Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 295 of 295
Found at i:99984354 original size:39 final size:40
Alignment explanation
Indices: 99984309--99984476 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
99984299 CGGGGTTTAG
* * *
99984309 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
99984348 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
99984388 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
99984428 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
99984469 CCGGATAT
1 CCGGATAT
99984477 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:99984459 original size:41 final size:40
Alignment explanation
Indices: 99984332--99984476 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
99984322 CTCGCACAAG
* * * * *
99984332 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
99984372 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
99984412 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
99984453 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
99984477 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:99992341 original size:39 final size:40
Alignment explanation
Indices: 99992296--99992463 Score: 106
Period size: 40 Copynumber: 4.2 Consensus size: 40
99992286 CGGGGTTTAG
* * *
99992296 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
99992335 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * * **
99992375 CCGGATATAGTCGCTAGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGA-CTTAAC
* ** * * * *
99992415 CCGGATGTAGTCGCTTAGCACAAAAGCCTTCGGGACTTAGC
1 CCGGATATAACCAC-TAGCATAAAGGCCTTCGGGACTTAAC
99992456 CCGGATAT
1 CCGGATAT
99992464 CATTCGAGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
39 18 0.17
40 61 0.56
41 27 0.25
42 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:99992446 original size:41 final size:40
Alignment explanation
Indices: 99992319--99992463 Score: 193
Period size: 40 Copynumber: 3.6 Consensus size: 40
99992309 CTCGCACAAG
* * * * *
99992319 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
99992359 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * *
99992399 GCCTTC-GGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
99992440 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
99992464 CATTCGAGTA
Statistics
Matches: 92, Mismatches: 10, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
39 3 0.03
40 59 0.64
41 27 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:99996965 original size:50 final size:50
Alignment explanation
Indices: 99996890--99996989 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
99996880 AAGACCTAAC
99996890 CTTCTTAACATCTTCCACATAGGCTTGTCATCATGGATTGAGATTTTAAG
1 CTTCTTAACATCTTCCACATAGGCTTGTCATCATGGATTGAGATTTTAAG
99996940 CTTCTTAACATCTTCCACATAGGCTTGTCATCATGGATTGAGATTTTAAG
1 CTTCTTAACATCTTCCACATAGGCTTGTCATCATGGATTGAGATTTTAAG
99996990 TCCACGAACA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (50 bp):
CTTCTTAACATCTTCCACATAGGCTTGTCATCATGGATTGAGATTTTAAG
Found at i:99999719 original size:93 final size:93
Alignment explanation
Indices: 99999612--99999782 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
99999602 GCCCCTAAGT
* *
99999612 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
99999677 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
99999705 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
99999770 CGAGTTCGGATGC
66 CGAGTTCGGATGC
99999783 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:99999779 original size:46 final size:46
Alignment explanation
Indices: 99999607--99999779 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
99999597 AACCCGCCCC
* * *
99999607 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
99999653 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
99999701 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
99999746 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
99999780 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:100007274 original size:93 final size:93
Alignment explanation
Indices: 100007167--100007337 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
100007157 GCCCCTAAGT
* *
100007167 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
100007232 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
100007260 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
