Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 48 of 295
Found at i:13831602 original size:18 final size:19
Alignment explanation
Indices: 13831558--13831605 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
13831548 ATAAAATATT
* *
13831558 AAATAAATTTTATATTTTA
1 AAATTAATTTTATAGTTTA
* *
13831577 TAACTAATTTTA-AGTTTA
1 AAATTAATTTTATAGTTTA
13831595 AAATTAATTTT
1 AAATTAATTTT
13831606 TATTATATCA
Statistics
Matches: 23, Mismatches: 6, Indels: 1
0.77 0.20 0.03
Matches are distributed among these distances:
18 14 0.61
19 9 0.39
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (19 bp):
AAATTAATTTTATAGTTTA
Found at i:13834418 original size:24 final size:26
Alignment explanation
Indices: 13834391--13834454 Score: 82
Period size: 24 Copynumber: 2.6 Consensus size: 26
13834381 TACAAAATTT
*
13834391 AAAATATTAGTTTTTTAA-AA-GGAA
1 AAAATATTAGTTTTTTAAGAATGAAA
*
13834415 AAAATATT--TTTTTAAAGAATGAAA
1 AAAATATTAGTTTTTTAAGAATGAAA
13834439 AAAATATTAGTTTTTT
1 AAAATATTAGTTTTTT
13834455 TAAATTAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
22 7 0.21
23 2 0.06
24 19 0.58
26 5 0.15
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.42
Consensus pattern (26 bp):
AAAATATTAGTTTTTTAAGAATGAAA
Found at i:13834621 original size:17 final size:18
Alignment explanation
Indices: 13834594--13834627 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
13834584 GAGTATGTTT
13834594 TTTTCTAAATTAATTTTG
1 TTTTCTAAATTAATTTTG
13834612 TTTT-TAAATTAATTTT
1 TTTTCTAAATTAATTTT
13834628 TATAAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.65
Consensus pattern (18 bp):
TTTTCTAAATTAATTTTG
Found at i:13836291 original size:36 final size:35
Alignment explanation
Indices: 13836242--13836346 Score: 93
Period size: 36 Copynumber: 2.9 Consensus size: 35
13836232 CATTCAATTT
13836242 ATCAATTTCATTTAGTAACATTCAATTATTCAGAAGCA
1 ATCAA-TT-ATTTAGTAACA-TCAATTATTCAGAAGCA
* * * ** *
13836280 ATTAGTTATTTAGTAACAATCATTTGCTCAGTAGCA
1 ATCAATTATTTAGTAAC-ATCAATTATTCAGAAGCA
* *
13836316 ATCAATTCTTCAGTAACGATCAATTATTCAG
1 ATCAATTATTTAGTAAC-ATCAATTATTCAG
13836347 TAACAGTCAG
Statistics
Matches: 52, Mismatches: 14, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
36 46 0.88
37 3 0.06
38 3 0.06
ACGTcount: A:0.36, C:0.16, G:0.10, T:0.37
Consensus pattern (35 bp):
ATCAATTATTTAGTAACATCAATTATTCAGAAGCA
Found at i:13836299 original size:18 final size:19
Alignment explanation
Indices: 13836251--13836351 Score: 52
Period size: 18 Copynumber: 5.6 Consensus size: 19
13836241 TATCAATTTC
13836251 ATTTAGTAAC-ATTCAATT
1 ATTTAGTAACAATTCAATT
* *
13836269 ATTCAG-AAGCAATT-AGTT
1 ATTTAGTAA-CAATTCAATT
*
13836287 ATTTAGTAACAA-TCATTT
1 ATTTAGTAACAATTCAATT
** * *
13836305 GCTCAGTAGCAA-TCAATT
1 ATTTAGTAACAATTCAATT
* * *
13836323 CTTCAGTAACGA-TCAATT
1 ATTTAGTAACAATTCAATT
*
13836341 ATTCAGTAACA
1 ATTTAGTAACA
13836352 GTCAGTCATT
Statistics
Matches: 64, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
17 3 0.05
18 56 0.88
19 5 0.08
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.36
Consensus pattern (19 bp):
ATTTAGTAACAATTCAATT
Found at i:13836347 original size:36 final size:35
Alignment explanation
Indices: 13836255--13836366 Score: 89
Period size: 36 Copynumber: 3.1 Consensus size: 35
13836245 AATTTCATTT
* * * *
13836255 AGTAACATTCAATTATTCAGAAGCAATTAGTTATTT
1 AGTAACA-TCAATTATTCAGTAGCAATCAATTATTC
* ** *
13836291 AGTAACAATCATTTGCTCAGTAGCAATCAATTCTTC
1 AGTAAC-ATCAATTATTCAGTAGCAATCAATTATTC
* * * *
13836327 AGTAACGATCAATTATTCAGTAACAGTCAGTCATTC
1 AGTAAC-ATCAATTATTCAGTAGCAATCAATTATTC
13836363 AGTA
1 AGTA
13836367 CTTTTATTTA
Statistics
Matches: 58, Mismatches: 17, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
36 57 0.98
37 1 0.02
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (35 bp):
AGTAACATCAATTATTCAGTAGCAATCAATTATTC
Found at i:13836587 original size:44 final size:44
Alignment explanation
Indices: 13836515--13836609 Score: 122
Period size: 44 Copynumber: 2.2 Consensus size: 44
13836505 CGGAATAATC
*
13836515 CGAAGTAACAGTACGACACACAAGGTGCCTCATCAACTTGAA-GT
1 CGAAGTAACAGTACGACACACAAGGTGCCTCATCAAC-TCAAGGT
** *
13836559 CGAAGTAACAGTACGACACTTATA-GTGCCTCATCGACTCAAGGT
1 CGAAGTAACAGTACGACACACA-AGGTGCCTCATCAACTCAAGGT
13836603 CGAAGTA
1 CGAAGTA
13836610 TCCCTGAACA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
43 3 0.07
44 41 0.91
45 1 0.02
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.20
Consensus pattern (44 bp):
CGAAGTAACAGTACGACACACAAGGTGCCTCATCAACTCAAGGT
Found at i:13837742 original size:19 final size:20
Alignment explanation
Indices: 13837713--13837754 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
