T
* *
99638745 TGAATATTCCGTTAGCGGCCATAACGGTTACTCAGATCCTTCT
1 TCAATATTCCGTTAGC-ACCATAACGGTTACTCAGATCCTTCT
99638788 CCTCCTTTAG
Statistics
Matches: 94, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
65 1 0.01
66 93 0.99
ACGTcount: A:0.22, C:0.30, G:0.17, T:0.31
Consensus pattern (65 bp):
TCAATATTCCGTTAGCACCATAACGGTTACTCAGATCCTTCTTTTGCACCAACGGCACAGTCTTT
Found at i:99644574 original size:5 final size:5
Alignment explanation
Indices: 99644566--99644591 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
99644556 TTACTTTATT
99644566 ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA A
99644592 ATATTTAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:99650421 original size:41 final size:41
Alignment explanation
Indices: 99650376--99650457 Score: 164
Period size: 41 Copynumber: 2.0 Consensus size: 41
99650366 ATTTGGGATT
99650376 GTGTTTATAATTTGGCATGATTCTTTTCCTTTAGTTAATCA
1 GTGTTTATAATTTGGCATGATTCTTTTCCTTTAGTTAATCA
99650417 GTGTTTATAATTTGGCATGATTCTTTTCCTTTAGTTAATCA
1 GTGTTTATAATTTGGCATGATTCTTTTCCTTTAGTTAATCA
99650458 AAATATCGTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.22, C:0.12, G:0.15, T:0.51
Consensus pattern (41 bp):
GTGTTTATAATTTGGCATGATTCTTTTCCTTTAGTTAATCA
Found at i:99662093 original size:4 final size:4
Alignment explanation
Indices: 99662077--99662126 Score: 91
Period size: 4 Copynumber: 12.5 Consensus size: 4
99662067 AGTCATGACC
*
99662077 ACAT ACTT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
99662125 AC
1 AC
99662127 CTTCCTGCCT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 44 1.00
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (4 bp):
ACAT
Found at i:99664005 original size:31 final size:32
Alignment explanation
Indices: 99663942--99664012 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 32
99663932 AATAACAACC
* *
99663942 CAGTGACTTAAAAATAAAAATTTTTAAATAGTT
1 CAGTGACTT-AAAATAAAAACTTTCAAATAGTT
*
99663975 CAGTGACTT-AAATGAAAACTTTCAAATAGTT
1 CAGTGACTTAAAATAAAAACTTTCAAATAGTT
*
99664006 TAGTGAC
1 CAGTGAC
99664013 CATTTTATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 25 0.74
33 9 0.26
ACGTcount: A:0.44, C:0.10, G:0.13, T:0.34
Consensus pattern (32 bp):
CAGTGACTTAAAATAAAAACTTTCAAATAGTT
Found at i:99667623 original size:31 final size:32
Alignment explanation
Indices: 99667546--99667623 Score: 97
Period size: 31 Copynumber: 2.5 Consensus size: 32
99667536 TAATAAAAAT
* ** *
99667546 AAAATTACACTTTAACCTTTTTAAAAATAATA
1 AAAATTACAATTTAATATTTTAAAAAATAATA
*
99667578 AAAATT-TAATTTAATATTTTAAAAAAT-ATA
1 AAAATTACAATTTAATATTTTAAAAAATAATA
99667608 AAAATTACAATTTAAT
1 AAAATTACAATTTAAT
99667624 TTGTGGTGTT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
30 9 0.23
31 24 0.62
32 6 0.15
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (32 bp):
AAAATTACAATTTAATATTTTAAAAAATAATA
Found at i:99677764 original size:18 final size:20
Alignment explanation
Indices: 99677720--99677769 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
99677710 GACTTATCTC
*
99677720 TTTCTTTCTTCTCCCGTTTT
1 TTTCTTTCTTCTCCCGTTCT
99677740 TTCTCTTTCTTCT-CC-TTCT
1 TT-TCTTTCTTCTCCCGTTCT
99677759 TTTCTTTCTTC
1 TTTCTTTCTTC
99677770 CTTTCCTTCT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 9 0.32
19 5 0.18
20 4 0.14
21 10 0.36
ACGTcount: A:0.00, C:0.32, G:0.02, T:0.66
Consensus pattern (20 bp):
TTTCTTTCTTCTCCCGTTCT
Found at i:99678667 original size:291 final size:291
Alignment explanation
Indices: 99678139--99678711 Score: 776
Period size: 291 Copynumber: 2.0 Consensus size: 291
99678129 AGCCAATACA
* * * *
99678139 AAGAAGCTAACCACTAGTGAAAGAACACAAGCAGACCTCGAACCAGTGTGCAGCAAGAACAAATT
1 AAGAAGCTAAACACTAGTGAAAGAACACAAGCAGACCTAGAACCAATGTGCAGCAAGAACAAATC
* * * * * * *
99678204 GAAGTTAAAGTGTCCCTCTTTCAATGTTACTAATTAAAAAGAAAGTCAGAAGATGTAAGCTTCAT
66 GAAGTGAAAGAGGCACTCTTTCAATGTTACTAATGAAAAAGAAACTCAGAAGATATAAGCTTCAT
* * *
99678269 GATCCATTAAATGATATTTCCTATTATATAACTTGCATGATTCTTTGTTCCATTCTCCAGAGTAA
131 AATCCATTAAATGA-ATTTCCCATTATATAACTTGCATGATTCTTTGTTCCAGTCTCCAGAGTAA
* * * * *
99678334 ATTTACATGCAGCTTTGGTACAAGTTAGGTTTCATGTTCAAGCAACATTTCACCATGGGCAAAAT
195 ATTTACATGCAGCTTTAGCACAAGCTAGGTTTCATGTTCAAGCAACATTCCACCATGGGCAAAAC
* * *
99678399 GCAATTTCACTAGATTCTAGCTAATACAAAGG
260 ACAATTTCACAAAATTCTAGCTAATACAAAGG
** *
99678431 AAGAAGCTAAACTGTAGTGAAAGAACACAAGCAGGCCTAGAACCAATGTGCAGCAAGAACAAATC
1 AAGAAGCTAAACACTAGTGAAAGAACACAAGCAGACCTAGAACCAATGTGCAGCAAGAACAAATC
* *
99678496 GAAGTGAAAGAGGGACTCTTTCACTGTTACTAATGAATAAA-AAACTCATTGAAGATATAAGCTT
66 GAAGTGAAAGAGGCACTCTTTCAATGTTACTAATGAA-AAAGAAACTCA--GAAGATATAAGCTT
** * *
99678560 CATAATCTGTTAAATG-A-TTCCCATTATATAACTTGCATGATTTTTTGTTCCAGTCTCCAG-TT
128 CATAATCCATTAAATGAATTTCCCATTATATAACTTGCATGATTCTTTGTTCCAGTCTCCAGAGT
* *
99678622 AAAATTTACATGCAGCTTTAGCACAAGCTAGGTTTCATTTTCAAGCAACATTCCACCATGTGCAA
193 -AAATTTACATGCAGCTTTAGCACAAGCTAGGTTTCATGTTCAAGCAACATTCCACCATGGGCAA
99678687 AACACAATTTCACAAAATTCTAGCT
257 AACACAATTTCACAAAATTCTAGCT
99678712 TATATCTTCA
Statistics
Matches: 244, Mismatches: 33, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
290 1 0.00
291 119 0.49
292 95 0.39
293 3 0.01
294 26 0.11
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.29
Consensus pattern (291 bp):
AAGAAGCTAAACACTAGTGAAAGAACACAAGCAGACCTAGAACCAATGTGCAGCAAGAACAAATC
GAAGTGAAAGAGGCACTCTTTCAATGTTACTAATGAAAAAGAAACTCAGAAGATATAAGCTTCAT
AATCCATTAAATGAATTTCCCATTATATAACTTGCATGATTCTTTGTTCCAGTCTCCAGAGTAAA
TTTACATGCAGCTTTAGCACAAGCTAGGTTTCATGTTCAAGCAACATTCCACCATGGGCAAAACA
CAATTTCACAAAATTCTAGCTAATACAAAGG
Found at i:99684673 original size:34 final size:33
Alignment explanation
Indices: 99684635--99684720 Score: 97
Period size: 32 Copynumber: 2.6 Consensus size: 33
99684625 TTTATTTTCT
* *
99684635 ATTAATTTATAATTTTATCATTTTTTTTGAAGGG
1 ATTAATATATAATTTTATCA-TTTTTTTGAAGAG
* *
99684669 ATTAA-ATAAAATATTTTTCA-TTTTTTGAAGAG
1 ATTAATATATAAT-TTTATCATTTTTTTGAAGAG
99684701 -TTAATATATAATTTTATCAT
1 ATTAATATATAATTTTATCAT
99684721 ATATTAACTT
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
31 10 0.23
32 17 0.40
33 5 0.12
34 11 0.26
ACGTcount: A:0.36, C:0.03, G:0.08, T:0.52
Consensus pattern (33 bp):
ATTAATATATAATTTTATCATTTTTTTGAAGAG
Found at i:99687765 original size:4 final size:4
Alignment explanation
Indices: 99687756--99687797 Score: 84
Period size: 4 Copynumber: 10.5 Consensus size: 4
99687746 TTCTTGCAGG
99687756 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TA
99687798 TGAAGTTTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (4 bp):
TACA
Found at i:99687899 original size:4 final size:4
Alignment explanation
Indices: 99687890--99687930 Score: 64
Period size: 4 Copynumber: 10.2 Consensus size: 4
99687880 ATGCAAGACC
* *
99687890 TACA TACA TACA TACA TACA TGCA TACC TACA TACA TACA T
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA T
99687931 GAAGTTTTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.44, C:0.27, G:0.02, T:0.27
Consensus pattern (4 bp):
TACA
Found at i:99687921 original size:20 final size:20
Alignment explanation
Indices: 99687892--99687931 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
99687882 GCAAGACCTA
99687892 CATACATACATACATACATG
1 CATACATACATACATACATG
*
99687912 CATACCTACATACATACATG
1 CATACATACATACATACATG
99687932 AAGTTTTAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.42, C:0.28, G:0.05, T:0.25
Consensus pattern (20 bp):
CATACATACATACATACATG
Found at i:99688646 original size:15 final size:15
Alignment explanation
Indices: 99688608--99688653 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
99688598 TTTACTTGTC
99688608 TTTAAAAAATTAAA-
1 TTTAAAAAATTAAAT
**
99688622 AATAATAAAATTAAAT
1 TTTAA-AAAATTAAAT
99688638 TTTAAAAAATTAAAT
1 TTTAAAAAATTAAAT
99688653 T
1 T
99688654 AAAGTGGGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
14 3 0.12
15 20 0.77
16 3 0.12
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TTTAAAAAATTAAAT
Found at i:99690705 original size:19 final size:19
Alignment explanation
Indices: 99690673--99690711 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
99690663 AAGTTAAACC
*
99690673 TTAAACTTTATAATTAAGT
1 TTAAACTTTATAATCAAGT
* *
99690692 TTAAATTTTTTAATCAAGT
1 TTAAACTTTATAATCAAGT
99690711 T
1 T
99690712 AGTCCTTAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.51
Consensus pattern (19 bp):
TTAAACTTTATAATCAAGT
Found at i:99692594 original size:130 final size:130
Alignment explanation
Indices: 99692427--99692688 Score: 524
Period size: 130 Copynumber: 2.0 Consensus size: 130
99692417 GCCAAAGATT
99692427 TGCATAATGGTTTAGGGAGAGTAGAGGGTACCATGCATCTCGAAGGGAATGCAGAATCTTGAAAG