100007325 CGAGTTCGGATGC
66 CGAGTTCGGATGC
100007338 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:100007334 original size:46 final size:46
Alignment explanation
Indices: 100007162--100007334 Score: 219
Period size: 46 Copynumber: 3.7 Consensus size: 46
100007152 AACCCGCCCC
* * *
100007162 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
100007208 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
100007256 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
100007301 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
100007335 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:100015306 original size:30 final size:30
Alignment explanation
Indices: 100015272--100015331 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
100015262 ATTTAATACG
100015272 AACTTTGGCAAAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
* *
100015302 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
100015332 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.28, C:0.27, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:100022981 original size:12 final size:12
Alignment explanation
Indices: 100022964--100022991 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
100022954 AGCAAAATAG
100022964 GTTTTTAGTGGC
1 GTTTTTAGTGGC
100022976 GTTTTTAGTGGC
1 GTTTTTAGTGGC
100022988 GTTT
1 GTTT
100022992 GAATGAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.07, G:0.32, T:0.54
Consensus pattern (12 bp):
GTTTTTAGTGGC
Found at i:100023051 original size:39 final size:40
Alignment explanation
Indices: 100022997--100023088 Score: 125
Period size: 39 Copynumber: 2.3 Consensus size: 40
100022987 CGTTTGAATG
100022997 AAAAACGCCGCTAAAGAACGAGCATTAGCG-TCG-CTTTTT
1 AAAAACGCCGCTAAAGAACGAGCATTAGCGAT-GTCTTTTT
* * * *
100023036 AAAAACACCGCTAAAGATCGAGTATTAGCGATGTTTTTTT
1 AAAAACGCCGCTAAAGAACGAGCATTAGCGATGTCTTTTT
100023076 AAAAACGCCGCTA
1 AAAAACGCCGCTA
100023089 TATGTACACC
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
39 28 0.61
40 18 0.39
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (40 bp):
AAAAACGCCGCTAAAGAACGAGCATTAGCGATGTCTTTTT
Found at i:100023087 original size:40 final size:39
Alignment explanation
Indices: 100022997--100023129 Score: 126
Period size: 40 Copynumber: 3.4 Consensus size: 39
100022987 CGTTTGAATG
100022997 AAAAACGCCGCTAAAGAACGAGCATTAGCGTCGCTTTTT
1 AAAAACGCCGCTAAAGAACGAGCATTAGCGTCGCTTTTT
* * * *
100023036 AAAAACACCGCTAAAGATCGAGTATTAGCGAT-GTTTTTTT
1 AAAAACGCCGCTAAAGAACGAGCATTAGCG-TCG-CTTTTT
* * * * * *
100023076 AAAAACGCCGCTATATGTAC-ACCTTTAGCGGCGCTTTTCA
1 AAAAACGCCGCTA-AAGAACGAGCATTAGCGTCGCTTTT-T
100023116 AAAAACGCCGCTAA
1 AAAAACGCCGCTAA
100023130 TGCTTGATTT
Statistics
Matches: 75, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
39 33 0.44
40 39 0.52
41 3 0.04
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.26
Consensus pattern (39 bp):
AAAAACGCCGCTAAAGAACGAGCATTAGCGTCGCTTTTT
Found at i:100023858 original size:14 final size:15
Alignment explanation
Indices: 100023841--100023881 Score: 59
Period size: 14 Copynumber: 2.9 Consensus size: 15
100023831 TATGATTTAT
100023841 GGTTTAAGGGTT-GG
1 GGTTTAAGGGTTAGG
*
100023855 GGTTTAAGGCTTAGG
1 GGTTTAAGGGTTAGG
100023870 GG-TTAAGGGTTA
1 GGTTTAAGGGTTA
100023882 AGTGTTAGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 20 0.83
15 4 0.17
ACGTcount: A:0.20, C:0.02, G:0.44, T:0.34
Consensus pattern (15 bp):
GGTTTAAGGGTTAGG
Found at i:100024082 original size:14 final size:14
Alignment explanation
Indices: 100024060--100024104 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
100024050 TTAATTATCA
*
100024060 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
100024074 TTATGGTTTAGGGT
1 TTATGGTTTAGGGT
* *
100024088 ATATGATTTAGGGT
1 TTATGGTTTAGGGT
100024102 TTA
1 TTA
100024105 AAATGTATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:100024141 original size:7 final size:7
Alignment explanation
Indices: 100024123--100024176 Score: 72
Period size: 7 Copynumber: 7.6 Consensus size: 7
100024113 AAGCTACTAT
*
100024123 TTTAAGG
1 TTTATGG
100024130 TTTATGG
1 TTTATGG
*
100024137 ATTATGGG
1 TTTAT-GG
100024145 TTTATGG
1 TTTATGG
*
100024152 ATTATGG
1 TTTATGG
100024159 TTTATGG
1 TTTATGG
100024166 TTTATGG
1 TTTATGG
100024173 TTTA
1 TTTA
100024177 AGGGTTGGGG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