13837703 AAAACCTCAA
* *
13837713 TTTCTCCCTTTTTTTCTTTC
1 TTTCTCCCTTTCTTTCCTTC
13837733 TTTC-CCCTTTCTTTCCTTC
1 TTTCTCCCTTTCTTTCCTTC
13837752 TTT
1 TTT
13837755 TCTTCTCTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 16 0.80
20 4 0.20
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTCTCCCTTTCTTTCCTTC
Found at i:13837804 original size:19 final size:19
Alignment explanation
Indices: 13837777--13837831 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
13837767 TCGTTTCATA
*
13837777 TTCTGTTTCTTTGTTTCTT
1 TTCTATTTCTTTGTTTCTT
*
13837796 TTCTATTTCTTTATTTCTT
1 TTCTATTTCTTTGTTTCTT
13837815 TT-TATTTCATTTGTTTC
1 TTCTATTTC-TTTGTTTC
13837832 ATTTGCTTTA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
18 6 0.19
19 26 0.81
ACGTcount: A:0.07, C:0.15, G:0.05, T:0.73
Consensus pattern (19 bp):
TTCTATTTCTTTGTTTCTT
Found at i:13837875 original size:21 final size:21
Alignment explanation
Indices: 13837845--13837885 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
13837835 TGCTTTATAA
*
13837845 TAATATTATAATAATATAATT
1 TAATAATATAATAATATAATT
* *
13837866 TAATAATATACTTATATAAT
1 TAATAATATAATAATATAAT
13837886 AAGTAAACAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (21 bp):
TAATAATATAATAATATAATT
Found at i:13837884 original size:13 final size:13
Alignment explanation
Indices: 13837841--13837886 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
13837831 CATTTGCTTT
13837841 ATAATAATATTATA
1 ATAAT-ATATTATA
13837855 ATAATATAATT-TA
1 ATAATAT-ATTATA
13837868 ATAATATACTTAT-
1 ATAATATA-TTATA
13837881 ATAATA
1 ATAATA
13837887 AGTAAACATA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
12 1 0.03
13 19 0.66
14 9 0.31
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.43
Consensus pattern (13 bp):
ATAATATATTATA
Found at i:13838825 original size:62 final size:62
Alignment explanation
Indices: 13838728--13838853 Score: 234
Period size: 62 Copynumber: 2.0 Consensus size: 62
13838718 CTCGACACTG
13838728 GAGTCCAGTTCTTGCCTAAACATGTTGCAAATGTTGAACTTGAGCATGCTACAGGTCCTGTT
1 GAGTCCAGTTCTTGCCTAAACATGTTGCAAATGTTGAACTTGAGCATGCTACAGGTCCTGTT
* *
13838790 GAGTCCAGTTCTTGCCTAAGCATGTTGCAAATGTTGAACTTGAGCATGTTACAGGTCCTGTT
1 GAGTCCAGTTCTTGCCTAAACATGTTGCAAATGTTGAACTTGAGCATGCTACAGGTCCTGTT
13838852 GA
1 GA
13838854 TGTTGTAAAA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.33
Consensus pattern (62 bp):
GAGTCCAGTTCTTGCCTAAACATGTTGCAAATGTTGAACTTGAGCATGCTACAGGTCCTGTT
Found at i:13840039 original size:14 final size:13
Alignment explanation
Indices: 13840015--13840045 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
13840005 ACCAAAATTT
13840015 GAAAGAAAAGAAA
1 GAAAGAAAAGAAA
13840028 GAAAGAAAAAGAAA
1 GAAAG-AAAAGAAA
13840042 GAAA
1 GAAA
13840046 AGGGAAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (13 bp):
GAAAGAAAAGAAA
Found at i:13842360 original size:11 final size:11
Alignment explanation
Indices: 13842346--13842398 Score: 54
Period size: 11 Copynumber: 4.9 Consensus size: 11
13842336 AGATAAATAT
13842346 TATTTTATTAA
1 TATTTTATTAA
*
13842357 TATTTTAATAA
1 TATTTTATTAA
* * *
13842368 GATATT-TTAT
1 TATTTTATTAA
*
13842378 TATTTTATTAT
1 TATTTTATTAA
13842389 TATTTTATTA
1 TATTTTATTA
13842399 GCATATAAAG
Statistics
Matches: 34, Mismatches: 7, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
10 6 0.18
11 28 0.82
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:13844298 original size:46 final size:46
Alignment explanation
Indices: 13844231--13844395 Score: 213
Period size: 46 Copynumber: 3.6 Consensus size: 46
13844221 GTTCTCTGAA
* *
13844231 ATGAAATGTGTAAGACCATGGTTGAAAGATACCAGGGCAGCGTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCAGGGCAACGTGAC
*
13844277 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCAGGGCAACGTGAC
* ** * * *
13844323 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGACAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCAGGGCAACGTGAC
** * *
13844369 AAAAAATGAGTAAGACCATAGTTGAAA
1 ATGAAATGTGTAAGACCATGGTTGAAA
13844396 CACACTATGG
Statistics
Matches: 106, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 106 1.00
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.20
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCAGGGCAACGTGAC
Found at i:13847327 original size:21 final size:21
Alignment explanation
Indices: 13847301--13847342 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
13847291 TATATGCCAA
13847301 GATTGAAATAAAATAAAAATC
1 GATTGAAATAAAATAAAAATC
13847322 GATTGAAATAAAATAAAAATC
1 GATTGAAATAAAATAAAAATC
13847343 TACTTATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.62, C:0.05, G:0.10, T:0.24
Consensus pattern (21 bp):
GATTGAAATAAAATAAAAATC