1 TGCATAATGGTTTAGGGAGAGTAGAGGGTACCATGCATCTCGAAGGGAATGCAGAATCTTGAAAG
99692492 AGCACTGCAGCGATTTGCCTCAACTCGGTCACTTTAACACGAGAAGGTGGCCGTGGACCGTGTCG
66 AGCACTGCAGCGATTTGCCTCAACTCGGTCACTTTAACACGAGAAGGTGGCCGTGGACCGTGTCG
99692557 TGCATAATGGTTTAGGGAGAGTAGAGGGTACCATGCATCTCGAAGGGAATGCAGAATCTTGAAAG
1 TGCATAATGGTTTAGGGAGAGTAGAGGGTACCATGCATCTCGAAGGGAATGCAGAATCTTGAAAG
99692622 AGCACTGCAGCGATTTGCCTCAACTCGGTCACTTTAACACGAGAAGGTGGCCGTGGACCGTGTCG
66 AGCACTGCAGCGATTTGCCTCAACTCGGTCACTTTAACACGAGAAGGTGGCCGTGGACCGTGTCG
99692687 TG
1 TG
99692689 GAGCTTTTGG
Statistics
Matches: 132, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
130 132 1.00
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.23
Consensus pattern (130 bp):
TGCATAATGGTTTAGGGAGAGTAGAGGGTACCATGCATCTCGAAGGGAATGCAGAATCTTGAAAG
AGCACTGCAGCGATTTGCCTCAACTCGGTCACTTTAACACGAGAAGGTGGCCGTGGACCGTGTCG
Found at i:99694167 original size:32 final size:32
Alignment explanation
Indices: 99694107--99694168 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
99694097 TTAATCAAAA
* * **
99694107 TGAGTTATCAAATTTAATTAATTTATTTATCT
1 TGAGTTATCAAATTCAAGTAATCAATTTATCT
*
99694139 TGAGTTATTAAATTCAAGTAATCAATTTAT
1 TGAGTTATCAAATTCAAGTAATCAATTTAT
99694169 AAGTTTATAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.37, C:0.06, G:0.08, T:0.48
Consensus pattern (32 bp):
TGAGTTATCAAATTCAAGTAATCAATTTATCT
Found at i:99694352 original size:16 final size:17
Alignment explanation
Indices: 99694317--99694353 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
99694307 AATTTAGACA
*
99694317 TTTAATTGAAATAATAT
1 TTTAATTAAAATAATAT
99694334 TTTAATTAAAATAAT-T
1 TTTAATTAAAATAATAT
99694350 TTTA
1 TTTA
99694354 TATAATAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (17 bp):
TTTAATTAAAATAATAT
Found at i:99695474 original size:102 final size:102
Alignment explanation
Indices: 99695298--99695503 Score: 412
Period size: 102 Copynumber: 2.0 Consensus size: 102
99695288 ACTATATACT
99695298 ATTTTTTTCCCGCTGATGTAAACCTAGTGTTTGAGTAACCACACGTTGTAACGAGGGGCCATGAA
1 ATTTTTTTCCCGCTGATGTAAACCTAGTGTTTGAGTAACCACACGTTGTAACGAGGGGCCATGAA
99695363 TTGAAATTCTAAAACCTGACATTCAAATGAAAGAAAA
66 TTGAAATTCTAAAACCTGACATTCAAATGAAAGAAAA
99695400 ATTTTTTTCCCGCTGATGTAAACCTAGTGTTTGAGTAACCACACGTTGTAACGAGGGGCCATGAA
1 ATTTTTTTCCCGCTGATGTAAACCTAGTGTTTGAGTAACCACACGTTGTAACGAGGGGCCATGAA
99695465 TTGAAATTCTAAAACCTGACATTCAAATGAAAGAAAA
66 TTGAAATTCTAAAACCTGACATTCAAATGAAAGAAAA
99695502 AT
1 AT
99695504 CATAATTCTC
Statistics
Matches: 104, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
102 104 1.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.29
Consensus pattern (102 bp):
ATTTTTTTCCCGCTGATGTAAACCTAGTGTTTGAGTAACCACACGTTGTAACGAGGGGCCATGAA
TTGAAATTCTAAAACCTGACATTCAAATGAAAGAAAA
Found at i:99697327 original size:19 final size:20
Alignment explanation
Indices: 99697300--99697341 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
99697290 CCATTCATTC
99697300 AAATAATTATAAT-TAAAAT
1 AAATAATTATAATATAAAAT
* *
99697319 AAATTATTATAATATACAAT
1 AAATAATTATAATATAAAAT
99697339 AAA
1 AAA
99697342 ATTAAAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (20 bp):
AAATAATTATAATATAAAAT
Found at i:99700140 original size:13 final size:14
Alignment explanation
Indices: 99700108--99700141 Score: 52
Period size: 13 Copynumber: 2.4 Consensus size: 14
99700098 ATTGGTTAAA
99700108 AATAATAATAAAATG
1 AATAA-AATAAAATG
99700123 AATAAAATAAAA-G
1 AATAAAATAAAATG
99700136 AATAAA
1 AATAAA
99700142 GGTGTCATCT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.37
14 7 0.37
15 5 0.26
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.21
Consensus pattern (14 bp):
AATAAAATAAAATG
Found at i:99701125 original size:28 final size:28
Alignment explanation
Indices: 99701091--99701155 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
99701081 TCAGTGTACG
* *
99701091 AAATATTGAGAATGGCACTTAATGTGCG
1 AAATATTGAGAATGACACTTAATGTGCA
* *
99701119 AGATATTGAGAATGACACTTAGTGTGCA
1 AAATATTGAGAATGACACTTAATGTGCA
99701147 AAATATTGA
1 AAATATTGA
99701156 ATGATTAAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.29
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAATGTGCA
Found at i:99701272 original size:39 final size:39
Alignment explanation
Indices: 99701228--99701484 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 39
99701218 GACTTTATAA
*
99701228 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGT
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* *
99701267 TGGTGTTATATTCGGGCTAAGTCCTGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
99701306 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* * * *
99701345 TAGTGTTATATCCGGGCGAAGTCCCAAAGGCATTTGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
*
99701384 TGGTG-T-TA---GGGCTAAGCCCCGAAGGCATTCGTGC
1 TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
* * *
99701418 TGGTGTTATATCTGGGCTAAAGTCCCGCAGGC-TTTGTGC
1 TGGTGTTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGC
*
99701457 TGGTATTATATCCGGGCTTAAAGTCCCG
1 TGGTGTTATATCCGGGC-T-AAGTCCCG
99701485 CATGCTTTGT
Statistics
Matches: 192, Mismatches: 19, Indels: 13
0.86 0.08 0.06
Matches are distributed among these distances:
34 27 0.14
35 1 0.01
36 2 0.01
37 2 0.01
38 1 0.01
39 138 0.72
40 21 0.11
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (39 bp):
TGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGC
Found at i:99701435 original size:112 final size:115
Alignment explanation
Indices: 99701230--99701473 Score: 334
Period size: 112 Copynumber: 2.1 Consensus size: 115
99701220 CTTTATAATG
* * * * *
99701230 GTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGTTGGTGTTATATTCGGGCTAAGTCCTGAA
1 GTGTTATATCCGGGCGAAGTCCCAAAGGCATTCGTGCTGGTGTTATA-T-GGGCTAAGCCCCGAA
99701295 GGCATTCGTGCTGGTGTTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTA
64 GGCATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCCGAAGGC-TTCGTGCTA
*
99701347 GTGTTATATCCGGGCGAAGTCCCAAAGGCATTTGTGCTGGTG-T-TA-GGGCTAAGCCCCGAAGG
1 GTGTTATATCCGGGCGAAGTCCCAAAGGCATTCGTGCTGGTGTTATATGGGCTAAGCCCCGAAGG
* * * *
99701409 CATTCGTGCTGGTGTTATATCTGGGCTAAAGTCCCGCAGGCTTTGTGCTG
66 CATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCCGAAGGCTTCGTGCTA
*
99701459 GTATTATATCCGGGC
1 GTGTTATATCCGGGC
99701474 TTAAAGTCCC
Statistics
Matches: 115, Mismatches: 11, Indels: 7
0.86 0.08 0.05
Matches are distributed among these distances:
112 62 0.54
113 12 0.10
115 2 0.02
116 1 0.01
117 38 0.33
ACGTcount: A:0.18, C:0.21, G:0.31, T:0.30
Consensus pattern (115 bp):
GTGTTATATCCGGGCGAAGTCCCAAAGGCATTCGTGCTGGTGTTATATGGGCTAAGCCCCGAAGG
CATTCGTGCTGGTGTTATATCCGGGCTAAAGTCCCGAAGGCTTCGTGCTA
Found at i:99706576 original size:10 final size:11
Alignment explanation
Indices: 99706561--99706589 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
99706551 CTCGCGAGTT
99706561 TTTAATTATG-
1 TTTAATTATGA
99706571 TTTAATTATGA
1 TTTAATTATGA
99706582 TTTAATTA
1 TTTAATTA
99706590 ATTTATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (11 bp):
TTTAATTATGA
Found at i:99708486 original size:11 final size:11
Alignment explanation
Indices: 99708472--99708558 Score: 59
Period size: 11 Copynumber: 7.5 Consensus size: 11
99708462 TAAATACATT
99708472 TAAAATAATAA
1 TAAAATAATAA
99708483 TAAAATTAATAA
1 TAAAA-TAATAA
* *
99708495 TAAAATAAGAG
1 TAAAATAATAA
* * *
99708506 TTATATAATAT
1 TAAAATAATAA
*
99708517 TCAAATAATAA
1 TAAAATAATAA
*
99708528 CAACAA-AATAA
1 TAA-AATAATAA
99708539 TAGTAATATAATAA
1 TA--AA-ATAATAA
99708553 TAAAAT
1 TAAAAT
99708559 TATAGCAGAA
Statistics
Matches: 58, Mismatches: 12, Indels: 12
0.71 0.15 0.15
Matches are distributed among these distances:
11 33 0.57
12 16 0.28
13 2 0.03
14 7 0.12
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.30
Consensus pattern (11 bp):
TAAAATAATAA
Found at i:99708494 original size:12 final size:12
Alignment explanation
Indices: 99708472--99708500 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
99708462 TAAATACATT
99708472 TAAAA-TAATAA
1 TAAAATTAATAA
99708483 TAAAATTAATAA
1 TAAAATTAATAA
99708495 TAAAAT
1 TAAAAT
99708501 AAGAGTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (12 bp):
TAAAATTAATAA
Found at i:99711352 original size:124 final size:129
Alignment explanation
Indices: 99711201--99711438 Score: 369
Period size: 129 Copynumber: 1.9 Consensus size: 129
99711191 AATCTCGAAA
99711201 ATATGTTAAATAAGTTTATGCATATATAT-A-TACATA-GCTTGATTAACTTCAATGAAGTGATA
1 ATATGTTAAATAAGTTTATGCATATATATCATTACATAGGCTTGATTAACTTCAATGAAGTGATA
* *
99711263 CGAGTAGTCGGTATTTGCCATATTTA-TTTGAATGTTTAACCTGCAGACTTCGAGTCAGGGCAT