7 35 0.85
8 6 0.15
ACGTcount: A:0.20, C:0.00, G:0.28, T:0.52
Consensus pattern (7 bp):
TTTATGG
Found at i:100024162 original size:14 final size:14
Alignment explanation
Indices: 100024128--100024176 Score: 80
Period size: 14 Copynumber: 3.4 Consensus size: 14
100024118 ACTATTTTAA
100024128 GGTTTATGGATTAT
1 GGTTTATGGATTAT
100024142 GGGTTTATGGATTAT
1 -GGTTTATGGATTAT
*
100024157 GGTTTATGGTTTAT
1 GGTTTATGGATTAT
100024171 GGTTTA
1 GGTTTA
100024177 AGGGTTGGGG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
14 19 0.58
15 14 0.42
ACGTcount: A:0.18, C:0.00, G:0.31, T:0.51
Consensus pattern (14 bp):
GGTTTATGGATTAT
Found at i:100024188 original size:14 final size:15
Alignment explanation
Indices: 100024171--100024203 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
100024161 TATGGTTTAT
*
100024171 GGTTTAAGGGTT-GG
1 GGTTTAAGGCTTAGG
100024185 GGTTTAAGGCTTAGG
1 GGTTTAAGGCTTAGG
100024200 GGTT
1 GGTT
100024204 AGGGGTTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.15, C:0.03, G:0.45, T:0.36
Consensus pattern (15 bp):
GGTTTAAGGCTTAGG
Found at i:100024807 original size:19 final size:19
Alignment explanation
Indices: 100024782--100024907 Score: 183
Period size: 19 Copynumber: 6.9 Consensus size: 19
100024772 ATAATCTTCA
100024782 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
100024801 GTGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
100024820 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
100024837 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
100024855 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
100024872 ATGAT-TGCCATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
100024890 ATGATATACAATCTTAGA
1 ATGATATGCAATCTTAGA
100024908 AGATATGATT
Statistics
Matches: 96, Mismatches: 5, Indels: 12
0.85 0.04 0.11
Matches are distributed among these distances:
17 32 0.33
18 31 0.32
19 33 0.34
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:100024852 original size:35 final size:35
Alignment explanation
Indices: 100024790--100024907 Score: 191
Period size: 35 Copynumber: 3.3 Consensus size: 35
100024780 CAATGATATG
*
100024790 CAATCTTAGATGTGATATGCAATCTTAGATATGATA
1 CAATCTTAGATATGAT-TGCAATCTTAGATATGATA
100024826 CAATCTTAGATATGATTGCAATCTTAGATATGATA
1 CAATCTTAGATATGATTGCAATCTTAGATATGATA
*
100024861 CAATCTTAGATATGATTGCCATCTTAGATATGATATA
1 CAATCTTAGATATGATTGCAATCTTAGATATG--ATA
100024898 CAATCTTAGA
1 CAATCTTAGA
100024908 AGATATGATT
Statistics
Matches: 78, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
35 50 0.64
36 15 0.19
37 13 0.17
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.36
Consensus pattern (35 bp):
CAATCTTAGATATGATTGCAATCTTAGATATGATA
Found at i:100025448 original size:17 final size:17
Alignment explanation
Indices: 100025383--100025448 Score: 59
Period size: 17 Copynumber: 3.9 Consensus size: 17
100025373 TCTAAACCAA
*
100025383 TATATTTTATATTTT-T
1 TATATATTATATTTTAT
100025399 TATATAATTATTATTCTTA-
1 TATAT-ATTA-TATT-TTAT
*
100025418 TAAATA-TAT-TTTTAT
1 TATATATTATATTTTAT
100025433 TATATATTATATTTTA
1 TATATATTATATTTTA
100025449 AATTTATTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 13
0.71 0.05 0.23
Matches are distributed among these distances:
14 3 0.08
15 7 0.17
16 9 0.22
17 10 0.25
18 5 0.12
19 6 0.15
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (17 bp):
TATATATTATATTTTAT
Found at i:100025472 original size:26 final size:25
Alignment explanation
Indices: 100025425--100025473 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
100025415 TTATAAATAT
* * *
100025425 ATTTTTATTATATATTATATTTTAA
1 ATTTTTATTAAATATCACATTTTAA
100025450 ATTTATTATTAAATATCACATTTT
1 ATTT-TTATTAAATATCACATTTT
100025474 TTTATATGCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 4 0.20
26 16 0.80
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (25 bp):
ATTTTTATTAAATATCACATTTTAA
Found at i:100031268 original size:13 final size:12
Alignment explanation
Indices: 100031243--100031285 Score: 61
Period size: 13 Copynumber: 3.5 Consensus size: 12
100031233 CTTCTATTTC
100031243 AAAAAAAAA-AG
1 AAAAAAAAAGAG
100031254 AAAAGAAAAAGAG
1 AAAA-AAAAAGAG
100031267 AAAAAATAAAGAG
1 AAAAAA-AAAGAG
100031280 AAAAAA
1 AAAAAA
100031286 GGAAAAAATG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
11 4 0.14
12 7 0.24
13 18 0.62
