Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 38 of 295
Found at i:10717628 original size:133 final size:133
Alignment explanation
Indices: 10717367--10717629 Score: 395
Period size: 133 Copynumber: 2.0 Consensus size: 133
10717357 AAGATGGCGA
*
10717367 ATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTAGC
1 ATCTTATCTCCATGTACCGGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTAGC
* ** * *
10717432 AAGGGAGCAGGTTGGCGATTGTAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAGATTG
66 AAGAGAGCAGGTTGAAGATTGTAGTCTTATCCTCTTGAGGCAGCAAGGAAGCAGACTGAAGATTG
10717497 AAT
131 AAT
* ** *
10717500 ATCTTATCTCCATGTACCGGTAATGGAGCAGATTTTAGCCA-TTGACCTTATCTCTCTGAGGTAG
1 ATCTTATCTCCATGTACCGGCAATGGAGCAGATTTTAGCCACCAG-CCTTATCTCTCTGAAGTAG
*
10717564 CAAGAGAGCAGGTTGAAGA-TGATAGTCTTATCCTCTTGAGGCAGCAATGAAGCAGACTGAAGAT
65 CAAGAGAGCAGGTTGAAGATTG-TAGTCTTATCCTCTTGAGGCAGCAAGGAAGCAGACTGAAGAT
10717628 TG
129 TG
10717630 CAGGTCTTAT
Statistics
Matches: 117, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
132 3 0.03
133 114 0.97
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (133 bp):
ATCTTATCTCCATGTACCGGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTAGC
AAGAGAGCAGGTTGAAGATTGTAGTCTTATCCTCTTGAGGCAGCAAGGAAGCAGACTGAAGATTG
AAT
Found at i:10717908 original size:44 final size:44
Alignment explanation
Indices: 10717860--10718092 Score: 157
Period size: 44 Copynumber: 5.2 Consensus size: 44
10717850 AGCCCCAAGC
* * *
10717860 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAATATTGAAGT
1 CTTATCTCTCTGAGGTAGCAAGAGAGCAGATTAAAGATTGAAGT
* * * * *
10717904 CTTATCGTC-CTGAGGTAGCAAG-GAAGCAGACTGAATATTGGAGG
1 CTTATC-TCTCTGAGGTAGCAAGAG-AGCAGATTAAAGATTGAAGT
** * * * * * ** *
10717948 CAAATCTTATCTCCATGTATCGACAATAGAGCAGATTTAAGCCTGAAGC
1 CTTATC-TCTCT-GAGGTA--G-CAAGAGAGCAGATTAAAGATTGAAGT
*
10717997 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTAAAGATTG-AGT
1 CTTATCTCTCTGAGGTAGCAAGAGAGCAGATTAAAGATTGAAGT
* * * * *
10718040 CTTATCTTTCTGAAGTAGTAAGAAAGCAGACTAAAGATTGAAGAT
1 CTTATCTCTCTGAGGTAGCAAGAGAGCAGATTAAAGATTGAAG-T
10718085 CTTATCTC
1 CTTATCTC
10718093 CCCTAAGCAG
Statistics
Matches: 143, Mismatches: 36, Indels: 19
0.72 0.18 0.10
Matches are distributed among these distances:
43 37 0.26
44 59 0.41
45 13 0.09
46 4 0.03
47 4 0.03
48 5 0.03
49 20 0.14
50 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.28
Consensus pattern (44 bp):
CTTATCTCTCTGAGGTAGCAAGAGAGCAGATTAAAGATTGAAGT
Found at i:10717932 original size:137 final size:135
Alignment explanation
Indices: 10717674--10718079 Score: 469
Period size: 137 Copynumber: 3.0 Consensus size: 135
10717664 CCAAAGACGA
* * * * *
10717674 CAAATCTTATCTCCATGTACCGGCAATAGAGTAGATTTAAGTCCC-AGCCTTATCTCTCTGAAGT
1 CAAATCTTATCTCCATGTATCGACAATAGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGT
* * * * * ** * * *
10717738 TGC-AGTGGGGTAGGCTCG-ATATACAAGTCTCTATCTCCCTGAGGTTGTAGTGGAGCAGACTGA
66 AGCAAG-AGAGCAGG-TTGAATATTGAAGTCT-TATCT-CCTGAGGTAGAAG-GAAGCAGACTGA
10717801 AGATTGGAGG
126 AGATTGGAGG
* *
10717811 CAAATCTTATCTTCATGTATCGACAATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGT
1 CAAATCTTATCTCCATGTATCGACAATAGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGT
*
10717876 AGCAAGAGAGCAGGTTGAATATTGAAGTCTTATCGTCCTGAGGTAGCAAGGAAGCAGACTGAATA
66 AGCAAGAGAGCAGGTTGAATATTGAAGTCTTATC-TCCTGAGGTAG-AAGGAAGCAGACTGAAGA
10717941 TTGGAGG
129 TTGGAGG
**
10717948 CAAATCTTATCTCCATGTATCGACAATAGAGCAGATTTAAGCCTGAAGCCTTATCTCTCTGAGGT
1 CAAATCTTATCTCCATGTATCGACAATAGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGT
* * * * * *
10718013 AGCAAGAGAGCAGGTTAAAGATTG-AGTCTTATCTTTCTGAAGTAGTAAGAAAGCAGACTAAAGA
66 AGCAAGAGAGCAGGTTGAATATTGAAGTCTTATC-TCCTGAGGTAG-AAGGAAGCAGACTGAAGA
10718077 TTG
129 TTG
10718080 AAGATCTTAT
Statistics
Matches: 233, Mismatches: 31, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
136 36 0.15
137 157 0.67
138 38 0.16
139 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (135 bp):
CAAATCTTATCTCCATGTATCGACAATAGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGT
AGCAAGAGAGCAGGTTGAATATTGAAGTCTTATCTCCTGAGGTAGAAGGAAGCAGACTGAAGATT
GGAGG
Found at i:10718140 original size:177 final size:177
Alignment explanation
Indices: 10717947--10718342 Score: 467
Period size: 177 Copynumber: 2.2 Consensus size: 177
10717937 AATATTGGAG
* * ** *
10717947 GCAAATCTTATCTCCATGTATCGACAATAGAGCAGATTTAAGCCTGAAGCCTTATCTCTCTGAGG
1 GCAAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACAAGCCTTATCTCTCTGAAG
* **
10718012 TAGCAAGAGAGCAGGTTAAAGA-TTGAGTCTTATCTTTCTGAAGTAGTAAGAAAGCAGACTAAAG
66 TAGCAAGAGAGCAGGTTAAAGATTTGAGTCTTATCTTCCTGAAGTACCAAGAAAGCAGACTAAAG
* * * *
10718076 ATTGAAGATCTTATCTCCCCT-AAGCAGTAGTGGAGCAGATCGA-AGATG
131 ACTAAAGATC-TAT-TCCCCTAAAGCAGTAGCGGAGCAGATCGAGA-ATA
* * *
10718124 GCGAATCTTATCTCCATGTA-CTGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAA
1 GCAAATCTTATCTCCATGTATC-GGCAATGGAGCAGATTTAAGCCACAAGCCTTATCTCTCTGAA
*** * * * * *
10718188 GTAGCAAGAGAGCAGGTTGGCGATTTTAGTCTTATCTTCCTGAGGTACCAAGGAAGTAGACTGAA
65 GTAGCAAGAGAGCAGGTTAAAGATTTGAGTCTTATCTTCCTGAAGTACCAAGAAAGCAGACTAAA
* * *
10718253 GACTAAAGATCTATTTCCCTAAAGCAGTTGCGGAGCAGATTGAGAATA
130 GACTAAAGATCTATTCCCCTAAAGCAGTAGCGGAGCAGATCGAGAATA
* * *
10718301 GTAAATCTTATCTCCATGTATTGGCAATGGAACAGATTTAAG
1 GCAAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAG
10718343 TCAATAGTCC
Statistics
Matches: 183, Mismatches: 31, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
176 6 0.03
177 134 0.73
178 43 0.23
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (177 bp):
GCAAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACAAGCCTTATCTCTCTGAAG
TAGCAAGAGAGCAGGTTAAAGATTTGAGTCTTATCTTCCTGAAGTACCAAGAAAGCAGACTAAAG
ACTAAAGATCTATTCCCCTAAAGCAGTAGCGGAGCAGATCGAGAATA
Found at i:10720866 original size:26 final size:24
Alignment explanation
Indices: 10720824--10720874 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 24
10720814 AGTGTACGAG
10720824 TTTTTGAAAGTCAAAAGTCGATCGTA
1 TTTTTGAAAGTCAAAAG--GATCGTA
*
10720850 TTTTTGAAGGT-ATAAAGGATCGTA
1 TTTTTGAAAGTCA-AAAGGATCGTA
10720874 T
1 T
10720875 CCAATCATGC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
24 8 0.35
25 1 0.04
26 14 0.61
ACGTcount: A:0.33, C:0.08, G:0.22, T:0.37
Consensus pattern (24 bp):
TTTTTGAAAGTCAAAAGGATCGTA
Found at i:10723160 original size:14 final size:14
Alignment explanation
Indices: 10723141--10723170 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
10723131 TTATATCGAG
10723141 ACCAATCCAAATCA
1 ACCAATCCAAATCA
*
10723155 ACCAATCCAATTCA
1 ACCAATCCAAATCA
10723169 AC
1 AC
10723171 ATATTTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
ACCAATCCAAATCA
Found at i:10728301 original size:16 final size:16
Alignment explanation
Indices: 10728280--10728322 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 16
10728270 ATAAAAATAA
10728280 AAAAAGAGAAAGAAAT
1 AAAAAGAGAAAGAAAT
10728296 AAAAAGAG--A-AAAT
1 AAAAAGAGAAAGAAAT
10728309 AAAAA-AGAAAGAAA
1 AAAAAGAGAAAGAAA
10728323 GAAAGAATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
12 2 0.08
13 9 0.38
14 2 0.08
15 3 0.12
16 8 0.33
ACGTcount: A:0.79, C:0.00, G:0.16, T:0.05
Consensus pattern (16 bp):
AAAAAGAGAAAGAAAT
Found at i:10728315 original size:14 final size:14
Alignment explanation
Indices: 10728273--10728316 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 14
10728263 CTTAAAAATA
10728273 AAAATAAAAAAAGAG
1 AAAAT-AAAAAAGAG
*
10728288 AAAGAAATAAAAAGAG
1 AAA-ATA-AAAAAGAG
10728304 AAAATAAAAAAGA
1 AAAATAAAAAAGA
10728317 AAGAAAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
14 7 0.28
15 6 0.24
16 12 0.48
ACGTcount: A:0.80, C:0.00, G:0.14, T:0.07
Consensus pattern (14 bp):
AAAATAAAAAAGAG
Found at i:10728322 original size:32 final size:30
Alignment explanation
Indices: 10728265--10728326 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 30
10728255 CTTGAGAACT
* *
10728265 TAAAAATAAAAATAAAAAAAGAGAAAGAAA
1 TAAAAAGAAAAATAAAAAAAAAGAAAGAAA
10728295 TAAAAAGAGAAAATAAAAAAGAAAGAAAGAAA
1 TAAAAAGA-AAAATAAAAAA-AAAGAAAGAAA
10728327 GAATCAATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 7 0.25
31 11 0.39
32 10 0.36
ACGTcount: A:0.79, C:0.00, G:0.13, T:0.08
Consensus pattern (30 bp):
TAAAAAGAAAAATAAAAAAAAAGAAAGAAA
Found at i:10729420 original size:18 final size:17
Alignment explanation
Indices: 10729385--10729416 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
10729375 AAGCATTTAA
10729385 AAAAAAAGAGATCATTC
1 AAAAAAAGAGATCATTC
10729402 AAAAAAA-AGATCATT
1 AAAAAAAGAGATCATT
10729417 TTCATTCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.62, C:0.09, G:0.09, T:0.19
Consensus pattern (17 bp):
AAAAAAAGAGATCATTC
Found at i:10729523 original size:64 final size:64
Alignment explanation
Indices: 10729442--10729649 Score: 353
Period size: 64 Copynumber: 3.2 Consensus size: 64
10729432 TTCATAACAC
*
10729442 GTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACACCAGCATCACATCTA
1 GTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATCAGCATCACATCTA
* * * *
10729506 ATTAGGAGTATTTGATTCATTTTGATCATAGCATCCTAATTATTTGACATAAGCATCACATCTA
1 GTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATCAGCATCACATCTA
*
10729570 GTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTAACATCAGCATCACATCTA
1 GTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATCAGCATCACATCTA
*
10729634 GTTAGGAGTATTTGAT
1 GTTAGGAGCATTTGAT
10729650 CGTAGCATCC
Statistics
Matches: 133, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 133 1.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (64 bp):
GTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATCAGCATCACATCTA
Found at i:10730051 original size:44 final size:44
Alignment explanation
Indices: 10729968--10730194 Score: 123
Period size: 44 Copynumber: 5.1 Consensus size: 44
10729958 AGCCACCAGC
* * * **
10729968 CTTATCTT-TCTGAAGTAGCAAGGGAGCAGGTTGGCGATTGTAGT
1 CTTATCTTCT-TGAGGTAGCAAGGAAGCAGATTGAAGATTGTAGT
*
10730012 CTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAGATTGAATA-T
1 CTTATCTTCTTGAGGTAGCAAGGAAGCAGATTGAAGATTG--TAGT
* * * ** *
10730057 CTTATCTCCATGTACCGGTA--ATGG-AGCAGATTTTAGCCATTG-A-C
1 CTTATCTTCTTG-A--GGTAGCAAGGAAGCAGATTGAAG--ATTGTAGT
*
10730101 CTTATC-TCTCTGAGGTAGCAA-GAGAGCAGGTTGAAGA-TGATAGT
1 CTTATCTTCT-TGAGGTAGCAAGGA-AGCAGATTGAAGATTG-TAGT
* * * *
10730145 CTTATCCTCTTGAGGCAGCAAGGAAGCAGACTGAAGATTGCAGGT
1 CTTATCTTCTTGAGGTAGCAAGGAAGCAGATTGAAGATTGTA-GT
10730190 CTTAT
1 CTTAT
10730195 TTCCCTAAGC
Statistics
Matches: 139, Mismatches: 24, Indels: 39
0.69 0.12 0.19
Matches are distributed among these distances:
41 6 0.04
42 2 0.01
43 4 0.03
44 78 0.56
45 35 0.25
46 6 0.04
47 4 0.03
48 4 0.03
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (44 bp):
CTTATCTTCTTGAGGTAGCAAGGAAGCAGATTGAAGATTGTAGT
Found at i:10730183 original size:133 final size:133
Alignment explanation
Indices: 10729922--10730184 Score: 395
Period size: 133 Copynumber: 2.0 Consensus size: 133
10729912 AAGATGGCGA
* *
10729922 ATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTTTCTGAAGTAGC
1 ATCTTATCTCCATGTACCGGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTAGC
* ** * *
10729987 AAGGGAGCAGGTTGGCGATTGTAGTCTTATCTTCTTGAGGTAGCAAGGAAGCAGACTGAAGATTG
66 AAGAGAGCAGGTTGAAGATTGTAGTCTTATCCTCTTGAGGCAGCAAGGAAGCAGACTGAAGATTG
10730052 AAT
131 AAT
* ** *
10730055 ATCTTATCTCCATGTACCGGTAATGGAGCAGATTTTAGCCA-TTGACCTTATCTCTCTGAGGTAG
1 ATCTTATCTCCATGTACCGGCAATGGAGCAGATTTTAGCCACCAG-CCTTATCTCTCTGAAGTAG
10730119 CAAGAGAGCAGGTTGAAGA-TGATAGTCTTATCCTCTTGAGGCAGCAAGGAAGCAGACTGAAGAT
65 CAAGAGAGCAGGTTGAAGATTG-TAGTCTTATCCTCTTGAGGCAGCAAGGAAGCAGACTGAAGAT
