Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 30 of 295
Found at i:8313185 original size:14 final size:14
Alignment explanation
Indices: 8313166--8313214 Score: 55
Period size: 14 Copynumber: 3.4 Consensus size: 14
8313156 GACACACTAA
8313166 AAATGAATTTAAAC
1 AAATGAATTTAAAC
*
8313180 AAATGATTATTCATAA-
1 AAATGA--ATTTA-AAC
8313196 AAATGAATTTAAAC
1 AAATGAATTTAAAC
8313210 AAATG
1 AAATG
8313215 GTTATTCATA
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
13 2 0.07
14 15 0.52
16 10 0.34
17 2 0.07
ACGTcount: A:0.55, C:0.06, G:0.08, T:0.31
Consensus pattern (14 bp):
AAATGAATTTAAAC
Found at i:8313197 original size:30 final size:30
Alignment explanation
Indices: 8313163--8313224 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
8313153 AAAGACACAC
8313163 TAAAAATGAATTTAAACAAATGATTATTCA
1 TAAAAATGAATTTAAACAAATGATTATTCA
*
8313193 TAAAAATGAATTTAAACAAATGGTTATTCA
1 TAAAAATGAATTTAAACAAATGATTATTCA
8313223 TA
1 TA
8313225 TTCATCCTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.52, C:0.06, G:0.08, T:0.34
Consensus pattern (30 bp):
TAAAAATGAATTTAAACAAATGATTATTCA
Found at i:8313269 original size:11 final size:10
Alignment explanation
Indices: 8313253--8313303 Score: 50
Period size: 11 Copynumber: 5.0 Consensus size: 10
8313243 TTAAATATTA
8313253 TAAAAAATAT
1 TAAAAAATAT
8313263 GTAAAAAATAT
1 -TAAAAAATAT
**
8313274 TAAAATTTATT
1 TAAAAAATA-T
*
8313285 TAAAAAAT-C
1 TAAAAAATAT
8313294 TAAAAAATAT
1 TAAAAAATAT
8313304 GTCGAATAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
9 8 0.25
10 7 0.22
11 17 0.53
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (10 bp):
TAAAAAATAT
Found at i:8314928 original size:17 final size:18
Alignment explanation
Indices: 8314896--8314929 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8314886 AATGTAAAAA
8314896 TAAATTTAATTTAATTTG
1 TAAATTTAATTTAATTTG
*
8314914 TAAATTTTA-TTAATTT
1 TAAATTTAATTTAATTT
8314930 ATATCTTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (18 bp):
TAAATTTAATTTAATTTG
Found at i:8315388 original size:38 final size:39
Alignment explanation
Indices: 8315335--8315429 Score: 106
Period size: 38 Copynumber: 2.5 Consensus size: 39
8315325 CATTTAATTA
* *
8315335 ATTTTTTAAATTTAAAAATTCA-AAAAAGT-TAT-AAAACT
1 ATTTTTAAAATTTAAAAA-TCATAAAAA-TCTATAAAAAAT
* * *
8315373 ATTTTTAAAAATTAAACATCATTAAAATCTATAAAAAAT
1 ATTTTTAAAATTTAAAAATCATAAAAATCTATAAAAAAT
8315412 ATTTTTAAAATTTAAAAA
1 ATTTTTAAAATTTAAAAA
8315430 ATTAATTAAA
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
37 4 0.09
38 22 0.47
39 21 0.45
ACGTcount: A:0.55, C:0.05, G:0.01, T:0.39
Consensus pattern (39 bp):
ATTTTTAAAATTTAAAAATCATAAAAATCTATAAAAAAT
Found at i:8317425 original size:14 final size:15
Alignment explanation
Indices: 8317406--8317438 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
8317396 ATAAAAACTG
8317406 CTTTAATATT-TATA
1 CTTTAATATTGTATA
*
8317420 CTTTAATTTTGTATA
1 CTTTAATATTGTATA
8317435 CTTT
1 CTTT
8317439 TTATCTCTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.27, C:0.09, G:0.03, T:0.61
Consensus pattern (15 bp):
CTTTAATATTGTATA
Found at i:8322508 original size:26 final size:28
Alignment explanation
Indices: 8322478--8322543 Score: 75
Period size: 26 Copynumber: 2.4 Consensus size: 28
8322468 CTCTATTGTT
8322478 TTTTTTTTCCTT-TTTACATTTCT-T-CA
1 TTTTTTTTCCTTCTTTAC-TTTCTATACA
* * *
8322504 TTTTTTTTTCTTCTTTTCTTTCTATATA
1 TTTTTTTTCCTTCTTTACTTTCTATACA
8322532 TTTTTTTTCCTT
1 TTTTTTTTCCTT
8322544 AGCAAAGTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 16 0.48
27 5 0.15
28 12 0.36
ACGTcount: A:0.09, C:0.17, G:0.00, T:0.74
Consensus pattern (28 bp):
TTTTTTTTCCTTCTTTACTTTCTATACA
Found at i:8322508 original size:27 final size:27
Alignment explanation
Indices: 8322477--8322543 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 27
8322467 ACTCTATTGT
8322477 TTTTTTTTTCCTT-TTTACATTTCT-TCA
1 TTTTTTTTTCCTTCTTTAC-TTTCTAT-A
*
8322504 TTTTTTTTT-CTTCTTTTCTTTCTATA
1 TTTTTTTTTCCTTCTTTACTTTCTATA
8322530 TATTTTTTTTCCTT
1 T-TTTTTTTTCCTT
8322544 AGCAAAGTCA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
26 10 0.29
27 22 0.63
28 3 0.09
ACGTcount: A:0.09, C:0.16, G:0.00, T:0.75
Consensus pattern (27 bp):
TTTTTTTTTCCTTCTTTACTTTCTATA
Found at i:8324249 original size:19 final size:20
Alignment explanation
Indices: 8324212--8324249 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
8324202 TCTCTAATAT
* *
8324212 AAAATATATTTTAATATTTG
1 AAAATATATTTGAAAATTTG
8324232 AAAAT-TATTTGAAAATTT
1 AAAATATATTTGAAAATTT
8324250 TGCTAAATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 11 0.69
20 5 0.31
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (20 bp):
AAAATATATTTGAAAATTTG
Found at i:8326803 original size:13 final size:13
Alignment explanation
Indices: 8326785--8326817 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
8326775 AATTAGTAAT
8326785 TATTTATTAAAAA
1 TATTTATTAAAAA
8326798 TATTTATTAAAAA
1 TATTTATTAAAAA
8326811 TATTTAT
1 TATTTAT
8326818 GAATCCGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TATTTATTAAAAA
Found at i:8336663 original size:5 final size:5
Alignment explanation
Indices: 8336653--8336680 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
8336643 TACCTGATAT
8336653 AAATA AAATA AAATA AAATA AAATA AAA
1 AAATA AAATA AAATA AAATA AAATA AAA
8336681 CGCAGATGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAATA
Found at i:8346884 original size:15 final size:15
Alignment explanation
Indices: 8346864--8346917 Score: 64
Period size: 12 Copynumber: 3.9 Consensus size: 15
8346854 TAAAAAGAAG
8346864 TAATAAATAAATAGA
1 TAATAAATAAATAGA
8346879 TAAT-AATAAA-A-A
1 TAATAAATAAATAGA
8346891 TAA-AAAT-AATAGA
1 TAATAAATAAATAGA
8346904 TAATAAAATAAATA
1 TAAT-AAATAAATA
8346918 AATGCTCGAT
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
11 2 0.06
12 8 0.24
13 5 0.15
14 6 0.18
15 8 0.24
16 4 0.12
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (15 bp):
TAATAAATAAATAGA
Found at i:8346901 original size:25 final size:26
Alignment explanation
Indices: 8346868--8346919 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
8346858 AAGAAGTAAT
8346868 AAATAAATAGATAATAATAA-AAATAA
1 AAATAAATAGATAATAA-AATAAATAA
8346894 AAAT-AATAGATAATAAAATAAATAA
1 AAATAAATAGATAATAAAATAAATAA
8346919 A
1 A
8346920 TGCTCGATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 2 0.08
25 19 0.76
26 4 0.16
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.23
Consensus pattern (26 bp):
AAATAAATAGATAATAAAATAAATAA
Found at i:8346906 original size:22 final size:21
Alignment explanation
Indices: 8346872--8346915 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 21
8346862 AGTAATAAAT
8346872 AAATAGATAATAATAAAAATAA
1 AAATAGATAATAAT-AAAATAA
8346894 AAATA-ATAGATAATAAAATAA
1 AAATAGATA-ATAATAAAATAA
8346915 A
1 A
8346916 TAAATGCTCG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 11 0.52
22 10 0.48
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.23
Consensus pattern (21 bp):
AAATAGATAATAATAAAATAA
Found at i:8347901 original size:43 final size:43
Alignment explanation
Indices: 8347853--8347939 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 43
8347843 ATAAATCACC
* *
8347853 TTGTTTTCTTTTGATTTCTTCTTGTTCTTCGAAAAAAATTTGT
1 TTGTTTTCTTTTGATTTCTTCTTGTTCTTCAAAAAAAATGTGT
8347896 TTGTTTTCTTTTGATTTCTTCTTGTTCTTCAAAAAAAATGTGT
1 TTGTTTTCTTTTGATTTCTTCTTGTTCTTCAAAAAAAATGTGT
8347939 T
1 T
8347940 CTCTATTGCT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.20, C:0.11, G:0.11, T:0.57
Consensus pattern (43 bp):
TTGTTTTCTTTTGATTTCTTCTTGTTCTTCAAAAAAAATGTGT
Found at i:8348759 original size:96 final size:96
Alignment explanation
Indices: 8348595--8349241 Score: 772
Period size: 96 Copynumber: 6.9 Consensus size: 96
8348585 TTATAGTTTT
* * * *
8348595 AATCTGCTCCATTGCAACTTTAGGGAGATAAGGTTTGTAATTTGTAGCTTTAATCTGTTCCACTG
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTG
* * **
8348660 TAACTTCAGGGAAATAAGATTCATTATCTTC
66 TAACTTTAAGGAAATAAGATTCGCTATCTTC
* * *
8348691 AATCTGCTTCGCTGCAACTTCAGGGAGATAAGATTTGTAATTTGTAGCTTTAATCTGTTCCACTG
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTG
* *
8348756 TAACTTTAAGGAAATAAGATTCGTTATTTTC
66 TAACTTTAAGGAAATAAGATTCGCTATCTTC
* * * *
8348787 AATCAGCTCCACTGTAATTTCAGGGAGATAAGATTTGTAACTTGTAACTTTAATCTGTTCCACTG
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTG
*
8348852 TAACTTTAAGGAAATAAGATTCGTTATCTTC
66 TAACTTTAAGGAAATAAGATTCGCTATCTTC
* *
8348883 AAT-TAGCTCCACTGCAATTTCAGAGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACT
1 AATCT-GCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACT
* * * *
8348947 GCAACTTTAGGGAAATAAGATTCACTATTTTC
65 GTAACTTTAAGGAAATAAGATTCGCTATCTTC
* * *
8348979 AATCTGCTCCACTGCAACTTTAGAGAGATAAGATTTGTAACTTGTAGCTTTAATCTATTCCACTG
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTG
* *
8349044 CAACTTCAAGGAAATAAGATTCGCTATCTTC
66 TAACTTTAAGGAAATAAGATTCGCTATCTTC
* * * *
8349075 AATCTGCTCCATTGTAACTTC-TGG-G---AGA----TAACTTGTAGATTTAATCTG-TCCTACT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCC-ACT
* * * *
8349130 GCAACTTTAGGGAAATAAGATTTGCTATATTC
65 GTAACTTTAAGGAAATAAGATTCGCTATCTTC
* * * *
8349162 AATCTACTCCACTGTAACTTCAGGGAGATAAAATTTG-----TG--GCTTTAATCTGCTCCACTG
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTG
*
8349220 TAACTTTAAGGAGATAAGATTC
66 TAACTTTAAGGAAATAAGATTC
8349242 ACCACGGTGA
Statistics
Matches: 485, Mismatches: 53, Indels: 33
0.85 0.09 0.06
Matches are distributed among these distances:
86 3 0.01
87 68 0.14
88 2 0.00
89 33 0.07
90 3 0.01
91 5 0.01
92 2 0.00
94 1 0.00
95 1 0.00
96 366 0.75
97 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.36
Consensus pattern (96 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTG
TAACTTTAAGGAAATAAGATTCGCTATCTTC
Found at i:8348818 original size:45 final size:45
