Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 31 of 295
Found at i:8583006 original size:177 final size:177
Alignment explanation
Indices: 8582823--8583147 Score: 544
Period size: 177 Copynumber: 1.8 Consensus size: 177
8582813 TATCTCCATG
8582823 TATCGGCTATGGAGCAGATTTTAGCCATCGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGATTG
1 TATCGGCTATGGAGCAGATTTTAGCCATCGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGATTG
* * *
8582888 AAGATACGAGCCTT-AACCTCTTAAGCAGTAGGGTAACATGCTACAAATTACAAATCTTATCTCC
66 AAGATACGAGCCTTGAACCCCCTAAGCAGTA-GGTAACAGGCTACAAATTACAAATCTTATCTCC
*
8582952 ATGTATCGGCTATAGAGCATATCGAAAATGGCAAGTCTTATATCTATA
130 ATGCATCGGCTATAGAGCATATCGAAAATGGCAAGTCTTATATCTATA
* *
8583000 TATCGGCTATGGAGCAGATTTTAGCCTTCGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTG
1 TATCGGCTATGGAGCAGATTTTAGCCATCGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGATTG
* * *
8583065 AAGATACGAGCCTTGACCCCCCTAAGCAGTAGGTAACAGGCTGCAAATTACAGATCTTATCTCCA
66 AAGATACGAGCCTTGAACCCCCTAAGCAGTAGGTAACAGGCTACAAATTACAAATCTTATCTCCA
*
8583130 TGCATCGGCTATGGAGCA
131 TGCATCGGCTATAGAGCA
8583148 GATTTTAGCC
Statistics
Matches: 137, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
177 124 0.91
178 13 0.09
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (177 bp):
TATCGGCTATGGAGCAGATTTTAGCCATCGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGATTG
AAGATACGAGCCTTGAACCCCCTAAGCAGTAGGTAACAGGCTACAAATTACAAATCTTATCTCCA
TGCATCGGCTATAGAGCATATCGAAAATGGCAAGTCTTATATCTATA
Found at i:8583144 original size:309 final size:307
Alignment explanation
Indices: 8582566--8583421 Score: 1259
Period size: 309 Copynumber: 2.8 Consensus size: 307
8582556 TAAACAGTAG
* * * *
8582566 GAGAACAGATCGAAGGTAGCGAGCCTTAACCCCCTAAGCAGTAGGGTAACAGGCTACAAATTA-A
1 GAGAGCAGATTGAAGATA-CGAGCCTTAA-CCCTTAAGCAGTAGGGTAACAGGCTACAAATTACA
* * * *
8582630 AGCTTTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAGTCTTATCTCCATGTATC
64 A-ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAGTCTTATCTCTATATATC
* * * *
8582695 GGCTGTGGAGCAGATTTTAGCCATCGACCTTATCTTTCTGAGGTAACAAGAGAGCAGGTTAAAGA
128 GGCTATGGAGCAGATTTTAGCCATCGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA
* * *
8582760 TATGAGCCTTAACCCCCTAAGCAGTAAGGTAACATGCTAAAAATTACAGATCTTATCTCCATGTA
193 TATGAGCCTTAACCCCCTAAGCAGT-AGGTAACAGGCTGAAAATTACAGATCTTATCTCCATGCA
*
8582825 TCGGCTATGGAGCAGATTTTAGCCATCGACCTTATCTCTCTGAGGTAGCAA
257 TCGGCTATGGAGCAGATTTTAGCCATCGACCTTATCTCTCTAAGGTAGCAA
*
8582876 GAGAGCAGATTGAAGATACGAGCCTTAACCTCTTAAGCAGTAGGGTAACATGCTACAAATTACAA
1 GAGAGCAGATTGAAGATACGAGCCTTAACC-CTTAAGCAGTAGGGTAACAGGCTACAAATTACAA
* * * *
8582941 ATCTTATCTCCATGTATCGGCTATAGAGCATATCGAAAATGGCAAGTCTTATATCTATATATCGG
65 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAGTCTTATCTCTATATATCGG
*
8583006 CTATGGAGCAGATTTTAGCCTTCGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATA
130 CTATGGAGCAGATTTTAGCCATCGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATA
* * *
8583071 CGAGCCTTGACCCCCCTAAGCAGTAGGTAACAGGCTGCAAATTACAGATCTTATCTCCATGCATC
195 TGAGCCTT-AACCCCCTAAGCAGTAGGTAACAGGCTGAAAATTACAGATCTTATCTCCATGCATC
8583136 GGCTATGGAGCAGATTTTAGCCATCGACCTTATCTCTCTAAGGTAGCAA
259 GGCTATGGAGCAGATTTTAGCCATCGACCTTATCTCTCTAAGGTAGCAA
* * *
8583185 GAGAGCAGATTGAAGATACGAGCCTTAACCCTCTAAGTAGTAGGGTAACAGGCTGCAAATTACAG
1 GAGAGCAGATTGAAGATACGAGCCTTAACCCT-TAAGCAGTAGGGTAACAGGCTACAAATTACAA
* * *
8583250 ATCTTATCTCCATGTATCAGCTACGGAGCAGATCGAAAATGGTGAGTCTTATCTCTATGA-ATCG
65 ATCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAGTCTTATCTCTAT-ATATCG
* * * * * * *
8583314 ACTATAGAGTAGA-TTTAGTCACCGACCTTATGTCTCTGAGGTAGCAAGAGAGCAGTTTGAAGAT
129 GCTATGGAGCAGATTTTAGCCATCGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGAT
*
8583378 ATGAGCCTTAACCCCCTAAGCAGTAGAGTGACAGGCTGAAAATT
194 ATGAGCCTTAACCCCCTAAGCAGTAG-GTAACAGGCTGAAAATT
8583422 GCAAATTTTA
Statistics
Matches: 492, Mismatches: 48, Indels: 14
0.89 0.09 0.03
Matches are distributed among these distances:
307 16 0.03
308 73 0.15
309 371 0.75
310 32 0.07
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (307 bp):
GAGAGCAGATTGAAGATACGAGCCTTAACCCTTAAGCAGTAGGGTAACAGGCTACAAATTACAAA
TCTTATCTCCATGTATCGGCTATGGAGCAGATCGAAAATGGCGAGTCTTATCTCTATATATCGGC
TATGGAGCAGATTTTAGCCATCGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATAT
GAGCCTTAACCCCCTAAGCAGTAGGTAACAGGCTGAAAATTACAGATCTTATCTCCATGCATCGG
CTATGGAGCAGATTTTAGCCATCGACCTTATCTCTCTAAGGTAGCAA
Found at i:8583232 original size:132 final size:132
Alignment explanation
Indices: 8583001--8583282 Score: 467
Period size: 132 Copynumber: 2.1 Consensus size: 132
8582991 ATATCTATAT
* * *
8583001 ATCGGCTATGGAGCAGATTTTAGCCTTCGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGA
1 ATCGGCTATGGAGCAGATTTTAGCCATCGACCTTATCTCTCTAAGGTAGCAAGAGAGCAGATTGA
*
8583066 AGATACGAGCCTTGACCCCCCTAAGCAGTAGGTAACAGGCTGCAAATTACAGATCTTATCTCCAT
66 AGATACGAGCCTTGAACCCCCTAAGCAGTAGGTAACAGGCTGCAAATTACAGATCTTATCTCCAT
8583131 GC
131 GC
8583133 ATCGGCTATGGAGCAGATTTTAGCCATCGACCTTATCTCTCTAAGGTAGCAAGAGAGCAGATTGA
1 ATCGGCTATGGAGCAGATTTTAGCCATCGACCTTATCTCTCTAAGGTAGCAAGAGAGCAGATTGA
* *
8583198 AGATACGAGCCTT-AACCCTCTAAGTAGTAGGGTAACAGGCTGCAAATTACAGATCTTATCTCCA
66 AGATACGAGCCTTGAACCCCCTAAGCAGTA-GGTAACAGGCTGCAAATTACAGATCTTATCTCCA
*
8583262 TGT
130 TGC
* *
8583265 ATCAGCTACGGAGCAGAT
1 ATCGGCTATGGAGCAGAT
8583283 CGAAAATGGT
Statistics
Matches: 140, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
131 13 0.09
132 127 0.91
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (132 bp):
ATCGGCTATGGAGCAGATTTTAGCCATCGACCTTATCTCTCTAAGGTAGCAAGAGAGCAGATTGA
AGATACGAGCCTTGAACCCCCTAAGCAGTAGGTAACAGGCTGCAAATTACAGATCTTATCTCCAT
GC
Found at i:8586028 original size:127 final size:124
Alignment explanation
Indices: 8585715--8586151 Score: 430
Period size: 125 Copynumber: 3.4 Consensus size: 124
8585705 CTTAATGAAT
* * * * *
8585715 TATTTCGTGTTT-GAAGGTCTGAGAAATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCGTTCAG
1 TATTTCGTATTTAGAA-GTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTCAA
* * * * *
8585779 CTAAAATACAGAATATCCTTTGGAAATTTCGTCCATGTTTTTAAAAAAAAATTAAAATGAAGCAA
65 CTAAAATACGGAATATCCTTTCGAAATTTCATCCATGTTTTT-----TAAATTAAAATGAGGCAA
* * * * * *
8585844 TATTTCATATTTGGGGAGTTTGAGAGATCATGCCCAATCGTGTTGGGTTTC-ATTTTTTCATTTA
1 TATTTCGTATTT-AGAAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGA-TTTTTCATTCA
* * * *
8585908 ACTAAAATATGGAATATCCTTTTTTGAAATTTCATCCACGCTTTTTTAAACTAAAATGAGGCAA
64 ACTAAAATACGGAATATCC--TTTCGAAATTTCATCCATG-TTTTTTAAATTAAAATGAGGCAA
** * *
8585972 TATTTCGCGTTTAGAAGTTTGGGAGATCGTGCCCAATCGTGCAT-GGTTTCGATTTTTCATTCGA
1 TATTTCGTATTTAGAAGTTTGAGAGATCGTGCCCAATCGTGC-TGGGTTTCGATTTTTCATTCAA
* * * *
8586036 CTAAGATACGAAATACCCTTTCGACATTTCATCCATGTTTTATTAAATTAAAATGAGGCAA
65 CTAAAATACGGAATATCCTTTCGAAATTTCATCCATGTTTT-TTAAATTAAAATGAGGCAA
* * * * * *
8586097 TATTTCGTATTTAGAAATTCGATAAATTGTGCCCAATCGTGCTGGGTTGCGATTT
1 TATTTCGTATTTAGAAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTT
8586152 ACCGCTTGGT
Statistics
Matches: 253, Mismatches: 45, Indels: 24
0.79 0.14 0.07
Matches are distributed among these distances:
124 5 0.02
125 78 0.31
127 55 0.22
128 26 0.10
129 11 0.04
130 55 0.22
131 2 0.01
132 16 0.06
133 5 0.02
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (124 bp):
TATTTCGTATTTAGAAGTTTGAGAGATCGTGCCCAATCGTGCTGGGTTTCGATTTTTCATTCAAC
TAAAATACGGAATATCCTTTCGAAATTTCATCCATGTTTTTTAAATTAAAATGAGGCAA
Found at i:8586190 original size:125 final size:125
Alignment explanation
Indices: 8585920--8586191 Score: 282
Period size: 125 Copynumber: 2.2 Consensus size: 125
8585910 TAAAATATGG
*
8585920 AATATCCTTTTTTGAAATTTCATCCACGCTTTTTTAAACTAAAATGAGGCAATATTTCGCGTTTA
1 AATATCC--TTTTGAAATTTCATCCACGCTTTTTTAAACTAAAATGAGGCAATATTTCGCATTTA
* * * * * ** *
8585985 GAAGTTTGGGAGATCGTGCCCAATCGTGCATGGTTTCGATTTTTCATTCGACTAAGATACGA
64 GAAATTCGAGAAATCGTGCCCAATCGTGCATGGTTGCGATTTACCATTCGACTAAGATACCA
* * * * * *
8586047 AATACCCTTTCGACATTTCATCCATG-TTTTATTAAATTAAAATGAGGCAATATTTCGTATTTAG
1 AATATCCTTTTGAAATTTCATCCACGCTTTT-TTAAACTAAAATGAGGCAATATTTCGCATTTAG
* * * * *
8586111 AAATTCGATAAATTGTGCCCAATCGTGC-TGGGTTGCGATTTACCGCTTGGTC-AA-ATAACCA
65 AAATTCGAGAAATCGTGCCCAATCGTGCAT-GGTTGCGATTTACC-ATTCGACTAAGAT-ACCA
8586172 AATATCCTTTTGAAATTTCA
1 AATATCCTTTTGAAATTTCA
8586192 AATGCATGAG
Statistics
Matches: 118, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
124 7 0.06
125 101 0.86
126 4 0.03
127 6 0.05
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (125 bp):
AATATCCTTTTGAAATTTCATCCACGCTTTTTTAAACTAAAATGAGGCAATATTTCGCATTTAGA
AATTCGAGAAATCGTGCCCAATCGTGCATGGTTGCGATTTACCATTCGACTAAGATACCA
Found at i:8596905 original size:15 final size:15
Alignment explanation
Indices: 8596885--8596915 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
8596875 TAAAGAGCCG
8596885 TCACTGGATAGTTTA
1 TCACTGGATAGTTTA
8596900 TCACTGGATAGTTTA
1 TCACTGGATAGTTTA
8596915 T
1 T
8596916 GTCATGACCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (15 bp):
TCACTGGATAGTTTA
Found at i:8599877 original size:29 final size:24
Alignment explanation
Indices: 8599833--8599889 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 24
8599823 GAAATATACG
8599833 ATATATAATATTGAAGGTAAATACATA
1 ATATATAATATTGAA-GT-AAT-CATA
8599860 ATATATACATATTAGAAGTAATCATA
1 ATATATA-ATATT-GAAGTAATCATA
8599886 ATAT
1 ATAT
8599890 TAGAAACAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
26 8 0.29
27 10 0.36
28 7 0.25
29 3 0.11
ACGTcount: A:0.51, C:0.05, G:0.09, T:0.35
Consensus pattern (24 bp):
ATATATAATATTGAAGTAATCATA
Found at i:8600101 original size:24 final size:26
Alignment explanation
Indices: 8600054--8600102 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 26
8600044 ATATTAAAAG
*
8600054 ATATATATATATAAAATGTATACATA
1 ATATATATATATAAAATATATACATA
*
8600080 ATATA-ATAT-TAAAATATTTACAT
1 ATATATATATATAAAATATATACAT
8600103 GGTATATACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 12 0.57
25 4 0.19
26 5 0.24
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.41
Consensus pattern (26 bp):
ATATATATATATAAAATATATACATA
Found at i:8600703 original size:39 final size:38
Alignment explanation
Indices: 8600611--8600759 Score: 185
Period size: 39 Copynumber: 3.9 Consensus size: 38
8600601 ATTCCACTCC
* * * *
8600611 CCCCATGCTACTTTGTTTTATTATTAATCAAAAAC-ACT
1 CCCCATACTATTTTGTTTTATTATTAAT-TAAAACTATT
* *
8600649 -CCCATGCTATTTTGTTTTATTGTTAATTAAAACTATTT
1 CCCCATACTATTTTGTTTTATTATTAATTAAAACTA-TT
*
8600687 CCCCATACTATTTTGTTTTATTGTTAATTAAAACTACTT
1 CCCCATACTATTTTGTTTTATTATTAATTAAAACTA-TT
*
8600726 CCTCATACTATTTTGTTTTATTATTAATTAAAAC
1 CCCCATACTATTTTGTTTTATTATTAATTAAAAC
8600760 CATACTTTAT
Statistics
Matches: 100, Mismatches: 8, Indels: 5
0.88 0.07 0.04
