Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 47 of 295
Found at i:13542012 original size:31 final size:31
Alignment explanation
Indices: 13541934--13542041 Score: 78
Period size: 31 Copynumber: 3.6 Consensus size: 31
13541924 AAGTATGGGT
** *
13541934 AAATTTTCATTTTGGTCACTTAACTA--AAA
1 AAATTTTCATTTAAGTCACTAAACTATTAAA
* * * * *
13541963 AAATTATAATTTGA-TCACTGAACTATTTAA
1 AAATTTTCATTTAAGTCACTAAACTATTAAA
* *
13541993 AAATTTTCATTTAAGTCACTAAATTATTGAA
1 AAATTTTCATTTAAGTCACTAAACTATTAAA
* * *
13542024 AAGTTTTTATTGAAGTCA
1 AAATTTTCATTTAAGTCA
13542042 TGGGCTGTTA
Statistics
Matches: 61, Mismatches: 15, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
28 10 0.16
29 10 0.16
30 13 0.21
31 28 0.46
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (31 bp):
AAATTTTCATTTAAGTCACTAAACTATTAAA
Found at i:13558995 original size:12 final size:12
Alignment explanation
Indices: 13558980--13559010 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
13558970 TTCTCTTTTA
13558980 TTTTTCTTTCCC
1 TTTTTCTTTCCC
*
13558992 TTTTTCTTTCTC
1 TTTTTCTTTCCC
13559004 TTTTTCT
1 TTTTTCT
13559011 CCCCTGCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTCTTTCCC
Found at i:13559527 original size:3 final size:3
Alignment explanation
Indices: 13559519--13559588 Score: 56
Period size: 3 Copynumber: 23.7 Consensus size: 3
13559509 TTAATTTATT
* * *
13559519 TAA TAA TAA TAC TAA TAA TAA TAA T-C TAA T-A TAA -AA TCA TAA TTAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -TAA
* *
13559565 TAA TTA TAA TAA TTA TATA TAA TA
1 TAA TAA TAA TAA TAA TA-A TAA TA
13559589 TTTAAATATA
Statistics
Matches: 52, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
2 5 0.10
3 41 0.79
4 6 0.12
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (3 bp):
TAA
Found at i:13560777 original size:11 final size:11
Alignment explanation
Indices: 13560761--13560785 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
13560751 CTGTGTGTTC
13560761 TTTATTTTATT
1 TTTATTTTATT
13560772 TTTATTTTATT
1 TTTATTTTATT
13560783 TTT
1 TTT
13560786 TTCACAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTATTTTATT
Found at i:13565965 original size:11 final size:12
Alignment explanation
Indices: 13565949--13565978 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
13565939 AATTTTTATT
13565949 ATTTTTTTGTCC
1 ATTTTTTTGTCC
13565961 ATTTTTTTGTCC
1 ATTTTTTTGTCC
13565973 ATTTTT
1 ATTTTT
13565979 CCATTTGTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.10, C:0.13, G:0.07, T:0.70
Consensus pattern (12 bp):
ATTTTTTTGTCC
Found at i:13568076 original size:75 final size:75
Alignment explanation
Indices: 13567946--13568154 Score: 312
Period size: 75 Copynumber: 2.8 Consensus size: 75
13567936 TGCGCCCAAC
* * *
13567946 GCTAGTCGGATTAATCGACGGTAATGAATGTGAGTCCAACTCTAGTTGGATAAACCAACAATATT
1 GCTAGTCGGATTAATCGACGATAATGAATGTGAGCCCAGCTCTAGTTGGATAAACCAACAATATT
*
13568011 TGCACCTAGT
66 TGCACCCAGT
* *
13568021 GTTAGTTGGATTAATCGACGATAATGAATGTGAGCCCAGCTCTAGTTGGATAAACCAACAATATT
1 GCTAGTCGGATTAATCGACGATAATGAATGTGAGCCCAGCTCTAGTTGGATAAACCAACAATATT
*
13568086 TGCACCCCGT
66 TGCACCCAGT
* * *
13568096 GCTAGTCGGATTAACCAATGATAAT-AATTGTGAGCCCAGCTCTAGTTGGATAAACCAAC
1 GCTAGTCGGATTAATCGACGATAATGAA-TGTGAGCCCAGCTCTAGTTGGATAAACCAAC
13568155 GGTGAATTGC
Statistics
Matches: 121, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
74 2 0.02
75 119 0.98
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (75 bp):
GCTAGTCGGATTAATCGACGATAATGAATGTGAGCCCAGCTCTAGTTGGATAAACCAACAATATT
TGCACCCAGT
Found at i:13568152 original size:40 final size:39
Alignment explanation
Indices: 13568040--13568153 Score: 107
Period size: 40 Copynumber: 3.0 Consensus size: 39
13568030 ATTAATCGAC
13568040 GATAATGAA-TGTGAGCCCAGCTCTAGTTGGATAAACC-A
1 GATAAT-AATTGTGAGCCCAGCTCTAGTTGGATAAACCAA
* * * *
13568078 -ACAAT-ATT-TGCA-CCCCG-TGCTAGTCGGATTAACCAA
1 GATAATAATTGTG-AGCCCAGCT-CTAGTTGGATAAACCAA
13568114 TGATAATAATTGTGAGCCCAGCTCTAGTTGGATAAACCAA
1 -GATAATAATTGTGAGCCCAGCTCTAGTTGGATAAACCAA
13568154 CGGTGAATTG
Statistics
Matches: 58, Mismatches: 8, Indels: 18
0.69 0.10 0.21
Matches are distributed among these distances:
34 1 0.02
35 20 0.34
36 3 0.05
37 4 0.07
38 4 0.07
39 4 0.07
40 21 0.36
41 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.25
Consensus pattern (39 bp):
GATAATAATTGTGAGCCCAGCTCTAGTTGGATAAACCAA
Found at i:13569163 original size:3 final size:3
Alignment explanation
Indices: 13569150--13569194 Score: 81
Period size: 3 Copynumber: 14.7 Consensus size: 3
13569140 ACTATATCTT
13569150 TTA TCTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
13569195 TATTTTCTAA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 38 0.93
4 3 0.07
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:13571153 original size:22 final size:20
Alignment explanation
Indices: 13571121--13571162 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 20
13571111 AAAGAAAAGT
*
13571121 AAAAAAAAAAACTTTGATGG
1 AAAAAAAAAAACGTTGATGG
13571141 AAAAAATAGAAAACGTTGATGG
1 AAAAAA-A-AAAACGTTGATGG
13571163 CTAAAGGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
21 1 0.05
22 12 0.63
ACGTcount: A:0.57, C:0.05, G:0.19, T:0.19
Consensus pattern (20 bp):
AAAAAAAAAAACGTTGATGG
Found at i:13571404 original size:21 final size:21
Alignment explanation
Indices: 13571378--13571432 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
13571368 ACCGCTATTT
* *
13571378 CTAATCTCACTGCTACAATAC
1 CTAATCTCACCGCTACAATAA
* *
13571399 CTAATCTCACCGCTATAGTAA
1 CTAATCTCACCGCTACAATAA
13571420 CTAATCTCACCGC
1 CTAATCTCACCGC
13571433 AACCGCTGTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.31, C:0.35, G:0.07, T:0.27
Consensus pattern (21 bp):
CTAATCTCACCGCTACAATAA
Found at i:13572739 original size:21 final size:21
Alignment explanation
Indices: 13572714--13572755 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
13572704 ATTATCAGTG
13572714 CAAAAGCAACCAA-AACACCAA
1 CAAAAGCAACCAAGAA-ACCAA
*
13572735 CAAAAGCACCCAAGAAACCAA
1 CAAAAGCAACCAAGAAACCAA
13572756 ATACCAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 17 0.89
22 2 0.11
ACGTcount: A:0.60, C:0.33, G:0.07, T:0.00
Consensus pattern (21 bp):
CAAAAGCAACCAAGAAACCAA
Found at i:13574506 original size:13 final size:13
Alignment explanation
Indices: 13574488--13574513 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13574478 TCAATCTAAT
13574488 AAAATAACAAAAA
1 AAAATAACAAAAA
13574501 AAAATAACAAAAA
1 AAAATAACAAAAA
13574514 TATTTAAAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.08, G:0.00, T:0.08
Consensus pattern (13 bp):
AAAATAACAAAAA
Found at i:13577475 original size:40 final size:40
Alignment explanation
Indices: 13577429--13577653 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
13577419 CTTGCGCAAG
* * *
13577429 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
13577469 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * * *
13577509 TCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
13577549 GCCTTCGGGTCTTAGCCCGAATATAG-CAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
13577589 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
13577630 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
13577654 CATTCGAATA
Statistics
Matches: 157, Mismatches: 25, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
39 1 0.01
40 126 0.80
41 30 0.19
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:13577524 original size:80 final size:80
Alignment explanation
Indices: 13577393--13577653 Score: 294
Period size: 80 Copynumber: 3.3 Consensus size: 80
13577383 CTCAAGTAAT
* * * * * * * *
13577393 CTTCGGGATTTAG-CCGGATATAACTACTTGCGC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
13577456 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * * *
13577471 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATTCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
13577535 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
13577551 CTTCGGGTCTTAGCCCGAATATAGCAACTCGCACAAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
13577616 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
13577632 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
13577654 CATTCGAATA
Statistics
Matches: 151, Mismatches: 27, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
78 12 0.08
79 15 0.10
80 92 0.61
81 32 0.21
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:13581826 original size:246 final size:243
Alignment explanation
Indices: 13581395--13581842 Score: 637
Period size: 246 Copynumber: 1.8 Consensus size: 243
13581385 ATCCTATCAC
* *
13581395 AAATTTAAAACACAAATGTCTATTTAAAATAACATATAATAAATAATAAAACATATAGTTTAAAA
1 AAATTTAAAACACAAATGTCTATTTAAAATAACATACAATAAAAAATAAAACATATAGTTTAAAA
* * *
13581460 CTAATTAATAATAACACATGAAATATTTATGTTATTCAAATAAAAAATTAGATTAAATTGTTTAT
66 CCAATTAATAATAACACATGAAATATGTATGTTATTAAAATAAAAAATTAGATTAAATTGTTTAT
* * * * *
13581525 CACGGTATTGTTATCAATTTTGAGTCAGTGTCGAGTTAACTTGTAGGACCAACTCAATCAAATAC
131 CACGGTATTGTCATCAATCTTAAGTCAGTGTCGAATTAACTTGTAGCACCAACTCAATCAAATAC
13581590 ATTATTAATATTAAAAATCCTATCACACGTGTATGCATATGGAGACTT
196 ATTATTAATATTAAAAATCCTATCACACGTGTATGCATATGGAGACTT
* * * * * * * *
13581638 AAATTTAGAAGACAAATTTTTATTTAAAAATAGCATACAATAAAAAATAAAACTTATGGTTTGAA
1 AAATTTAAAACACAAATGTCTATTT-AAAATAACATACAATAAAAAATAAAACATATAGTTTAAA
13581703 ACCAATTTAATAATAACACATGAAATATGTATGTTATTAAAATGAAAAAATTAGATTAAATTGTT
65 ACCAA-TTAATAATAACACATGAAATATGTATGTTATTAAAAT-AAAAAATTAGATTAAATTGTT
* * * ** *
13581768 TATTATGGTGTTGTCATCAATCTTAAGTTGGTGTCGAATTAATTTGT-GACACCAACTCAATCAA
128 TATCACGGTATTGTCATCAATCTTAAGTCAGTGTCGAATTAACTTGTAG-CACCAACTCAATCAA
13581832 ATACATTATTA
192 ATACATTATTA
13581843 GTCTATACAA
Statistics
Matches: 177, Mismatches: 24, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
243 21 0.12
244 37 0.21
245 36 0.20
246 83 0.47
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.35
Consensus pattern (243 bp):
AAATTTAAAACACAAATGTCTATTTAAAATAACATACAATAAAAAATAAAACATATAGTTTAAAA
CCAATTAATAATAACACATGAAATATGTATGTTATTAAAATAAAAAATTAGATTAAATTGTTTAT
CACGGTATTGTCATCAATCTTAAGTCAGTGTCGAATTAACTTGTAGCACCAACTCAATCAAATAC
ATTATTAATATTAAAAATCCTATCACACGTGTATGCATATGGAGACTT
Found at i:13583022 original size:17 final size:19
Alignment explanation
Indices: 13583002--13583043 Score: 61
Period size: 17 Copynumber: 2.3 Consensus size: 19
13582992 TTTAACAAAA
*
13583002 AATTTAATTTAC-TTG-TT
1 AATTTAATGTACATTGATT
13583019 AATTTAATGTACATTGATT
1 AATTTAATGTACATTGATT
13583038 AATTTA
1 AATTTA
13583044 CTTATTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 11 0.50
18 3 0.14
19 8 0.36