Alignment explanation
Indices: 8348646--8349241 Score: 237
Period size: 45 Copynumber: 12.8 Consensus size: 45
8348636 TTGTAGCTTT
* * * * *
8348646 AATCTGTTCCACTGTAACTTCAGGGAAATAAGATTCATTATCTTC
1 AATCTGCTCCACTGTAATTTCAGGGAGATAAGATTCGTTATTTTC
* * * * * *
8348691 AATCTGCTTCGCTGCAACTTCAGGGAGATAAGATTTGTAATTTGTAGC
1 AATCTGCTCCACTGTAATTTCAGGGAGATAAGATTCGTTATTT-T--C
* * *
8348739 TTTAATCTGTTCCACTGTAACTTT-AAGGAAATAAGATTCGTTATTTTC
1 ---AATCTGCTCCACTGTAA-TTTCAGGGAGATAAGATTCGTTATTTTC
* * * *
8348787 AATCAGCTCCACTGTAATTTCAGGGAGATAAGATTTGTAACTTGTAACTTT
1 AATCTGCTCCACTGTAATTTCAGGGAGATAAGATTCGTTA--T-T---TTC
* * * *
8348838 AATCTGTTCCACTGTAACTTT-AAGGAAATAAGATTCGTTATCTTC
1 AATCTGCTCCACTGTAA-TTTCAGGGAGATAAGATTCGTTATTTTC
* * * * *
8348883 AAT-TAGCTCCACTGCAATTTCAGAGAGATAAGATTTGTAACTTGTAGCTTT
1 AATCT-GCTCCACTGTAATTTCAGGGAGATAAGATTCGTTA--T-T---TTC
* * * **
8348934 AATCTGTTCCACTGCAACTTT-AGGGAAATAAGATTCACTATTTTC
1 AATCTGCTCCACTGTAA-TTTCAGGGAGATAAGATTCGTTATTTTC
* * * * *
8348979 AATCTGCTCCACTGCAACTTT-AGAGAGATAAGATTTGTAACTTGTAGCTTT
1 AATCTGCTCCACTGTAA-TTTCAGGGAGATAAGATTCGTTA--T-T---TTC
** * * * * * *
8349030 AATCTATTCCACTGCAACTTCAAGGAAATAAGATTCGCTATCTTC
1 AATCTGCTCCACTGTAATTTCAGGGAGATAAGATTCGTTATTTTC
* * * * *
8349075 AATCTGCTCCATTGTAACTTCTGGGAGATAA-CTT-G-TAGATTT-
1 AATCTGCTCCACTGTAATTTCAGGGAGATAAGATTCGTTA-TTTTC
* * * * *
8349117 AATCTG-TCCTACTGCAACTTT-AGGGAAATAAGATTTGCTATATTC
1 AATCTGCTCC-ACTGTAA-TTTCAGGGAGATAAGATTCGTTATTTTC
* * * * ***
8349162 AATCTACTCCACTGTAACTTCAGGGAGATAAAATTTGTGGCTTT-
1 AATCTGCTCCACTGTAATTTCAGGGAGATAAGATTCGTTATTTTC
*
8349206 AATCTGCTCCACTGTAACTTT-AAGGAGATAAGATTC
1 AATCTGCTCCACTGTAA-TTTCAGGGAGATAAGATTC
8349242 ACCACGGTGA
Statistics
Matches: 407, Mismatches: 102, Indels: 85
0.69 0.17 0.14
Matches are distributed among these distances:
41 3 0.01
42 21 0.05
43 7 0.02
44 42 0.10
45 185 0.45
46 4 0.01
47 3 0.01
48 5 0.01
49 3 0.01
50 3 0.01
51 122 0.30
52 9 0.02
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (45 bp):
AATCTGCTCCACTGTAATTTCAGGGAGATAAGATTCGTTATTTTC
Found at i:8349163 original size:87 final size:86
Alignment explanation
Indices: 8349016--8349241 Score: 290
Period size: 87 Copynumber: 2.6 Consensus size: 86
8349006 ATAAGATTTG
* * * *
8349016 TAACTTGTAGCTTTAATCTATTCCACTGCAACTTCAAGGAAATAAGATTCGCTATCTTCAATCTG
1 TAACTTGTAGCTTTAATCT-GTCCACTGCAACTTTAAGGAAATAAGATTCGCTATATTCAATCTA
* *
8349081 CTCCATTGTAACTTCTGGGAGA
65 CTCCACTGTAACTTCAGGGAGA
* * *
8349103 TAACTTGTAGATTTAATCTGTCCTACTGCAACTTTAGGGAAATAAGATTTGCTATATTCAATCTA
1 TAACTTGTAGCTTTAATCTGTCC-ACTGCAACTTTAAGGAAATAAGATTCGCTATATTCAATCTA
8349168 CTCCACTGTAACTTCAGGGAGA
65 CTCCACTGTAACTTCAGGGAGA
* * * *
8349190 TAAAATTTGTGGCTTTAATCTGCTCCACTGTAACTTTAAGGAGATAAGATTC
1 T--AACTTGTAGCTTTAATCTG-TCCACTGCAACTTTAAGGAAATAAGATTC
8349242 ACCACGGTGA
Statistics
Matches: 119, Mismatches: 16, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
86 3 0.03
87 75 0.63
89 38 0.32
90 3 0.03
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (86 bp):
TAACTTGTAGCTTTAATCTGTCCACTGCAACTTTAAGGAAATAAGATTCGCTATATTCAATCTAC
TCCACTGTAACTTCAGGGAGA
Found at i:8353125 original size:19 final size:21
Alignment explanation
Indices: 8353101--8353145 Score: 62
Period size: 19 Copynumber: 2.3 Consensus size: 21
8353091 TTATAGAATT
8353101 TAATGCAT-ATG-ATGAAATG
1 TAATGCATGATGTATGAAATG
8353120 TAATGC-TGATGTATGAAATG
1 TAATGCATGATGTATGAAATG
8353140 -AATGCA
1 TAATGCA
8353146 AAAAGAGGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 1 0.04
19 14 0.61
20 8 0.35
ACGTcount: A:0.40, C:0.07, G:0.22, T:0.31
Consensus pattern (21 bp):
TAATGCATGATGTATGAAATG
Found at i:8356035 original size:391 final size:391
Alignment explanation
Indices: 8355307--8356084 Score: 1288
Period size: 391 Copynumber: 2.0 Consensus size: 391
8355297 AAGGAATTAT
* * *
8355307 TTTTCCATAGCAAGCTATCTATTTAGCACTAAATGTGAATCAACACCCTTTTCGATAATGAAAAT
1 TTTTCCATAGCAAACTATCTATTTAGCACTAAACGTGAATCAACACCCTTTCCGATAATGAAAAT
* *
8355372 GCAATGCAATCACAACCAAAACAAAACGAAACAAGTCAATATATTTCATACAAATCTAGAATTCA
66 ACAATGCAATCACAACCAAAACAAAACGAAACAAGTCAATATATTTCATAAAAATCTAGAATTCA
8355437 AAGCAAGAAATAAGAAATAAATAGAGCAACTATTCGGGTGACCACTAGGGGTTTAGTAAGGCTCT
131 AAGCAAGAAATAAGAAATAAATAGAGCAACTATTCGGGTGACCACTAGGGGTTTAGTAAGGCTCT
* * *
8355502 ACCTAGGATAGGTTCTTAGGGCTCATTATATGTGGTTCGGTTCTAAAGTAAGGGTACCTGAACCG
196 ACCTAGGATAGGTTATTAGGGCTCATTATATGTGGTTCGGTTCTAAAGTAAAGGTACCTGAACCA
* *
8355567 GCAGATTTCTCGATCCTCACCGATTATAGGCTCATACGGTACCGAGTTTAGCTCAGAGGAATACA
261 GCAGATTCCTCGATCCTCACCAATTATAGGCTCATACGGTACCGAGTTTAGCTCAGAGGAATACA
* *
8355632 TTTCCCTATGGCTATAC-GAAGATGAAAATCTCACGAAAACATAGGTATAAATGTACCTTGAATT
326 TTTCCCTATGGCTATACAG-AGATGAAAATCTCACGAAAACATAGGTACAAATGTACCCTGAATT
8355696 CA
390 CA
* * * *
8355698 TTTTCCATGGCAAACTCTCTATTTAGCACTGAACGTGAATCAACACCCTTTCCTATAATGAAAAT
1 TTTTCCATAGCAAACTATCTATTTAGCACTAAACGTGAATCAACACCCTTTCCGATAATGAAAAT
* *
8355763 ACAATGCAATCACAACCAAAACAAAATGAAACAAGTCAGTATATTTCATAAAAATCTAGAATTCA
66 ACAATGCAATCACAACCAAAACAAAACGAAACAAGTCAATATATTTCATAAAAATCTAGAATTCA
* * * *
8355828 AAGCAAGAAATAAGAAATAAATAGAGCACCTATTCTGGTGACCACTAGGGGTTTGGTATGGCTCT
131 AAGCAAGAAATAAGAAATAAATAGAGCAACTATTCGGGTGACCACTAGGGGTTTAGTAAGGCTCT
*
8355893 ACTTAGGATAGGTTATTAGGGCTCATTATATGTGGTTCGGTTCTAAAGTAAAGGTACCTGAACCA
196 ACCTAGGATAGGTTATTAGGGCTCATTATATGTGGTTCGGTTCTAAAGTAAAGGTACCTGAACCA
* *
8355958 GCAGATTCCTCGATCCTCACCAATTATAGGCTCATACGGTACCGAGTTTAGCTTAGGGGAATACA
261 GCAGATTCCTCGATCCTCACCAATTATAGGCTCATACGGTACCGAGTTTAGCTCAGAGGAATACA
* * *
8356023 TTTCCTTATGGCTATACAGAGATGAAAATCTCACGAAGACATAGGTACAGATGTACCCTGAA
326 TTTCCCTATGGCTATACAGAGATGAAAATCTCACGAAAACATAGGTACAAATGTACCCTGAA
8356085 AGAGATCCAC
Statistics
Matches: 358, Mismatches: 28, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
391 357 1.00
392 1 0.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (391 bp):
TTTTCCATAGCAAACTATCTATTTAGCACTAAACGTGAATCAACACCCTTTCCGATAATGAAAAT
ACAATGCAATCACAACCAAAACAAAACGAAACAAGTCAATATATTTCATAAAAATCTAGAATTCA
AAGCAAGAAATAAGAAATAAATAGAGCAACTATTCGGGTGACCACTAGGGGTTTAGTAAGGCTCT
ACCTAGGATAGGTTATTAGGGCTCATTATATGTGGTTCGGTTCTAAAGTAAAGGTACCTGAACCA
GCAGATTCCTCGATCCTCACCAATTATAGGCTCATACGGTACCGAGTTTAGCTCAGAGGAATACA
TTTCCCTATGGCTATACAGAGATGAAAATCTCACGAAAACATAGGTACAAATGTACCCTGAATTC
A
Found at i:8357409 original size:4 final size:4
Alignment explanation
Indices: 8357402--8357472 Score: 58
Period size: 4 Copynumber: 17.8 Consensus size: 4
8357392 AAAAAGGAGT
* * *
8357402 AATA AATA AATA ACTA AATA AATA AATA GAT- AAT- AATGAA AATA AAAA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AAT--A AATA AATA
*
8357450 AATA GAT- AATAA AATA AATA AAT
1 AATA AATA AAT-A AATA AATA AAT
8357473 GCCTGATGAA
Statistics
Matches: 54, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
3 7 0.13
4 41 0.76
5 3 0.06
6 3 0.06
ACGTcount: A:0.70, C:0.01, G:0.04, T:0.24
Consensus pattern (4 bp):
AATA
Found at i:8357427 original size:20 final size:19
Alignment explanation
Indices: 8357402--8357472 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 19
8357392 AAAAAGGAGT
8357402 AATAAATAAATAACTAA-ATA
1 AATAAATAAATAA-TAATA-A
*
8357422 AATAAATAGATAATAATGAA
1 AATAAATAAATAATAAT-AA
*
8357442 AATAAAAAAATAGATAATAA
1 AATAAATAAATA-ATAATAA
8357462 AATAAATAAAT
1 AATAAATAAAT
8357473 GCCTGATGAA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
19 3 0.07
20 35 0.80
21 6 0.14
ACGTcount: A:0.70, C:0.01, G:0.04, T:0.24
Consensus pattern (19 bp):
AATAAATAAATAATAATAA
Found at i:8357429 original size:24 final size:23
Alignment explanation
Indices: 8357402--8357472 Score: 67
Period size: 24 Copynumber: 3.1 Consensus size: 23
8357392 AAAAAGGAGT
8357402 AATAAATAAATAACTAAATAAATA
1 AATAAATAAATAA-TAAATAAATA
* *
8357426 AATAGAT-AATAAT-GA-AAATA
1 AATAAATAAATAATAAATAAATA
* *
8357446 AAAAAATAGATAATAAAATAAATA
1 AATAAATAAATAAT-AAATAAATA
8357470 AAT
1 AAT
8357473 GCCTGATGAA
Statistics
Matches: 36, Mismatches: 7, Indels: 8
0.71 0.14 0.16
Matches are distributed among these distances:
20 10 0.28
21 6 0.17
22 1 0.03
23 6 0.17
24 13 0.36
ACGTcount: A:0.70, C:0.01, G:0.04, T:0.24
Consensus pattern (23 bp):
AATAAATAAATAATAAATAAATA
Found at i:8366261 original size:39 final size:39
Alignment explanation
Indices: 8366217--8366344 Score: 177
Period size: 39 Copynumber: 3.3 Consensus size: 39
8366207 TATGAGATTG
8366217 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGAA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGAA
*
8366256 AAAATATCCGGACATGAGATCCGCAGGCTATATGCT-AGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGA-A
* * ** * *
8366295 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGTTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGAA
8366334 AAAATATCCGG
1 AAAATATCCGG
8366345 GTTAAAGACC
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
38 1 0.01
39 77 0.99
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGAA
Found at i:8366358 original size:78 final size:76
Alignment explanation
Indices: 8366216--8366370 Score: 186
Period size: 78 Copynumber: 2.0 Consensus size: 76
8366206 GTATGAGATT
* * *
8366216 GAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGAAAAAATATCCGGACATGAGATCCGCA
1 GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGAAAAAATATCCGGACATAAGACCCGCA
*
8366281 GGCTATATGCTA
66 GGCT-TACGCTA
* * * * **
8366293 GAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGTTGGAAAAATATCCGG-GTTAAAGACCCG
1 GAAA-ATATCCGGACATGAGGTCCGCAGGCTACATGCTGAAAAAATATCCGGACAT-AAGACCCG
8366357 CAGGCTTACGCTA
64 CAGGCTTACGCTA
8366370 G
1 G
8366371 TAATGTATTC
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
77 12 0.18
78 54 0.82
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.21
Consensus pattern (76 bp):
GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGAAAAAATATCCGGACATAAGACCCGCA
GGCTTACGCTA
Found at i:8368250 original size:28 final size:29