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (12 bp):
AAAAAAAAAGAG
Found at i:100031294 original size:21 final size:20
Alignment explanation
Indices: 100031247--100031294 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
100031237 TATTTCAAAA
*
100031247 AAAAAAGAAAAGAAAAAGAG
1 AAAAAATAAAAGAAAAAGAG
100031267 AAAAAATAAAGAGAAAAA-AGG
1 AAAAAATAAA-AGAAAAAGA-G
100031288 AAAAAAT
1 AAAAAAT
100031295 GGATAGGCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 10 0.40
21 15 0.60
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.04
Consensus pattern (20 bp):
AAAAAATAAAAGAAAAAGAG
Found at i:100032305 original size:44 final size:44
Alignment explanation
Indices: 100032168--100032340 Score: 152
Period size: 44 Copynumber: 3.9 Consensus size: 44
100032158 GAAACAAGAT
* * * * *
100032168 TTGGCATCCCTATGTTTATAGGGAACAGATCAAAGATAG-TAGA
1 TTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAAAA
* * * * * * * ** **
100032211 TCTGACATTCCTGTGCTTACAGCGAAGCAGATTGAAGATTTCAGCA
1 T-TGGCATCCCTGTGTTTATAGGGAA-CAAATCGAAGATAGCAAAA
* *
100032257 -TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGCAAAA
1 TTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAAAA
100032300 TTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCA
1 TTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCA
100032341 GATCTAACCT
Statistics
Matches: 100, Mismatches: 26, Indels: 7
0.75 0.20 0.05
Matches are distributed among these distances:
43 14 0.14
44 75 0.75
45 10 0.10
46 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.27
Consensus pattern (44 bp):
TTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAAAA
Found at i:100032543 original size:119 final size:119
Alignment explanation
Indices: 100032335--100032928 Score: 990
Period size: 119 Copynumber: 5.0 Consensus size: 119
100032325 CAAATCGAAG
*
100032335 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAAATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* * *
100032400 TTACAGGGAACAAATCGAGGACATAGTAGATTTGACTCTCAGACGTTCTCAAAG
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* *
100032454 ATAGCATATCTAACCTTCAGATGTTTATACTGATGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
100032519 TTACAAGGAAAAAATCAAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* *
100032573 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTTTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
*
100032638 TTAAAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* *
100032692 ATAACAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* *
100032757 CTACAAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * *
100032811 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGGTTTGGCATCCTTGTGC
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* * * *
100032876 TTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAA
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
100032929 CAGACTCAAG
Statistics
Matches: 444, Mismatches: 31, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
119 444 1.00
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.30
Consensus pattern (119 bp):
ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
Found at i:100032957 original size:83 final size:83
Alignment explanation
Indices: 100032852--100033311 Score: 816
Period size: 83 Copynumber: 5.5 Consensus size: 83
100032842 GAAGCAGATC
100032852 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
100032917 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
100032935 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
100033000 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
100033018 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
*
100033083 AATGTTCTCAAATAGACT
66 AATGTTCTCAAACAGACT
* *
100033101 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACCTTGCAGACATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
100033166 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * * *
100033184 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAGA-AAGTTGAGGACCTTGCATATATGACTCT
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGA-ACAAATCGAGGACATTGCAGATATGACTCT
*
100033248 CAAATGTTCTCAAATAGACT
64 CAAATGTTCTCAAACAGACT
100033268 CAAGAT-GTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGA
100033312 TGTGACAACC
Statistics
Matches: 363, Mismatches: 11, Indels: 7
0.95 0.03 0.02