ACGTcount: A:0.36, C:0.05, G:0.07, T:0.52
Consensus pattern (19 bp):
AATTTAATGTACATTGATT
Found at i:13584345 original size:31 final size:30
Alignment explanation
Indices: 13584310--13584412 Score: 100
Period size: 31 Copynumber: 3.4 Consensus size: 30
13584300 TAATTACATT
*
13584310 AATATTAAATTACTAAAATATTTTCCAAATA
1 AATATTAAATTAATAAAATA-TTTCCAAATA
** * *
13584341 AATATTAAATTAAATTTAATATTT-CATATT
1 AATATTAAATT-AATAAAATATTTCCAAATA
* * *
13584371 AATATTAAATTAATAAAATACTATCTAGATA
1 AATATTAAATTAATAAAATA-TTTCCAAATA
13584402 AATATTAAATT
1 AATATTAAATT
13584413 TAATTTAATT
Statistics
Matches: 58, Mismatches: 11, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
29 7 0.12
30 17 0.29
31 28 0.48
32 6 0.10
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.42
Consensus pattern (30 bp):
AATATTAAATTAATAAAATATTTCCAAATA
Found at i:13584382 original size:61 final size:61
Alignment explanation
Indices: 13584307--13584421 Score: 176
Period size: 61 Copynumber: 1.9 Consensus size: 61
13584297 AATTAATTAC
* * *
13584307 ATTAATATTAAATTACTAAAATATTTTCCAAATAAATATTAAATTAAATTTAATATTTCAT
1 ATTAATATTAAATTAATAAAATACTATCCAAATAAATATTAAATTAAATTTAATATTTCAT
* * *
13584368 ATTAATATTAAATTAATAAAATACTATCTAGATAAATATTAAATTTAATTTAAT
1 ATTAATATTAAATTAATAAAATACTATCCAAATAAATATTAAATTAAATTTAAT
13584422 TATAAATTCA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
61 48 1.00
ACGTcount: A:0.50, C:0.05, G:0.01, T:0.43
Consensus pattern (61 bp):
ATTAATATTAAATTAATAAAATACTATCCAAATAAATATTAAATTAAATTTAATATTTCAT
Found at i:13589527 original size:25 final size:25
Alignment explanation
Indices: 13589499--13589565 Score: 89
Period size: 25 Copynumber: 2.7 Consensus size: 25
13589489 TCTCGAGCCA
* **
13589499 TATAACGAGAAGCTCATGTGAGCTG
1 TATAACGGGAAGCTCATCCGAGCTG
* *
13589524 TATAATGGGAAGCTTATCCGAGCTG
1 TATAACGGGAAGCTCATCCGAGCTG
13589549 TATAACGGGAAGCTCAT
1 TATAACGGGAAGCTCAT
13589566 AAGAGCCATA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.25
Consensus pattern (25 bp):
TATAACGGGAAGCTCATCCGAGCTG
Found at i:13589571 original size:25 final size:24
Alignment explanation
Indices: 13589499--13589619 Score: 84
Period size: 25 Copynumber: 5.0 Consensus size: 24
13589489 TCTCGAGCCA
* **
13589499 TATAACGAGAAGCTCATGTGAGCT
1 TATAACGGGAAGCTCATAAGAGCT
* * **
13589523 GTATAATGGGAAGCTTATCCGAGCT
1 -TATAACGGGAAGCTCATAAGAGCT
13589548 GTATAACGGGAAGCTCATAAGAGC-
1 -TATAACGGGAAGCTCATAAGAGCT
* * *
13589572 CATAATCAGGAAGCTCATATGAGCT
1 TATAA-CGGGAAGCTCATAAGAGCT
* *
13589597 AATAACGGGTAGCTCCA-AAGAGC
1 TATAACGGGAAGCT-CATAAGAGC
13589620 CATTAATCGG
Statistics
Matches: 77, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
23 4 0.05
24 28 0.36
25 45 0.58
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (24 bp):
TATAACGGGAAGCTCATAAGAGCT
Found at i:13589693 original size:23 final size:23
Alignment explanation
Indices: 13589625--13589695 Score: 79
Period size: 23 Copynumber: 3.0 Consensus size: 23
13589615 AGAGCCATTA
*
13589625 ATCGGGAAGTTCTGGATAGCCATAT
1 ATCGGGAAGTTCTGGAAAGCC--AT
** **
13589650 ATCGGGAAGTTCAAGCGAGCCAT
1 ATCGGGAAGTTCTGGAAAGCCAT
13589673 ATCGGGAAGTTCTGGAAAGCCAT
1 ATCGGGAAGTTCTGGAAAGCCAT
13589696 TAATCAGGAA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
23 21 0.55
25 17 0.45
ACGTcount: A:0.30, C:0.18, G:0.30, T:0.23
Consensus pattern (23 bp):
ATCGGGAAGTTCTGGAAAGCCAT
Found at i:13589724 original size:26 final size:26
Alignment explanation
Indices: 13589690--13589747 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
13589680 AGTTCTGGAA
13589690 AGCCATTAATCAGGAAGCTCACAAAG
1 AGCCATTAATCAGGAAGCTCACAAAG
* * * *
13589716 AGCCTTTAATCGGGAAGTTCACGAAG
1 AGCCATTAATCAGGAAGCTCACAAAG
13589742 AGCCAT
1 AGCCAT
13589748 ATAACGGGAC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AGCCATTAATCAGGAAGCTCACAAAG
Found at i:13589755 original size:26 final size:27
Alignment explanation
Indices: 13589614--13589756 Score: 110
Period size: 25 Copynumber: 5.7 Consensus size: 27
13589604 GGTAGCTCCA
*
13589614 AAGAGCCAT-TAATCGGGAAGTTC-TG
1 AAGAGCCATATAATCGGGAAGTTCACG
* * *
13589639 GATAGCCATAT-ATCGGGAAGTTCAAG
1 AAGAGCCATATAATCGGGAAGTTCACG
* **
13589665 -CGAGCC--AT-ATCGGGAAGTTCTGG
1 AAGAGCCATATAATCGGGAAGTTCACG
* * *
13589688 AA-AGCCAT-TAATCAGGAAGCTCACA
1 AAGAGCCATATAATCGGGAAGTTCACG
*
13589713 AAGAGCC-TTTAATCGGGAAGTTCACG
1 AAGAGCCATATAATCGGGAAGTTCACG
13589739 AAGAGCCATATAA-CGGGA
1 AAGAGCCATATAATCGGGA
13589757 CGCTCATAAG
Statistics
Matches: 92, Mismatches: 17, Indels: 17
0.73 0.13 0.13
Matches are distributed among these distances:
23 19 0.21
24 1 0.01
25 36 0.39
26 32 0.35
27 4 0.04
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.20
Consensus pattern (27 bp):
AAGAGCCATATAATCGGGAAGTTCACG
Found at i:13598314 original size:63 final size:63
Alignment explanation
Indices: 13598236--13598361 Score: 252
Period size: 63 Copynumber: 2.0 Consensus size: 63
13598226 AGAAACCAAA
13598236 TCAAATCAAGTCAAACCAAACACTAAAACTCATCTTTGTAAACCACATCCTATGGTGAACAAG
1 TCAAATCAAGTCAAACCAAACACTAAAACTCATCTTTGTAAACCACATCCTATGGTGAACAAG
13598299 TCAAATCAAGTCAAACCAAACACTAAAACTCATCTTTGTAAACCACATCCTATGGTGAACAAG
1 TCAAATCAAGTCAAACCAAACACTAAAACTCATCTTTGTAAACCACATCCTATGGTGAACAAG
13598362 AATTAGTTAC
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.43, C:0.25, G:0.10, T:0.22
Consensus pattern (63 bp):
TCAAATCAAGTCAAACCAAACACTAAAACTCATCTTTGTAAACCACATCCTATGGTGAACAAG
Found at i:13599658 original size:5 final size:5
Alignment explanation
Indices: 13599624--13599657 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
13599614 ACTAATGCTA
*
13599624 GACAT GACAT GACAT GACAT GACAT GACAC GACA
1 GACAT GACAT GACAT GACAT GACAT GACAT GACA
13599658 CACATATCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.41, C:0.24, G:0.21, T:0.15
Consensus pattern (5 bp):
GACAT
Found at i:13601057 original size:5 final size:5
Alignment explanation
Indices: 13601044--13601088 Score: 54
Period size: 5 Copynumber: 8.8 Consensus size: 5
13601034 TGAATAGGGA
* * *
13601044 CTTTC CTTTT CTTTT CTTTT CTTTT CTCTT CTCTTT CTCTT CTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CT-TTT CTTTT CTTT
13601089 GTTTTGGTTC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
5 30 0.88
6 4 0.12
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (5 bp):
CTTTT
Found at i:13606068 original size:26 final size:26
Alignment explanation
Indices: 13606008--13606073 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 26
13605998 AACTGTCAGA
*
13606008 AAGCTCATAAAGAGCCAATTTAATGGG
1 AAGCTCAT-AAGAGCCAATATAATGGG
13606035 AAGCTCATGAAGAGCC-ATAT-ATCGGG
1 AAGCTCAT-AAGAGCCAATATAAT-GGG
*
13606061 ATGCTCATAAGAG
1 AAGCTCATAAGAG
13606074 TTAAGGTATG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
25 7 0.20
26 13 0.37
27 15 0.43
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.21
Consensus pattern (26 bp):
AAGCTCATAAGAGCCAATATAATGGG
Found at i:13611772 original size:22 final size:22
Alignment explanation
Indices: 13611747--13611788 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
13611737 CGTTGACGAG
13611747 TTCCACACACGAGCAGCCTATA
1 TTCCACACACGAGCAGCCTATA
*
13611769 TTCCACACACGAGTAGCCTA
1 TTCCACACACGAGCAGCCTA
13611789 CAATCGGTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.31, C:0.36, G:0.14, T:0.19
Consensus pattern (22 bp):
TTCCACACACGAGCAGCCTATA
Found at i:13612542 original size:25 final size:22
Alignment explanation
Indices: 13612488--13612542 Score: 56
Period size: 25 Copynumber: 2.3 Consensus size: 22
13612478 TTTCGGCTAG
13612488 AGAAGAAAAGAAGGAGAAAAGA
1 AGAAGAAAAGAAGGAGAAAAGA
* *
13612510 AAATAGAAGAAGAGAGGAGAAGAGA
1 AGA-AGAA-AAGA-AGGAGAAAAGA
13612535 AGGAAGAA
1 A-GAAGAA
13612543 TTCGGCACTC
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 2 0.08
23 4 0.15
24 4 0.15
25 15 0.58
26 1 0.04
ACGTcount: A:0.64, C:0.00, G:0.35, T:0.02
Consensus pattern (22 bp):
AGAAGAAAAGAAGGAGAAAAGA
Found at i:13614062 original size:22 final size:21
Alignment explanation
Indices: 13614032--13614078 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
13614022 CATAAAATAT
*
13614032 AAATTTATAAAAATATATTACA
1 AAATCTATAAAAATATATTA-A
* *
13614054 AAATCTATAAATATGTATTAA
1 AAATCTATAAAAATATATTAA
13614075 AAAT
1 AAAT
13614079 ATATTATAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.36
Consensus pattern (21 bp):
AAATCTATAAAAATATATTAA
Found at i:13614083 original size:11 final size:11
Alignment explanation
Indices: 13614039--13614089 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
13614029 TATAAATTTA
13614039 TAAAAATATAT
1 TAAAAATATAT
*
13614050 TACAAAATCTA-
1 TA-AAAATATAT
* *
13614061 TAAATATGTAT
1 TAAAAATATAT
13614072 TAAAAATATAT
1 TAAAAATATAT
13614083 TATAAAA
1 TA-AAAA
13614090 ATTGTATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
10 6 0.19
11 15 0.47
12 11 0.34
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (11 bp):
TAAAAATATAT
Found at i:13614147 original size:22 final size:20
Alignment explanation
Indices: 13614121--13614184 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 20
13614111 TAAAACATAT
13614121 ATTATTAAAATCTATATTATA
1 ATTATTAAAAT-TATATTATA
*
13614142 ATT-TATGAAATTATATTATA
1 ATTAT-TAAAATTATATTATA
**
13614162 AAAATTATAAATATATATTATA
1 ATTATTA-AAAT-TATATTATA
13614184 A
1 A
13614185 AAACTATAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
20 12 0.34
21 13 0.37
22 10 0.29
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (20 bp):
ATTATTAAAATTATATTATA
Found at i:13614156 original size:20 final size:20
Alignment explanation
Indices: 13614124--13614185 Score: 65
Period size: 22 Copynumber: 3.0 Consensus size: 20
13614114 AACATATATT
*
13614124 ATTA-AAATCTATATTATAA
1 ATTATAAATATATATTATAA
*
13614143 TTTATGAAAT-TATATTATAAAA
1 ATTAT-AAATATATATTAT--AA
13614165 ATTATAAATATATATTATAA
1 ATTATAAATATATATTATAA
13614185 A
1 A
13614186 AACTATAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
19 3 0.08
20 11 0.31
21 8 0.22
22 14 0.39
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (20 bp):
ATTATAAATATATATTATAA
Found at i:13614192 original size:22 final size:22
Alignment explanation
Indices: 13614149--13614202 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
13614139 ATAATTTATG
*
13614149 AAAT-TATATTATAAAAATTAT
1 AAATATATATTATAAAAACTAT
13614170 AAATATATATTATAAAAACTAT
1 AAATATATATTATAAAAACTAT
*
13614192 AAATACATATT
1 AAATATATATT
13614203 TTTATAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
21 4 0.13
22 26 0.87
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (22 bp):
AAATATATATTATAAAAACTAT
Found at i:13614219 original size:22 final size:23
Alignment explanation