Alignment explanation
Indices: 8368219--8368278 Score: 68
Period size: 29 Copynumber: 2.1 Consensus size: 29
8368209 GATTTTTAGT
*
8368219 AAAAATGCATATT-AGGGATTAAATTGAG
1 AAAAATGCAAATTGAGGGATTAAATTGAG
* * * *
8368247 AAAAGTGTAAATTGAGGGGTTAAATTGTG
1 AAAAATGCAAATTGAGGGATTAAATTGAG
8368276 AAA
1 AAA
8368279 TAGATAATAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 10 0.38
29 16 0.62
ACGTcount: A:0.45, C:0.02, G:0.25, T:0.28
Consensus pattern (29 bp):
AAAAATGCAAATTGAGGGATTAAATTGAG
Found at i:8375161 original size:19 final size:22
Alignment explanation
Indices: 8375122--8375162 Score: 61
Period size: 19 Copynumber: 2.0 Consensus size: 22
8375112 CTTATTTCTA
8375122 TTATTACTCTTAGTATATTATT
1 TTATTACTCTTAGTATATTATT
8375144 TTATT-CTCTTA-T-TATTATT
1 TTATTACTCTTAGTATATTATT
8375163 GCTTTCTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.37
20 1 0.05
21 6 0.32
22 5 0.26
ACGTcount: A:0.24, C:0.10, G:0.02, T:0.63
Consensus pattern (22 bp):
TTATTACTCTTAGTATATTATT
Found at i:8376735 original size:25 final size:25
Alignment explanation
Indices: 8376671--8376728 Score: 107
Period size: 25 Copynumber: 2.3 Consensus size: 25
8376661 CTTTTCATTC
8376671 CCATATTCTCTGTTTCTTCTTGCTA
1 CCATATTCTCTGTTTCTTCTTGCTA
*
8376696 CCATATTCTTTGTTTCTTCTTGCTA
1 CCATATTCTCTGTTTCTTCTTGCTA
8376721 CCATATTC
1 CCATATTC
8376729 ACAGTTTGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.14, C:0.28, G:0.07, T:0.52
Consensus pattern (25 bp):
CCATATTCTCTGTTTCTTCTTGCTA
Found at i:8381326 original size:32 final size:32
Alignment explanation
Indices: 8381290--8381445 Score: 258
Period size: 32 Copynumber: 4.9 Consensus size: 32
8381280 ACTATGCTAG
8381290 TTTTTTATATGTAAAACTAATGTATGATCTAC
1 TTTTTTATATGTAAAACTAATGTATGATCTAC
* *
8381322 TTTTTCATATGCAAAACTAATGTATGATCTAC
1 TTTTTTATATGTAAAACTAATGTATGATCTAC
* *
8381354 TTTTTTATATGTGAACCTAATGTATGATCTAC
1 TTTTTTATATGTAAAACTAATGTATGATCTAC
*
8381386 TTTTTTATATGCAAAACTAATGTATGATCTAC
1 TTTTTTATATGTAAAACTAATGTATGATCTAC
*
8381418 TTTTTTATATGTAAACCTAATGTATGAT
1 TTTTTTATATGTAAAACTAATGTATGAT
8381446 ATTTTTTATG
Statistics
Matches: 113, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 113 1.00
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.46
Consensus pattern (32 bp):
TTTTTTATATGTAAAACTAATGTATGATCTAC
Found at i:8381396 original size:64 final size:64
Alignment explanation
Indices: 8381290--8381445 Score: 285
Period size: 64 Copynumber: 2.4 Consensus size: 64
8381280 ACTATGCTAG
*
8381290 TTTTTTATATGTAAAACTAATGTATGATCTACTTTTTCATATGCAAAACTAATGTATGATCTAC
1 TTTTTTATATGTAAACCTAATGTATGATCTACTTTTTCATATGCAAAACTAATGTATGATCTAC
* *
8381354 TTTTTTATATGTGAACCTAATGTATGATCTACTTTTTTATATGCAAAACTAATGTATGATCTAC
1 TTTTTTATATGTAAACCTAATGTATGATCTACTTTTTCATATGCAAAACTAATGTATGATCTAC
8381418 TTTTTTATATGTAAACCTAATGTATGAT
1 TTTTTTATATGTAAACCTAATGTATGAT
8381446 ATTTTTTATG
Statistics
Matches: 88, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
64 88 1.00
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.46
Consensus pattern (64 bp):
TTTTTTATATGTAAACCTAATGTATGATCTACTTTTTCATATGCAAAACTAATGTATGATCTAC
Found at i:8383502 original size:21 final size:21
Alignment explanation
Indices: 8383450--8383504 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
8383440 ACCGCTGTTT
** *
8383450 CTAATCTCATAGCTACAGTAT
1 CTAATCTCACCGCTACAGTAA
*
8383471 CCAATCTCACCGCTACAGTAA
1 CTAATCTCACCGCTACAGTAA
8383492 CTAATCTCACCGC
1 CTAATCTCACCGC
8383505 CACCACTGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.31, C:0.35, G:0.09, T:0.25
Consensus pattern (21 bp):
CTAATCTCACCGCTACAGTAA
Found at i:8384108 original size:17 final size:18
Alignment explanation
Indices: 8384081--8384115 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
8384071 CATTGAGTCC
8384081 GATTATTTTTATGTTTAT
1 GATTATTTTTATGTTTAT
*
8384099 GATT-TTTTTATTTTTAT
1 GATTATTTTTATGTTTAT
8384116 CTTGTATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.20, C:0.00, G:0.09, T:0.71
Consensus pattern (18 bp):
GATTATTTTTATGTTTAT
Found at i:8384149 original size:7 final size:6
Alignment explanation
Indices: 8384083--8384163 Score: 76
Period size: 6 Copynumber: 13.7 Consensus size: 6
8384073 TTGAGTCCGA
* ** *
8384083 TTATTT TTATGT TTATGA TT-TTT TTATTT TTATCTT GTA-TT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTAT-TT TTATTT TTATTT
* * *
8384130 TCATTT TTATTT TTAGTT TTATTT TTCTTT TTAT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTAT
8384164 GTCTATTTTG
Statistics
Matches: 60, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
5 7 0.12
6 49 0.82
7 4 0.07
ACGTcount: A:0.16, C:0.04, G:0.05, T:0.75
Consensus pattern (6 bp):
TTATTT
Found at i:8388908 original size:33 final size:33
Alignment explanation
Indices: 8388829--8388896 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
8388819 AAATAGGACT
8388829 TGAAATCATGATATCTGATAGTATATTACTATA
1 TGAAATCATGATATCTGATAGTATATTACTATA
*
8388862 TGAAATCATGATATCTTATAGTATATTACTATA
1 TGAAATCATGATATCTGATAGTATATTACTATA
8388895 TG
1 TG
8388897 TAATATGGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.41
Consensus pattern (33 bp):
TGAAATCATGATATCTGATAGTATATTACTATA
Found at i:8389333 original size:18 final size:18
Alignment explanation
Indices: 8389291--8389334 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
8389281 GAATTTGCAT
*
8389291 ATATGTATATGTATATGT
1 ATATGTATATGTATATGA
*
8389309 ATATGTATATGTATCTGA
1 ATATGTATATGTATATGA
*
8389327 ATTTGTAT
1 ATATGTAT
8389335 TTGTTTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.32, C:0.02, G:0.16, T:0.50
Consensus pattern (18 bp):
ATATGTATATGTATATGA
Found at i:8389338 original size:6 final size:6
Alignment explanation
Indices: 8389290--8389322 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
8389280 TGAATTTGCA
8389290 TATATG TATATG TATATG TATATG TATATG TAT
1 TATATG TATATG TATATG TATATG TATATG TAT
8389323 CTGAATTTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (6 bp):
TATATG
Found at i:8405350 original size:20 final size:20
Alignment explanation
Indices: 8405325--8405363 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8405315 TAAAAAATAG
* *
8405325 TTTTTTGACTTTTTTGTTAT
1 TTTTTTCACTATTTTGTTAT
8405345 TTTTTTCACTATTTTGTTA
1 TTTTTTCACTATTTTGTTA
8405364 CCATTTCACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.08, G:0.08, T:0.72
Consensus pattern (20 bp):
TTTTTTCACTATTTTGTTAT
Found at i:8405436 original size:23 final size:22
Alignment explanation
Indices: 8405381--8405440 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
8405371 ACTATTATAA
*
8405381 TGTTACTATTTTGTTGTTATTG
1 TGTTACTATTTTATTGTTATTG
* * *
8405403 TATAACTTATTTTATTGTTAATTT
1 TGTTAC-TATTTTATTGTT-ATTG
8405427 TGTTACTATTTTAT
1 TGTTACTATTTTAT
8405441 AGGCATTTAC
Statistics
Matches: 30, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
22 4 0.13
23 19 0.63
24 7 0.23
ACGTcount: A:0.22, C:0.05, G:0.10, T:0.63
Consensus pattern (22 bp):
TGTTACTATTTTATTGTTATTG
Found at i:8405554 original size:18 final size:18
Alignment explanation
Indices: 8405533--8405584 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
8405523 GAAATATTTA
*
8405533 TTTTAATAT-TTTTAGTAT
1 TTTTAATATATTATA-TAT
*
8405551 TTTTGATATATTATATAT
1 TTTTAATATATTATATAT
*
8405569 TTTTAA-AAATTATATA
1 TTTTAATATATTATATA
8405585 AAAAATTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
17 9 0.31
18 16 0.55
19 4 0.14
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.60
Consensus pattern (18 bp):
TTTTAATATATTATATAT
Found at i:8407303 original size:138 final size:137
Alignment explanation
Indices: 8407062--8407309 Score: 331
Period size: 138 Copynumber: 1.8 Consensus size: 137
8407052 AATAGTGTAA
* * *
8407062 TGTACATTCTTTTATTAATGATATGCAACCTAAACCTTAAACGTGAAACTAATTTTATGGTAGAA
1 TGTACATTCTTTTATTAATGATATGCAACCTAAACCTTAAACGTGAAACTAACTCTATGATAGAA
*
8407127 TATAATATATACAATTAACATTATGAAATTAAGATAGATTATTAAAACATGTATCCATGTATATC
66 TATAATATATACAATTAACATTATGAAATGAAGATAGATTATTAAAACATGTATCCATGTATATC
8407192 ACTTTGT
131 ACTTTGT
* * *
8407199 TGTACATT-TTTATATTAATGATATGTAAGCTTAAACAC-TAAACGTGTAACTAACTCTATGATA
1 TGTACATTCTTT-TATTAATGATATGCAA-CCTAAAC-CTTAAACGTGAAACTAACTCTATGATA
* * ** *
8407262 GATTATAATATATATAATTAGTATTAT-ATAATGAAGTTAGATTATTAA
63 GAATATAATATATACAATTAACATTATGA-AATGAAGATAGATTATTAA
8407310 TTATATGTAA
Statistics
Matches: 95, Mismatches: 12, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
136 3 0.03
137 24 0.25
138 67 0.71
139 1 0.01
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.39
Consensus pattern (137 bp):
TGTACATTCTTTTATTAATGATATGCAACCTAAACCTTAAACGTGAAACTAACTCTATGATAGAA
TATAATATATACAATTAACATTATGAAATGAAGATAGATTATTAAAACATGTATCCATGTATATC
ACTTTGT
Found at i:8407307 original size:21 final size:20
Alignment explanation
Indices: 8407260--8407308 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 20
8407250 AACTCTATGA
*
8407260 TAGATTATAATATATATAAT
1 TAGATTATTATATATATAAT
8407280 TAG--TATTATATA-ATGAAGT
1 TAGATTATTATATATAT-AA-T
8407299 TAGATTATTA
1 TAGATTATTA
8407309 ATTATATGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
17 2 0.08
18 10 0.42
19 4 0.17
20 3 0.12
21 5 0.21
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (20 bp):
TAGATTATTATATATATAAT
Found at i:8407881 original size:23 final size:23
Alignment explanation
Indices: 8407851--8407897 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
8407841 TACCTCCACT
8407851 ACCTTAGCTTGCCAAAACTAAGG
1 ACCTTAGCTTGCCAAAACTAAGG
8407874 ACCTTAGCTTGCCAAAACTAAGG
1 ACCTTAGCTTGCCAAAACTAAGG
8407897 A
1 A
8407898 TTTCTCAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.21
Consensus pattern (23 bp):
ACCTTAGCTTGCCAAAACTAAGG
Found at i:8414647 original size:26 final size:26
Alignment explanation
Indices: 8414617--8414668 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
8414607 TCACAGATAG