Matches are distributed among these distances:
81 1 0.00
82 30 0.08
83 260 0.72
84 71 0.20
85 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:100035123 original size:27 final size:26
Alignment explanation
Indices: 100035092--100035268 Score: 185
Period size: 27 Copynumber: 6.6 Consensus size: 26
100035082 TAAATTGTAC
100035092 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
100035119 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
100035145 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
100035173 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
100035200 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
100035227 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
100035254 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
100035269 GGCTCAATAT
Statistics
Matches: 128, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
26 1 0.01
27 125 0.98
28 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:100035153 original size:54 final size:54
Alignment explanation
Indices: 100035092--100035268 Score: 207
Period size: 54 Copynumber: 3.3 Consensus size: 54
100035082 TAAATTGTAC
* **
100035092 AGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATT-GACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* ** *
100035147 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCG-ATTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
* * *
100035200 AGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
*
100035254 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
100035269 GGCTCAATAT
Statistics
Matches: 105, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
53 2 0.02
54 100 0.95
55 3 0.03
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTGACTATGTAGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:100035232 original size:81 final size:81
Alignment explanation
Indices: 100035093--100035247 Score: 224
Period size: 81 Copynumber: 1.9 Consensus size: 81
100035083 AAATTGTACA
* *
100035093 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
100035158 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
100035174 GCACTAAGTGTGCGAGTT-GACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACTAAGT
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
*
100035237 GTGCGAGTTGA
64 GTGCGAATTGA
100035248 TTATATAGCA
Statistics
Matches: 66, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 1 0.02
81 63 0.95
82 2 0.03
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:100035259 original size:81 final size:81
Alignment explanation
Indices: 100035089--100035268 Score: 220
Period size: 81 Copynumber: 2.2 Consensus size: 81
100035079 GATTAAATTG
* *
100035089 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
100035154 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
100035170 TGCGGCACTAAGTGTGCGAGTT-GACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
100035233 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
100035251 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
100035269 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
80 1 0.01
81 80 0.96
82 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:100035279 original size:27 final size:27
Alignment explanation
Indices: 100035174--100035279 Score: 77
Period size: 27 Copynumber: 3.9 Consensus size: 27
100035164 TGACCATGCG
* * * *
100035174 GCACTAAGTGTGCGAGTTGACTATGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
** * * **
100035201 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
100035228 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
100035255 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
100035280 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:100043217 original size:27 final size:26
Alignment explanation
Indices: 100043187--100043362 Score: 156
Period size: 27 Copynumber: 6.5 Consensus size: 26
100043177 AAATTGTACA
100043187 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTT
* * *
100043214 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* **
100043241 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTT
* *
100043268 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTT
* *
100043296 GCACTAAGTGTGCGATTTGATTACG-T
1 GCACTAAGTGTGCGA-TTGACTATGTT
* * *
100043322 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTT
*