66 CGAGAAGTCGATATTTGCCATATTTATTTTGAATGTTTAACCTGCAGACTTCGAGTCAGGGCAT
* *
99711326 ATATGTT-AATAAGTTTATGCATATATATGCATTATATATGGCTTGATTAACTTCAATGAAGTGC
1 ATATGTTAAATAAGTTTATGCATATATAT-CATTACATA-GGCTTGATTAACTTCAATGAAGTGA
* *
99711390 TATGAGAAGTTGATATTTGCCATATTTATTTTGAATGTTTAACCTGCAG
64 TACGAGAAGTCGATATTTGCCATATTTATTTTGAATGTTTAACCTGCAG
99711439 GAGAGACTCG
Statistics
Matches: 101, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
124 21 0.21
125 7 0.07
126 1 0.01
127 5 0.05
129 47 0.47
130 20 0.20
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (129 bp):
ATATGTTAAATAAGTTTATGCATATATATCATTACATAGGCTTGATTAACTTCAATGAAGTGATA
CGAGAAGTCGATATTTGCCATATTTATTTTGAATGTTTAACCTGCAGACTTCGAGTCAGGGCAT
Found at i:99721719 original size:15 final size:15
Alignment explanation
Indices: 99721669--99721743 Score: 53
Period size: 16 Copynumber: 4.8 Consensus size: 15
99721659 TACTTTAATC
*
99721669 ATTTTAGATTTAGGTT
1 ATTTT-GATTTAGATT
* *
99721685 ATTTCGAGTTTAGATA
1 ATTTTGA-TTTAGATT
*
99721701 ATTTTGATTTAAATT
1 ATTTTGATTTAGATT
*
99721716 ATTTATAAATTTAGATT
1 ATTT-T-GATTTAGATT
*
99721733 -TTTTAATTTAG
1 ATTTTGATTTAG
99721744 GAGTCTGTCT
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
14 7 0.15
15 13 0.27
16 20 0.42
17 8 0.17
ACGTcount: A:0.32, C:0.01, G:0.12, T:0.55
Consensus pattern (15 bp):
ATTTTGATTTAGATT
Found at i:99727638 original size:15 final size:17
Alignment explanation
Indices: 99727614--99727646 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
99727604 TCCTTCTATC
99727614 TTTTCGTTTTA-ATTTT
1 TTTTCGTTTTATATTTT
99727630 TTTTC-TTTTATATTTT
1 TTTTCGTTTTATATTTT
99727646 T
1 T
99727647 CAACTTTCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.31
16 11 0.69
ACGTcount: A:0.12, C:0.06, G:0.03, T:0.79
Consensus pattern (17 bp):
TTTTCGTTTTATATTTT
Found at i:99727666 original size:21 final size:21
Alignment explanation
Indices: 99727636--99727686 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
99727626 TTTTTTTTCT
*
99727636 TTTATATTTTTCAACTT-TCCC
1 TTTATTTTTTTCAA-TTCTCCC
*
99727657 TTTATTTTTTTTCTATTCTCCC
1 TTTA-TTTTTTTCAATTCTCCC
99727679 TTTATTTT
1 TTTATTTT
99727687 CCTCCATCGC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
21 10 0.38
22 16 0.62
ACGTcount: A:0.14, C:0.20, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTATTTTTTTCAATTCTCCC
Found at i:99727668 original size:22 final size:22
Alignment explanation
Indices: 99727642--99727686 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
99727632 TTCTTTTATA
99727642 TTTTTCAACTT-TCCCTTTATTT
1 TTTTTCAA-TTCTCCCTTTATTT
*
99727664 TTTTTCTATTCTCCCTTTATTT
1 TTTTTCAATTCTCCCTTTATTT
99727686 T
1 T
99727687 CCTCCATCGC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 2 0.10
22 19 0.90
ACGTcount: A:0.11, C:0.22, G:0.00, T:0.67
Consensus pattern (22 bp):
TTTTTCAATTCTCCCTTTATTT
Found at i:99729764 original size:16 final size:16
Alignment explanation
Indices: 99729743--99729777 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
99729733 CATACACTAG
*
99729743 AAAGAGAGGTAGATAC
1 AAAGAGAGGTAAATAC
99729759 AAAGAGAGGTAAATAC
1 AAAGAGAGGTAAATAC
99729775 AAA
1 AAA
99729778 TAGTTTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.57, C:0.06, G:0.26, T:0.11
Consensus pattern (16 bp):
AAAGAGAGGTAAATAC
Found at i:99731192 original size:20 final size:21
Alignment explanation
Indices: 99731169--99731212 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
99731159 TTTATCATTT
*
99731169 AATTT-AATTTTTTCAAATAA
1 AATTTAAATTTATTCAAATAA
*
99731189 AATTTAAATTTATTCAAATTA
1 AATTTAAATTTATTCAAATAA
99731210 AAT
1 AAT
99731213 AAAAAATTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (21 bp):
AATTTAAATTTATTCAAATAA
Found at i:99731222 original size:21 final size:21
Alignment explanation
Indices: 99731180--99731222 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
99731170 ATTTAATTTT
** *
99731180 TTCAAATAAAATTTAAATTTA
1 TTCAAATAAAATAAAAAATTA
*
99731201 TTCAAATTAAATAAAAAATTA
1 TTCAAATAAAATAAAAAATTA
99731222 T
1 T
99731223 CTATATTTAG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (21 bp):
TTCAAATAAAATAAAAAATTA
Found at i:99742665 original size:34 final size:34
Alignment explanation
Indices: 99742626--99742693 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
99742616 ACAATGAATT
99742626 TTAAAACTGTTTTATACCGAAAATGAGAATTGAA
1 TTAAAACTGTTTTATACCGAAAATGAGAATTGAA
* * *
99742660 TTAAAATTGTTTTATACCGAATATGAGGATTGAA
1 TTAAAACTGTTTTATACCGAAAATGAGAATTGAA
99742694 CTCTCAGAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.41, C:0.07, G:0.16, T:0.35
Consensus pattern (34 bp):
TTAAAACTGTTTTATACCGAAAATGAGAATTGAA
Found at i:99743493 original size:32 final size:32
Alignment explanation
Indices: 99743440--99743511 Score: 92
Period size: 32 Copynumber: 2.2 Consensus size: 32
99743430 GTATTTCATT
* *
99743440 TCACAACAAGTCACGAGAAAAAGCATATTTCG
1 TCACAACAAGTCACGAGAAAAACCATATTCCG
* *
99743472 TCGCAACAAGTCACG-GAAAAAACCGTATTCCG
1 TCACAACAAGTCACGAG-AAAAACCATATTCCG
99743504 TCACAACA
1 TCACAACA
99743512 TGTAAAAAGC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
31 1 0.03
32 33 0.97
ACGTcount: A:0.42, C:0.26, G:0.15, T:0.17
Consensus pattern (32 bp):
TCACAACAAGTCACGAGAAAAACCATATTCCG
Found at i:99749990 original size:24 final size:24
Alignment explanation
Indices: 99749963--99750008 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
99749953 TATTTATATA
* *
99749963 TTTATTTACATATTATATATTTTC
1 TTTATTTACAAATGATATATTTTC
*
99749987 TTTATTTTCAAATGATATATTT
1 TTTATTTACAAATGATATATTT
99750009 AAATTATTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.61
Consensus pattern (24 bp):
TTTATTTACAAATGATATATTTTC
Found at i:99752553 original size:13 final size:14
Alignment explanation
Indices: 99752537--99752572 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
99752527 CAATCTCATA
99752537 TCTCAATTTCAA-T
1 TCTCAATTTCAATT
99752550 TCTCAA-TTCAATT
1 TCTCAATTTCAATT
99752563 TCTC-ATTTCA
1 TCTCAATTTCA
99752573 TTCCAATAGC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 15 0.71
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (14 bp):
TCTCAATTTCAATT
Found at i:99752562 original size:18 final size:19
Alignment explanation
Indices: 99752524--99752564 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
99752514 TGGTTCATGT
99752524 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
99752543 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
99752561 TTTC
1 TTTC
99752565 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:99752786 original size:23 final size:23
Alignment explanation
Indices: 99752726--99752790 Score: 89
Period size: 23 Copynumber: 2.9 Consensus size: 23
99752716 CTGATCAGAG
99752726 TACGACACATAAAGTGCCT-AAA
1 TACGACACATAAAGTGCCTGAAA
** *
99752748 -ACGACACACGAGGTGCCTGAAA
1 TACGACACATAAAGTGCCTGAAA
99752770 TACGACACATAAAGTGCCTGA
1 TACGACACATAAAGTGCCTGA
99752791 TCGATAAAGC
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
21 15 0.43
22 3 0.09
23 17 0.49
ACGTcount: A:0.40, C:0.25, G:0.20, T:0.15
Consensus pattern (23 bp):
TACGACACATAAAGTGCCTGAAA
Found at i:99753191 original size:15 final size:15
Alignment explanation
Indices: 99753173--99753210 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
99753163 ATATATATAT
*
99753173 TATAATTTCAATCAA
1 TATAAATTCAATCAA
99753188 TATAAATTCAATCAA
1 TATAAATTCAATCAA
*
99753203 AATAAATT
1 TATAAATT
99753211 TGATAAATTC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.37
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:99753359 original size:10 final size:10
Alignment explanation
Indices: 99753344--99753369 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
99753334 ACAAACCGTA
99753344 TTTTCCGAGC
1 TTTTCCGAGC
99753354 TTTTCCGAGC
1 TTTTCCGAGC
99753364 TTTTCC
1 TTTTCC
99753370 TCGTCGACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.08, C:0.31, G:0.15, T:0.46
Consensus pattern (10 bp):
TTTTCCGAGC
Found at i:99754963 original size:2 final size:2
Alignment explanation
Indices: 99754956--99754981 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
99754946 TGACACTACA
99754956 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
99754982 TCAATTGAGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:99755415 original size:16 final size:16
Alignment explanation
Indices: 99755377--99755417 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
99755367 TAATATAATA
99755377 TTTT-TTTATTTTATG
1 TTTTATTTATTTTATG
99755392 TGTTTATTTACTTTTA-G
1 T-TTTATTTA-TTTTATG
99755409 TTTTATTTA
1 TTTTATTTA
99755418 ATTATTTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