Indices: 13614153--13614223 Score: 67
Period size: 22 Copynumber: 3.1 Consensus size: 23
13614143 TTTATGAAAT
*
13614153 TATATTATAAAA-ATTATAAATA
1 TATATTATAAAATATTATACATA
*
13614175 TATATTATAAAAACTATAAATACATA
1 TATATTAT-AAAA-TAT-TATACATA
*
13614201 T-TTTTATAAAATATTATAC-TA
1 TATATTATAAAATATTATACATA
13614222 TA
1 TA
13614224 ACGACTTACA
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
21 3 0.08
22 12 0.30
23 7 0.17
24 4 0.10
25 7 0.17
26 7 0.17
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (23 bp):
TATATTATAAAATATTATACATA
Found at i:13616300 original size:42 final size:41
Alignment explanation
Indices: 13616184--13616334 Score: 124
Period size: 42 Copynumber: 3.6 Consensus size: 41
13616174 TACCAATGTC
** * *
13616184 ATATCCCAGATATGGTCTTACATGTAATCTCGTATCGATGCCA
1 ATATCCCAGATATGGTCTTACA-CAAATCTCATATCGAT-ACA
* * * *
13616227 ATAGCCCA-ACTATAGTCTTACACGAAATCTCACATCGATACT
1 ATATCCCAGA-TATGGTCTTACAC-AAATCTCATATCGATACA
* ** *
13616269 ATATCCCAGATATGGTCTTACACAAAGTCTCATATTGACGCC
1 ATATCCCAGATATGGTCTTACACAAA-TCTCATATCGATACA
* *
13616311 ATATCCCAAATATGTTCTTACACA
1 ATATCCCAGATATGGTCTTACACA
13616335 TAGTCTCGGT
Statistics
Matches: 87, Mismatches: 17, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
41 3 0.03
42 53 0.61
43 31 0.36
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.30
Consensus pattern (41 bp):
ATATCCCAGATATGGTCTTACACAAATCTCATATCGATACA
Found at i:13619378 original size:40 final size:40
Alignment explanation
Indices: 13619284--13619504 Score: 204
Period size: 40 Copynumber: 5.5 Consensus size: 40
13619274 TATTCGAATG
* *
13619284 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGTTAGGTGACT
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTA-GTGACT
* * *
13619325 ATAAT-CGGACTAAGATCCAAAGGCATTTGTGCGAGTTG-CT
1 AT-ATCCGGGCTAAGATCCGAAGGCATTTGTGCTAG-TGACT
* *
13619365 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
* * *
13619405 ATATCCGGGCTAAG-TCCCGAAGGCACTTATGCTAGTGACC
1 ATATCCGGGCTAAGAT-CCGAAGGCATTTGTGCTAGTGACT
* * * **
13619445 ATATCCGGGCTAAGACCCGAAGGC-CTTGTGCAAGTGGTT
1 ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
13619484 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGAT-CCGAAG
13619505 ATTACTTGGG
Statistics
Matches: 150, Mismatches: 22, Indels: 19
0.79 0.12 0.10
Matches are distributed among these distances:
37 1 0.01
38 12 0.08
39 19 0.13
40 89 0.59
41 26 0.17
42 3 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGATCCGAAGGCATTTGTGCTAGTGACT
Found at i:13619455 original size:80 final size:79
Alignment explanation
Indices: 13619284--13619504 Score: 234
Period size: 80 Copynumber: 2.8 Consensus size: 79
13619274 TATTCGAATG
* * * *
13619284 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGTTAGGTGACTATAAT-CGGACTAAGAT-CCAAAG
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTA-GTGACTAT-ATCCGGGCTAAG-TCCCGAAG
* * *
13619347 GCATTTGTGCGAGTTGCT
62 GCACTTATGCGAGTTGCC
*
13619365 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGC-TTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCA
*
13619430 CTTATGCTAG-TGACC
65 CTTATGCGAGTTG-CC
* * ** *
13619445 ATATCCGGGCTAAGACCCGAAGGCCTTGTGCAAGTGGTTATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAG
13619505 ATTACTTGGG
Statistics
Matches: 121, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
78 14 0.12
79 21 0.17
80 55 0.45
81 31 0.26
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (79 bp):
ATATCCGGGCTAAGACCCGAAGGCTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGCAC
TTATGCGAGTTGCC
Found at i:13620450 original size:29 final size:28
Alignment explanation
Indices: 13620383--13620450 Score: 73
Period size: 29 Copynumber: 2.4 Consensus size: 28
13620373 ATGAAAGCTT
* *
13620383 GTATATGAATGTGATTTAGGACTTATCG
1 GTATATGAATATGATTTAGGACTAATCG
* * *
13620411 GTCATACGAATATGATTTAGGCCTAATGG
1 GT-ATATGAATATGATTTAGGACTAATCG
13620440 GCTATATGAAT
1 G-TATATGAAT
13620451 GAGATTGGGC
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
28 2 0.06
29 29 0.91
30 1 0.03
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.35
Consensus pattern (28 bp):
GTATATGAATATGATTTAGGACTAATCG
Found at i:13620456 original size:29 final size:29
Alignment explanation
Indices: 13620384--13620474 Score: 71
Period size: 29 Copynumber: 3.2 Consensus size: 29
13620374 TGAAAGCTTG
* * * *
13620384 TATATGAATGTGATTTAGGACTTATCGG-
1 TATATGAATGAGATTTAGGCCTAATGGGC
*
13620412 TCATACGAAT-ATGATTTAGGCCTAATGGGC
1 T-ATATGAATGA-GATTTAGGCCTAATGGGC
* *
13620442 TATATGAATGAGA-TTGGGCCTAGTGGGC
1 TATATGAATGAGATTTAGGCCTAATGGGC
*
13620470 CATAT
1 TATAT
13620475 TTATATATGT
Statistics
Matches: 50, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
28 18 0.36
29 30 0.60
30 2 0.04
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (29 bp):
TATATGAATGAGATTTAGGCCTAATGGGC
Found at i:13628209 original size:29 final size:29
Alignment explanation
Indices: 13628144--13628209 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 29
13628134 GAAAGCTTGT
* * * *
13628144 ATACAAATGTGATTTGGGCCTAATGGGCC
1 ATACGAATATGATTTGGGCCTAATAGGCA
13628173 ATACGAATATGATTTGGGCCTAATAGGCA
1 ATACGAATATGATTTGGGCCTAATAGGCA
*
13628202 ATATGAAT
1 ATACGAAT
13628210 GAGATGGGGC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (29 bp):
ATACGAATATGATTTGGGCCTAATAGGCA
Found at i:13632371 original size:16 final size:16
Alignment explanation
Indices: 13632350--13632380 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13632340 CTATGCACGC
*
13632350 AAAATATAAAAGACAG
1 AAAATACAAAAGACAG
13632366 AAAATACAAAAGACA
1 AAAATACAAAAGACA
13632381 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:13636081 original size:18 final size:18
Alignment explanation
Indices: 13636054--13636090 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
13636044 CTTGGCCCAT
*
13636054 TGCAGTAACAGTAAACAG
1 TGCAGGAACAGTAAACAG
*
13636072 TGCAGGAACAGTGAACAG
1 TGCAGGAACAGTAAACAG
13636090 T
1 T
13636091 ATGCAAGTCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.41, C:0.16, G:0.27, T:0.16
Consensus pattern (18 bp):
TGCAGGAACAGTAAACAG
Found at i:13636440 original size:27 final size:26
Alignment explanation
Indices: 13636409--13636576 Score: 90
Period size: 27 Copynumber: 6.2 Consensus size: 26
13636399 TATAAACATA
13636409 TATCAAAT-AGAGGCAAAACAGTTAATT
1 TATCAAATAAG-GGCAAAACAG-TAATT
* *
13636436 TATCATATAAGGGCGAAACAGTAATTT
1 TATCAAATAAGGGCAAAACAGTAA-TT
* * * **
13636463 TACCACATAAGGGCAAAATAGCCATT
1 TATCAAATAAGGGCAAAACAGTAATT
* * *
13636489 T-TACTACATAAGGGCAAAATAGTCATTT
1 TAT-C-AAATAAGGGCAAAACAGT-AATT
*
13636517 TACCATAA-AAGGGCAAAACAGTAATTT
1 TATCA-AATAAGGGCAAAACAGTAA-TT
* * * * *
13636544 TACCACATCAGAGCAAAACAGTCATTT
1 TATCAAATAAGGGCAAAACAGT-AATT
13636571 TATCAA
1 TATCAA
13636577 TTAGGGGTCT
Statistics
Matches: 109, Mismatches: 22, Indels: 20
0.72 0.15 0.13
Matches are distributed among these distances:
26 9 0.08
27 92 0.84
28 8 0.07
ACGTcount: A:0.43, C:0.17, G:0.14, T:0.26
Consensus pattern (26 bp):
TATCAAATAAGGGCAAAACAGTAATT
Found at i:13636480 original size:54 final size:53
Alignment explanation
Indices: 13636420--13636572 Score: 146
Period size: 54 Copynumber: 2.8 Consensus size: 53
13636410 ATCAAATAGA
* * *
13636420 GGCAAAACAGTTAATTTA-TCATATAAGGGCGAAACAGTAATTTTACCACATAAG
1 GGCAAAACAG-TAATTTACT-ACATAAGGGCAAAACAGTAATTTTACCACAAAAG
* * * * * *
13636474 GGCAAAATAGCCATTTTACTACATAAGGGCAAAATAGTCATTTTACCATAAAAG
1 GGCAAAACAG-TAATTTACTACATAAGGGCAAAACAGTAATTTTACCACAAAAG
* * * *
13636528 GGCAAAACAGTAATTTTACCACATCAGAGCAAAACAGTCATTTTA
1 GGCAAAACAGTAA-TTTACTACATAAGGGCAAAACAGTAATTTTA
13636573 TCAATTAGGG
Statistics
Matches: 80, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
53 1 0.01
54 78 0.98
55 1 0.01
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.25
Consensus pattern (53 bp):
GGCAAAACAGTAATTTACTACATAAGGGCAAAACAGTAATTTTACCACAAAAG
Found at i:13636560 original size:81 final size:81
Alignment explanation
Indices: 13636420--13636572 Score: 216
Period size: 81 Copynumber: 1.9 Consensus size: 81
13636410 ATCAAATAGA
* * * * * *
13636420 GGCAAAACAGTTAATTTATCATATAAGGGCGAAACAGTAATTTTACCACATAAGGGCAAAATAGC
1 GGCAAAACAGTCAATTTACCATAAAAGGGCAAAACAGTAATTTTACCACATAAGAGCAAAACAGC
13636485 CATTTTACTACATAAG
66 CATTTTACTACATAAG
* * * *
13636501 GGCAAAATAGTCATTTTACCATAAAAGGGCAAAACAGTAATTTTACCACATCAGAGCAAAACAGT
1 GGCAAAACAGTCAATTTACCATAAAAGGGCAAAACAGTAATTTTACCACATAAGAGCAAAACAGC
13636566 CATTTTA
66 CATTTTA
13636573 TCAATTAGGG
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 62 1.00
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.25
Consensus pattern (81 bp):
GGCAAAACAGTCAATTTACCATAAAAGGGCAAAACAGTAATTTTACCACATAAGAGCAAAACAGC
CATTTTACTACATAAG
Found at i:13643823 original size:45 final size:46
Alignment explanation
Indices: 13643752--13643844 Score: 152
Period size: 45 Copynumber: 2.0 Consensus size: 46
13643742 ATACAAGGTT
*
13643752 TTTTATCCCAGATTTCAAGAATGATTATACAATAGTTCTAGTGACA
1 TTTTATCCCAAATTTCAAGAATGATTATACAATAGTTCTAGTGACA
* *
13643798 TTTTATCCCAAATTT-TAGAATGATTATACAATAGTTCTAGTGGCA
1 TTTTATCCCAAATTTCAAGAATGATTATACAATAGTTCTAGTGACA
13643843 TT
1 TT
13643845 CTTACCTAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
45 30 0.68
46 14 0.32
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.40
Consensus pattern (46 bp):
TTTTATCCCAAATTTCAAGAATGATTATACAATAGTTCTAGTGACA
Found at i:13660701 original size:42 final size:42
Alignment explanation
Indices: 13660571--13660725 Score: 168
Period size: 42 Copynumber: 3.7 Consensus size: 42
13660561 TACAATACCA
* * * * *
13660571 ATGCCATTTCCCAGATATGGTCTTACATGTAATCTCATATCG
1 ATGCCATATCCCAGATATGGTTTTACACGAAATCTCACATCG
* * * *
13660613 ATGCCAATAGCCCAGCTATGGTTTTACATGAAATCTCATATCG
1 ATGCC-ATATCCCAGATATGGTTTTACACGAAATCTCACATCG
* * *
13660656 ATGCCATATCCTAGATATGATTTTACACGAAGTCTCACA-CTG
1 ATGCCATATCCCAGATATGGTTTTACACGAAATCTCACATC-G
*
13660698 ATGCCATATCCCAGATATGGTCTTACAC
1 ATGCCATATCCCAGATATGGTTTTACAC
13660726 ATAAACTTAG
Statistics
Matches: 96, Mismatches: 15, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
41 1 0.01
42 58 0.60
43 37 0.39
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTTTTACACGAAATCTCACATCG
Found at i:13665071 original size:219 final size:219
Alignment explanation
Indices: 13664692--13665108 Score: 710
Period size: 219 Copynumber: 1.9 Consensus size: 219
13664682 AAGTCAGTGC
* * * *
13664692 CATGACATAAAACCCCTATGTTGTAATATCGGTGTACTACCAGGGATGTCGCGACATGGAACCCC
1 CATGACACAAAACCCCTATGTTGCAATATCGGTGTACTACCAAGGATGTCGCGACATAGAACCCC
* *
13664757 TGTGTCGTGACTTCGCTACAATTTTCTGCAGGGTTGACGCGACCCAATCGCGTAACCCGATGACT