100043349 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
100043363 GGCTCAATAT
Statistics
Matches: 123, Mismatches: 22, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
26 23 0.19
27 76 0.62
28 24 0.20
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTT
Found at i:100043247 original size:54 final size:53
Alignment explanation
Indices: 100043186--100043362 Score: 173
Period size: 54 Copynumber: 3.3 Consensus size: 53
100043176 TAAATTGTAC
100043186 AGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATT-GACTATG-TGCACTAAGTGTGCGAAATGAATATGAT
* * * *
100043241 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCG-AGTCTAACTATG-T
1 AGCACTAAGTGTGCG-ATTGACTATG-TGCACTAAGTGTGCGAAAT-GAA-TATGAT
* * ** *
100043295 AGCACTAAGTGTGCGATTTGATTACGTGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTGACTATGTGCACTAAGTGTGCGAAATGAATATGAT
*
100043348 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
100043363 GGCTCAATAT
Statistics
Matches: 101, Mismatches: 14, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
53 20 0.20
54 53 0.52
55 28 0.28
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTGACTATGTGCACTAAGTGTGCGAAATGAATATGAT
Found at i:100043327 original size:81 final size:81
Alignment explanation
Indices: 100043187--100043341 Score: 222
Period size: 81 Copynumber: 1.9 Consensus size: 81
100043177 AAATTGTACA
* * * *
100043187 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
100043252 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
100043268 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTG
*
100043332 TGCGAGTTGA
65 TGCGAATTGA
100043342 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
81 37 0.57
82 28 0.43
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:100043353 original size:81 final size:81
Alignment explanation
Indices: 100043183--100043362 Score: 218
Period size: 81 Copynumber: 2.2 Consensus size: 81
100043173 GATTAAATTG
* * * *
100043183 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
100043248 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
100043264 TGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGCACTA
1 TACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTA
* **
100043328 AGTGTGCGAGTTGATTA
65 AGTGTGCGAATTGACCA
* *
100043345 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
100043363 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
81 54 0.66
82 28 0.34
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:100047019 original size:20 final size:20
Alignment explanation
Indices: 100046977--100047019 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
100046967 CATGGATGTA
*
100046977 TATGCTAGAAATTAGAAATT
1 TATGCTAGAAAATAGAAATT
*
100046997 TATGGTAGAAAAT-GAAATAT
1 TATGCTAGAAAATAGAAAT-T
100047017 TAT
1 TAT
100047020 TGATAGATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.47, C:0.02, G:0.16, T:0.35
Consensus pattern (20 bp):
TATGCTAGAAAATAGAAATT
Found at i:100047104 original size:20 final size:20
Alignment explanation
Indices: 100047079--100047124 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
100047069 AGGGACTAAA
* *
100047079 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTATAAAATTTG
*
100047099 ATGAAAAAATTATAAAATTTT
1 ATG-AAAAATTATAAAATTTG
100047120 ATGAA
1 ATGAA
100047125 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.52, C:0.00, G:0.13, T:0.35
Consensus pattern (20 bp):
ATGAAAAATTATAAAATTTG
Found at i:100048876 original size:46 final size:44
Alignment explanation
Indices: 100048820--100048987 Score: 178
Period size: 46 Copynumber: 3.7 Consensus size: 44
100048810 TGGTTGAGCA
*
100048820 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGGATG-GAA-G
** * * *
100048866 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACATATG-GA-T-GGAAG
*
100048913 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAT-GAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGGATGGAA-G
* *
100048957 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCAC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCAC
100048988 TTAGGGGCGG
Statistics
Matches: 102, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
42 2 0.02
44 30 0.29
45 1 0.01
46 32 0.31
47 32 0.31
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (44 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACATATGGATGGAAG
Done.