10730183 TG
129 TG
10730185 CAGGTCTTAT
Statistics
Matches: 117, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
132 3 0.03
133 114 0.97
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (133 bp):
ATCTTATCTCCATGTACCGGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTAGC
AAGAGAGCAGGTTGAAGATTGTAGTCTTATCCTCTTGAGGCAGCAAGGAAGCAGACTGAAGATTG
AAT
Found at i:10730464 original size:44 final size:44
Alignment explanation
Indices: 10730416--10730648 Score: 166
Period size: 44 Copynumber: 5.2 Consensus size: 44
10730406 AGCCCCAAGC
* *
10730416 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGATTGAAGT
1 CTTATCTCTCTGAGGTAGCAAGAGAGCAGATTAAAGATTGAAGT
* * * * *
10730460 CTTATCGTC-CTGAGGTAGCAAG-GAAGCAGACTGAATATTGGAGG
1 CTTATC-TCTCTGAGGTAGCAAGAG-AGCAGATTAAAGATTGAAGT
** * * * * * ** *
10730504 CAAATCTTATCTCCATGTATCGACAATAGAGCAGATTTAAGCCTGAAGC
1 CTTATC-TCTCT-GAGGTA--G-CAAGAGAGCAGATTAAAGATTGAAGT
*
10730553 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTAAAGATTG-AGT
1 CTTATCTCTCTGAGGTAGCAAGAGAGCAGATTAAAGATTGAAGT
* * * * *
10730596 CTTATCTTTCTGAAGTAGTAAGAAAGCAGACTAAAGATTGAAGAT
1 CTTATCTCTCTGAGGTAGCAAGAGAGCAGATTAAAGATTGAAG-T
10730641 CTTATCTC
1 CTTATCTC
10730649 CCCTAAGCAG
Statistics
Matches: 142, Mismatches: 37, Indels: 19
0.72 0.19 0.10
Matches are distributed among these distances:
43 37 0.26
44 58 0.41
45 13 0.09
46 4 0.03
47 4 0.03
48 5 0.04
49 20 0.14
50 1 0.01
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.27
Consensus pattern (44 bp):
CTTATCTCTCTGAGGTAGCAAGAGAGCAGATTAAAGATTGAAGT
Found at i:10730521 original size:137 final size:135
Alignment explanation
Indices: 10730229--10730635 Score: 471
Period size: 137 Copynumber: 3.0 Consensus size: 135
10730219 CCAAAGACGA
* * * *
10730229 CAAATCTTATCTCCATGTACCGGCAATAGAGTAGATTTAAGTCCCC-AGCCTTATCTCTCTGAAG
1 CAAATCTTATCTCCATGTATCGACAATAGAGCAGATTTAAG-CCCCAAGCCTTATCTCTCTGAGG
* * * * * * ** * * *
10730293 TTGC-AGTGGGGTAGGCTCG-ATATACAAGTCTCTATCTCCCTGAGGTTGTAGTGGAGCAGACTG
65 TAGCAAG-AGAGCAGG-TTGAAGATTGAAGTCT-TATCT-CCTGAGGTAGAAG-GAAGCAGACTG
10730356 AAGATTGGAGG
125 AAGATTGGAGG
* *
10730367 CAAATCTTATCTTCATGTATCGACAATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGT
1 CAAATCTTATCTCCATGTATCGACAATAGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGT
*
10730432 AGCAAGAGAGCAGGTTGAAGATTGAAGTCTTATCGTCCTGAGGTAGCAAGGAAGCAGACTGAATA
66 AGCAAGAGAGCAGGTTGAAGATTGAAGTCTTATC-TCCTGAGGTAG-AAGGAAGCAGACTGAAGA
10730497 TTGGAGG
129 TTGGAGG
**
10730504 CAAATCTTATCTCCATGTATCGACAATAGAGCAGATTTAAGCCTGAAGCCTTATCTCTCTGAGGT
1 CAAATCTTATCTCCATGTATCGACAATAGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGT
* * * * *
10730569 AGCAAGAGAGCAGGTTAAAGATTG-AGTCTTATCTTTCTGAAGTAGTAAGAAAGCAGACTAAAGA
66 AGCAAGAGAGCAGGTTGAAGATTGAAGTCTTATC-TCCTGAGGTAG-AAGGAAGCAGACTGAAGA
10730633 TTG
129 TTG
10730636 AAGATCTTAT
Statistics
Matches: 234, Mismatches: 30, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
136 36 0.15
137 123 0.53
138 73 0.31
139 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (135 bp):
CAAATCTTATCTCCATGTATCGACAATAGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGT
AGCAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTCCTGAGGTAGAAGGAAGCAGACTGAAGATT
GGAGG
Found at i:10730699 original size:177 final size:177
Alignment explanation
Indices: 10730503--10730898 Score: 476
Period size: 177 Copynumber: 2.2 Consensus size: 177
10730493 AATATTGGAG
* * ** *
10730503 GCAAATCTTATCTCCATGTATCGACAATAGAGCAGATTTAAGCCTGAAGCCTTATCTCTCTGAGG
1 GCAAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACAAGCCTTATCTCTCTGAAG
* **
10730568 TAGCAAGAGAGCAGGTTAAAGA-TTGAGTCTTATCTTTCTGAAGTAGTAAGAAAGCAGACTAAAG
66 TAGCAAGAGAGCAGGTTAAAGATTTGAGTCTTATCTTCCTGAAGTACCAAGAAAGCAGACTAAAG
* * * *
10730632 ATTGAAGATCTTATCTCCCCT-AAGCAGTAGTGGAGCAGATCGA-AGATG
131 ACTAAAGATC-TAT-TCCCCTAAAGCAGTAGCGGAGCAGATCGAGA-ATA
* * *
10730680 GCGAATCTTATCTCCATGTA-CTGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTCTGAA
1 GCAAATCTTATCTCCATGTATC-GGCAATGGAGCAGATTTAAGCCACAAGCCTTATCTCTCTGAA
*** * * * * *
10730744 GTAGCAAGAGAGCAGGTTGGCGATTTTAGTCTTATCTTCCTGAGGTACCAAGGAAGTAGACTGAA
65 GTAGCAAGAGAGCAGGTTAAAGATTTGAGTCTTATCTTCCTGAAGTACCAAGAAAGCAGACTAAA
* * *
10730809 GACTAAAGATCTATTTCCCTAAAGCAGTTGCGGAGCAGATTGAGAATA
130 GACTAAAGATCTATTCCCCTAAAGCAGTAGCGGAGCAGATCGAGAATA
* *
10730857 GCAAATCTTATCTCCATGTATTGGCAATGGAACAGATTTAAG
1 GCAAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAG
10730899 TCAATAGTCC
Statistics
Matches: 184, Mismatches: 30, Indels: 10
0.82 0.13 0.04
Matches are distributed among these distances:
176 6 0.03
177 135 0.73
178 43 0.23
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (177 bp):
GCAAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTAAGCCACAAGCCTTATCTCTCTGAAG
TAGCAAGAGAGCAGGTTAAAGATTTGAGTCTTATCTTCCTGAAGTACCAAGAAAGCAGACTAAAG
ACTAAAGATCTATTCCCCTAAAGCAGTAGCGGAGCAGATCGAGAATA
Found at i:10731475 original size:20 final size:22
Alignment explanation
Indices: 10731450--10731492 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
10731440 AGGTGATTCA
*
10731450 AGTTTTCAG-TTT-TTTTTTTT
1 AGTTTTCAGATTTCGTTTTTTT
10731470 AGTTTTCAGATTTCGTTTTTTT
1 AGTTTTCAGATTTCGTTTTTTT
10731492 A
1 A
10731493 ATATTTTTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 9 0.45
21 3 0.15
22 8 0.40
ACGTcount: A:0.14, C:0.07, G:0.12, T:0.67
Consensus pattern (22 bp):
AGTTTTCAGATTTCGTTTTTTT
Found at i:10733421 original size:26 final size:24
Alignment explanation
Indices: 10733379--10733430 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 24
10733369 AGTGTACGAG
10733379 TTTTTGAAAGTCAAAAGTCGATCGTA
1 TTTTTGAAAGTCAAAAG--GATCGTA
*
10733405 TTTTTGAAGGT-ATAAAGGATCGTA
1 TTTTTGAAAGTCA-AAAGGATCGTA
10733429 TT
1 TT
10733431 CAATCGTGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 9 0.38
25 1 0.04
26 14 0.58
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (24 bp):
TTTTTGAAAGTCAAAAGGATCGTA
Found at i:10734711 original size:11 final size:12
Alignment explanation
Indices: 10734694--10734726 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
10734684 CAAAACTACC
10734694 CAAACCCAATTA
1 CAAACCCAATTA
10734706 -AAACCCAATTA
1 CAAACCCAATTA
10734717 CAAAGCCCAA
1 CAAA-CCCAA
10734727 AACAAATCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 11 0.58
12 3 0.16
13 5 0.26
ACGTcount: A:0.52, C:0.33, G:0.03, T:0.12
Consensus pattern (12 bp):
CAAACCCAATTA
Found at i:10736028 original size:24 final size:26
Alignment explanation
Indices: 10736001--10736051 Score: 70
Period size: 24 Copynumber: 2.0 Consensus size: 26
10735991 TATTTTAAAC
10736001 TATTATCCATTTTAAA-T-TTATATA
1 TATTATCCATTTTAAAGTATTATATA
**
10736025 TATTATTTATTTTAAAGTATTATATA
1 TATTATCCATTTTAAAGTATTATATA
10736051 T
1 T
10736052 TATTTATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 14 0.61
25 1 0.04
26 8 0.35
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (26 bp):
TATTATCCATTTTAAAGTATTATATA
Found at i:10736215 original size:26 final size:24
Alignment explanation
Indices: 10736179--10736281 Score: 104
Period size: 26 Copynumber: 4.2 Consensus size: 24
10736169 AAGTATCTTA
10736179 TATATTATTTATTTGAAATTGCTTT
1 TATATTATTTATTTGAAATTG-TTT
*
10736204 GTATATTATTTA-TTGTAATTTGTTT
1 -TATATTATTTATTTG-AAATTGTTT
*
10736229 TACATATTATTTATTTTAAATTGTTT
1 T--ATATTATTTATTTGAAATTGTTT
*
10736255 TATATTATTTACTTCG-AATT-TTT
1 TATATTATTTA-TTTGAAATTGTTT
10736278 TATA
1 TATA
10736282 ACTTATTTTG
Statistics
Matches: 67, Mismatches: 5, Indels: 13
0.79 0.06 0.15
Matches are distributed among these distances:
23 7 0.10
24 15 0.22
25 8 0.12
26 35 0.52
27 2 0.03
ACGTcount: A:0.28, C:0.04, G:0.07, T:0.61
Consensus pattern (24 bp):
TATATTATTTATTTGAAATTGTTT
Found at i:10738046 original size:28 final size:28
Alignment explanation
Indices: 10737965--10738065 Score: 121
Period size: 28 Copynumber: 3.6 Consensus size: 28
10737955 GTCAAAATCG
* * * *
10737965 TAAAATCTAAAAAATAGAGGCAAAATTG
1 TAAAATCTAAAAAACAGTGGCAAAACTA
* * *
10737993 TAAAATCTGAAAAATAGTGGAAAAACTA
1 TAAAATCTAAAAAACAGTGGCAAAACTA
10738021 TAAAATCTAAAAAACAGTGGCAAAACTA
1 TAAAATCTAAAAAACAGTGGCAAAACTA
* *
10738049 TAAAATATGAAAAACAG
1 TAAAATCTAAAAAACAG
10738066 GGGACACAAG
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 63 1.00
ACGTcount: A:0.58, C:0.09, G:0.13, T:0.20
Consensus pattern (28 bp):
TAAAATCTAAAAAACAGTGGCAAAACTA
Found at i:10738973 original size:11 final size:12
Alignment explanation
Indices: 10738949--10739000 Score: 61
Period size: 12 Copynumber: 4.3 Consensus size: 12
10738939 TTAGCATGCT
10738949 AATTTTTATCTC
1 AATTTTTATCTC
10738961 AATTTTTAT-TC
1 AATTTTTATCTC
* * *
10738972 AATTTTTTTTTAT
1 AATTTTTATCT-C
10738985 AATTTTTATCTC
1 AATTTTTATCTC
10738997 AATT
1 AATT
10739001 CATATTTGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
11 10 0.30
12 14 0.42
13 9 0.27
ACGTcount: A:0.27, C:0.10, G:0.00, T:0.63
Consensus pattern (12 bp):
AATTTTTATCTC
Found at i:10739500 original size:30 final size:29
Alignment explanation
Indices: 10739466--10739523 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
10739456 ATTTTTAAAA
*
10739466 ATAAAAAATCAT-TAAATTTATTTAAAAATG
1 ATAAAAAAT-ATATAAATAT-TTTAAAAATG
10739496 ATAAAAAATATATAAATATTTTAAAAAT
1 ATAAAAAATATATAAATATTTTAAAAAT
10739524 TAATTAAATG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 11 0.42
30 15 0.58
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (29 bp):
ATAAAAAATATATAAATATTTTAAAAATG
Found at i:10740429 original size:28 final size:28
Alignment explanation
Indices: 10740389--10740445 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
10740379 GGTTGAAATC
*
10740389 ATAGGGGGTGATTTTACATTCCATTTTA
1 ATAGAGGGTGATTTTACATTCCATTTTA
10740417 ATAGAGGGTGATTTTACATTCCATTTTA
1 ATAGAGGGTGATTTTACATTCCATTTTA
10740445 A
1 A
10740446 CATTCTCACA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.28, C:0.11, G:0.19, T:0.42
Consensus pattern (28 bp):
ATAGAGGGTGATTTTACATTCCATTTTA
Found at i:10744344 original size:30 final size:31
Alignment explanation
Indices: 10744290--10744350 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
10744280 ATTGATCAAG
* *
10744290 TTCCATATACATGTATCATCCATTT-CATGT
1 TTCCATATACATGTAACATACATTTCCATGT
10744320 TTCCATATACCATGTAACA-ACATTTCCATGT
1 TTCCATATA-CATGTAACATACATTTCCATGT
10744351 AATTCATGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 14 0.52
31 13 0.48
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (31 bp):
TTCCATATACATGTAACATACATTTCCATGT
Found at i:10747407 original size:46 final size:46
Alignment explanation
Indices: 10747351--10747578 Score: 280
Period size: 46 Copynumber: 5.0 Consensus size: 46
10747341 AGTGTGCTCT
* *
10747351 CTGATATGAAATGTGTAAGACCGTGGTTGAAAGATACCATGGCAGC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
10747397 CTGGTATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* *
10747443 TTGATATAAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*** *
10747489 GC-GATATGAAATGAACAAGACCATGGTTGAAAGATACCATGACAAC
1 -CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * * *
10747535 ATGACA-GAAAATGAGTAAGACCATAGCTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
10747579 TCATGTCAAA
Statistics
Matches: 158, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
45 1 0.01
46 157 0.99
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:10752434 original size:244 final size:243
Alignment explanation
Indices: 10751985--10752470 Score: 670
Period size: 244 Copynumber: 2.0 Consensus size: 243
10751975 GTTAGATAAT
* *
10751985 CCTCCTTAGAGACCCAAGTTAGAGCTCCTTTCCTCCCATTTCCTTCCTCTTTTTTTTCGGCAACC