8414617 GCCATACCAATTTTAAGTTCATTCTC
1 GCCATACCAATTTTAAGTTCATTCTC
8414643 GCCATACCAATTTTAAGTTCATTCTC
1 GCCATACCAATTTTAAGTTCATTCTC
8414669 ACCTTGATGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.08, T:0.38
Consensus pattern (26 bp):
GCCATACCAATTTTAAGTTCATTCTC
Found at i:8419852 original size:21 final size:22
Alignment explanation
Indices: 8419809--8419852 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
8419799 TCATCTACTC
* *
8419809 AGGGTAATTATAATCCACGACA
1 AGGGTAATTATAATCAACAACA
*
8419831 AGGG-AATTATACTCAACAACA
1 AGGGTAATTATAATCAACAACA
8419852 A
1 A
8419853 CAGAACTACA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.45, C:0.18, G:0.16, T:0.20
Consensus pattern (22 bp):
AGGGTAATTATAATCAACAACA
Found at i:8420441 original size:21 final size:21
Alignment explanation
Indices: 8420415--8420456 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
8420405 AATCGGATGT
8420415 CATTCCACTTGTACCTTTTCC
1 CATTCCACTTGTACCTTTTCC
8420436 CATTCCACTTGTACCTTTTCC
1 CATTCCACTTGTACCTTTTCC
8420457 ATAGAGATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.38, G:0.05, T:0.43
Consensus pattern (21 bp):
CATTCCACTTGTACCTTTTCC
Found at i:8427723 original size:27 final size:26
Alignment explanation
Indices: 8427675--8427726 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
8427665 GCGAGGCTGC
*
8427675 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
8427701 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
8427727 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:8428410 original size:27 final size:27
Alignment explanation
Indices: 8428380--8428551 Score: 161
Period size: 27 Copynumber: 6.4 Consensus size: 27
8428370 AGGGCAAAAT
* * *
8428380 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* *
8428407 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* *
8428434 AGT-ATTTCTACCCTACATGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
*
8428461 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
** *
8428488 GGTAATTTTA-CAAACCAGGGGTATTTT
1 GGTAATTTTACCCTA-CAGGGGTATTTC
* ** *
8428515 AGTAATTTTA-CAAACTAGGGGTATTTT
1 GGTAATTTTACCCTAC-AGGGGTATTTC
8428542 GGTAATTTTA
1 GGTAATTTTA
8428552 TTGATCGAGG
Statistics
Matches: 123, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
26 6 0.05
27 114 0.93
28 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAGGGGTATTTC
Found at i:8428563 original size:27 final size:27
Alignment explanation
Indices: 8428479--8428672 Score: 108
Period size: 27 Copynumber: 7.2 Consensus size: 27
8428469 TACCCTACAG
* * *
8428479 GGGTATTTCGGTAATTTTACAAA-CCA
1 GGGTATTTCAGTAATTTTATAAATCGA
* * *
8428505 GGGGTATTTTAGTAATTTTACAAA-CTA
1 -GGGTATTTCAGTAATTTTATAAATCGA
** **
8428532 GGGGTATTTTGGTAATTTTATTGATCGA
1 -GGGTATTTCAGTAATTTTATAAATCGA
*
8428560 GGGTATTTCAGTAATTTTGTAAATCGA
1 GGGTATTTCAGTAATTTTATAAATCGA
*** * * *
8428587 GGGTAAAACGGTAATTCTGTAAATCGA
1 GGGTATTTCAGTAATTTTATAAATCGA
** * *
8428614 GGGTAAAATGA-TAATTCTATAAATCGA
1 GGGT-ATTTCAGTAATTTTATAAATCGA
** *
8428641 GGGTAAAAT-AGTAATTCTATAAATCGA
1 GGGT-ATTTCAGTAATTTTATAAATCGA
8428668 GGGTA
1 GGGTA
8428673 AAATGGTAAT
Statistics
Matches: 142, Mismatches: 22, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
26 2 0.01
27 135 0.95
28 5 0.04
ACGTcount: A:0.34, C:0.08, G:0.23, T:0.35
Consensus pattern (27 bp):
GGGTATTTCAGTAATTTTATAAATCGA
Found at i:8428673 original size:27 final size:27
Alignment explanation
Indices: 8428570--8428736 Score: 246
Period size: 27 Copynumber: 6.2 Consensus size: 27
8428560 GGGTATTTCA
* *
8428570 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
8428597 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* * *
8428624 ATAATTCTATAAATCGAGGGTAAAATA
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
8428651 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTCTGTAAATCGAGGGTAAAATG
*
8428678 GTAATTCTGTAAATCGAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
* *
8428705 GTAATTCTGTAAA-CAAGGGTAAAACG
1 GTAATTCTGTAAATCGAGGGTAAAATG
8428731 GTAATT
1 GTAATT
8428737 TTACAAGTTG
Statistics
Matches: 130, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
26 18 0.14
27 112 0.86
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
GTAATTCTGTAAATCGAGGGTAAAATG
Found at i:8439614 original size:18 final size:18
Alignment explanation
Indices: 8439593--8439644 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
8439583 AGGAAACTGA
8439593 TGTTGTCGAAGAAGAAGT
1 TGTTGTCGAAGAAGAAGT
**
8439611 TGTTGTCGAAGCGGAAGT
1 TGTTGTCGAAGAAGAAGT
*
8439629 TGTTGCCGAAGAAGAA
1 TGTTGTCGAAGAAGAA
8439645 AAAGTTGCTG
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.31, C:0.10, G:0.35, T:0.25
Consensus pattern (18 bp):
TGTTGTCGAAGAAGAAGT
Found at i:8449677 original size:17 final size:18
Alignment explanation
Indices: 8449657--8449690 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8449647 TAAAAGAGTT
*
8449657 AATTA-GGATTAAATTGG
1 AATTAGGGAATAAATTGG
8449674 AATTAGGGAATAAATTG
1 AATTAGGGAATAAATTG
8449691 AATAAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.44, C:0.00, G:0.24, T:0.32
Consensus pattern (18 bp):
AATTAGGGAATAAATTGG
Found at i:8450232 original size:27 final size:27
Alignment explanation
Indices: 8450173--8450244 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
8450163 AATGCCTTAT
*
8450173 TGGTGTGCTTGGGAGGATATGATATAC
1 TGGTGTGTTTGGGAGGATATGATATAC
** *
8450200 CAGTGTGTTTGGGAGGCTAT-ATTATAC
1 TGGTGTGTTTGGGAGGATATGA-TATAC
8450227 TGGTGTGTTAT-GGAGGAT
1 TGGTGTGTT-TGGGAGGAT
8450245 TTATATTATT
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 1 0.03
27 34 0.94
28 1 0.03
ACGTcount: A:0.21, C:0.07, G:0.36, T:0.36
Consensus pattern (27 bp):
TGGTGTGTTTGGGAGGATATGATATAC
Found at i:8461930 original size:18 final size:19
Alignment explanation
Indices: 8461886--8461930 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
8461876 CAGAATTTAT
*
8461886 TAAAAATTATTTAATATTA
1 TAAAAATTATTTAATATAA
*
8461905 TGAAAATTATTTAAT-TAA
1 TAAAAATTATTTAATATAA
8461923 TAAAAATT
1 TAAAAATT
8461931 TTACACGTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 9 0.39
19 14 0.61
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (19 bp):
TAAAAATTATTTAATATAA
Found at i:8464854 original size:11 final size:11
Alignment explanation
Indices: 8464847--8464888 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
8464837 TTGTTTTCTC
8464847 ACTATTTTGCT
1 ACTATTTTGCT
*
8464858 ACTATTTTACT
1 ACTATTTTGCT
* *
8464869 ATTATGTTGCT
1 ACTATTTTGCT
8464880 ACTATTTTG
1 ACTATTTTG
8464889 TTGTTATTGT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.21, C:0.14, G:0.10, T:0.55
Consensus pattern (11 bp):
ACTATTTTGCT
Found at i:8464959 original size:30 final size:30
Alignment explanation
Indices: 8464925--8464987 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
8464915 ACTTATTTTA
8464925 TTGTTAATTTTGTTCA-TATTTTAAAGACAT
1 TTGTTAATTTTGTT-ATTATTTTAAAGACAT
*
8464955 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
8464985 TTG
1 TTG
8464988 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 1 0.03
30 30 0.97
ACGTcount: A:0.27, C:0.05, G:0.13, T:0.56
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:8476952 original size:42 final size:42
Alignment explanation
Indices: 8476888--8476974 Score: 104
Period size: 42 Copynumber: 2.1 Consensus size: 42
8476878 CCTTAAACCG
* * *
8476888 TGTAACTCTTTGAGTTAGGTCACACAGCTGTGTCACAGCCCA
1 TGTAACTCTCTGAATTAGGTCACACAGCCGTGTCACAGCCCA
* * *
8476930 TGTAACTCTCTGAATT-GTGTCACACGGCCGTGTCGCAGGCCA
1 TGTAACTCTCTGAATTAG-GTCACACAGCCGTGTCACAGCCCA
8476972 TGT
1 TGT
8476975 GTTAGACAGT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
41 1 0.03
42 37 0.97
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.29
Consensus pattern (42 bp):
TGTAACTCTCTGAATTAGGTCACACAGCCGTGTCACAGCCCA
Found at i:8479911 original size:27 final size:27
Alignment explanation
Indices: 8479841--8479983 Score: 124
Period size: 27 Copynumber: 5.3 Consensus size: 27
8479831 GGCGGACTTG
* * * * *
8479841 TTGGTGTACACCATATCACCAAACTTA
1 TTGGCGTACACCATCTCGCCAGACCTA
* *
8479868 TTGGCGTACAACATCTCGCCAGACCTG
1 TTGGCGTACACCATCTCGCCAGACCTA
* * *
8479895 TTGGCGTACACCGTCTCGCCGGACATA
1 TTGGCGTACACCATCTCGCCAGACCTA
* * *
8479922 TTAGGCGTATACCATCTCGCTAGACTTA
1 TT-GGCGTACACCATCTCGCCAGACCTA
* * * *
8479950 CTGGTGTATACCATCTTGCCAGACCTA
1 TTGGCGTACACCATCTCGCCAGACCTA
8479977 TTGGCGT
1 TTGGCGT
8479984 TGTAACAGTT
Statistics
Matches: 91, Mismatches: 24, Indels: 2
0.78 0.21 0.02
Matches are distributed among these distances:
27 70 0.77
28 21 0.23
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (27 bp):
TTGGCGTACACCATCTCGCCAGACCTA
Found at i:8480701 original size:20 final size:20
Alignment explanation
Indices: 8480676--8480716 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
8480666 ACTAAAATGT
8480676 AAAATTGTGAAATTTGATGA
1 AAAATTGTGAAATTTGATGA
* *
8480696 AAAATTTTGAAATTTTATGA
1 AAAATTGTGAAATTTGATGA
8480716 A
1 A
8480717 TATATGTGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.39
Consensus pattern (20 bp):
AAAATTGTGAAATTTGATGA
Found at i:8484901 original size:19 final size:19
Alignment explanation
Indices: 8484877--8484915 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
8484867 AAAACAGACT
8484877 TGTAAATATTTATTAAAAA
1 TGTAAATATTTATTAAAAA
8484896 TGTAAATATTTATTAAAAA
1 TGTAAATATTTATTAAAAA
8484915 T
1 T
8484916 ATTTACGAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (19 bp):
TGTAAATATTTATTAAAAA
Found at i:8485160 original size:5 final size:5
Alignment explanation
Indices: 8485150--8485187 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
8485140 TGAATACTTA
8485150 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATA
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATA
8485188 ATAACTAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