Found at i:13851020 original size:3 final size:3
Alignment explanation
Indices: 13851012--13851042 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
13851002 AAAGCCAATT
13851012 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
13851043 AAGAGTGATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:13851140 original size:17 final size:16
Alignment explanation
Indices: 13851118--13851149 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
13851108 AAAGATTTTG
13851118 TAAATATATGTTAAATA
1 TAAATATAT-TTAAATA
13851135 TAAATATATTTAAAT
1 TAAATATATTTAAAT
13851150 TTTTTAAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (16 bp):
TAAATATATTTAAATA
Found at i:13854630 original size:6 final size:6
Alignment explanation
Indices: 13854619--13854650 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
13854609 TGACACTTTT
13854619 AAATTA AAATTA AAATTA AAATTA AAATTA AA
1 AAATTA AAATTA AAATTA AAATTA AAATTA AA
13854651 TTATAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
AAATTA
Found at i:13855474 original size:31 final size:31
Alignment explanation
Indices: 13855438--13855498 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
13855428 GTTACAAAAT
* *
13855438 AGTCATTGAATTATTCGAAAGTTTTTATTTA
1 AGTCATTAAACTATTCGAAAGTTTTTATTTA
* *
13855469 AGTCATTAAACTATTTGAAATTTTTTATTT
1 AGTCATTAAACTATTCGAAAGTTTTTATTT
13855499 GAATCACTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.51
Consensus pattern (31 bp):
AGTCATTAAACTATTCGAAAGTTTTTATTTA
Found at i:13857644 original size:40 final size:40
Alignment explanation
Indices: 13857589--13857806 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
13857579 TGGATGATAA
* * *
13857589 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
13857629 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
13857669 CCGGGTTAAGTCTCGAAGGCATTTGTGTGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
13857709 CCGGGCTAAGTCCCGAAGGTATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * *
13857749 CCGGGCTATGTCTCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
13857789 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
13857807 TACCTGACTT
Statistics
Matches: 155, Mismatches: 21, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
39 15 0.10
40 140 0.90
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:13865769 original size:40 final size:40
Alignment explanation
Indices: 13865711--13865928 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
13865701 TGGATGATAA
* * *
13865711 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
* *
13865751 CCGGGCTAAGTCCTGAAGGCATTTGTGCGGGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
13865791 CCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
13865831 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTACAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* ** * *
13865871 CCGGGCTATGTCATGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
13865911 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
13865929 TACCTGACTT
Statistics
Matches: 155, Mismatches: 21, Indels: 5
0.86 0.12 0.03
Matches are distributed among these distances:
39 14 0.09
40 141 0.91
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:13868628 original size:28 final size:28
Alignment explanation
Indices: 13868596--13868649 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
13868586 TCTATATAAA
* *
13868596 TAATTTTATTTTAATAGTAATACAAATT
1 TAATTTTAATTTAATACTAATACAAATT
*
13868624 TAATTTTAATTTGATACTAATACAAA
1 TAATTTTAATTTAATACTAATACAAA
13868650 ATTTCACCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (28 bp):
TAATTTTAATTTAATACTAATACAAATT
Found at i:13879160 original size:16 final size:17
Alignment explanation
Indices: 13879139--13879199 Score: 52
Period size: 17 Copynumber: 3.4 Consensus size: 17
13879129 TTATACTTAA
13879139 TAATAT-AATAAAATAT
1 TAATATAAATAAAATAT
13879155 TAATATAAATAAATATAATT
1 TAATATAAATAAA-AT-A-T
* *
13879175 TACTATTTCAATAAAATAT
1 TA--ATATAAATAAAATAT
13879194 TAATAT
1 TAATAT
13879200 CATAATTTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 11
0.72 0.06 0.22
Matches are distributed among these distances:
16 6 0.17
17 9 0.25
18 2 0.06
19 4 0.11
20 4 0.11
21 2 0.06
22 9 0.25
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
TAATATAAATAAAATAT
Found at i:13879204 original size:16 final size:16
Alignment explanation
Indices: 13879139--13879204 Score: 51
Period size: 16 Copynumber: 3.7 Consensus size: 16
13879129 TTATACTTAA
13879139 TAATATAATAAAATAT
1 TAATATAATAAAATAT
13879155 TAATATAAATAAATATAATT
1 TAATAT-AATAAA-AT-A-T
*
13879175 TACTATTTCAATAAAATAT
1 TA--ATAT-AATAAAATAT