1 CCTCCTTAAAGACCCAAGTTAGAGCTCCTTTCCTCCCATTTCCTT-CTCTTTTTTTTCGACAACC
* *
10752050 TAGGTTAAAAGCCACACTTAAAATATATACAGTAAGGAATTAAAACTGAACAAGAATAGGCTTCA
65 TAGGGTAAAAGCAACACTTAAAATATATACAGTAAGGAATTAAAACTGAACAAGAATAGGCTTCA
* * * *
10752115 GGCCTAATGATTAAGAGTTAGCGTTCCTCCCTGGTGACCCTTGGTTCGAGCCACTCTTTCCCCAA
130 GGCCTAATGATTAAAAGTTAGCGTTCCTCCATGGTGACCCTCGGTTCGAGCCACTCCTTCCCCAA
* * * *
10752180 AAGTATTCATTTCATTTTTGACCAACTTTTGGGATATTTATCGTTGCCA
195 AAGCATTCATTTCATTTTCGACCAAATTTTGGGATATTTACCGTTGCCA
* * *
10752229 CCTCCTTAAAGACCTAAGTTCGAGCTCCTTTCCTCCCATTTCCTT-TCTTTTATTTTTGACAACC
1 CCTCCTTAAAGACCCAAGTTAGAGCTCCTTTCCTCCCATTTCCTTCTCTTTT-TTTTCGACAACC
* * * * *
10752293 TAGGGTAAAAGCAACACTTAAAATATATATAGTTAGGAATTAAAATTGAATAAGAAATAGGCTTT
65 TAGGGTAAAAGCAACACTTAAAATATATACAGTAAGGAATTAAAACTGAACAAG-AATAGGCTTC
* * * *
10752358 AGGCCTAATGGTTAAAAGTTAGC-TTCCCTCCATTGTGACCCTCGGTTCGAGTCACTCCTTCCTC
129 AGGCCTAATGATTAAAAGTTAGCGTT-CCTCCATGGTGACCCTCGGTTCGAGCCACTCCTTCCCC
* ***
10752422 AAAAGCATTCATTTTATTTTCGGTTAAATTTTGGGATATTTACCGTTGC
193 AAAAGCATTCATTTCATTTTCGACCAAATTTTGGGATATTTACCGTTGC
10752471 TGCCCTAGGG
Statistics
Matches: 211, Mismatches: 28, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
242 6 0.03
243 60 0.28
244 145 0.69
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.34
Consensus pattern (243 bp):
CCTCCTTAAAGACCCAAGTTAGAGCTCCTTTCCTCCCATTTCCTTCTCTTTTTTTTCGACAACCT
AGGGTAAAAGCAACACTTAAAATATATACAGTAAGGAATTAAAACTGAACAAGAATAGGCTTCAG
GCCTAATGATTAAAAGTTAGCGTTCCTCCATGGTGACCCTCGGTTCGAGCCACTCCTTCCCCAAA
AGCATTCATTTCATTTTCGACCAAATTTTGGGATATTTACCGTTGCCA
Found at i:10757839 original size:21 final size:21
Alignment explanation
Indices: 10757813--10757853 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
10757803 ACGTGGCAAG
10757813 TTAACTGGCCACATCAGCTAA
1 TTAACTGGCCACATCAGCTAA
**
10757834 TTAACTGGCCATGTCAGCTA
1 TTAACTGGCCACATCAGCTA
10757854 TTCCGTTAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (21 bp):
TTAACTGGCCACATCAGCTAA
Found at i:10763068 original size:15 final size:15
Alignment explanation
Indices: 10763048--10763081 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
10763038 TACCAAAAAG
10763048 GTATTTACAACAATT
1 GTATTTACAACAATT
**
10763063 GTATTTACGCCAATT
1 GTATTTACAACAATT
10763078 GTAT
1 GTAT
10763082 ATTCAAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.41
Consensus pattern (15 bp):
GTATTTACAACAATT
Found at i:10768387 original size:33 final size:30
Alignment explanation
Indices: 10768350--10768435 Score: 84
Period size: 33 Copynumber: 2.8 Consensus size: 30
10768340 ATAATGGGGT
10768350 GGTGGTGGAGGAGGAGACTTGTAAACGGCAGGA
1 GGTGGTGGAGGAGGAGACTTGTAAAC--C-GGA
** *
10768383 GGTGGTGGA-GACTTATACTTGTAAACCGGA
1 GGTGGTGGAGGA-GGAGACTTGTAAACCGGA
* *
10768413 GGTGGTGGGGGTGGAGACTTGTA
1 GGTGGTGGAGGAGGAGACTTGTA
10768436 CTTGTAAGGG
Statistics
Matches: 43, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
30 19 0.44
31 2 0.05
32 2 0.05
33 20 0.47
ACGTcount: A:0.23, C:0.09, G:0.45, T:0.22
Consensus pattern (30 bp):
GGTGGTGGAGGAGGAGACTTGTAAACCGGA
Found at i:10768433 original size:30 final size:32
Alignment explanation
Indices: 10768350--10768435 Score: 79
Period size: 30 Copynumber: 2.7 Consensus size: 32
10768340 ATAATGGGGT
* *
10768350 GGTGGTGGAGGAGGAGACTTGTAAACGGCAGGA
1 GGTGGTGGGGGTGGAGACTTGTAAAC-GCAGGA
** * *
10768383 GGTGGTGGAGACT-TATACTTGTAAAC-C-GGA
1 GGTGGTGG-GGGTGGAGACTTGTAAACGCAGGA
10768413 GGTGGTGGGGGTGGAGACTTGTA
1 GGTGGTGGGGGTGGAGACTTGTA
10768436 CTTGTAAGGG
Statistics
Matches: 41, Mismatches: 10, Indels: 7
0.71 0.17 0.12
Matches are distributed among these distances:
29 2 0.05
30 19 0.46
31 1 0.02
33 19 0.46
ACGTcount: A:0.23, C:0.09, G:0.45, T:0.22
Consensus pattern (32 bp):
GGTGGTGGGGGTGGAGACTTGTAAACGCAGGA
Found at i:10768520 original size:48 final size:48
Alignment explanation
Indices: 10768413--10768982 Score: 462
Period size: 51 Copynumber: 11.6 Consensus size: 48
10768403 GTAAACCGGA
*
10768413 GGTGGTGG-GGGTGGAGACTTGTACTTGTAAGGG-TGCTTGGGTGGGGAT
1 GGTGGTGGTGGG-GGAGACTTGTACTTGT-AGGGATGCTTGGGTGGTGAT
10768461 AGAGGTGGTGGTGGGGGAGACTTGTACTTGTAGGGATGCTTGGGTGGTGAT
1 ---GGTGGTGGTGGGGGAGACTTGTACTTGTAGGGATGCTTGGGTGGTGAT
* * *
10768512 GGTGGTGGTGGTGGTGGAGACTTGTACTTGTAAGGATGCTTTGGAGGTGAT
1 GGTGGTGGT-G-GG-GGAGACTTGTACTTGTAGGGATGCTTGGGTGGTGAT
* * *
10768563 GGTGGTGGTGGTGGAGACTTGTACTTATAAGGATGCTTTGGG-GGTGAT
1 GGTGGTGGTGGGGGAGACTTGTACTTGTAGGGATGC-TTGGGTGGTGAT
*
10768611 GGTGGTGGAGGTGGG-GACTTGTACTTGTAAGGG-TGCTTGGGTGGTGAT
1 GGTGGTGGTGG-GGGAGACTTGTACTTGT-AGGGATGCTTGGGTGGTGAT
10768659 GGTGGTGGAGGTGGTGGG-GACTTGTACTTGTAAGGG-TGCTTGGGTGGTGAT
1 GGTGGT---GGTGG-GGGAGACTTGTACTTGT-AGGGATGCTTGGGTGGTGAT
* * * * *
10768710 GGCGGTGGAGGTGGTGGAGACTTATACTTGTA---A-AC-----TGGAGAT
1 ---GGTGGTGGTGGGGGAGACTTGTACTTGTAGGGATGCTTGGGTGGTGAT
*
10768752 GGT-G-GG-GGTGGAGACTTGTACTTGTAAGGG-TGCTTGGGTGGTGAT
1 GGTGGTGGTGGGGGAGACTTGTACTTGT-AGGGATGCTTGGGTGGTGAT
* * *
10768797 GGTGGGGTGGGGGTGGGGTGGGGACTTGTACTTGTAGGGGTGTTTGGGTGGTGAT
1 GGT--GGT---GGT-GGG-GGAGACTTGTACTTGTAGGGATGCTTGGGTGGTGAT
* *
10768852 GGTGGTGGTGGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGAT
1 GGTGGTGGT-G-GG-GGAGACTTGTACTTGTAGGGATGCTTGGGTGGTGAT
* * *
10768903 GGTGTTGGAGGTGGAGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGAT
1 -G-G-TGGTGGTGGGGGAGACTTGTACTTGTAGGGATGCTTGGGTGGTGAT
* * *
10768954 GGAGGAGGTGGTGGG-GACTTATACTTGTA
1 GGTGGTGGTGG-GGGAGACTTGTACTTGTA
10768983 AACAGGAGTT
Statistics
Matches: 444, Mismatches: 32, Indels: 89
0.79 0.06 0.16
Matches are distributed among these distances:
36 18 0.04
37 3 0.01
38 1 0.00
39 3 0.01
40 1 0.00
42 6 0.01
45 9 0.02
47 6 0.01
48 97 0.22
49 14 0.03
50 16 0.04
51 209 0.47
52 7 0.02
53 5 0.01
54 17 0.04
55 32 0.07
ACGTcount: A:0.15, C:0.06, G:0.48, T:0.31
Consensus pattern (48 bp):
GGTGGTGGTGGGGGAGACTTGTACTTGTAGGGATGCTTGGGTGGTGAT
Found at i:10768583 original size:42 final size:42
Alignment explanation
Indices: 10768537--10768672 Score: 119
Period size: 48 Copynumber: 3.0 Consensus size: 42
10768527 GGAGACTTGT
*
10768537 ACTTGTAAGGATGCTTTGGAGGTGATGGTGGTGGTGGTGGAG
1 ACTTGTAAGGATGCTTTGGAGGTGATGGTGGTGGAGGTGGAG
*
10768579 ACTTGTACTTATAAGGATGCTTTGGGGGTGATGGTGGTGGAGGTGGGGACTTG
1 ACTTG------TAAGGATGCTTTGGAGGTGATGGTGGTGGAGGT--GGA---G
* * *
10768632 TACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGG
1 -ACTTGTAAGGATGCTTTGGAGGTGATGGTGGTGGAGGTGG
10768673 TGGGGACTTG
Statistics
Matches: 77, Mismatches: 5, Indels: 20
0.75 0.05 0.20
Matches are distributed among these distances:
42 5 0.06
46 2 0.03
48 61 0.79
50 3 0.04
53 1 0.01
54 5 0.06
ACGTcount: A:0.15, C:0.06, G:0.47, T:0.32
Consensus pattern (42 bp):
ACTTGTAAGGATGCTTTGGAGGTGATGGTGGTGGAGGTGGAG
Found at i:10768883 original size:106 final size:99
Alignment explanation
Indices: 10768425--10768983 Score: 621
Period size: 99 Copynumber: 5.7 Consensus size: 99
10768415 TGGTGGGGGT
* *
10768425 GGAGACTTGTACTTGTAAGGGTGCTTGGGTGGGGATAGAGGTGGTGGTGG-GGGAGACTTGTACT
1 GGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGAT---GGTGGTGGTGGTGGG-GACTTGTACT
* * *
10768489 TGTAGGGATGCTTGGGTGGTGATGGTGGTGGTGGTGGT
62 TGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGA
* * * *
10768527 GGAGACTTGTACTTGTAAGGATGCTTTGGAGGTGATGGTGGTGGTGGTGGAGACTTGTACTTATA
1 GGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGTGGTGGGGACTTGTACTTGTA
10768592 AGGATGCTTTGGG-GGTGATGGTGGTGGAGGT-G-
66 AGGATGC-TTGGGTGGTGATGGTGGTGGAGGTGGA
*
10768624 GG-GACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGTGGTGGAGGTGGTGGGGACTTGTACTT
1 GGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGT---GGTGGTGGGGACTTGTACTT
* * *
10768688 GTAAGGGTGCTTGGGTGGTGATGGCGGTGGAGGTGGT
63 GTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGA
* * *
10768725 GGAGACTTATACTTGTAA--A--C-----TGGAGATGGT-G-GG-GGTGGAGACTTGTACTTGTA
1 GGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGTGGTGGGGACTTGTACTTGTA
* * *
10768778 AGGGTGCTTGGGTGGTGATGGTGGGGTGGGGGTGGGGT
66 AGGATGCTTGGGTGGTGATGGT--GGTGGAGGT--GGA
* * * *
10768816 GGGGACTTGTACTTGTAGGGGTGTTTGGGTGGTGATGGTGGTGGTGGTGGTGGGGACTTGTACTT
1 GGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGA---TGGTGGTGGTGGTGGGGACTTGTACTT
*
10768881 GTAAGGATGCTTGGGTGGTGATGGTGTTGGAGGTGGA
63 GTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGA
* * *
10768918 GGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGAGGAGGTGGTGGGGACTTATACTTGTA
1 GGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGTGGTGGGGACTTGTACTTGTA
10768983 A
66 A
10768984 ACAGGAGTTG
Statistics
Matches: 390, Mismatches: 39, Indels: 59
0.80 0.08 0.12
Matches are distributed among these distances:
87 40 0.10
88 2 0.01
89 8 0.02
91 18 0.05
92 1 0.00
93 9 0.02
96 36 0.09
97 2 0.01
98 7 0.02
99 119 0.31
100 13 0.03
101 2 0.01
102 79 0.20
103 4 0.01
104 8 0.02
105 2 0.01
106 40 0.10
ACGTcount: A:0.15, C:0.06, G:0.48, T:0.31
Consensus pattern (99 bp):
GGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGTGGTGGGGACTTGTACTTGTA
AGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGA
Found at i:10770466 original size:42 final size:44
Alignment explanation
Indices: 10770387--10770468 Score: 125
Period size: 42 Copynumber: 1.9 Consensus size: 44
10770377 AAAACATAAC
*
10770387 TCAAATATTTGTTAATAATAAAAAATTATTAATAAATATTTAAT
1 TCAAATATTTATTAATAATAAAAAATTATTAATAAATATTTAAT
10770431 TCAAA-ATTTATTAATAAT-AAAAATTATTGAA-AAATATT
1 TCAAATATTTATTAATAATAAAAAATTATT-AATAAATATT
10770469 AAATACGTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
42 17 0.47
43 14 0.39
44 5 0.14
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (44 bp):
TCAAATATTTATTAATAATAAAAAATTATTAATAAATATTTAAT
Found at i:10772171 original size:21 final size:21
Alignment explanation
Indices: 10772142--10772183 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
10772132 AGAGTTTAGA
*
10772142 CTCTGTTAGTCTATTACCATT
1 CTCTATTAGTCTATTACCATT
*
10772163 CTCTATTAGTCTGTTACCATT
1 CTCTATTAGTCTATTACCATT
10772184 TTGTTATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.19, C:0.24, G:0.10, T:0.48
Consensus pattern (21 bp):
CTCTATTAGTCTATTACCATT
Found at i:10775881 original size:36 final size:36
Alignment explanation
Indices: 10775841--10775912 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
10775831 ATTGTCCTAA
10775841 TCAAGCGAATTTTCTAAAAGTATTTTCCCCAATTTT
1 TCAAGCGAATTTTCTAAAAGTATTTTCCCCAATTTT
10775877 TCAAGCGAATTTTCTAAAAGTATTTTCCCCAATTTT
1 TCAAGCGAATTTTCTAAAAGTATTTTCCCCAATTTT
10775913 CTTTCTCTGC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.31, C:0.19, G:0.08, T:0.42
Consensus pattern (36 bp):
TCAAGCGAATTTTCTAAAAGTATTTTCCCCAATTTT
Found at i:10782575 original size:13 final size:13
Alignment explanation
Indices: 10782557--10782583 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
10782547 AAGTCCTATG
10782557 TTATTTCACTTGT
1 TTATTTCACTTGT
10782570 TTATTTCACTTGT
1 TTATTTCACTTGT
10782583 T
1 T
10782584 CCTAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (13 bp):
TTATTTCACTTGT
Found at i:10789107 original size:17 final size:17
Alignment explanation
Indices: 10789077--10789115 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
10789067 GAAAAGCCCT
*
10789077 CCAAATCCTAGAGTTCA
1 CCAAAACCTAGAGTTCA
* *
10789094 CCAAAACCTGGAGTTCG
1 CCAAAACCTAGAGTTCA
10789111 CCAAA
1 CCAAA
10789116 TAGAGATTCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.31, G:0.15, T:0.18
Consensus pattern (17 bp):
CCAAAACCTAGAGTTCA
Found at i:10798245 original size:17 final size:18
Alignment explanation
Indices: 10798225--10798258 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
10798215 AAGGGAATTG
10798225 AAATTG-CGAAATTAAAT
