Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 45 of 295
Found at i:12922702 original size:52 final size:52
Alignment explanation
Indices: 12922620--12922758 Score: 149
Period size: 52 Copynumber: 2.6 Consensus size: 52
12922610 TTTTGTGCGC
* * *
12922620 CCGTATAAGACCATAGCAGGGCTATGGCATCGGTG-CAATGTTAT-ACATG-TT
1 CCGTATAAGACCATAGCTGGGATAT-GCATCGGTGTC-ATGTGATAACATGATT
* *
12922671 CCTGTATAAGACCATAGCTGGGTTATAGCATCGGTGTCATGTGATAATATGATT
1 CC-GTATAAGACCATAGCTGGGATAT-GCATCGGTGTCATGTGATAACATGATT
* *
12922725 CCGTATAATACCATATCTGGGATATGACATCGGT
1 CCGTATAAGACCATAGCTGGGATATG-CATCGGT
12922759 ATAATATGTG
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
51 2 0.03
52 37 0.49
53 32 0.43
54 4 0.05
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (52 bp):
CCGTATAAGACCATAGCTGGGATATGCATCGGTGTCATGTGATAACATGATT
Found at i:12924078 original size:23 final size:23
Alignment explanation
Indices: 12924045--12924088 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
12924035 TATTTTGTTC
*
12924045 TTTTTCTTTCT-TTCTTCTGCCAT
1 TTTTTCCTTCTGTTCTT-TGCCAT
12924068 TTTTTCCTTCTGTTCTTTGCC
1 TTTTTCCTTCTGTTCTTTGCC
12924089 TTCTTCTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.02, C:0.27, G:0.07, T:0.64
Consensus pattern (23 bp):
TTTTTCCTTCTGTTCTTTGCCAT
Found at i:12936881 original size:19 final size:20
Alignment explanation
Indices: 12936836--12936881 Score: 51
Period size: 18 Copynumber: 2.4 Consensus size: 20
12936826 TCCATACAAG
12936836 TACTTAAATGGTTAAATTTGA
1 TACTT-AATGGTTAAATTTGA
* *
12936857 T-TTTAAT-GTTCAATTTGA
1 TACTTAATGGTTAAATTTGA
12936875 TACTTAA
1 TACTTAA
12936882 GAGTTTCTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 4
0.75 0.11 0.14
Matches are distributed among these distances:
18 11 0.52
19 7 0.33
20 2 0.10
21 1 0.05
ACGTcount: A:0.35, C:0.07, G:0.11, T:0.48
Consensus pattern (20 bp):
TACTTAATGGTTAAATTTGA
Found at i:12937051 original size:19 final size:18
Alignment explanation
Indices: 12937005--12937055 Score: 61
Period size: 19 Copynumber: 2.9 Consensus size: 18
12936995 AACCAAACTT
*
12937005 AAATATCAA-ATTAAAAC
1 AAATATAAATATTAAAAC
*
12937022 AAA-AAAAATATTAAAACC
1 AAATATAAATATTAAAA-C
12937040 AAATATAAATATTAAA
1 AAATATAAATATTAAA
12937056 TAATATATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
16 3 0.11
17 10 0.36
18 4 0.14
19 11 0.39
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.24
Consensus pattern (18 bp):
AAATATAAATATTAAAAC
Found at i:12938932 original size:10 final size:10
Alignment explanation
Indices: 12938917--12938944 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
12938907 AAATCAAAAG
12938917 AGAAAGAAGA
1 AGAAAGAAGA
12938927 AGAAAGAAGA
1 AGAAAGAAGA
12938937 AGAAAGAA
1 AGAAAGAA
12938945 ATTGAGAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (10 bp):
AGAAAGAAGA
Found at i:12939298 original size:22 final size:22
Alignment explanation
Indices: 12939270--12939325 Score: 103
Period size: 22 Copynumber: 2.5 Consensus size: 22
12939260 GAACAGTATC
*
12939270 ACACGCCTGTGTGGCCTAGGAG
1 ACACGCCCGTGTGGCCTAGGAG
12939292 ACACGCCCGTGTGGCCTAGGAG
1 ACACGCCCGTGTGGCCTAGGAG
12939314 ACACGCCCGTGT
1 ACACGCCCGTGT
12939326 CTCCATGACA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.18, C:0.32, G:0.34, T:0.16
Consensus pattern (22 bp):
ACACGCCCGTGTGGCCTAGGAG
Found at i:12942309 original size:19 final size:18
Alignment explanation
Indices: 12942273--12942317 Score: 63
Period size: 19 Copynumber: 2.4 Consensus size: 18
12942263 GAAATGGCAA
*
12942273 AGATGAGAATTGAATATG
1 AGATGAGAAATGAATATG
12942291 AGATGAGAAATGAAATATG
1 AGATGAGAAATG-AATATG
*
12942310 AAATGAGA
1 AGATGAGA
12942318 TGTGAAACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 11 0.46
19 13 0.54
ACGTcount: A:0.51, C:0.00, G:0.27, T:0.22
Consensus pattern (18 bp):
AGATGAGAAATGAATATG
Found at i:12944748 original size:35 final size:35
Alignment explanation
Indices: 12944697--12944878 Score: 242
Period size: 35 Copynumber: 5.2 Consensus size: 35
12944687 AGTGCCATGA
* * *
12944697 TTCACAACTCAATATGGTTAATACCATACCTACGT
1 TTCATAACTCAGTATGGATAATACCATACCTACGT
*
12944732 TTCACAACTCAGTATGGGA-AATACCATACCTACGT
1 TTCATAACTCAGTAT-GGATAATACCATACCTACGT
* *
12944767 TTTATAGCTCAGTATGGATAATACCATACCTACGT
1 TTCATAACTCAGTATGGATAATACCATACCTACGT
* *
12944802 ATCATAACTCAGTATGGAAAATACCATACCTACGT
1 TTCATAACTCAGTATGGATAATACCATACCTACGT
*
12944837 ATT-ATAGCTCAGTATGGATAATACCATACCTACGT
1 -TTCATAACTCAGTATGGATAATACCATACCTACGT
*
12944872 ATCATAA
1 TTCATAA
12944879 GTTTTCCATA
Statistics
Matches: 129, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
34 4 0.03
35 122 0.95
36 3 0.02
ACGTcount: A:0.36, C:0.23, G:0.12, T:0.30
Consensus pattern (35 bp):
TTCATAACTCAGTATGGATAATACCATACCTACGT
Found at i:12944824 original size:70 final size:70
Alignment explanation
Indices: 12944704--12944878 Score: 296
Period size: 70 Copynumber: 2.5 Consensus size: 70
12944694 TGATTCACAA
* * * * * *
12944704 CTCAATATGGTTAATACCATACCTACGTTTCACAACTCAGTATGGGAAATACCATACCTACGTTT
1 CTCAGTATGGATAATACCATACCTACGTATCATAACTCAGTATGGAAAATACCATACCTACGTAT
12944769 TATAG
66 TATAG
12944774 CTCAGTATGGATAATACCATACCTACGTATCATAACTCAGTATGGAAAATACCATACCTACGTAT
1 CTCAGTATGGATAATACCATACCTACGTATCATAACTCAGTATGGAAAATACCATACCTACGTAT
12944839 TATAG
66 TATAG
12944844 CTCAGTATGGATAATACCATACCTACGTATCATAA
1 CTCAGTATGGATAATACCATACCTACGTATCATAA
12944879 GTTTTCCATA
Statistics
Matches: 99, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 99 1.00
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.30
Consensus pattern (70 bp):
CTCAGTATGGATAATACCATACCTACGTATCATAACTCAGTATGGAAAATACCATACCTACGTAT
TATAG
Found at i:12949153 original size:10 final size:10
Alignment explanation
Indices: 12949137--12949195 Score: 59
Period size: 10 Copynumber: 5.8 Consensus size: 10
12949127 TAATATATAC
12949137 TTTTATTTAT
1 TTTTATTTAT
*
12949147 ATTTATTTAT
1 TTTTATTTAT
12949157 TTATTATTTAT
1 TT-TTATTTAT
12949168 TTTTA--TAT
1 TTTTATTTAT
12949176 TTTATATTTTAT
1 TTT-TA-TTTAT
*
12949188 TATTATTT
1 TTTTATTT
12949196 TTCCAAATGT
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
8 6 0.15
9 2 0.05
10 16 0.39
11 12 0.29
12 5 0.12
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (10 bp):
TTTTATTTAT
Found at i:12949165 original size:7 final size:7
Alignment explanation
Indices: 12949139--12949191 Score: 51
Period size: 6 Copynumber: 7.7 Consensus size: 7
12949129 ATATATACTT
12949139 TTATTTA
1 TTATTTA
12949146 -TATTTA
1 TTATTTA
12949152 TTTATTTA
1 -TTATTTA
12949160 TTATTTA
1 TTATTTA
12949167 TT-TTTA
1 TTATTTA
12949173 -TATTT-
1 TTATTTA
12949178 TATATTTTA
1 T-TA-TTTA
12949187 TTATT
1 TTATT
12949192 ATTTTTCCAA
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
5 1 0.03
6 13 0.33
7 13 0.33
8 11 0.28
9 1 0.03
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (7 bp):
TTATTTA
Found at i:12949166 original size:15 final size:14
Alignment explanation
Indices: 12949142--12949195 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 14
12949132 TATACTTTTA
12949142 TTTA-TATTTATTT
1 TTTATTATTTATTT
12949155 ATTTATTATTTATTT
1 -TTTATTATTTATTT
12949170 TTATATT-TTATATTT
1 TT-TATTATT-TATTT
12949185 TATTATTATTT
1 T-TTATTATTT
12949196 TTCCAAATGT
Statistics
Matches: 35, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
14 8 0.23
15 24 0.69
16 3 0.09
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (14 bp):
TTTATTATTTATTT
Found at i:12949175 original size:27 final size:26
Alignment explanation
Indices: 12949142--12949197 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 26
12949132 TATACTTTTA
*
12949142 TTTATA-TTTATTTATTTATTATTTATT
1 TTTATATTTTATAT-TTTATTA-TTATT
12949169 TTTATATTTTATATTTTATTATTATT
1 TTTATATTTTATATTTTATTATTATT
12949195 TTT
1 TTT
12949198 CCAAATGTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 8 0.30
27 13 0.48
28 6 0.22
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (26 bp):
TTTATATTTTATATTTTATTATTATT
Found at i:12950062 original size:26 final size:27
Alignment explanation
Indices: 12950017--12950068 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
12950007 TTAATTCTAA
* * *
12950017 AATTAAACTACAATTCAAAATTAAATT
1 AATTAAACTACAAATAAAAAATAAATT
12950044 AATTAAA-TACAAATAAAAAATAAAT
1 AATTAAACTACAAATAAAAAATAAAT
12950069 GTGGGTTGCC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 15 0.68
27 7 0.32
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (27 bp):
AATTAAACTACAAATAAAAAATAAATT
Found at i:12953899 original size:13 final size:13
Alignment explanation
Indices: 12953881--12953923 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
12953871 TAGATTTTTC
12953881 CTAAATATTATCA
1 CTAAATATTATCA
12953894 CTAAATA--ATC-
1 CTAAATATTATCA
12953904 CTAAATATTATCA
1 CTAAATATTATCA
12953917 CTAAATA
1 CTAAATA
12953924 ATTTAAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 7 0.26
11 3 0.11
12 3 0.11
13 14 0.52
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.35
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:12953932 original size:23 final size:23
Alignment explanation
Indices: 12953879--12953925 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
12953869 GTTAGATTTT
12953879 TCCTAAATATTATCACTAAATAA
1 TCCTAAATATTATCACTAAATAA
12953902 TCCTAAATATTATCACTAAATAA
1 TCCTAAATATTATCACTAAATAA
12953925 T
1 T
12953926 TTAAAATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (23 bp):
TCCTAAATATTATCACTAAATAA
Found at i:12954410 original size:22 final size:23
Alignment explanation
Indices: 12954356--12954408 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
12954346 TCACAAAGAA
12954356 TAAACTAAACAAACAAAAAAAAT
1 TAAACTAAACAAACAAAAAAAAT
* * *
12954379 TCAA-TAAACAAACCAACAAAAT
1 TAAACTAAACAAACAAAAAAAAT
12954401 TAAACTAA
1 TAAACTAA
12954409 CATTAGTTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
22 19 0.76
23 6 0.24
ACGTcount: A:0.68, C:0.17, G:0.00, T:0.15
Consensus pattern (23 bp):
TAAACTAAACAAACAAAAAAAAT
Found at i:12957771 original size:3 final size:3
Alignment explanation
Indices: 12957763--12957792 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
12957753 CCTGACGGCA
*
12957763 ATG ATG ATG GTG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
12957793 TTGCTGCTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.30, C:0.00, G:0.37, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:12957824 original size:3 final size:3
Alignment explanation
Indices: 12957818--12957843 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
12957808 CTGCTGATGT
12957818 TGG TGG TGG TGG TGG TGG TGG TGG TG
1 TGG TGG TGG TGG TGG TGG TGG TGG TG
12957844 ACGATGACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.65, T:0.35
Consensus pattern (3 bp):
TGG
Found at i:12969814 original size:5 final size:5
Alignment explanation
Indices: 12969804--12969828 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
12969794 CCGCCACAAC
12969804 CCCCT CCCCT CCCCT CCCCT CCCCT
1 CCCCT CCCCT CCCCT CCCCT CCCCT
12969829 TAAAGTAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.80, G:0.00, T:0.20
Consensus pattern (5 bp):
CCCCT
Found at i:12990061 original size:7 final size:8
Alignment explanation