*
13879194 TAATATCATAA
1 TAATATAATAA
13879205 TTTTATTTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
16 10 0.25
17 9 0.22
18 2 0.05
19 4 0.10
20 4 0.10
21 2 0.05
22 9 0.22
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (16 bp):
TAATATAATAAAATAT
Found at i:13891103 original size:37 final size:37
Alignment explanation
Indices: 13891062--13891143 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 37
13891052 ACTTTTAAGC
*
13891062 TTATATTTCAATCAAGTTAGAGTGGTTTAGAGTGTTT
1 TTATAGTTCAATCAAGTTAGAGTGGTTTAGAGTGTTT
*** * *
13891099 TTATAGTTGTTTTAATTTAGAGTGGTTTAGAGTGTTT
1 TTATAGTTCAATCAAGTTAGAGTGGTTTAGAGTGTTT
13891136 TTATAGTT
1 TTATAGTT
13891144 GTTTTAATTA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.24, C:0.02, G:0.22, T:0.51
Consensus pattern (37 bp):
TTATAGTTCAATCAAGTTAGAGTGGTTTAGAGTGTTT
Found at i:13891144 original size:37 final size:37
Alignment explanation
Indices: 13891078--13891152 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
13891068 TTCAATCAAG
13891078 TTAGAGTGGTTTAGAGTGTTTTTATAGTTGTTTTAAT
1 TTAGAGTGGTTTAGAGTGTTTTTATAGTTGTTTTAAT
13891115 TTAGAGTGGTTTAGAGTGTTTTTATAGTTGTTTTAAT
1 TTAGAGTGGTTTAGAGTGTTTTTATAGTTGTTTTAAT
13891152 T
1 T
13891153 ATGTTTATAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.21, C:0.00, G:0.24, T:0.55
Consensus pattern (37 bp):
TTAGAGTGGTTTAGAGTGTTTTTATAGTTGTTTTAAT
Found at i:13893183 original size:76 final size:76
Alignment explanation
Indices: 13893049--13893236 Score: 218
Period size: 76 Copynumber: 2.5 Consensus size: 76
13893039 AATGAATAGT
*** * ** * **
13893049 GAAAACCATCATTTTCGGGCAATTCGGGGTGGTAAGTCATTATTGTCAGGCAATCCAGGATGGTA
1 GAAAACCATCATAGCCGGGCAATCCAAGGTGGTAAGTCATTATTGTCAGGCAACCCAGGATGACA
13893114 GAATTGAATGA
66 GAATTGAATGA
* * *
13893125 GAAAACCATCGTAGCCGGGCAATCCGAA-GTGGTAAGTCATTATTGT-TGAGCAACCCAGGGTGA
1 GAAAACCATCATAGCCGGGCAATCC-AAGGTGGTAAGTCATTATTGTCAG-GCAACCCAGGATGA
**
13893188 CATTATTGAATGA
64 CAGAATTGAATGA
13893201 GAAAACCATCATAGCCGGGCAATCCAAGGTGGTAAG
1 GAAAACCATCATAGCCGGGCAATCCAAGGTGGTAAG
13893237 CCATCGTTGC
Statistics
Matches: 94, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
75 3 0.03
76 91 0.97
ACGTcount: A:0.32, C:0.18, G:0.27, T:0.23
Consensus pattern (76 bp):
GAAAACCATCATAGCCGGGCAATCCAAGGTGGTAAGTCATTATTGTCAGGCAACCCAGGATGACA
GAATTGAATGA
Found at i:13893517 original size:24 final size:24
Alignment explanation
Indices: 13893486--13893533 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
13893476 TTTCAGATTT
13893486 ATAGGAATATTGTTGAGTGATATA
1 ATAGGAATATTGTTGAGTGATATA
13893510 ATAGGAATATTGTTGAGTGATATA
1 ATAGGAATATTGTTGAGTGATATA
13893534 CTTGTCATAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.00, G:0.25, T:0.38
Consensus pattern (24 bp):
ATAGGAATATTGTTGAGTGATATA
Found at i:13902677 original size:26 final size:26
Alignment explanation
Indices: 13902647--13902704 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
13902637 TAAACTCCAT
13902647 TATTCACCCATCACACCCCCATTCAC
1 TATTCACCCATCACACCCCCATTCAC
* *
13902673 TATTCACCCATCACACCTCCTTTCAC
1 TATTCACCCATCACACCCCCATTCAC
13902699 TATTCA
1 TATTCA
13902705 TTATTCCTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.26, C:0.45, G:0.00, T:0.29
Consensus pattern (26 bp):
TATTCACCCATCACACCCCCATTCAC
Found at i:13902989 original size:3 final size:3
Alignment explanation
Indices: 13902983--13903036 Score: 81
Period size: 3 Copynumber: 18.0 Consensus size: 3
13902973 TTTAATTTTT
* * *
13902983 TTA TTA TTA CTA TTA TTA ATC TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
13903031 TTA TTA
1 TTA TTA
13903037 CTCTTATTTC
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:13902996 original size:9 final size:9
Alignment explanation
Indices: 13902984--13903055 Score: 74
Period size: 9 Copynumber: 8.1 Consensus size: 9
13902974 TTAATTTTTT
13902984 TATTATTAC
1 TATTATTAC
*
13902993 TATTATTAA
1 TATTATTAC
* *
13903002 TCTTATTAT
1 TATTATTAC
*
13903011 TATTATTAT
1 TATTATTAC
*
13903020 TATTATTAT
1 TATTATTAC
13903029 TATTATTAC
1 TATTATTAC
* *
13903038 TCTTATTTC
1 TATTATTAC
13903047 T-TTATTAC
1 TATTATTAC
13903055 T
1 T
13903056 GTTCTATCTT
Statistics
Matches: 55, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
8 7 0.13
9 48 0.87
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.62
Consensus pattern (9 bp):
TATTATTAC
Found at i:13903000 original size:12 final size:12
Alignment explanation
Indices: 13902983--13903044 Score: 67
Period size: 12 Copynumber: 5.4 Consensus size: 12
13902973 TTTAATTTTT
13902983 TTATTATTACTA
1 TTATTATTACTA
*
13902995 TTATTA--A-TC
1 TTATTATTACTA
*
13903004 TTATTATTATTA
1 TTATTATTACTA
*
13903016 TTATTATTATTA