ATATT
Found at i:8487941 original size:47 final size:47
Alignment explanation
Indices: 8487827--8487996 Score: 169
Period size: 45 Copynumber: 3.7 Consensus size: 47
8487817 GCCCCTAAGT
* * * *
8487827 GAACTCGGACTCAACTCAACGAGCTCGG--G-CGTTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCC--AAGC
8487873 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACATCTC-A-C
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TTCACATC-CAAGC
* *
8487920 GAACTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCATAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCA-AGC
8487965 GAACTCGGACTCAACTCAACGAGTTCGGATGC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGC
8487997 TCAACCATCC
Statistics
Matches: 105, Mismatches: 6, Indels: 24
0.78 0.04 0.18
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 2 0.02
45 29 0.28
46 27 0.26
47 29 0.28
48 2 0.02
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCACATCCAAGC
Found at i:8487996 original size:92 final size:93
Alignment explanation
Indices: 8487827--8487996 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
8487817 GCCCCTAAGT
* *
8487827 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
8487892 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
8487920 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAT-AGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
8487984 CGAGTTCGGATGC
66 CGAGTTCGGATGC
8487997 TCAACCATCC
Statistics
Matches: 74, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
92 35 0.47
93 39 0.53
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:8488449 original size:30 final size:30
Alignment explanation
Indices: 8488415--8488474 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
8488405 ATTTAATACG
8488415 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
8488445 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
8488475 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:8495502 original size:90 final size:91
Alignment explanation
Indices: 8495397--8495563 Score: 266
Period size: 91 Copynumber: 1.8 Consensus size: 91
8495387 CCCTAAGTGA
* * *
8495397 ACTCGGACTCAACTC-ACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACT-CAAC
1 ACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGG-CTCAACTCCAAC
8495460 GAGTTCGGATGCTAGTTACATCTCACG
65 GAGTTCGGATGCTAGTTACATCTCACG
* *
8495487 ACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCACAGGTGAACTCGGCTCAACTCCAACG
1 ACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGCTCAACTCCAACG
8495552 AGTTCGGATGCT
66 AGTTCGGATGCT
8495564 CAACCATCCT
Statistics
Matches: 70, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
90 22 0.31
91 48 0.69
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.22
Consensus pattern (91 bp):
ACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCACAAGTGAACTCGGCTCAACTCCAACG
AGTTCGGATGCTAGTTACATCTCACG
Found at i:8495543 original size:45 final size:45
Alignment explanation
Indices: 8495392--8495559 Score: 170
Period size: 45 Copynumber: 3.7 Consensus size: 45
8495382 CCCGCCCCTA
* * * *
8495392 AGTGAACTCGGACTCAACTC-ACGAGCTCGGGCGTTCGCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA-C
*
8495437 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTAGTT-ACATCTCAC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGA--C-A-TTCGCATC-CAC
8495486 ---G-ACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAC
8495527 AGGTGAACTCGG-CTCAACTCCAACGAGTTCGGA
1 A-GTGAACTCGGACTCAACT-CAACGAGTTCGGA
8495560 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 6, Indels: 25
0.77 0.04 0.19
Matches are distributed among these distances:
41 5 0.05
42 5 0.05
43 1 0.01
45 55 0.53
46 29 0.28
48 1 0.01
49 4 0.04
50 4 0.04
ACGTcount: A:0.27, C:0.30, G:0.23, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCAC
Found at i:8496010 original size:28 final size:29
Alignment explanation
Indices: 8495979--8496033 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
8495969 ATTTAATACG
8495979 AACTTTGGAAAAATTACAC-TTTGCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCTA
* * *
8496007 AACTTTTGCATAATTACACTTTTGCCC
1 AACTTTGGAAAAATTACACTTTTGCCC
8496034 CAGGCTCGGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 16 0.70
29 7 0.30
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36
Consensus pattern (29 bp):
AACTTTGGAAAAATTACACTTTTGCCCTA
Found at i:8498384 original size:126 final size:127
Alignment explanation
Indices: 8498235--8498487 Score: 483
Period size: 126 Copynumber: 2.0 Consensus size: 127
8498225 CTGCGGTGGT
8498235 ATCCGATGATTTTCTTTTAGTTGTAAATGAGTTACATGGCCTGGCATACAGGCGTGTAACATGGC
1 ATCCGATGATTTTCTTTTAGTTGTAAATGAGTTACATGGCCTGGCATACAGGCGTGTAACATGGC
8498300 CATGTGACCCTACTCAGAGAGCTACACGGGTGAAGACACGGGCTGGGACACGGCCGTGTGTC
66 CATGTGACCCTACTCAGAGAGCTACACGGGTGAAGACACGGGCTGGGACACGGCCGTGTGTC
8498362 ATCCGATGA-TTTC-TTTAGGTTGTAAATGAGTTACATGGCCTGGCATACAGGCGTGTAACATGG
1 ATCCGATGATTTTCTTTTA-GTTGTAAATGAGTTACATGGCCTGGCATACAGGCGTGTAACATGG
8498425 CCATGTGACCCTACTCAGAGAGCTACACGGGTGAAGACACGGGCTGGGACACGGCCGTGTGTC
65 CCATGTGACCCTACTCAGAGAGCTACACGGGTGAAGACACGGGCTGGGACACGGCCGTGTGTC
8498488 CCTAGTTCCA
Statistics
Matches: 125, Mismatches: 0, Indels: 3
0.98 0.00 0.02
Matches are distributed among these distances:
125 4 0.03
126 112 0.90
127 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.25
Consensus pattern (127 bp):
ATCCGATGATTTTCTTTTAGTTGTAAATGAGTTACATGGCCTGGCATACAGGCGTGTAACATGGC
CATGTGACCCTACTCAGAGAGCTACACGGGTGAAGACACGGGCTGGGACACGGCCGTGTGTC
Found at i:8501797 original size:20 final size:20
Alignment explanation
Indices: 8501772--8501821 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
8501762 TTAAGTAACC
8501772 ATTCATTACTTAATTATTTT
1 ATTCATTACTTAATTATTTT
8501792 ATTCATTACTTAATTATTTT
1 ATTCATTACTTAATTATTTT
*
8501812 AATCA-TACTT
1 ATTCATTACTT
8501822 TCATTAACAT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
19 5 0.17
20 24 0.83
ACGTcount: A:0.32, C:0.12, G:0.00, T:0.56
Consensus pattern (20 bp):
ATTCATTACTTAATTATTTT
Found at i:8503945 original size:63 final size:62
Alignment explanation
Indices: 8503842--8504002 Score: 216
Period size: 63 Copynumber: 2.5 Consensus size: 62
8503832 TGCACCAGGT
* **
8503842 GAATCAAATGCCTGCTTTGCAACATCCTTCTGCTCGAAGTTCTGTTCGTTGGAAGGAGGAGGA
1 GAATCAAATGCC-GCTTTGCAACATCCTTCTGCTCGAAGTTATGTTCGTTGGAACCAGGAGGA
* * *
8503905 GAATCAAATGCTCGCTTCGCAACACCCTTCTG-TTGCAAGTTATGTTCGTTGGAACCAGGAGGA
1 GAATCAAATGC-CGCTTTGCAACATCCTTCTGCTCG-AAGTTATGTTCGTTGGAACCAGGAGGA
*
8503968 GAATCAAATGCCCGCTTTGCAACATCCTTCCGCTC
1 GAATCAAATG-CCGCTTTGCAACATCCTTCTGCTC
8504003 ATAGCTGTGA
Statistics
Matches: 84, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
62 2 0.02
63 79 0.94
64 3 0.04
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.27
Consensus pattern (62 bp):
GAATCAAATGCCGCTTTGCAACATCCTTCTGCTCGAAGTTATGTTCGTTGGAACCAGGAGGA
Found at i:8504527 original size:33 final size:33
Alignment explanation
Indices: 8504490--8504578 Score: 142
Period size: 33 Copynumber: 2.7 Consensus size: 33
8504480 ACCGCCAAAA
* * *
8504490 CCATCTCTCATGCCACCACGTCCACCAAAGCCC
1 CCATCCCTCATTCCACCACGGCCACCAAAGCCC
*
8504523 CCATCCCTCATTCCACCACGGCCACCAAAGCCT
1 CCATCCCTCATTCCACCACGGCCACCAAAGCCC
8504556 CCATCCCTCATTCCACCACGGCC
1 CCATCCCTCATTCCACCACGGCC
8504579 TCCAGAATCC
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 52 1.00
ACGTcount: A:0.22, C:0.53, G:0.09, T:0.16
Consensus pattern (33 bp):
CCATCCCTCATTCCACCACGGCCACCAAAGCCC
Found at i:8507148 original size:217 final size:217
Alignment explanation
Indices: 8506881--8507296 Score: 778
Period size: 217 Copynumber: 1.9 Consensus size: 217
8506871 CTTCAAATCT
8506881 TATGAATGGTGCTGGAACGTTGTCTCCCTATGCAATTTAATAAACAATCAAAGTCATGAATAATC
1 TATGAATGGTGCTGGAACGTTGTCTCCCTATGCAATTTAATAAACAATCAAAGTCATGAATAATC
*
8506946 TTAAATTGGCAAAATGAATCATTTCCTCACCATTAAAACAAAGACAACTCTTCAAATATTGTAAT
66 TTAAATTGGCAAAATGAATCATTTCCTCACCATTAAAACAAAGAAAACTCTTCAAATATTGTAAT
8507011 GGAAGAACAATTAAGTGAGAATTAAAAAGAACAAGGCACAAAGCAATAGATTTTCAAAAAATGAT
131 GGAAGAACAATTAAGTGAGAATTAAAAAGAACAAGGCACAAAGCAATAGATTTTCAAAAAATGAT
8507076 ATTTGTTAAACACCCTTCCCCA
196 ATTTGTTAAACACCCTTCCCCA
*
8507098 TATGAATGGTGCTGGAATGTTGTCTCCCTATGCAATTTAATAAACAATCAAAGTCATGAATAATC
1 TATGAATGGTGCTGGAACGTTGTCTCCCTATGCAATTTAATAAACAATCAAAGTCATGAATAATC
*
8507163 TTAAATTGGCAAAATGAATCATTTCTTCACCATTAAAACAAAGAAAACTCTTCAAATATTGTAAT
66 TTAAATTGGCAAAATGAATCATTTCCTCACCATTAAAACAAAGAAAACTCTTCAAATATTGTAAT
* * *
8507228 GGAAGAACACTTAAGTGAGAATTAAAAAGAACAAGGCGCAAAGCAATAGATTTTCAAAAATTGAT
131 GGAAGAACAATTAAGTGAGAATTAAAAAGAACAAGGCACAAAGCAATAGATTTTCAAAAAATGAT
8507293 ATTT
196 ATTT
8507297 ATCCAACCCC
Statistics
Matches: 193, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
217 193 1.00
ACGTcount: A:0.43, C:0.15, G:0.14, T:0.28
Consensus pattern (217 bp):
TATGAATGGTGCTGGAACGTTGTCTCCCTATGCAATTTAATAAACAATCAAAGTCATGAATAATC
TTAAATTGGCAAAATGAATCATTTCCTCACCATTAAAACAAAGAAAACTCTTCAAATATTGTAAT
GGAAGAACAATTAAGTGAGAATTAAAAAGAACAAGGCACAAAGCAATAGATTTTCAAAAAATGAT
ATTTGTTAAACACCCTTCCCCA
Found at i:8511622 original size:15 final size:15
Alignment explanation
Indices: 8511602--8511633 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
8511592 AAAACAGAAA
8511602 GATAATAATGTGGTG
1 GATAATAATGTGGTG
8511617 GATAATAATGTGGTG
1 GATAATAATGTGGTG
8511632 GA
1 GA
8511634 GCCTATTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.31
Consensus pattern (15 bp):
GATAATAATGTGGTG
Found at i:8511738 original size:58 final size:59
Alignment explanation
Indices: 8511667--8511789 Score: 221
Period size: 58 Copynumber: 2.1 Consensus size: 59
8511657 GAAATTCCAT
* *
8511667 GTAATCCAGTGTTTATACTTTAACGGTTCAATGATT-AAAAATGCATTTGGATAGTTTA
1 GTAATTCAGTGTTTATACTTTAACGGTTCAATGATTAAAAAATACATTTGGATAGTTTA
8511725 GTAATTCAGTGTTTATACTTTAACGGTTCAATGATTAAAAAATACATTTGGATAGTTTA