Indices: 12990028--12990063 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
12990018 TGAGTACTTC
*
12990028 TGATCAAG
1 TGATAAAG
12990036 TGATAAAG
1 TGATAAAG
12990044 TGATAAAG
1 TGATAAAG
12990052 TGAT-AAG
1 TGATAAAG
12990059 TGATA
1 TGATA
12990064 GCTTCGGCTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
7 7 0.27
8 19 0.73
ACGTcount: A:0.44, C:0.03, G:0.25, T:0.28
Consensus pattern (8 bp):
TGATAAAG
Found at i:12990108 original size:46 final size:46
Alignment explanation
Indices: 12990036--12990302 Score: 336
Period size: 46 Copynumber: 5.5 Consensus size: 46
12990026 TCTGATCAAG
* * *
12990036 TGATAAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATC
1 TGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATC
*
12990082 TGATCAAGTGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATC
1 TGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATC
12990128 TGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATC
1 TGATCAAGTGAC------AAAGTGATAAGTGATAGCTTCGGCTACACTTATC
*
12990180 TGATCAAGTGACAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTATC
1 TGATCAAGTGAC------AAAGTGATAAGTGATAGCTTCGGCTACACTTATC
* **
12990232 TGATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATC
1 TGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATC
**
12990278 TGATCAAGAAACAAAGTGATAAGTG
1 TGATCAAGTGACAAAGTGATAAGTG
12990303 GCTACACTTA
Statistics
Matches: 203, Mismatches: 12, Indels: 12
0.89 0.05 0.05
Matches are distributed among these distances:
46 109 0.54
52 94 0.46
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (46 bp):
TGATCAAGTGACAAAGTGATAAGTGATAGCTTCGGCTACACTTATC
Found at i:12990159 original size:52 final size:51
Alignment explanation
Indices: 12990094--12990285 Score: 286
Period size: 52 Copynumber: 3.8 Consensus size: 51
12990084 ATCAAGTGAC
12990094 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTGG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGT-G
*
12990146 AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGACAAGTG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
* * *
12990197 AAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC-----
1 -AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
*
12990244 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAG
1 AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAG
12990286 AAACAAAGTG
Statistics
Matches: 133, Mismatches: 6, Indels: 8
0.90 0.04 0.05
Matches are distributed among these distances:
46 39 0.29
51 1 0.01
52 93 0.70
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.28
Consensus pattern (51 bp):
AAAGTGATAAGTGATAGCTTCAGCTACACTTATCTGATCAAGTGACAAGTG
Found at i:12990165 original size:98 final size:97
Alignment explanation
Indices: 12990026--12990302 Score: 348
Period size: 98 Copynumber: 2.8 Consensus size: 97
12990016 TTTGAGTACT
* *
12990026 TCTGATCAAGTGATAAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGT
1 TCTGATCAAGTGA-CAAGTG--AAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGT
12990091 GACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
63 GACAAAGTGATAAGTGATAGCTTCAGCTACACTTA
12990126 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
1 TCTGATCAAGTGACAAGT-GAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGA
* *
12990191 CAAGTGAAAAGTGATAAGTGATAGCTTCGGCTATACTTA
65 C------AAAGTGATAAGTGATAGCTTCAGCTACACTTA
* ** **
12990230 TCTGATCAAGAGAC-----AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAAAC
1 TCTGATCAAGTGACAAGTGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
12990290 AAAGTGATAAGTG
66 AAAGTGATAAGTG
12990303 GCTACACTTA
Statistics
Matches: 161, Mismatches: 9, Indels: 22
0.84 0.05 0.11
Matches are distributed among these distances:
92 13 0.08
98 87 0.54
99 4 0.02
100 14 0.09
104 43 0.27
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (97 bp):
TCTGATCAAGTGACAAGTGAAAGTGATAAGTGATAGCTTCGGCTACACTTATCTGATCAAGTGAC
AAAGTGATAAGTGATAGCTTCAGCTACACTTA
Found at i:12990310 original size:37 final size:37
Alignment explanation
Indices: 12990266--12990374 Score: 168
Period size: 37 Copynumber: 3.0 Consensus size: 37
12990256 GATAGCTTTA
12990266 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
* *
12990303 GCTACACTTATGTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
12990340 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
12990375 ATCATACGTA
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
35 11 0.17
36 4 0.06
37 51 0.77
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:12993080 original size:34 final size:34
Alignment explanation
Indices: 12993034--12993109 Score: 111
Period size: 34 Copynumber: 2.3 Consensus size: 34
12993024 TAGTTAGAAT
12993034 TCTAGAC--TAAGAGTTTTGAAAATTTTGGACTC
1 TCTAGACTTTAAGAGTTTTGAAAATTTTGGACTC
* *
12993066 TTTAGACTTTAAGAGTTTTGTAAATTTTGGACTC
1 TCTAGACTTTAAGAGTTTTGAAAATTTTGGACTC
*
12993100 TCTGGACTTT
1 TCTAGACTTT
12993110 TGTGTTTTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
32 6 0.16
34 32 0.84
ACGTcount: A:0.26, C:0.12, G:0.18, T:0.43
Consensus pattern (34 bp):
TCTAGACTTTAAGAGTTTTGAAAATTTTGGACTC
Found at i:12995353 original size:61 final size:61
Alignment explanation
Indices: 12995277--12995400 Score: 221
Period size: 61 Copynumber: 2.0 Consensus size: 61
12995267 GTGGAGTATC
*
12995277 GAGTCAGTTCAGACTGTGCTACTAAGAGAGTGATTCTGATATTTGAGTATGATGTGGAGGT
1 GAGTCAGTTCAGACTGTGCTACTAAGAGAGTGATTCTGATATTTGAGGATGATGTGGAGGT
**
12995338 GAGTCAGTTTGGACTGTGCTACTAAGAGAGTGATTCTGATATTTGAGGATGATGTGGAGGT
1 GAGTCAGTTCAGACTGTGCTACTAAGAGAGTGATTCTGATATTTGAGGATGATGTGGAGGT
12995399 GA
1 GA
12995401 TTGTGATCGG
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.26, C:0.09, G:0.33, T:0.32
Consensus pattern (61 bp):
GAGTCAGTTCAGACTGTGCTACTAAGAGAGTGATTCTGATATTTGAGGATGATGTGGAGGT
Found at i:13000027 original size:18 final size:18
Alignment explanation
Indices: 13000000--13000035 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
12999990 TCTCTAGAAT
* *
13000000 TTTGGGTTTTATTTTGGA
1 TTTGGATTTTAATTTGGA
13000018 TTTGGATTTTAATTTGGA
1 TTTGGATTTTAATTTGGA
13000036 ATTTCTAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.00, G:0.25, T:0.58
Consensus pattern (18 bp):
TTTGGATTTTAATTTGGA
Found at i:13004038 original size:18 final size:17
Alignment explanation
Indices: 13004008--13004042 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
13003998 TTCGTTTTCC
13004008 CTTTTTATTTTTTTCTT
1 CTTTTTATTTTTTTCTT
*
13004025 CTTTTTTTTATTTTTCTT
1 CTTTTTATT-TTTTTCTT
13004043 TTCCTTACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.06, C:0.11, G:0.00, T:0.83
Consensus pattern (17 bp):
CTTTTTATTTTTTTCTT
Found at i:13004702 original size:10 final size:11
Alignment explanation
Indices: 13004681--13004718 Score: 51
Period size: 10 Copynumber: 3.4 Consensus size: 11
13004671 CCCTAAAACT
13004681 AAGAGATGAAG
1 AAGAGATGAAG
13004692 AAGAG-TGAAG
1 AAGAGATGAAG
13004702 AAGAAAGATGAAG
1 AAG--AGATGAAG
13004715 AAGA
1 AAGA
13004719 TAGAGGTAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
10 8 0.33
11 6 0.25
12 2 0.08
13 8 0.33
ACGTcount: A:0.58, C:0.00, G:0.34, T:0.08
Consensus pattern (11 bp):
AAGAGATGAAG
Found at i:13019428 original size:2 final size:2
Alignment explanation
Indices: 13019381--13019411 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
13019371 TGTATATATA
13019381 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
13019412 AAGTATGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (2 bp):
TG
Found at i:13030183 original size:13 final size:13
Alignment explanation
Indices: 13030165--13030194 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
13030155 TGACAAATGG
13030165 CCATTTGACATCA
1 CCATTTGACATCA
13030178 CCATTTGACATCA
1 CCATTTGACATCA
13030191 CCAT
1 CCAT
13030195 GGTCAATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.30, C:0.33, G:0.07, T:0.30
Consensus pattern (13 bp):
CCATTTGACATCA
Found at i:13032736 original size:11 final size:11
Alignment explanation
Indices: 13032709--13032748 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
13032699 ATTAACATTT
13032709 TTAATTTTA-A
1 TTAATTTTATA
13032719 TTAATTTTATA
1 TTAATTTTATA
* *
13032730 ATAATTTTTTA
1 TTAATTTTATA
13032741 TTAATTTT
1 TTAATTTT
13032749 GATCATTTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
10 9 0.35
11 17 0.65
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTAATTTTATA
Found at i:13035326 original size:15 final size:15
Alignment explanation
Indices: 13035306--13035338 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
13035296 ATGACTAAGT
13035306 TGAAATCTTTTGGCA
1 TGAAATCTTTTGGCA
*
13035321 TGAAATCTTTTGGTA
1 TGAAATCTTTTGGCA
13035336 TGA
1 TGA
13035339 TGATAATCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.42
Consensus pattern (15 bp):
TGAAATCTTTTGGCA
Found at i:13038220 original size:21 final size:20
Alignment explanation
Indices: 13038191--13038255 Score: 58
Period size: 21 Copynumber: 3.1 Consensus size: 20
13038181 TATTAACTCA
*
13038191 TATGAGTTTCCGTTTAACCCT
1 TATG-GTTTCCGTTCAACCCT
* * *
13038212 TATAGGTTTTCGTTCAGCTCT
1 TAT-GGTTTCCGTTCAACCCT
*
13038233 TATGAGCTTCCGTTCAACCCT
1 TATG-GTTTCCGTTCAACCCT
13038254 TA
1 TA
13038256 CGGGTTTCTG
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
20 1 0.03
21 32 0.94
22 1 0.03
ACGTcount: A:0.18, C:0.25, G:0.15, T:0.42
Consensus pattern (20 bp):
TATGGTTTCCGTTCAACCCT
Found at i:13040018 original size:45 final size:45
Alignment explanation
Indices: 13039954--13040043 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
13039944 AGAACTTTAG
13039954 TCTGGCAAACCGTGTGGTCTTAGGTGACTTCTTTGCTTCAAATTT
1 TCTGGCAAACCGTGTGGTCTTAGGTGACTTCTTTGCTTCAAATTT
**
13039999 TCTGGCAAATTGTGTGGTCTTAGGTGACTTCTTTGCTTCAAATTT
1 TCTGGCAAACCGTGTGGTCTTAGGTGACTTCTTTGCTTCAAATTT
13040044 GCCTAAGTCA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.42
Consensus pattern (45 bp):
TCTGGCAAACCGTGTGGTCTTAGGTGACTTCTTTGCTTCAAATTT
Found at i:13041215 original size:22 final size:23
Alignment explanation
Indices: 13041190--13041235 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
13041180 CAACCAAATC
13041190 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
13041212 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
13041235 A
1 A
13041236 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:13041241 original size:23 final size:23
Alignment explanation
Indices: 13041197--13041241 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
13041187 ATCAATTCAA
*
13041197 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
13041220 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
13041242 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:13046775 original size:62 final size:62
Alignment explanation
Indices: 13046673--13046827 Score: 247
Period size: 62 Copynumber: 2.5 Consensus size: 62
13046663 ACCCTAATTC
* * *
13046673 GGATTACCCGTCCGGGTTAAATCCATTTTACACATATTCTTCGGGAGGGCTATATCAGGATA
1 GGATCACCCGTCCGAGCTAAATCCATTTTACACATATTCTTCGGGAGGGCTATATCAGGATA
*
13046735 GGATCACCCGTTCGAGCTAAATCCATTTTACACATATTCTTCGGGAGGGCTATATCAGGATA
1 GGATCACCCGTCCGAGCTAAATCCATTTTACACATATTCTTCGGGAGGGCTATATCAGGATA
* * *
13046797 GGATCACCCGTCCGGGCTAGATCCTTTTTAC