1 TTATTATTACTA
*
13903028 TTATTATTACTC
1 TTATTATTACTA
13903040 TTATT
1 TTATT
13903045 TCTTTATTAC
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
9 7 0.16
10 1 0.02
11 1 0.02
12 34 0.79
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (12 bp):
TTATTATTACTA
Found at i:13904659 original size:17 final size:17
Alignment explanation
Indices: 13904632--13904673 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
13904622 GTCCATTTAC
* *
13904632 TTTACTTTGTTTTTCTT
1 TTTATTTTGTTTTTATT
*
13904649 TTTCTTTTGTTTTTATT
1 TTTATTTTGTTTTTATT
13904666 TTTATTTT
1 TTTATTTT
13904674 AATTCCATGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.07, C:0.07, G:0.05, T:0.81
Consensus pattern (17 bp):
TTTATTTTGTTTTTATT
Found at i:13906101 original size:46 final size:45
Alignment explanation
Indices: 13906048--13906223 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 45
13906038 TATTTGGGCA
13906048 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
13906094 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
13906141 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
13906187 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
13906224 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 69 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:13906203 original size:93 final size:93
Alignment explanation
Indices: 13906044--13906215 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
13906034 AGGATATTTG
* *
13906044 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
13906109 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
13906137 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
13906202 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
13906216 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:13910042 original size:20 final size:20
Alignment explanation
Indices: 13910013--13910060 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
13910003 TCCAATATAT
*
13910013 TAATTTAGGTTTTGATGTGC
1 TAATTCAGGTTTTGATGTGC
13910033 TAATTCAGGTTTTGATGTGC
1 TAATTCAGGTTTTGATGTGC
*
13910053 TTATTCAG
1 TAATTCAG
13910061 TGGAGCAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.21, C:0.08, G:0.23, T:0.48
Consensus pattern (20 bp):
TAATTCAGGTTTTGATGTGC
Found at i:13924740 original size:64 final size:64
Alignment explanation
Indices: 13924635--13924755 Score: 161
Period size: 64 Copynumber: 1.9 Consensus size: 64
13924625 GCCTATATCG
* * * **
13924635 GGATGCTCATAAAGAGCTGTGGCATGTCCGCAATATGTGCAAGATCAATACCGATCATATAACA
1 GGATGCTCACAAAGAGCTATGGCATGTCCGCAACACATGCAAGATCAATACCGATCATATAACA
* * * *
13924699 GGATGCTCACAAAGAGTTATTGTATGTCCGCAACACATGCAAGATCAATACTGATCA
1 GGATGCTCACAAAGAGCTATGGCATGTCCGCAACACATGCAAGATCAATACCGATCA
13924756 GGATGCTCGC
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
64 48 1.00
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.24
Consensus pattern (64 bp):
GGATGCTCACAAAGAGCTATGGCATGTCCGCAACACATGCAAGATCAATACCGATCATATAACA
Found at i:13925668 original size:9 final size:9
Alignment explanation
Indices: 13925654--13925680 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
13925644 GATCATGGTT
13925654 TTTCTTTGA
1 TTTCTTTGA
13925663 TTTCTTTGA
1 TTTCTTTGA
13925672 TTTCTTTGA
1 TTTCTTTGA
13925681 AGCTGATGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.11, G:0.11, T:0.67
Consensus pattern (9 bp):
TTTCTTTGA
Found at i:13927877 original size:17 final size:18
Alignment explanation
Indices: 13927857--13927898 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 18
13927847 TATAATATAA
13927857 TATAATATAATTTAC-TT
1 TATAATATAATTTACTTT
* *
13927874 TATATTATTATTTACTTT
1 TATAATATAATTTACTTT
13927892 TATAATA
1 TATAATA
13927899 AGTAAATACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (18 bp):
TATAATATAATTTACTTT
Found at i:13935182 original size:17 final size:18
Alignment explanation
Indices: 13935161--13935203 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
13935151 ATATAATATA
13935161 ATATAATATAATTTA-TT
1 ATATAATATAATTTACTT
* * *
13935178 TTATATTATTATTTACTT
1 ATATAATATAATTTACTT
13935196 ATATAATA
1 ATATAATA
13935204 AGTAAATACA
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
17 12 0.60
18 8 0.40
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (18 bp):
ATATAATATAATTTACTT
Found at i:13949781 original size:17 final size:18
Alignment explanation
Indices: 13949761--13949796 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
13949751 TAATCTTGTT
13949761 TTAATAAATTAATA-GCA
1 TTAATAAATTAATATGCA
*
13949778 TTAATAATTTAATATGCA
1 TTAATAAATTAATATGCA
13949796 T
1 T
13949797 ATATTTGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.42