66 TGTGTCGTGACTTCGCTACAATTTTCTGCAAGGTTGACCCGACCCAATCGCGTAACCCGATGACT
*
13664822 TACTCTTTATTTAACCCGATTTTTAACACTTTAAATCCCATTTTATAACCTAAAACCATATATAC
131 TACTCTTCATTTAACCCGATTTTTAACACTTTAAATCCCATTTTATAACCTAAAACCATATATAC
13664887 TTCCTATAAAATTGACAGACGTAT
196 TTCCTATAAAATTGACAGACGTAT
* *
13664911 CATGACACAAAACCCCTATGTTGCAATATCGGTGTACTGCCAAGGATGTCTCGACATAGAACCCC
1 CATGACACAAAACCCCTATGTTGCAATATCGGTGTACTACCAAGGATGTCGCGACATAGAACCCC
* * *
13664976 TGTGTCGTGACTTTGCTACAATTTTCTGGAAGGTTGACCC-AGCCCAATCGCGTAACTCGATGAC
66 TGTGTCGTGACTTCGCTACAATTTTCTGCAAGGTTGACCCGA-CCCAATCGCGTAACCCGATGAC
13665040 TTACTCTTCATTTAACCCGATTTTTAACACTTTAAATCCCATTTTATAACCTAAAACCATATATA
130 TTACTCTTCATTTAACCCGATTTTTAACACTTTAAATCCCATTTTATAACCTAAAACCATATATA
13665105 CTTC
195 CTTC
13665109 TAATTAAAAC
Statistics
Matches: 185, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
218 1 0.01
219 184 0.99
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31
Consensus pattern (219 bp):
CATGACACAAAACCCCTATGTTGCAATATCGGTGTACTACCAAGGATGTCGCGACATAGAACCCC
TGTGTCGTGACTTCGCTACAATTTTCTGCAAGGTTGACCCGACCCAATCGCGTAACCCGATGACT
TACTCTTCATTTAACCCGATTTTTAACACTTTAAATCCCATTTTATAACCTAAAACCATATATAC
TTCCTATAAAATTGACAGACGTAT
Found at i:13669620 original size:27 final size:27
Alignment explanation
Indices: 13669589--13669839 Score: 263
Period size: 27 Copynumber: 9.3 Consensus size: 27
13669579 TTAGTTTACT
13669589 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
13669616 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
13669643 AAATTACCAAAATAACCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
13669670 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
13669697 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
13669724 AAATTACCAAAATACTCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** ***
13669751 AAATTACTGAAATA-CCCTCGACCTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
* **
13669778 AAATTACTAAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
* * * *
13669805 AAATTACCAAAGTACCCTTGATTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
13669832 GAATTACC
1 AAATTACC
13669840 GTTTTACCAT
Statistics
Matches: 191, Mismatches: 31, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
26 3 0.02
27 185 0.97
28 3 0.02
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:13669890 original size:27 final size:27
Alignment explanation
Indices: 13669860--13670731 Score: 1126
Period size: 27 Copynumber: 32.3 Consensus size: 27
13669850 CGATTTACAA
* * *
13669860 AATTATCGAAATACCCTTGTAGGGTAT
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
13669887 AATTACTTAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13669914 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
13669941 AATTATCGCAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13669968 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
13669995 AATTATCGTAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
13670022 AATTACCGGAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13670049 AATTACC-AGAATACCCCTGTAAGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
*
13670076 AATTATC-AGAATACCCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
* *
13670103 AATTACCGAAATACCCCTATAGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
13670130 AATTACC-AGAATACCCCTGTAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
* * *
13670157 AATTATCGGAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13670184 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13670211 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
13670238 AATTACCGGAATACGCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13670265 AATTACC-AGAATACCCCTATAGGGTAG
1 AATTACCGA-AATACCCCTGTAGGGTAG
* *
13670292 AATTACCGGAATACGCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
13670319 AATTACCGGAATACGCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
13670346 AATTACCGGAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
13670373 AATTACTGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13670400 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13670427 AATTA-CGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
13670453 AATTATCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13670480 AATTACCGAAATACCCCTGTAGAGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
13670507 AATTATCGCAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
13670534 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13670561 AATTATCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
13670588 AATTATCGTAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
13670615 AATTACCGTAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
13670642 AATTACCGAAATACCCCTTTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** * *
13670669 AATTACTAAAATAATACCCTTGTAGGGTGG
1 AATTAC--CGA-AATACCCCTGTAGGGTAG
* * * *
13670699 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
13670725 AATTACC
1 AATTACC
13670732 ATTTTGCCCC
Statistics
Matches: 759, Mismatches: 76, Indels: 21
0.89 0.09 0.02
Matches are distributed among these distances:
26 44 0.06
27 691 0.91
28 2 0.00
29 1 0.00
30 21 0.03
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:13671210 original size:22 final size:22
Alignment explanation
Indices: 13671158--13671222 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
13671148 TTAAAGCCTT
* *
13671158 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
13671180 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
13671202 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
13671223 ACGTATTTGT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:13671413 original size:27 final size:27
Alignment explanation
Indices: 13671383--13671482 Score: 94
Period size: 27 Copynumber: 3.7 Consensus size: 27
13671373 TCTGTTAAGC
* *
13671383 GGCTTTGCCACATTATCTGTTTCTGAT
1 GGCTATGCCACAATATCTGTTTCTGAT
* *
13671410 GGCTATGCCACAAATATCT-ATTCTGGT
1 GGCTATGCCAC-AATATCTGTTTCTGAT
* * *
13671437 GGCTCTGCCACAATATCTGTATCTGGT
1 GGCTATGCCACAATATCTGTTTCTGAT
* * *
13671464 GACTCTGTCACAATATCTG
1 GGCTATGCCACAATATCTG
13671483 ATAACTGAGC
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 7 0.11
27 49 0.79
28 6 0.10
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (27 bp):
GGCTATGCCACAATATCTGTTTCTGAT
Found at i:13671657 original size:6 final size:6
Alignment explanation
Indices: 13671619--13671738 Score: 86
Period size: 6 Copynumber: 19.3 Consensus size: 6
13671609 TTGCATTCAC
* * *
13671619 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCT-
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
13671668 ATTACCTG ATACTG ATTCTG ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
*
13671719 ATTCTA ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
13671739 AATGTTTCTT
Statistics
Matches: 91, Mismatches: 11, Indels: 24
0.72 0.09 0.19
Matches are distributed among these distances:
5 8 0.09
6 65 0.71
7 13 0.14
8 5 0.05
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:13671665 original size:31 final size:31
Alignment explanation
Indices: 13671619--13671721 Score: 161
Period size: 31 Copynumber: 3.3 Consensus size: 31
13671609 TTGCATTCAC
13671619 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
*
13671651 ATTCTGATTTTGATTCTATTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * *
13671682 ATTCTGATTCTGATTCTGTTACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
13671713 ATTCTGATT
1 ATTCTGATT
13671722 CTAATTCTAG
Statistics
Matches: 66, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
31 59 0.89
32 7 0.11
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:13671722 original size:31 final size:31
Alignment explanation
Indices: 13671619--13671754 Score: 159
Period size: 31 Copynumber: 4.4 Consensus size: 31
13671609 TTGCATTCAC
*
13671619 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
* *
13671651 ATTCTGATTTTGATTCTATTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* *
13671682 ATTCTGATTCTGATTCTGTTACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* *
13671713 ATTCTGATTCTAATTCTAGTT--CTGATAATG
1 ATTCTGATTCTGATTCT-GTTACCTGATACTG
* *
13671743 TTTCTTATTCTG
1 ATTCTGATTCTG
13671755 TAATGGGTTA
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
30 15 0.16
31 66 0.73
32 10 0.11
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:13672689 original size:14 final size:14
Alignment explanation
Indices: 13672670--13672698 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
13672660 GATCGAGTTG
13672670 CGTAGAAGTATTTT
1 CGTAGAAGTATTTT
13672684 CGTAGAAGTATTTT
1 CGTAGAAGTATTTT
13672698 C
1 C
13672699 AAACATTGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (14 bp):
CGTAGAAGTATTTT
Found at i:13675426 original size:13 final size:13
Alignment explanation
Indices: 13675408--13675528 Score: 84
Period size: 13 Copynumber: 9.3 Consensus size: 13
13675398 TAAATGTGTA
13675408 ATATGAAATGATT
1 ATATGAAATGATT
* * *
13675421 ATATGAGACGGTT
1 ATATGAAATGATT
*
13675434 ATACT--AATGGTT
1 ATA-TGAAATGATT
* *
13675446 ATATAAAATGAAT
1 ATATGAAATGATT
13675459 ATATGAAATGATT
1 ATATGAAATGATT
* * *
13675472 GTTTGAATTGATT
1 ATATGAAATGATT
*
13675485 ATATGGAAATAATT
1 ATAT-GAAATGATT
* *
13675499 ATATGAAGTGTTT
1 ATATGAAATGATT
* *
13675512 ATACGAAATGTTT
1 ATATGAAATGATT
13675525 ATAT
1 ATAT
13675529 AGATAGATAT
Statistics
Matches: 82, Mismatches: 22, Indels: 8
0.73 0.20 0.07
Matches are distributed among these distances:
11 1 0.01
12 8 0.10
13 61 0.74
14 12 0.15
ACGTcount: A:0.40, C:0.02, G:0.17, T:0.40
Consensus pattern (13 bp):
ATATGAAATGATT
Found at i:13676608 original size:20 final size:20
Alignment explanation
Indices: 13676583--13676623 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
13676573 AAGTCAGAAT
*
13676583 AATAAGTGAAGTCTAGGTGG
1 AATAAGTGAAGTCTAAGTGG
13676603 AATAAGTGAAGTCTAAGTGG
1 AATAAGTGAAGTCTAAGTGG
13676623 A
1 A
13676624 TTCTGCCTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.39, C:0.05, G:0.32, T:0.24
Consensus pattern (20 bp):
AATAAGTGAAGTCTAAGTGG
Found at i:13678976 original size:27 final size:26
Alignment explanation
Indices: 13678936--13679027 Score: 96
Period size: 27 Copynumber: 3.5 Consensus size: 26
13678926 GAAGGAAATG
*
13678936 TACTG-TACTAGTGGCTTTGCCACAT
1 TACTGTTACTGGTGGCTTTGCCACAT
*
13678961 ATTCTGTTACTGGTGGCTTTGCCACAT
1 -TACTGTTACTGGTGGCTTTGCCACAT
* ** * *
13678988 GTACTGATACTGGCAGCTTTGCTACGT
1 -TACTGTTACTGGTGGCTTTGCCACAT
13679015 TACTGTTACTGGT
1 TACTGTTACTGGT
13679028 AACTTTGCTG
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 15 0.28
27 39 0.72
ACGTcount: A:0.17, C:0.22, G:0.23, T:0.38