1 GGATCACCCGTCCGAGCTAAATCCATTTTAC
13046828 CGTCAATTCC
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 85 1.00
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.30
Consensus pattern (62 bp):
GGATCACCCGTCCGAGCTAAATCCATTTTACACATATTCTTCGGGAGGGCTATATCAGGATA
Found at i:13049795 original size:16 final size:16
Alignment explanation
Indices: 13049776--13049813 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
13049766 GGAAATTTAT
13049776 TTTATAAA-AAATTAAA
1 TTTATAAAGAAA-TAAA
13049792 TTTATAAAGAAATAAA
1 TTTATAAAGAAATAAA
13049808 TTTATA
1 TTTATA
13049814 TAATTAATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 18 0.86
17 3 0.14
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
TTTATAAAGAAATAAA
Found at i:13050798 original size:22 final size:21
Alignment explanation
Indices: 13050773--13050819 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
13050763 AACATAATAG
*
13050773 CAAAATGACAACAAAACAACAT
1 CAAAATGACAAC-AAACAACAA
*
13050795 CAAAATGGCAACAAACAACAA
1 CAAAATGACAACAAACAACAA
13050816 CAAA
1 CAAA
13050820 CAACAGTGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.64, C:0.23, G:0.06, T:0.06
Consensus pattern (21 bp):
CAAAATGACAACAAACAACAA
Found at i:13063762 original size:11 final size:11
Alignment explanation
Indices: 13063746--13063770 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
13063736 CCTTTCTCTC
13063746 TCTCATTACCA
1 TCTCATTACCA
13063757 TCTCATTACCA
1 TCTCATTACCA
13063768 TCT
1 TCT
13063771 TTTATCATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.36, G:0.00, T:0.40
Consensus pattern (11 bp):
TCTCATTACCA
Found at i:13065156 original size:17 final size:16
Alignment explanation
Indices: 13065115--13065156 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
13065105 AAATATATCA
13065115 TTTAAAA-ATAATTTT
1 TTTAAAATATAATTTT
**
13065130 TTTATGATATGAATTTT
1 TTTAAAATAT-AATTTT
13065147 TTTAAAATAT
1 TTTAAAATAT
13065157 TACACAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
15 5 0.24
16 2 0.10
17 14 0.67
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (16 bp):
TTTAAAATATAATTTT
Found at i:13071733 original size:15 final size:15
Alignment explanation
Indices: 13071705--13071737 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
13071695 TTATAATTTA
13071705 AAACATAAAAAAAAG
1 AAACATAAAAAAAAG
13071720 AAACA-AAAAGAAAAG
1 AAACATAAAA-AAAAG
13071735 AAA
1 AAA
13071738 GAACAGAAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.82, C:0.06, G:0.09, T:0.03
Consensus pattern (15 bp):
AAACATAAAAAAAAG
Found at i:13073988 original size:19 final size:20
Alignment explanation
Indices: 13073959--13073997 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
13073949 AAAGGGATAT
13073959 TATGATTAAATTATAATGTG
1 TATGATTAAATTATAATGTG
*
13073979 TATG-TTAAATTATTATGTG
1 TATGATTAAATTATAATGTG
13073998 ACTGTTTGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
TATGATTAAATTATAATGTG
Found at i:13077522 original size:30 final size:30
Alignment explanation
Indices: 13077486--13077571 Score: 145
Period size: 30 Copynumber: 2.9 Consensus size: 30
13077476 CTAGCCTTTG
*
13077486 CCACCACCAACTCCACTAGCTACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
13077516 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
13077546 CCACTACCTACTCCACTAGCCACACT
1 CCACCACCAACTCCACTAGCCACACT
13077572 CCACTACCCC
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.27, C:0.49, G:0.06, T:0.19
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:13078164 original size:25 final size:26
Alignment explanation
Indices: 13078136--13078273 Score: 85
Period size: 25 Copynumber: 5.5 Consensus size: 26
13078126 TTATATTACG
*
13078136 TATATATATT-ATACTATTTTATGTA
1 TATATATATTAATACTATATTATGTA
* *
13078161 TATATCT-TTAATACTATATTATTTA
1 TATATATATTAATACTATATTATGTA
** *
13078186 TATATATATTTACATGTTATCTTATGTA
1 TATATATA-TTA-ATACTATATTATGTA
*
13078214 TATAT-T-TTAAT--TATATTATCTA
1 TATATATATTAATACTATATTATGTA
* * * *
13078236 TGTAT-TTTTTACACTATATTATGTA
1 TATATATATTAATACTATATTATGTA
* *
13078261 CATAT-TTTTAATA
1 TATATATATTAATA
13078274 TTATCACGTA
Statistics
Matches: 88, Mismatches: 18, Indels: 14
0.73 0.15 0.12
Matches are distributed among these distances:
22 14 0.16
23 3 0.03
24 4 0.05
25 47 0.53
27 4 0.05
28 16 0.18
ACGTcount: A:0.34, C:0.07, G:0.04, T:0.56
Consensus pattern (26 bp):
TATATATATTAATACTATATTATGTA
Found at i:13078227 original size:22 final size:22
Alignment explanation
Indices: 13078202--13078243 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
13078192 TATTTACATG
* *
13078202 TTATCTTATGTATATATTTTAA
1 TTATATTATCTATATATTTTAA
*
13078224 TTATATTATCTATGTATTTT
1 TTATATTATCTATATATTTT
13078244 TTACACTATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.62
Consensus pattern (22 bp):
TTATATTATCTATATATTTTAA
Found at i:13078276 original size:20 final size:20
Alignment explanation
Indices: 13078251--13078309 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 20
13078241 TTTTTACACT
13078251 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
** *
13078271 ATATTATCACGTATTTATTTTTT
1 ATATTAT---GTACATATTTTTA
13078294 ATA-TATGTACATATTT
1 ATATTATGTACATATTT
13078310 ATGTAGTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 3 0.10
23 13 0.42
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:13078447 original size:16 final size:15
Alignment explanation
Indices: 13078423--13078457 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
13078413 TAATTATTAT
13078423 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
13078439 TATTTTAATATTTTA
1 TATTCTAATATTTTA
13078454 TATT
1 TATT
13078458 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:13085794 original size:232 final size:234
Alignment explanation
Indices: 13085387--13086126 Score: 849
Period size: 232 Copynumber: 3.2 Consensus size: 234
13085377 TTCATTTCTG
* * *
13085387 TTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCATTGGCTCACGTGTTGGGTCACT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGTTGAGTCACT
* * *
13085452 TTCAATTTTTGTTTTTATGTCTGTTTTTTAAATCAACTCATATTGTGGGAGGTGAGTTGAGCCTC
66 TTCAATTTCTATTTTTATGTCTGTTTTTTAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTC
*
13085517 GGGGCACGCTGAGGTATTTTCAATTGTTGTTTGTCAAAAATCAACTCATGTTGCGGGAGGTAAGT
131 GGGGCACGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATGTTGCGGGAGGTAAGT
* *
13085582 TGAGCCTTGAGG-CAC-GCCGGGGTATTTTCAAA-TTCTAC
196 TGAGCCTCG-GGTCACAGCCGAGGTATTTT-AAATTTCTAC
13085620 -TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGTTGAGTCACT
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGTTGAGTCACT
*
13085684 TTCAATTTCTATTTTTATGTCTGTTTTTTAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTT
66 TTCAATTTCTATTTTTATGTCTGTTTTTTAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTC
*
13085749 GGGGCACGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATGTTGCGGGAGGTGAGT
131 GGGGCACGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATGTTGCGGGAGGTAAGT
* *
13085814 TGAGCCTCGGGTCACATGTCGAGGTATTTTAAATTTCTGC
196 TGAGCCTCGGGTCACA-GCCGAGGTATTTTAAATTTCTAC
* * * * * *
13085854 TTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACATGCTGAGGT-AA
1 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGTTGA-GTCAC
**** **
13085916 TTGT-AATTTCTA----T-TGTC----AAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCC
65 TT-TCAATTTCTATTTTTATGTCTGTTTTTTAAATCAACTCATATTGCGGGAGGTGAGTTGAGCC
*** * *
13085971 TCGACTCACGTGCTGAGGCATTTTCAATTTCTGTCTCTGTTTGTC-AAAATCAACTCATATTGCG
129 TCGGGGCAC--GCTGAGGTATTTTCAA--T-TG---CTGTTTGTCAAAAATCAACTCATGTTGCG
* * * * *
13086035 AGAGGTGAGTTGAGCCTCAGGG-CAC-GCTGAGGTATTTTCAATTTCT-G
186 GGAGGTAAGTTGAGCCTC-GGGTCACAGCCGAGGTATTTTAAATTTCTAC
* *
13086082 TTTGTCAAAAAAA-CTAACTCATATTGTGAAAGGTGAGTTGAGCCT
1 TTT-TCAAAAAAATC-AACTCATATTGCGAGAGGTGAGTTGAGCCT
13086127 AAGGGCACGC
Statistics
Matches: 450, Mismatches: 39, Indels: 40
0.85 0.07 0.08
Matches are distributed among these distances:
224 37 0.08
226 15 0.03
228 9 0.02
229 57 0.13
231 40 0.09
232 208 0.46
233 21 0.05
234 19 0.04
235 44 0.10
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.34
Consensus pattern (234 bp):
TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGTTGAGTCACT
TTCAATTTCTATTTTTATGTCTGTTTTTTAAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTC
GGGGCACGCTGAGGTATTTTCAATTGCTGTTTGTCAAAAATCAACTCATGTTGCGGGAGGTAAGT
TGAGCCTCGGGTCACAGCCGAGGTATTTTAAATTTCTAC
Found at i:13085913 original size:75 final size:73
Alignment explanation
Indices: 13085713--13086631 Score: 558
Period size: 75 Copynumber: 12.0 Consensus size: 73
13085703 TCTGTTTTTT
* * * *
13085713 AAATCAACTCATATTGCGGGAGGTGAGTTGAGCCTTGGGGCACGCTGAGGTATTTTCAATTGCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTCTG
13085778 TTTGTC-AA
66 TTT-TCAAA
* * * *
13085786 AAATCAACTCATGTTGCGGGAGGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTAAATTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCT-GAGGTATTTTCAATTT
13085850 CTGCTTTTCAAA
63 CTG-TTTTCAAA
* *
13085862 AGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTAATTGT-AATTTC
1 A-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGT-ATTTTCAATTTC
* *
13085926 TATTGTCAAAA
64 TGTTTTC-AAA
* *** *
13085937 AAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGACTCACGTGCTGAGGCATTTTCAATTTC
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC--GCTGAGGTATTTTCAATTTC
***
13086002 TGTCTCTGTTTGTCA
64 TG----T-TTTCAAA
13086017 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGG-CACGCTGAGGTATTTTCAATTTCT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGACACGCTGAGGTATTTTCAATTTCT
13086081 GTTTGTCAAA
65 GTTT-TCAAA
* * * *
13086091 AAAACTAACTCATATTGTGAAAGGTGAGTTGAGCCTAAGGG-CACGCTGAGGTATTTTCAATTTC
1 AAATC-AACTCATATTGCGAGAGGTGAGTTGAGCCT-CGGGACACGCTGAGGTATTTTCAATTTC
*
13086155 TGTTTGTTTTTAAA
64 ----TGTTTTCAAA
* * * *
13086169 AAAACAAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCATACGCTGAGGTATTTTCCATTT
1 AAATC-AACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG--ACACGCTGAGGTATTTTCAATTT
*
13086234 CTGTTCTTTAATTTCTA
63 CTGTT-TTCAA-----A
*** ** * * * * * * * ** **
13086251 TGGTTCAA-AAAAATCAGCTCATATTGCGAGAGGTGAG--T--TGA-AC-CTTGACTGACACGTT
1 -AAATCAACTCATAT-TGC-GAGA--G-GTGAGTTGAGCCTCGGGACACGC-TGA--GGTATTTT
* *
13086309 GAGGTATTTTCAATTTCTGCCTTTCAAAA
57 CA---A-TT------TCTG-TTTTC-AAA
* *
13086338 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTCTG
13086403 TCTTTCAAAAAA
66 T-TTTC---AAA
* * *
13086415 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGATAATTTT-TATTTCT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGT-ATTTTCAATTTCT
*
13086479 G-TTT-GAA
65 GTTTTCAAA
* * * * ** *
13086486 AATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTCTG
13086551 TCTTTCAAAA
66 T-TTTC-AAA
* * * * * * *
13086561 AAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTC--AAGACGCTGAGGTGTTTTCCATTTTTG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTCTG
13086624 TTCTTCAA
66 TT-TTCAA
13086632 TTTCTGTGTT
Statistics
Matches: 664, Mismatches: 110, Indels: 145
0.72 0.12 0.16
Matches are distributed among these distances:
70 5 0.01
71 51 0.08
72 3 0.00