Consensus pattern (18 bp):
TTAATAAATTAATATGCA
Found at i:13950897 original size:33 final size:33
Alignment explanation
Indices: 13950855--13950921 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
13950845 TGTCGAAGAG
*
13950855 AATATCTGACACCATTCGCAAAGGTATGGTTCT
1 AATATCTGACACCACTCGCAAAGGTATGGTTCT
13950888 AATATCTGACACCACTCGCAAAGGTATGGTTCT
1 AATATCTGACACCACTCGCAAAGGTATGGTTCT
13950921 A
1 A
13950922 TTTCATTCGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.28
Consensus pattern (33 bp):
AATATCTGACACCACTCGCAAAGGTATGGTTCT
Found at i:13954103 original size:20 final size:21
Alignment explanation
Indices: 13954078--13954119 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
13954068 TGGAATGGTT
13954078 AATTTAA-TCAATTTAGCTTG
1 AATTTAATTCAATTTAGCTTG
* *
13954098 AATTTAATTCATTTTAGGTTG
1 AATTTAATTCAATTTAGCTTG
13954119 A
1 A
13954120 TTGCATTTCG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.48
Consensus pattern (21 bp):
AATTTAATTCAATTTAGCTTG
Found at i:13961656 original size:18 final size:18
Alignment explanation
Indices: 13961597--13961658 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
13961587 TCGTCTTTAT
* *
13961597 CTCCATCTTCATCTCTAC
1 CTCCACCTTCACCTCTAC
* * * * *
13961615 ATCCATCTCCACCTCCAT
1 CTCCACCTTCACCTCTAC
*
13961633 CGCCACCTTCACCTCTAC
1 CTCCACCTTCACCTCTAC
13961651 CTCCACCT
1 CTCCACCT
13961659 CCATCTTAAT
Statistics
Matches: 32, Mismatches: 12, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.18, C:0.52, G:0.02, T:0.29
Consensus pattern (18 bp):
CTCCACCTTCACCTCTAC
Found at i:13965919 original size:56 final size:56
Alignment explanation
Indices: 13965838--13965952 Score: 160
Period size: 56 Copynumber: 2.1 Consensus size: 56
13965828 AGAAATGATG
** *
13965838 AAATGGAGAAATAGGAACATCTGGAAATGGTTATGATTTTCTCCAAAATGAAAATA
1 AAATGGAGAAATAGGAACATCTGGAAATGAATATAATTTTCTCCAAAATGAAAATA
* * *
13965894 AAATGGAGAAA-CGGAATCATTTGGAAATGAATGTAATTTTCTCCAAAATGAAAATA
1 AAATGGAGAAATAGGAA-CATCTGGAAATGAATATAATTTTCTCCAAAATGAAAATA
13965950 AAA
1 AAA
13965953 ATGGCCTGAA
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 4 0.08
56 48 0.92
ACGTcount: A:0.47, C:0.09, G:0.18, T:0.26
Consensus pattern (56 bp):
AAATGGAGAAATAGGAACATCTGGAAATGAATATAATTTTCTCCAAAATGAAAATA
Found at i:13971814 original size:53 final size:54
Alignment explanation
Indices: 13971685--13971939 Score: 256
Period size: 55 Copynumber: 4.8 Consensus size: 54
13971675 ACACGGGTAC
* * * *
13971685 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
13971734 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
13971787 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
** * * * *
13971842 CTTATTAATGCCATGTCTTGACATAGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
*
13971895 CCTTACCAATTGCCATGCCTTGACATGGTCTTACACGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
13971940 AAACCCTAAT
Statistics
Matches: 169, Mismatches: 26, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 49 0.29
54 9 0.05
55 69 0.41
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:13986329 original size:25 final size:26
Alignment explanation
Indices: 13986301--13986355 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 26
13986291 GAACGGAAAA
13986301 AAAATCTAAAACCTAAA-AAAAAGAG
1 AAAATCTAAAACCTAAATAAAAAGAG
** * *
13986326 AAAA-CTAGGATCTAAATATAAAGAG
1 AAAATCTAAAACCTAAATAAAAAGAG
13986351 AAAAT
1 AAAAT
13986356 TATACAATCG
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
24 9 0.38
25 15 0.62
ACGTcount: A:0.64, C:0.09, G:0.11, T:0.16
Consensus pattern (26 bp):
AAAATCTAAAACCTAAATAAAAAGAG
Found at i:13991768 original size:39 final size:40
Alignment explanation
Indices: 13991705--13991892 Score: 274
Period size: 39 Copynumber: 4.8 Consensus size: 40
13991695 GATAATAACT
* * *
13991705 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAT-TCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATGACC
* *
13991745 GGGCTAAGT-CCGAAGGCAATTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATGACC
*
13991784 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATGACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATGACC
*
13991824 -GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATGACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATGACC
*
13991863 GGGCTAAGTCCCGAAGGCATTTGGGCGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT
13991893 AGCTATATCC
Statistics
Matches: 136, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
38 2 0.01
39 70 0.51
40 64 0.47
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATGACC
Found at i:13991808 original size:40 final size:40
Alignment explanation
Indices: 13991699--13991908 Score: 268