15 1 0.04
16 11 0.48
17 6 0.26
18 5 0.22
ACGTcount: A:0.17, C:0.02, G:0.07, T:0.73
Consensus pattern (16 bp):
TTTTATTTATTTTATG
Found at i:99755712 original size:28 final size:28
Alignment explanation
Indices: 99755670--99755727 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 28
99755660 AAAAAATGCC
* *
99755670 AAGTTTTGATGCTAAATTGGGCCAAAAA
1 AAGTTTCGATACTAAATTGGGCCAAAAA
*
99755698 AAGTTTCGATACTAAATTGGGTCAAAAA
1 AAGTTTCGATACTAAATTGGGCCAAAAA
99755726 AA
1 AA
99755728 ATTAGATACC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.28
Consensus pattern (28 bp):
AAGTTTCGATACTAAATTGGGCCAAAAA
Found at i:99755735 original size:27 final size:28
Alignment explanation
Indices: 99755681--99755736 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
99755671 AGTTTTGATG
* *
99755681 CTAAATTGGGCCAAAAAAAGTTTCGATA
1 CTAAATTGGGCCAAAAAAAGATTAGATA
*
99755709 CTAAATTGGGTCAAAAAAA-ATTAGATA
1 CTAAATTGGGCCAAAAAAAGATTAGATA
99755736 C
1 C
99755737 CAAGATAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 7 0.28
28 18 0.72
ACGTcount: A:0.46, C:0.12, G:0.16, T:0.25
Consensus pattern (28 bp):
CTAAATTGGGCCAAAAAAAGATTAGATA
Found at i:99757102 original size:43 final size:42
Alignment explanation
Indices: 99757054--99757136 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
99757044 ATTTAAAATT
*
99757054 AAATGAAAGAAATAAAAAT-TATTATCCAAACTCAGCTTAAGTA
1 AAATG-AAGAAATAAAAATCT-TTATCCAAACTCAACTTAAGTA
* *
99757097 AAATGAATACATAAAAATCTTTATCCAAACTCAACTTAAG
1 AAATGAAGAAATAAAAATCTTTATCCAAACTCAACTTAAG
99757137 GTATAGTAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
42 30 0.83
43 6 0.17
ACGTcount: A:0.52, C:0.14, G:0.07, T:0.27
Consensus pattern (42 bp):
AAATGAAGAAATAAAAATCTTTATCCAAACTCAACTTAAGTA
Found at i:99764563 original size:12 final size:14
Alignment explanation
Indices: 99764541--99764572 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
99764531 TAATCCAATT
99764541 TTTTTTCTTTTT-C
1 TTTTTTCTTTTTCC
99764554 TTTTTT-TTTTTCC
1 TTTTTTCTTTTTCC
99764567 TTTTTT
1 TTTTTT
99764573 GCTTGTGTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 5 0.28
13 13 0.72
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (14 bp):
TTTTTTCTTTTTCC
Found at i:99765123 original size:27 final size:27
Alignment explanation
Indices: 99765085--99765140 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
99765075 TAGTGTCTCT
99765085 TTAAACCATCTTTACAAGGACTCGCAC
1 TTAAACCATCTTTACAAGGACTCGCAC
99765112 TTAAACCATCTTTACAAGGACTCGCAC
1 TTAAACCATCTTTACAAGGACTCGCAC
99765139 TT
1 TT
99765141 TCAACAGAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.32, C:0.29, G:0.11, T:0.29
Consensus pattern (27 bp):
TTAAACCATCTTTACAAGGACTCGCAC
Found at i:99766097 original size:35 final size:35
Alignment explanation
Indices: 99766046--99766115 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
99766036 TAATTAGGCT
99766046 TTTTTTACCATAATGTTGAAAGTATTATATATCTA
1 TTTTTTACCATAATGTTGAAAGTATTATATATCTA
*
99766081 TTTTTTACCATGATGTTGAAAGTATTATATATCTA
1 TTTTTTACCATAATGTTGAAAGTATTATATATCTA
99766116 CACAAAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.33, C:0.09, G:0.10, T:0.49
Consensus pattern (35 bp):
TTTTTTACCATAATGTTGAAAGTATTATATATCTA
Found at i:99773893 original size:15 final size:16
Alignment explanation
Indices: 99773861--99773892 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
99773851 TTCATAAAAA
*
99773861 TAAAAATTATTATTTT
1 TAAAAATTAATATTTT
99773877 TAAAAATTAATATTTT
1 TAAAAATTAATATTTT
99773893 AGTAAATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TAAAAATTAATATTTT
Found at i:99775740 original size:28 final size:27
Alignment explanation
Indices: 99775709--99775776 Score: 75
Period size: 28 Copynumber: 2.5 Consensus size: 27
99775699 CTCTCAAAAT
* *
99775709 AAATTTAAAAAATAATTTTTAAATTTCA
1 AAATTTTAAAAATAATTTTGAAATTT-A
*
99775737 AAATATTTATAAA-AATTTTGAAATTTA
1 AAAT-TTTAAAAATAATTTTGAAATTTA
*
99775764 TAATTTTAAAAAT
1 AAATTTTAAAAAT
99775777 TTATATATTT
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
26 7 0.21
27 4 0.12
28 16 0.48
29 6 0.18
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (27 bp):
AAATTTTAAAAATAATTTTGAAATTTA
Found at i:99779999 original size:31 final size:31
Alignment explanation
Indices: 99779934--99779999 Score: 80
Period size: 31 Copynumber: 2.1 Consensus size: 31
99779924 CAAAACTTCT
* * *
99779934 AAAAAATTTAATTAGACCCCTAATTTTTTGG
1 AAAAAATATAATTAAACCCCTAAGTTTTTGG
*
99779965 AAAAAATATCATTAAACCCCTAAAGTTTTT-G
1 AAAAAATATAATTAAACCCCT-AAGTTTTTGG
99779996 AAAA
1 AAAA
99780000 TTTCCCAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
31 23 0.77
32 7 0.23
ACGTcount: A:0.45, C:0.14, G:0.08, T:0.33
Consensus pattern (31 bp):
AAAAAATATAATTAAACCCCTAAGTTTTTGG
Found at i:99795300 original size:2 final size:2
Alignment explanation
Indices: 99795295--99795322 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
99795285 AGACACATAT
99795295 TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG
99795323 GTTGTTGCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:99799132 original size:14 final size:14
Alignment explanation
Indices: 99799091--99799140 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
99799081 AAATTTTCTT
* *
99799091 TAAAATATTAAAAA
1 TAAAAAATTAATAA
*
99799105 TAAAAAATT-GTAA
1 TAAAAAATTAATAA
99799118 TAAAAAATTAATAA
1 TAAAAAATTAATAA
99799132 TAAGAAAAT
1 TAA-AAAAT
99799141 AGTACGTACC
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
13 11 0.37
14 14 0.47
15 5 0.17
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (14 bp):
TAAAAAATTAATAA
Found at i:99799268 original size:28 final size:29
Alignment explanation
Indices: 99799211--99799278 Score: 93
Period size: 29 Copynumber: 2.4 Consensus size: 29
99799201 AAGTCTTTCT
* ***
99799211 AATTTGGTACTTAAATTTTTTCTTTGTCC
1 AATTTGGTACTTAAACTTTTTCAGGGTCC
99799240 AATTTGGTACTTAAACTTTTT-AGGGTCC
1 AATTTGGTACTTAAACTTTTTCAGGGTCC
99799268 AATTTGGTACT
1 AATTTGGTACT
99799279 GAACTTAACT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
28 15 0.43
29 20 0.57
ACGTcount: A:0.24, C:0.13, G:0.15, T:0.49
Consensus pattern (29 bp):
AATTTGGTACTTAAACTTTTTCAGGGTCC
Found at i:99811543 original size:44 final size:44
Alignment explanation
Indices: 99811460--99811582 Score: 140
Period size: 44 Copynumber: 2.7 Consensus size: 44
99811450 CAGAAATGAG
* * *
99811460 CCATGTAAGTCCATATTAGAAATATGGCTTTGGAGACAGGATTGAT
1 CCATGTAAGTCCATATTA-AAATATGGCATTGGAGACAGGAAT-AA
*
99811506 CCATGTAAGTCCATATT-ATATATGGCATTGGAGACAGGAATAA
1 CCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAATAA
* * *
99811549 CTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 C-CATGTAAGTCCATATTAAA-ATATGGCATTGG
99811583 CAGGATATTG
Statistics
Matches: 66, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
43 2 0.03
44 35 0.53
45 1 0.02
46 28 0.42
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.28
Consensus pattern (44 bp):
CCATGTAAGTCCATATTAAAATATGGCATTGGAGACAGGAATAA
Found at i:99813523 original size:126 final size:126
Alignment explanation
Indices: 99813363--99813606 Score: 427
Period size: 126 Copynumber: 1.9 Consensus size: 126
99813353 GTTTTAGCCT
*
99813363 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGTGAAACCCAGTACGTTAAGGCACGATT
1 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAAGGCACGATT
* *
99813428 -TTTCGAATTCTTTAAATACCGAACATTGCCTTTATTTTGAAAATTTTTGAGAGTGAACTGG
66 CTTT-GAATTCTTTAAATACAGAACATTGCCTTTATTTTGAAAAATTTTGAGAGTGAACTGG
* *
99813489 TAAGAGGATATTCGAATATTCAAGACAAACAAAGAAAGCGAAACCCAGTACGTTAGGGCACGATT
1 TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAAGGCACGATT
99813554 CTTTGAATTCTTTAAATACAGAACATTGCCTTTATTTTGAAAAATTTTGAGAG
66 CTTTGAATTCTTTAAATACAGAACATTGCCTTTATTTTGAAAAATTTTGAGAG
99813607 AAGATCAATG
Statistics
Matches: 112, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
126 109 0.97
127 3 0.03
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (126 bp):
TAAGAGGATATTCGAATATTCAAAACAAACAAAGAAAGCGAAACCCAGTACGTTAAGGCACGATT
CTTTGAATTCTTTAAATACAGAACATTGCCTTTATTTTGAAAAATTTTGAGAGTGAACTGG
Found at i:99813739 original size:13 final size:12
Alignment explanation
Indices: 99813707--99813756 Score: 52
Period size: 13 Copynumber: 4.2 Consensus size: 12
99813697 AACCATATAT
99813707 AAATAA-TAA-A
1 AAATAATTAATA
99813717 AAATAA-TAATA
1 AAATAATTAATA
*
99813728 ATAGTAATTAATA
1 A-AATAATTAATA
99813741 GAAATAATTAATA
1 -AAATAATTAATA
99813754 AAA
1 AAA
99813757 CAACAGTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
10 9 0.26
11 2 0.06
12 7 0.21
13 15 0.44
14 1 0.03
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (12 bp):