Consensus pattern (26 bp):
TACTGTTACTGGTGGCTTTGCCACAT
Found at i:13679025 original size:26 final size:27
Alignment explanation
Indices: 13678933--13679036 Score: 95
Period size: 27 Copynumber: 3.9 Consensus size: 27
13678923 TAAGAAGGAA
* * *
13678933 ATGTACTG-TACTAGTGGCTTTGCCAC
1 ATGTACTGTTACTGGTAGCTTTGCTAC
* * * *
13678959 ATATTCTGTTACTGGTGGCTTTGCCAC
1 ATGTACTGTTACTGGTAGCTTTGCTAC
* *
13678986 ATGTACTGATACTGGCAGCTTTGCTAC
1 ATGTACTGTTACTGGTAGCTTTGCTAC
* *
13679013 GT-TACTGTTACTGGTAACTTTGCT
1 ATGTACTGTTACTGGTAGCTTTGCT
13679037 GCTATATTAT
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
26 25 0.39
27 39 0.61
ACGTcount: A:0.18, C:0.21, G:0.22, T:0.38
Consensus pattern (27 bp):
ATGTACTGTTACTGGTAGCTTTGCTAC
Found at i:13684376 original size:26 final size:26
Alignment explanation
Indices: 13684305--13684377 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
13684295 ATACTGATAG
* *
13684305 TGGCAGCTTTGCTGCGTTACTATTAC
1 TGGCAGCTTTGCTGCGATATTATTAC
* * *
13684331 TGGCAGCTTTGTTGTGATATTATTTC
1 TGGCAGCTTTGCTGCGATATTATTAC
13684357 TGGCAGCTTTGCTGCGATATT
1 TGGCAGCTTTGCTGCGATATT
13684378 GGTGTGTTGG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.15, C:0.18, G:0.25, T:0.42
Consensus pattern (26 bp):
TGGCAGCTTTGCTGCGATATTATTAC
Found at i:13688490 original size:17 final size:18
Alignment explanation
Indices: 13688462--13688517 Score: 62
Period size: 17 Copynumber: 3.2 Consensus size: 18
13688452 ATTCTTATAC
*
13688462 TTATATTTTTAATTTTTT
1 TTATACTTTTAATTTTTT
*
13688480 TTATA-TTTTAAATTTTT
1 TTATACTTTTAATTTTTT
* *
13688497 ATATACTTTT-ATTATTT
1 TTATACTTTTAATTTTTT
13688514 TTAT
1 TTAT
13688518 TTTGCTATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
17 23 0.72
18 9 0.28
ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71
Consensus pattern (18 bp):
TTATACTTTTAATTTTTT
Found at i:13688561 original size:18 final size:18
Alignment explanation
Indices: 13688462--13688561 Score: 55
Period size: 17 Copynumber: 5.5 Consensus size: 18
13688452 ATTCTTATAC
*
13688462 TTATATTTTTAATTTTTT
1 TTATATTTTTTATTTTTT
* *
13688480 TTATA-TTTTAAATTTTT
1 TTATATTTTTTATTTTTT
*
13688497 ATATACTTTTATTATTTTTAT
1 TTATA-TTTT-TTATTTTT-T
* *
13688518 TT-TGCTATTTCTATTTTTT
1 TTAT-AT-TTTTTATTTTTT
* *
13688537 TTCT-TTTTTTATATTTT
1 TTATATTTTTTATTTTTT
13688554 TTAT-TTTT
1 TTATATTTT
13688562 ACTATTATCA
Statistics
Matches: 65, Mismatches: 10, Indels: 15
0.72 0.11 0.17
Matches are distributed among these distances:
17 32 0.49
18 6 0.09
19 6 0.09
20 16 0.25
21 5 0.08
ACGTcount: A:0.20, C:0.04, G:0.01, T:0.75
Consensus pattern (18 bp):
TTATATTTTTTATTTTTT
Found at i:13688626 original size:13 final size:13
Alignment explanation
Indices: 13688608--13688634 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
13688598 TATTATTGAG
13688608 TTTATTATTATTT
1 TTTATTATTATTT
13688621 TTTATTATTATTT
1 TTTATTATTATTT
13688634 T
1 T
13688635 ATTTTTTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (13 bp):
TTTATTATTATTT
Found at i:13688698 original size:39 final size:37
Alignment explanation
Indices: 13688615--13688710 Score: 97
Period size: 39 Copynumber: 2.5 Consensus size: 37
13688605 GAGTTTATTA
**
13688615 TTATTTTTTATTATTATTTTATTTTTTATCTTTCTTT
1 TTATTTTTTATTATTATTTTATTTTTTATCTTTCAAT
* *
13688652 TTAATTTTGTT-TTAGTTGTTTTATTTTTTTTCTCTTCAAT
1 TT-ATTTT-TTATTA-TTATTTTATTTTTTATCT-TTCAAT
*
13688692 TTA-TTTTCATTATTATTTT
1 TTATTTTTTATTATTATTTT
13688711 TTGAAAGATT
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
37 9 0.19
38 14 0.29
39 19 0.40
40 6 0.12
ACGTcount: A:0.17, C:0.06, G:0.03, T:0.74
Consensus pattern (37 bp):
TTATTTTTTATTATTATTTTATTTTTTATCTTTCAAT
Found at i:13689668 original size:12 final size:11
Alignment explanation
Indices: 13689638--13689667 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
13689628 CTATTGTTCT
*
13689638 AAAAAAAGGTG
1 AAAAAAAAGTG
13689649 AAAAAAAAGTG
1 AAAAAAAAGTG
13689660 AAAAAAAA
1 AAAAAAAA
13689668 ATATATATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.17, T:0.07
Consensus pattern (11 bp):
AAAAAAAAGTG
Found at i:13692224 original size:6 final size:6
Alignment explanation
Indices: 13692213--13692291 Score: 81
Period size: 6 Copynumber: 12.8 Consensus size: 6
13692203 TATCATAACT
*
13692213 AGAATC AGAATC AGAATC AGAATC AGAATT AGGTAA-C AGAATC AGAATC
1 AGAATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
* *
13692262 AGTATC AGGTAA-C AGAATC AAAATC AGAAT
1 AGAATC A-G-AATC AGAATC AGAATC AGAAT
13692292 ATGAATGCAA
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
5 4 0.07
6 49 0.80
7 5 0.08
8 3 0.05
ACGTcount: A:0.49, C:0.14, G:0.18, T:0.19
Consensus pattern (6 bp):
AGAATC
Found at i:13692225 original size:18 final size:18
Alignment explanation
Indices: 13692204--13692262 Score: 59
Period size: 18 Copynumber: 3.2 Consensus size: 18
13692194 AAGAAACATT
13692204 ATCATAACTAGAATCAGA
1 ATCATAACTAGAATCAGA
*
13692222 ATCAGAA-TCAGAATCAGA
1 ATCATAACT-AGAATCAGA
*
13692240 ATTAGGTAAC-AGAATCAGA
1 ATCA--TAACTAGAATCAGA
13692259 ATCA
1 ATCA
13692263 GTATCAGGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
17 1 0.03
18 18 0.55
19 12 0.36
20 2 0.06
ACGTcount: A:0.49, C:0.15, G:0.15, T:0.20
Consensus pattern (18 bp):
ATCATAACTAGAATCAGA
Found at i:13692255 original size:25 final size:25
Alignment explanation
Indices: 13692224--13692291 Score: 109
Period size: 25 Copynumber: 2.7 Consensus size: 25
13692214 GAATCAGAAT
*
13692224 CAGAATCAGAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
13692249 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
13692274 CAGAATCAAAATCAGAAT
1 CAGAATCAGAATCAGAAT
13692292 ATGAATGCAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:13692507 original size:67 final size:67
Alignment explanation
Indices: 13692399--13692547 Score: 289
Period size: 67 Copynumber: 2.2 Consensus size: 67
13692389 CAGAAATTAT
13692399 AGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATACGTGGCGAAGCCACCAGATT
1 AGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATACGTGGCGAAGCCACCAGATT
13692464 GC
66 GC
*
13692466 AGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAAGCCACCAGATT
1 AGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATACGTGGCGAAGCCACCAGATT
13692531 GC
66 GC
13692533 AGCGAGGCTGCCAGA
1 AGCGAGGCTGCCAGA
13692548 ACGCTTCCTC
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 81 1.00
ACGTcount: A:0.31, C:0.23, G:0.30, T:0.16
Consensus pattern (67 bp):
AGCGAGGCTGCCAGATATTGTGACGAAGTCACCAGAACAGATATACGTGGCGAAGCCACCAGATT
GC
Found at i:13692519 original size:27 final size:26
Alignment explanation
Indices: 13692477--13692528 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
13692467 GCGAGGCTGC
*
13692477 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
13692503 CAGATATATGTGGCGAAGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
13692529 TTGCAGCGAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.37, C:0.21, G:0.25, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:13692830 original size:27 final size:27
Alignment explanation
Indices: 13692773--13693154 Score: 481
Period size: 27 Copynumber: 14.3 Consensus size: 27
13692763 TGGGCAAAAT
* * * *
13692773 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
13692799 GGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
13692826 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
13692853 GGTAATTCTACCCTATAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
13692880 GATAATTCTACCCTACAGGGGTATTT-
1 GGTAATTCTACCCTACAGGGGTATTTC
*
13692906 TGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
13692933 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
13692960 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
13692987 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
13693014 GGTAATTCTACCCTACAGGGGTA-TTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
13693040 GGTAATTCTACCTTACTA-GGGTATTTT
1 GGTAATTCTACCCTAC-AGGGGTATTTC
* * *
13693067 AGTAATTCTACCCTACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
13693094 GGTAATTTTACAAACTA-AGGGTGT-TTT-
1 GGTAATTCTAC--CCTACAGGG-GTATTTC
*
13693121 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
13693148 AGTAATT
1 GGTAATT
13693155 TCACAATCGA
Statistics
Matches: 312, Mismatches: 33, Indels: 21
0.85 0.09 0.06
Matches are distributed among these distances:
25 5 0.02
26 69 0.22
27 227 0.73
28 6 0.02
29 5 0.02
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:13692961 original size:107 final size:107
Alignment explanation
Indices: 13692799--13693154 Score: 470
Period size: 107 Copynumber: 3.3 Consensus size: 107
13692789 AAGGTATCTC
* * *
13692799 GGTAATTCCACCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTAC
* *
13692864 CCTATAGGGGTATTGCGATAATTCTACCCTACAGGGGTATTT
66 CCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
* *
13692906 TGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTAC
13692971 CCTACAGGGGTATTTC-AGTAATTCTACCCTACAGGGGTATTT
66 CCTACAGGGGTATTTCGA-TAATTCTACCCTACAGGGGTATTT
* * **
13693013 CGGTAATTCTACCCTACAGGGGTA-TTCGGTAATTCTACCTTACTA-GGGTATTTTAGTAATTCT
1 -GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTA-TAGGGGTATTTCGGTAATTCT
* * * * *
13693076 ACCCTACAAGGGTATTTTGGTAATTTTACAAACTA-AGGGTGT-TTT
64 ACCCTACAGGGGTATTTCGATAATTCTAC--CCTACAGGG-GTATTT
*
13693121 GGTAATTCTACCCTATAGGGGTATTTCAGTAATT
1 GGTAATTCTACCCTACAGGGGTATTTCAGTAATT
13693155 TCACAATCGA
Statistics
Matches: 223, Mismatches: 18, Indels: 15
0.87 0.07 0.06
Matches are distributed among these distances:
106 1 0.00
107 177 0.79
108 40 0.18
109 5 0.02
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.36
Consensus pattern (107 bp):
GGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTAC
CCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTT
Found at i:13693031 original size:134 final size:133
Alignment explanation
Indices: 13692773--13693154 Score: 509
Period size: 134 Copynumber: 2.9 Consensus size: 133
13692763 TGGGCAAAAT
* * * * * *
13692773 GGTAATTTTACCCCACAAGGTATCTCGGTAATTCCACCCTACAGGGGTATTTTAGTAATTCTACC
1 GGTAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACC
* *
13692838 CTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTGCGATAATTCTACCCTACAGGGGTA
66 CTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTA
*
13692903 TTT
131 TTC
* * *
13692906 TGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTAC
1 GGTAATTCTACCCTACA-GGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTAC
* *
13692971 CCTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGT
65 CCTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGT
13693036 ATTC