Period size: 39 Copynumber: 5.3 Consensus size: 40
13991689 ATATTCGATA
* * *
13991699 ATAACTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
13991739 A-ATTCCGGGCTAAGT-CCGAAGGCAATTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
13991778 ATAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
13991818 ATGACC-GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
13991857 ATGACCGGGCTAAGTCCCGAAGGCATTTGGGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
*
13991897 ATATCC-GGCTAA
1 ATAACCGGGCTAA
13991909 ACCGAAGGTA
Statistics
Matches: 152, Mismatches: 13, Indels: 11
0.86 0.07 0.06
Matches are distributed among these distances:
39 80 0.53
40 72 0.47
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:13991837 original size:79 final size:79
Alignment explanation
Indices: 13991699--13991892 Score: 275
Period size: 79 Copynumber: 2.5 Consensus size: 79
13991689 ATATTCGATA
* * *
13991699 ATAACTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGTCCGAAGGCAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCGAAGGCAA
13991764 TTGTGCGAGTTACT
66 TTGTGCGAGTTACT
* * *
13991778 ATAACCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATGACC-GGTTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAGT-CCGAAGGC
*
13991841 ATTTGTGCGAGTTACT
64 AATTGTGCGAGTTACT
* *
13991857 ATGACCGGGCTAAGTCCCGAAGGCATTTGGGCGAGT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
13991893 AGCTATATCC
Statistics
Matches: 103, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
78 9 0.09
79 94 0.91
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGTCCGAAGGCAA
TTGTGCGAGTTACT
Found at i:14006407 original size:17 final size:17
Alignment explanation
Indices: 14006385--14006418 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
14006375 TTTTATTTTA
14006385 TTTTAT-TTTATTAAATT
1 TTTTATATTTA-TAAATT
14006402 TTTTATATTTATAAATT
1 TTTTATATTTATAAATT
14006419 GTAAATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTTATATTTATAAATT
Found at i:14015563 original size:13 final size:13
Alignment explanation
Indices: 14015545--14015570 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14015535 ATTTTAACTG
14015545 TTTTCATTTCTAT
1 TTTTCATTTCTAT
14015558 TTTTCATTTCTAT
1 TTTTCATTTCTAT
14015571 AGATAATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTCATTTCTAT
Found at i:14020240 original size:19 final size:19
Alignment explanation
Indices: 14020218--14020278 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
14020208 GGATTTAAGG
14020218 TTTATTAATAAAAAGACAA
1 TTTATTAATAAAAAGACAA
* * * *
14020237 TTTACATATTTAAAA-TCAGA
1 TTTA-TTAATAAAAAGACA-A
14020257 TTTATTAATAAAAAGACAA
1 TTTATTAATAAAAAGACAA
14020276 TTT
1 TTT
14020279 GTATATTCAA
Statistics
Matches: 31, Mismatches: 8, Indels: 6
0.69 0.18 0.13
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.51, C:0.07, G:0.05, T:0.38
Consensus pattern (19 bp):
TTTATTAATAAAAAGACAA
Found at i:14030529 original size:5 final size:5
Alignment explanation
Indices: 14030514--14030558 Score: 54
Period size: 6 Copynumber: 8.2 Consensus size: 5
14030504 TATAAACACC
14030514 TATTAT TATTT TATTT TATTT TATTTT TATCTT TATTT ATATTT T
1 TATT-T TATTT TATTT TATTT TA-TTT TAT-TT TATTT -TATTT T
14030559 GAAATTACTT
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
5 17 0.47
6 19 0.53
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (5 bp):
TATTT
Found at i:14030534 original size:10 final size:10
Alignment explanation
Indices: 14030514--14030558 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 10
14030504 TATAAACACC
14030514 TATTATTATTT
1 TATT-TTATTT
14030525 TATTTTATTT
1 TATTTTATTT
14030535 TATTTTTATCTT
1 TA-TTTTAT-TT
14030547 TATTTATATTT
1 TATTT-TATTT
14030558 T
1 T
14030559 GAAATTACTT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
10 8 0.26
11 16 0.52
12 7 0.23
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (10 bp):
TATTTTATTT
Found at i:14033941 original size:47 final size:47
Alignment explanation
Indices: 14033836--14033965 Score: 165
Period size: 47 Copynumber: 2.8 Consensus size: 47
14033826 GGATAAGTTT
* *
14033836 CCGATGCCATGTCCCAGACATGTCTTACACTGGCACTTATCTCTACC
1 CCGATGCCATGTCCCAGACATGTCTTACACTGGCACTCATATCTACC
* * **
14033883 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGT-GG
1 CCGATGCCATGTCCCAGACAT-GTCTTACACTGGCACTCAT-ATCTACC
*
14033931 CCGATG-CATGTCCTAGACATGTCTTACACTGGCAC
1 CCGATGCCATGTCCCAGACATGTCTTACACTGGCAC
14033966 ACAATCACCC
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
46 14 0.19
47 34 0.47
48 23 0.32
49 2 0.03
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.27
Consensus pattern (47 bp):