73 67 0.10
74 49 0.07
75 144 0.22
76 29 0.04
77 103 0.16
78 62 0.09
79 10 0.02
80 62 0.09
81 12 0.02
82 15 0.02
83 4 0.01
84 3 0.00
85 10 0.02
86 16 0.02
87 9 0.01
88 1 0.00
91 6 0.01
92 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.33
Consensus pattern (73 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTCTG
TTTTCAAA
Found at i:13085963 original size:309 final size:298
Alignment explanation
Indices: 13085481--13086591 Score: 1080
Period size: 309 Copynumber: 3.6 Consensus size: 298
13085471 TCTGTTTTTT
* *
13085481 AAATCAACTCATATTGTGGGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTGT-T
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGGCACGCTGAGGTATTTTCAATT-TCT
* ** * * * *
13085545 GTTTGTC-AAAAATCAACTCATGTTGCGGGAGGTAAGTTGAGCCTTGAGG-CACGCCGGGGTATT
64 GTTT-TCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCG-GGACACGCTGAGGTATT
* * *
13085608 TTCAAATTCTACTT-TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACG
127 GTCAATTTCTA-TTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGACTCACG
* ** *
13085672 TGTTGAGTCACTTTCAATTTCTATTTTTATGTCTGTTTTTTAAATCAACTCATATTGCGGGAGGT
191 TGTTGAGTCATTTTCAATTTC------T-TGTCTGTTTTAAAAATCAACTCATATTGCGAGAGGT
** *
13085737 GAGTTGAGCCTTGGGGCACGCTGAGGTATTTTCAATTGCTGTTTGTC-AA
249 GAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTTTGTCAAA
* * *
13085786 AAATCAACTCATGTTGCGGGAGGTGAGTTGAGCCTCGGGTCACATG-TCGAGGTATTTTAAATTT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-CAC--GCT-GAGGTATTTTCAATTT
* *
13085850 CTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACATGCTGAGGTA
62 CTG-TTTTCAAAA-AATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGT-
* *
13085915 ATTGT-AATTTCTATTGTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGACTCA
124 ATTGTCAATTTCTATTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGACTCA
* * * *
13085979 CGTGCTGAGGCATTTTCAATTTCTGTCTCTGTTTGTCAAAATCAACTCATATTGCGAGAGGTGAG
189 CGTGTTGAGTCATTTTCAATTTCT-TGTCTGTTT-TAAAAATCAACTCATATTGCGAGAGGTGAG
13086044 TTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTTTGTCAAA
252 TTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTTTGTCAAA
* * * *
13086091 AAAACTAACTCATATTGTGAAAGGTGAGTTGAGCCTAAGGGCACGCTGAGGTATTTTCAATTTCT
1 AAATC-AACTCATATTGCGAGAGGTGAGTTGAGCCT-CGGGCACGCTGAGGTATTTTCAATTTC-
* * *
13086156 GTTTGTTTTTAAAAAAACAAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGTCATACGCTGAG
63 ---TGTTTTCAAAAAATC-AACTCATATTGCAAGAGGTGAGTTGAGCCTCGGG--ACACGCTGAG
* *
13086221 GTATTTTCCATTTCTGTTCTTTAATTTCTATGGTTCAAAAAAATCAGCTCATATTGCGAGAGGTG
122 G-----T--A--T-TG-TC---AATTTCTATTG-TCAAAAAAATCAACTCATATTGCGAGAGGTG
* * ** * **
13086286 AGTTGAACCTTGACTGACACGTTGAGGT-ATTTTCAATTTC-TGCCT-TTCAAAAAAATCAACTC
172 AGTTGAGCCTTGACTCACGTGTTGA-GTCATTTTCAATTTCTTGTCTGTT-TTAAAAATCAACTC
* *
13086348 ATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTCTT-TCAAA
235 ATATTGCGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAGGTATTTTCAATTTCTGT-TTGTC---
13086412 AAA
296 AAA
* * *
13086415 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGATAATTTT-TATTTCT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG-CACGCTGAGGT-ATTTTCAATTTCT
* * * * ** * *
13086479 G-TTT-GAAAATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
64 GTTTTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGT
* * *
13086542 CAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGA
129 CAATTTCTAT-TGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
13086592 ACCTCAAGAC
Statistics
Matches: 684, Mismatches: 75, Indels: 99
0.80 0.09 0.12
Matches are distributed among these distances:
300 45 0.07
303 11 0.02
304 89 0.13
305 45 0.07
306 34 0.05
307 64 0.09
308 12 0.02
309 122 0.18
310 4 0.01
314 10 0.01
315 1 0.00
316 30 0.04
317 6 0.01
318 5 0.01
319 3 0.00
321 69 0.10
322 8 0.01
323 53 0.08
324 72 0.11
325 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (298 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGCACGCTGAGGTATTTTCAATTTCTGT
TTTCAAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTGTCA
ATTTCTATTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGACTCACGTGTTG
AGTCATTTTCAATTTCTTGTCTGTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC
AGGGCACGCTGAGGTATTTTCAATTTCTGTTTGTCAAA
Found at i:13086415 original size:77 final size:75
Alignment explanation
Indices: 13086254--13086609 Score: 427
Period size: 77 Copynumber: 4.8 Consensus size: 75
13086244 ATTTCTATGG
* * * * * *
13086254 TTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTTGACTGACACGTTGAGGTATTTT
1 TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC-TCA-GGACACGCTGAGGTAATTT
*
13086319 CAATTTCTGCCT
64 CAATTTCTGTCT
13086331 TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
1 TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
13086396 ATTTCTGTCT
66 ATTTCTGTCT
** *
13086406 TTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGACACGCTGAGATAATTT
1 TTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
**
13086471 TTATTTCTG--T
64 CAATTTCTGTCT
* * * * * * * *
13086481 TT--GAAAATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
1 TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
13086544 ATTTCTGTCT
66 ATTTCTGTCT
* * *
13086554 TTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA--AGACGCTGAGGT
1 TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGT
13086610 GTTTTCCATT
Statistics
Matches: 239, Mismatches: 34, Indels: 16
0.83 0.12 0.06
Matches are distributed among these distances:
71 55 0.23
73 13 0.05
75 66 0.28
76 2 0.01
77 103 0.43
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.30
Consensus pattern (75 bp):
TTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCA
ATTTCTGTCT
Found at i:13086528 original size:148 final size:149
Alignment explanation
Indices: 13086254--13086595 Score: 476
Period size: 148 Copynumber: 2.3 Consensus size: 149
13086244 ATTTCTATGG
* * *
13086254 TTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTTGACTGACACGTTGAGGTATTTT
1 TTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTTGA-GGACACGCTGAGATATTTT
* * * *
13086319 CAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCT
65 CAATTTCTG-CTTT-AAAAAAATCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGCT
13086384 GAGGTAATTTCAATTTCTGTCT
128 GAGGTAATTTCAATTTCTGTCT
* *
13086406 TTCAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTG-GGACACGCTGAGATAATT
1 TTC--AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTTGAGGACACGCTGAGAT-ATT
* * * *
13086470 TT-TATTTCTG-TTT-GAAAATTCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGTT
63 TTCAATTTCTGCTTTAAAAAAATCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGCT
*
13086532 GAGGTATTTTCAATTTCTGTCT
128 GAGGTAATTTCAATTTCTGTCT
13086554 TTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCT
1 TTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCT
13086596 CAAGACGCTG
Statistics
Matches: 171, Mismatches: 16, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
146 37 0.22
148 66 0.39
150 3 0.02
152 21 0.12
153 5 0.03
154 39 0.23
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (149 bp):
TTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTTGAGGACACGCTGAGATATTTTC
AATTTCTGCTTTAAAAAAATCAACTCATACTGCAAGAAGTGAGTTGAGCCTCAAGACACGCTGAG
GTAATTTCAATTTCTGTCT
Found at i:13086739 original size:15 final size:14
Alignment explanation
Indices: 13086703--13086735 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
13086693 CGCTGAGGTA
13086703 TTTTCAAATTCTGT
1 TTTTCAAATTCTGT
*
13086717 TTTTCAAATTTTGT
1 TTTTCAAATTCTGT
13086731 TTTTC
1 TTTTC
13086736 CAAAAAAATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.18, C:0.12, G:0.06, T:0.64
Consensus pattern (14 bp):
TTTTCAAATTCTGT
Found at i:13086849 original size:93 final size:92
Alignment explanation
Indices: 13086538--13087056 Score: 407
Period size: 92 Copynumber: 5.6 Consensus size: 92
13086528 CGTTGAGGTA
* * *
13086538 TTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCA--AGA
1 TTTTCAATTTATGT-TTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *
13086601 CGCTGAGGTGTTTTCCA----TTTTTGT
65 CGCTGAGGTATTTTCAATTTCTTTTTGT
* * * * **
13086625 TCTTCAATTTCTGTGTTTCAAAAAAAATCAGCTCATATTGCGAGCGGTGAGTTGAGCCTTAACTC
1 TTTTCAATTTATGT-TTTC-AAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCC-TCA-GG
*
13086690 ACACGCTGAGGTATTTTCAAATTC----TGT
62 ACACGCTGAGGTATTTTCAATTTCTTTTTGT
* * *
13086717 TTTTCAAATTT-TGTTTTTCCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTCAGCCTCAGGA
1 TTTTC-AATTTATG-TTTT-CAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
*
13086781 CACGCTGAGGTATTTTCAATTTCTTTTTTT
63 CACGCTGAGGTATTTTCAATTTCTTTTTGT
13086811 TTTTCAATTTATGTTTGTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCA
1 TTTTCAATTTATGTTT-TCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--A
*
13086876 CACGCCGAGGTATTTTCAATTGATGTTTTTTCTTTTT-T
63 CACGCTGAGGTATTTTC-A---A-----TTTCTTTTTGT
* * * * *
13086914 TTTTCAATTTATGCTTTGC--AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCC
1 TTTTCAATTTATG-TTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGG--A
** **
13086977 CATACTGAGGTATTTTCAAAATC----TGT
63 CACGCTGAGGTATTTTCAATTTCTTTTTGT
* * *
13087003 TTTACAAATTT-TGTTTT---AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
1 TTTTC-AATTTATGTTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCT
13087057 TGGCTCACGT
Statistics
Matches: 364, Mismatches: 36, Indels: 64
0.78 0.08 0.14
Matches are distributed among these distances:
87 52 0.14
88 40 0.11
89 9 0.02
90 28 0.08
91 2 0.01
92 65 0.18
93 56 0.15
94 10 0.03
95 17 0.05
96 1 0.00
97 1 0.00
99 1 0.00
100 1 0.00
101 54 0.15
103 15 0.04
104 12 0.03
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (92 bp):
TTTTCAATTTATGTTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTATTTTCAATTTCTTTTTGT
Found at i:13086863 original size:185 final size:179
Alignment explanation
Indices: 13086538--13086894 Score: 468
Period size: 185 Copynumber: 2.0 Consensus size: 179
13086528 CGTTGAGGTA
* * * *
13086538 TTTTCAATTTCTGTCTTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACG
1 TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTCAACCTCAACACG
* * *
13086603 CTGAGGTGTTTTCCATTTTTGTTCTTCAATTTCTGTGTTTCAAAAAAAATCAGCTCATATTGCGA
66 CTGAGGTATTTTCAATTTTTGTTCTTCAATTTATGTGTTTCAAAAAAAATCAGCTCATATTGCGA
* * *
13086668 GCGGTGAGTTGAGCCTTAACTCACACGCTGAGGTATTTTCAAATTCTGT
131 GAGGTGAGTTGAGCCTCAACTCACACGCCGAGGTATTTTCAAATTCTGT
* *
13086717 TTTTCAAATTT-TGTTTTTCCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTCAGCCTCAGGA
1 TTTTC-AATTTCTGTCTTT-CAAAAAAATCAACTCATATTGCAAGAGGTGAGTTCAACCTCA--A
* *
13086781 CACGCTGAGGTATTTTCAATTTCTTTTTTTTTTTCAATTTATGT-TTGTC-AAAAAAATCAGCTC
62 CACGCTGAGGTATTTTCAA----TTTTTGTTCTTCAATTTATGTGTT-TCAAAAAAAATCAGCTC
**
13086844 ATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
122 ATATTGCGAGAGGTGAGTTGAGCCTCAACTCACACGCCGAGGTATTTTCAA
13086895 TTGATGTTTT
Statistics
Matches: 153, Mismatches: 16, Indels: 12
0.85 0.09 0.07
Matches are distributed among these distances:
179 11 0.07
180 43 0.28
182 17 0.11
185 62 0.41
186 20 0.13
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.36