1 AAATTGTCGAAATTAAAT
10798242 AAATTGTCGAAATTAAA
1 AAATTGTCGAAATTAAA
10798259 ATGAGGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.53, C:0.06, G:0.12, T:0.29
Consensus pattern (18 bp):
AAATTGTCGAAATTAAAT
Found at i:10803396 original size:38 final size:39
Alignment explanation
Indices: 10803335--10803412 Score: 131
Period size: 38 Copynumber: 2.0 Consensus size: 39
10803325 AAAAATTAAC
*
10803335 TAAGTTTTCAAAAAAAAAAAGTCACTGTGATGAGAAGAA
1 TAAGTTTTCAAAAAAAAAAAGTCACCGTGATGAGAAGAA
*
10803374 TAAGTTTTC-AAAAACAAAAGTCACCGTGATGAGAAGAA
1 TAAGTTTTCAAAAAAAAAAAGTCACCGTGATGAGAAGAA
10803412 T
1 T
10803413 GTCAAAATTA
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
38 28 0.76
39 9 0.24
ACGTcount: A:0.49, C:0.10, G:0.18, T:0.23
Consensus pattern (39 bp):
TAAGTTTTCAAAAAAAAAAAGTCACCGTGATGAGAAGAA
Found at i:10805853 original size:20 final size:20
Alignment explanation
Indices: 10805823--10805910 Score: 61
Period size: 20 Copynumber: 4.3 Consensus size: 20
10805813 TACTCAATGA
*
10805823 TGCATAACAGAGGCACCAAAG
1 TGCA-AACAAAGGCACCAAAG
* * **
10805844 TGCAAACAGAGGAAGGAATA-
1 TGCAAACAAAGGCACCAA-AG
* ***
10805864 TGCAATCAAAGGCATTGAAG
1 TGCAAACAAAGGCACCAAAG
*
10805884 TGCAAACAAATGCACCAAAG
1 TGCAAACAAAGGCACCAAAG
10805904 TGCAAAC
1 TGCAAAC
10805911 CCGTACAAGC
Statistics
Matches: 51, Mismatches: 14, Indels: 5
0.73 0.20 0.07
Matches are distributed among these distances:
19 1 0.02
20 45 0.88
21 5 0.10
ACGTcount: A:0.45, C:0.19, G:0.23, T:0.12
Consensus pattern (20 bp):
TGCAAACAAAGGCACCAAAG
Found at i:10807200 original size:11 final size:11
Alignment explanation
Indices: 10807186--10807210 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
10807176 ATATAACTCT
10807186 ATAAACATAAA
1 ATAAACATAAA
10807197 ATAAACATAAA
1 ATAAACATAAA
10807208 ATA
1 ATA
10807211 CTAACTCACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.08, G:0.00, T:0.20
Consensus pattern (11 bp):
ATAAACATAAA
Found at i:10808812 original size:31 final size:32
Alignment explanation
Indices: 10808750--10808814 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 32
10808740 GTATATAAAA
* * *
10808750 ATTAGATTAATTTATATTTTATATATCATTAT
1 ATTAAATTAATTTAAATATTATATATCATTAT
* *
10808782 ATTAAATT-ATTTAAATATTATTTATTATTAT
1 ATTAAATTAATTTAAATATTATATATCATTAT
10808813 AT
1 AT
10808815 CTTTTAATAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
31 21 0.75
32 7 0.25
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (32 bp):
ATTAAATTAATTTAAATATTATATATCATTAT
Found at i:10815517 original size:19 final size:20
Alignment explanation
Indices: 10815495--10815533 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
10815485 AAAGTTTTCT
*
10815495 AAAATTTTAAATAT-ATTAA
1 AAAATGTTAAATATAATTAA
*
10815514 AAAATGTTAAGTATAATTAA
1 AAAATGTTAAATATAATTAA
10815534 TTTTAAAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.38
Consensus pattern (20 bp):
AAAATGTTAAATATAATTAA
Found at i:10815557 original size:17 final size:17
Alignment explanation
Indices: 10815535--10815573 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
10815525 TATAATTAAT
*
10815535 TTTAAAAGTTTAATATA
1 TTTAAAAATTTAATATA
10815552 TTTAAAAATTTAATATA
1 TTTAAAAATTTAATATA
*
10815569 CTTAA
1 TTTAA
10815574 TATATATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (17 bp):
TTTAAAAATTTAATATA
Found at i:10815633 original size:9 final size:9
Alignment explanation
Indices: 10815617--10815667 Score: 50
Period size: 9 Copynumber: 5.7 Consensus size: 9
10815607 TTTTTAATAT
10815617 ATTT-AAAA
1 ATTTAAAAA
*
10815625 TTTTAAAAA
1 ATTTAAAAA
*
10815634 ACTTAAAAA
1 ATTTAAAAA
*
10815643 ATTTAAATA
1 ATTTAAAAA
*
10815652 CTTTAAAAA
1 ATTTAAAAA
10815661 ATATTAA
1 AT-TTAA
10815668 GTATAACTAA
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
8 3 0.09
9 26 0.79
10 4 0.12
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (9 bp):
ATTTAAAAA
Found at i:10815710 original size:11 final size:11
Alignment explanation
Indices: 10815686--10815738 Score: 69
Period size: 11 Copynumber: 5.2 Consensus size: 11
10815676 AATTTTAAAA
10815686 TTTTAATATA-
1 TTTTAATATAT
10815696 -TTTAATATAT
1 TTTTAATATAT
*
10815706 TTTTAAAATAT
1 TTTTAATATAT
10815717 TTTTAA-A-AT
1 TTTTAATATAT
10815726 TTTTAATATAT
1 TTTTAATATAT
10815737 TT
1 TT
10815739 AAATTTTTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
9 17 0.45
10 2 0.05
11 19 0.50
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTTAATATAT
Found at i:10815711 original size:20 final size:19
Alignment explanation
Indices: 10815686--10815749 Score: 78
Period size: 18 Copynumber: 3.3 Consensus size: 19
10815676 AATTTTAAAA
10815686 TTTTAATATATTTAATATAT
1 TTTTAATATATTTAA-ATAT
*
10815706 TTTTAAAATATTTTTAAA-AT
1 TTTT--AATATATTTAAATAT
10815726 TTTTAATATATTTAAAT-T
1 TTTTAATATATTTAAATAT
10815744 TTTTAA
1 TTTTAA
10815750 AGTTTTTTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
18 18 0.46
20 10 0.26
21 1 0.03
22 10 0.26
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TTTTAATATATTTAAATAT
Found at i:10815729 original size:10 final size:10
Alignment explanation
Indices: 10815705--10815765 Score: 65
Period size: 9 Copynumber: 6.3 Consensus size: 10
10815695 ATTTAATATA
10815705 TTTTTAAAAT
1 TTTTTAAAAT
10815715 ATTTTTAAAA-
1 -TTTTTAAAAT
*
10815725 TTTTTAATA-
1 TTTTTAAAAT
*
10815734 TATTT-AAAT
1 TTTTTAAAAT
*
10815743 TTTTTAAAGT
1 TTTTTAAAAT
10815753 TTTTTAAAAT
1 TTTTTAAAAT
10815763 TTT
1 TTT
10815766 AAATATATTA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
8 2 0.05
9 16 0.38
10 15 0.36
11 9 0.21
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (10 bp):
TTTTTAAAAT
Found at i:10815748 original size:9 final size:9
Alignment explanation
Indices: 10815704--10815769 Score: 55
Period size: 10 Copynumber: 7.2 Consensus size: 9
10815694 TATTTAATAT
*
10815704 ATTTTTAAA
1 ATTTTTTAA
10815713 ATATTTTTAA
1 AT-TTTTTAA
*
10815723 AATTTTT-A
1 ATTTTTTAA
*
10815731 ATATATTTAA
1 AT-TTTTTAA
10815741 ATTTTTTAA
1 ATTTTTTAA
10815750 AGTTTTTTAA
1 A-TTTTTTAA
*
10815760 A-ATTTTAA
1 ATTTTTTAA
10815768 AT
1 AT
10815770 ATATTAAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
8 9 0.20
9 18 0.39
10 19 0.41
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (9 bp):
ATTTTTTAA
Found at i:10815757 original size:37 final size:40
Alignment explanation
Indices: 10815678--10815774 Score: 148
Period size: 37 Copynumber: 2.5 Consensus size: 40
10815668 GTATAACTAA
10815678 TTTTAAAA-TTTTAATATATTTAATATATTTTTAAAATAT
1 TTTTAAAATTTTTAATATATTTAATATATTTTTAAAATAT
*
10815717 TTTTAAAATTTTTAATATATTTAA-AT-TTTTTAAAGT-T
1 TTTTAAAATTTTTAATATATTTAATATATTTTTAAAATAT
*
10815754 TTTTAAAATTTTAAATATATT
1 TTTTAAAATTTTTAATATATT
10815775 AAAAAAAATT
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
37 21 0.38
38 9 0.16
39 10 0.18
40 15 0.27
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (40 bp):
TTTTAAAATTTTTAATATATTTAATATATTTTTAAAATAT
Found at i:10815779 original size:18 final size:18
Alignment explanation
Indices: 10815607--10815872 Score: 67
Period size: 18 Copynumber: 13.4 Consensus size: 18
10815597 AAAAAATGAT
* *
10815607 TTTTTAATATATTTAAAA
1 TTTTAAATATATTAAAAA
*
10815625 TTTTAAA-AAACTTAAAAA
1 TTTTAAATATA-TTAAAAA
*
10815643 ATTTAAATACT-TTAAAAAA
1 TTTTAAATA-TATT-AAAAA
* *
10815662 TATTAAGTATAACTAATTTTAAAA
1 TTTTAA--AT-A-T-A-TTAAAAA
*
10815686 TTTT-AATATATTTAATATAT
1 TTTTAAATATA-TTAA-A-AA
* *
10815706 TTTTAAAATATTTTTAAAA
1 TTTT-AAATATATTAAAAA
* **
10815725 TTTTTAATATATTTAAATT
1 TTTTAAATATA-TTAAAAA
* *
10815744 TTTTAAAGT-TTTTTAAAA
1 TTTTAAA-TATATTAAAAA
10815762 TTTTAAATATATTAAAAAAAA
1 TTTTAAATATATT---AAAAA
* *
10815783 TTTCCTCATTACCTATTAAAAA
1 TTT--TAAATA--TATTAAAAA
10815805 TATATTAAATATATT-AAAA
1 T-T-TTAAATATATTAAAAA
10815824 TTTTAACATATATTTTTAAAATA
1 TTTTAA-ATATA---TTAAAA-A
10815847 TATATTAAATATATT-AAAA
1 T-T-TTAAATATATTAAAAA
10815866 TTTTAAA
1 TTTTAAA
10815873 ATTAGTTATA
Statistics
Matches: 184, Mismatches: 30, Indels: 69
0.65 0.11 0.24
Matches are distributed among these distances:
17 12 0.07
18 51 0.28
19 35 0.19
20 15 0.08
21 18 0.10
22 21 0.11
23 8 0.04
24 14 0.08
25 10 0.05
ACGTcount: A:0.48, C:0.03, G:0.01, T:0.47
Consensus pattern (18 bp):
TTTTAAATATATTAAAAA
Found at i:10816001 original size:17 final size:17
Alignment explanation
Indices: 10815979--10816019 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
10815969 TAAAAATATA
* *
10815979 TTTTAAGTATATTAAAT
1 TTTTAAATATATTAAAC
10815996 TTTTAAATATATTAAAC
1 TTTTAAATATATTAAAC
10816013 TTTTAAA
1 TTTTAAA
10816020 AATAATTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (17 bp):
TTTTAAATATATTAAAC
Found at i:10816032 original size:18 final size:17
Alignment explanation
Indices: 10815987--10816023 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
10815977 TATTTTAAGT
* *
10815987 ATATTAAATTTTTAAAT
1 ATATTAAACTTTTAAAA
10816004 ATATTAAACTTTTAAAA
1 ATATTAAACTTTTAAAA
10816021 ATA
1 ATA
10816024 ATTATACTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATTAAACTTTTAAAA
Found at i:10816047 original size:42 final size:42
Alignment explanation
Indices: 10815986--10816065 Score: 110
Period size: 42 Copynumber: 1.9 Consensus size: 42
10815976 ATATTTTAAG
*
10815986 TATATTAAATTTTTAAATATA-TTAAACTTTTA-AAAATAAT
1 TATATTAAATTTTTAAATATATTTAAAATTTTAGAAAATAAT
*
10816026 TATACTTAACATTTTTTAATATATTTAAAATTTTAGAAAA
1 TATA-TTAA-ATTTTTAAATATATTTAAAATTTTAGAAAA
10816066 CTTTAAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 4 0.12
41 4 0.12
42 12 0.35
43 10 0.29
44 4 0.12
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.47
Consensus pattern (42 bp):
TATATTAAATTTTTAAATATATTTAAAATTTTAGAAAATAAT
Found at i:10818765 original size:96 final size:99
Alignment explanation
Indices: 10818656--10819399 Score: 571
Period size: 102 Copynumber: 7.2 Consensus size: 99
10818646 TGGAGGAGGA
*
10818656 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGGGGTGATGGTGGGGGTGGTGG-GGGTGACT
1 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGGGGTGATGGTGGTGGTGGTGGTGGG-GACT
10818720 TGTACTTGTAGGGGTGCTTGGGTGGTGACGGT-G-
65 TGTACTTGTAGGGGTGCTTGGGTGGTGACGGTGGT
* * *
10818753 GG-GGTGGGGACTTGTACTTGTAAGGGTGCTTGGGGGGTGATGGTGGTGGTGGTGGAGGTGACTT
1 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGGGGTGATGGTGGTGGTGGTGGTGGGGACTT
10818817 GTACTTGTAGGGGTGCTTGGGTGGTGACGGTGGT
66 GTACTTGTAGGGGTGCTTGGGTGGTGACGGTGGT
* *
10818851 GGTGGTGGGGGGGACTTGTACTTGT-AGGGATGCTTTGGTGGG-GATGGTGGTGGTGGTGGTGGG
1 GGTGGT---GGAGACTTGTACTTGTAAGGG-TGC-TTGGGGGGTGATGGTGGTGGTGGTGGTGGG
* * * *
10818914 GACTTGTACTTGTAGGGATGCTTAGGTGGGGATGGTGGT
61 GACTTGTACTTGTAGGGGTGCTTGGGTGGTGACGGTGGT
* * * * * *
10818953 GGTGGTGGAGACTTGTATTTGTAAGGATGCTTTGGTGGTGATGTTGGTGGAGGTGGTGGGGACTT
1 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGGGGTGATGGTGGTGGTGGTGGTGGGGACTT
* * *
10819018 GTACTTGTAAGGGTGCTTGGGTGGTGATGGAGGTGGA
66 GTACTTGTAGGGGTGCTTGGGTGGTGA---CGGTGGT
* * * * * *
10819055 GGTGGTGGAGACTTATACTTGTAAACTGGAGGTGGTGGGGGTGGAGACTTGTACTTGTAGG-GGT
1 GGTGGTGGAGACTTGTACTTGT-AA---G-GGTGCTTGGGG-GGTGA--TG--GTGGT-GGTGGT
* * ** * *** * *
10819119 GCTTGGGTGA-TGATGGAGGTGGAGGTGGTGGAGACTTATACTTGTAAACTGGAGGTGGT
55 G-GTGGG-GACT--TGTACTTGTAGG-GGT---G-CTT-GGGTGGT-GAC----GGTGGT
* *
10819178 GGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGA---TGGT-G-GG-GGTGGGGACTT
1 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGGGGTGATGGTGGTGGTGGTGGTGGGGACTT
* * *
10819237 GTACTTGTAGGGGTGTTTAGGTGGTGATGGTGGTGGT
66 GTACTTGTAGGGGTGCTTGGGTGGTGA---CGGTGGT
* * * * * *
10819274 GGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTGGAGGAGACTT
1 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGGGGTGATGGTGGTGGTGGTGGTGGGGACTT