AAATAATTAATA
Found at i:99813854 original size:21 final size:21
Alignment explanation
Indices: 99813809--99813870 Score: 61
Period size: 21 Copynumber: 2.9 Consensus size: 21
99813799 AATAGAATTA
*
99813809 ATAATAACATTAAAAACATGATG
1 ATAATAACA--AAAAATATGATG
*
99813832 ATAATAACAAAAAATATGTTG
1 ATAATAACAAAAAATATGATG
* **
99813853 ATGATAACATTAAATATG
1 ATAATAACAAAAAATATG
99813871 GGGGATAATA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
21 25 0.74
23 9 0.26
ACGTcount: A:0.55, C:0.06, G:0.10, T:0.29
Consensus pattern (21 bp):
ATAATAACAAAAAATATGATG
Found at i:99814488 original size:18 final size:18
Alignment explanation
Indices: 99814465--99814538 Score: 71
Period size: 18 Copynumber: 4.1 Consensus size: 18
99814455 ATAACAAGTA
*
99814465 GGGTGATGGAGTTAGTGG
1 GGGTGATGGAGGTAGTGG
99814483 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
* * *
99814501 ATGGT-TTAGTAGGGT-GTGG
1 -GGGTGAT-GGA-GGTAGTGG
99814520 GGGTGATGGAGGTAGTGG
1 GGGTGATGGAGGTAGTGG
99814538 G
1 G
99814539 TGGTTTAGTA
Statistics
Matches: 44, Mismatches: 7, Indels: 10
0.72 0.11 0.16
Matches are distributed among these distances:
17 3 0.07
18 28 0.64
19 10 0.23
20 3 0.07
ACGTcount: A:0.16, C:0.00, G:0.57, T:0.27
Consensus pattern (18 bp):
GGGTGATGGAGGTAGTGG
Found at i:99814529 original size:37 final size:37
Alignment explanation
Indices: 99814479--99814553 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
99814469 GATGGAGTTA
99814479 GTGGGGGTGATGGAGGTAGTGGATGGTTTAGTAGGGT
1 GTGGGGGTGATGGAGGTAGTGGATGGTTTAGTAGGGT
*
99814516 GTGGGGGTGATGGAGGTAGTGGGTGGTTTAGTAGGGT
1 GTGGGGGTGATGGAGGTAGTGGATGGTTTAGTAGGGT
99814553 G
1 G
99814554 ATGGAGTTAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.15, C:0.00, G:0.56, T:0.29
Consensus pattern (37 bp):
GTGGGGGTGATGGAGGTAGTGGATGGTTTAGTAGGGT
Found at i:99814553 original size:29 final size:29
Alignment explanation
Indices: 99814520--99814582 Score: 92
Period size: 29 Copynumber: 2.2 Consensus size: 29
99814510 TAGGGTGTGG
99814520 GGGTGATGGAGGTAGTGGGT-GGTTTAGTA
1 GGGTGATGGAGGTAGT-GGTCGGTTTAGTA
* *
99814549 GGGTGATGGAGTTAGTGGTCGGTTTAGTG
1 GGGTGATGGAGGTAGTGGTCGGTTTAGTA
99814578 GGGTG
1 GGGTG
99814583 TTTAATTTGG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
28 3 0.10
29 28 0.90
ACGTcount: A:0.14, C:0.02, G:0.52, T:0.32
Consensus pattern (29 bp):
GGGTGATGGAGGTAGTGGTCGGTTTAGTA
Found at i:99823122 original size:21 final size:21
Alignment explanation
Indices: 99823099--99823228 Score: 127
Period size: 21 Copynumber: 6.2 Consensus size: 21
99823089 TCTCCCACTT
* *
99823099 CATCCCCTGGTTACAGCCC-A
1 CATCTCCTGGCTACAGCCCTA
* *
99823119 TCATCTCCTGGCTACAGTCCTT
1 -CATCTCCTGGCTACAGCCCTA
*
99823141 CATCTCCTGGCTACAGTCCTA
1 CATCTCCTGGCTACAGCCCTA
* * *
99823162 CCTCGCCTGGTTACAGCCCTA
1 CATCTCCTGGCTACAGCCCTA
*
99823183 CATCTCCTGGCTACAGTCCTA
1 CATCTCCTGGCTACAGCCCTA
* * * *
99823204 CCTCGCCTGGTTACAGCCCCA
1 CATCTCCTGGCTACAGCCCTA
99823225 CATC
1 CATC
99823229 ACCTACTTAC
Statistics
Matches: 89, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
21 89 1.00
ACGTcount: A:0.17, C:0.42, G:0.15, T:0.26
Consensus pattern (21 bp):
CATCTCCTGGCTACAGCCCTA
Found at i:99823228 original size:42 final size:42
Alignment explanation
Indices: 99823141--99823264 Score: 169
Period size: 42 Copynumber: 3.0 Consensus size: 42
99823131 TACAGTCCTT
*
99823141 CATCTCCTGGCTACAGTCCTACCTCGCCTGGTTACAGCCCTA
1 CATCTCCTGGCTACAGTCCTACCTCGCCTGGTTACAGCCCCA
99823183 CATCTCCTGGCTACAGTCCTACCTCGCCTGGTTACAGCCCCA
1 CATCTCCTGGCTACAGTCCTACCTCGCCTGGTTACAGCCCCA
* * ** * *
99823225 CATCACCT-ACTTACAGTCCTAGTTCACCAGGTTACAGCCC
1 CATCTCCTGGC-TACAGTCCTACCTCGCCTGGTTACAGCCC
99823265 AACAAGTCCA
Statistics
Matches: 74, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
41 1 0.01
42 73 0.99
ACGTcount: A:0.19, C:0.40, G:0.15, T:0.25
Consensus pattern (42 bp):
CATCTCCTGGCTACAGTCCTACCTCGCCTGGTTACAGCCCCA
Found at i:99823239 original size:63 final size:64
Alignment explanation
Indices: 99823109--99823245 Score: 161
Period size: 63 Copynumber: 2.2 Consensus size: 64
99823099 CATCCCCTGG
* * * * * * **
99823109 TTACAGCCC-ATCATCTCCTGGCTACAGTCCTTCATCTCCTGGCTACAGTCCTACCTCGCCTGG
1 TTACAGCCCTATCATCTCCTGGCTACAGTCCTACATCGCCTGGCTACAGCCCCACATCACCTAC
* *
99823172 TTACAGCCCTA-CATCTCCTGGCTACAGTCCTACCTCGCCTGGTTACAGCCCCACATCACCTAC
1 TTACAGCCCTATCATCTCCTGGCTACAGTCCTACATCGCCTGGCTACAGCCCCACATCACCTAC
*
99823235 TTACAGTCCTA
1 TTACAGCCCTA
99823246 GTTCACCAGG
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
63 61 0.98
64 1 0.02
ACGTcount: A:0.19, C:0.40, G:0.14, T:0.27
Consensus pattern (64 bp):
TTACAGCCCTATCATCTCCTGGCTACAGTCCTACATCGCCTGGCTACAGCCCCACATCACCTAC
Found at i:99823338 original size:21 final size:21
Alignment explanation
Indices: 99823308--99823441 Score: 99
Period size: 21 Copynumber: 6.4 Consensus size: 21
99823298 TTATTCTCCA
*
99823308 ACCTCACCAAGCTATAGCCCT
1 ACCTCACCAAGCTACAGCCCT
*
99823329 ACCTCTCCAAGCTACAGCCCT
1 ACCTCACCAAGCTACAGCCCT
* * * *
99823350 ACGTCTCCAAGTTACAGTCCT
1 ACCTCACCAAGCTACAGCCCT
* * *
99823371 ACTTCACCAAGTTATAGTCCC-
1 ACCTCACCAAGCTACAG-CCCT
* * * * * *
99823392 ACATCTCCCAGCTATAGTCCA
1 ACCTCACCAAGCTACAGCCCT
*
99823413 ACTTCACCAAGCTACAGCCCT
1 ACCTCACCAAGCTACAGCCCT
*
99823434 ACTTCACC
1 ACCTCACC
99823442 GGCATATAGC
Statistics
Matches: 91, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
20 2 0.02
21 87 0.96
22 2 0.02
ACGTcount: A:0.27, C:0.40, G:0.10, T:0.23
Consensus pattern (21 bp):
ACCTCACCAAGCTACAGCCCT
Found at i:99823378 original size:63 final size:63
Alignment explanation
Indices: 99823311--99823441 Score: 156
Period size: 63 Copynumber: 2.1 Consensus size: 63
99823301 TTCTCCAACC
* * * * *
99823311 TCACCAAGCTATAG-CCCTACCTCTCCAAGCTACAGCCCTACGTCTCCAAGTTACAGTCCTACT
1 TCACCAAGCTATAGTCCC-ACATCTCCAAGCTACAGCCCAACGTCACCAAGCTACAGCCCTACT
* * * * *
99823374 TCACCAAGTTATAGTCCCACATCTCCCAGCTATAGTCCAACTTCACCAAGCTACAGCCCTACT
1 TCACCAAGCTATAGTCCCACATCTCCAAGCTACAGCCCAACGTCACCAAGCTACAGCCCTACT
99823437 TCACC
1 TCACC
99823442 GGCATATAGC
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
63 54 0.95
64 3 0.05
ACGTcount: A:0.27, C:0.40, G:0.10, T:0.24
Consensus pattern (63 bp):
TCACCAAGCTATAGTCCCACATCTCCAAGCTACAGCCCAACGTCACCAAGCTACAGCCCTACT
Found at i:99823381 original size:42 final size:42
Alignment explanation
Indices: 99823314--99823435 Score: 129
Period size: 42 Copynumber: 2.9 Consensus size: 42
99823304 TCCAACCTCA
* * * * *
99823314 CCAAGCTATAGCCCTACCTCTCCAAGCTACAGCCCTACGTCT
1 CCAAGCTACAGTCCTACTTCACCAAGCTACAGCCCTACATCT
* * *
99823356 CCAAGTTACAGTCCTACTTCACCAAGTTATAGTCCC-ACATCT
1 CCAAGCTACAGTCCTACTTCACCAAGCTACAG-CCCTACATCT
* * *
99823398 CCCAGCTATAGTCCAACTTCACCAAGCTACAGCCCTAC
1 CCAAGCTACAGTCCTACTTCACCAAGCTACAGCCCTAC
99823436 TTCACCGGCA
Statistics
Matches: 64, Mismatches: 14, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
41 3 0.05
42 58 0.91
43 3 0.05
ACGTcount: A:0.27, C:0.39, G:0.11, T:0.23
Consensus pattern (42 bp):
CCAAGCTACAGTCCTACTTCACCAAGCTACAGCCCTACATCT
Found at i:99823452 original size:21 final size:21
Alignment explanation
Indices: 99823410--99823498 Score: 90
Period size: 21 Copynumber: 4.2 Consensus size: 21
99823400 CAGCTATAGT
*
99823410 CCAACTTCACCAAGC-TACAGC
1 CCAACTTCACC-GGCATACAGC
* *
99823431 CCTACTTCACCGGCATATAGC
1 CCAACTTCACCGGCATACAGC
*
99823452 CCAACTTCACCTGCATACAGC
1 CCAACTTCACCGGCATACAGC
* * **
99823473 CCCACTTCTCCATCATACAGC
1 CCAACTTCACCGGCATACAGC
99823494 CCAAC
1 CCAAC
99823499 ATCGCCATCA
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
20 2 0.04
21 54 0.96
ACGTcount: A:0.28, C:0.44, G:0.09, T:0.19
Consensus pattern (21 bp):
CCAACTTCACCGGCATACAGC
Found at i:99823495 original size:42 final size:42
Alignment explanation
Indices: 99823410--99823609 Score: 145
Period size: 42 Copynumber: 4.8 Consensus size: 42
99823400 CAGCTATAGT
* * * ** *
99823410 CCAACTTCACCAAGC-TACAGCCCTACTTCACCGGCATATAGC
1 CCAACTTCACC-TGCATACAGCCCCACTTCTCCATCATACAGC
99823452 CCAACTTCACCTGCATACAGCCCCACTTCTCCATCATACAGC
1 CCAACTTCACCTGCATACAGCCCCACTTCTCCATCATACAGC
* * * * * * *
99823494 CCAACATCGCCAT-CATACAGTCCGACATCTCCTTCTTACAGC
1 CCAACTTCACC-TGCATACAGCCCCACTTCTCCATCATACAGC
* * * * *
99823536 CCAACCTCACCCT-CCTATAGCCCTACATCTCCATCATACAGC
1 CCAACTTCA-CCTGCATACAGCCCCACTTCTCCATCATACAGC
* * * * *
99823578 CCTACGTCCCCAGCATATAGCCCCACTTCTCC
1 CCAACTTCACCTGCATACAGCCCCACTTCTCC
99823610 CGGGTACAGT
Statistics
Matches: 126, Mismatches: 28, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
41 4 0.03
42 119 0.94
43 3 0.02
ACGTcount: A:0.26, C:0.45, G:0.09, T:0.21
Consensus pattern (42 bp):