1 GTAATTCAGTGTTTATACTTTAACGGTTCAATGATTAAAAAATACATTTGGATAGTTTA
8511784 GTAATT
1 GTAATT
8511790 AATTTAAAAT
Statistics
Matches: 62, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
58 35 0.56
59 27 0.44
ACGTcount: A:0.34, C:0.09, G:0.16, T:0.41
Consensus pattern (59 bp):
GTAATTCAGTGTTTATACTTTAACGGTTCAATGATTAAAAAATACATTTGGATAGTTTA
Found at i:8512118 original size:17 final size:18
Alignment explanation
Indices: 8512079--8512117 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
8512069 ATTACTTCTC
*
8512079 AAAAGCACTTTTGGGACA
1 AAAAGCACTTTTGAGACA
*
8512097 AAAAGCACTTTTGAGATA
1 AAAAGCACTTTTGAGACA
8512115 AAA
1 AAA
8512118 GAATTGATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.13, G:0.18, T:0.23
Consensus pattern (18 bp):
AAAAGCACTTTTGAGACA
Found at i:8515258 original size:46 final size:47
Alignment explanation
Indices: 8515198--8515286 Score: 119
Period size: 46 Copynumber: 1.9 Consensus size: 47
8515188 TAGCTTCGGC
*
8515198 TATATATAGCACTTAGTGTGTGA-A-TCATGATAGCTTCGGCTACATA
1 TATATATAGCACTTAGTGTGCGAGACTCA-GATAGCTTCGGCTACATA
* * *
8515244 TATATATGGTACTTAGTGTGCGAGACTGAGATAGCTTCGGCTA
1 TATATATAGCACTTAGTGTGCGAGACTCAGATAGCTTCGGCTA
8515287 TGAAAGGCAC
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
46 20 0.54
47 15 0.41
48 2 0.05
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.34
Consensus pattern (47 bp):
TATATATAGCACTTAGTGTGCGAGACTCAGATAGCTTCGGCTACATA
Found at i:8516078 original size:13 final size:13
Alignment explanation
Indices: 8516060--8516085 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8516050 ATATGTATTG
8516060 AACTGGTACCATT
1 AACTGGTACCATT
8516073 AACTGGTACCATT
1 AACTGGTACCATT
8516086 TTGGTTGCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (13 bp):
AACTGGTACCATT
Found at i:8517726 original size:15 final size:14
Alignment explanation
Indices: 8517686--8517775 Score: 74
Period size: 15 Copynumber: 6.1 Consensus size: 14
8517676 CTGTGCATAA
8517686 CCCTATGG-AGAACT
1 CCCTATGGCA-AACT
* *
8517700 CCTTTATAGCAAACT
1 CC-CTATGGCAAACT
8517715 CACCTATGGCAAACT
1 C-CCTATGGCAAACT
*
8517730 CCCTATGGCGAACT
1 CCCTATGGCAAACT
** *
8517744 CCTCTATGGTGAGCT
1 CC-CTATGGCAAACT
8517759 CACCTATGGCAAACT
1 C-CCTATGGCAAACT
8517774 CC
1 CC
8517776 TTTATAGAAA
Statistics
Matches: 61, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
14 17 0.28
15 41 0.67
16 3 0.05
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (14 bp):
CCCTATGGCAAACT
Found at i:8517761 original size:44 final size:44
Alignment explanation
Indices: 8517686--8517775 Score: 126
Period size: 44 Copynumber: 2.0 Consensus size: 44
8517676 CTGTGCATAA
*
8517686 CCCTATGGAGAACTCCTTTATAGCAAACTCACCTATGGCAAACT
1 CCCTATGGAGAACTCCTCTATAGCAAACTCACCTATGGCAAACT
* * ** *
8517730 CCCTATGGCGAACTCCTCTATGGTGAGCTCACCTATGGCAAACT
1 CCCTATGGAGAACTCCTCTATAGCAAACTCACCTATGGCAAACT
8517774 CC
1 CC
8517776 TTTATAGAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.27, C:0.32, G:0.17, T:0.24
Consensus pattern (44 bp):
CCCTATGGAGAACTCCTCTATAGCAAACTCACCTATGGCAAACT
Found at i:8517818 original size:14 final size:15
Alignment explanation
Indices: 8517799--8517841 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
8517789 ACTCCATGAA
8517799 GAACTCAC-TATGGC
1 GAACTCACTTATGGC
*
8517813 GAACTC-CTTTATAGC
1 GAACTCAC-TTATGGC
8517828 GAACTCACTTATGG
1 GAACTCACTTATGG
8517842 TTGATCTACC
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
13 1 0.04
14 6 0.25
15 16 0.67
16 1 0.04
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (15 bp):
GAACTCACTTATGGC
Found at i:8517835 original size:74 final size:74
Alignment explanation
Indices: 8517687--8517841 Score: 181
Period size: 74 Copynumber: 2.1 Consensus size: 74
8517677 TGTGCATAAC
* * * * *
8517687 CCTATGGAGAACTCCTTTATAGCAAACTCACCTATGGCAAACTCCCTATGGCGAACTCCTCTATG
1 CCTATGGAGAACTCCTTTATAGAAAACTCACCCATGGAAAACTCACTATGGCGAACTCCTCTATA
* *
8517752 GTGAGCTCA
66 GCGAACTCA
*
8517761 CCTATGGCA-AACTCCTTTATAGAAAACT-ACTCCAT-GAAGAACTCACTATGGCGAACTCCTTT
1 CCTATGG-AGAACTCCTTTATAGAAAACTCAC-CCATGGAA-AACTCACTATGGCGAACTCCTCT
8517823 ATAGCGAACTCA
63 ATAGCGAACTCA
*
8517835 CTTATGG
1 CCTATGG
8517842 TTGATCTACC
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
73 4 0.06
74 64 0.93
75 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (74 bp):
CCTATGGAGAACTCCTTTATAGAAAACTCACCCATGGAAAACTCACTATGGCGAACTCCTCTATA
GCGAACTCA
Found at i:8526228 original size:17 final size:19
Alignment explanation
Indices: 8526203--8526240 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
8526193 TTTTGAAATT
8526203 TTTCATATTTT-CTTAAAA
1 TTTCATATTTTGCTTAAAA
*
8526221 TTTC-TATTTTGCTTCAAA
1 TTTCATATTTTGCTTAAAA
8526239 TT
1 TT
8526241 GATCTCAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.26, C:0.13, G:0.03, T:0.58
Consensus pattern (19 bp):
TTTCATATTTTGCTTAAAA
Found at i:8528914 original size:27 final size:27
Alignment explanation
Indices: 8528873--8528925 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
8528863 AATTTGATAA
*
8528873 AATGACTGTTCTGCCCTTATGTGGCAG
1 AATGACTATTCTGCCCTTATGTGGCAG
*
8528900 AATGACTATTTTGCCCTTATGTGGCA
1 AATGACTATTCTGCCCTTATGTGGCA
8528926 TTTGCCCTTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.36
Consensus pattern (27 bp):
AATGACTATTCTGCCCTTATGTGGCAG
Found at i:8528931 original size:17 final size:17
Alignment explanation
Indices: 8528909--8528942 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
8528899 GAATGACTAT
8528909 TTTGCCCTTATGTGGCA
1 TTTGCCCTTATGTGGCA
*
8528926 TTTGCCCTTCTGTGGCA
1 TTTGCCCTTATGTGGCA
8528943 AAATGACTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.09, C:0.26, G:0.24, T:0.41
Consensus pattern (17 bp):
TTTGCCCTTATGTGGCA
Found at i:8528948 original size:44 final size:44
Alignment explanation
Indices: 8528884--8528967 Score: 141
Period size: 44 Copynumber: 1.9 Consensus size: 44
8528874 ATGACTGTTC
* *
8528884 TGCCCTTATGTGGCAGAATGACTATTTTGCCCTTATGTGGCATT
1 TGCCCTTATGTGGCAAAATGACTATTTTGCCCGTATGTGGCATT
*
8528928 TGCCCTTCTGTGGCAAAATGACTATTTTGCCCGTATGTGG
1 TGCCCTTATGTGGCAAAATGACTATTTTGCCCGTATGTGG
8528968 TAAAATGATT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.18, C:0.21, G:0.24, T:0.37
Consensus pattern (44 bp):
TGCCCTTATGTGGCAAAATGACTATTTTGCCCGTATGTGGCATT
Found at i:8529010 original size:54 final size:54
Alignment explanation
Indices: 8528926--8529209 Score: 250
Period size: 54 Copynumber: 5.3 Consensus size: 54
8528916 TTATGTGGCA
* * * *
8528926 TTTGCCCTTCTGTGGCAAAATGACTA-TTTTGCCCGTATGTGGTAAAATGATTA-T
1 TTTGCCCTTATGTGGTAAAATGA-TAGTTTTGCCCTTATGTGGTAAAATGA-CAGT
* * * **
8528980 TTTGCCCTTGTATGGTAAAATGATAGTTTTGCCCTTATGTGGCAAAATGATTGT
1 TTTGCCCTTATGTGGTAAAATGATAGTTTTGCCCTTATGTGGTAAAATGACAGT
* * * * * * ***
8529034 TCTGCCATTGTATGGTAAAATAACAGTTTTGCCCTTATGTCAAAAAATGACAGT
1 TTTGCCCTTATGTGGTAAAATGATAGTTTTGCCCTTATGTGGTAAAATGACAGT
* * *
8529088 TTTTCCCTTATGTGGTAAAATGACT-TTTTTGCCCTTGTGTGGTAAAATGACAGT
1 TTTGCCCTTATGTGGTAAAATGA-TAGTTTTGCCCTTATGTGGTAAAATGACAGT
* * * ** ** *
8529142 TTCGCCCTTATGTGGTAAAATGATTGTTTTGCCGTTACATGGTAAGCTGACCGT
1 TTTGCCCTTATGTGGTAAAATGATAGTTTTGCCCTTATGTGGTAAAATGACAGT
*
8529196 TTTGCCCCTATGTG
1 TTTGCCCTTATGTG
8529210 ATGTATGTTT
Statistics
Matches: 187, Mismatches: 39, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
53 4 0.02
54 183 0.98
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.39
Consensus pattern (54 bp):
TTTGCCCTTATGTGGTAAAATGATAGTTTTGCCCTTATGTGGTAAAATGACAGT
Found at i:8529186 original size:27 final size:27
Alignment explanation
Indices: 8528926--8529174 Score: 243
Period size: 27 Copynumber: 9.2 Consensus size: 27
8528916 TTATGTGGCA
* *
8528926 TTTGCCCTTCTGTGGCAAAATGACTA-T
1 TTTGCCCTTATGTGGTAAAATGA-TAGT
*
8528953 TTTGCCCGTATGTGGTAAAATGATTA-T
1 TTTGCCCTTATGTGGTAAAATGA-TAGT
* *
8528980 TTTGCCCTTGTATGGTAAAATGATAGT
1 TTTGCCCTTATGTGGTAAAATGATAGT
* *
8529007 TTTGCCCTTATGTGGCAAAATGATTGT
1 TTTGCCCTTATGTGGTAAAATGATAGT
* * * * * *
8529034 TCTGCCATTGTATGGTAAAATAACAGT
1 TTTGCCCTTATGTGGTAAAATGATAGT
*** *
8529061 TTTGCCCTTATGTCAAAAAATGACAGT
1 TTTGCCCTTATGTGGTAAAATGATAGT
* *
8529088 TTTTCCCTTATGTGGTAAAATGACT-TT
1 TTTGCCCTTATGTGGTAAAATGA-TAGT
* *
8529115 TTTGCCCTTGTGTGGTAAAATGACAGT
1 TTTGCCCTTATGTGGTAAAATGATAGT
* *
8529142 TTCGCCCTTATGTGGTAAAATGATTGT
1 TTTGCCCTTATGTGGTAAAATGATAGT
8529169 TTTGCC
1 TTTGCC
8529175 GTTACATGGT
Statistics
Matches: 177, Mismatches: 42, Indels: 6
0.79 0.19 0.03
Matches are distributed among these distances:
26 2 0.01
27 175 0.99
ACGTcount: A:0.25, C:0.16, G:0.20, T:0.39
Consensus pattern (27 bp):
TTTGCCCTTATGTGGTAAAATGATAGT
Found at i:8529199 original size:81 final size:81
Alignment explanation
Indices: 8528926--8529202 Score: 286
Period size: 81 Copynumber: 3.4 Consensus size: 81
8528916 TTATGTGGCA
* * * * * * *
8528926 TTTGCCCTTCTGTGGCAAAATGACTATTTTGCCCGTATGTGGTAAAATGATTA-TTTTGCCCTTG
1 TTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTGTGTGGTAAAATGA-CAGTTTTGCCCTTA
*
8528990 TATGGTAAAATGATAGT
65 TGTGGTAAAATGATAGT
* * * * * *
8529007 TTTGCCCTTATGTGGCAAAATGATTGTTCTGCCATTGTATGGTAAAATAACAGTTTTGCCCTTAT
1 TTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTGTGTGGTAAAATGACAGTTTTGCCCTTAT
*** *
8529072 GTCAAAAAATGACAGT
66 GTGGTAAAATGATAGT
* * *
8529088 TTTTCCCTTATGTGGTAAAATGACTTTTTTGCCCTTGTGTGGTAAAATGACAGTTTCGCCCTTAT
1 TTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTGTGTGGTAAAATGACAGTTTTGCCCTTAT
*
8529153 GTGGTAAAATGATTGT
66 GTGGTAAAATGATAGT
* ** ** *
8529169 TTTGCCGTTACATGGTAAGCTGACCGTTTTGCCC
1 TTTGCCCTTATGTGGTAAAATGACTGTTTTGCCC
8529203 CTATGTGATG
Statistics
Matches: 157, Mismatches: 38, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
80 1 0.01
81 156 0.99
ACGTcount: A:0.24, C:0.17, G:0.21, T:0.39
Consensus pattern (81 bp):
TTTGCCCTTATGTGGTAAAATGACTGTTTTGCCCTTGTGTGGTAAAATGACAGTTTTGCCCTTAT