130 ATTC
* ** * *
13693040 GGTAATTCTACCTTACTAGGGTATTTTAGTAATTCTACCCTACAAGGGTATTTTGGTAATTTTAC
1 GGTAATTCTACCCTAC-AGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTAC
* *
13693105 AAACTA-AGGGTGT-TTT-GGTAATTCTACCCTATAGGGGTATTTCAGTAATT
65 --CCTACAGGG-GTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGTAATT
13693155 TCACAATCGA
Statistics
Matches: 218, Mismatches: 26, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
133 14 0.06
134 191 0.88
135 8 0.04
136 5 0.02
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (133 bp):
GGTAATTCTACCCTACAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTGGTAATTCTACC
CTACAGGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTA
TTC
Found at i:13693197 original size:27 final size:27
Alignment explanation
Indices: 13693159--13693250 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
13693149 GTAATTTCAC
* ** *
13693159 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
*
13693186 AATTAAGGGTAAAACAGTAATTCTGTA
1 AATCAAGGGTAAAACAGTAATTCTGTA
* *
13693213 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCAAGGGTAAAACAGTAATTCTGTA
13693240 AATCAAGGGTA
1 AATCAAGGGTA
13693251 CTTTGGTAAT
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 56 1.00
ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCAAGGGTAAAACAGTAATTCTGTA
Found at i:13693233 original size:54 final size:54
Alignment explanation
Indices: 13693159--13693569 Score: 344
Period size: 54 Copynumber: 7.6 Consensus size: 54
13693149 GTAATTTCAC
* * *
13693159 AATCGAGGGTAAAATGGTAATTTTGTAAATTAAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTA
* * * *** * *
13693213 AATCGAGGGTAAAACAGTAATTCTATAAATCAAGGGTACTTTGGTAATT-TTTA
1 AATCGAGGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTA
* ** ** * * ***
13693266 CCAGTCGAGGGT-ATTTCAGTAATTTTACAAATTAGGGGGTATTTTAGTAATT-T-TA
1 --AATCGAGGGTAAAAT-AGTAATTTTGTAAATCA-AGGGTAAAATAGTAATTCTGTA
* * *** * * * *
13693321 CAAACCAGGGGTATTTTAGTAATTTTCTAAATCGAGGGTAAAATGGTAATTCTCTA
1 -AATCGA-GGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTA
* * * * * * **
13693377 AATCAAGGGTAAAATGGTAATTCTATAAATCGAGGGTAGAACGGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTA
* *
13693431 AATCGAGGGTAAAATAGTAATTTTGTAATTCAAGGGTAAAATAGTAACTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTA
* * *
13693485 AATCAAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTA
*
13693539 AATCGAGGGTAAAATGGTAATTTTGTAAATC
1 AATCGAGGGTAAAATAGTAATTTTGTAAATC
13693570 GAGGTTACTT
Statistics
Matches: 287, Mismatches: 62, Indels: 16
0.79 0.17 0.04
Matches are distributed among these distances:
53 3 0.01
54 217 0.76
55 47 0.16
56 20 0.07
ACGTcount: A:0.38, C:0.09, G:0.21, T:0.33
Consensus pattern (54 bp):
AATCGAGGGTAAAATAGTAATTTTGTAAATCAAGGGTAAAATAGTAATTCTGTA
Found at i:13693259 original size:27 final size:27
Alignment explanation
Indices: 13693202--13693587 Score: 103
Period size: 27 Copynumber: 14.2 Consensus size: 27
13693192 GGGTAAAACA
* * ****
13693202 GTAATTCTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCAAGGGTAATTTG
*
13693229 GTAATTCTATAAATCAAGGGTACTTTG
1 GTAATTCTATAAATCAAGGGTAATTTG
* * * *
13693256 GTAATT-TTTACCAGTCGAGGGT-ATTTCA
1 GTAATTCTATA--AATCAAGGGTAATTT-G
* * * * * *
13693284 GTAATTTTACAAATTAGGGGGTATTTTA
1 GTAATTCTATAAATCA-AGGGTAATTTG
* * * * * *
13693312 GTAATTTTACAAACCAGGGGTATTTTA
1 GTAATTCTATAAATCAAGGGTAATTTG
* * * **
13693339 GTAATTTTCTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCAAGGGTAATTTG
* **
13693366 GTAATTCTCTAAATCAAGGGTAAAATG
1 GTAATTCTATAAATCAAGGGTAATTTG
* **
13693393 GTAATTCTATAAATCGAGGGTAGA-ACG
1 GTAATTCTATAAATCAAGGGTA-ATTTG
* * ** *
13693420 GTAATTCTGTAAATCGAGGGTAAAATA
1 GTAATTCTATAAATCAAGGGTAATTTG
* * * ** *
13693447 GTAATTTTGTAATTCAAGGGTAAAATA
1 GTAATTCTATAAATCAAGGGTAATTTG
* * ** *
13693474 GTAACTCTGTAAATCAAGGGTAAAATA
1 GTAATTCTATAAATCAAGGGTAATTTG
* * * ****
13693501 GTAATTTTGTAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCAAGGGTAATTTG
* * **
13693528 GTAATTCTGTAAATCGAGGGTAAAATG
1 GTAATTCTATAAATCAAGGGTAATTTG
* * * * *
13693555 GTAATTTTGTAAATCGAGGTTACTTTG
1 GTAATTCTATAAATCAAGGGTAATTTG
*
13693582 ATAATT
1 GTAATT
13693588 TTACATGTCG
Statistics
Matches: 294, Mismatches: 57, Indels: 16
0.80 0.16 0.04
Matches are distributed among these distances:
26 4 0.01
27 251 0.85
28 34 0.12
29 5 0.02
ACGTcount: A:0.37, C:0.09, G:0.21, T:0.34
Consensus pattern (27 bp):
GTAATTCTATAAATCAAGGGTAATTTG
Found at i:13693358 original size:28 final size:28
Alignment explanation
Indices: 13693228--13693358 Score: 110
Period size: 28 Copynumber: 4.8 Consensus size: 28
13693218 AGGGTAAAAC
* * * *
13693228 AGTAATTCTATAAATC-AAGGGTACTTT
1 AGTAATTTTACAAATCGAGGGGTATTTT
* * * *
13693255 GGTAATTTTTACCAGTCGA-GGGTATTTC
1 AGTAA-TTTTACAAATCGAGGGGTATTTT
*
13693283 AGTAATTTTACAAAT-TAGGGGGTATTTT
1 AGTAATTTTACAAATCGA-GGGGTATTTT
*
13693311 AGTAATTTTACAAA-CCAGGGGTATTTT
1 AGTAATTTTACAAATCGAGGGGTATTTT
13693338 AGTAATTTT-CTAAATCGAGGG
1 AGTAATTTTAC-AAATCGAGGG
13693359 TAAAATGGTA
Statistics
Matches: 83, Mismatches: 14, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
26 2 0.02
27 34 0.41
28 46 0.55
29 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (28 bp):
AGTAATTTTACAAATCGAGGGGTATTTT
Found at i:13693414 original size:81 final size:81
Alignment explanation
Indices: 13693159--13693573 Score: 334
Period size: 81 Copynumber: 5.1 Consensus size: 81
13693149 GTAATTTCAC
* ** * *
13693159 AATCGAGGGTAAAATGGTAATTTTGTAAATTAAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTA
** *
13693224 AAACAGTAATTCTATA
66 AAATGGTAATTCTGTA
* *** * * ** * ** * *
13693240 AATCAAGGGTACTTTGGTAATTTT-TACCAGTCGAGGGT-ATTTCAGTAATTTTACAAATTAGGG
1 AATCGAGGGTAAAATAGTAATTTTGTA--AATCGAGGGTAAAAT-AGTAATTCTGTAAATCA-AG
*** *
13693303 GGTATTTTAGTAATT-T-TA
62 GGTAAAATGGTAATTCTGTA
* * *** * * *
13693321 CAAACCAGGGGTATTTTAGTAATTTTCTAAATCGAGGGTAAAATGGTAATTCTCTAAATCAAGGG
1 -AATCGA-GGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGG
*
13693386 TAAAATGGTAATTCTATA
64 TAAAATGGTAATTCTGTA
* ** * * *
13693404 AATCGAGGGTAGAACGGTAATTCTGTAAATCGAGGGTAAAATAGTAATTTTGTAATTCAAGGGTA
1 AATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTA
* *
13693469 AAATAGTAACTCTGTA
66 AAATGGTAATTCTGTA
* * *
13693485 AATCAAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTA
*
13693550 AAATGGTAATTTTGTA
66 AAATGGTAATTCTGTA
13693566 AATCGAGG
1 AATCGAGG
13693574 TTACTTTGAT
Statistics
Matches: 258, Mismatches: 66, Indels: 20
0.75 0.19 0.06
Matches are distributed among these distances:
80 2 0.01
81 172 0.67
82 50 0.19
83 32 0.12
84 2 0.01
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (81 bp):
AATCGAGGGTAAAATAGTAATTTTGTAAATCGAGGGTAAAATAGTAATTCTGTAAATCAAGGGTA
AAATGGTAATTCTGTA
Found at i:13693588 original size:27 final size:26
Alignment explanation
Indices: 13693538--13693701 Score: 123
Period size: 27 Copynumber: 6.1 Consensus size: 26
13693528 GTAATTCTGT
** * **
13693538 AAATCGAGGGTAAAATGGTAATTTTGT
1 AAATCGAGGGT-ATTTGATAATTTTAC
*
13693565 AAATCGAGGTTACTTTGATAATTTTAC
1 AAATCGAGGGTA-TTTGATAATTTTAC
** *
13693592 ATGTCGAGGGTATTTTAGTAATTTTAC
1 AAATCGAGGGTATTTGA-TAATTTTAC
*
13693619 AAA-CTGAGGGTATTTCGATAATTTTGC
1 AAATC-GAGGGTATTT-GATAATTTTAC
* * *
13693646 AAATCGAGGATATTTGGGTAATTTTAT
1 AAATCGAGGGTATTT-GATAATTTTAC
* *
13693673 AAACCGAGGGTACTTTGGTAATTTTAC
1 AAATCGAGGGTA-TTTGATAATTTTAC
13693700 AA
1 AA
13693702 CTGAGGATAT
Statistics
Matches: 109, Mismatches: 22, Indels: 12
0.76 0.15 0.08
Matches are distributed among these distances:
26 6 0.06
27 98 0.90
28 5 0.05
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (26 bp):
AAATCGAGGGTATTTGATAATTTTAC
Found at i:13693613 original size:54 final size:53
Alignment explanation
Indices: 13693555--13693722 Score: 169
Period size: 54 Copynumber: 3.1 Consensus size: 53
13693545 GGGTAAAATG
* * ** * *
13693555 GTAATTTTGTAAATCGAGGTTACTTTGATAATTTTACATGTCGAGGGTATTTTA
1 GTAATTTTATAAA-CGAGGGTACTTTGATAATTTTACAAATCGAGGATATTTGA
* * *
13693609 GTAATTTTACAAACTGAGGGTA-TTTCGATAATTTTGCAAATCGAGGATATTTGG
1 GTAATTTTATAAAC-GAGGGTACTTT-GATAATTTTACAAATCGAGGATATTTGA
* * *
13693663 GTAATTTTATAAACCGAGGGTACTTTGGTAATTTTACAACT-GAGGATATTTCA
1 GTAATTTTATAAA-CGAGGGTACTTTGATAATTTTACAAATCGAGGATATTTGA
*
13693716 ATAATTT
1 GTAATTT
13693723 GGTAAACTAA
Statistics
Matches: 94, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
53 20 0.21
54 70 0.74
55 4 0.04
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (53 bp):
GTAATTTTATAAACGAGGGTACTTTGATAATTTTACAAATCGAGGATATTTGA
Found at i:13693628 original size:81 final size:80
Alignment explanation
Indices: 13693543--13693707 Score: 181
Period size: 81 Copynumber: 2.0 Consensus size: 80
13693533 TCTGTAAATC
* * * *** *
13693543 GAGGGTAAAAT-GGTAATTTTGTAAATCGAGGTTACTTT-GATAATTTTACATGTCGAGGGTATT
1 GAGGGT-AAATCGATAATTTTGCAAATCGAGGATA-TTTGGATAATTTTACAAACCGAGGGTACT
13693606 TTAGTAATTTTACAAACT
64 TTAGTAATTTTAC-AACT
** * *
13693624 GAGGGTATTTCGATAATTTTGCAAATCGAGGATATTTGGGTAATTTTATAAACCGAGGGTACTTT
1 GAGGGTAAATCGATAATTTTGCAAATCGAGGATATTTGGATAATTTTACAAACCGAGGGTACTTT
*
13693689 GGTAATTTTACAACT
66 AGTAATTTTACAACT
13693704 GAGG
1 GAGG
13693708 ATATTTCAAT
Statistics
Matches: 70, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
80 13 0.19
81 57 0.81
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (80 bp):
GAGGGTAAATCGATAATTTTGCAAATCGAGGATATTTGGATAATTTTACAAACCGAGGGTACTTT
AGTAATTTTACAACT
Found at i:13706343 original size:19 final size:17
Alignment explanation
Indices: 13706315--13706362 Score: 60
Period size: 19 Copynumber: 2.7 Consensus size: 17
13706305 GAAAAAGCTC
* *
13706315 GATAAGTGATAATGTCT
1 GATAAATGATAATGCCT
13706332 GAAATAAATGATAATGCCT
1 G--ATAAATGATAATGCCT
13706351 GATAAATGATAA
1 GATAAATGATAA
13706363 ATGACAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 12 0.44
19 15 0.56
ACGTcount: A:0.46, C:0.06, G:0.19, T:0.29
Consensus pattern (17 bp):
GATAAATGATAATGCCT
Found at i:13715646 original size:21 final size:21
Alignment explanation
Indices: 13715622--13715663 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
13715612 ATTTTCAAAT
*
13715622 TAATTACACATTGATTTGTAA
1 TAATTACACATTAATTTGTAA
* *
13715643 TAATTGCATATTAATTTGTAA
1 TAATTACACATTAATTTGTAA
13715664 ATTTTTGTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.07, G:0.10, T:0.45
Consensus pattern (21 bp):
TAATTACACATTAATTTGTAA
Found at i:13717128 original size:32 final size:32
Alignment explanation
Indices: 13717087--13717167 Score: 117
Period size: 32 Copynumber: 2.5 Consensus size: 32
13717077 TTGAAATTAG
*
13717087 TTTGTTAGATTTTGAAATTATTATGTTTTAAA
1 TTTGTTAGATATTGAAATTATTATGTTTTAAA