CCAACTTCACCTGCATACAGCCCCACTTCTCCATCATACAGC
Found at i:99823582 original size:21 final size:21
Alignment explanation
Indices: 99823465--99823579 Score: 113
Period size: 21 Copynumber: 5.5 Consensus size: 21
99823455 ACTTCACCTG
* *
99823465 CATACAGCCCCACTTCTCCAT
1 CATACAGCCCAACATCTCCAT
*
99823486 CATACAGCCCAACATCGCCAT
1 CATACAGCCCAACATCTCCAT
* * *
99823507 CATACAGTCCGACATCTCCTT
1 CATACAGCCCAACATCTCCAT
* * * *
99823528 CTTACAGCCCAACCTCACCCT
1 CATACAGCCCAACATCTCCAT
* * *
99823549 CCTATAGCCCTACATCTCCAT
1 CATACAGCCCAACATCTCCAT
99823570 CATACAGCCC
1 CATACAGCCC
99823580 TACGTCCCCA
Statistics
Matches: 73, Mismatches: 21, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 73 1.00
ACGTcount: A:0.26, C:0.45, G:0.07, T:0.22
Consensus pattern (21 bp):
CATACAGCCCAACATCTCCAT
Found at i:99823594 original size:21 final size:21
Alignment explanation
Indices: 99823425--99823600 Score: 66
Period size: 21 Copynumber: 8.4 Consensus size: 21
99823415 TTCACCAAGC
* * *
99823425 TACAGCCCTACTTCACCGGCA
1 TACAGCCCTACATCCCCAGCA
* * * * *
99823446 TATAGCCCAACTTCACCTGCA
1 TACAGCCCTACATCCCCAGCA
* * * *
99823467 TACAGCCCCACTTCTCCATCA
1 TACAGCCCTACATCCCCAGCA
* * *
99823488 TACAGCCCAACATCGCCATCA
1 TACAGCCCTACATCCCCAGCA
* * * ** *
99823509 TACAGTCCGACATCTCCTTCT
1 TACAGCCCTACATCCCCAGCA
* * * *
99823530 TACAGCCCAACCTCACCC-TCC
1 TACAGCCCTACATC-CCCAGCA
* * *
99823551 TATAGCCCTACATCTCCATCA
1 TACAGCCCTACATCCCCAGCA
*
99823572 TACAGCCCTACGTCCCCAGCA
1 TACAGCCCTACATCCCCAGCA
*
99823593 TATAGCCC
1 TACAGCCC
99823601 CACTTCTCCC
Statistics
Matches: 122, Mismatches: 31, Indels: 4
0.78 0.20 0.03
Matches are distributed among these distances:
20 2 0.02
21 118 0.97
22 2 0.02
ACGTcount: A:0.26, C:0.44, G:0.09, T:0.22
Consensus pattern (21 bp):
TACAGCCCTACATCCCCAGCA
Found at i:99829488 original size:97 final size:97
Alignment explanation
Indices: 99829370--99829560 Score: 303
Period size: 97 Copynumber: 2.0 Consensus size: 97
99829360 GAAAATGTCT
* * *
99829370 ATAAAATAATTTATTGTATTTAGTAGAGATTTGAATCTTAAATGGCA-AATTTTTAATAGAAAAA
1 ATAAAATAATTTATTGTATTTAATAAAGACTTGAATCTTAAATGG-ATAATTTTTAATAGAAAAA
99829434 TAAGTGTTTGATAGGGATTGAGACATATTTTCC
65 TAAGTGTTTGATAGGGATTGAGACATATTTTCC
* * *
99829467 ATAAAATAATTTATTGTATTTAATAAAGGCTTGAATCTTAAATGGATATTTTTTAATGGAAAAAT
1 ATAAAATAATTTATTGTATTTAATAAAGACTTGAATCTTAAATGGATAATTTTTAATAGAAAAAT
*
99829532 TAGTGTTTGATAGGGATTGAGACATATTT
66 AAGTGTTTGATAGGGATTGAGACATATTT
99829561 GGATATGTAT
Statistics
Matches: 86, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
96 1 0.01
97 85 0.99
ACGTcount: A:0.39, C:0.04, G:0.17, T:0.40
Consensus pattern (97 bp):
ATAAAATAATTTATTGTATTTAATAAAGACTTGAATCTTAAATGGATAATTTTTAATAGAAAAAT
AAGTGTTTGATAGGGATTGAGACATATTTTCC
Found at i:99835083 original size:4 final size:4
Alignment explanation
Indices: 99835074--99835108 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
99835064 TGTGCGTCGT
99835074 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGT
99835109 CTGTGCAAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.51
Consensus pattern (4 bp):
TGTA
Found at i:99835147 original size:20 final size:20
Alignment explanation
Indices: 99835105--99835149 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
99835095 GTATGTATGT
* *
99835105 ATGTCTGTGCAAGTGTGTAC
1 ATGTGTGTGCAAGTGTGCAC
99835125 ATGTGTGTG-AAGTGTGCATC
1 ATGTGTGTGCAAGTGTGCA-C
99835145 ATGTG
1 ATGTG
99835150 GCTAGTTCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.20, C:0.11, G:0.33, T:0.36
Consensus pattern (20 bp):
ATGTGTGTGCAAGTGTGCAC
Found at i:99835325 original size:13 final size:13
Alignment explanation
Indices: 99835309--99835334 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
99835299 TATTTTAGTT
99835309 CAACATTTAATAA
1 CAACATTTAATAA
99835322 CAACATTTAATAA
1 CAACATTTAATAA
99835335 TAATTTTATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
CAACATTTAATAA
Found at i:99839415 original size:39 final size:39
Alignment explanation
Indices: 99839371--99839448 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
99839361 ATCATTACTC
99839371 ATTAATACAACATCAATATTATTTGATTTTAAATTTAGG
1 ATTAATACAACATCAATATTATTTGATTTTAAATTTAGG
99839410 ATTAATACAACATCAATATTATTTGATTTTAAATTTAGG
1 ATTAATACAACATCAATATTATTTGATTTTAAATTTAGG
99839449 GCAATGCCTA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.44
Consensus pattern (39 bp):
ATTAATACAACATCAATATTATTTGATTTTAAATTTAGG
Found at i:99844699 original size:61 final size:61
Alignment explanation
Indices: 99844625--99844746 Score: 217
Period size: 61 Copynumber: 2.0 Consensus size: 61
99844615 TTTGAACCCC
** *
99844625 TATAACTTATAGGGGAGTTTGGTACCACTTAATTTAGCTTAGATCAACTTGATCAAGTGTT
1 TATAACTTATAGGGGAGCATGGTACCACTTAATTTAGCTTAGATCAAATTGATCAAGTGTT
99844686 TATAACTTATAGGGGAGCATGGTACCACTTAATTTAGCTTAGATCAAATTGATCAAGTGTT
1 TATAACTTATAGGGGAGCATGGTACCACTTAATTTAGCTTAGATCAAATTGATCAAGTGTT
99844747 CATTGTTAAT
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 58 1.00
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.36
Consensus pattern (61 bp):
TATAACTTATAGGGGAGCATGGTACCACTTAATTTAGCTTAGATCAAATTGATCAAGTGTT
Found at i:99847937 original size:15 final size:15
Alignment explanation
Indices: 99847917--99847946 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
99847907 CTTCCATTCA
99847917 ATACTCAGTAGAGTT
1 ATACTCAGTAGAGTT
99847932 ATACTCAGTAGAGTT
1 ATACTCAGTAGAGTT
99847947 GAAAAACGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.33
Consensus pattern (15 bp):
ATACTCAGTAGAGTT
Found at i:99848862 original size:17 final size:19
Alignment explanation
Indices: 99848820--99848862 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 19
99848810 TTTCGAATTT
99848820 ATTTATTTATGTTGCTTTG
1 ATTTATTTATGTTGCTTTG
* *
99848839 CTATATTTAT-TT-CTTTG
1 ATTTATTTATGTTGCTTTG
99848856 ATTTATT
1 ATTTATT
99848863 ATCAATGACG
Statistics
Matches: 20, Mismatches: 4, Indels: 2
0.77 0.15 0.08
Matches are distributed among these distances:
17 10 0.50
18 2 0.10
19 8 0.40
ACGTcount: A:0.19, C:0.07, G:0.09, T:0.65
Consensus pattern (19 bp):
ATTTATTTATGTTGCTTTG
Found at i:99851975 original size:29 final size:30
Alignment explanation
Indices: 99851943--99851999 Score: 98
Period size: 29 Copynumber: 1.9 Consensus size: 30
99851933 TCGATTTAAT
*
99851943 GTGCAATTGTACACATG-AACTCTAATTTA
1 GTGCAATTATACACATGAAACTCTAATTTA
99851972 GTGCAATTATACACATGAAACTCTAATT
1 GTGCAATTATACACATGAAACTCTAATT
99852000 GTGGTTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (30 bp):
GTGCAATTATACACATGAAACTCTAATTTA
Found at i:99854384 original size:31 final size:31
Alignment explanation
Indices: 99854349--99854414 Score: 82
Period size: 31 Copynumber: 2.1 Consensus size: 31
99854339 AAATAACTAT
* *
99854349 TTTATTT-TTTATTTTAATATATAAAAAT-TAA
1 TTTATTTATTT-TTTAAATA-AAAAAAATATAA
99854380 TTTATTTATTTTTTAAATAAAAAAAATATAA
1 TTTATTTATTTTTTAAATAAAAAAAATATAA
99854411 TTTA
1 TTTA
99854415 ACTGTTAGTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 7 0.23
31 21 0.68
32 3 0.10
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (31 bp):
TTTATTTATTTTTTAAATAAAAAAAATATAA
Found at i:99854678 original size:31 final size:33
Alignment explanation
Indices: 99854627--99854688 Score: 92
Period size: 31 Copynumber: 1.9 Consensus size: 33
99854617 ATTTCAAGCC
* *
99854627 CTTTAACTTTTTGTATATTTTAGAATTTAATCT
1 CTTTAACTTTTTGTATATTTTAAAATATAATCT
99854660 CTTT-ACTTTTT-TATATTTTAAAATATAAT
1 CTTTAACTTTTTGTATATTTTAAAATATAAT
99854689 TTTAATTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 16 0.59
32 7 0.26
33 4 0.15
ACGTcount: A:0.31, C:0.08, G:0.03, T:0.58
Consensus pattern (33 bp):
CTTTAACTTTTTGTATATTTTAAAATATAATCT
Found at i:99871075 original size:48 final size:48
Alignment explanation
Indices: 99871004--99871099 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
99870994 TTGATGCCAA
99871004 CAGAGAGATATGTAAATAGTAAAGCATATGATATCGTATATCGTATAT
1 CAGAGAGATATGTAAATAGTAAAGCATATGATATCGTATATCGTATAT
99871052 CAGAGAGATATGTAAATAGTAAAGCATATGATATCGTATATCGTATAT
1 CAGAGAGATATGTAAATAGTAAAGCATATGATATCGTATATCGTATAT
99871100 TTTTTTTTTG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.31
Consensus pattern (48 bp):
CAGAGAGATATGTAAATAGTAAAGCATATGATATCGTATATCGTATAT
Found at i:99871255 original size:28 final size:28
Alignment explanation
Indices: 99871220--99871275 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
99871210 TAAAAATGAG
99871220 TAAATTAATCTTTTAAGTAATTTAAAAT
1 TAAATTAATCTTTTAAGTAATTTAAAAT
99871248 TAAATTAATCTTTTAAGTAATTTAAAAT
1 TAAATTAATCTTTTAAGTAATTTAAAAT
99871276 AATTTTTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (28 bp):