GTGGTAAAATGATAGT
Found at i:8533840 original size:35 final size:35
Alignment explanation
Indices: 8533791--8533860 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
8533781 AATTATAAAG
*
8533791 TTAATTAAGTTTTAGGGACCAAATTTTGTAACACC
1 TTAATTAAGCTTTAGGGACCAAATTTTGTAACACC
8533826 TTAATTAAGCTTTAGGGACCAAATTTTGTAACACC
1 TTAATTAAGCTTTAGGGACCAAATTTTGTAACACC
8533861 CCTTTACCCG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (35 bp):
TTAATTAAGCTTTAGGGACCAAATTTTGTAACACC
Found at i:8535810 original size:25 final size:25
Alignment explanation
Indices: 8535735--8535810 Score: 68
Period size: 25 Copynumber: 3.1 Consensus size: 25
8535725 ATTCCAAAAA
* *
8535735 TAATATTATTTTAATAGTTTAATAT
1 TAATAATATTTTAATAATTTAATAT
* * *
8535760 TAA-ATATAATTTAAT-ACTT-ATCT
1 TAATA-ATATTTTAATAATTTAATAT
*
8535783 TAATAATATTTTACTAATTTAATAT
1 TAATAATATTTTAATAATTTAATAT
8535808 TAA
1 TAA
8535811 AGTGATTATC
Statistics
Matches: 38, Mismatches: 9, Indels: 8
0.69 0.16 0.15
Matches are distributed among these distances:
23 14 0.37
24 7 0.18
25 17 0.45
ACGTcount: A:0.43, C:0.04, G:0.01, T:0.51
Consensus pattern (25 bp):
TAATAATATTTTAATAATTTAATAT
Found at i:8540181 original size:16 final size:16
Alignment explanation
Indices: 8540157--8540190 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8540147 GAATGAGAAA
*
8540157 AAAACAAAATTAAAAC
1 AAAACAAAAATAAAAC
*
8540173 AAAATAAAAATAAAAC
1 AAAACAAAAATAAAAC
8540189 AA
1 AA
8540191 TATCCCACTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.79, C:0.09, G:0.00, T:0.12
Consensus pattern (16 bp):
AAAACAAAAATAAAAC
Found at i:8542541 original size:70 final size:70
Alignment explanation
Indices: 8542457--8542602 Score: 292
Period size: 70 Copynumber: 2.1 Consensus size: 70
8542447 ACATTAGATT
8542457 ATTAGGGTGAATATGGAAGGAAATTGAGGAGAAATGAAGTATAAATTAAGTTAAACAAATAAAAG
1 ATTAGGGTGAATATGGAAGGAAATTGAGGAGAAATGAAGTATAAATTAAGTTAAACAAATAAAAG
8542522 AGTTA
66 AGTTA
8542527 ATTAGGGTGAATATGGAAGGAAATTGAGGAGAAATGAAGTATAAATTAAGTTAAACAAATAAAAG
1 ATTAGGGTGAATATGGAAGGAAATTGAGGAGAAATGAAGTATAAATTAAGTTAAACAAATAAAAG
8542592 AGTTA
66 AGTTA
8542597 ATTAGG
1 ATTAGG
8542603 ATTAAATTGG
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 76 1.00
ACGTcount: A:0.49, C:0.01, G:0.25, T:0.25
Consensus pattern (70 bp):
ATTAGGGTGAATATGGAAGGAAATTGAGGAGAAATGAAGTATAAATTAAGTTAAACAAATAAAAG
AGTTA
Found at i:8542632 original size:17 final size:17
Alignment explanation
Indices: 8542596--8542629 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
8542586 TAAAAGAGTT
*
8542596 AATTAGGATTAAATTGG
1 AATTAGGAATAAATTGG
8542613 AATTAGGAAATAAATTG
1 AATTAGG-AATAAATTG
8542630 AATAAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.47, C:0.00, G:0.21, T:0.32
Consensus pattern (17 bp):
AATTAGGAATAAATTGG
Found at i:8542658 original size:12 final size:13
Alignment explanation
Indices: 8542641--8542681 Score: 50
Period size: 12 Copynumber: 3.3 Consensus size: 13
8542631 ATAAAAATTC
*
8542641 AATTAATTAT-TA
1 AATTAATAATGTA
*
8542653 AATTAATGATGT-
1 AATTAATAATGTA
8542665 AATTAATAATGTA
1 AATTAATAATGTA
8542678 AATT
1 AATT
8542682 GTTATTATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
12 20 0.80
13 5 0.20
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (13 bp):
AATTAATAATGTA
Found at i:8543168 original size:27 final size:27
Alignment explanation
Indices: 8543130--8543225 Score: 97
Period size: 27 Copynumber: 3.4 Consensus size: 27
8543120 ATGCCTTATT
8543130 GGTGTGTTTGGGAGGATATGA-TATACC
1 GGTGTGTTTGGGAGGATAT-ATTATACC
* *
8543157 GGTGTGTTTGGGAGGCTATATTATACT
1 GGTGTGTTTGGGAGGATATATTATACC
* *
8543184 GGTGTGTTAT-GGAGGATTTATATTATTTCG
1 GGTGTGTT-TGGGAGGA--TATATTA-TACC
8543214 GGTGTGTTTGGG
1 GGTGTGTTTGGG
8543226 TTGGATATTC
Statistics
Matches: 58, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
26 1 0.02
27 36 0.62
28 1 0.02
29 8 0.14
30 12 0.21
ACGTcount: A:0.18, C:0.05, G:0.36, T:0.41
Consensus pattern (27 bp):
GGTGTGTTTGGGAGGATATATTATACC
Found at i:8544004 original size:45 final size:45
Alignment explanation
Indices: 8543945--8544035 Score: 182
Period size: 45 Copynumber: 2.0 Consensus size: 45
8543935 GTGTTTGTGA
8543945 TGTTTGATGATGAAATATCAAAAATATGTTTTAGATTAACATGTT
1 TGTTTGATGATGAAATATCAAAAATATGTTTTAGATTAACATGTT
8543990 TGTTTGATGATGAAATATCAAAAATATGTTTTAGATTAACATGTT
1 TGTTTGATGATGAAATATCAAAAATATGTTTTAGATTAACATGTT
8544035 T
1 T
8544036 TGTATTGGAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.37, C:0.04, G:0.15, T:0.43
Consensus pattern (45 bp):
TGTTTGATGATGAAATATCAAAAATATGTTTTAGATTAACATGTT
Found at i:8544942 original size:35 final size:35
Alignment explanation
Indices: 8544901--8544997 Score: 99
Period size: 35 Copynumber: 2.7 Consensus size: 35
8544891 CATAGGTAAG
*
8544901 TACATGTAAGCTTATATTGAACTTGT-GTATTCGGT
1 TACATGTAAGCTTATATTGAA-TTGTAGTATTCGAT
* * * * *
8544936 TGCATGTGAGGTTATATTGAATTTTAGTATTTGAT
1 TACATGTAAGCTTATATTGAATTGTAGTATTCGAT
8544971 TACATGTGAA-CTTATATTGAAATTGTA
1 TACATGT-AAGCTTATATTG-AATTGTA
8544998 TACTCGGATA
Statistics
Matches: 49, Mismatches: 10, Indels: 5
0.77 0.16 0.08
Matches are distributed among these distances:
34 3 0.06
35 39 0.80
36 7 0.14
ACGTcount: A:0.29, C:0.07, G:0.20, T:0.44
Consensus pattern (35 bp):
TACATGTAAGCTTATATTGAATTGTAGTATTCGAT
Found at i:8547519 original size:44 final size:44
Alignment explanation
Indices: 8547454--8547541 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
8547444 TGAAGATAAC
8547454 ACACTTATAATAAGGTCATTGGATGAGCACTGATCGATTTGCTT
1 ACACTTATAATAAGGTCATTGGATGAGCACTGATCGATTTGCTT
* *
8547498 ACACTTATAATAAGGTTATTGGATGAGCACTGATTGATTTGCTT
1 ACACTTATAATAAGGTCATTGGATGAGCACTGATCGATTTGCTT
8547542 TCCTAATGGT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (44 bp):
ACACTTATAATAAGGTCATTGGATGAGCACTGATCGATTTGCTT
Found at i:8547838 original size:57 final size:58
Alignment explanation
Indices: 8547759--8547878 Score: 197
Period size: 57 Copynumber: 2.1 Consensus size: 58
8547749 TGAAATGGTG
*
8547759 AAATAGAAAAATAGGAAACATTTGGAAATGATTATAGTTTTCTCCAAAATAAAAATGA
1 AAATGGAAAAATAGGAAACATTTGGAAATGATTATAGTTTTCTCCAAAATAAAAATGA
* * *
8547817 AAATGGAAAAAT-GGAATCATTTGGAAATTATTATAGTTTTCTCCAAAATGAAAATGA
1 AAATGGAAAAATAGGAAACATTTGGAAATGATTATAGTTTTCTCCAAAATAAAAATGA
8547874 AAATG
1 AAATG
8547879 ACTTGAAAAA
Statistics
Matches: 58, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
57 47 0.81
58 11 0.19
ACGTcount: A:0.49, C:0.07, G:0.15, T:0.29
Consensus pattern (58 bp):
AAATGGAAAAATAGGAAACATTTGGAAATGATTATAGTTTTCTCCAAAATAAAAATGA
Found at i:8548932 original size:28 final size:28
Alignment explanation
Indices: 8548892--8548945 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
8548882 AGAAAGAAAG
8548892 TTTAGCTTAATTTATTTAACTGATAAAA
1 TTTAGCTTAATTTATTTAACTGATAAAA
* *
8548920 TTTAGCTTAATTTGTTTAGCTGATAA
1 TTTAGCTTAATTTATTTAACTGATAA
8548946 TTTAAATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.33, C:0.07, G:0.11, T:0.48
Consensus pattern (28 bp):
TTTAGCTTAATTTATTTAACTGATAAAA
Found at i:8550317 original size:17 final size:18
Alignment explanation
Indices: 8550297--8550334 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
8550287 TTTAAAAAAT
*
8550297 AAACTTATGAAAAAT-AA
1 AAACTAATGAAAAATCAA
*
8550314 AAACTAATTAAAAATCAA
1 AAACTAATGAAAAATCAA
8550332 AAA
1 AAA
8550335 TAAAAATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.68, C:0.08, G:0.03, T:0.21
Consensus pattern (18 bp):
AAACTAATGAAAAATCAA
Found at i:8550715 original size:18 final size:18
Alignment explanation
Indices: 8550692--8550733 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
8550682 CAATTATCAG
8550692 TTCAAATAATTTGACCAA
1 TTCAAATAATTTGACCAA
* * *
8550710 TTCAAATAGTTTGATCAG
1 TTCAAATAATTTGACCAA
8550728 TTCAAA
1 TTCAAA
8550734 ACAAATAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.40, C:0.14, G:0.10, T:0.36
Consensus pattern (18 bp):
TTCAAATAATTTGACCAA
Found at i:8551977 original size:16 final size:16
Alignment explanation
Indices: 8551954--8551989 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
8551944 AATAAACAAT
8551954 TAAATAAATT-GGAAA
1 TAAATAAATTGGGAAA
8551969 TAAATTAAATTGGGAAA
1 TAAA-TAAATTGGGAAA
8551986 TAAA
1 TAAA
8551990 CTTGGATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.21
16 6 0.32
17 9 0.47
ACGTcount: A:0.58, C:0.00, G:0.14, T:0.28
Consensus pattern (16 bp):
TAAATAAATTGGGAAA
Found at i:8559926 original size:30 final size:31
Alignment explanation
Indices: 8559892--8559952 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
8559882 TATTTAAAGT
*
8559892 CTTTTTTTAT-TTTTAATTATTAT-TTTTTTA
1 CTTTTTTCATATTTT-ATTATTATGTTTTTTA
*
8559922 CTTTTTTCATATTTTATTTTTATGTTTTTTA
1 CTTTTTTCATATTTTATTATTATGTTTTTTA
8559953 TTTAAAATAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 16 0.59
31 11 0.41
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.75
Consensus pattern (31 bp):
CTTTTTTCATATTTTATTATTATGTTTTTTA
Found at i:8559927 original size:23 final size:22
Alignment explanation
Indices: 8559893--8559942 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 22
8559883 ATTTAAAGTC
8559893 TTTTTTTATTTTT-A-ATTATTA
1 TTTTTTTATTTTTCATATT-TTA
8559914 TTTTTTTACTTTTTTCATATTTTA
1 TTTTTTTA--TTTTTCATATTTTA
8559938 TTTTT
1 TTTTT
8559943 ATGTTTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
21 8 0.32
23 5 0.20
24 9 0.36
25 3 0.12
ACGTcount: A:0.18, C:0.04, G:0.00, T:0.78
Consensus pattern (22 bp):
TTTTTTTATTTTTCATATTTTA
Found at i:8559934 original size:22 final size:20
Alignment explanation
Indices: 8559893--8559949 Score: 53
Period size: 21 Copynumber: 2.6 Consensus size: 20
8559883 ATTTAAAGTC
8559893 TTTTTTTATTTTTAATTATT
1 TTTTTTTATTTTTAATTATT
*
8559913 ATTTTTTTACTTTTTTCA-TATT
1 -TTTTTTTA--TTTTTAATTATT
8559935 TTATTTTTATGTTTT
1 TT-TTTTTAT-TTTT
8559950 TTATTTAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