* *
13717119 TTTGTTAGATATTGAATTTATTATGTTTTAAG
1 TTTGTTAGATATTGAAATTATTATGTTTTAAA
* *
13717151 CTTGTTGGATATTGAAA
1 TTTGTTAGATATTGAAA
13717168 CAATTAATAA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.30, C:0.01, G:0.16, T:0.53
Consensus pattern (32 bp):
TTTGTTAGATATTGAAATTATTATGTTTTAAA
Found at i:13718615 original size:19 final size:19
Alignment explanation
Indices: 13718591--13718630 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
13718581 ATCCAAACAT
13718591 CAGAAAAGTAAATCATTTC
1 CAGAAAAGTAAATCATTTC
13718610 CAGAAAAGTAAATCATTTC
1 CAGAAAAGTAAATCATTTC
13718629 CA
1 CA
13718631 TAAATCATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.47, C:0.17, G:0.10, T:0.25
Consensus pattern (19 bp):
CAGAAAAGTAAATCATTTC
Found at i:13718644 original size:14 final size:14
Alignment explanation
Indices: 13718618--13718655 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
13718608 TCCAGAAAAG
13718618 TAAATCA-TTTCCA
1 TAAATCATTTTCCA
13718631 TAAATCATTTTCCA
1 TAAATCATTTTCCA
* *
13718645 GAAAACATTTT
1 TAAATCATTTT
13718656 ACTGGCAAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 7 0.32
14 15 0.68
ACGTcount: A:0.39, C:0.18, G:0.03, T:0.39
Consensus pattern (14 bp):
TAAATCATTTTCCA
Found at i:13728418 original size:37 final size:37
Alignment explanation
Indices: 13728368--13728441 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
13728358 TCGACACTGG
13728368 ACTAAAGTGTATAGGACTAAAATATTTAAGGATTTGA
1 ACTAAAGTGTATAGGACTAAAATATTTAAGGATTTGA
13728405 ACTAAAGTGTATAGGACTAAAATATTTAAGGATTTGA
1 ACTAAAGTGTATAGGACTAAAATATTTAAGGATTTGA
13728442 TGAAGTAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.43, C:0.05, G:0.19, T:0.32
Consensus pattern (37 bp):
ACTAAAGTGTATAGGACTAAAATATTTAAGGATTTGA
Found at i:13731226 original size:40 final size:40
Alignment explanation
Indices: 13731168--13731245 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
13731158 TTACACCATG
* *
13731168 TGGGGATAAAATTGACCCACCCAACCCTGCACACCATATA
1 TGGGGATAAAATTAACCCACCCAACCCTACACACCATATA
* *
13731208 TGGGGATATAATTAACCCATCCAACCCTACACACCATA
1 TGGGGATAAAATTAACCCACCCAACCCTACACACCATA
13731246 AGGTACTGCA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.36, C:0.32, G:0.13, T:0.19
Consensus pattern (40 bp):
TGGGGATAAAATTAACCCACCCAACCCTACACACCATATA
Found at i:13737780 original size:16 final size:17
Alignment explanation
Indices: 13737749--13737780 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
13737739 AACAATTTAA
13737749 AATCCCAAACACATATT
1 AATCCCAAACACATATT
13737766 AATCCCAAA-ACATAT
1 AATCCCAAACACATAT
13737781 AATTAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.50, C:0.28, G:0.00, T:0.22
Consensus pattern (17 bp):
AATCCCAAACACATATT
Found at i:13748424 original size:40 final size:40
Alignment explanation
Indices: 13748325--13748515 Score: 242
Period size: 40 Copynumber: 4.8 Consensus size: 40
13748315 TGGATGATAA
* * * * **
13748325 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
13748365 CCGGGC-AAGTCCCAAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
13748404 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* * * *
13748444 CCAGGCTAAGTCCCGAAGGCAATTGTACGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
13748484 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
13748516 AGCTATATCC
Statistics
Matches: 132, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
39 32 0.24
40 98 0.74
41 2 0.02
ACGTcount: A:0.25, C:0.25, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:13752754 original size:40 final size:40
Alignment explanation
Indices: 13752655--13752845 Score: 260
Period size: 40 Copynumber: 4.8 Consensus size: 40
13752645 TGGATGATAA
* * * * **
13752655 CCGGGCTAAGTCCCGAAGGCATCTGCGCTAGTGACTAGTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
*
13752695 CCGGGC-AAGTCCCAAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
13752734 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
* *
13752774 CCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACTCTAA-
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAAT
* *
13752814 CCGGGCTATGTCCCGAAGGCATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
13752846 AGCTATATCC
Statistics
Matches: 136, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 32 0.24
40 102 0.75
41 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.29, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAAT
Found at i:13755366 original size:17 final size:18
Alignment explanation
Indices: 13755344--13755377 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
13755334 TATCCTAACC
13755344 TCCCACAAAC-CACTAAA
1 TCCCACAAACTCACTAAA
*
13755361 TCCCACTAACTCACTAA
1 TCCCACAAACTCACTAA
13755378 CTCTTTCAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.18
Consensus pattern (18 bp):
TCCCACAAACTCACTAAA
Found at i:13756418 original size:55 final size:55
Alignment explanation
Indices: 13756359--13756462 Score: 208
Period size: 55 Copynumber: 1.9 Consensus size: 55
13756349 CATAATTTTG
13756359 TAAATATTATTTGAATCATTCAAACTCATAAAAATAAAATTAATATAGCTAGCCA
1 TAAATATTATTTGAATCATTCAAACTCATAAAAATAAAATTAATATAGCTAGCCA
13756414 TAAATATTATTTGAATCATTCAAACTCATAAAAATAAAATTAATATAGC
1 TAAATATTATTTGAATCATTCAAACTCATAAAAATAAAATTAATATAGC
13756463 ATATTAGCAC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 49 1.00
ACGTcount: A:0.50, C:0.12, G:0.05, T:0.34
Consensus pattern (55 bp):
TAAATATTATTTGAATCATTCAAACTCATAAAAATAAAATTAATATAGCTAGCCA
Found at i:13758878 original size:20 final size:20
Alignment explanation
Indices: 13758833--13758878 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
13758823 GCTAAACATC
* *
13758833 AATTT-AATTAAGTTTAATT
1 AATTTAAATTAAGATTAAGT
13758852 AGA-TTAAATTAAGATTAAGT
1 A-ATTTAAATTAAGATTAAGT
13758872 AATTTAA
1 AATTTAA
13758879 TTATAAGTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (20 bp):
AATTTAAATTAAGATTAAGT
Found at i:13762278 original size:26 final size:26
Alignment explanation
Indices: 13762247--13762354 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
13762237 TGAAATGCCC
*
13762247 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
13762273 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
13762299 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
13762325 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
13762351 ATCA
1 ATCA
13762355 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:13763987 original size:72 final size:72
Alignment explanation
Indices: 13763902--13764069 Score: 223
Period size: 72 Copynumber: 2.3 Consensus size: 72
13763892 TATGTAATGT
* ** *
13763902 GGGCTCGAGTACTGACTTTGTGTATAAACCCATGAGTAACTCGCTGAGCGAGCA-TATCATGTTA
1 GGGCTCGGGTACTGACTTTGTGTATAAACCCATGAGTAACTCAATGAGCGAGCATTA-CATGATA
13763966 ATGCTTTG
65 ATGCTTTG
* * *
13763974 GGGCTCGGGTACTGACTTTGTGTATAAACCTATGAGTAGCTCAATGAGCGGGCATTACATGATAA
1 GGGCTCGGGTACTGACTTTGTGTATAAACCCATGAGTAACTCAATGAGCGAGCATTACATGATAA
13764039 TGCTTTG
66 TGCTTTG
* *
13764046 GGG-TCTGGGTGCTAACTTTGTGTA
1 GGGCTC-GGGTACTGACTTTGTGTA
13764070 CCCAGACCCA
Statistics
Matches: 85, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
71 2 0.02
72 81 0.95
73 2 0.02
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (72 bp):
GGGCTCGGGTACTGACTTTGTGTATAAACCCATGAGTAACTCAATGAGCGAGCATTACATGATAA
TGCTTTG
Found at i:13765667 original size:20 final size:20
Alignment explanation
Indices: 13765642--13765682 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
13765632 AGGACATGGA
*
13765642 CATGTCCCAAGCTACACGGG
1 CATGTCCCAAGCCACACGGG
13765662 CATGTCCCAAGCCACACGGG
1 CATGTCCCAAGCCACACGGG
13765682 C
1 C
13765683 GTGTGTAACC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.24, C:0.39, G:0.24, T:0.12
Consensus pattern (20 bp):
CATGTCCCAAGCCACACGGG
Found at i:13768580 original size:46 final size:46
Alignment explanation
Indices: 13768530--13768705 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
13768520 TGGTTGAGCA
13768530 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
13768576 TCCGAACACGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
13768621 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
13768669 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
13768706 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:13768686 original size:93 final size:93
Alignment explanation
Indices: 13768527--13768698 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
13768517 GGATGGTTGA
* *
13768527 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACACGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACACGTTGAGT
13768592 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
13768620 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACACGTTGAGT
13768685 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
13768699 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACACGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:13776159 original size:46 final size:46
Alignment explanation
Indices: 13776109--13776284 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
13776099 TGGTTGAGCA
13776109 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
13776155 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
13776200 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
13776248 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
13776285 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:13776265 original size:93 final size:93
Alignment explanation
Indices: 13776106--13776277 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
13776096 GGATGGTTGA
* *
13776106 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
13776171 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
13776199 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
13776264 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
13776278 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:13781225 original size:72 final size:71
Alignment explanation
Indices: 13781143--13781330 Score: 225
Period size: 72 Copynumber: 2.6 Consensus size: 71
13781133 TATGTAATGT
* ** *
13781143 GGGTCTGGGTACTGACTTTGTGTATAAACCTGTGAGTAACTCGCTGAGCAAGCA-TATCATGTTA
1 GGGTCCGGGTACTGACTTTGTGTATAAACC-GTGAGTAACTCAATGAGCAAGCATTA-CATGATA
*
13781207 ATGCTTTG
64 ATGCTTTA
* *
13781215 GGGTCCGGGTACTGACTTTGTGTATAAACCCGTGAGTAGCTCAATGAGCAGGCATTACATGATAA
1 GGGTCCGGGTACTGACTTTGTGTATAAA-CCGTGAGTAACTCAATGAGCAAGCATTACATGATAA
13781280 TGCTTTA
65 TGCTTTA
* ** * *
13781287 GGGTCCGAGTGTTGACTTTGTGTACAAATCCGTGAGTAGCTCAA
1 GGGTCCGGGTACTGACTTTGTGTATAAA-CCGTGAGTAACTCAA
13781331 ATGCGGGCAA
Statistics