Matches are distributed among these distances:
36 5 0.05
37 26 0.26
38 1 0.01
39 68 0.68
ACGTcount: A:0.30, C:0.17, G:0.05, T:0.48
Consensus pattern (38 bp):
CCCCATACTATTTTGTTTTATTATTAATTAAAACTATT
Found at i:8600708 original size:76 final size:78
Alignment explanation
Indices: 8600611--8600759 Score: 214
Period size: 78 Copynumber: 1.9 Consensus size: 78
8600601 ATTCCACTCC
* * *
8600611 CCCCATGCTACTTTGTTTTATTATTAATCAAAAAC-AC-TCC-CATGCTATTTTGTTTTATTGTT
1 CCCCATACTACTTTGTTTTATTATTAAT-AAAAACTACTTCCTCATACTATTTTGTTTTATTATT
8600673 AATTAAAACTATTT
65 AATTAAAACTATTT
* * *
8600687 CCCCATACTATTTTGTTTTATTGTTAATTAAAACTACTTCCTCATACTATTTTGTTTTATTATTA
1 CCCCATACTACTTTGTTTTATTATTAATAAAAACTACTTCCTCATACTATTTTGTTTTATTATTA
8600752 ATTAAAAC
66 ATTAAAAC
8600760 CATACTTTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
75 5 0.08
76 27 0.42
77 3 0.05
78 29 0.45
ACGTcount: A:0.30, C:0.17, G:0.05, T:0.48
Consensus pattern (78 bp):
CCCCATACTACTTTGTTTTATTATTAATAAAAACTACTTCCTCATACTATTTTGTTTTATTATTA
ATTAAAACTATTT
Found at i:8600797 original size:21 final size:22
Alignment explanation
Indices: 8600771--8600834 Score: 85
Period size: 22 Copynumber: 3.0 Consensus size: 22
8600761 ATACTTTATT
8600771 TTTTTTTATCAT-AAAAAAACC
1 TTTTTTTATCATAAAAAAAACC
*
8600792 TTTTTTTATCATAAAAAAAATC
1 TTTTTTTATCATAAAAAAAACC
* * *
8600814 TTTTTTTTTTAAAAAAAAAAC
1 TTTTTTTATCATAAAAAAAAC
8600835 AACAAAAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
21 12 0.32
22 25 0.68
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (22 bp):
TTTTTTTATCATAAAAAAAACC
Found at i:8602066 original size:45 final size:45
Alignment explanation
Indices: 8602002--8602087 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 45
8601992 CGATATCTGC
* * *
8602002 TATCTTTGATCTGCCCCCCGTCTACTACAAAGACGCTAAATCTAT
1 TATCTTCGATCTGCCCCCCGTCTAATACAAAGACGCCAAATCTAT
* *
8602047 TATCTTCGATCTGCTCCCCGTCTAATACAGAGACGCCAAAT
1 TATCTTCGATCTGCCCCCCGTCTAATACAAAGACGCCAAAT
8602088 TTGATTCTTC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.27, C:0.31, G:0.13, T:0.29
Consensus pattern (45 bp):
TATCTTCGATCTGCCCCCCGTCTAATACAAAGACGCCAAATCTAT
Found at i:8602581 original size:210 final size:210
Alignment explanation
Indices: 8602181--8603152 Score: 1207
Period size: 210 Copynumber: 4.7 Consensus size: 210
8602171 AAATCTGCTT
* * * * * *
8602181 CTTCGATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTGA-CGTAAGCA
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGC-TTCATCGTAAACA
* * * ** * **
8602245 CGTGAAAGCCAAATCAACTATGA--TTCGATTTGCTTCTTGTAAGCATA-AG-GATGCCAA-A-C
65 CGTGAAAGCCAAATCAGCTAT-ATCTTCGATTTGCTCCCTG-CCGAATACAGAGA-GATAAGATC
* **
8602304 ---CATCTTGGATCCGCTTCAGCATAAACAT-TCGAAGGCGAGATCTGCTATGTGTCTG-CTCTC
127 TGTCATCTTGGATCTGCTTCAGCATAAACATCT-GAAGGTAAGATCTGCTATGTGTCTGCCT-TC
*
8602364 TATCAAAGT-GAAGATGCCAAA
190 CATCAAAGTGGAA-ATGCCAAA
* * *
8602385 CTTTGATTCGTTCTCTGACAATACAGAGACGACACATCATCTTAGATTTGCTTCATCGAAAACAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* *
8602450 GTGAAAGCCAAATCAGCTATATCTTCGATCTGTTCCCTGCCGAATACAGAGAGATAAGATCTGTC
66 GTGAAAGCCAAATCAGCTATATCTTCGATTTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTC
*
8602515 ATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCAA
131 ATCTTGGATCTGCTTCAGCATAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCAA
*
8602580 AGTGGAAATGCCAGA
196 AGTGGAAATGCCAAA
*
8602595 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* *
8602660 GTAAAAGCCAAATCAGCTATATCTTCGATTTGCTCCTTGCCGAATACAGAGAGATAAGATCTGTC
66 GTGAAAGCCAAATCAGCTATATCTTCGATTTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTC
* * *
8602725 ATCTTGGATCTGCTTCAGCGTAAACATCTGAAAGTAAGATCTGCTATGTGTCTGCCTTCTATCAA
131 ATCTTGGATCTGCTTCAGCATAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCAA
*
8602790 AGTGGAAATGCCAGA
196 AGTGGAAATGCCAAA
* * * *
8602805 CTTCGATTTGTTCTCTGACAATACAGAGACGAAAAATCATCTTAGATTTGCTTTAACGTAAACAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * * ** *
8602870 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTG-TAAACACA-AG-GATGCCAA-A-C-
66 GTGAAAGCCAAATCAGCTATATCTTCGATTTGCTCCCTGCCGAATACAGAGAGAT---AAGATCT
* ** * *
8602929 --CATCTTGTATCCACTTCAGCATAAACATCTGAAGGTCAGATCTGCTATGTGTCTGTTCTT-CA
128 GTCATCTTGGATCTGCTTCAGCATAAACATCTGAAGGTAAGATCTGCTATGTGTCTG-CCTTCCA
8602991 TCAAAGT-GAAGATGCCAAA
192 TCAAAGTGGAA-ATGCCAAA
*
8603010 CTTCGATTCGTTCTCTGACATTACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* * *
8603075 GTGAAAGCCAAATCAACTATATCTTCGATATGCTCCCCGCCGAATACAGAGAGATAAGATCTGTC
66 GTGAAAGCCAAATCAGCTATATCTTCGATTTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTC
*
8603140 ATCTTAGATCTGC
131 ATCTTGGATCTGC
8603153 CTCGATGAAG
Statistics
Matches: 671, Mismatches: 71, Indels: 46
0.85 0.09 0.06
Matches are distributed among these distances:
203 4 0.01
204 78 0.12
205 176 0.26
206 12 0.02
207 7 0.01
208 6 0.01
209 6 0.01
210 376 0.56
211 6 0.01
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.29
Consensus pattern (210 bp):
CTTCGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
GTGAAAGCCAAATCAGCTATATCTTCGATTTGCTCCCTGCCGAATACAGAGAGATAAGATCTGTC
ATCTTGGATCTGCTTCAGCATAAACATCTGAAGGTAAGATCTGCTATGTGTCTGCCTTCCATCAA
AGTGGAAATGCCAAA
Found at i:8603074 original size:415 final size:418
Alignment explanation
Indices: 8602181--8603152 Score: 1266
Period size: 415 Copynumber: 2.3 Consensus size: 418
8602171 AAATCTGCTT
* * * * *
8602181 CTTCGATTTGTTCCCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTTGA-CGTAAGCA
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGC-TTCATCGTAAACA
* ** * **
8602245 CGTGAAAGCCAAATCAACTATGA--TTCGATTTGCTTCTTGTAAGCATA-AG-GATGCCAA-A-C
65 CGTGAAAGCCAAATCAACTAT-ATCTTCGATTTGCTCCTTG-CCGAATACAGAGA-GATAAGATC
* * *
8602304 ---CATCTTGGATCCGCTTCAGCATAAACATTCGAAGGCGAGATCTGCTATGTGTCTGCTCTCTA
127 TGTCATCTTGGATCTGCTTCAGCATAAACATTCGAAAGCAAGATCTGCTATGTGTCTGCTCTCTA
* * *
8602366 TCAAAGTGAAGATGCCAAACTTTGATTCGTTCTCTGACAATACAGAGACGACACATCATCTTAGA
192 TCAAAGTGAAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGAAAAATCATCTTAGA
* * *
8602431 TTTGCTTCATCGAAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGTTCCCTGCCGAATA
257 TTTGCTTCAACGAAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGTTCCCTGCCAAACA
** *
8602496 CAGAGAGATAAGATCTGTCATCTTGGATCTGCTTCAGCGTAAACATCTGAAGGTAAGATCTGCTA
322 CAGAGAGATAAGATC--TCATCTTGGATCCACTTCAGCATAAACATCTGAAGGTAAGATCTGCTA
*
8602561 TGTGTCTGCCTTCCATCAAAGTGGAAATGCCAGA
385 TGTGTCTGCCTTCCATCAAAGTGGAAATGCCAAA
8602595 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* *
8602660 GTAAAAGCCAAATCAGCTATATCTTCGATTTGCTCCTTGCCGAATACAGAGAGATAAGATCTGTC
66 GTGAAAGCCAAATCAACTATATCTTCGATTTGCTCCTTGCCGAATACAGAGAGATAAGATCTGTC
* *
8602725 ATCTTGGATCTGCTTCAGCGTAAACA-TCTGAAAGTAAGATCTGCTATGTGTCTGC-CTTCTATC
131 ATCTTGGATCTGCTTCAGCATAAACATTC-GAAAGCAAGATCTGCTATGTGTCTGCTC-TCTATC
* *
8602788 AAAGTGGAA-ATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACGAAAAATCATCTTAGAT
194 AAAGT-GAAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGAAAAATCATCTTAGAT
* * * * * *
8602852 TTGCTTTAACGTAAACACGTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTG-TAAACAC
258 TTGCTTCAACGAAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGTTCCCTGCCAAACAC
* *
8602916 A-AG-GATGCCAA-A-C-CATCTTGTATCCACTTCAGCATAAACATCTGAAGGTCAGATCTGCTA
323 AGAGAGAT---AAGATCTCATCTTGGATCCACTTCAGCATAAACATCTGAAGGTAAGATCTGCTA
*
8602976 TGTGTCTGTTCTT-CATCAAAGT-GAAGATGCCAAA
385 TGTGTCTG-CCTTCCATCAAAGTGGAA-ATGCCAAA
* *
8603010 CTTCGATTCGTTCTCTGACATTACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
* **
8603075 GTGAAAGCCAAATCAACTATATCTTCGATATGCTCCCCGCCGAATACAGAGAGATAAGATCTGTC
66 GTGAAAGCCAAATCAACTATATCTTCGATTTGCTCCTTGCCGAATACAGAGAGATAAGATCTGTC
*
8603140 ATCTTAGATCTGC
131 ATCTTGGATCTGC
8603153 CTCGATGAAG
Statistics
Matches: 493, Mismatches: 47, Indels: 35
0.86 0.08 0.06
Matches are distributed among these distances:
413 4 0.01
414 81 0.16
415 221 0.45
416 6 0.01
417 4 0.01
418 3 0.01
419 9 0.02
420 162 0.33
421 3 0.01
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.29
Consensus pattern (418 bp):
CTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCATCGTAAACAC
GTGAAAGCCAAATCAACTATATCTTCGATTTGCTCCTTGCCGAATACAGAGAGATAAGATCTGTC
ATCTTGGATCTGCTTCAGCATAAACATTCGAAAGCAAGATCTGCTATGTGTCTGCTCTCTATCAA
AGTGAAGATGCCAAACTTCGATTCGTTCTCTGACAATACAGAGACGAAAAATCATCTTAGATTTG
CTTCAACGAAAACACGTGAAAGCCAAATCAGCTATATCTTCGATCTGTTCCCTGCCAAACACAGA
GAGATAAGATCTCATCTTGGATCCACTTCAGCATAAACATCTGAAGGTAAGATCTGCTATGTGTC
TGCCTTCCATCAAAGTGGAAATGCCAAA
Found at i:8611163 original size:13 final size:15
Alignment explanation
Indices: 8611133--8611163 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
8611123 TTTCAGATTT
8611133 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
8611148 TCTTTTCTACCTCTC
1 TCTTTTCTACCTCTC
8611163 T
1 T
8611164 GGAAAGTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.39, G:0.00, T:0.55
Consensus pattern (15 bp):
TCTTTTCTACCTCTC
Found at i:8611248 original size:15 final size:14
Alignment explanation
Indices: 8611206--8611255 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
8611196 TATAACTTGA
*
8611206 ATGCAAATGATGTG
1 ATGCAAATGATGAG
8611220 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
8611235 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
8611249 ATGCAAA
1 ATGCAAA
8611256 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:8615137 original size:24 final size:23
Alignment explanation
Indices: 8615068--8615131 Score: 78
Period size: 21 Copynumber: 2.8 Consensus size: 23
8615058 ATAAAAATAC
*
8615068 AATATTAAAAGATATACATATAT
1 AATATTAAAATATATACATATAT
*
8615091 -ATA-TAAAATGTATACATAATAT
1 AATATTAAAATATATACAT-ATAT
*
8615113 AATATTAAAATATTTACAT
1 AATATTAAAATATATACAT
8615132 GGTATATACA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
21 12 0.35
22 7 0.21
23 3 0.09
24 12 0.35
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.38
Consensus pattern (23 bp):
AATATTAAAATATATACATATAT
Found at i:8615744 original size:39 final size:38
Alignment explanation
Indices: 8615640--8615789 Score: 194
Period size: 39 Copynumber: 3.9 Consensus size: 38
8615630 ATTCCACTCC
* * *
8615640 CCCCATGCTACTTTGTTTTATTATTAATCAAAAAC-ACT
1 CCCCATACTATTTTGTTTTATTATTAAT-TAAAACTACT
* * *
8615678 CCTCATGCTATTTTGTTTTATTATTAATTAAAACTATTT
1 CCCCATACTATTTTGTTTTATTATTAATTAAAACTA-CT
*
8615717 CCCCATACTATTTTGTTTTATTGTTAATTAAAACTACCT
1 CCCCATACTATTTTGTTTTATTATTAATTAAAACTA-CT
*
8615756 CCTCATACTATTTTGTTTTATTATTAATTAAAAC
1 CCCCATACTATTTTGTTTTATTATTAATTAAAAC
8615790 CATACTTTAT
Statistics
Matches: 99, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
37 5 0.05
38 27 0.27
39 67 0.68
ACGTcount: A:0.30, C:0.18, G:0.05, T:0.47
Consensus pattern (38 bp):