Consensus pattern (179 bp):
TTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCAAGAGGTGAGTTCAACCTCAACACG
CTGAGGTATTTTCAATTTTTGTTCTTCAATTTATGTGTTTCAAAAAAAATCAGCTCATATTGCGA
GAGGTGAGTTGAGCCTCAACTCACACGCCGAGGTATTTTCAAATTCTGT
Found at i:13086955 original size:101 final size:103
Alignment explanation
Indices: 13086800--13086995 Score: 290
Period size: 101 Copynumber: 1.9 Consensus size: 103
13086790 GTATTTTCAA
* *
13086800 TTTCTTTTTTTTTTTCAATTTATGTTTGTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGA
1 TTTCTTTTTTTTTTTCAATTTATGTTTGTC-AAAAAATCAACTCATATTACGAGAGGTGAGTTGA
*
13086865 GCCTCAGGTCACACGCCGAGGTATTTTCAATTGATGTTT
65 GCCTCAGGTCACACACCGAGGTATTTTCAATTGATGTTT
13086904 TTTC-TTTTTTTTTTCAATTTATGCTTTG-C-AAAAATCAACTCATATTACGAGAGGTGAGTTGA
1 TTTCTTTTTTTTTTTCAATTTATG-TTTGTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGA
* * * *
13086966 GCCTCGGGTCCCATACTGAGGTATTTTCAA
65 GCCTCAGGTCACACACCGAGGTATTTTCAA
13086996 AATCTGTTTT
Statistics
Matches: 84, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
101 56 0.67
103 20 0.24
104 8 0.10
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.41
Consensus pattern (103 bp):
TTTCTTTTTTTTTTTCAATTTATGTTTGTCAAAAAATCAACTCATATTACGAGAGGTGAGTTGAG
CCTCAGGTCACACACCGAGGTATTTTCAATTGATGTTT
Found at i:13087093 original size:87 final size:86
Alignment explanation
Indices: 13086933--13087140 Score: 213
Period size: 87 Copynumber: 2.4 Consensus size: 86
13086923 TATGCTTTGC
* * * * * *
13086933 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCGGGTCCCATACTGAGGTATTTTCAAAA
1 AAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCGGCTCACATACCGAGCTATGTTCAAAA
* *
13086998 TCTGTTTTACAAAT-TTTG-TTTT
66 TCTATTTT---AATGTCTGTTTTT
* * * * **
13087020 AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCCGAGCTATGTTCAATT
1 AAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCGGCTCACATACCGAGCTATGTTCAAAA
13087085 TCTATTTTAATGTCTGTTTTT
66 TCTATTTTAATGTCTGTTTTT
* * *
13087106 AAAGAGTCAATTCATATTACGAGAAATGAGTTGAG
1 AAA-AATCAACTCATATTACGAGAAGTGAGTTGAG
13087141 TTCAGGATCA
Statistics
Matches: 100, Mismatches: 18, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
84 3 0.03
85 3 0.03
86 7 0.07
87 87 0.87
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.35
Consensus pattern (86 bp):
AAAAATCAACTCATATTACGAGAAGTGAGTTGAGCCTCGGCTCACATACCGAGCTATGTTCAAAA
TCTATTTTAATGTCTGTTTTT
Found at i:13088325 original size:24 final size:23
Alignment explanation
Indices: 13088277--13088328 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 23
13088267 CTTTTTTTGT
*
13088277 TATTATTATATTTCTTAATATTA
1 TATTATTATATTTCTTAATAATA
*
13088300 TATTATATATATATTCTT-TTAATA
1 TATTAT-TATAT-TTCTTAATAATA
13088324 TATTA
1 TATTA
13088329 GGTATATTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.24
24 14 0.56
25 5 0.20
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.60
Consensus pattern (23 bp):
TATTATTATATTTCTTAATAATA
Found at i:13088382 original size:25 final size:25
Alignment explanation
Indices: 13088354--13088483 Score: 95
Period size: 25 Copynumber: 5.2 Consensus size: 25
13088344 CTATATTACG
*
13088354 TATATATATTATACTATTTTATGTA
1 TATATATATTATACTATATTATGTA
* *
13088379 TATATCT-TTAATACTATATTATTTA
1 TATATATATT-ATACTATATTATGTA
* *
13088404 TATATATATT-TAC-ATGTTATCTTA
1 TATATATATTATACTATATTAT-GTA
* * *
13088428 TGTATATATTTTAATTATATTATGTA
1 TATATATATTAT-ACTATATTATGTA
* * * *
13088454 TGTATTTTTTACACTATATTATGTA
1 TATATATATTATACTATATTATGTA
*
13088479 CATAT
1 TATAT
13088484 TTTTAATATT
Statistics
Matches: 83, Mismatches: 16, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
23 6 0.07
24 17 0.20
25 41 0.49
26 13 0.16
27 6 0.07
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.55
Consensus pattern (25 bp):
TATATATATTATACTATATTATGTA
Found at i:13088445 original size:22 final size:22
Alignment explanation
Indices: 13088420--13088527 Score: 71
Period size: 22 Copynumber: 4.9 Consensus size: 22
13088410 TATTTACATG
*
13088420 TTATCTTATGTATATATTTTAA
1 TTATATTATGTATATATTTTAA
*
13088442 TTATATTATGTATGTATTTTTTACA
1 TTATATTATGTA--TATATTTTA-A
* *
13088467 CTATATTATGTACATATTTTTAA
1 TTATATTATGTATATA-TTTTAA
* * *
13088490 -TATTATCACGTATTTATTTT--
1 TTA-TATTATGTATATATTTTAA
*
13088510 TTATA-TATGTACATATTT
1 TTATATTATGTATATATTT
13088528 ATGTAGTATT
Statistics
Matches: 67, Mismatches: 13, Indels: 15
0.71 0.14 0.16
Matches are distributed among these distances:
19 9 0.13
20 2 0.03
21 2 0.03
22 17 0.25
23 12 0.18
24 13 0.19
25 12 0.18
ACGTcount: A:0.31, C:0.06, G:0.06, T:0.57
Consensus pattern (22 bp):
TTATATTATGTATATATTTTAA
Found at i:13088494 original size:20 final size:20
Alignment explanation
Indices: 13088469--13088527 Score: 57
Period size: 23 Copynumber: 2.9 Consensus size: 20
13088459 TTTTTACACT
13088469 ATATTATGTACATATTTTTA
1 ATATTATGTACATATTTTTA
** *
13088489 ATATTATCACGTATTTATTTTTT
1 ATATTAT---GTACATATTTTTA
13088512 ATA-TATGTACATATTT
1 ATATTATGTACATATTT
13088528 ATGTAGTATT
Statistics
Matches: 31, Mismatches: 5, Indels: 7
0.72 0.12 0.16
Matches are distributed among these distances:
19 8 0.26
20 7 0.23
22 3 0.10
23 13 0.42
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (20 bp):
ATATTATGTACATATTTTTA
Found at i:13088665 original size:16 final size:15
Alignment explanation
Indices: 13088641--13088675 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
13088631 TAATTATTAT
13088641 TATTCTAATATTTTGA
1 TATTCTAATATTTT-A
*
13088657 TATTTTAATATTTTA
1 TATTCTAATATTTTA
13088672 TATT
1 TATT
13088676 ATTCACATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63
Consensus pattern (15 bp):
TATTCTAATATTTTA
Found at i:13093130 original size:19 final size:19
Alignment explanation
Indices: 13093085--13093131 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
13093075 TAAATATTAA
*
13093085 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
13093104 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
13093123 AATAAAAAT
1 AATAAAAAT
13093132 TAGATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:13095216 original size:239 final size:239
Alignment explanation
Indices: 13094797--13095278 Score: 964
Period size: 239 Copynumber: 2.0 Consensus size: 239
13094787 GACAATGAAG
13094797 AAATTAATGGTCAAACATTAGCTCCAATAATTGTTCAAAATTTAAGACAGCTACATTCAAATAAA
1 AAATTAATGGTCAAACATTAGCTCCAATAATTGTTCAAAATTTAAGACAGCTACATTCAAATAAA
13094862 AACTAAATAACTAAAGCATCCAATGGAACATAATTTCACTTTTCATCACTAAATGTTTCCTCATA
66 AACTAAATAACTAAAGCATCCAATGGAACATAATTTCACTTTTCATCACTAAATGTTTCCTCATA
13094927 AACATGGCTTCATCCAAAACAAAACCTCATACCATTACAATTTGCCTTTTAAGCAGAAGCTGCTG
131 AACATGGCTTCATCCAAAACAAAACCTCATACCATTACAATTTGCCTTTTAAGCAGAAGCTGCTG
13094992 CAACCTTCTTCCTTGGTGCTGCTTCAGTAGCTATACATCACCCC
196 CAACCTTCTTCCTTGGTGCTGCTTCAGTAGCTATACATCACCCC
13095036 AAATTAATGGTCAAACATTAGCTCCAATAATTGTTCAAAATTTAAGACAGCTACATTCAAATAAA
1 AAATTAATGGTCAAACATTAGCTCCAATAATTGTTCAAAATTTAAGACAGCTACATTCAAATAAA
13095101 AACTAAATAACTAAAGCATCCAATGGAACATAATTTCACTTTTCATCACTAAATGTTTCCTCATA
66 AACTAAATAACTAAAGCATCCAATGGAACATAATTTCACTTTTCATCACTAAATGTTTCCTCATA
13095166 AACATGGCTTCATCCAAAACAAAACCTCATACCATTACAATTTGCCTTTTAAGCAGAAGCTGCTG
131 AACATGGCTTCATCCAAAACAAAACCTCATACCATTACAATTTGCCTTTTAAGCAGAAGCTGCTG
13095231 CAACCTTCTTCCTTGGTGCTGCTTCAGTAGCTATACATCACCCC
196 CAACCTTCTTCCTTGGTGCTGCTTCAGTAGCTATACATCACCCC
13095275 AAAT
1 AAAT
13095279 AAAAAATAAG
Statistics
Matches: 243, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
239 243 1.00
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.30
Consensus pattern (239 bp):
AAATTAATGGTCAAACATTAGCTCCAATAATTGTTCAAAATTTAAGACAGCTACATTCAAATAAA
AACTAAATAACTAAAGCATCCAATGGAACATAATTTCACTTTTCATCACTAAATGTTTCCTCATA
AACATGGCTTCATCCAAAACAAAACCTCATACCATTACAATTTGCCTTTTAAGCAGAAGCTGCTG
CAACCTTCTTCCTTGGTGCTGCTTCAGTAGCTATACATCACCCC
Found at i:13096704 original size:28 final size:25
Alignment explanation
Indices: 13096663--13096722 Score: 68
Period size: 28 Copynumber: 2.3 Consensus size: 25
13096653 ACTATTGCTC
*
13096663 AATTTTATTTTATTTTTAT-TTTTAA
1 AATTTTTTTTTATTTTT-TCTTTTAA
13096688 CATATTTTTTTTCTATTTTTTCTTTTAA
1 -A-ATTTTTTTT-TATTTTTTCTTTTAA
13096716 AATTTTT
1 AATTTTT
13096723 GTGCTGAGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
26 7 0.23
27 10 0.33
28 13 0.43
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (25 bp):
AATTTTTTTTTATTTTTTCTTTTAA
Found at i:13097499 original size:21 final size:21
Alignment explanation
Indices: 13097475--13097558 Score: 69
Period size: 21 Copynumber: 3.7 Consensus size: 21
13097465 ACTCCTAAAC
*
13097475 CTTAAACCCTAAACTATACAT
1 CTTAAACCATAAACTATACAT
13097496 CTTAAACCATAGTTAACTCATAAACAT
1 CTTAAACCATA---AACT-AT--ACAT
* * *
13097523 GCTTAAACCCTAAACCATATAT
1 -CTTAAACCATAAACTATACAT
13097545 CTTAAACCATAAAC
1 CTTAAACCATAAAC
13097559 CTTAAACTAT
Statistics
Matches: 51, Mismatches: 5, Indels: 14
0.73 0.07 0.20
Matches are distributed among these distances:
21 23 0.45
22 3 0.06
24 6 0.12
25 5 0.10
27 4 0.08
28 10 0.20
ACGTcount: A:0.44, C:0.26, G:0.02, T:0.27
Consensus pattern (21 bp):
CTTAAACCATAAACTATACAT
Found at i:13097547 original size:49 final size:46
Alignment explanation
Indices: 13097459--13097555 Score: 140
Period size: 49 Copynumber: 2.0 Consensus size: 46
13097449 CTTCAAATAC
* *
13097459 TAGTTAACTCCTAAACCTTAAACCCTAAACTATACATCTTAAACCA
1 TAGTTAACTCATAAACCTTAAACCCTAAACCATACATCTTAAACCA
*
13097505 TAGTTAACTCATAAACATGCTTAAACCCTAAACCATATATCTTAAACCA
1 TAGTTAACTCATAAAC---CTTAAACCCTAAACCATACATCTTAAACCA
13097554 TA
1 TA
13097556 AACCTTAAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
46 15 0.33
49 30 0.67
ACGTcount: A:0.42, C:0.26, G:0.03, T:0.29
Consensus pattern (46 bp):
TAGTTAACTCATAAACCTTAAACCCTAAACCATACATCTTAAACCA
Found at i:13097552 original size:14 final size:14
Alignment explanation
Indices: 13097526--13097570 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 14
13097516 TAAACATGCT
*
13097526 TAAACCCTAAACCA
1 TAAACCTTAAACCA
* *
13097540 TATATCTTAAACCA
1 TAAACCTTAAACCA
*
13097554 TAAACCTTAAACTA
1 TAAACCTTAAACCA
13097568 TAA
1 TAA
13097571 TGATAATTAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (14 bp):
TAAACCTTAAACCA
Found at i:13097790 original size:41 final size:41
Alignment explanation
Indices: 13097728--13097905 Score: 277
Period size: 41 Copynumber: 4.4 Consensus size: 41
13097718 GTTATATGAC
*
13097728 TTTTAGCGGCGTTTTATCAAAAGCGCCGCTAATGCCCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCCCTGGT
13097769 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCCCTGGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCCCTGGT
* * * *
13097810 TTTTAGTGGCGTCTTACCAAAAGCGCTGCTAATGCCCTAGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCCCTGGT
* * *
13097851 TTTTAGTGGCATTTTACCAAAAGCACCGCTAATGCCCTGG-
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCCCTGGT
13097891 TTTTAGCGGCGTTTT
1 TTTTAGCGGCGTTTT
13097906 TTATAAAACG
Statistics
Matches: 125, Mismatches: 12, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
40 13 0.10
41 112 0.90
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.33
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCCCTGGT
Found at i:13097975 original size:12 final size:12