TAAATTAATCTTTTAAGTAATTTAAAAT
Found at i:99871293 original size:19 final size:19
Alignment explanation
Indices: 99871243--99871298 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 19
99871233 TAAGTAATTT
*
99871243 AAAATTAAATTAATCTTTTA
1 AAAATTAAAATAAT-TTTTA
*
99871263 AGTAATTTAAAATAATTTTTA
1 A--AAATTAAAATAATTTTTA
99871284 AAAATTAAAATAATT
1 AAAATTAAAATAATT
99871299 ATAAATAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
19 13 0.42
20 1 0.03
21 6 0.19
22 11 0.35
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (19 bp):
AAAATTAAAATAATTTTTA
Found at i:99871308 original size:19 final size:19
Alignment explanation
Indices: 99871269--99871308 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
99871259 TTTAAGTAAT
*
99871269 TTAAAATAATTTTTAAAAA
1 TTAAAATAATTTATAAAAA
99871288 TTAAAATAA-TTATAAATAA
1 TTAAAATAATTTATAAA-AA
99871307 TT
1 TT
99871309 TTTAAATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
TTAAAATAATTTATAAAAA
Found at i:99873148 original size:19 final size:19
Alignment explanation
Indices: 99873124--99873162 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
99873114 AAGGTATTGG
99873124 ACATTGTTTTTTACTGGAA
1 ACATTGTTTTTTACTGGAA
99873143 ACATTGTTTTTTACTGGAA
1 ACATTGTTTTTTACTGGAA
99873162 A
1 A
99873163 TCAGGCTGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.10, G:0.15, T:0.46
Consensus pattern (19 bp):
ACATTGTTTTTTACTGGAA
Found at i:99879488 original size:30 final size:30
Alignment explanation
Indices: 99879452--99879509 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
99879442 ATTTTGAGGA
**
99879452 TAAAATGGGATGAAATTAATAAATTAAGGG
1 TAAAATGACATGAAATTAATAAATTAAGGG
* *
99879482 TAAAATGACATGAGATTAATAATTTAAG
1 TAAAATGACATGAAATTAATAAATTAAG
99879510 TATAGTTTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.50, C:0.02, G:0.19, T:0.29
Consensus pattern (30 bp):
TAAAATGACATGAAATTAATAAATTAAGGG
Found at i:99880321 original size:18 final size:18
Alignment explanation
Indices: 99880298--99880337 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
99880288 TCGTTGAGAA
*
99880298 AATTATATTTTCA-TAATT
1 AATTATAATTT-ATTAATT
99880316 AATTATAATTTATTAATT
1 AATTATAATTTATTAATT
99880334 AATT
1 AATT
99880338 TTTTTATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 1 0.05
18 19 0.95
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (18 bp):
AATTATAATTTATTAATT
Found at i:99895354 original size:14 final size:14
Alignment explanation
Indices: 99895335--99895368 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
99895325 GTGTCGTTTC
99895335 ATTATTATATTGTT
1 ATTATTATATTGTT
* *
99895349 ATTATTTTGTTGTT
1 ATTATTATATTGTT
99895363 ATTATT
1 ATTATT
99895369 TAGATATTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.68
Consensus pattern (14 bp):
ATTATTATATTGTT
Found at i:99895575 original size:12 final size:13
Alignment explanation
Indices: 99895546--99895578 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
99895536 TAAATTTTTT
99895546 ATATAAAAATAATA
1 ATATAAAAAT-ATA
99895560 ATATAAAAAT-TA
1 ATATAAAAATATA
99895572 ATATAAA
1 ATATAAA
99895579 CGGGTCGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 9 0.47
14 10 0.53
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
ATATAAAAATATA
Found at i:99896572 original size:9 final size:9
Alignment explanation
Indices: 99896558--99896584 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
99896548 GAAAATTATA
99896558 TATTATTGT
1 TATTATTGT
99896567 TATTATTGT
1 TATTATTGT
99896576 TATTATTGT
1 TATTATTGT
99896585 AGGAATGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.11, T:0.67
Consensus pattern (9 bp):
TATTATTGT
Found at i:99900370 original size:9 final size:9
Alignment explanation
Indices: 99900354--99900396 Score: 68
Period size: 9 Copynumber: 4.8 Consensus size: 9
99900344 GGTATTTTTC
99900354 GGTAATTCG
1 GGTAATTCG
*
99900363 GTTAATTCG
1 GGTAATTCG
99900372 GGTAATTCG
1 GGTAATTCG
*
99900381 GGTAATTCA
1 GGTAATTCG
99900390 GGTAATT
1 GGTAATT
99900397 TTTAACCAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.26, C:0.09, G:0.28, T:0.37
Consensus pattern (9 bp):
GGTAATTCG
Found at i:99900574 original size:12 final size:12
Alignment explanation
Indices: 99900557--99900581 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
99900547 AGTAATTTCG
99900557 GGTCGGTTAACC
1 GGTCGGTTAACC
99900569 GGTCGGTTAACC
1 GGTCGGTTAACC
99900581 G
1 G
99900582 AATGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:99901553 original size:55 final size:55
Alignment explanation
Indices: 99901469--99901580 Score: 215
Period size: 55 Copynumber: 2.0 Consensus size: 55
99901459 TCTCACCTTA
99901469 ACCTATAAAAAGGAAAACAGTACAGTTCAACACACTCAAATGTATTAATAACAAT
1 ACCTATAAAAAGGAAAACAGTACAGTTCAACACACTCAAATGTATTAATAACAAT
*
99901524 ACCTATAAAAAGGAGAACAGTACAGTTCAACACACTCAAATGTATTAATAACAAT
1 ACCTATAAAAAGGAAAACAGTACAGTTCAACACACTCAAATGTATTAATAACAAT
99901579 AC
1 AC
99901581 TAAGACTGAA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.50, C:0.19, G:0.10, T:0.21
Consensus pattern (55 bp):
ACCTATAAAAAGGAAAACAGTACAGTTCAACACACTCAAATGTATTAATAACAAT
Found at i:99907305 original size:83 final size:86
Alignment explanation
Indices: 99907188--99907372 Score: 227
Period size: 83 Copynumber: 2.2 Consensus size: 86
99907178 TTTGGCCTCC
* *
99907188 CTAAAAATGAAAAAAATTTCAATTAAGCCATCTTATAAATAGAGAAACTATTAAGT-A-ATATAT
1 CTAAAAATG--AAAAATTTCAATTAAGCCATCTTATAAATAAAGAAACTATAAAGTAATATATAT
*
99907251 AGTGAAATTGCACTTTAA-CCC-
64 AGTAAAATTGCACTTTAATCCCT
* * * *
99907272 CTCAAAATGAAAAATTGTCAATTCAATCC-TCTTATAAATAAAGAAATTATAAATTAATATATAT
1 CTAAAAATGAAAAATT-TCAATT-AAGCCATCTTATAAATAAAGAAACTATAAAGTAATATATAT
*
99907336 AGTAAAATTTCACTTTAATCCCT
64 AGTAAAATTGCACTTTAATCCCT
99907359 CTAAAAATGAAAAA
1 CTAAAAATGAAAAA
99907373 AAATTATTTA
Statistics
Matches: 86, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
82 7 0.08
83 28 0.33
84 13 0.15
85 22 0.26
86 3 0.03
87 13 0.15
ACGTcount: A:0.49, C:0.13, G:0.07, T:0.31
Consensus pattern (86 bp):
CTAAAAATGAAAAATTTCAATTAAGCCATCTTATAAATAAAGAAACTATAAAGTAATATATATAG
TAAAATTGCACTTTAATCCCT
Found at i:99911710 original size:30 final size:30
Alignment explanation
Indices: 99911676--99911738 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
99911666 ACTTATTTTA
99911676 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
**
99911706 TTGTTAATTTTGTTATTATTTTGGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
99911736 TTG
1 TTG
99911739 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.22, C:0.03, G:0.17, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:99917371 original size:31 final size:31
Alignment explanation
Indices: 99917313--99917371 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 31
99917303 ACTTAGTCAT
* *
99917313 TTAAATAAAAACTTTCAAATAGTTCAATTAC
1 TTAAATAAAAACTCTCAAATAGCTCAATTAC
* * *
99917344 TTAAATGAAAACTCTCGAGTAGCTCAAT
1 TTAAATAAAAACTCTCAAATAGCTCAAT
99917372 GACCATTTTG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 23 1.00
ACGTcount: A:0.44, C:0.15, G:0.08, T:0.32
Consensus pattern (31 bp):
TTAAATAAAAACTCTCAAATAGCTCAATTAC
Found at i:99921422 original size:24 final size:24
Alignment explanation
Indices: 99921395--99921446 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
99921385 TTAGTAAGTC
*
99921395 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
99921419 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
99921443 AAAT
1 AAAT
99921447 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:99923383 original size:24 final size:24
Alignment explanation
Indices: 99923356--99923407 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
99923346 TTAGTAAGTC
99923356 AAATAAACTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
* *
99923380 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
99923404 AAAT
1 AAAT
99923408 CTTCTAGAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.58, C:0.10, G:0.00, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:99924961 original size:20 final size:21
Alignment explanation
Indices: 99924936--99924974 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
99924926 CACACCCTGC
99924936 TTGTTT-TTTATTTACTTTGT
1 TTGTTTCTTTATTTACTTTGT
*
99924956 TTGTTTCTTTTTTTACTTT
1 TTGTTTCTTTATTTACTTT
99924975 TTTTTAACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.08, C:0.08, G:0.08, T:0.77
Consensus pattern (21 bp):
TTGTTTCTTTATTTACTTTGT
Found at i:99925109 original size:23 final size:26
Alignment explanation
Indices: 99925072--99925129 Score: 86
Period size: 23 Copynumber: 2.3 Consensus size: 26