CCCCATACTATTTTGTTTTATTATTAATTAAAACTACT
Found at i:8615776 original size:78 final size:77
Alignment explanation
Indices: 8615640--8615789 Score: 230
Period size: 78 Copynumber: 1.9 Consensus size: 77
8615630 ATTCCACTCC
* *
8615640 CCCCATGCTACTTTGTTTTATTATTAATCAAAAACACTCCTCATGCTATTTTGTTTTATTATTAA
1 CCCCATACTACTTTGTTTTATTATTAATCAAAAACACTCCTCATACTATTTTGTTTTATTATTAA
8615705 TTAAAACTATTT
66 TTAAAACTATTT
* * *
8615717 CCCCATACTATTTTGTTTTATTGTTAAT-TAAAACTACCTCCTCATACTATTTTGTTTTATTATT
1 CCCCATACTACTTTGTTTTATTATTAATCAAAAAC-A-CTCCTCATACTATTTTGTTTTATTATT
8615781 AATTAAAAC
64 AATTAAAAC
8615790 CATACTTTAT
Statistics
Matches: 66, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
76 5 0.08
77 26 0.39
78 35 0.53
ACGTcount: A:0.30, C:0.18, G:0.05, T:0.47
Consensus pattern (77 bp):
CCCCATACTACTTTGTTTTATTATTAATCAAAAACACTCCTCATACTATTTTGTTTTATTATTAA
TTAAAACTATTT
Found at i:8625940 original size:32 final size:31
Alignment explanation
Indices: 8625904--8625965 Score: 88
Period size: 32 Copynumber: 2.0 Consensus size: 31
8625894 AAAACACTTA
*
8625904 ACATTTTAGTGACTTAAATAAAAAACTTTTGC
1 ACATTTCAGTGACTTAAAT-AAAAACTTTTGC
**
8625936 ACATTTCAGTGGTTTAAATAAAAACTTTTG
1 ACATTTCAGTGACTTAAATAAAAACTTTTG
8625966 AATAGTCCAG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 11 0.41
32 16 0.59
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (31 bp):
ACATTTCAGTGACTTAAATAAAAACTTTTGC
Found at i:8625977 original size:31 final size:32
Alignment explanation
Indices: 8625917--8625977 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
8625907 TTTTAGTGAC
* * *
8625917 TTAAATAAAAAACTTTTGCACATTTCAGTGGT
1 TTAAATAAAAAACTTTTGAACAGTCCAGTGGT
*
8625949 TTAAAT-AAAAACTTTTGAATAGTCCAGTG
1 TTAAATAAAAAACTTTTGAACAGTCCAGTG
8625978 ATCATTTTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
31 19 0.76
32 6 0.24
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.36
Consensus pattern (32 bp):
TTAAATAAAAAACTTTTGAACAGTCCAGTGGT
Found at i:8627715 original size:26 final size:24
Alignment explanation
Indices: 8627685--8627732 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 24
8627675 GCAAGGGAAT
*
8627685 AGGGAAAGGAAATGAGGAAAAATGCA
1 AGGG-AAGGAAAAGA-GAAAAATGCA
*
8627711 AGGGAATGAAAAGAGAAAAATG
1 AGGGAAGGAAAAGAGAAAAATG
8627733 AGAAAGAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 8 0.40
25 8 0.40
26 4 0.20
ACGTcount: A:0.56, C:0.02, G:0.33, T:0.08
Consensus pattern (24 bp):
AGGGAAGGAAAAGAGAAAAATGCA
Found at i:8629930 original size:22 final size:22
Alignment explanation
Indices: 8629879--8629930 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 22
8629869 AAAAGATATT
*
8629879 TATTATTATTTATAATTATTTAA
1 TATTA-TATTTATAATTATATAA
8629902 -ATATATATTTATAATTATATAA
1 TAT-TATATTTATAATTATATAA
8629924 TATTATA
1 TATTATA
8629931 AGATTTTTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
22 22 0.85
23 4 0.15
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
TATTATATTTATAATTATATAA
Found at i:8632415 original size:32 final size:32
Alignment explanation
Indices: 8632374--8632439 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
8632364 TAGCTTTCCT
8632374 TAATTTATTCACAATTCAATATCAATAAACTA
1 TAATTTATTCACAATTCAATATCAATAAACTA
8632406 TAATTTATTCACAATTCAATATCAATAAACTA
1 TAATTTATTCACAATTCAATATCAATAAACTA
8632438 TA
1 TA
8632440 TTCAACTATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (32 bp):
TAATTTATTCACAATTCAATATCAATAAACTA
Found at i:8632855 original size:23 final size:22
Alignment explanation
Indices: 8632828--8632877 Score: 84
Period size: 21 Copynumber: 2.3 Consensus size: 22
8632818 TGCCTAAAAC
8632828 GACACACGAGGTGCCTG-ATAT
1 GACACACGAGGTGCCTGAATAT
8632849 GACACACGAGGTGCCTGAAATAT
1 GACACACGAGGTGCCTG-AATAT
8632872 GACACA
1 GACACA
8632878 TAAAGTGCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 17 0.63
23 10 0.37
ACGTcount: A:0.34, C:0.24, G:0.26, T:0.16
Consensus pattern (22 bp):
GACACACGAGGTGCCTGAATAT
Found at i:8632885 original size:23 final size:23
Alignment explanation
Indices: 8632807--8632889 Score: 75
Period size: 21 Copynumber: 3.8 Consensus size: 23
8632797 ATACTAGTAC
* *
8632807 GACACATAAAGTGCCT-AAA-AC
1 GACACACAAAGTGCCTGAAATAT
* *
8632828 GACACACGAGGTGCCTG--ATAT
1 GACACACAAAGTGCCTGAAATAT
* *
8632849 GACACACGAGGTGCCTGAAATAT
1 GACACACAAAGTGCCTGAAATAT
*
8632872 GACACATAAAGTGCCTGA
1 GACACACAAAGTGCCTGA
8632890 TCGGTAAAGC
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
20 1 0.02
21 31 0.61
23 19 0.37
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (23 bp):
GACACACAAAGTGCCTGAAATAT
Found at i:8633285 original size:15 final size:15
Alignment explanation
Indices: 8633260--8633317 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
8633250 TCATATATAT
8633260 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
8633276 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
8633291 AATAATTTCAATCAA
1 TATAAATTCAATCAA
8633306 TATAAATTCAAT
1 TATAAATTCAAT
8633318 AAATTCATCA
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:8634750 original size:21 final size:20
Alignment explanation
Indices: 8634725--8634789 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 20
8634715 GATAGTTACA
8634725 GAATAACTAAATTACTGTATT
1 GAATAACTAAA-TACTGTATT
** *
8634746 GAATAA-TTGATAGT-TATT
1 GAATAACTAAATACTGTATT
*
8634764 GAATAACTAAACTACTGCATT
1 GAATAACTAAA-TACTGTATT
8634785 GAATA
1 GAATA
8634790 TTTGATAGTT
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 10 0.29
19 5 0.15
20 5 0.15
21 14 0.41
ACGTcount: A:0.43, C:0.09, G:0.12, T:0.35
Consensus pattern (20 bp):
GAATAACTAAATACTGTATT
Found at i:8634752 original size:39 final size:39
Alignment explanation
Indices: 8634698--8634839 Score: 167
Period size: 39 Copynumber: 3.6 Consensus size: 39
8634688 GTTACAAAAC
*
8634698 TACTGTACTGAATAATTGATAGTTACAGAATAACTAAAT
1 TACTGTACTGAATAATTGATAGTTACTGAATAACTAAAT
* * *
8634737 TACTGTATTGAATAATTGATAGTTATTGAATAACTAAAC
1 TACTGTACTGAATAATTGATAGTTACTGAATAACTAAAT
* * * **
8634776 TACTGCATTGAATATTTGATAGTTACTGAATGCCTAAAT
1 TACTGTACTGAATAATTGATAGTTACTGAATAACTAAAT
* * * *
8634815 GACTATACTGAATAACTGATTGTTA
1 TACTGTACTGAATAATTGATAGTTA
8634840 TTAATTGTTT
Statistics
Matches: 86, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 86 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.37
Consensus pattern (39 bp):
TACTGTACTGAATAATTGATAGTTACTGAATAACTAAAT
Found at i:8634827 original size:78 final size:78
Alignment explanation
Indices: 8634694--8634841 Score: 197
Period size: 78 Copynumber: 1.9 Consensus size: 78
8634684 GGTCGTTACA
* * * * *
8634694 AAACTACTGTACTGAATAATTGATAGTTACAGAATAACTAAATTACTGTATTGAATAATTGATAG
1 AAACTACTGCACTGAATAATTGATAGTTACAGAATAACTAAATGACTATACTGAATAACTGATAG
8634759 TTATTGAATAACT
66 TTATTGAATAACT
* * * ** *
8634772 AAACTACTGCATTGAATATTTGATAGTTACTGAATGCCTAAATGACTATACTGAATAACTGATTG
1 AAACTACTGCACTGAATAATTGATAGTTACAGAATAACTAAATGACTATACTGAATAACTGATAG
8634837 TTATT
66 TTATT
8634842 AATTGTTTGA
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
78 59 1.00
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (78 bp):
AAACTACTGCACTGAATAATTGATAGTTACAGAATAACTAAATGACTATACTGAATAACTGATAG
TTATTGAATAACT
Found at i:8637221 original size:20 final size:21
Alignment explanation
Indices: 8637198--8637237 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
8637188 TCATGACATT
8637198 AAGCCT-AAAGTCACAACACC
1 AAGCCTCAAAGTCACAACACC
*
8637218 AAGCCTCCAAGGTCACAACA
1 AAGCCT-CAAAGTCACAACA
8637238 TCACTAGTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
22 11 0.65
ACGTcount: A:0.42, C:0.35, G:0.12, T:0.10
Consensus pattern (21 bp):
AAGCCTCAAAGTCACAACACC
Found at i:8650191 original size:6 final size:6
Alignment explanation
Indices: 8650180--8650214 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
8650170 CGTTGCTCTG
8650180 CAAAAA CAAAAA C-AAAA CAAAAA CAAAAA CAAAAA
1 CAAAAA CAAAAA CAAAAA CAAAAA CAAAAA CAAAAA
8650215 ACCATAATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00
Consensus pattern (6 bp):
CAAAAA
Found at i:8650198 original size:11 final size:12
Alignment explanation
Indices: 8650180--8650214 Score: 63
Period size: 11 Copynumber: 3.0 Consensus size: 12
8650170 CGTTGCTCTG
8650180 CAAAAACAAAAA
1 CAAAAACAAAAA
8650192 C-AAAACAAAAA
1 CAAAAACAAAAA
8650203 CAAAAACAAAAA
1 CAAAAACAAAAA
8650215 ACCATAATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 11 0.50
12 11 0.50
ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00
Consensus pattern (12 bp):
CAAAAACAAAAA
Found at i:8650202 original size:17 final size:17
Alignment explanation
Indices: 8650180--8650213 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
8650170 CGTTGCTCTG
8650180 CAAAAACAAAAACAAAA
1 CAAAAACAAAAACAAAA
8650197 CAAAAACAAAAACAAAA
1 CAAAAACAAAAACAAAA
8650214 AACCATAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.82, C:0.18, G:0.00, T:0.00
Consensus pattern (17 bp):
CAAAAACAAAAACAAAA
Found at i:8655510 original size:33 final size:33
Alignment explanation
Indices: 8655439--8655510 Score: 135
Period size: 33 Copynumber: 2.2 Consensus size: 33
8655429 ACGTGTCTTG
*
8655439 AAAGCAAAATATTATCCCAATTCAGATTTTTAT
1 AAAGCTAAATATTATCCCAATTCAGATTTTTAT
8655472 AAAGCTAAATATTATCCCAATTCAGATTTTTAT
1 AAAGCTAAATATTATCCCAATTCAGATTTTTAT
8655505 AAAGCT
1 AAAGCT
8655511 CGGTTAGGGA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.42, C:0.15, G:0.07, T:0.36
Consensus pattern (33 bp):
AAAGCTAAATATTATCCCAATTCAGATTTTTAT
Found at i:8663404 original size:50 final size:50
Alignment explanation
Indices: 8663280--8663528 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
8663270 GATAATAACA
* * ** * *
8663280 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
8663331 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
8663381 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
8663431 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
8663486 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
8663529 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:8663458 original size:100 final size:104
Alignment explanation
Indices: 8663279--8663528 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
8663269 TGATAATAAC
**
8663279 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
8663344 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
8663381 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
8663444 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
8663486 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
8663529 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:8663644 original size:13 final size:13
Alignment explanation
Indices: 8663623--8663654 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
8663613 GCTTGGATCA