Alignment explanation
Indices: 13097960--13097985 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
13097950 GTTTTTTGAT
13097960 AAAACGCCGCTA
1 AAAACGCCGCTA
13097972 AAAACGCCGCTA
1 AAAACGCCGCTA
13097984 AA
1 AA
13097986 GCCCTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAAACGCCGCTA
Found at i:13099538 original size:26 final size:26
Alignment explanation
Indices: 13099504--13099575 Score: 83
Period size: 26 Copynumber: 2.7 Consensus size: 26
13099494 GAATTTTCTC
13099504 AAAATTTTATTAAGGGTAAAATCG-CA
1 AAAATTTTATT-AGGGTAAAATCGTCA
* *
13099530 AAAATTTTATCGAGGGTAAAATTGTCA
1 AAAATTTTAT-TAGGGTAAAATCGTCA
* *
13099557 AAAAATTTACTAGGGTAAA
1 AAAATTTTATTAGGGTAAA
13099576 TTTGGGATAA
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
26 29 0.74
27 10 0.26
ACGTcount: A:0.46, C:0.07, G:0.17, T:0.31
Consensus pattern (26 bp):
AAAATTTTATTAGGGTAAAATCGTCA
Found at i:13103648 original size:32 final size:32
Alignment explanation
Indices: 13103609--13103674 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
13103599 TCAACAAATG
13103609 TCCATGTTCAATAATTATCATCTTAATGCCAA
1 TCCATGTTCAATAATTATCATCTTAATGCCAA
*
13103641 TCCATGTTCAATCATTATCATCTTAATGCCAA
1 TCCATGTTCAATAATTATCATCTTAATGCCAA
13103673 TC
1 TC
13103675 TATGCGTTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (32 bp):
TCCATGTTCAATAATTATCATCTTAATGCCAA
Found at i:13113376 original size:39 final size:40
Alignment explanation
Indices: 13113239--13113376 Score: 226
Period size: 40 Copynumber: 3.5 Consensus size: 40
13113229 CGGATGATAA
13113239 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
13113279 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
13113319 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
13113359 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
13113377 TACTTGGTTT
Statistics
Matches: 93, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
39 17 0.18
40 76 0.82
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:13129730 original size:56 final size:56
Alignment explanation
Indices: 13129660--13129773 Score: 210
Period size: 56 Copynumber: 2.0 Consensus size: 56
13129650 ACTGGTGAAC
*
13129660 TGGGTATTTACGTTGAGTTGGGAAGGTTTTGTTTGAATCATGTATAATCGATGTAA
1 TGGGTATTTACGTTGAGTTGGAAAGGTTTTGTTTGAATCATGTATAATCGATGTAA
*
13129716 TGGGTATTTGCGTTGAGTTGGAAAGGTTTTGTTTGAATCATGTATAATCGATGTAA
1 TGGGTATTTACGTTGAGTTGGAAAGGTTTTGTTTGAATCATGTATAATCGATGTAA
13129772 TG
1 TG
13129774 TCTACTTCTA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.25, C:0.05, G:0.29, T:0.41
Consensus pattern (56 bp):
TGGGTATTTACGTTGAGTTGGAAAGGTTTTGTTTGAATCATGTATAATCGATGTAA
Found at i:13131124 original size:47 final size:47
Alignment explanation
Indices: 13131055--13131149 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
13131045 TATACTACTT
13131055 AGCCATTAGGTAGCTAGACTTCCTAAATGCATGCTTAATCGTTATCC
1 AGCCATTAGGTAGCTAGACTTCCTAAATGCATGCTTAATCGTTATCC
13131102 AGCCATTAGGTAGCTAGACTTCCTAAATGCATGCTTAATCGTTATCC
1 AGCCATTAGGTAGCTAGACTTCCTAAATGCATGCTTAATCGTTATCC
13131149 A
1 A
13131150 TTCACCATAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (47 bp):
AGCCATTAGGTAGCTAGACTTCCTAAATGCATGCTTAATCGTTATCC
Found at i:13145652 original size:27 final size:26
Alignment explanation
Indices: 13145604--13145790 Score: 241
Period size: 27 Copynumber: 7.0 Consensus size: 26
13145594 GCGAGGCTGC
* *
13145604 CAGATATTGTGAC-GAAGTCACCAGAT
1 CAGATATTGTGGCAG-AGCCACCAGAT
*
13145630 ACAGATATTGTGGCAGAGCCACCAGAA
1 -CAGATATTGTGGCAGAGCCACCAGAT
13145657 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
* * *
13145684 CAGATAATCGTGGCAGAGCCACTAGAA
1 CAGAT-ATTGTGGCAGAGCCACCAGAT
*
13145711 GAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
13145738 CAGATATATGTGGCAGAGCCACCAGAT
1 CAGATAT-TGTGGCAGAGCCACCAGAT
13145765 CAGATATTTGTGGCAGAGCCACCAGA
1 CAGATA-TTGTGGCAGAGCCACCAGA
13145791 ACGCTTCCTC
Statistics
Matches: 143, Mismatches: 12, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
26 9 0.06
27 130 0.91
28 4 0.03
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.18
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAT
Found at i:13145697 original size:54 final size:53
Alignment explanation
Indices: 13145622--13145790 Score: 266
Period size: 54 Copynumber: 3.1 Consensus size: 53
13145612 GTGACGAAGT
*
13145622 CACCAGATACAGATATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
* *
13145676 CACCAGATCAGATAATCGTGGCAGAGCCACTAGAAGAGATATATGTGGCAGAGC
1 CACCAGATCAGATAAT-GTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
* *
13145730 CACCAGATCAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCAGAGC
1 CACCAGATCAGATA-ATGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
13145784 CACCAGA
1 CACCAGA
13145791 ACGCTTCCTC
Statistics
Matches: 106, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
53 7 0.07
54 97 0.92
55 2 0.02
ACGTcount: A:0.34, C:0.22, G:0.26, T:0.17
Consensus pattern (53 bp):
CACCAGATCAGATAATGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:13145730 original size:81 final size:80
Alignment explanation
Indices: 13145622--13145791 Score: 277
Period size: 81 Copynumber: 2.1 Consensus size: 80
13145612 GTGACGAAGT
*
13145622 CACCAGATACAGATATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAG
1 CACCAGA-AGAGATATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAG
13145687 ATAATCGTGGCAGAGC
65 ATAATCGTGGCAGAGC
* *
13145703 CACTAGAAGAGATATATGTGGCAGAGCCACCAGATCAGATATATGTGGCAGAGCCACCAGATCAG
1 CACCAGAAGAGATAT-TGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAG
* *
13145768 ATATTTGTGGCAGAGC
65 ATAATCGTGGCAGAGC
13145784 CACCAGAA
1 CACCAGAA
13145792 CGCTTCCTCC
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
80 7 0.09
81 75 0.91
ACGTcount: A:0.35, C:0.22, G:0.26, T:0.17
Consensus pattern (80 bp):
CACCAGAAGAGATATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGA
TAATCGTGGCAGAGC
Found at i:13147444 original size:26 final size:26
Alignment explanation
Indices: 13147408--13147491 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
13147398 CATGAAATTC
13147408 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
13147434 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
13147460 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
13147486 TTATCA
1 TTATCA
13147492 ATTTGTATCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.37, C:0.25, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:13155189 original size:16 final size:16
Alignment explanation
Indices: 13155170--13155207 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
13155160 ATTTAGTTAG
*
13155170 TTTCGTGACACATCAT
1 TTTCGCGACACATCAT
13155186 TTTCGCGACACATCAT
1 TTTCGCGACACATCAT
13155202 TTTCGC
1 TTTCGC
13155208 TTATAAGTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.21, C:0.29, G:0.13, T:0.37
Consensus pattern (16 bp):
TTTCGCGACACATCAT
Found at i:13167381 original size:43 final size:42
Alignment explanation
Indices: 13167333--13167483 Score: 157
Period size: 42 Copynumber: 3.6 Consensus size: 42
13167323 TGTGATTTCG
* *
13167333 TGTAAGACCATGTTTGGGACGTTGGCATCG-ATTTGAAATTACA
1 TGTAAGACCATGTCTGGGACGTTGACATCGTATTTG--ATTACA
* * *
13167376 TGTAAGACCATGTCTGGTAC-TTCGACATCGTATTTGATTTCG
1 TGTAAGACCATGTCTGGGACGTT-GACATCGTATTTGATTACA
*
13167418 TGTAAGACCTTGTCTGGGACAG-TGACATCGATATTTGATTACA
1 TGTAAGACCATGTCTGGGAC-GTTGACATCG-TATTTGATTACA
* *
13167461 TGTAA-ACCACGTCTAGGACGTTG
1 TGTAAGACCATGTCTGGGACGTTG
13167484 GCGTTGTACT
Statistics
Matches: 90, Mismatches: 12, Indels: 13
0.78 0.10 0.11
Matches are distributed among these distances:
41 1 0.01
42 44 0.49
43 40 0.44
44 5 0.06
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.33
Consensus pattern (42 bp):
TGTAAGACCATGTCTGGGACGTTGACATCGTATTTGATTACA
Found at i:13167432 original size:42 final size:42
Alignment explanation
Indices: 13167325--13167479 Score: 145
Period size: 43 Copynumber: 3.7 Consensus size: 42
13167315 TTTCGATATG
* * *
13167325 TGATTTCGTGTAAGACCATGTTTGGGACGTTGGCATCG-ATT
1 TGATTTCGTGTAAGACCATGTCTGGGACATTGACATCGTATT
* * *
13167366 TGAAATTACATGTAAGACCATGTCTGGTAC-TTCGACATCGTATT
1 TG--ATTTCGTGTAAGACCATGTCTGGGACATT-GACATCGTATT
* *
13167410 TGATTTCGTGTAAGACCTTGTCTGGGACAGTGACATCGATATT
1 TGATTTCGTGTAAGACCATGTCTGGGACATTGACATCG-TATT
* * * *
13167453 TGATTACATGTAA-ACCACGTCTAGGAC
1 TGATTTCGTGTAAGACCATGTCTGGGAC
13167480 GTTGGCGTTG
Statistics
Matches: 93, Mismatches: 15, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
41 2 0.02
42 42 0.45
43 44 0.47
44 5 0.05
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.34
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATGTCTGGGACATTGACATCGTATT
Found at i:13179626 original size:45 final size:45
Alignment explanation
Indices: 13179557--13179643 Score: 129
Period size: 45 Copynumber: 1.9 Consensus size: 45
13179547 TATGTAATCT
* *
13179557 GAACTCATTGGGTTGTGGTCTGAGTTCATTATATATCTGACATCC
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATCTGACATCC
* * *
13179602 GAACTCATTGAGTTGTGGTTTGAGTTCGTGATATATGTGACA
1 GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATCTGACA
13179644 CATGTTTTGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.23, C:0.14, G:0.25, T:0.38
Consensus pattern (45 bp):
GAACTCATTGAGTTGTGGTCTGAGTTCATGATATATCTGACATCC
Found at i:13189401 original size:6 final size:6
Alignment explanation
Indices: 13189390--13189458 Score: 111
Period size: 6 Copynumber: 11.5 Consensus size: 6
13189380 AGGTTTCTAA
*
13189390 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATGA
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG
* *
13189438 AAATGA AAATGA AAATGG AAA
1 AAATGG AAATGG AAATGG AAA
13189459 CTTGCAATCT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 61 1.00
ACGTcount: A:0.57, C:0.00, G:0.28, T:0.16
Consensus pattern (6 bp):
AAATGG
Found at i:13189660 original size:26 final size:26
Alignment explanation
Indices: 13189602--13189675 Score: 78
Period size: 26 Copynumber: 2.9 Consensus size: 26
13189592 GATTTTCTCG
* * * *
13189602 AAATTTTACTAGGGTTAAAATCGTTA
1 AAATTTTATTAGGGATAAAATTGTCA
*
13189628 AAATTTTATTAGGGGTAAAATTGTCA
1 AAATTTTATTAGGGATAAAATTGTCA
* *
13189654 AATTTTTGTT-GGGATAAAATTG
1 AAATTTTATTAGGGATAAAATTG
13189676 GGATGAGAAA
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
25 11 0.27
26 30 0.73
ACGTcount: A:0.36, C:0.04, G:0.19, T:0.41
Consensus pattern (26 bp):
AAATTTTATTAGGGATAAAATTGTCA
Found at i:13191498 original size:42 final size:41
Alignment explanation
Indices: 13191443--13191532 Score: 128
Period size: 42 Copynumber: 2.1 Consensus size: 41
13191433 CACGACCAAG
*
13191443 CCACCCGCTCGTGTGCCAGGCCATGTA-CCTTCAAAATAATC
1 CCACACGCTCGTGTGCCAGGCCATGTACCCTTCAAAATAA-C
*
13191484 CCACACGCATCGTGTGCCAGGCCATGTACCCTTTAAAATAAC
1 CCACACGC-TCGTGTGCCAGGCCATGTACCCTTCAAAATAAC
13191526 CTCACAC
1 C-CACAC
13191533 ACCTATGTAA
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
41 7 0.16
42 21 0.48
43 16 0.36
ACGTcount: A:0.27, C:0.37, G:0.16, T:0.21
Consensus pattern (41 bp):
CCACACGCTCGTGTGCCAGGCCATGTACCCTTCAAAATAAC
Found at i:13196732 original size:26 final size:26
Alignment explanation
Indices: 13196700--13196751 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