* * *
10819339 GTACTTGTAAGGATGCTTGGGTGGTGATGGTGGT
66 GTACTTGTAGGGGTGCTTGGGTGGTGACGGTGGT
*
10819373 GGAGGTGGTGGAGACTTATACTTGTAA
1 ---GGTGGTGGAGACTTGTACTTGTAA
10819400 ACAGGAGTTG
Statistics
Matches: 517, Mismatches: 77, Indels: 101
0.74 0.11 0.15
Matches are distributed among these distances:
96 131 0.25
97 6 0.01
98 10 0.02
99 80 0.15
100 5 0.01
101 6 0.01
102 158 0.31
103 12 0.02
104 8 0.02
105 2 0.00
106 6 0.01
107 7 0.01
108 7 0.01
110 5 0.01
112 7 0.01
113 7 0.01
114 2 0.00
115 7 0.01
116 3 0.01
117 4 0.01
118 8 0.02
119 2 0.00
120 3 0.01
121 3 0.01
122 3 0.01
123 25 0.05
ACGTcount: A:0.14, C:0.06, G:0.49, T:0.31
Consensus pattern (99 bp):
GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGGGGTGATGGTGGTGGTGGTGGTGGGGACTT
GTACTTGTAGGGGTGCTTGGGTGGTGACGGTGGT
Found at i:10818798 original size:39 final size:40
Alignment explanation
Indices: 10818701--10818798 Score: 108
Period size: 45 Copynumber: 2.4 Consensus size: 40
10818691 GGGTGATGGT
* *
10818701 GGGGGTGGTGG-GGGTGACTTGTACTTGTAGGGGTGCTTG
1 GGGGGTGATGGTGGGTGACTTGTACTTGTAAGGGTGCTTG
* *
10818740 GGTGGTGACGGTGGGGGTGGGGACTTGTACTTGTAAGGGTGCTTG
1 GGGGGTGATGGT--GGGT---GACTTGTACTTGTAAGGGTGCTTG
10818785 GGGGGTGATGGTGG
1 GGGGGTGATGGTGG
10818799 TGGTGGTGGA
Statistics
Matches: 47, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
39 8 0.17
42 4 0.09
43 2 0.04
45 33 0.70
ACGTcount: A:0.09, C:0.07, G:0.55, T:0.29
Consensus pattern (40 bp):
GGGGGTGATGGTGGGTGACTTGTACTTGTAAGGGTGCTTG
Found at i:10819050 original size:45 final size:45
Alignment explanation
Indices: 10818656--10819374 Score: 470
Period size: 51 Copynumber: 15.1 Consensus size: 45
10818646 TGGAGGAGGA
* *
10818656 GGTGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGGGGTGATGGT
1 GGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGT
* *
10818701 GGGGGTGGTGGGGGTGACTTGTACTTGTAGGGGTGCTTGGGTGGTGACGGT
1 ---GGTGGT--GGG-GACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGT
* *
10818752 GGGGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGGGGTGATGGTGGT
1 GGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGA---TGGT
*
10818800 GGTGGTGGAGGTGACTTGTACTTGTAGGGGTGCTTGGGTGGTGACGGTGGT
1 GGTGGT-G-GG-GACTTGTACTTGTAAGGGTGCTTGGGTGGTGA---TGGT
*
10818851 GGTGGTGGGGGGGACTTGTACTTGT-AGGGATGCTTTGGTGGGGATGGTGGTGGT
1 GGTGGT---GGGGACTTGTACTTGTAAGGG-TGC--T--T-GGG-TGGTGATGGT
* *
10818905 GGTGGTGGGGACTTGTACTTGT-AGGGATGCTTAGGTGGGGATGGT
1 GGTGGTGGGGACTTGTACTTGTAAGGG-TGCTTGGGTGGTGATGGT
* * *
10818950 GGTGGTGGTGGAGACTTGTATTTGTAAGGATGCTTTGGTGGTGATGTTGGT
1 GGTGGT-G-GG-GACTTGTACTTGTAAGGGTGCTTGGGTGGTGA---TGGT
10819001 GGAGGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGAGGT
1 ---GGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGAT---GGT
* * * *
10819052 GGAGGTGGTGGAGACTTATACTTGTAA----AC-T-GG-AG-G-TGGT
1 ---GGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGT
* * * *
10819091 GGGGGTGGAGACTTGTACTTGTAGGGGTGCTTGGGTGATGATGGAGGTGGA
1 GGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTG--G-T-GA--TGGT
* * * *
10819142 GGTGGTGGAGACTTATACTTGTAA----AC-T-GG-AG-G-TGGT
1 GGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGT
* *
10819178 GGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGT
1 GGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGT
* * * *
10819223 GGGGGTGGGGACTTGTACTTGTAGGGGTGTTTAGGTGGTGATGGTGGTGGT
1 GGTGGTGGGGACTTGTACTTGTAAGGGTG-CT---TGG-G-TGGTGATGGT
*
10819274 GGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGT
1 GGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGT
*
10819319 GGTGGAGGTGGAGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGT
1 GGT---GGT-G-GG-GACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGT
10819370 GGTGG
1 GGTGG
10819375 AGGTGGTGGA
Statistics
Matches: 551, Mismatches: 53, Indels: 134
0.75 0.07 0.18
Matches are distributed among these distances:
36 46 0.08
39 4 0.01
40 2 0.00
41 2 0.00
42 6 0.01
43 2 0.00
44 2 0.00
45 92 0.17
46 10 0.02
47 8 0.01
48 50 0.09
49 9 0.02
50 11 0.02
51 274 0.50
52 4 0.01
53 4 0.01
54 16 0.03
55 1 0.00
56 3 0.01
57 5 0.01
ACGTcount: A:0.13, C:0.06, G:0.49, T:0.31
Consensus pattern (45 bp):
GGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGT
Found at i:10819098 original size:36 final size:36
Alignment explanation
Indices: 10819045--10819113 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 36
10819035 TGGGTGGTGA
*
10819045 TGGAGGTGGAGGTGGTGGAGACTTATACTTGTAAAC
1 TGGAGGTGGAGGGGGTGGAGACTTATACTTGTAAAC
* *
10819081 TGGAGGTGGTGGGGGTGGAGACTTGTACTTGTA
1 TGGAGGTGGAGGGGGTGGAGACTTATACTTGTA
10819114 GGGGTGCTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.20, C:0.07, G:0.43, T:0.29
Consensus pattern (36 bp):
TGGAGGTGGAGGGGGTGGAGACTTATACTTGTAAAC
Found at i:10819098 original size:87 final size:87
Alignment explanation
Indices: 10818998--10819348 Score: 404
Period size: 87 Copynumber: 3.9 Consensus size: 87
10818988 TGGTGATGTT
* * *
10818998 GGTGGAGGTGGTGGGGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGAGGTGGAGGTGGTGG
1 GGTGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGAGGTGGAGGTGGTGG
10819063 AGACTTATACTTGTAAACTGGA
66 AGACTTATACTTGTAAACTGGA
* *
10819085 GGTGGTGGGGGTGGAGACTTGTACTTGTAGGGGTGCTTGGGTGATGATGGAGGTGGAGGTGGTGG
1 GGTGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGAGGTGGAGGTGGTGG
10819150 AGACTTATACTTGTAAACTGGA
66 AGACTTATACTTGTAAACTGGA
*
10819172 GGTGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGAT---GGTGGGGGTGG-GG
1 GGTGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGAGGTGGAGGTGGTGG
* ** * **
10819233 ACTTGTACTTGTAGGGGTGTTTAGGTGGTGA
66 A---G-ACTTATA--CTTG-TAAACT-G-GA
* * *
10819264 TGGTGGTGGTGGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGTGGTGGAGGTG
1 -GGTGGT-G-GG-GGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGAGGTGGAGGTG
* *
10819329 GAGGAGACTTGTACTTGTAA
62 GTGGAGACTTATACTTGTAA
10819349 GGATGCTTGG
Statistics
Matches: 227, Mismatches: 20, Indels: 28
0.83 0.07 0.10
Matches are distributed among these distances:
83 3 0.01
84 10 0.04
86 1 0.00
87 134 0.59
89 2 0.01
90 3 0.01
91 1 0.00
92 2 0.01
93 8 0.04
94 3 0.01
95 2 0.01
96 44 0.19
97 1 0.00
99 10 0.04
100 3 0.01
ACGTcount: A:0.16, C:0.06, G:0.48, T:0.30
Consensus pattern (87 bp):
GGTGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGAGGTGGAGGTGGTGG
AGACTTATACTTGTAAACTGGA
Found at i:10819185 original size:36 final size:36
Alignment explanation
Indices: 10819132--10819201 Score: 113
Period size: 36 Copynumber: 1.9 Consensus size: 36
10819122 TGGGTGATGA
*
10819132 TGGAGGTGGAGGTGGTGGAGACTTATACTTGTAAAC
1 TGGAGGTGGAGGGGGTGGAGACTTATACTTGTAAAC
* *
10819168 TGGAGGTGGTGGGGGTGGAGACTTGTACTTGTAA
1 TGGAGGTGGAGGGGGTGGAGACTTATACTTGTAA
10819202 GGGTGCTTGG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.21, C:0.07, G:0.43, T:0.29
Consensus pattern (36 bp):
TGGAGGTGGAGGGGGTGGAGACTTATACTTGTAAAC
Found at i:10819215 original size:39 final size:41
Alignment explanation
Indices: 10819171--10819262 Score: 107
Period size: 45 Copynumber: 2.2 Consensus size: 41
10819161 TGTAAACTGG
10819171 AGGTGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGT
1 AGGTGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTT--GT
* * *
10819214 GGTGATGGTGGGGGTGGGGACTTGTACTTGTAGGGGTG-TT-T
1 AG-G-TGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGT
10819255 AGGTGGTG
1 AGGTGGTG
10819263 ATGGTGGTGG
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
39 5 0.12
40 1 0.02
41 2 0.05
43 1 0.02
44 3 0.07
45 31 0.72
ACGTcount: A:0.12, C:0.05, G:0.51, T:0.32
Consensus pattern (41 bp):
AGGTGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGT
Found at i:10819413 original size:51 final size:51
Alignment explanation
Indices: 10819172--10819399 Score: 315
Period size: 51 Copynumber: 4.6 Consensus size: 51
10819162 GTAAACTGGA
* * *
10819172 GGTGGTGGGGGTGGAGACTTGTACTTGTAAGGGTGCTTGGGTGGTGATGGT
1 GGTGGAGGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGT
* * * *
10819223 -G-GG-GGT-G-GG-GACTTGTACTTGTAGGGGTGTTTAGGTGGTGATGGT
1 GGTGGAGGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGT
* *
10819268 GGTGGTGGTGGTGGGGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGT
1 GGTGGAGGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGT
*
10819319 GGTGGAGGTGGAGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGT
1 GGTGGAGGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGT
*
10819370 GGTGGAGGTGGTGGAGACTTATACTTGTAA
1 GGTGGAGGTGGTGGAGACTTGTACTTGTAA
10819400 ACAGGAGTTG
Statistics
Matches: 158, Mismatches: 13, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
45 33 0.21
46 3 0.02
47 3 0.02
48 5 0.03
49 3 0.02
50 3 0.02
51 108 0.68
ACGTcount: A:0.14, C:0.06, G:0.48, T:0.32
Consensus pattern (51 bp):
GGTGGAGGTGGTGGAGACTTGTACTTGTAAGGATGCTTGGGTGGTGATGGT
Found at i:10822115 original size:12 final size:12
Alignment explanation
Indices: 10822094--10822132 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
10822084 AAATACAGTA
*
10822094 AAAAGTAAAAAG
1 AAAAGAAAAAAG
10822106 AAAAGAAAAAAG
1 AAAAGAAAAAAG
*
10822118 AAAAAGAAAAGAG
1 -AAAAGAAAAAAG
10822131 AA
1 AA
10822133 CCAAGAACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 13 0.54
13 11 0.46
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (12 bp):
AAAAGAAAAAAG
Found at i:10822121 original size:18 final size:19
Alignment explanation
Indices: 10822093--10822129 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
10822083 CAAATACAGT
10822093 AAAAAGTAAAAAGAAAAGA
1 AAAAAGTAAAAAGAAAAGA
10822112 AAAAAG-AAAAAGAAAAGA
1 AAAAAGTAAAAAGAAAAGA
10822130 GAACCAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.03
Consensus pattern (19 bp):
AAAAAGTAAAAAGAAAAGA
Found at i:10825614 original size:50 final size:50
Alignment explanation
Indices: 10825490--10825738 Score: 293
Period size: 50 Copynumber: 4.8 Consensus size: 50
10825480 GATAATAACA
* * ** * *
10825490 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
10825541 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
10825591 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
10825641 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
10825696 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
10825739 TTACCCAAAT
Statistics
Matches: 172, Mismatches: 19, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 93 0.54
51 33 0.19
53 3 0.02
54 1 0.01
55 2 0.01
56 39 0.23
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:10825676 original size:100 final size:104
Alignment explanation
Indices: 10825489--10825738 Score: 348
Period size: 100 Copynumber: 2.4 Consensus size: 104
10825479 TGATAATAAC
** *
10825489 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATGATGGTGCCCATGCCATG
* *
10825554 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
10825591 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATGAT-GGTGCCCATGCCATG
10825654 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
10825696 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
10825739 TTACCCAAAT
Statistics
Matches: 132, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
99 1 0.01
100 49 0.37
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:10826098 original size:30 final size:30
Alignment explanation
Indices: 10826063--10826120 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
10826053 CCTCGACTCT
*
10826063 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
10826093 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
10826121 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:10828691 original size:24 final size:23