*
8663623 TCATCAAATAAAT
1 TCATAAAATAAAT
8663636 TCATAAAATAAAT
1 TCATAAAATAAAT
8663649 TCATAA
1 TCATAA
8663655 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:8663901 original size:30 final size:30
Alignment explanation
Indices: 8663866--8663923 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
8663856 CCTCGACTCT
*
8663866 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
8663896 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
8663924 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:8670995 original size:50 final size:50
Alignment explanation
Indices: 8670871--8671119 Score: 284
Period size: 50 Copynumber: 4.8 Consensus size: 50
8670861 GATAATAACA
* * ** * *
8670871 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
8670922 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
8670972 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
8671022 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
8671077 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
8671120 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 21, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.19
53 2 0.01
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:8671049 original size:100 final size:104
Alignment explanation
Indices: 8670870--8671119 Score: 357
Period size: 100 Copynumber: 2.4 Consensus size: 104
8670860 TGATAATAAC
**
8670870 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
8670935 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
8670972 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
8671035 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
8671077 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
8671120 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:8671235 original size:13 final size:13
Alignment explanation
Indices: 8671214--8671245 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
8671204 GCTTGGATCA
*
8671214 TCATCAAATAAAT
1 TCATAAAATAAAT
8671227 TCATAAAATAAAT
1 TCATAAAATAAAT
8671240 TCATAA
1 TCATAA
8671246 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:8671492 original size:30 final size:30
Alignment explanation
Indices: 8671457--8671514 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
8671447 CCTCGACTCT
*
8671457 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
8671487 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
8671515 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:8681716 original size:17 final size:17
Alignment explanation
Indices: 8681694--8681733 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
8681684 CATATGCCTA
*
8681694 AATATTTTGTTTCTGTT
1 AATATTTTGTTTCTATT
8681711 AATATTTTGTTTCTATT
1 AATATTTTGTTTCTATT
8681728 AATATT
1 AATATT
8681734 CTTTAATGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.25, C:0.05, G:0.07, T:0.62
Consensus pattern (17 bp):
AATATTTTGTTTCTATT
Found at i:8685727 original size:16 final size:17
Alignment explanation
Indices: 8685706--8685740 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
8685696 AATAAAATAT
*
8685706 AATTTTAT-TATTTTAA
1 AATTTTATAAATTTTAA
8685722 AATTTTATAAATTTTAA
1 AATTTTATAAATTTTAA
8685739 AA
1 AA
8685741 GGTTAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
AATTTTATAAATTTTAA
Found at i:8689385 original size:112 final size:110
Alignment explanation
Indices: 8689240--8689684 Score: 572
Period size: 112 Copynumber: 4.1 Consensus size: 110
8689230 ATTTTTAAAA
* *
8689240 AAATTATTTTAAAGTTATTTTGTTAGTAGTTTATGATTAGGTTATAAATTGTTTGTGTTTAGTTT
1 AAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTATTTAGTTT
8689305 AGTGTTTATTGTGATTTTTTATGAATGTAATATTTTTTTCTTTTTTT
66 AGTGTTTATTGTGATTTTTTATGAATGTAA-ATTTTTTT-TTTTTTT
*
8689352 AAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTATTTGTATTTAGTTT
1 AAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTATTTAGTTT
* *
8689417 AGTGTTTATTATGATTTCTTATGAATGTAAATTTTTTTGTTTGTTTTTT
66 AGTGTTTATTGTGATTTTTTATGAATGTAAA--TTTTT-TTT-TTTTTT
*
8689466 AAAATTATTTTAAAGTTATTTTTGTTAGTAATTTATGATTAGGTTTTAAA-TGTTTGTATTTAGT
1 -AAATTATTTTAAAGTTA-TTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTATTTAGT
* *
8689530 TTAGTGTTTATTGTGATTTTGTATGAATTTAAA-------TTTTTTT
64 TTAGTGTTTATTGTGATTTTTTATGAATGTAAATTTTTTTTTTTTTT
* * *
8689570 AATTTTTTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTATTTG--TTTAGTTT
1 AAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTATTTAGTTT
* * * **
8689633 AATGTGTATTGTGATTTGTTAT-AATGT-AATTTTAATTTTTTTT
66 AGTGTTTATTGTGATTTTTTATGAATGTAAATTTTTTTTTTTTTT
* *
8689676 GATTTATTT
1 AAATTATTT
8689685 GATAATTTTT
Statistics
Matches: 297, Mismatches: 22, Indels: 34
0.84 0.06 0.10
Matches are distributed among these distances:
99 2 0.01
100 4 0.01
101 26 0.09
102 30 0.10
103 20 0.07
104 6 0.02
105 1 0.00
106 14 0.05
111 1 0.00
112 90 0.30
113 6 0.02
114 8 0.03
115 59 0.20
116 30 0.10
ACGTcount: A:0.27, C:0.00, G:0.14, T:0.59
Consensus pattern (110 bp):
AAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTATTTAGTTT
AGTGTTTATTGTGATTTTTTATGAATGTAAATTTTTTTTTTTTTT
Found at i:8689535 original size:227 final size:214
Alignment explanation
Indices: 8689239--8689665 Score: 622
Period size: 227 Copynumber: 1.9 Consensus size: 214
8689229 AATTTTTAAA
* *
8689239 AAAATTATTTTAAAGTTATTTTGTTAGTAGTTTATGATTAGGTTATAAATTGTTTGTGTTTAGTT
1 AAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTATTTAGTT
*
8689304 TAGTGTTTATTGTGATTTTTTATGAATGTAATATTTTTTTCTTTTTTTAAATTATTTTAAAGTTA
66 TAGTGTTTATTGTGATTTTGTATGAATGTAA-A--------TTTTTTTAAATTATTTTAAAGTTA
* *
8689369 TTTTGTTAGTAATTTATGATTAGGTTATAAATTATTTGTATTTAGTTTAGTGTTTATTATGATTT
122 TTTTGTTAGTAATTTATGATTAGGTTATAAATTATTTG--TTTAGTTTAATGTGTATTATGATTT
8689434 CTTATGAATGTAAATTTTTTTGTTTGTTTTTT
185 CTTAT-AATGT-AATTTTTTTGTTTGTTTTTT
*
8689466 AAAATTATTTTAAAGTTATTTTTGTTAGTAATTTATGATTAGGTTTTAAA-TGTTTGTATTTAGT
1 AAAATTATTTTAAAGTTA-TTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTATTTAGT
* * *
8689530 TTAGTGTTTATTGTGATTTTGTATGAATTTAAATTTTTTTAATTTTTTTTAAAGTTATTTTGTTA
65 TTAGTGTTTATTGTGATTTTGTATGAATGTAAATTTTTTTAAATTATTTTAAAGTTATTTTGTTA
* *
8689595 GTAATTTATGATTAGGTTATAAATTATTTGTTTAGTTTAATGTGTATTGTGATTTGTTATAATGT
130 GTAATTTATGATTAGGTTATAAATTATTTGTTTAGTTTAATGTGTATTATGATTTCTTATAATGT
8689660 AATTTT
195 AATTTT
8689666 AATTTTTTTT
Statistics
Matches: 188, Mismatches: 11, Indels: 15
0.88 0.05 0.07
Matches are distributed among these distances:
214 6 0.03
215 5 0.03
216 26 0.14
218 60 0.32
226 1 0.01
227 61 0.32
228 29 0.15
ACGTcount: A:0.27, C:0.00, G:0.14, T:0.58
Consensus pattern (214 bp):
AAAATTATTTTAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTATTTAGTT
TAGTGTTTATTGTGATTTTGTATGAATGTAAATTTTTTTAAATTATTTTAAAGTTATTTTGTTAG
TAATTTATGATTAGGTTATAAATTATTTGTTTAGTTTAATGTGTATTATGATTTCTTATAATGTA
ATTTTTTTGTTTGTTTTTT
Found at i:8689920 original size:17 final size:18
Alignment explanation
Indices: 8689888--8689932 Score: 58
Period size: 17 Copynumber: 2.6 Consensus size: 18
8689878 ATGAGAATTT
*
8689888 ATTATATTTTTTATTGTA
1 ATTATATTTATTATTGTA
8689906 ATTATA-TTATTATTGT-
1 ATTATATTTATTATTGTA
*
8689922 ACTATATTTAT
1 ATTATATTTAT
8689933 CGTATTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 5 0.21
17 13 0.54
18 6 0.25
ACGTcount: A:0.31, C:0.02, G:0.04, T:0.62
Consensus pattern (18 bp):
ATTATATTTATTATTGTA
Found at i:8689959 original size:21 final size:20
Alignment explanation
Indices: 8689886--8689960 Score: 51
Period size: 21 Copynumber: 3.5 Consensus size: 20
8689876 AAATGAGAAT
* * *
8689886 TTATTATATTTTTTATTGTAA
1 TTATAATATTATTTACTGT-A
* *
8689907 TTATATTATTATTGTACTATA
1 TTATAATATTATT-TACTGTA
**
8689928 TTTATCGTATTATTTACTGTA
1 -TTATAATATTATTTACTGTA
8689949 TGTATAATATTA
1 T-TATAATATTA
8689961 ATGTTTTTGA
Statistics
Matches: 41, Mismatches: 10, Indels: 6
0.72 0.18 0.11
Matches are distributed among these distances:
20 1 0.02
21 25 0.61
22 15 0.37
ACGTcount: A:0.31, C:0.04, G:0.07, T:0.59
Consensus pattern (20 bp):
TTATAATATTATTTACTGTA
Found at i:8692063 original size:14 final size:14
Alignment explanation
Indices: 8692044--8692070 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
8692034 TTTAATTCTA
8692044 CAAAAATATAAATG
1 CAAAAATATAAATG
8692058 CAAAAATATAAAT
1 CAAAAATATAAAT
8692071 TTTGTAATTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.07, G:0.04, T:0.22
Consensus pattern (14 bp):
CAAAAATATAAATG
Found at i:8692191 original size:48 final size:48
Alignment explanation
Indices: 8692075--8692232 Score: 155
Period size: 48 Copynumber: 3.3 Consensus size: 48
8692065 ATAAATTTTG
* * * *
8692075 TAATTCAAATTAGATTAATTGCAAC----AAACTTTAGACAAAATTTG
1 TAATTTAAATTAGATTAATTGCAACATTAAAACTTGAAACAAAATTTA
*
8692119 T-ATTTATTTAATTGAGATTTATTGCAACATTAAAACTTGAAACAAAATTTA
1 TAATTTA---AATT-AGATTAATTGCAACATTAAAACTTGAAACAAAATTTA
** * *
8692170 TAATTTAAATTAGATTAATTGCAACATTAAAACGAGGAACAAACTTTA
1 TAATTTAAATTAGATTAATTGCAACATTAAAACTTGAAACAAAATTTA
*
8692218 TAATATAAATTAGAT
1 TAATTTAAATTAGAT
8692233 ATATTGGAGT
Statistics
Matches: 94, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
43 4 0.04
44 1 0.01
46 4 0.04
47 13 0.14
48 46 0.49
49 4 0.04
51 17 0.18
52 5 0.05
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.36
Consensus pattern (48 bp):
TAATTTAAATTAGATTAATTGCAACATTAAAACTTGAAACAAAATTTA
Found at i:8695912 original size:12 final size:12
Alignment explanation
Indices: 8695883--8695915 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
8695873 TAATTAATAA
*
8695883 TTAATAATAAAT
1 TTAAAAATAAAT
8695895 TT-AAAATAAAT
1 TTAAAAATAAAT
8695906 TTAAAAATAA
1 TTAAAAATAA
8695916 TAAAAAGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
TTAAAAATAAAT
Found at i:8700628 original size:28 final size:28
Alignment explanation
Indices: 8700588--8700644 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
8700578 TAGATATTCT
*
8700588 AATTAAGAAATATTCTTTCCTTAAGTTG
1 AATTAAGAAATATTCTTTCCCTAAGTTG
8700616 AATTAAGAAATATTCTTTCCCTAAGTTG
1 AATTAAGAAATATTCTTTCCCTAAGTTG
8700644 A
1 A
8700645 TTCAATCTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.40
Consensus pattern (28 bp):
AATTAAGAAATATTCTTTCCCTAAGTTG
Found at i:8702808 original size:19 final size:19
Alignment explanation
Indices: 8702762--8702809 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
8702752 GTATATATTT
8702762 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
8702780 TAAATCTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
8702799 TAAGTTTTATT
1 TAAATTTTATT
8702810 CATATTATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:8702890 original size:42 final size:42
Alignment explanation
Indices: 8702826--8702914 Score: 133
Period size: 42 Copynumber: 2.1 Consensus size: 42
8702816 ATAAGAATAT