13196690 TTATTCACTT
13196700 ACAAACTTACTAAGCTATGAAGCTTA
1 ACAAACTTACTAAGCTATGAAGCTTA
13196726 ACAAACTTACTAAGCTATGAAGCTTA
1 ACAAACTTACTAAGCTATGAAGCTTA
13196752 CTTTATGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.19, G:0.12, T:0.27
Consensus pattern (26 bp):
ACAAACTTACTAAGCTATGAAGCTTA
Found at i:13197242 original size:23 final size:22
Alignment explanation
Indices: 13197190--13197246 Score: 57
Period size: 23 Copynumber: 2.6 Consensus size: 22
13197180 TGAATATGGT
*
13197190 ATGAATTGTGTA--TATTGATG
1 ATGAATTGGGTACCTATTGATG
*
13197210 ATGATTTTGGGTACCTATTGTATG
1 ATGA-ATTGGGTACCTATTG-ATG
13197234 ATGAATT-GGTACC
1 ATGAATTGGGTACC
13197247 ATTTTGGTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
20 4 0.13
21 6 0.20
22 6 0.20
23 7 0.23
24 7 0.23
ACGTcount: A:0.26, C:0.07, G:0.25, T:0.42
Consensus pattern (22 bp):
ATGAATTGGGTACCTATTGATG
Found at i:13197777 original size:14 final size:14
Alignment explanation
Indices: 13197758--13197786 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
13197748 TTTTCTAATT
13197758 TTCTAAAATTTTTA
1 TTCTAAAATTTTTA
13197772 TTCTAAAATTTTTA
1 TTCTAAAATTTTTA
13197786 T
1 T
13197787 ATGTTATCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (14 bp):
TTCTAAAATTTTTA
Found at i:13199181 original size:51 final size:54
Alignment explanation
Indices: 13199121--13199281 Score: 154
Period size: 58 Copynumber: 3.0 Consensus size: 54
13199111 GTCATTTTTA
*
13199121 TTTAGGAGAAAACCATATTCATTTCCAAATGATTCC-A-CTTC-CCTATTTTCAT
1 TTTA-GAGAAAACCATAATCATTTCCAAATGATTCCTATCTTCTCCTATTTTCAT
* * *
13199173 TTTAGAGAAAACCATAATCATTTCTAAAT-ATTTCCTATTTCTTCATTTCTATTTTTAT
1 TTTAGAGAAAACCATAATCATTTCCAAATGA-TTCCTA--TCTTC--TCCTATTTTCAT
* * * *
13199231 TTTGGAGAAAACCATAATCATTTCCAAATGTTTCCCAT-TTCACC-ATTTTCA
1 TTTAGAGAAAACCATAATCATTTCCAAATGATTCCTATCTTCTCCTATTTTCA
13199282 CCATTTCTAT
Statistics
Matches: 89, Mismatches: 11, Indels: 18
0.75 0.09 0.15
Matches are distributed among these distances:
50 1 0.01
51 27 0.30
52 11 0.12
53 1 0.01
55 7 0.08
56 1 0.01
58 41 0.46
ACGTcount: A:0.31, C:0.20, G:0.06, T:0.42
Consensus pattern (54 bp):
TTTAGAGAAAACCATAATCATTTCCAAATGATTCCTATCTTCTCCTATTTTCAT
Found at i:13199278 original size:58 final size:58
Alignment explanation
Indices: 13199163--13199278 Score: 169
Period size: 58 Copynumber: 2.0 Consensus size: 58
13199153 TTCCACTTCC
* * **
13199163 CTATTTTCATTTTAGAGAAAACCATAATCATTTCTAAATATTTCCTATTTCTTCATTT
1 CTATTTTCATTTTAGAGAAAACCATAATCATTTCCAAATATTTCCCATTTCACCATTT
* * *
13199221 CTATTTTTATTTTGGAGAAAACCATAATCATTTCCAAATGTTTCCCATTTCACCATTT
1 CTATTTTCATTTTAGAGAAAACCATAATCATTTCCAAATATTTCCCATTTCACCATTT
13199279 TCACCATTTC
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.30, C:0.19, G:0.05, T:0.46
Consensus pattern (58 bp):
CTATTTTCATTTTAGAGAAAACCATAATCATTTCCAAATATTTCCCATTTCACCATTT
Found at i:13201057 original size:49 final size:49
Alignment explanation
Indices: 13200937--13201076 Score: 115
Period size: 49 Copynumber: 2.9 Consensus size: 49
13200927 GAGACCTGTT
* ** * * *
13200937 TGGGACATGGCATCGACAGCGATAGATGAGAGCCAGTGTAAGACCTGTC
1 TGGGACATGGCATCCACATTGATAGATGAAAGCCAGTGTAAGACATATC
* * * * * *
13200986 TGGAACACGGCGT-CAGCCTTGATATATGAAAGTCAGTGTAAGACATATC
1 TGGGACATGGCATCCA-CATTGATAGATGAAAGCCAGTGTAAGACATATC
* **
13201035 TGGGACATGGCATCCACTTTGAT-G-TGCTAGCCAGTGTAAGAC
1 TGGGACATGGCATCCACATTGATAGATGAAAGCCAGTGTAAGAC
13201077 CATGTCTTGA
Statistics
Matches: 69, Mismatches: 20, Indels: 6
0.73 0.21 0.06
Matches are distributed among these distances:
47 15 0.22
48 1 0.01
49 51 0.74
50 2 0.03
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (49 bp):
TGGGACATGGCATCCACATTGATAGATGAAAGCCAGTGTAAGACATATC
Found at i:13212724 original size:26 final size:26
Alignment explanation
Indices: 13212695--13212802 Score: 207
Period size: 26 Copynumber: 4.2 Consensus size: 26
13212685 TGATACAAAT
13212695 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
13212721 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
13212747 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
13212773 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
13212799 TGAT
1 TGAT
13212803 GGGAATTTCA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.31, C:0.06, G:0.27, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:13214043 original size:14 final size:15
Alignment explanation
Indices: 13214024--13214079 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 15
13214014 AATCTTCAAT
13214024 GATATG-CAATCTTA
1 GATATGACAATCTTA
13214038 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
13214055 GATATGATTGCAATCTTA
1 GATATGA---CAATCTTA
13214073 GATATGA
1 GATATGA
13214080 TATACAATCT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 6 0.17
15 1 0.03
17 14 0.39
18 15 0.42
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:13214050 original size:17 final size:17
Alignment explanation
Indices: 13214030--13214093 Score: 92
Period size: 17 Copynumber: 3.6 Consensus size: 17
13214020 CAATGATATG
13214030 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
13214047 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
13214065 CAATCTTAGATATGATATA
1 CAATCTTAGATATG--ATA
13214084 CAATCTTAGA
1 CAATCTTAGA
13214094 AGATATGATT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
17 15 0.36
18 15 0.36
19 11 0.26
20 1 0.02
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.36
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:13214068 original size:35 final size:37
Alignment explanation
Indices: 13214022--13214100 Score: 121
Period size: 35 Copynumber: 2.2 Consensus size: 37
13214012 ATAATCTTCA
13214022 ATGATATGCAATCTTAGATATG-ATACAATCTTAGAT
1 ATGATATGCAATCTTAGATATGAATACAATCTTAGAT
13214058 ATGAT-TGCAATCTTAGATATGATATACAATCTTAGA-
1 ATGATATGCAATCTTAGATATGA-ATACAATCTTAGAT
13214094 A-GATATG
1 ATGATATG
13214101 ATTTTGTAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
35 19 0.47
36 8 0.20
37 13 0.32
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.35
Consensus pattern (37 bp):
ATGATATGCAATCTTAGATATGAATACAATCTTAGAT
Found at i:13214488 original size:21 final size:21
Alignment explanation
Indices: 13214446--13214506 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
13214436 AAATTATTAT
*
13214446 TATATATTATAT-TTTAACTTA
1 TATATATTATATATTT-ATTTA
*
13214467 TATATCTTATATATTTATTTA
1 TATATATTATATATTTATTTA
* *
13214488 TTTATATTATACA-TTATTT
1 TATATATTATATATTTATTT
13214507 TGAAAACTTA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
20 6 0.18
21 25 0.74
22 3 0.09
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (21 bp):
TATATATTATATATTTATTTA
Found at i:13214888 original size:3 final size:3
Alignment explanation
Indices: 13214880--13214911 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
13214870 TATGTTACTA
13214880 TAT TAT TAT TAT TAT TAT TAT TAT ATAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT T
13214912 GTATTTGTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:13220435 original size:14 final size:13
Alignment explanation
Indices: 13220412--13220472 Score: 61
Period size: 14 Copynumber: 4.4 Consensus size: 13
13220402 CTTCTATTTC
13220412 AAAAAAAAAAGAA
1 AAAAAAAAAAGAA
13220425 AAAAAAGAAAAGAA
1 AAAAAA-AAAAGAA
13220439 AAAGAGAAAAAA-ATA
1 AAA-A-AAAAAAGA-A
*
13220454 AAGAGAAAAAAGAA
1 AA-AAAAAAAAGAA
13220468 AAAAA
1 AAAAA
13220473 TGGAGAGGCC
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
13 8 0.20
14 20 0.50
15 9 0.22
16 3 0.08
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.02
Consensus pattern (13 bp):
AAAAAAAAAAGAA
Found at i:13220473 original size:21 final size:22
Alignment explanation
Indices: 13220412--13220473 Score: 85
Period size: 22 Copynumber: 2.9 Consensus size: 22
13220402 CTTCTATTTC
13220412 AAAA-AAAAAAGAAAAAAA-AG
1 AAAAGAAAAAAGAAAAAAATAG
13220432 AAAAGAAAAAGAGAAAAAAATA-
1 AAAAGAAAAA-AGAAAAAAATAG
*
13220454 AAGAGAAAAAAGAAAAAAAT
1 AAAAGAAAAAAGAAAAAAAT
13220474 GGAGAGGCCA
Statistics
Matches: 38, Mismatches: 1, Indels: 5
0.86 0.02 0.11
Matches are distributed among these distances:
20 4 0.11
21 15 0.39
22 18 0.47
23 1 0.03
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (22 bp):
AAAAGAAAAAAGAAAAAAATAG
Found at i:13220479 original size:21 final size:21
Alignment explanation
Indices: 13220416--13220479 Score: 83
Period size: 21 Copynumber: 3.0 Consensus size: 21
13220406 TATTTCAAAA
* *
13220416 AAAAAAGAAAAAAAAGAAAAG
1 AAAAAAGAAAAAAATGAAGAG
*
13220437 AAAAAGAGAAAAAAATAAAGAG
1 AAAAA-AGAAAAAAATGAAGAG
*
13220459 AAAAAAGAAAAAAATGGAGAG
1 AAAAAAGAAAAAAATGAAGAG
13220480 GCCAAGGTGA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 19 0.51
22 18 0.49
ACGTcount: A:0.78, C:0.00, G:0.19, T:0.03
Consensus pattern (21 bp):
AAAAAAGAAAAAAATGAAGAG
Found at i:13221491 original size:44 final size:44
Alignment explanation
Indices: 13221350--13221529 Score: 195
Period size: 44 Copynumber: 4.1 Consensus size: 44
13221340 CAAAGAAACA
* *
13221350 AGATTTGGCATCCCTATGTTTATAGGGAACAGATCGAAGATAGT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
* * * * * * * * **
13221394 AGATCTGACATTCCTGTGCTTACAGCGAAGTAGATTGAAGATTTC
1 AGATTTGGCATCCCTGTGTTTATAGGGAA-CAGATCGAAGATAGC
*
13221439 AGCA--TGGCATCCCTGTGTTTATAGGGAACA-AGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAGA-TCGAAGATAGC
13221482 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
13221526 AGAT
1 AGAT
13221530 CTAACCTTCA
Statistics
Matches: 109, Mismatches: 21, Indels: 12
0.77 0.15 0.08
Matches are distributed among these distances:
42 2 0.02
43 12 0.11
44 81 0.74
45 13 0.12
46 1 0.01
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.28
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAGATCGAAGATAGC
Found at i:13221736 original size:119 final size:119
Alignment explanation
Indices: 13221525--13222112 Score: 1036
Period size: 119 Copynumber: 5.0 Consensus size: 119
13221515 TCGAAGATAG
13221525 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
1 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
13221590 AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAA
66 AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAA
*
13221644 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGGTTAC
1 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
*
13221709 AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAG
66 AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAA
* *
13221763 CAGATCTAACCTTCAGATGTTTATACAGAAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
1 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
13221828 AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAA
66 AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAA
*
13221882 CAGATCTAACCTTCA-ATGTTTATACTGAA-CAGATCCAAGATGATTTGGTATTCTTGTGTTTAC
1 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
* *
13221945 AAGAAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAG
66 AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAA
* * *
13221999 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGTTTTGGCATCCTTGTGCTTAC
1 CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