Alignment explanation
Indices: 10828643--10828692 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
10828633 AAAGTAATTA
*
10828643 ATTTTTCTGTTAAAAATTGTATCT
1 ATTTTTCTATTAAAAATTG-ATCT
10828667 ATTTTTACTATTAAAAACTTG-TCT
1 ATTTTT-CTATTAAAAA-TTGATCT
10828691 AT
1 AT
10828693 GTACGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
24 11 0.48
25 9 0.39
26 3 0.13
ACGTcount: A:0.32, C:0.10, G:0.06, T:0.52
Consensus pattern (23 bp):
ATTTTTCTATTAAAAATTGATCT
Found at i:10833653 original size:26 final size:26
Alignment explanation
Indices: 10833622--10833729 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
10833612 TGAAATGCCC
*
10833622 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
10833648 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
10833674 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
10833700 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
10833726 ATCA
1 ATCA
10833730 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:10840744 original size:26 final size:26
Alignment explanation
Indices: 10840705--10840811 Score: 153
Period size: 26 Copynumber: 4.2 Consensus size: 26
10840695 TGAAATGCCC
* * *
10840705 ATCATGGAATATTTACCTAAACTATT
1 ATCATGGAACATTTACCTAACCCATT
10840731 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
10840757 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
10840783 ATTA-GGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
10840808 ATCA
1 ATCA
10840812 ATTTGTACCT
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
25 22 0.31
26 50 0.69
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.35
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:10840811 original size:51 final size:52
Alignment explanation
Indices: 10840705--10840811 Score: 180
Period size: 52 Copynumber: 2.1 Consensus size: 52
10840695 TGAAATGCCC
*
10840705 ATCATGGAATATTTACCTAAACTATTATCATGGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
* *
10840757 ATCATGGAATATTTACCTAATCCATTATTA-GGAACATTTACCTAACCCATT
1 ATCATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
10840808 ATCA
1 ATCA
10840812 ATTTGTACCT
Statistics
Matches: 52, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
51 25 0.48
52 27 0.52
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.35
Consensus pattern (52 bp):
ATCATGGAATATTTACCTAAACCATTATCATGGAACATTTACCTAACCCATT
Found at i:10842769 original size:122 final size:122
Alignment explanation
Indices: 10842552--10842795 Score: 416
Period size: 122 Copynumber: 2.0 Consensus size: 122
10842542 AAATGTCTGT
* * *
10842552 CAATTAAGCACAAGTAGACAAGAATAAACTTGAGCAAAAGAAAGACAATAAGAGCTCACAAGTGT
1 CAATTAAGCACAAATAGACAAGAACAAACTTAAGCAAAAGAAAGACAATAAGAGCTCACAAGTGT
* *
10842617 GTACAAGAGAATTGTGGAAGTATTGAGTACAAAGGTTGTTTGATTGATAATTTTTGC
66 GTACAAGAGAAGTATGGAAGTATTGAGTACAAAGGTTGTTTGATTGATAATTTTTGC
* * *
10842674 CAATTAAGCACAAATAGACAAGAACACACTTAAGCAAAAGAAAGACGATAAGAGCTCATAAGTGT
1 CAATTAAGCACAAATAGACAAGAACAAACTTAAGCAAAAGAAAGACAATAAGAGCTCACAAGTGT
10842739 GTACAAGAGAAGTATGGAAGTATTGAGTACAAAGGTTGTTTGATTGATAATTTTTGC
66 GTACAAGAGAAGTATGGAAGTATTGAGTACAAAGGTTGTTTGATTGATAATTTTTGC
10842796 TCCAATATGC
Statistics
Matches: 114, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
122 114 1.00
ACGTcount: A:0.42, C:0.11, G:0.22, T:0.25
Consensus pattern (122 bp):
CAATTAAGCACAAATAGACAAGAACAAACTTAAGCAAAAGAAAGACAATAAGAGCTCACAAGTGT
GTACAAGAGAAGTATGGAAGTATTGAGTACAAAGGTTGTTTGATTGATAATTTTTGC
Found at i:10843959 original size:13 final size:13
Alignment explanation
Indices: 10843941--10843966 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10843931 TATTTTCAGG
10843941 TCATTTTCATTTT
1 TCATTTTCATTTT
10843954 TCATTTTCATTTT
1 TCATTTTCATTTT
10843967 GAATAAAACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69
Consensus pattern (13 bp):
TCATTTTCATTTT
Found at i:10846662 original size:36 final size:36
Alignment explanation
Indices: 10846615--10846686 Score: 135
Period size: 36 Copynumber: 2.0 Consensus size: 36
10846605 TTTGGAATGT
10846615 GACATTCCAAGAAATAATAATCTTATGTTCAAACTC
1 GACATTCCAAGAAATAATAATCTTATGTTCAAACTC
*
10846651 GACATTCCAAGAGATAATAATCTTATGTTCAAACTC
1 GACATTCCAAGAAATAATAATCTTATGTTCAAACTC
10846687 TACTAAATGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (36 bp):
GACATTCCAAGAAATAATAATCTTATGTTCAAACTC
Found at i:10846780 original size:23 final size:24
Alignment explanation
Indices: 10846735--10846780 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
10846725 TTCTTTAAAA
*
10846735 ATTTTATTAAATTTTAGTATTTTC
1 ATTTTATTAAATTTTAATATTTTC
*
10846759 ATTTTATTAATTTTTAAT-TTTT
1 ATTTTATTAAATTTTAATATTTT
10846781 AATTATTAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.67
Consensus pattern (24 bp):
ATTTTATTAAATTTTAATATTTTC
Found at i:10846944 original size:39 final size:39
Alignment explanation
Indices: 10846843--10846944 Score: 98
Period size: 39 Copynumber: 2.6 Consensus size: 39
10846833 ATATTTTTAC
* *
10846843 TAAATTTATTTTTTCTATTTTTTAATAGTTTTGCAAATTT
1 TAAA-TTATTTTTTCTATTTTTTAATAATTTTACAAATTT
* * * * *
10846883 TTAATTAATTCTTTGTAATTTTT-ATAATTTTATAAATTT
1 TAAATT-ATTTTTTCTATTTTTTAATAATTTTACAAATTT
*
10846922 TAAATATATTTTTTTTATTTTTT
1 TAAAT-TATTTTTTCTATTTTTT
10846945 GTATGTACTT
Statistics
Matches: 49, Mismatches: 11, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
39 32 0.65
40 17 0.35
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (39 bp):
TAAATTATTTTTTCTATTTTTTAATAATTTTACAAATTT
Found at i:10856957 original size:17 final size:17
Alignment explanation
Indices: 10856935--10856969 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
10856925 GCTACTTCGA
10856935 AGTGTATTCTCATGAAT
1 AGTGTATTCTCATGAAT
* *
10856952 AGTGTATTTTGATGAAT
1 AGTGTATTCTCATGAAT
10856969 A
1 A
10856970 TTTGATGCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.20, T:0.43
Consensus pattern (17 bp):
AGTGTATTCTCATGAAT
Found at i:10857867 original size:140 final size:140
Alignment explanation
Indices: 10857608--10857870 Score: 393
Period size: 140 Copynumber: 1.9 Consensus size: 140
10857598 CTTCTGGGTC
* * *
10857608 GACAGTTTCCTAAGTGTTGGGATAGACTTGCCAATATATGCTTTGGCCAACTCTTTGTATAAGGG
1 GACAGTTTCCTAAGTGTTGGGATAAACTTGCCAACATACGCTTTGGCCAACTCTTTGTATAAGGG
* * *
10857673 TTGCGATATGCATGTCTAAGGCAAAACTTAAATAACAGTCGGCTTTGTCCAACACTATACCGGTA
66 TTGCGATATGCATGCCTAAGGCAAAACTTAAATAACAGTCGCCCTTGTCCAACACTATACCGGTA
10857738 CTTTTAGGCT
131 CTTTTAGGCT
* * *
10857748 GACATTTTCCTAAGTGTTGGGATAAACTTG-CAGACATACGCTTTGGCCAACTTTTTGTATAATG
1 GACAGTTTCCTAAGTGTTGGGATAAACTTGCCA-ACATACGCTTTGGCCAACTCTTTGTATAAGG
* * * *
10857812 GTTGGGATATGCATGCCTAAGGCAACACTTAAATAAGAGTCGCCCTTGTCTAACACTAT
65 GTTGCGATATGCATGCCTAAGGCAAAACTTAAATAACAGTCGCCCTTGTCCAACACTAT
10857871 GCCGACTTTT
Statistics
Matches: 109, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
139 2 0.02
140 107 0.98
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (140 bp):
GACAGTTTCCTAAGTGTTGGGATAAACTTGCCAACATACGCTTTGGCCAACTCTTTGTATAAGGG
TTGCGATATGCATGCCTAAGGCAAAACTTAAATAACAGTCGCCCTTGTCCAACACTATACCGGTA
CTTTTAGGCT
Found at i:10857959 original size:16 final size:16
Alignment explanation
Indices: 10857938--10857988 Score: 56
Period size: 16 Copynumber: 3.3 Consensus size: 16
10857928 ACACAAATGG
10857938 TATGAAATGGCATGTT
1 TATGAAATGGCATGTT
10857954 TATGAATTATGG--TG-T
1 TATGAA--ATGGCATGTT
10857969 T-TGAAATGGCATGTT
1 TATGAAATGGCATGTT
10857984 TATGA
1 TATGA
10857989 GTGTTTGAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 12
0.71 0.00 0.29
Matches are distributed among these distances:
12 4 0.14
14 6 0.21
15 4 0.14
16 11 0.38
18 4 0.14
ACGTcount: A:0.29, C:0.04, G:0.25, T:0.41
Consensus pattern (16 bp):
TATGAAATGGCATGTT
Found at i:10858699 original size:9 final size:9
Alignment explanation
Indices: 10858684--10858717 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
10858674 TAGCACAGCT
10858684 AAAGAAGAA
1 AAAGAAGAA
*
10858693 GAAGAAGAA
1 AAAGAAGAA
*
10858702 AAAGAAAAA
1 AAAGAAGAA
10858711 AAAGAAG
1 AAAGAAG
10858718 TAATGGATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (9 bp):
AAAGAAGAA
Found at i:10860991 original size:35 final size:35
Alignment explanation
Indices: 10860952--10861111 Score: 203
Period size: 35 Copynumber: 4.6 Consensus size: 35
10860942 CATTAGACAT
**
10860952 GTCTATCCCAATATTTTTAAGGTTGCCTTAGACGG
1 GTCTATCCCAACCTTTTTAAGGTTGCCTTAGACGG
** *
10860987 GTCTATCCCAACCTTTTTAAAATTTCCTTAGACGG
1 GTCTATCCCAACCTTTTTAAGGTTGCCTTAGACGG
*
10861022 GTCTATCTCAACCTTTTTAAGGTTGCCTTAGACGG
1 GTCTATCCCAACCTTTTTAAGGTTGCCTTAGACGG
* * * * *
10861057 GTGTATCCCAACTTTTTTAAGGTTGACTTAAACGA
1 GTCTATCCCAACCTTTTTAAGGTTGCCTTAGACGG
* *
10861092 GTTTATTCCAACCTTTTTAA
1 GTCTATCCCAACCTTTTTAA
10861112 AGTCACATTT
Statistics
Matches: 107, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 107 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (35 bp):
GTCTATCCCAACCTTTTTAAGGTTGCCTTAGACGG
Found at i:10862906 original size:3 final size:3
Alignment explanation
Indices: 10862898--10862941 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
10862888 TTTTTATGAC
10862898 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
10862942 GTGTTTTCCT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:10866859 original size:101 final size:101
Alignment explanation
Indices: 10866684--10866887 Score: 329
Period size: 101 Copynumber: 2.0 Consensus size: 101
10866674 TTGGTTTATA
** *
10866684 AGTTAAACTCATTCAATTAATGTTAAGAATGAGTCTGCTGATTCAATGGTTAAGTTTCTGTATGC
1 AGTTAAACTCATTCAATTAATGCCAAGAATGAGTCTGCTGATTCAATGGTTAAGTTTCTGTATAC
10866749 TATTGGGTCTTATGTTCAAATCCCGATGAAAGCAAT
66 TATTGGGTCTTATGTTCAAATCCCGATGAAAGCAAT
* * * *
10866785 AGTTAAACTCATTCAATTAATGCCAAGAATGAG-CTTGTTGGTTTAATGGTTAAGTTTTTGTATA
1 AGTTAAACTCATTCAATTAATGCCAAGAATGAGTC-TGCTGATTCAATGGTTAAGTTTCTGTATA
10866849 CTATTGGGTCTTATGTTCAAATCCCGATGAAAGCAAT
65 CTATTGGGTCTTATGTTCAAATCCCGATGAAAGCAAT
10866886 AG
1 AG
10866888 GAAATGTTTT
Statistics
Matches: 95, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
100 1 0.01
101 94 0.99
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (101 bp):
AGTTAAACTCATTCAATTAATGCCAAGAATGAGTCTGCTGATTCAATGGTTAAGTTTCTGTATAC
TATTGGGTCTTATGTTCAAATCCCGATGAAAGCAAT
Found at i:10869571 original size:18 final size:16
Alignment explanation
Indices: 10869513--10869572 Score: 54
Period size: 16 Copynumber: 3.8 Consensus size: 16
10869503 TTTTTAATCA
*
10869513 TAAAATTTTAAAATA-
1 TAAAAATTTAAAATAT
* *
10869528 TAAAAA--GAAATTAT
1 TAAAAATTTAAAATAT
10869542 TAAAAATTTAAAATAT
1 TAAAAATTTAAAATAT
10869558 TATAAAATTATAAAA
1 TA-AAAATT-TAAAA
10869573 AGAAGGAGAA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
13 5 0.14
14 6 0.17
15 5 0.14
16 8 0.23
17 6 0.17
18 5 0.14
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (16 bp):
TAAAAATTTAAAATAT
Found at i:10871872 original size:25 final size:26
Alignment explanation
Indices: 10871842--10871898 Score: 80
Period size: 25 Copynumber: 2.2 Consensus size: 26
10871832 TCTTTCTCAA
*
10871842 TAAAAATTATAATATTTA-AAATATT
1 TAAAAATTATAAAATTTATAAATATT
* *
10871867 TAAAAATTCTAAAATTTATATATATT
1 TAAAAATTATAAAATTTATAAATATT
10871893 TAAAAA
1 TAAAAA
10871899 ATCATAACTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 16 0.57
26 12 0.43
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (26 bp):
TAAAAATTATAAAATTTATAAATATT
Found at i:10878340 original size:21 final size:21
Alignment explanation
Indices: 10878314--10878357 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
10878304 GTGCCAAAGA
10878314 ATGGATGAATCTGTAGAAGCC
1 ATGGATGAATCTGTAGAAGCC
10878335 ATGGATGAATCTGTAGAAGCC