* * * *
8702826 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAGCTA
1 TTTTCTTTTATATTTTAATAGTTTATTAGAATAAGGGAACTA
*
8702868 TTTTCTTTTATATTTTAATAGTTTATTAGAATAAGTGAACTA
1 TTTTCTTTTATATTTTAATAGTTTATTAGAATAAGGGAACTA
8702910 TTTTC
1 TTTTC
8702915 CTAATTAGGA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.29, C:0.06, G:0.12, T:0.53
Consensus pattern (42 bp):
TTTTCTTTTATATTTTAATAGTTTATTAGAATAAGGGAACTA
Found at i:8706053 original size:19 final size:19
Alignment explanation
Indices: 8706007--8706054 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
8705997 GTATATATTT
8706007 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
* *
8706025 TAAATCTTATTTAGTTAGA
1 TAAATTTTATTTAGGTAGA
*
8706044 TAAGTTTTATT
1 TAAATTTTATT
8706055 CATATTCTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
18 4 0.16
19 21 0.84
ACGTcount: A:0.35, C:0.02, G:0.12, T:0.50
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:8706130 original size:42 final size:42
Alignment explanation
Indices: 8706071--8706158 Score: 158
Period size: 42 Copynumber: 2.1 Consensus size: 42
8706061 CTAGGAATAT
8706071 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
* *
8706113 TTTTCTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAACTA
1 TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
8706155 TTTT
1 TTTT
8706159 TCTAATTAGG
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.28, C:0.05, G:0.15, T:0.52
Consensus pattern (42 bp):
TTTTATTTTATCTTTTAGTAGTTTATTAGAATAAGGGAACTA
Found at i:8710926 original size:3 final size:3
Alignment explanation
Indices: 8710918--8710948 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
8710908 CCTTTTACCC
*
8710918 CAT CAT CAT CAT CAT CAT TAT CAT CAT CAT C
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT C
8710949 GAGAACAACG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.32, C:0.32, G:0.00, T:0.35
Consensus pattern (3 bp):
CAT
Found at i:8718095 original size:105 final size:105
Alignment explanation
Indices: 8717908--8718205 Score: 348
Period size: 105 Copynumber: 2.8 Consensus size: 105
8717898 GGCAAAGTGC
* * * * *
8717908 GAAATATAGGTATGGTA-TAACCATACCGAGTTGTGAAATGTAGGTATAGCGTCGTCCATACTGA
1 GAAACATAGGTATGGTATTAACCATACCGAGTTGTGAAATGTAGGTATGGCATCATCCATACCGA
* * * * * *
8717972 GCTATGATACGTGGGTATGGTATTAACCATACAGAGTTGT
66 GTTGTGAAATGTAGGTATGGTATTAACCATACAGAGTTGA
* * * * *
8718012 GAAACGTAGGTATGGTATTAACCATACCGAGATGTGAAACGTAGGTATGGTATCATCTATACCGA
1 GAAACATAGGTATGGTATTAACCATACCGAGTTGTGAAATGTAGGTATGGCATCATCCATACCGA
* * *
8718077 GTTGTGAAATGTAGGTATGGTATCATCCATACCGAGTTGA
66 GTTGTGAAATGTAGGTATGGTATTAACCATACAGAGTTGA
* * ** * *
8718117 GAAACATAGGTATGGTATTATCCATACTGAGTTAAGAAGTGTAGGTATGGCAT-TTCCCATACCG
1 GAAACATAGGTATGGTATTAACCATACCGAGTTGTGAAATGTAGGTATGGCATCAT-CCATACCG
8718181 AGTTGTGAAATGTAGGTATGGTATT
65 AGTTGTGAAATGTAGGTATGGTATT
8718206 TCAATGAGGA
Statistics
Matches: 161, Mismatches: 31, Indels: 3
0.83 0.16 0.02
Matches are distributed among these distances:
104 16 0.10
105 145 0.90
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (105 bp):
GAAACATAGGTATGGTATTAACCATACCGAGTTGTGAAATGTAGGTATGGCATCATCCATACCGA
GTTGTGAAATGTAGGTATGGTATTAACCATACAGAGTTGA
Found at i:8718207 original size:35 final size:34
Alignment explanation
Indices: 8717908--8718207 Score: 269
Period size: 35 Copynumber: 8.6 Consensus size: 34
8717898 GGCAAAGTGC
* **
8717908 GAAATATAGGTATGGTATAACCATACCGAGTTGT
1 GAAATGTAGGTATGGTATTTCCATACCGAGTTGT
** * * *
8717942 GAAATGTAGGTATAGCGT-CGTCCATACTGAGCTAT
1 GAAATGTAGGTAT-G-GTATTTCCATACCGAGTTGT
* * * * *
8717977 GATACGTGGGTATGGTATTAACCATACAGAGTTGT
1 GAAATGTAGGTATGGTATT-TCCATACCGAGTTGT
* * *
8718012 GAAACGTAGGTATGGTATTAACCATACCGAGATGT
1 GAAATGTAGGTATGGTATT-TCCATACCGAGTTGT
* * *
8718047 GAAACGTAGGTATGGTATCATCTATACCGAGTTGT
1 GAAATGTAGGTATGGTAT-TTCCATACCGAGTTGT
* *
8718082 GAAATGTAGGTATGGTATCATCCATACCGAGTTGA
1 GAAATGTAGGTATGGTAT-TTCCATACCGAGTTGT
** * **
8718117 GAAACATAGGTATGGTATTATCCATACTGAGTTAA
1 GAAATGTAGGTATGGTATT-TCCATACCGAGTTGT
* *
8718152 GAAGTGTAGGTATGGCATTTCCCATACCGAGTTGT
1 GAAATGTAGGTATGGTATTT-CCATACCGAGTTGT
8718187 GAAATGTAGGTATGGTATTTC
1 GAAATGTAGGTATGGTATTTC
8718208 AATGAGGAAA
Statistics
Matches: 218, Mismatches: 41, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
33 2 0.01
34 15 0.07
35 199 0.91
36 2 0.01
ACGTcount: A:0.31, C:0.13, G:0.26, T:0.30
Consensus pattern (34 bp):
GAAATGTAGGTATGGTATTTCCATACCGAGTTGT
Found at i:8718512 original size:35 final size:35
Alignment explanation
Indices: 8718320--8718509 Score: 265
Period size: 35 Copynumber: 5.4 Consensus size: 35
8718310 TTGAATTTAT
8718320 ATGTAGGTATGGTATCATCCATACCGAGTTGAGAA
1 ATGTAGGTATGGTATCATCCATACCGAGTTGAGAA
* *
8718355 ATGTAGGTATGGTATCATCCATACTGAGTTGTGAA
1 ATGTAGGTATGGTATCATCCATACCGAGTTGAGAA
*
8718390 ACGTAGGTATGGTATCATCCATACCGAGTTGAGAA
1 ATGTAGGTATGGTATCATCCATACCGAGTTGAGAA
* * * *
8718425 ATATAGGTATGGTATTATCCATACTGAGTTAAGAA
1 ATGTAGGTATGGTATCATCCATACCGAGTTGAGAA
* * * *
8718460 GTGTAGGTATGGCAT-TTCCCATACCGAGTTGTGAA
1 ATGTAGGTATGGTATCAT-CCATACCGAGTTGAGAA
8718495 ATGTAGGTATGGTAT
1 ATGTAGGTATGGTAT
8718510 TTCAATGAGG
Statistics
Matches: 135, Mismatches: 19, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
34 1 0.01
35 134 0.99
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.32
Consensus pattern (35 bp):
ATGTAGGTATGGTATCATCCATACCGAGTTGAGAA
Found at i:8718568 original size:305 final size:305
Alignment explanation
Indices: 8718017--8718627 Score: 1123
Period size: 305 Copynumber: 2.0 Consensus size: 305
8718007 GTTGTGAAAC
* * *
8718017 GTAGGTATGGTATTAACCATACCGAGATGTGAAACGTAGGTATGGTATCATCTATACCGAGTTGT
1 GTAGGTATGGTATCAACCATACCGAGATGAGAAACGTAGGTATGGTATCATCCATACCGAGTTGT
*
8718082 GAAATGTAGGTATGGTATCATCCATACCGAGTTGAGAAACATAGGTATGGTATTATCCATACTGA
66 GAAACGTAGGTATGGTATCATCCATACCGAGTTGAGAAACATAGGTATGGTATTATCCATACTGA
8718147 GTTAAGAAGTGTAGGTATGGCATTTCCCATACCGAGTTGTGAAATGTAGGTATGGTATTTCAATG
131 GTTAAGAAGTGTAGGTATGGCATTTCCCATACCGAGTTGTGAAATGTAGGTATGGTATTTCAATG
* *
8718212 AGGAAAACCATACTGAGTTATGAATCGTAGCACTGGGTAATGACGTACTCAATTTCATAAGACGT
196 AGGAAAACCATACTGAGTTATGAATCGTAGCACTGAGTAACGACGTACTCAATTTCATAAGACGT
8718277 TCTCCAATTTGACAAAGTTTTGGTAATTATTATTTGAATTTATAT
261 TCTCCAATTTGACAAAGTTTTGGTAATTATTATTTGAATTTATAT
* * * *
8718322 GTAGGTATGGTATCATCCATACCGAGTTGAGAAATGTAGGTATGGTATCATCCATACTGAGTTGT
1 GTAGGTATGGTATCAACCATACCGAGATGAGAAACGTAGGTATGGTATCATCCATACCGAGTTGT
*
8718387 GAAACGTAGGTATGGTATCATCCATACCGAGTTGAGAAATATAGGTATGGTATTATCCATACTGA
66 GAAACGTAGGTATGGTATCATCCATACCGAGTTGAGAAACATAGGTATGGTATTATCCATACTGA
8718452 GTTAAGAAGTGTAGGTATGGCATTTCCCATACCGAGTTGTGAAATGTAGGTATGGTATTTCAATG
131 GTTAAGAAGTGTAGGTATGGCATTTCCCATACCGAGTTGTGAAATGTAGGTATGGTATTTCAATG
8718517 AGGAAAACCATACTGAGTTATGAATCGTAGCACTGAGTAACGACGTACTCAATTTCATAAGACGT
196 AGGAAAACCATACTGAGTTATGAATCGTAGCACTGAGTAACGACGTACTCAATTTCATAAGACGT
8718582 TCTCCAATTTGACAAAGTTTTGGTAATTATTATTTGAATTTATAT
261 TCTCCAATTTGACAAAGTTTTGGTAATTATTATTTGAATTTATAT
8718627 G
1 G
8718628 ACAGATTTTA
Statistics
Matches: 295, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
305 295 1.00
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.33
Consensus pattern (305 bp):
GTAGGTATGGTATCAACCATACCGAGATGAGAAACGTAGGTATGGTATCATCCATACCGAGTTGT
GAAACGTAGGTATGGTATCATCCATACCGAGTTGAGAAACATAGGTATGGTATTATCCATACTGA
GTTAAGAAGTGTAGGTATGGCATTTCCCATACCGAGTTGTGAAATGTAGGTATGGTATTTCAATG
AGGAAAACCATACTGAGTTATGAATCGTAGCACTGAGTAACGACGTACTCAATTTCATAAGACGT
TCTCCAATTTGACAAAGTTTTGGTAATTATTATTTGAATTTATAT
Found at i:8720619 original size:8 final size:8
Alignment explanation
Indices: 8720606--8720635 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
8720596 TTTTATGTTT
8720606 TAATATAA
1 TAATATAA
8720614 TAATATAA
1 TAATATAA
8720622 TAATATAA
1 TAATATAA
8720630 TAATAT
1 TAATAT
8720636 TTAAAATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
TAATATAA
Found at i:8727808 original size:12 final size:12
Alignment explanation
Indices: 8727775--8727816 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
8727765 TATGCTCCAC
*
8727775 AAAAGAAAA-AA
1 AAAATAAAATAA
8727786 AAAATTAAAAATAA
1 AAAA-T-AAAATAA
8727800 AAAATAAAATAA
1 AAAATAAAATAA
8727812 AAAAT
1 AAAAT
8727817 CCCTCAGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 4 0.15
12 12 0.44
13 5 0.19
14 6 0.22
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.14
Consensus pattern (12 bp):
AAAATAAAATAA
Found at i:8727808 original size:19 final size:18
Alignment explanation
Indices: 8727775--8727816 Score: 57
Period size: 19 Copynumber: 2.3 Consensus size: 18
8727765 TATGCTCCAC
* *
8727775 AAAAGAAAAAAAAAATTA
1 AAAATAAAAAAAAAATAA
8727793 AAAATAAAAAATAAAATAA
1 AAAATAAAAAA-AAAATAA
8727812 AAAAT
1 AAAAT
8727817 CCCTCAGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.14
Consensus pattern (18 bp):
AAAATAAAAAAAAAATAA
Found at i:8733654 original size:45 final size:45
Alignment explanation
Indices: 8733590--8733680 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
8733580 GACGTAAATA
8733590 TATTTGGCTAATATATAAATTTTAATATTAATTTAACATGATTAT
1 TATTTGGCTAATATATAAATTTTAATATTAATTTAACATGATTAT
*
8733635 TATTTGGCTAATATATAAATTTTAATATTAATTTAGCATGATTAT
1 TATTTGGCTAATATATAAATTTTAATATTAATTTAACATGATTAT
8733680 T
1 T
8733681 GAACTTTCTT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.49
Consensus pattern (45 bp):
TATTTGGCTAATATATAAATTTTAATATTAATTTAACATGATTAT
Found at i:8733663 original size:25 final size:25
Alignment explanation
Indices: 8733589--8733663 Score: 65
Period size: 25 Copynumber: 3.2 Consensus size: 25
8733579 TGACGTAAAT
8733589 ATATTTGGCTAATATATAAATTTTA
1 ATATTTGGCTAATATATAAATTTTA
*
8733614 ATA--T---TAAT-T-TAACATGATTA
1 ATATTTGGCTAATATATAA-AT-TTTA
*
8733634 TTATTTGGCTAATATATAAATTTTA
1 ATATTTGGCTAATATATAAATTTTA
8733659 ATATT
1 ATATT
8733664 AATTTAGCAT
Statistics
Matches: 37, Mismatches: 4, Indels: 18
0.63 0.07 0.31
Matches are distributed among these distances:
18 3 0.08
19 3 0.08
20 9 0.24
22 1 0.03
23 1 0.03
25 14 0.38
26 3 0.08
27 3 0.08
ACGTcount: A:0.40, C:0.04, G:0.07, T:0.49
Consensus pattern (25 bp):
ATATTTGGCTAATATATAAATTTTA
Found at i:8746244 original size:36 final size:36
Alignment explanation
Indices: 8746192--8746263 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
8746182 ATCATAGGGA
*
8746192 AAAATGGAGGATTTCTTATGTAATCGATGTAATTTT
1 AAAACGGAGGATTTCTTATGTAATCGATGTAATTTT
8746228 AAAACGGAGGATTTCTTATGTAATCGATGTAATTTT
1 AAAACGGAGGATTTCTTATGTAATCGATGTAATTTT
8746264 TCTCTATTTC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.33, C:0.07, G:0.19, T:0.40
Consensus pattern (36 bp):
AAAACGGAGGATTTCTTATGTAATCGATGTAATTTT
Found at i:8751165 original size:6 final size:6
Alignment explanation
Indices: 8751156--8751219 Score: 51