* * * *
13222064 AAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAA
66 AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
13222113 CAGACTCAAG
Statistics
Matches: 449, Mismatches: 18, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
117 101 0.22
118 27 0.06
119 321 0.71
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.29
Consensus pattern (119 bp):
CAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGTTTAC
AAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAA
Found at i:13222032 original size:236 final size:238
Alignment explanation
Indices: 13221521--13222112 Score: 1062
Period size: 236 Copynumber: 2.5 Consensus size: 238
13221511 CAGATCGAAG
13221521 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
13221586 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAACAGATCT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAACAGATCT
*
13221651 AACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGGTTACAAGGAAC
131 AACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGGTTACAAGAAAC
13221716 AAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
196 AAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* *
13221759 ATAGCAGATCTAACCTTCAGATGTTTATACAGAAGCAGATCCAAGATGATTTGGTATTCTTGTGT
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
13221824 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAACAGATCT
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAACAGATCT
* *
13221889 AACCTTCA-ATGTTTATACTGAA-CAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGAAAC
131 AACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGGTTACAAGAAAC
13221952 AAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
196 AAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
* * *
13221995 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGTTTTGGCATCCTTGTGC
1 ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
* * * *
13222060 TTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCAAATGTTCTCAAA
66 TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAA
13222113 CAGACTCAAG
Statistics
Matches: 340, Mismatches: 14, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
236 190 0.56
237 14 0.04
238 136 0.40
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (238 bp):
ATAGCAGATCTAACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGT
TTACAAGGAACAAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAATATAACAGATCT
AACCTTCAGATGTTTATACTGAAGCAGATCCAAGATGATTTGGCATTCTTGTGGTTACAAGAAAC
AAATCGAGGACATAGCAGATTTGACTCTCAGACGTTCTCAAAT
Found at i:13222141 original size:83 final size:83
Alignment explanation
Indices: 13222036--13222388 Score: 598
Period size: 83 Copynumber: 4.2 Consensus size: 83
13222026 GAAGCAGATC
*
13222036 CAAGATGTTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
13222101 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
*
13222119 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAAATATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
13222184 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * *
13222202 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATAGAGGACCTTGCAGACATGACTCTCA
1 CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
13222267 AATGTTCTCAAACAGACT
66 AATGTTCTCAAACAGACT
* * *
13222285 CAAGATGGTTTAGGCATCCTTGTGCTTACAAGGAACAAGTCGAGGACCTTGCAGATATGATTCTC
1 CAAGATGGTTT-GGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTC
13222350 AAATGTTCTCAAACAGACT
65 AAATGTTCTCAAACAGACT
* * *
13222369 GAAGATGATTTGACATCCTT
1 CAAGATGGTTTGGCATCCTT
13222389 ACAAATCGAA
Statistics
Matches: 256, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
83 179 0.70
84 77 0.30
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.27
Consensus pattern (83 bp):
CAAGATGGTTTGGCATCCTTGTGCTTACAAGGAACAAATCGAGGACATTGCAGATATGACTCTCA
AATGTTCTCAAACAGACT
Found at i:13222800 original size:17 final size:17
Alignment explanation
Indices: 13222780--13222878 Score: 137
Period size: 17 Copynumber: 5.6 Consensus size: 17
13222770 CAATGATATG
13222780 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
13222797 CAATCTTAGATATGATTGA
1 CAATCTTAGATATGA-T-A
13222816 -AATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
13222832 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
13222850 CAATCTTAGATATGATATA
1 CAATCTTAGATATG--ATA
13222869 CAATCTTAGA
1 CAATCTTAGA
13222879 AGATATGATT
Statistics
Matches: 74, Mismatches: 2, Indels: 10
0.86 0.02 0.12
Matches are distributed among these distances:
16 1 0.01
17 30 0.41
18 30 0.41
19 12 0.16
20 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.36
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:13222821 original size:18 final size:18
Alignment explanation
Indices: 13222780--13222878 Score: 150
Period size: 18 Copynumber: 5.6 Consensus size: 18
13222770 CAATGATATG
13222780 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
13222797 CAATCTTAGATATGATTGA
1 CAATCTTAGATATGATT-A
13222816 -AATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
13222832 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTA
13222850 CAATCTTAGATATGATATA
1 CAATCTTAGATATGAT-TA
13222869 CAATCTTAGA
1 CAATCTTAGA
13222879 AGATATGATT
Statistics
Matches: 75, Mismatches: 2, Indels: 8
0.88 0.02 0.09
Matches are distributed among these distances:
16 1 0.01
17 30 0.40
18 32 0.43
19 12 0.16
ACGTcount: A:0.39, C:0.11, G:0.13, T:0.36
Consensus pattern (18 bp):
CAATCTTAGATATGATTA
Found at i:13222821 original size:35 final size:35
Alignment explanation
Indices: 13222772--13222878 Score: 178
Period size: 35 Copynumber: 3.0 Consensus size: 35
13222762 ATAATCTTCA
13222772 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
*
13222808 ATGATTGAAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
13222843 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
13222879 AGATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
35 49 0.73
36 5 0.07
37 13 0.19
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.36
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:13223201 original size:12 final size:11
Alignment explanation
Indices: 13223186--13223219 Score: 50
Period size: 12 Copynumber: 2.9 Consensus size: 11
13223176 TATTTTTAAT
13223186 TTATTATATATA
1 TTATT-TATATA
13223198 TTATTTATTATA
1 TTATTTA-TATA
13223210 TTATTTATAT
1 TTATTTATAT
13223220 TTTCAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
TTATTTATATA
Found at i:13223211 original size:21 final size:21
Alignment explanation
Indices: 13223187--13223295 Score: 61
Period size: 21 Copynumber: 5.3 Consensus size: 21
13223177 ATTTTTAATT
13223187 TATTATATATATTATTTATTA
1 TATTATATATATTATTTATTA
* *
13223208 TATTATTTATATT-TTCA--A
1 TATTATATATATTATTTATTA
* * *
13223226 AATT-TGTAAATTA-TTATTA
1 TATTATATATATTATTTATTA
* *
13223245 TA-TATTATATTTTAACTTATATA
1 TATTA-TATATATT-ATTTAT-TA
*
13223268 TCTTATATAT-TTATTTATTTA
1 TATTATATATATTATTTA-TTA
13223289 TATTATA
1 TATTATA
13223296 CATTATTTTG
Statistics
Matches: 65, Mismatches: 13, Indels: 20
0.66 0.13 0.20
Matches are distributed among these distances:
17 8 0.12
18 5 0.08
19 2 0.03
20 8 0.12
21 25 0.38
22 7 0.11
23 8 0.12
24 2 0.03
ACGTcount: A:0.37, C:0.03, G:0.01, T:0.60
Consensus pattern (21 bp):
TATTATATATATTATTTATTA
Found at i:13223217 original size:16 final size:16
Alignment explanation
Indices: 13223184--13223214 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
13223174 CTTATTTTTA
13223184 ATTTATTATATATATT
1 ATTTATTATATATATT
13223200 ATTTATTATAT-TATT
1 ATTTATTATATATATT
13223215 TATATTTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTATTATATATATT
Found at i:13223428 original size:25 final size:24
Alignment explanation
Indices: 13223396--13223473 Score: 79
Period size: 25 Copynumber: 3.2 Consensus size: 24
13223386 TAAAATTCAC
13223396 TATTAAATATTATATTTTTATGTAT
1 TATTAAATATTATATTTTT-TGTAT
* *
13223421 TATTAAATGTTTATATTATTTG-AT
1 TATTAAAT-ATTATATTTTTTGTAT
*
13223445 ATAATACAATATTATATTTTTT-TAT
1 -TATTA-AATATTATATTTTTTGTAT
13223470 TATT
1 TATT
13223474 TTATCTTAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 9
0.74 0.10 0.16
Matches are distributed among these distances:
24 5 0.12
25 26 0.60
26 12 0.28
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.59
Consensus pattern (24 bp):
TATTAAATATTATATTTTTTGTAT
Found at i:13226682 original size:15 final size:15
Alignment explanation
Indices: 13226654--13226687 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
13226644 ATAAAGATTT
*
13226654 TGGGGCACACGACCG
1 TGGGGAACACGACCG
*
13226669 TGGGGAACATGACCG
1 TGGGGAACACGACCG
13226684 TGGG
1 TGGG
13226688 ACACGCCCGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.24, G:0.44, T:0.12
Consensus pattern (15 bp):
TGGGGAACACGACCG
Found at i:13235461 original size:27 final size:27
Alignment explanation
Indices: 13235430--13235607 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
13235420 TAAATTGTAC
13235430 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
13235457 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
13235483 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
13235511 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
13235539 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
13235566 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
13235593 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
13235608 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:13235544 original size:82 final size:81
Alignment explanation
Indices: 13235431--13235586 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
13235421 AAATTGTACA
* *
13235431 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
13235495 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
13235512 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
13235577 TGCGAGTTGA
65 TGCGAATTGA
13235587 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:13235598 original size:82 final size:81
Alignment explanation
Indices: 13235427--13235607 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
13235417 GATTAAATTG
* *
13235427 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
13235492 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
13235508 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
13235572 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
13235590 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
13235608 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:13243560 original size:27 final size:27
Alignment explanation
Indices: 13243529--13243706 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
13243519 TAAATTGTAC
13243529 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
13243556 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
13243582 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
13243610 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
13243638 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
13243665 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
13243692 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
13243707 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Done.