99925062 TGTATATCTG
*
99925072 AAATTTTTTATAATATATATTTTT-A
1 AAATATTTTATAATATATATTTTTGA
99925097 AAA-ATTTTA-AATATATATTTTTGA
1 AAATATTTTATAATATATATTTTTGA
99925121 AAATATTTT
1 AAATATTTT
99925130 TTAAATTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 13 0.43
24 9 0.30
25 8 0.27
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (26 bp):
AAATATTTTATAATATATATTTTTGA
Found at i:99925139 original size:34 final size:34
Alignment explanation
Indices: 99925088--99925157 Score: 106
Period size: 34 Copynumber: 2.1 Consensus size: 34
99925078 TTTATAATAT
99925088 ATATTTTTAAAAATTTTAAATATATATTTTTGAAA
1 ATATTTTTAAAAATTTTAAATAT-TATTTTTGAAA
* *
99925123 ATATTTTT-TAAATTTTAAATATTATTTTTTAAA
1 ATATTTTTAAAAATTTTAAATATTATTTTTGAAA
99925156 AT
1 AT
99925158 TGTAAATATT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 12 0.36
34 13 0.39
35 8 0.24
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (34 bp):
ATATTTTTAAAAATTTTAAATATTATTTTTGAAA
Found at i:99925157 original size:22 final size:21
Alignment explanation
Indices: 99925124--99925196 Score: 103
Period size: 22 Copynumber: 3.5 Consensus size: 21
99925114 TTTTTGAAAA
99925124 TATTTTTTAAATTTTAAATAT
1 TATTTTTTAAATTTTAAATAT
*
99925145 TATTTTTTAAAATTGTAAATAT
1 TATTTTTT-AAATTTTAAATAT
* *
99925167 TATTTTTTAAATATTAAGTA-
1 TATTTTTTAAATTTTAAATAT
99925187 TATTTTTTAA
1 TATTTTTTAA
99925197 TAATATAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
20 10 0.21
21 17 0.36
22 20 0.43
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (21 bp):
TATTTTTTAAATTTTAAATAT
Found at i:99925195 original size:56 final size:57
Alignment explanation
Indices: 99925074--99925196 Score: 135
Period size: 56 Copynumber: 2.2 Consensus size: 57
99925064 TATATCTGAA
* * *
99925074 ATTTTTTATAATATATATTTTTAAAAATTTTAAATATATATTTTTGAAAATATTTTTT
1 ATTTTTTA-AATATATATTTTTAAAAATTGTAAATATATATTTTTGAAAATATTGTAT
** * *
99925132 AAATTTTAAATAT-TATTTTTTAAAATTGTAAATAT-TATTTTT-TAAATATTAAGTAT
1 ATTTTTTAAATATATATTTTTAAAAATTGTAAATATATATTTTTGAAAATATT--GTAT
99925188 ATTTTTTAA
1 ATTTTTTAA
99925197 TAATATAAAA
Statistics
Matches: 54, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
54 7 0.13
55 7 0.13
56 29 0.54
57 5 0.09
58 6 0.11
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (57 bp):
ATTTTTTAAATATATATTTTTAAAAATTGTAAATATATATTTTTGAAAATATTGTAT
Found at i:99925303 original size:20 final size:19
Alignment explanation
Indices: 99925284--99925428 Score: 95
Period size: 20 Copynumber: 7.4 Consensus size: 19
99925274 ACAAATTAAA
99925284 AATATTTAAAATATTATAAAT
1 AATATTTAAAAT-TTA-AAAT
*
99925305 AATA-AT-AAATTTGAAAAGT
1 AATATTTAAAATTT-AAAA-T
* *
99925324 CATATCTTTAAAATATTTAAAT
1 -A-ATATTTAAAAT-TTAAAAT
* *
99925346 -AT-TTTATATTATTAAAA-
1 AATATTTAAAAT-TTAAAAT
*
99925363 ATATATTTAATATTTAAAAAT
1 A-ATATTTAAAATTT-AAAAT
99925384 AATATTTAAAATTTAAAAAT
1 AATATTTAAAATTT-AAAAT
99925404 AATATTTAAAATTTAAAA-
1 AATATTTAAAATTTAAAAT
99925422 AATATTT
1 AATATTT
99925429 TCAAAAATAT
Statistics
Matches: 101, Mismatches: 11, Indels: 27
0.73 0.08 0.19
Matches are distributed among these distances:
18 24 0.24
19 16 0.16
20 43 0.43
21 7 0.07
22 2 0.02
23 7 0.07
24 2 0.02
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (19 bp):
AATATTTAAAATTTAAAAT
Found at i:99925414 original size:13 final size:13
Alignment explanation
Indices: 99925370--99925394 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
99925360 AAAATATATT
99925370 TAATATTTAAAAA
1 TAATATTTAAAAA
99925383 TAATATTTAAAA
1 TAATATTTAAAA
99925395 TTTAAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
TAATATTTAAAAA
Found at i:99925420 original size:7 final size:7
Alignment explanation
Indices: 99925367--99925421 Score: 51
Period size: 7 Copynumber: 8.1 Consensus size: 7
99925357 TTAAAAATAT
*
99925367 ATTTAAT
1 ATTTAAA
99925374 ATTTAAA
1 ATTTAAA
* *
99925381 A-ATAAT
1 ATTTAAA
99925387 ATTTAAA
1 ATTTAAA
99925394 ATTTAAA
1 ATTTAAA
* *
99925401 A-ATAAT
1 ATTTAAA
99925407 ATTTAAA
1 ATTTAAA
99925414 ATTTAAA
1 ATTTAAA
99925421 A
1 A
99925422 AATATTTTCA
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
6 8 0.22
7 29 0.78
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
ATTTAAA
Found at i:99925435 original size:21 final size:20
Alignment explanation
Indices: 99925357--99925470 Score: 118
Period size: 20 Copynumber: 6.0 Consensus size: 20
99925347 TTTTATATTA
*
99925357 TTAAAAAT-ATATTTAATAT
1 TTAAAAATAATATTTAAAAT
99925376 TTAAAAATAATATTTAAAAT
1 TTAAAAATAATATTTAAAAT
99925396 TTAAAAATAATATTTAAAAT
1 TTAAAAATAATATTTAAAAT
99925416 TT-AAAA-AATA-TT----T
1 TTAAAAATAATATTTAAAAT
* *
99925429 TCAAAAATATATATGTAAAAT
1 TTAAAAATA-ATATTTAAAAT
99925450 TTAAAAATATATATTATAAAA
1 TTAAAAATA-ATATT-TAAAA
99925471 CATTTCAAAT
Statistics
Matches: 80, Mismatches: 5, Indels: 17
0.78 0.05 0.17
Matches are distributed among these distances:
13 2 0.03
14 4 0.05
15 1 0.01
16 3 0.04
17 3 0.04
18 4 0.05
19 12 0.15
20 32 0.40
21 14 0.17
22 5 0.06
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.40
Consensus pattern (20 bp):
TTAAAAATAATATTTAAAAT
Found at i:99925528 original size:20 final size:20
Alignment explanation
Indices: 99925500--99925542 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
99925490 CAATTTTTTA
* *
99925500 AAATTAATAATAAATAAA-AT
1 AAATAAATAAGAAA-AAATAT
99925520 AAATAAATAAGAAAAAATAT
1 AAATAAATAAGAAAAAATAT
99925540 AAA
1 AAA
99925543 ACTTAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 3 0.15
20 17 0.85
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (20 bp):
AAATAAATAAGAAAAAATAT
Found at i:99932099 original size:30 final size:31
Alignment explanation
Indices: 99932036--99932100 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 31
99932026 TAAATTGCGG
*
99932036 ATTTAGTTCTTATATTTTTTGAATTGATTAA
1 ATTTAGTTCTTATATTTTTTGAATTGATGAA
99932067 ATTTAGTAT-TTATATTTTTTGAATT-ATGAA
1 ATTTAGT-TCTTATATTTTTTGAATTGATGAA
99932097 ATTT
1 ATTT
99932101 GAGTCTTGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
30 8 0.25
31 23 0.72
32 1 0.03
ACGTcount: A:0.31, C:0.02, G:0.09, T:0.58
Consensus pattern (31 bp):
ATTTAGTTCTTATATTTTTTGAATTGATGAA
Found at i:99933819 original size:40 final size:41
Alignment explanation
Indices: 99933775--99933861 Score: 113
Period size: 40 Copynumber: 2.1 Consensus size: 41
99933765 TCAAATACAT
99933775 TTAAAACAAATATTAAAACAAGAAACAAAAT-AAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAAATGAAAAATATA
* * * * *
99933815 TTAAAACAATTCTTAAAACAATACACAAATTGAAAAATATA
1 TTAAAACAAATATTAAAACAAGAAACAAAATGAAAAATATA
*
99933856 ATAAAA
1 TTAAAA
99933862 ATTGATTATA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
40 26 0.65
41 14 0.35
ACGTcount: A:0.66, C:0.09, G:0.02, T:0.23
Consensus pattern (41 bp):
TTAAAACAAATATTAAAACAAGAAACAAAATGAAAAATATA
Found at i:99933903 original size:17 final size:17
Alignment explanation
Indices: 99933883--99933915 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
99933873 TAAAACTAAA
99933883 ATTAAAATATAAATATG
1 ATTAAAATATAAATATG
*
99933900 ATTAAAATATATATAT
1 ATTAAAATATAAATAT
99933916 TTATTATATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (17 bp):
ATTAAAATATAAATATG
Found at i:99945190 original size:15 final size:16
Alignment explanation
Indices: 99945172--99945206 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
99945162 AAATATATAT
99945172 AAAAT-AAAATTTAAA
1 AAAATCAAAATTTAAA
*
99945187 AAAATCATAATTTAAA
1 AAAATCAAAATTTAAA
99945203 AAAA
1 AAAA
99945207 ATGTGTCAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAATCAAAATTTAAA
Found at i:99979666 original size:45 final size:43
Alignment explanation
Indices: 99979471--99979683 Score: 173
Period size: 45 Copynumber: 4.7 Consensus size: 43
99979461 TGTGTGAGCC
* * *
99979471 AGTGTAAGACATGTCTGGGACATGCATCGGCCATATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-C-TATGA-GAGTGCT
* * *
99979517 ATTGTAAGA-ATGTCTAGGACATAGTATCGGC-ATTGAGACGAGTGCT
1 AGTGTAAGACATGTCTGGGACAT-GCATCGGCTA-T--GA-GAGTGCT
* *
99979563 AGTGTAAGACATGTCTGGGACATGCTTCGGGCT-CGAGACGTAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATC-GGCTATGAGA-GT--GCT
*
99979609 AG-GTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGA-GTGCT
*
99979652 AGTGTAAGACCATGTCTAGGACATGGCATCGG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGG
99979684 TACAGATATG
Statistics
Matches: 136, Mismatches: 17, Indels: 28
0.75 0.09 0.15
Matches are distributed among these distances:
43 7 0.05
44 15 0.11
45 56 0.41
46 43 0.32
47 15 0.11
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.25
Consensus pattern (43 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGAGTGCT
Done.