Period size: 6 Copynumber: 10.7 Consensus size: 6
8751146 TACCTTGAGC
* * * * *
8751156 TCATCT TCATCT TCATCGT T-GTCT TAATCT TCATCT CCA-CAC TCAACT
1 TCATCT TCATCT TCATC-T TCATCT TCATCT TCATCT TCATC-T TCATCT
8751204 TCATCT TCATCT TCAT
1 TCATCT TCATCT TCAT
8751220 TGGCTTCCTC
Statistics
Matches: 46, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
5 3 0.07
6 40 0.87
7 3 0.07
ACGTcount: A:0.20, C:0.33, G:0.03, T:0.44
Consensus pattern (6 bp):
TCATCT
Found at i:8753380 original size:16 final size:18
Alignment explanation
Indices: 8753341--8753384 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 18
8753331 AACTTGAGAA
8753341 AATTGAGAGAATTAAGAG
1 AATTGAGAGAATTAAGAG
* *
8753359 AGTTGAGAG-TTTAA-AG
1 AATTGAGAGAATTAAGAG
8753375 AATTGAGAGA
1 AATTGAGAGA
8753385 GTTGGATTTG
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
16 10 0.45
17 4 0.18
18 8 0.36
ACGTcount: A:0.45, C:0.00, G:0.30, T:0.25
Consensus pattern (18 bp):
AATTGAGAGAATTAAGAG
Found at i:8757574 original size:17 final size:17
Alignment explanation
Indices: 8757552--8757591 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
8757542 ATATGATGAG
8757552 TAATATTATTAATTTGT
1 TAATATTATTAATTTGT
8757569 TAATATTATTAATTTGT
1 TAATATTATTAATTTGT
8757586 T-ATATT
1 TAATATT
8757592 TTGGTCATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 5 0.22
17 18 0.78
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (17 bp):
TAATATTATTAATTTGT
Found at i:8758250 original size:15 final size:14
Alignment explanation
Indices: 8758219--8758252 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
8758209 TTATAAAATG
8758219 AAAAAAATAATTGA
1 AAAAAAATAATTGA
8758233 AAAATAAAT-ATTGA
1 AAAA-AAATAATTGA
8758247 AAAAAA
1 AAAAAA
8758253 GTTATAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 2 0.11
14 13 0.68
15 4 0.21
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.21
Consensus pattern (14 bp):
AAAAAAATAATTGA
Found at i:8765491 original size:32 final size:32
Alignment explanation
Indices: 8765455--8765519 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
8765445 TTTTTTTAAG
*
8765455 AACAAATCAAGTCAATACAATATAGAAATCAT
1 AACAAATCAAGTCAATACAATATAAAAATCAT
8765487 AACAAATCAAGTCAATACAATATAAAAATCAT
1 AACAAATCAAGTCAATACAATATAAAAATCAT
8765519 A
1 A
8765520 CTTCATGATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.58, C:0.15, G:0.05, T:0.22
Consensus pattern (32 bp):
AACAAATCAAGTCAATACAATATAAAAATCAT
Found at i:8766613 original size:6 final size:6
Alignment explanation
Indices: 8766604--8766648 Score: 90
Period size: 6 Copynumber: 7.5 Consensus size: 6
8766594 AATAAAATTG
8766604 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAA
8766649 GATAAGAGGA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:8776074 original size:4 final size:4
Alignment explanation
Indices: 8776065--8776093 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
8776055 ATTTGCACTC
8776065 TATT TATT TATT TA-T TATT TATT TATT TA
1 TATT TATT TATT TATT TATT TATT TATT TA
8776094 ATTTCCCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
3 3 0.12
4 21 0.88
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (4 bp):
TATT
Found at i:8776083 original size:15 final size:15
Alignment explanation
Indices: 8776065--8776093 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8776055 ATTTGCACTC
8776065 TATTTATTTATTTAT
1 TATTTATTTATTTAT
8776080 TATTTATTTATTTA
1 TATTTATTTATTTA
8776094 ATTTCCCATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (15 bp):
TATTTATTTATTTAT
Found at i:8776358 original size:30 final size:30
Alignment explanation
Indices: 8776324--8776384 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
8776314 TTAATTAATC
*
8776324 TTTTACGGATCTTGTAGAATCTATTGTTAA
1 TTTTACGGATCTTGTAGAACCTATTGTTAA
*
8776354 TTTTACGGTTCTTGTAGAACCTATTGTTAA
1 TTTTACGGATCTTGTAGAACCTATTGTTAA
8776384 T
1 T
8776385 CTTGATGAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.25, C:0.11, G:0.16, T:0.48
Consensus pattern (30 bp):
TTTTACGGATCTTGTAGAACCTATTGTTAA
Found at i:8780972 original size:23 final size:23
Alignment explanation
Indices: 8780914--8780960 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
8780904 AAGATGAATG
8780914 ACATGATGCATTGTTATGAGACT
1 ACATGATGCATTGTTATGAGACT
8780937 ACATGATGCATTGTTATGAGACT
1 ACATGATGCATTGTTATGAGACT
8780960 A
1 A
8780961 ACTTGATGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (23 bp):
ACATGATGCATTGTTATGAGACT
Found at i:8791716 original size:46 final size:46
Alignment explanation
Indices: 8791651--8791782 Score: 142
Period size: 46 Copynumber: 2.9 Consensus size: 46
8791641 AGCTCGTATG
* * *
8791651 AGCTTACCGATTTAGCTCGTAAGAGCTTACTATTTTAGCTCATTAA
1 AGCTTACCAATTCAGCTCGTAAGAGCTTACTATTTCAGCTCATTAA
* ** * **
8791697 AGCTTACCAATTCATCTCGTAAGAGCTTACCGTTTCATCTCATTGG
1 AGCTTACCAATTCAGCTCGTAAGAGCTTACTATTTCAGCTCATTAA
* *
8791743 AGCTTACTAATTCAGCTCG-ATAGAGCTTACT-GTTCAGCTC
1 AGCTTACCAATTCAGCTCGTA-AGAGCTTACTATTTCAGCTC
8791783 GATAGAGGTT
Statistics
Matches: 71, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
45 8 0.11
46 63 0.89
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (46 bp):
AGCTTACCAATTCAGCTCGTAAGAGCTTACTATTTCAGCTCATTAA
Found at i:8791733 original size:23 final size:23
Alignment explanation
Indices: 8791640--8791817 Score: 107
Period size: 23 Copynumber: 7.8 Consensus size: 23
8791630 GGACTCACCA
*
8791640 CAGCTCGTATGAGCTTACCGATTT
1 CAGCTCGTAAGAGCTTACC-ATTT
*
8791664 -AGCTCGTAAGAGCTTACTATTT
1 CAGCTCGTAAGAGCTTACCATTT
* * *
8791686 TAGCTCATTAA-AGCTTACCAATT
1 CAGCTC-GTAAGAGCTTACCATTT
* *
8791709 CATCTCGTAAGAGCTTACCGTTT
1 CAGCTCGTAAGAGCTTACCATTT
* * ** * *
8791732 CATCTCATTGGAGCTTACTAATT
1 CAGCTCGTAAGAGCTTACCATTT
8791755 CAGCTCG-ATAGAGCTTA-C-TGTT
1 CAGCTCGTA-AGAGCTTACCAT-TT
* * *
8791777 CAGCTCG-ATAGAGGTTTCCGTTT
1 CAGCTCGTA-AGAGCTTACCATTT
* *
8791800 CAGCTCATAGGAGCTTAC
1 CAGCTCGTAAGAGCTTAC
8791818 TGTCCATCAG
Statistics
Matches: 118, Mismatches: 28, Indels: 17
0.72 0.17 0.10
Matches are distributed among these distances:
22 24 0.20
23 89 0.75
24 5 0.04
ACGTcount: A:0.25, C:0.23, G:0.19, T:0.34
Consensus pattern (23 bp):
CAGCTCGTAAGAGCTTACCATTT
Found at i:8794681 original size:5 final size:5
Alignment explanation
Indices: 8794671--8794724 Score: 99
Period size: 5 Copynumber: 10.8 Consensus size: 5
8794661 GCTAAAATTT
*
8794671 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAGAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
8794721 TAAA
1 TAAA
8794725 TATCCTAGCC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 47 1.00
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:8800882 original size:27 final size:29
Alignment explanation
Indices: 8800852--8800905 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
8800842 TCCGAAATAC
8800852 TGATAT-CATGG-CCCGAAGCCAAATCAG
1 TGATATGCATGGCCCCGAAGCCAAATCAG
8800879 TGATATGCATGGCCCCGAAGCCAAATC
1 TGATATGCATGGCCCCGAAGCCAAATC
8800906 GGTTTATCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
27 6 0.24
28 5 0.20
29 14 0.56
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.19
Consensus pattern (29 bp):
TGATATGCATGGCCCCGAAGCCAAATCAG
Found at i:8804010 original size:13 final size:13
Alignment explanation
Indices: 8803992--8804016 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8803982 CACACATGCA
8803992 ACCTAGCTACATT
1 ACCTAGCTACATT
8804005 ACCTAGCTACAT
1 ACCTAGCTACAT
8804017 ATATCCCGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.32, G:0.08, T:0.28
Consensus pattern (13 bp):
ACCTAGCTACATT
Found at i:8805921 original size:13 final size:14
Alignment explanation
Indices: 8805900--8805932 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
8805890 AGAATGCACA
*
8805900 GGAAGTAAATTG-G
1 GGAAATAAATTGTG
8805913 GGAAATAAATTGTG
1 GGAAATAAATTGTG
8805927 GGAAAT
1 GGAAAT
8805933 CTGAATGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.42, C:0.00, G:0.33, T:0.24
Consensus pattern (14 bp):
GGAAATAAATTGTG
Found at i:8810286 original size:39 final size:39
Alignment explanation
Indices: 8810232--8810333 Score: 159
Period size: 39 Copynumber: 2.6 Consensus size: 39
8810222 TAGATATATA
*
8810232 TATATATGGCACTTAGTGTGCGATTCGAGATAGCTTCGGC
1 TATATAT-GCACTTAGTGTGCGATTCGAAATAGCTTCGGC
* *
8810272 TATATATGCACTTAGTCTGCAATTCGAAATAGCTTCGGC
1 TATATATGCACTTAGTGTGCGATTCGAAATAGCTTCGGC
8810311 TATATATGACACTTAGTGTGCGA
1 TATATATG-CACTTAGTGTGCGA
8810334 GACCGAGATA
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
39 37 0.66
40 19 0.34
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (39 bp):
TATATATGCACTTAGTGTGCGATTCGAAATAGCTTCGGC
Found at i:8818194 original size:23 final size:23
Alignment explanation
Indices: 8818159--8818215 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 23
8818149 ACCCCATTCA
*
8818159 CTACACACTATCTCCAATCATCC
1 CTACACACCATCTCCAATCATCC
* **
8818182 CTACACGCCATCTCTGATCATCC
1 CTACACACCATCTCCAATCATCC
8818205 CTACACACCAT
1 CTACACACCAT
8818216 ATAGGGCATT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.28, C:0.44, G:0.04, T:0.25
Consensus pattern (23 bp):
CTACACACCATCTCCAATCATCC
Found at i:8830335 original size:43 final size:43
Alignment explanation
Indices: 8830211--8830348 Score: 165
Period size: 43 Copynumber: 3.3 Consensus size: 43
8830201 GTCCTAAATG
* * *
8830211 TGGTCTTACATGTAATCACATATCGATGCCACTGTTCCAGACA
1 TGGTCTTACACGTAATCACATATCGATGCCAATGTACCAGACA
* * * ** *
8830254 GGGTC-TACACG-AATCAAATA-CGATACCGGTGTCCCAGACA
1 TGGTCTTACACGTAATCACATATCGATGCCAATGTACCAGACA
*
8830294 TGGTCTTACACGTAATCACATATCGATGCCAATGTACCAGACG
1 TGGTCTTACACGTAATCACATATCGATGCCAATGTACCAGACA
8830337 TGGTCTTACACG
1 TGGTCTTACACG
8830349 AGAACACATA
Statistics
Matches: 78, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
40 20 0.26
41 14 0.18
42 13 0.17
43 31 0.40
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (43 bp):
TGGTCTTACACGTAATCACATATCGATGCCAATGTACCAGACA
Found at i:8832887 original size:27 final size:27
Alignment explanation
Indices: 8832868--8833185 Score: 458
Period size: 27 Copynumber: 11.8 Consensus size: 27
8832858 ATTACCAAAG
8832868 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
8832895 TACCCTCGATTTATAGAATTAACATTT
1 TACCCTCGATTTATAGAATTACCATTT
**
8832922 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
8832949 TACCTTCGATTTACAGAATTAACATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
8832976 TACCCTCGATTTATAGAGTTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
8833003 TACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
8833030 TACCCTCGATTTATAGAA-TACTATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
8833056 TACCCTCGATTTATAGAATTTCCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
8833083 TACCCTTGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* **