20 1 0.03
21 14 0.45
22 10 0.32
23 6 0.19
ACGTcount: A:0.18, C:0.04, G:0.02, T:0.77
Consensus pattern (20 bp):
TTTTTTTATTTTTAATTATT
Found at i:8560156 original size:21 final size:20
Alignment explanation
Indices: 8560132--8560185 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 20
8560122 AAAAAATACA
8560132 AAAATTTAATGTATCAAAATT
1 AAAATTTAATGTAT-AAAATT
** *
8560153 AAAATTTAAAATATAAATTT
1 AAAATTTAATGTATAAAATT
8560173 AAAATTTATATGT
1 AAAATTTA-ATGT
8560186 GTACAAAGAT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 13 0.48
21 14 0.52
ACGTcount: A:0.54, C:0.02, G:0.04, T:0.41
Consensus pattern (20 bp):
AAAATTTAATGTATAAAATT
Found at i:8560775 original size:24 final size:23
Alignment explanation
Indices: 8560747--8560803 Score: 60
Period size: 24 Copynumber: 2.4 Consensus size: 23
8560737 TTATTTTTAA
* *
8560747 AAATATTTAAAATATTATATTTTT
1 AAATATTTAAAATA-TACATATTT
* *
8560771 CAATATTATTAAATATACATATTT
1 AAATATT-TAAAATATACATATTT
8560795 AAATATTTA
1 AAATATTTA
8560804 TATATATTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
23 1 0.04
24 19 0.73
25 6 0.23
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (23 bp):
AAATATTTAAAATATACATATTT
Found at i:8560808 original size:16 final size:17
Alignment explanation
Indices: 8560789--8560888 Score: 64
Period size: 18 Copynumber: 5.6 Consensus size: 17
8560779 TTAAATATAC
8560789 ATATTTAAA-TATTTATAT
1 ATATTTAAATTA-TT-TAT
8560807 ATATTTAAATTTATTTAT
1 ATATTTAAA-TTATTTAT
* *
8560825 ATA-ATAAATTATTAAT
1 ATATTTAAATTATTTAT
*
8560841 ATA-ATAAATATAATTTATT
1 ATATTTAAAT-T-ATTTA-T
*
8560860 ATTTTAATAAATTATTTA-
1 ATATT--TAAATTATTTAT
8560878 ATATTTAAATT
1 ATATTTAAATT
8560889 TTATTTTAAT
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
16 22 0.32
17 5 0.07
18 23 0.34
19 5 0.07
20 7 0.10
21 1 0.01
22 5 0.07
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (17 bp):
ATATTTAAATTATTTAT
Found at i:8560810 original size:18 final size:19
Alignment explanation
Indices: 8560784--8560843 Score: 65
Period size: 18 Copynumber: 3.3 Consensus size: 19
8560774 TATTATTAAA
*
8560784 TATACATATTTAAA-TATT
1 TATATATATTTAAATTATT
8560802 TATATATATTTAAATTTATT
1 TATATATATTTAAA-TTATT
8560822 TATATA-A--TAAATTATT
1 TATATATATTTAAATTATT
*
8560838 AATATA
1 TATATA
8560844 ATAAATATAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
16 10 0.26
17 4 0.11
18 13 0.34
19 1 0.03
20 10 0.26
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TATATATATTTAAATTATT
Found at i:8560843 original size:34 final size:34
Alignment explanation
Indices: 8560805--8560903 Score: 87
Period size: 38 Copynumber: 2.8 Consensus size: 34
8560795 AAATATTTAT
8560805 ATATATTTAAATTTATTTATATAATAAATTATTA
1 ATATATTTAAATTTATTTATATAATAAATTATTA
* * *
8560839 ATATAATAAATATAATTTA-TTATTTTAATAAATTATTT
1 ATAT-AT--TTA-AATTTATTTA-TATAATAAATTATTA
8560877 A-ATATTTAAATTTTATTT-TAATAATAA
1 ATATATTTAAA-TTTATTTAT-ATAATAA
8560904 TTTTTTTAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 16
0.71 0.07 0.22
Matches are distributed among these distances:
33 3 0.06
34 16 0.31
35 4 0.08
36 2 0.04
37 7 0.13
38 20 0.38
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (34 bp):
ATATATTTAAATTTATTTATATAATAAATTATTA
Found at i:8560858 original size:22 final size:22
Alignment explanation
Indices: 8560828--8560871 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
8560818 TATTTATATA
8560828 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
8560850 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
8560872 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:8560894 original size:18 final size:18
Alignment explanation
Indices: 8560789--8560899 Score: 54
Period size: 16 Copynumber: 6.2 Consensus size: 18
8560779 TTAAATATAC
*
8560789 ATATTTAAATATTTATAT-
1 ATATTTAAAT-TTTATTTA
8560807 ATATTTAAA-TTTATTT-
1 ATATTTAAATTTTATTTA
*
8560823 ATATAATAAA--TTA-TTA
1 ATAT-TTAAATTTTATTTA
* * *
8560839 ATATAATAAATATAATTTA
1 ATAT-TTAAATTTTATTTA
* **
8560858 TTATTTTAATAAATTATTTA
1 ATA-TTTAA-ATTTTATTTA
8560878 ATATTTAAATTTTATTTTA
1 ATATTTAAATTTTA-TTTA
8560897 ATA
1 ATA
8560900 ATAATTTTTT
Statistics
Matches: 75, Mismatches: 10, Indels: 15
0.75 0.10 0.15
Matches are distributed among these distances:
15 2 0.03
16 23 0.31
17 4 0.05
18 15 0.20
19 20 0.27
20 11 0.15
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
ATATTTAAATTTTATTTA
Found at i:8560912 original size:15 final size:15
Alignment explanation
Indices: 8560892--8560922 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8560882 TTAAATTTTA
*
8560892 TTTTAATAATAATTT
1 TTTTAAAAATAATTT
8560907 TTTTAAAAATAATTT
1 TTTTAAAAATAATTT
8560922 T
1 T
8560923 AAATAATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
TTTTAAAAATAATTT
Found at i:8565696 original size:18 final size:18
Alignment explanation
Indices: 8565655--8565698 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
8565645 ATCGATTCTT
*
8565655 AGTTCAAATAGTTTGACT
1 AGTTCAAATAGTTTGACC
*
8565673 AATTCAAATAGTTTGACC
1 AGTTCAAATAGTTTGACC
8565691 AGTTCAAA
1 AGTTCAAA
8565699 ACAATTAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (18 bp):
AGTTCAAATAGTTTGACC
Found at i:8569049 original size:14 final size:15
Alignment explanation
Indices: 8569025--8569054 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
8569015 ATAAAAAATT
8569025 TATATTAATTTTTAA
1 TATATTAATTTTTAA
8569040 TATA-TAATTTTTAA
1 TATATTAATTTTTAA
8569054 T
1 T
8569055 GAAAATTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
TATATTAATTTTTAA
Found at i:8571350 original size:129 final size:124
Alignment explanation
Indices: 8571198--8571533 Score: 363
Period size: 127 Copynumber: 2.6 Consensus size: 124
8571188 TTTGAAGGTC
* *
8571198 TGAGAAATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCGTTC-AGCTAAAATACGGAATATCCT
1 TGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTCGA-CTAAAATACGGAATATCCT
* * * * * ***
8571262 TTGAAAATTTCGTCCCCG-TTT-TTAAAAAGAATTAAAATGAGGCAATATTTCGTATTTGGGGAG
65 TTG-AAATTTCATCCACGCTTTCTT----A-AACTAAAACGAGGCAATATTTCATATTT-AAAAG
8571325 TT
123 TT
* * *
8571327 TGAGAGATCATGCCCAATCGTGCTGGGTTTCGTTTTTTCATTCGACTAAAATATGGAATATCCTT
1 TGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTCGACTAAAATACGGAATATCC--
* *
8571392 TTTTGAAATTTCATCTACGCTTTCTTAAACTAAAACGAGGCAATATTTCATGTTTAAAAGTT
64 -TTTGAAATTTCATCCACGCTTTCTTAAACTAAAACGAGGCAATATTTCATATTTAAAAGTT
* * * *
8571454 TGGGAGATCGTGCCCAATCGTGATGGGTTTTGATTTTTCATTCGACTAAGATACGGAATATCCTT
1 TGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTCGACTAAAATACGGAATATCCTT
*
8571519 TCGACATTTCATCCA
66 T-GAAATTTCATCCA
8571534 TATTTCGTAT
Statistics
Matches: 176, Mismatches: 24, Indels: 18
0.81 0.11 0.08
Matches are distributed among these distances:
124 3 0.02
125 11 0.06
127 60 0.34
128 24 0.14
129 57 0.32
130 1 0.01
131 11 0.06
132 7 0.04
133 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (124 bp):
TGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTCGACTAAAATACGGAATATCCTT
TGAAATTTCATCCACGCTTTCTTAAACTAAAACGAGGCAATATTTCATATTTAAAAGTT
Found at i:8574882 original size:20 final size:20
Alignment explanation
Indices: 8574857--8574901 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
8574847 ATCAGAATCG
*
8574857 ACATCTCTTTCATCTTGCA-T
1 ACATCTCATTCAT-TTGCATT
8574877 ACATCTCATTCATTTGCATT
1 ACATCTCATTCATTTGCATT
8574897 ACATC
1 ACATC
8574902 ACATCATGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.24, C:0.29, G:0.04, T:0.42
Consensus pattern (20 bp):
ACATCTCATTCATTTGCATT
Found at i:8574913 original size:19 final size:19
Alignment explanation
Indices: 8574872--8574913 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
8574862 TCTTTCATCT
* *
8574872 TGCATACATCTCATTCATT
1 TGCATACATCACATTCATG
8574891 TGCATTACATCACA-TCATG
1 TGCA-TACATCACATTCATG
8574910 TGCA
1 TGCA
8574914 CTAAACTTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.29, C:0.26, G:0.10, T:0.36
Consensus pattern (19 bp):
TGCATACATCACATTCATG
Found at i:8581756 original size:45 final size:44
Alignment explanation
Indices: 8581696--8581782 Score: 122
Period size: 45 Copynumber: 2.0 Consensus size: 44
8581686 TACTTCACCT
* *
8581696 AAAAAAGGAAAGGCCAATGCGAAAACTCGA-AAAGGGCGCTTTAA
1 AAAAAAGGAAAGGCCAAGGCGAAAAC-CCACAAAGGGCGCTTTAA
*
8581740 AAAAAATGGAGAGGCCAAGGCGAAAACCCACAAAGGGCGCTTT
1 AAAAAA-GGAAAGGCCAAGGCGAAAACCCACAAAGGGCGCTTT
8581783 GAGTTGAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
44 8 0.21
45 30 0.79
ACGTcount: A:0.45, C:0.18, G:0.26, T:0.10
Consensus pattern (44 bp):
AAAAAAGGAAAGGCCAAGGCGAAAACCCACAAAGGGCGCTTTAA
Found at i:8582904 original size:132 final size:132
Alignment explanation
Indices: 8582678--8582970 Score: 478
Period size: 132 Copynumber: 2.2 Consensus size: 132
8582668 AAATGGCGAG
* *
8582678 TCTTATCTCCATGTATCGGCTGTGGAGCAGATTTTAGCCATCGACCTTATCTTTCTGAGGTAACA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCATCGACCTTATCTCTCTGAGGTAACA
* *
8582743 AGAGAGCAGGTTAAAGATATGAGCCTTAACCCCCTAAGCAGTAAGGTAACATGCTAAAAATTACA
66 AGAGAGCAGATTAAAGATACGAGCCTTAACCCCCTAAGCAGTAAGGTAACATGCTAAAAATTACA
*
8582808 GA
131 AA
*
8582810 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCATCGACCTTATCTCTCTGAGGTAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCATCGACCTTATCTCTCTGAGGTAACA
* * * * *
8582875 AGAGAGCAGATTGAAGATACGAGCCTTAACCTCTTAAGCAGTAGGGTAACATGCTACAAATTACA
66 AGAGAGCAGATTAAAGATACGAGCCTTAACCCCCTAAGCAGTAAGGTAACATGCTAAAAATTACA
8582940 AA
131 AA
*
8582942 TCTTATCTCCATGTATCGGCTATAGAGCA
1 TCTTATCTCCATGTATCGGCTATGGAGCA
8582971 TATCGAAAAT
Statistics
Matches: 149, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 149 1.00
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (132 bp):
TCTTATCTCCATGTATCGGCTATGGAGCAGATTTTAGCCATCGACCTTATCTCTCTGAGGTAACA
AGAGAGCAGATTAAAGATACGAGCCTTAACCCCCTAAGCAGTAAGGTAACATGCTAAAAATTACA
AA
Done.