Matches: 102, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
72 98 0.96
73 4 0.04
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (71 bp):
GGGTCCGGGTACTGACTTTGTGTATAAACCGTGAGTAACTCAATGAGCAAGCATTACATGATAAT
GCTTTA
Found at i:13785025 original size:20 final size:19
Alignment explanation
Indices: 13784982--13785027 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
13784972 GCTATTTTGT
*
13784982 TATGGGCCAACTGTATTGA
1 TATGGGCCAACTGTACTGA
* *
13785001 AATGGGTCCAACTGTGCTGA
1 TATGGG-CCAACTGTACTGA
13785021 TATGGGC
1 TATGGGC
13785028 TAGGCCCAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.24, C:0.17, G:0.30, T:0.28
Consensus pattern (19 bp):
TATGGGCCAACTGTACTGA
Found at i:13804443 original size:24 final size:24
Alignment explanation
Indices: 13804416--13804464 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
13804406 TATTCAGGTG
* *
13804416 TAAATTTTGGTTAGTACCAGTTGA
1 TAAATTTTGGCTAGTACCACTTGA
*
13804440 TAAATTTTGGCTAGTATCACTTGA
1 TAAATTTTGGCTAGTACCACTTGA
13804464 T
1 T
13804465 TTTACCCGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.18, T:0.43
Consensus pattern (24 bp):
TAAATTTTGGCTAGTACCACTTGA
Found at i:13805456 original size:30 final size:30
Alignment explanation
Indices: 13805420--13805483 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 30
13805410 TATTATACTT
13805420 AAATAAGC-CTTTAAATTTTAA-TTAGCACTC
1 AAATAAGCTC-TTAAATTTTAAGTTA-CACTC
* *
13805450 AAATAAGTTCTTAAATTTTAAGTTACATTC
1 AAATAAGCTCTTAAATTTTAAGTTACACTC
13805480 AAAT
1 AAAT
13805484 TATAAGTTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 26 0.87
31 4 0.13
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.39
Consensus pattern (30 bp):
AAATAAGCTCTTAAATTTTAAGTTACACTC
Found at i:13805503 original size:33 final size:33
Alignment explanation
Indices: 13805452--13805518 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 33
13805442 TAGCACTCAA
*
13805452 ATAAGTTCTTAAATTTTAAGTTACATTCAAATT
1 ATAAGTTCTTAAATTTTAAGTTACATCCAAATT
* * *
13805485 ATAAGTTGTT-AATCTTTAATTTGCATCCAAATT
1 ATAAGTTCTTAAAT-TTTAAGTTACATCCAAATT
13805518 A
1 A
13805519 GGAGTATTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
32 3 0.10
33 26 0.90
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.45
Consensus pattern (33 bp):
ATAAGTTCTTAAATTTTAAGTTACATCCAAATT
Found at i:13806884 original size:29 final size:29
Alignment explanation
Indices: 13806842--13806901 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
13806832 GATATTGTAA
13806842 GATGAACAACCATAAGAGGGAAAATAACT
1 GATGAACAACCATAAGAGGGAAAATAACT
13806871 GATGAACAACCATAAGAGGGAAAATAACT
1 GATGAACAACCATAAGAGGGAAAATAACT
13806900 GA
1 GA
13806902 CTTCTTTTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.52, C:0.13, G:0.22, T:0.13
Consensus pattern (29 bp):
GATGAACAACCATAAGAGGGAAAATAACT
Found at i:13814174 original size:13 final size:13
Alignment explanation
Indices: 13814156--13814184 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
13814146 AAAAAATAAT
13814156 AATAAATTAAAAA
1 AATAAATTAAAAA
13814169 AATAAATTAAAAA
1 AATAAATTAAAAA
13814182 AAT
1 AAT
13814185 TGATGCTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (13 bp):
AATAAATTAAAAA
Found at i:13816388 original size:39 final size:39
Alignment explanation
Indices: 13816343--13816501 Score: 282
Period size: 39 Copynumber: 4.1 Consensus size: 39
13816333 TTCAAGACAT
*
13816343 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCATGC
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGC
13816382 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGC
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGC
* *
13816421 TGGAAATGTATCCGGGCTAAAGTCCCGCACGCTTCGTGT
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGC
*
13816460 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTGC
1 TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGC
13816499 TGG
1 TGG
13816502 TAATATAATT
Statistics
Matches: 114, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 114 1.00
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.25
Consensus pattern (39 bp):
TGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGC
Found at i:13820827 original size:40 final size:37
Alignment explanation
Indices: 13820741--13820872 Score: 148
Period size: 35 Copynumber: 3.6 Consensus size: 37
13820731 TTTTCCTTAT
*
13820741 TGAAATACCATACCTACATTT-TTCAACTCGGTATGG-
1 TGAAATACCATACCTACATTTCTT-AACTCAGTATGGA
*
13820777 -GAAATGCCATACCTACATTTCTTAACTCAGTATGGA
1 TGAAATACCATACCTACATTTCTTAACTCAGTATGGA
** *
13820813 TTTGATAATACCATACCTACATTTCACAGCTCAGTATGGA
1 --TGA-AATACCATACCTACATTTCTTAACTCAGTATGGA
13820853 TG--ATACCATACCTACATTTC
1 TGAAATACCATACCTACATTTC
13820873 ACACTTTGCC
Statistics
Matches: 84, Mismatches: 6, Indels: 13
0.82 0.06 0.13
Matches are distributed among these distances:
35 48 0.57
36 2 0.02
38 2 0.02
39 2 0.02
40 30 0.36
ACGTcount: A:0.32, C:0.23, G:0.12, T:0.33
Consensus pattern (37 bp):
TGAAATACCATACCTACATTTCTTAACTCAGTATGGA
Found at i:13824468 original size:40 final size:40
Alignment explanation
Indices: 13824423--13824711 Score: 309
Period size: 41 Copynumber: 7.1 Consensus size: 40
13824413 ACAAAAATTA
* ***
13824423 TAAAAACGAAGCAATAGCGGCG-TTTTACCAAAAACGCCGC
1 TAAAAACGAAGCATTAGCGGCGCTTTT-GGTAAAACGCCGC
* * * * *
13824463 TAAAAAC-AGAGCAATAGCAGCGTTTTTTGTTAAAACGCCTC
1 TAAAAACGA-AGCATTAGCGGCG-CTTTTGGTAAAACGCCGC
* * *
13824504 TAAAAACAGAA-CATTAGCGTCACTTTTGGTAAAACGCCGT
1 TAAAAAC-GAAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
13824544 TAAAAAC-AGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAACGA-AGCATTAGCGGCGCTTTTGGTAAAACGCCGC
*
13824584 TAAAAACCAAAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAA-CGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
*
13824625 TAAAAACCAGAA-CATTAGCGGCGCTTTTGATAAAACGCCGC
1 TAAAAA-C-GAAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
* * *
13824666 TAAAAACCAGAGCATTAGCGGCGCTTTCGATAAAACGCCGC
1 TAAAAACGA-AGCATTAGCGGCGCTTTTGGTAAAACGCCGC
13824707 TAAAA
1 TAAAA
13824712 GTCATATAAT
Statistics
Matches: 217, Mismatches: 20, Indels: 23
0.83 0.08 0.09
Matches are distributed among these distances:
38 1 0.00
39 3 0.01
40 74 0.34
41 130 0.60
42 8 0.04
43 1 0.00
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.20
Consensus pattern (40 bp):
TAAAAACGAAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
Found at i:13824510 original size:41 final size:41
Alignment explanation
Indices: 13824453--13824711 Score: 362
Period size: 41 Copynumber: 6.4 Consensus size: 41
13824443 CGTTTTACCA
* * * *
13824453 AAAACGCCGCTAAAAA-CAGAGCAATAGCAGCGTTTTTTGTT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCG-CTTTTGGT
* * * *
13824494 AAAACGCCTCTAAAAA-CAGAACATTAGCGTCACTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
*
13824534 AAAACGCCGTTAAAAA-CAGAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
*
13824574 AAAACGCCGCTAAAAACCAAAGCATTAGCGGCGCTTTTGGT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
* *
13824615 AAAACGCCGCTAAAAACCAGAACATTAGCGGCGCTTTTGAT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
* *
13824656 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGAT
1 AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
13824697 AAAACGCCGCTAAAA
1 AAAACGCCGCTAAAA
13824712 GTCATATAAT
Statistics
Matches: 197, Mismatches: 20, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
40 56 0.28
41 141 0.72
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.20
Consensus pattern (41 bp):
AAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGT
Found at i:13825213 original size:7 final size:7
Alignment explanation
Indices: 13825203--13825240 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
13825193 AGATTTAAGT
13825203 GTTAGGG
1 GTTAGGG
13825210 GTTAGGG
1 GTTAGGG
13825217 GTTAGGG
1 GTTAGGG
*
13825224 GTTAAGG
1 GTTAGGG
*
13825231 GTGAGGG
1 GTTAGGG
13825238 GTT
1 GTT
13825241 CATGGTTTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.16, C:0.00, G:0.55, T:0.29
Consensus pattern (7 bp):
GTTAGGG
Found at i:13825222 original size:14 final size:14
Alignment explanation
Indices: 13825197--13825240 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
13825187 GGTTTAAGAT
*
13825197 TTAAGTGTTAGGGG
1 TTAAGGGTTAGGGG
*
13825211 TTAGGGGTTAGGGG
1 TTAAGGGTTAGGGG
*
13825225 TTAAGGGTGAGGGG
1 TTAAGGGTTAGGGG
13825239 TT
1 TT
13825241 CATGGTTTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.18, C:0.00, G:0.50, T:0.32
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:13825285 original size:7 final size:7
Alignment explanation
Indices: 13825204--13825300 Score: 52
Period size: 7 Copynumber: 13.6 Consensus size: 7
13825194 GATTTAAGTG
*
13825204 TTAGGGG
1 TTAGGGT
*
13825211 TTAGGGG
1 TTAGGGT
13825218 TTAGGGGT
1 TTA-GGGT
*
13825226 TAAGGG-
1 TTAGGGT
*
13825232 TGAGGGGT
1 TTA-GGGT
* *
13825240 TCATGGT
1 TTAGGGT
*
13825247 TTAGGGC
1 TTAGGGT
* *
13825254 TTATGTT
1 TTAGGGT
*
13825261 TTAAGGT
1 TTAGGGT
*
13825268 TTAAGGT
1 TTAGGGT
*
13825275 TTAGGGA
1 TTAGGGT
13825282 TTAGGAGT
1 TTAGG-GT
13825290 TTAGGGT
1 TTAGGGT
13825297 TTAG
1 TTAG
13825301 ATTAGTTAGT
Statistics
Matches: 70, Mismatches: 16, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
6 2 0.03
7 55 0.79
8 13 0.19
ACGTcount: A:0.20, C:0.02, G:0.41, T:0.37
Consensus pattern (7 bp):
TTAGGGT
Found at i:13825466 original size:22 final size:22
Alignment explanation
Indices: 13825441--13825483 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
13825431 GAGTTATTAT
*
13825441 TTTAAGGTTTATAGA-TTATGGG
1 TTTAAGGATTAT-GATTTATGGG
*
13825463 TTTAGGGATTATGATTTATGG
1 TTTAAGGATTATGATTTATGG
13825484 TTATGTAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 16 0.89
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.47
Consensus pattern (22 bp):
TTTAAGGATTATGATTTATGGG
Found at i:13826083 original size:7 final size:7
Alignment explanation
Indices: 13826073--13826106 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
13826063 AAAATCTTCA
13826073 AAAAAAT
1 AAAAAAT
13826080 AAAAAAT
1 AAAAAAT
13826087 AAAAAAT
1 AAAAAAT
13826094 AAAAAAT
1 AAAAAAT
13826101 AAAAAA
1 AAAAAA
13826107 CTTGAAAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:13826722 original size:16 final size:16
Alignment explanation
Indices: 13826701--13826731 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
13826691 CAAGATCACT
13826701 TATCTGCAGTCTGTTA
1 TATCTGCAGTCTGTTA
13826717 TATCTGCAGTCTGTT
1 TATCTGCAGTCTGTT
13826732 TTTCCCAGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.19, G:0.19, T:0.45
Consensus pattern (16 bp):
TATCTGCAGTCTGTTA
Done.