8833110 TACCCTTGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
8833137 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
8833164 TACCCTCGATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTAC
8833186 TAAAATACCC
Statistics
Matches: 261, Mismatches: 29, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
26 25 0.10
27 236 0.90
ACGTcount: A:0.29, C:0.20, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:8833194 original size:27 final size:27
Alignment explanation
Indices: 8833164--8833411 Score: 159
Period size: 27 Copynumber: 9.2 Consensus size: 27
8833154 ATTATCGTTT
* *
8833164 TACCCTCGATTTACAAAATTACTAAAA
1 TACCCTCGATTTATAAAATTACCAAAA
* *
8833191 TACCCT-TAGTTTACAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
*
8833218 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTCGATTTA-TAAAATTACCAAAA
* * **
8833245 TACCC-CTGGTTTGTAAAATTATTAAAA
1 TACCCTC-GATTTATAAAATTACCAAAA
* *
8833272 TAACCCT-GGTTTGTAAAATTACCAAAA
1 T-ACCCTCGATTTATAAAATTACCAAAA
* * *
8833299 TACCC-CTAGCTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* * *
8833326 TACCC-CTAGCTTGTAAAATTACCAAAA
1 TACCCTCGA-TTTATAAAATTACCAAAA
* * *
8833353 TACCC-CTGATTTGTGAAATTATCAAAA
1 TACCCTC-GATTTATAAAATTACCAAAA
* * * * *
8833380 TACTCTCGATTTGTAGAATTATCGAAA
1 TACCCTCGATTTATAAAATTACCAAAA
8833407 TACCC
1 TACCC
8833412 CTGTAGGGTA
Statistics
Matches: 186, Mismatches: 24, Indels: 22
0.80 0.10 0.09
Matches are distributed among these distances:
26 8 0.04
27 170 0.91
28 8 0.04
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
TACCCTCGATTTATAAAATTACCAAAA
Found at i:8833340 original size:81 final size:82
Alignment explanation
Indices: 8833178--8833382 Score: 254
Period size: 81 Copynumber: 2.5 Consensus size: 82
8833168 CTCGATTTAC
* ** *
8833178 AAAATTACTAAAAT-ACCCTTAGTTTACAAAATTACCAAAATA-CCCTCGATCAGTAAAATTACC
1 AAAATTACTAAAATAACCC-TGGTTTGTAAAATTACCAAAATACCCCTAGATCAGTAAAATTACC
* *
8833241 AAAATACCCCTGGTTTGT
65 AAAATACCCCTAGCTTGT
* * *
8833259 AAAATTATTAAAATAACCCTGGTTTGTAAAATTACCAAAATACCCCTAGCT-TGTAAAATTACCA
1 AAAATTACTAAAATAACCCTGGTTTGTAAAATTACCAAAATACCCCTAGATCAGTAAAATTACCA
8833323 AAATACCCCTAGCTTGT
66 AAATACCCCTAGCTTGT
* * * * *
8833340 AAAATTACCAAAATACCCCTGATTTGTGAAATTATCAAAATAC
1 AAAATTACTAAAATAACCCTGGTTTGTAAAATTACCAAAATAC
8833383 TCTCGATTTG
Statistics
Matches: 107, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
81 97 0.91
82 10 0.09
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (82 bp):
AAAATTACTAAAATAACCCTGGTTTGTAAAATTACCAAAATACCCCTAGATCAGTAAAATTACCA
AAATACCCCTAGCTTGT
Found at i:8833394 original size:81 final size:80
Alignment explanation
Indices: 8833178--8833413 Score: 249
Period size: 81 Copynumber: 2.9 Consensus size: 80
8833168 CTCGATTTAC
* * ** **
8833178 AAAATTACTAAAAT-ACCCTTAGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCA
1 AAAATTACCAAAATAACCCTGA-TTTGTAAAATTACCAAAATA-CCTCGATTTGTAAAATTACCA
* *
8833242 AAATACCCCTGGTTTGT
64 AAATACCCCTAGCTTGT
** * * * *
8833259 AAAATTATTAAAATAACCCTGGTTTGTAAAATTACCAAAATACCCCTAGCTTGTAAAATTACCAA
1 AAAATTACCAAAATAACCCTGATTTGTAAAATTACCAAAATACCTCGA-TTTGTAAAATTACCAA
8833324 AATACCCCTAGCTTGT
65 AATACCCCTAGCTTGT
* * * * * *
8833340 AAAATTACCAAAATACCCCTGATTTGTGAAATTATCAAAATACTCTCGATTTGTAGAATTATCGA
1 AAAATTACCAAAATAACCCTGATTTGTAAAATTACCAAAATAC-CTCGATTTGTAAAATTACCAA
8833405 AATACCCCT
65 AATACCCCT
8833414 GTAGGGTAGA
Statistics
Matches: 128, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
80 4 0.03
81 116 0.91
82 8 0.06
ACGTcount: A:0.41, C:0.21, G:0.08, T:0.30
Consensus pattern (80 bp):
AAAATTACCAAAATAACCCTGATTTGTAAAATTACCAAAATACCTCGATTTGTAAAATTACCAAA
ATACCCCTAGCTTGT
Found at i:8833414 original size:54 final size:54
Alignment explanation
Indices: 8833164--8833414 Score: 249
Period size: 54 Copynumber: 4.6 Consensus size: 54
8833154 ATTATCGTTT
** * * **
8833164 TACCCTCGATTTACAAAATTACTAAAATA-CCCTTAGTTTACAAAATTACCAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAA
** * **
8833218 TACCCTCGATCAGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATTAAAA
1 TACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAA
* *
8833272 TAACCCT-GGTTTGTAAAATTACCAAAATACCCCT-AGCTTGTAAAATTACCAAAA
1 T-ACCCTCGATTTGTAAAATTACCAAAATACCCCTGA-TTTGTAAAATTACCAAAA
* * * *
8833326 TACCC-CTAGCTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTATCAAAA
1 TACCCTCGA-TTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAA
* * * *
8833380 TACTCTCGATTTGTAGAATTATCGAAATACCCCTG
1 TACCCTCGATTTGTAAAATTACCAAAATACCCCTG
8833415 TAGGGTAGAA
Statistics
Matches: 160, Mismatches: 30, Indels: 14
0.78 0.15 0.07
Matches are distributed among these distances:
53 4 0.03
54 144 0.90
55 12 0.08
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (54 bp):
TACCCTCGATTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACCAAAA
Found at i:8833422 original size:27 final size:27
Alignment explanation
Indices: 8833392--8833573 Score: 238
Period size: 27 Copynumber: 6.7 Consensus size: 27
8833382 CTCTCGATTT
*
8833392 GTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
8833419 GTAGAATTACCGAAATACCCCTATAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
8833446 GTAGAATTACTGAAATAACCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
8833473 GTAGAATTACCGAAATACCCTTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
8833500 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* **
8833527 GTAGAATTACTGAAATACCATTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
8833554 GTAGAATTACCGAGATACCC
1 GTAGAATTACCGAAATACCC
8833574 TAGTGGGGTA
Statistics
Matches: 134, Mismatches: 21, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 134 1.00
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:8833832 original size:25 final size:25
Alignment explanation
Indices: 8833794--8833863 Score: 122
Period size: 25 Copynumber: 2.8 Consensus size: 25
8833784 AGGAAGTGCT
* *
8833794 AAAAGGGCTATGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTATCA
8833819 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTATCA
8833844 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
8833864 ATTAAAAGAG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATCA
Found at i:8833876 original size:24 final size:24
Alignment explanation
Indices: 8833793--8833876 Score: 107
Period size: 25 Copynumber: 3.4 Consensus size: 24
8833783 GAGGAAGTGC
*
8833793 TAAAAGGGCTATGCCCCAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
8833817 CGAAAAGGGCTTTGCCCCAGTTTAT
1 -TAAAAGGGCTTTGCCCCAGTTTAT
*
8833842 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTTTGCCCCAGTTTAT
8833866 TAAAAGAGGCT
1 TAAAAG-GGCT
8833877 AGGCCTCTAG
Statistics
Matches: 54, Mismatches: 4, Indels: 3
0.89 0.07 0.05
Matches are distributed among these distances:
23 5 0.09
24 8 0.15
25 41 0.76
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:8834121 original size:30 final size:31
Alignment explanation
Indices: 8834083--8834148 Score: 118
Period size: 31 Copynumber: 2.2 Consensus size: 31
8834073 CGCTTACAGT
8834083 AAAA-GCTTCGGCC-AGTGATATGATTTATG
1 AAAAGGCTTCGGCCTAGTGATATGATTTATG
8834112 AAAAGGCTTCGGCCTAGTGATATGATTTATG
1 AAAAGGCTTCGGCCTAGTGATATGATTTATG
8834143 AAAAGG
1 AAAAGG
8834149 TTTCTGCCCA
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
29 4 0.11
30 9 0.26
31 22 0.63
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (31 bp):
AAAAGGCTTCGGCCTAGTGATATGATTTATG
Found at i:8837217 original size:24 final size:24
Alignment explanation
Indices: 8837190--8837235 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
8837180 GACACAAAAC
* *
8837190 AAAAATTTTAAGAACAATTAATCG
1 AAAAATTATAAAAACAATTAATCG
*
8837214 AAAAATTATAAAAATAATTAAT
1 AAAAATTATAAAAACAATTAAT
8837236 TAAAACATCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.30
Consensus pattern (24 bp):
AAAAATTATAAAAACAATTAATCG
Found at i:8839428 original size:20 final size:21
Alignment explanation
Indices: 8839385--8839430 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
8839375 ACTATTTTGT
8839385 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
8839405 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
8839424 TATGGGC
1 TATGGGC
8839431 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:8839593 original size:62 final size:61
Alignment explanation
Indices: 8839454--8839595 Score: 155
Period size: 61 Copynumber: 2.3 Consensus size: 61
8839444 TCTCGACTTG
* * ** * *
8839454 TAATAGGGC-TACGGCCCAGACTGATACTGATATGGGCTAGGCCCAGTATGCTTTGATATTG
1 TAATAGGGCTTA-GGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGAAATTC
* *
8839515 TAATAGGGCTTTGGCCCAGATTAATACTGATATGGGCTAAGGCCCAGT-TAACACT-AAATTC
1 TAATAGGGCTTAGGCCCAGACTAATACTGATATGGGCT-AGGCCCAGTAT-ACACTGAAATTC
8839576 TGAATAGGGCTTAGGCCCAG
1 T-AATAGGGCTTAGGCCCAG
8839596 TAAAGCTTGA
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
61 39 0.57
62 29 0.43
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (61 bp):
TAATAGGGCTTAGGCCCAGACTAATACTGATATGGGCTAGGCCCAGTATACACTGAAATTC
Found at i:8848648 original size:27 final size:27
Alignment explanation
Indices: 8848618--8848691 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
8848608 ACATAGGGGT
* * *
8848618 AAAACAGTCATCTTAGCATATAAGGGC
1 AAAACAGTCATTTTACCATACAAGGGC
* * *
8848645 AAAATAGTCATTTTACCACACAGGGGC
1 AAAACAGTCATTTTACCATACAAGGGC
*
8848672 AATACAGTCATTTTACCATA
1 AAAACAGTCATTTTACCATA
8848692 AAGCGGGTCT
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (27 bp):
AAAACAGTCATTTTACCATACAAGGGC
Found at i:8849686 original size:24 final size:24
Alignment explanation
Indices: 8849654--8849702 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
8849644 TATTAAAGTG
8849654 TAAGAAGAGGGAGATGTCGATACC
1 TAAGAAGAGGGAGATGTCGATACC
8849678 TAAGAAGAGGGAGATGTCGATACC
1 TAAGAAGAGGGAGATGTCGATACC
8849702 T
1 T
8849703 GAAAGAGTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.33, T:0.18
Consensus pattern (24 bp):
TAAGAAGAGGGAGATGTCGATACC
Found at i:8849715 original size:24 final size:24
Alignment explanation
Indices: 8849654--8849715 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
8849644 TATTAAAGTG
*
8849654 TAAGAAGAGGGAGATGTCGATACC
1 TAAGAAGAGAGAGATGTCGATACC
*
8849678 TAAGAAGAGGGAGATGTCGATACC
1 TAAGAAGAGAGAGATGTCGATACC
*
8849702 TGA-AAGAGTAGAGA
1 TAAGAAGAG-AGAGA
8849716 AGAGAAGGGG
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
23 5 0.14
24 30 0.86
ACGTcount: A:0.40, C:0.10, G:0.34, T:0.16
Consensus pattern (24 bp):
TAAGAAGAGAGAGATGTCGATACC
Found at i:8854384 original size:14 final size:15
Alignment explanation
Indices: 8854365--8854398 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
8854355 TTTATTTGCT
8854365 TATGACTTACTAAG-
1 TATGACTTACTAAGC