1 ATGGATGAATCTGTAGAAGCC
10878356 AT
1 AT
10878358 TGTAACAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.25
Consensus pattern (21 bp):
ATGGATGAATCTGTAGAAGCC
Found at i:10891265 original size:43 final size:45
Alignment explanation
Indices: 10891218--10891304 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 45
10891208 TATATATAGG
*
10891218 GTTAGAAGTTGT-T-ACCTAAATTCATGTTAAATATAAAATACAT
1 GTTAGAAGTTGTGTAACCTAAATTCATGTTAAACATAAAATACAT
*
10891261 GTTAGAAGTTGTGTAACTTAAATTCATGTTAAACATAAAATACA
1 GTTAGAAGTTGTGTAACCTAAATTCATGTTAAACATAAAATACA
10891305 AGTGGCAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
43 12 0.30
44 1 0.03
45 27 0.68
ACGTcount: A:0.43, C:0.09, G:0.13, T:0.36
Consensus pattern (45 bp):
GTTAGAAGTTGTGTAACCTAAATTCATGTTAAACATAAAATACAT
Found at i:10892882 original size:35 final size:35
Alignment explanation
Indices: 10892796--10892865 Score: 117
Period size: 35 Copynumber: 2.1 Consensus size: 35
10892786 TACAAATGGG
*
10892796 GTAACATAATATAT--AAAAAATCATATATTTTAT
1 GTAACTTAATATATAAAAAAAATCATATATTTTAT
10892829 GTAACTTAATATATAAAAAAAATCATATATTTTAT
1 GTAACTTAATATATAAAAAAAATCATATATTTTAT
10892864 GT
1 GT
10892866 TTACTTTACT
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
33 13 0.38
35 21 0.62
ACGTcount: A:0.50, C:0.06, G:0.04, T:0.40
Consensus pattern (35 bp):
GTAACTTAATATATAAAAAAAATCATATATTTTAT
Found at i:10897285 original size:19 final size:20
Alignment explanation
Indices: 10897248--10897288 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
10897238 TACAACACAA
*
10897248 TTCAATTTCATATTGAATAT
1 TTCAATTTCATATTCAATAT
*
10897268 TTCAATTT-TTATTCAATAT
1 TTCAATTTCATATTCAATAT
10897287 TT
1 TT
10897289 GCCTAAATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.32, C:0.10, G:0.02, T:0.56
Consensus pattern (20 bp):
TTCAATTTCATATTCAATAT
Found at i:10899956 original size:29 final size:30
Alignment explanation
Indices: 10899899--10899956 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 30
10899889 CACCCTTAAA
* * * *
10899899 ATATTTGCACTCTTAGTCCTTCAACTTTTC
1 ATATTTACACTCTTAATCCCTCAAATTTTC
10899929 ATATTTACACT-TTAATCCCTCAAATTTT
1 ATATTTACACTCTTAATCCCTCAAATTTT
10899957 GAGTAGTTGC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 14 0.58
30 10 0.42
ACGTcount: A:0.26, C:0.24, G:0.03, T:0.47
Consensus pattern (30 bp):
ATATTTACACTCTTAATCCCTCAAATTTTC
Found at i:10911812 original size:7 final size:7
Alignment explanation
Indices: 10911800--10911824 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
10911790 GAAAATACTC
10911800 AAAATTG
1 AAAATTG
10911807 AAAATTG
1 AAAATTG
10911814 AAAATTG
1 AAAATTG
10911821 AAAA
1 AAAA
10911825 AGTTGGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (7 bp):
AAAATTG
Found at i:10918875 original size:15 final size:15
Alignment explanation
Indices: 10918855--10918885 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
10918845 GTACAAGTGA
10918855 GTCACACGCCCATGT
1 GTCACACGCCCATGT
10918870 GTCACACGCCCATGT
1 GTCACACGCCCATGT
10918885 G
1 G
10918886 AACAGGCCGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.39, G:0.23, T:0.19
Consensus pattern (15 bp):
GTCACACGCCCATGT
Found at i:10921713 original size:33 final size:29
Alignment explanation
Indices: 10921653--10921711 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
10921643 TGTACGTACC
*
10921653 TGCATTGCTTAATTTATTTACACTTTCTT
1 TGCATTGCTTAATTCATTTACACTTTCTT
10921682 TGCATTGCTTAATTCATTTACACTTTCTT
1 TGCATTGCTTAATTCATTTACACTTTCTT
10921711 T
1 T
10921712 CTCGACTTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.20, C:0.19, G:0.07, T:0.54
Consensus pattern (29 bp):
TGCATTGCTTAATTCATTTACACTTTCTT
Found at i:10921929 original size:43 final size:43
Alignment explanation
Indices: 10921882--10921992 Score: 177
Period size: 43 Copynumber: 2.6 Consensus size: 43
10921872 TCGATGTCCC
* *
10921882 ACACATGGTCTTACACGTAATCGCAATACAATGCCACTATCCA
1 ACACAGGGTCTTACACGTAATCACAATACAATGCCACTATCCA
* *
10921925 ACACAGGGTCTTACACGTAATCACAATACAATGCCACTGTCCC
1 ACACAGGGTCTTACACGTAATCACAATACAATGCCACTATCCA
*
10921968 ACACAGGGTCTTACATGTAATCACA
1 ACACAGGGTCTTACACGTAATCACA
10921993 TCTCGATAAC
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 63 1.00
ACGTcount: A:0.34, C:0.30, G:0.14, T:0.23
Consensus pattern (43 bp):
ACACAGGGTCTTACACGTAATCACAATACAATGCCACTATCCA
Found at i:10933293 original size:16 final size:16
Alignment explanation
Indices: 10933274--10933304 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10933264 CATCAACCAC
10933274 GTCAATTTTTAACCTT
1 GTCAATTTTTAACCTT
*
10933290 GTCAGTTTTTAACCT
1 GTCAATTTTTAACCT
10933305 ACAAATTGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.19, G:0.10, T:0.48
Consensus pattern (16 bp):
GTCAATTTTTAACCTT
Found at i:10938871 original size:19 final size:20
Alignment explanation
Indices: 10938835--10938872 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
10938825 TTTTGCATTC
* *
10938835 ATTTCATTCATCTGCATTAT
1 ATTTCATTCATATACATTAT
10938855 ATTTCA-TCATATACATTA
1 ATTTCATTCATATACATTA
10938873 AGTTTCATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 10 0.62
20 6 0.38
ACGTcount: A:0.32, C:0.18, G:0.03, T:0.47
Consensus pattern (20 bp):
ATTTCATTCATATACATTAT
Found at i:10946894 original size:44 final size:44
Alignment explanation
Indices: 10946778--10947237 Score: 369
Period size: 44 Copynumber: 10.5 Consensus size: 44
10946768 ATTAACATGG
* * *
10946778 CAAATATTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAACATA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA
** * * *
10946822 GTGAATCTAATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGTTA
1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA
* *
10946867 CAAATCGTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAACATA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA
* * * * *
10946911 GTAAATCTAATCTCCCTGAAGTTGTAGTGGAGCAGATT-AACACCA
1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA-TA
* * ** * * *
10946956 CAAAACTTATCTCCCTAAAGTTGCAGTAAAGTAGGTTGAAG-TGG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGAT-A
* * * **
10947000 CGAATCTTATCTCCCTAAAGTTACAGTGGAGCAGATTGAAGCCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA
* * * * *
10947044 CTAATCTTATCTCCCTAAAGTTGCGGTGGAGCAGATT-AAAACCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGA-TA
* * * * * *
10947088 CAAACCTTATCTCCTTGAAGTTACA-TAGAGTAGGTTG-A-A-A
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA
* * *
10947128 CAAATATCATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGATA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA
* * * ** *
10947172 CGAATCTTATTTCCCTGAAGTTGCAATGGAATAGATTGTAGATA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA
* *
10947216 CGAGTC-TAGTCTCCCTGAAGTT
1 CAAATCTTA-TCTCCCTGAAGTT
10947238 ATATTGGAGT
Statistics
Matches: 328, Mismatches: 75, Indels: 25
0.77 0.18 0.06
Matches are distributed among these distances:
40 21 0.06
41 8 0.02
42 2 0.01
43 14 0.04
44 211 0.64
45 72 0.22
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (44 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA
Found at i:10946897 original size:89 final size:89
Alignment explanation
Indices: 10946778--10947201 Score: 398
Period size: 89 Copynumber: 4.8 Consensus size: 89
10946768 ATTAACATGG
* * * *
10946778 CAAATATTATCTCTCTGAAGTTGCAGTGGAGCAGATTGAACATAGTGAATCTAATCTCCCTGAAG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAACATAGCGAATCTTATCTCCCTGAAG
* **
10946843 TTGCAGTGGAGCAGGTTGAAGTTA
66 TTGCAGTGGAGCAGATTGAAGCCA
* ** *
10946867 CAAATCGTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAACATAGTAAATCTAATCTCCCTGAAG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAACATAGCGAATCTTATCTCCCTGAAG
* *
10946932 TTGTAGTGGAGCAGATT-AACACCA
66 TTGCAGTGGAGCAGATTGAA-GCCA
* * ** * * * * *
10946956 CAAAACTTATCTCCCTAAAGTTGCAGTAAAGTAGGTTGAA-GTGGCGAATCTTATCTCCCTAAAG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAACATAGCGAATCTTATCTCCCTGAAG
*
10947020 TTACAGTGGAGCAGATTGAAGCCA
66 TTGCAGTGGAGCAGATTGAAGCCA
* * * * * * * *
10947044 CTAATCTTATCTCCCTAAAGTTGCGGTGGAGCAGATT-AAAACCA-CAAACCTTATCTCCTTGAA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAACA-TAGCGAATCTTATCTCCCTGAA
* * * *
10947107 GTTACA-TAGAGTAGGTTGAA---A
65 GTTGCAGTGGAGCAGATTGAAGCCA
* * * * *
10947128 CAAATATCATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGATA-CGAATCTTATTTCCCTGAAG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAACATAGCGAATCTTATCTCCCTGAAG
*
10947192 TTGCAATGGA
66 TTGCAGTGGA
10947202 ATAGATTGTA
Statistics
Matches: 273, Mismatches: 56, Indels: 16
0.79 0.16 0.05
Matches are distributed among these distances:
84 53 0.19
85 6 0.02
87 13 0.05
88 89 0.33
89 112 0.41
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (89 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAACATAGCGAATCTTATCTCCCTGAAG
TTGCAGTGGAGCAGATTGAAGCCA
Found at i:10947208 original size:128 final size:130
Alignment explanation
Indices: 10946784--10947201 Score: 398
Period size: 133 Copynumber: 3.2 Consensus size: 130
10946774 ATGGCAAATA
* * * * * * *
10946784 TTATCTCTCTGAAGTTGCAGTGGAGCAGATT-GAA-CATAGTGAATCTAATCTCCCTGAAGTTGC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACA---AAACTTATCTCCCTAAAGTTAC
** * * *
10946847 AGTGGAGCAGGTTGAAGTTACAAATCGT-ATCTCCCTGAAGTTGCAGTGGAGCAGATTGAACATA
63 AGTAAAGTAGGTTGAAG--ACAAAT-ATCATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATA
10946911 -GTAAATC
125 CG--AATC
* * * *
10946918 TAATCTCCCTGAAGTTGTAGTGGAGCAGATTAACACCACAAAACTTATCTCCCTAAAGTTGCAGT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAAAACTTATCTCCCTAAAGTTACAGT
* * * * * * ** *
10946983 AAAGTAGGTTGAAGTGGCGAATCTTATCTCCCTAAAGTTACAGTGGAGCAGATTGAAGCCACTAA
66 AAAGTAGGTTGAA--GACAAATATCATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACGAA
10947048 TC
129 TC
* * * * *
10947050 TTATCTCCCTAAAGTTGCGGTGGAGCAGATTAAAACCACAAACCTTATCTCCTTGAAGTTACA-T
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAAAACTTATCTCCCTAAAGTTACAGT
* *
10947114 AGAGTAGGTTGAA-ACAAATATCATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAGATACGAATC
66 AAAGTAGGTTGAAGACAAATATCATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACGAATC
* *
10947178 TTATTTCCCTGAAGTTGCAATGGA
1 TTATCTCCCTGAAGTTGCAGTGGA
10947202 ATAGATTGTA
Statistics
Matches: 233, Mismatches: 45, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
128 61 0.26
131 13 0.06
132 59 0.25
133 67 0.29
134 28 0.12
135 2 0.01
136 3 0.01
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (130 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAAAACTTATCTCCCTAAAGTTACAGT
AAAGTAGGTTGAAGACAAATATCATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATACGAATC
Found at i:10949850 original size:33 final size:33
Alignment explanation
Indices: 10949808--10949885 Score: 138
Period size: 33 Copynumber: 2.3 Consensus size: 33
10949798 ACAAAAACTA
10949808 CATATTCATTTAATATAATAATTTAGCATGAAC
1 CATATTCATTTAATATAATAATTTAGCATGAAC
10949841 CATATTCATTTAATATAATAATTTAGCATGAAC
1 CATATTCATTTAATATAATAATTTAGCATGAAC
*
10949874 CAATATTGATTT
1 C-ATATTCATTT
10949886 TTTCTTGGTC
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
33 34 0.79
34 9 0.21
ACGTcount: A:0.41, C:0.12, G:0.06, T:0.41
Consensus pattern (33 bp):
CATATTCATTTAATATAATAATTTAGCATGAAC
Found at i:10952893 original size:229 final size:229
Alignment explanation
Indices: 10952492--10952931 Score: 844
Period size: 229 Copynumber: 1.9 Consensus size: 229
10952482 TGGCAGCCTA
10952492 AATCCAAATAAATAAGGAACCAAAAGTTGGTACATTGGGTATACGACTTATACATTATGTAGCAT
1 AATCCAAATAAATAAGGAACCAAAAGTTGGTACATTGGGTATACGACTTATACATTATGTAGCAT