*
8854379 TATGACTTGCTAAGC
1 TATGACTTACTAAGC
8854394 TATGA
1 TATGA
8854399 TAGCTTACTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.32, C:0.15, G:0.18, T:0.35
Consensus pattern (15 bp):
TATGACTTACTAAGC
Found at i:8863082 original size:34 final size:34
Alignment explanation
Indices: 8863034--8863131 Score: 126
Period size: 34 Copynumber: 2.9 Consensus size: 34
8863024 TCTAATTTGT
*
8863034 TATGACATTTTGATATGATATATGTTTATGGAAA
1 TATGACATTATGATATGATATATGTTTATGGAAA
* *
8863068 TATGACATTATGATATGATATATGTTTCTGGTAA
1 TATGACATTATGATATGATATATGTTTATGGAAA
* * *
8863102 TATGACA-TACTGATTTGATATTTGTATATG
1 TATGACATTA-TGATATGATATATGTTTATG
8863132 TCTACATCAT
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
33 2 0.04
34 54 0.96
ACGTcount: A:0.33, C:0.05, G:0.17, T:0.45
Consensus pattern (34 bp):
TATGACATTATGATATGATATATGTTTATGGAAA
Found at i:8865290 original size:21 final size:21
Alignment explanation
Indices: 8865266--8865309 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
8865256 TTGCTTATTC
*
8865266 TAGTTCTAGGGAATAGAAAGG
1 TAGTTCTAGGGAATAAAAAGG
*
8865287 TAGTTTTAGGGAATAAAAAGG
1 TAGTTCTAGGGAATAAAAAGG
8865308 TA
1 TA
8865310 ATGTGGTAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.02, G:0.30, T:0.27
Consensus pattern (21 bp):
TAGTTCTAGGGAATAAAAAGG
Found at i:8866998 original size:10 final size:11
Alignment explanation
Indices: 8866980--8867019 Score: 57
Period size: 10 Copynumber: 3.7 Consensus size: 11
8866970 GAGCATATAA
8866980 TATATCATATC
1 TATATCATATC
8866991 TA-ATCATATC
1 TATATCATATC
8867001 -ATATCATATC
1 TATATCATATC
8867011 TCATATCAT
1 T-ATATCAT
8867020 TTCATATTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
9 1 0.04
10 16 0.62
11 2 0.08
12 7 0.27
ACGTcount: A:0.38, C:0.20, G:0.00, T:0.42
Consensus pattern (11 bp):
TATATCATATC
Found at i:8867014 original size:17 final size:17
Alignment explanation
Indices: 8866981--8867026 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
8866971 AGCATATAAT
8866981 ATATCATATC-TA-ATC
1 ATATCATATCATATATC
*
8866996 ATATCATATCATATCTC
1 ATATCATATCATATATC
*
8867013 ATATCATTTCATAT
1 ATATCATATCATAT
8867027 TGTTGCCCCC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
15 10 0.37
16 2 0.07
17 15 0.56
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (17 bp):
ATATCATATCATATATC
Found at i:8867279 original size:4 final size:4
Alignment explanation
Indices: 8867272--8867447 Score: 352
Period size: 4 Copynumber: 44.0 Consensus size: 4
8867262 TGATATCATT
8867272 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
8867320 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
8867368 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
8867416 CATA CATA CATA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA
8867448 TATCACAAGT
Statistics
Matches: 172, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 172 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:8874521 original size:36 final size:36
Alignment explanation
Indices: 8874440--8874521 Score: 83
Period size: 36 Copynumber: 2.2 Consensus size: 36
8874430 TATTTTCCCT
* *
8874440 TTTTCTTTCTTTTTCTTCTTTTCTTTCCCCTGTTTCG
1 TTTTCTTT-TTGTTCTTCTTTCCTTTCCCCTGTTTCG
** * ***
8874477 AATGCTTTTTGTTCTTCTTTCCTTTCTTTTGTTTCG
1 TTTTCTTTTTGTTCTTCTTTCCTTTCCCCTGTTTCG
8874513 TTTTCTTTT
1 TTTTCTTTT
8874522 ATTTAGTTTA
Statistics
Matches: 34, Mismatches: 11, Indels: 1
0.74 0.24 0.02
Matches are distributed among these distances:
36 29 0.85
37 5 0.15
ACGTcount: A:0.02, C:0.22, G:0.07, T:0.68
Consensus pattern (36 bp):
TTTTCTTTTTGTTCTTCTTTCCTTTCCCCTGTTTCG
Found at i:8888351 original size:56 final size:56
Alignment explanation
Indices: 8888260--8888480 Score: 334
Period size: 56 Copynumber: 3.9 Consensus size: 56
8888250 TCTTACATGT
* * * * * *
8888260 AATCACATATCGATGCCAACGTACTAGACGCGGTCTAACTTGTACACATATATTGG
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATTGG
* *
8888316 AATCACATATCGATTCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGG
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATTGG
* * *
8888372 AATCACATATTGATGCCAACGTATTAAACATGGTCTTACTCGCACATATATATTGG
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATTGG
*
8888428 AATCACATATCGTTGCCAACGTATTAAACGTGGTCTTACTCGCACACATATAT
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATAT
8888481 CGATGCCATG
Statistics
Matches: 148, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 148 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (56 bp):
AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATTGG
Found at i:8892463 original size:49 final size:49
Alignment explanation
Indices: 8892402--8892500 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
8892392 TTCCAAAAAC
8892402 ATAATCTCTTGATCTCATTATGAAAAGGAATGTAAATCGAAAGGGTAAT
1 ATAATCTCTTGATCTCATTATGAAAAGGAATGTAAATCGAAAGGGTAAT
*
8892451 ATAATCTTTTGATCTCATTATGAAAAGGAATGTAAATCGAAAGGGTAAT
1 ATAATCTCTTGATCTCATTATGAAAAGGAATGTAAATCGAAAGGGTAAT
8892500 A
1 A
8892501 CTTGAAAAGG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.41, C:0.09, G:0.18, T:0.31
Consensus pattern (49 bp):
ATAATCTCTTGATCTCATTATGAAAAGGAATGTAAATCGAAAGGGTAAT
Found at i:8892641 original size:33 final size:33
Alignment explanation
Indices: 8892552--8892643 Score: 100
Period size: 33 Copynumber: 2.8 Consensus size: 33
8892542 GGTTATGTAC
* * *
8892552 ACTTTGTGTGTA-TACTTGGAAA-TATTAGGTAT
1 ACTTTGTGTGTACCACTTGGAAAGGA-AAGGTAT
* *
8892584 ACTTTGTGTATACCA-TATGAAAAGGAAAGGTAT
1 ACTTTGTGTGTACCACT-TGGAAAGGAAAGGTAT
8892617 ACTTTGTGTGTACCACTTGGAAAGGAA
1 ACTTTGTGTGTACCACTTGGAAAGGAA
8892644 TGTACACCTC
Statistics
Matches: 49, Mismatches: 7, Indels: 7
0.78 0.11 0.11
Matches are distributed among these distances:
32 12 0.24
33 35 0.71
34 2 0.04
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.35
Consensus pattern (33 bp):
ACTTTGTGTGTACCACTTGGAAAGGAAAGGTAT
Found at i:8894271 original size:96 final size:96
Alignment explanation
Indices: 8894105--8894287 Score: 249
Period size: 96 Copynumber: 1.9 Consensus size: 96
8894095 ATGATGCCGT
* ** * * *
8894105 TCACACAAGCTGACGAGTATCCGCAACAAATGTTGGAACTCAGTCATCGGTAGGACATTCAGGAC
1 TCACACAAGCTGACGAGCATCCGCAACAAATGCCGGAACTCAGCCATCAGTAAGACATTCAGGAC
* ** *
8894170 TAGCACCCTGAACATGGTAACCTAGGTCTGC
66 GAGCACCCAAAACAAGGTAACCTAGGTCTGC
* * *
8894201 TCACACAAGCTGATGAGCATCTGCAACAAATGCCGGAACTCAGCCATCAGTAAGACATTCAGTAC
1 TCACACAAGCTGACGAGCATCCGCAACAAATGCCGGAACTCAGCCATCAGTAAGACATTCAGGAC
8894266 GAGCACCCAAAACAAGGTAACC
66 GAGCACCCAAAACAAGGTAACC
8894288 CTAATGACAT
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
96 74 1.00
ACGTcount: A:0.34, C:0.27, G:0.21, T:0.18
Consensus pattern (96 bp):
TCACACAAGCTGACGAGCATCCGCAACAAATGCCGGAACTCAGCCATCAGTAAGACATTCAGGAC
GAGCACCCAAAACAAGGTAACCTAGGTCTGC
Found at i:8896125 original size:104 final size:104
Alignment explanation
Indices: 8895945--8896152 Score: 407
Period size: 104 Copynumber: 2.0 Consensus size: 104
8895935 TATCACCCTT
8895945 ATGACAATGTTTAGGTTGTGTTTAAATTATGAAATCAAATAAGGTGGTTAGTGGAGAGATTTAGT
1 ATGACAATGTTTAGGTTGTGTTTAAATTATGAAATCAAATAAGGTGGTTAGTGGAGAGATTTAGT
8896010 GGGAGTGTGGGTGGTTAATATTTGTTTAAAATAAAATAA
66 GGGAGTGTGGGTGGTTAATATTTGTTTAAAATAAAATAA
*
8896049 ATGACAGTGTTTAGGTTGTGTTTAAATTATGAAATCAAATAAGGTGGTTAGTGGAGAGATTTAGT
1 ATGACAATGTTTAGGTTGTGTTTAAATTATGAAATCAAATAAGGTGGTTAGTGGAGAGATTTAGT
8896114 GGGAGTGTGGGTGGTTAATATTTGTTTAAAATAAAATAA
66 GGGAGTGTGGGTGGTTAATATTTGTTTAAAATAAAATAA
8896153 TTAGTTTTCA
Statistics
Matches: 103, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
104 103 1.00
ACGTcount: A:0.34, C:0.02, G:0.27, T:0.37
Consensus pattern (104 bp):
ATGACAATGTTTAGGTTGTGTTTAAATTATGAAATCAAATAAGGTGGTTAGTGGAGAGATTTAGT
GGGAGTGTGGGTGGTTAATATTTGTTTAAAATAAAATAA
Found at i:8896822 original size:3 final size:3
Alignment explanation
Indices: 8896814--8896859 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
8896804 CATGGTTAAG
8896814 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT C
8896860 ATATCATGTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
CTT
Found at i:8900039 original size:38 final size:38
Alignment explanation
Indices: 8899995--8900067 Score: 119
Period size: 38 Copynumber: 1.9 Consensus size: 38
8899985 ATAAATATAT
* *
8899995 AATCATAAGATAGGGAGAGAAGTGAAACTTTCTAAATG
1 AATCATAAAATAGGGAGAGAAGTGAAACTTCCTAAATG
*
8900033 AATCATAAAATAGGGAGAGAGGTGAAACTTCCTAA
1 AATCATAAAATAGGGAGAGAAGTGAAACTTCCTAA
8900068 TTGATGAATG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.45, C:0.10, G:0.23, T:0.22
Consensus pattern (38 bp):
AATCATAAAATAGGGAGAGAAGTGAAACTTCCTAAATG
Found at i:8912679 original size:40 final size:40
Alignment explanation
Indices: 8912628--8912721 Score: 170
Period size: 40 Copynumber: 2.4 Consensus size: 40
8912618 AGGCCTACTG
8912628 ACACAAGCTGTCAATAAGACGTAGCTACACGGTGCTACAC
1 ACACAAGCTGTCAATAAGACGTAGCTACACGGTGCTACAC
* *
8912668 ACACAAGCTGTCAGTAAGACGTAGCTACACGGTGCTACGC
1 ACACAAGCTGTCAATAAGACGTAGCTACACGGTGCTACAC
8912708 ACACAAGCTGTCAA
1 ACACAAGCTGTCAA
8912722 GTATCCGCAA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.34, C:0.28, G:0.21, T:0.17
Consensus pattern (40 bp):
ACACAAGCTGTCAATAAGACGTAGCTACACGGTGCTACAC
Found at i:8917759 original size:3 final size:3
Alignment explanation
Indices: 8917747--8917814 Score: 111
Period size: 3 Copynumber: 23.0 Consensus size: 3
8917737 CATGGTTTAG
* *
8917747 CTT C-T CTT CTT CTT TTT CTT TTT CTT CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
8917794 CTT CTT CTT CTT CTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT
8917815 TTTTATTTTA
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
2 2 0.03
3 58 0.97
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
CTT
Found at i:8924861 original size:40 final size:41
Alignment explanation
Indices: 8924796--8924901 Score: 119
Period size: 40 Copynumber: 2.7 Consensus size: 41
8924786 TGAGGAATTG
* * * *
8924796 TATCCGGGCTTAAACACCTGTAGGCTAT-ATGCTGGAATGT
1 TATCCGGGCTTAAAGACCTGCAGGCTATCATGCTAGAATGC
* *
8924836 TATCCGGGCTTAAAGACCCGCAGGCT-TCGTGCTAGAATGC
1 TATCCGGGCTTAAAGACCTGCAGGCTATCATGCTAGAATGC
* *
8924876 TATCTGGGC-TAGAGACCTGCAGGCTA
1 TATCCGGGCTTAAAGACCTGCAGGCTA
8924902 CGAGCTGGTA
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
39 15 0.27
40 40 0.73
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (41 bp):
TATCCGGGCTTAAAGACCTGCAGGCTATCATGCTAGAATGC
Found at i:8927870 original size:7 final size:7
Alignment explanation
Indices: 8927858--8927885 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
8927848 AAAGCAACAC
8927858 AAAAATA
1 AAAAATA
8927865 AAAAATA
1 AAAAATA
8927872 AAAAATA
1 AAAAATA
8927879 AAAAATA
1 AAAAATA
8927886 CAAATAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (7 bp):
AAAAATA
Done.