10952557 CATTCAAAATAGAGGAATTCATAGCCCAAGACATGCGTAAATGATATCTTCTCATTGGCATTACA
66 CATTCAAAATAGAGGAATTCATAGCCCAAGACATGCGTAAATGATATCTTCTCATTGGCATTACA
10952622 TGATAGATGAAAAGTAAACGTGGTCACGAGTTGCTTTTCTTTTTGATAAATGACTTAATTACTAT
131 TGATAGATGAAAAGTAAACGTGGTCACGAGTTGCTTTTCTTTTTGATAAATGACTTAATTACTAT
10952687 ATGATAGTAATTGACTGATGTAAGTAAAAGCCCG
196 ATGATAGTAATTGACTGATGTAAGTAAAAGCCCG
*
10952721 AATCCAAATAAATAAGGAACCAAAAGTTGGTACATTGGGTATCCGACTTATACATTATGTAGCAT
1 AATCCAAATAAATAAGGAACCAAAAGTTGGTACATTGGGTATACGACTTATACATTATGTAGCAT
*
10952786 CATTCACAATAGAGGAATTCATAGCCCAAGACATGCGTAAATGATATCTTCTCATTGGCATTACA
66 CATTCAAAATAGAGGAATTCATAGCCCAAGACATGCGTAAATGATATCTTCTCATTGGCATTACA
* *
10952851 TGATAGATGAAAAGTAAACGTGGTCATGAGTTGTTTTTCTTTTTGATAAATGACTTAATTACTAT
131 TGATAGATGAAAAGTAAACGTGGTCACGAGTTGCTTTTCTTTTTGATAAATGACTTAATTACTAT
10952916 ATGATAGTAATTGACT
196 ATGATAGTAATTGACT
10952932 TTTCATGAAG
Statistics
Matches: 207, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
229 207 1.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (229 bp):
AATCCAAATAAATAAGGAACCAAAAGTTGGTACATTGGGTATACGACTTATACATTATGTAGCAT
CATTCAAAATAGAGGAATTCATAGCCCAAGACATGCGTAAATGATATCTTCTCATTGGCATTACA
TGATAGATGAAAAGTAAACGTGGTCACGAGTTGCTTTTCTTTTTGATAAATGACTTAATTACTAT
ATGATAGTAATTGACTGATGTAAGTAAAAGCCCG
Found at i:10965012 original size:47 final size:45
Alignment explanation
Indices: 10964947--10965205 Score: 213
Period size: 47 Copynumber: 5.6 Consensus size: 45
10964937 ATTGTTGGCT
10964947 AGTGTAAGACATGTCTGGGACATGCATCGACCACATTATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACA-TATGATAGCC
* * * * *
10964993 AGTGTAAGACCATGTCTGGGACATGGCATC-AGCATTGAGATGAAAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGACCA--CATATGATAGCC
* * * * *
10965041 TGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-TAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGACCAC-ATATGAT-AGCC
* * **
10965087 AGTGTAAGACATGTCTGGGACATGCATC-AGCTACAAGATGATATTC
1 AGTGTAAGACATGTCTGGGACATGCATCGA-CCAC-ATATGATAGCC
* *
10965133 AGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGATATG--AGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGAC--CACATATGATAGCC
10965180 AGTGTAAGACCATGTCTGGGACATGC
1 AGTGTAAGA-CATGTCTGGGACATGC
10965206 TATCTGCACT
Statistics
Matches: 173, Mismatches: 26, Indels: 28
0.76 0.11 0.12
Matches are distributed among these distances:
46 67 0.39
47 73 0.42
48 26 0.15
49 6 0.03
50 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCACATATGATAGCC
Found at i:10965162 original size:94 final size:93
Alignment explanation
Indices: 10964946--10965205 Score: 300
Period size: 94 Copynumber: 2.8 Consensus size: 93
10964936 TATTGTTGGC
* * *
10964946 TAGTGTAAGACATGTCTGGGACATGCATCGACCAC-ATTATG-ATAGCCAGTGTAAGACCATGTC
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATGTA-AGCCAGTGTAAGACCATGTC
**
10965009 TGGGACATGGCATCAGCATTGAGATGAAAGCT
64 TGGGACAT-GCATCAGCATCAAGATGAAA-CT
*
10965041 T-GTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGCCAGTGTAAGA-CATGTCTG
1 TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCCAGTGTAAGACCATGTCTG
*
10965104 GGACATGCATCAGC-TACAAGATGATA-T
66 GGACATGCATCAGCAT-CAAGATGAAACT
* * * *
10965131 TCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGATATGAGCCAGTGTAAGACCATGT
1 T-AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGTAAGCCAGTGTAAGACCATGT
10965195 CTGGGACATGC
63 CTGGGACATGC
10965206 TATCTGCACT
Statistics
Matches: 145, Mismatches: 12, Indels: 17
0.83 0.07 0.10
Matches are distributed among these distances:
90 2 0.01
91 1 0.01
92 23 0.16
93 49 0.34
94 67 0.46
95 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (93 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAAGCCAGTGTAAGACCATGTCTG
GGACATGCATCAGCATCAAGATGAAACT
Found at i:10965199 original size:140 final size:140
Alignment explanation
Indices: 10964947--10965205 Score: 382
Period size: 140 Copynumber: 1.9 Consensus size: 140
10964937 ATTGTTGGCT
**
10964947 AGTGTAAGACATGTCTGGGACATGCATCGACCACATTATGATAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCGACCACAAGATGATAGCCAGTGTAAGACCATGTCTGG
**
10965012 GACATGGCATCAGCATTGAGATGAAAGCTTGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA
66 GACATGGCATCAGCATTGAGATGAAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA
10965077 GACGTAAGCC
131 GACGTAAGCC
* **
10965087 AGTGTAAGACATGTCTGGGACATGCATC-AGCTACAAGATGATATTCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGA-CCACAAGATGATAGCCAGTGTAAGACCATGTCTG
*
10965151 GGACATGGCATC-G-ACTTGAGAT-ATGAGCCAGTGTAAGACCATGTCTGGGACATGC
65 GGACATGGCATCAGCA-TTGAGATGA-AAGCCAGTGTAAGA-CATGTCTGGGACATGC
10965206 TATCTGCACT
Statistics
Matches: 107, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
138 2 0.02
139 20 0.19
140 85 0.79
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACCACAAGATGATAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCAGCATTGAGATGAAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA
GACGTAAGCC
Found at i:10966344 original size:20 final size:21
Alignment explanation
Indices: 10966306--10966344 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
10966296 TTGAGTTGGT
10966306 CACAAGGGCGTGTTGCCCTTC
1 CACAAGGGCGTGTTGCCCTTC
*
10966327 CACATGGGCGTG-TGCCCT
1 CACAAGGGCGTGTTGCCCT
10966345 GTTTTAAGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.13, C:0.33, G:0.31, T:0.23
Consensus pattern (21 bp):
CACAAGGGCGTGTTGCCCTTC
Found at i:10975140 original size:15 final size:15
Alignment explanation
Indices: 10975120--10975149 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
10975110 CTTTAATTTT
10975120 TTTATTTATTTTTAA
1 TTTATTTATTTTTAA
*
10975135 TTTATTTTTTTTTAA
1 TTTATTTATTTTTAA
10975150 AAGCAAACCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTATTTATTTTTAA
Found at i:10983027 original size:28 final size:27
Alignment explanation
Indices: 10982975--10983030 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 27
10982965 TTTAATAAAG
* *
10982975 AATGGAAATTTTAAATATATGAAATAA
1 AATGGAAATTTTAAATAAATAAAATAA
10983002 AATGGAAAATTTTTAAA-AAATAAAATAA
1 AATGG-AAA-TTTTAAATAAATAAAATAA
10983030 A
1 A
10983031 CTTGAGTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
27 5 0.20
28 13 0.52
29 7 0.28
ACGTcount: A:0.61, C:0.00, G:0.09, T:0.30
Consensus pattern (27 bp):
AATGGAAATTTTAAATAAATAAAATAA
Found at i:11006343 original size:10 final size:10
Alignment explanation
Indices: 11006328--11006352 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
11006318 TGATATCTTT
11006328 TTTTAAAATA
1 TTTTAAAATA
11006338 TTTTAAAATA
1 TTTTAAAATA
11006348 TTTTA
1 TTTTA
11006353 CTATACTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
TTTTAAAATA
Found at i:11011155 original size:10 final size:10
Alignment explanation
Indices: 11011128--11011170 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
11011118 TTAAATTCTA
11011128 AAAGATAAAT
1 AAAGATAAAT
11011138 ACAA-ATAAAT
1 A-AAGATAAAT
*
11011148 AAAGATAATT
1 AAAGATAAAT
*
11011158 AAAGATAATT
1 AAAGATAAAT
11011168 AAA
1 AAA
11011171 AATGAAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
9 2 0.07
10 26 0.87
11 2 0.07
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.23
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:11013136 original size:12 final size:13
Alignment explanation
Indices: 11013119--11013183 Score: 75
Period size: 12 Copynumber: 5.2 Consensus size: 13
11013109 AGCATCCAAA
11013119 AAATAA-AATAAT
1 AAATAATAATAAT
11013131 AAATAATAA-AAT
1 AAATAATAATAAT
* *
11013143 AAA-AATAAAAAG
1 AAATAATAATAAT
11013155 AAATAATAATAAT
1 AAATAATAATAAT
11013168 -AATAATAATAAAT
1 AAATAATAAT-AAT
11013181 AAA
1 AAA
11013184 AATTGGGTTG
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
11 5 0.11
12 26 0.58
13 12 0.27
14 2 0.04
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (13 bp):
AAATAATAATAAT
Found at i:11013138 original size:3 final size:3
Alignment explanation
Indices: 11013120--11013178 Score: 59
Period size: 3 Copynumber: 19.7 Consensus size: 3
11013110 GCATCCAAAA
* * *
11013120 AAT AA- AAT AAT AAAT AAT AA- AAT AAA AAT AAA AAGA AAT AAT AAT
1 AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AA-T AAT AAT AAT
11013165 AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AA
11013179 ATAAAAATTG
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
2 4 0.08
3 38 0.79
4 6 0.12
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.24
Consensus pattern (3 bp):
AAT
Found at i:11013149 original size:6 final size:6
Alignment explanation
Indices: 11013117--11013186 Score: 61
Period size: 6 Copynumber: 11.0 Consensus size: 6
11013107 TTAGCATCCA
* *
11013117 AAAAAT -AAAAT AATAAAT AATAAAAT AAAAAT AAAAAG AAATAAT AATAAT
1 AAAAAT AAAAAT AA-AAAT -A-AAAAT AAAAAT AAAAAT AAA-AAT AAAAAT
*
11013168 AATAAT AATAAAT AAAAAT
1 AAAAAT AA-AAAT AAAAAT
11013187 TGGGTTGCCT
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
5 5 0.09
6 29 0.54
7 14 0.26
8 5 0.09
9 1 0.02
ACGTcount: A:0.76, C:0.00, G:0.01, T:0.23
Consensus pattern (6 bp):
AAAAAT
Found at i:11016933 original size:10 final size:10
Alignment explanation
Indices: 11016906--11016965 Score: 52
Period size: 10 Copynumber: 6.0 Consensus size: 10
11016896 TTAAATTCTA
11016906 AAAGATAAAT
1 AAAGATAAAT
11016916 ACAA-ATAAAT
1 A-AAGATAAAT
*
11016926 AAAGATAATT
1 AAAGATAAAT
* *
11016936 AAAGTTAATT
1 AAAGATAAAT
*
11016946 AAAGGTAAAT
1 AAAGATAAAT
11016956 GAAA-ATAAAT
1 -AAAGATAAAT
11016966 CCTAAAATTA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
9 2 0.05
10 35 0.83
11 5 0.12
ACGTcount: A:0.63, C:0.02, G:0.10, T:0.25
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:11017978 original size:42 final size:42
Alignment explanation
Indices: 11017919--11018003 Score: 170
Period size: 42 Copynumber: 2.0 Consensus size: 42
11017909 GGGCTACGTC
11017919 AAGGGGATCCTTTAAGCCCTTACTTATTTCTGTTCTGTGGAG
1 AAGGGGATCCTTTAAGCCCTTACTTATTTCTGTTCTGTGGAG
11017961 AAGGGGATCCTTTAAGCCCTTACTTATTTCTGTTCTGTGGAG
1 AAGGGGATCCTTTAAGCCCTTACTTATTTCTGTTCTGTGGAG
11018003 A
1 A
11018004 GGGTTTATCT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.38
Consensus pattern (42 bp):
AAGGGGATCCTTTAAGCCCTTACTTATTTCTGTTCTGTGGAG
Found at i:11020034 original size:16 final size:16
Alignment explanation
Indices: 11020013--11020052 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
11020003 TCATAGCTAA
11020013 AGAGAGACTCCAAAAG
1 AGAGAGACTCCAAAAG
* *
11020029 AGAGAGATTCTAAAAG
1 AGAGAGACTCCAAAAG
11020045 AGAGAGAC
1 AGAGAGAC
11020053 AACTTATTTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.50, C:0.12, G:0.28, T:0.10
Consensus pattern (16 bp):
AGAGAGACTCCAAAAG
Found at i:11022148 original size:25 final size:23
Alignment explanation
Indices: 11022104--11022149 Score: 56
Period size: 25 Copynumber: 1.9 Consensus size: 23
11022094 GGTAGCAAAT
*
11022104 AAAAAAAATTCAAGTACTAATTA
1 AAAAAAAATTCAAATACTAATTA
*
11022127 AAAAAAAAGTGTCAAATTCTAAT
1 AAAAAAAA-T-TCAAATACTAAT
11022150 GCTAATGGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 8 0.42
24 1 0.05
25 10 0.53
ACGTcount: A:0.59, C:0.09, G:0.07, T:0.26
Consensus pattern (23 bp):
AAAAAAAATTCAAATACTAATTA
Found at i:11022881 original size:29 final size:29
Alignment explanation
Indices: 11022839--11022897 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
11022829 AAAAAAGGAA
11022839 AACATAATTTCTCTTTTTAAATGTTGAGC
1 AACATAATTTCTCTTTTTAAATGTTGAGC
11022868 AACATAATTTCTCTTTTTAAATGTTGAGC
1 AACATAATTTCTCTTTTTAAATGTTGAGC
11022897 A
1 A
11022898 TGCTTTATCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.32, C:0.14, G:0.10, T:0.44
Consensus pattern (29 bp):
AACATAATTTCTCTTTTTAAATGTTGAGC
Done.