CCGATGCCATGTCCCAGACATGTCTTACACTGGCACTCATATCTACC
Found at i:14044248 original size:24 final size:25
Alignment explanation
Indices: 14044181--14044248 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 25
14044171 CACATATATG
* *
14044181 CTCATATGAGCTACGAATCGGTATG
1 CTCATACGAGCTACGAATCGGTATA
* *
14044206 CTC-TCACAAGCTATGAATCGGTA-A
1 CTCAT-ACGAGCTACGAATCGGTATA
*
14044230 CTCATACGAGCTACAAATC
1 CTCATACGAGCTACGAATC
14044249 AATAAGCTCA
Statistics
Matches: 34, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
24 15 0.44
25 19 0.56
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (25 bp):
CTCATACGAGCTACGAATCGGTATA
Found at i:14046305 original size:26 final size:26
Alignment explanation
Indices: 14046271--14046351 Score: 110
Period size: 26 Copynumber: 3.1 Consensus size: 26
14046261 ATTTGAATAT
*
14046271 GGTTCAATTGAAATGCTGGAGCTTTG
1 GGTTCAATTGAAGTGCTGGAGCTTTG
* *
14046297 GTTTCAATT-AGAGTGCTAGAGCTTTG
1 GGTTCAATTGA-AGTGCTGGAGCTTTG
*
14046323 GGTTCAATTGGAGTGCTGGAGCTTTG
1 GGTTCAATTGAAGTGCTGGAGCTTTG
14046349 GGT
1 GGT
14046352 CATACACAGC
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
25 1 0.02
26 46 0.98
ACGTcount: A:0.20, C:0.11, G:0.33, T:0.36
Consensus pattern (26 bp):
GGTTCAATTGAAGTGCTGGAGCTTTG
Found at i:14049149 original size:37 final size:37
Alignment explanation
Indices: 14049096--14049195 Score: 164
Period size: 37 Copynumber: 2.7 Consensus size: 37
14049086 CGAATAGTCC
* *
14049096 CCACACGTAGTTATCGGGTCTTGCCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
14049133 CCACACATAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
14049170 CCACACGTAGTCATCGGGTCTTACCC
1 CCACACGTAGTCATCGGGTCTTACCC
14049196 AGAATATATT
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:14049425 original size:48 final size:48
Alignment explanation
Indices: 14049371--14049823 Score: 816
Period size: 48 Copynumber: 9.4 Consensus size: 48
14049361 GCCGAATCAC
* *
14049371 TAGCCATTCGGCTTTACCACATATACATATCTCATACACATTTCGCAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
14049419 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
14049467 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
14049515 TAGCCATTCGGTTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
14049563 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
* * *
14049611 TAGCCATTCGGCTTTACCACGTATACATATCTCATACATAGTTCACAC
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
14049659 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
14049707 TAGCCATTCGGCTTTACCTCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
*
14049755 TAGCCATTCGGCTTTACCGCATATACATATCTCATACATATTTCACAT
1 TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
14049803 TAGCCATTCGGCTTTACCACA
1 TAGCCATTCGGCTTTACCACA
14049824 CACATATATA
Statistics
Matches: 390, Mismatches: 15, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 390 1.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.35
Consensus pattern (48 bp):
TAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACAT
Found at i:14066076 original size:17 final size:17
Alignment explanation
Indices: 14066051--14066094 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
14066041 TTTGAGTCTA
*
14066051 TTTATTTTTTAATTTGTT
1 TTTA-TTTTTAATTTATT
* *
14066069 TTTCTTTTTATTTTATT
1 TTTATTTTTAATTTATT
14066086 TTTATTTTT
1 TTTATTTTT
14066095 GCATTTCATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 19 0.86
18 3 0.14
ACGTcount: A:0.14, C:0.02, G:0.02, T:0.82
Consensus pattern (17 bp):
TTTATTTTTAATTTATT
Found at i:14069877 original size:54 final size:54
Alignment explanation
Indices: 14069818--14069926 Score: 209
Period size: 54 Copynumber: 2.0 Consensus size: 54
14069808 CATTTTGATG
*
14069818 TGAGCTCCAAACTTGGTCTTAACGTCTAGGCCGAGTATGGGGTGTTACATTGCC
1 TGAGCTCCAAACTTGGTCTTAACGTCTAGGCCGAGTATAGGGTGTTACATTGCC
14069872 TGAGCTCCAAACTTGGTCTTAACGTCTAGGCCGAGTATAGGGTGTTACATTGCC
1 TGAGCTCCAAACTTGGTCTTAACGTCTAGGCCGAGTATAGGGTGTTACATTGCC
14069926 T
1 T
14069927 CTTTGATGGT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (54 bp):
TGAGCTCCAAACTTGGTCTTAACGTCTAGGCCGAGTATAGGGTGTTACATTGCC
Found at i:14071948 original size:25 final size:24
Alignment explanation
Indices: 14071874--14072079 Score: 125
Period size: 22 Copynumber: 8.8 Consensus size: 24
14071864 AAAACAATTA
14071874 AAAATAAAT-A-AAT-AAAAGTTT
1 AAAATAAATAATAATAAAAAGTTT
* * *
14071895 CAAATAAACAATATATAAAAA-CTT
1 AAAATAAATAATA-ATAAAAAGTTT
*
14071919 AAAATAAATAGTAATAAAACAGTTT
1 AAAATAAATAATAATAAAA-AGTTT
* * *
14071944 AAAATGAATAATAAT--ATA-TAT
1 AAAATAAATAATAATAAAAAGTTT
*
14071965 AAAATAACAT-ATAA-AACAA-TTT
1 AAAATAA-ATAATAATAAAAAGTTT
14071987 AAAA-AAATAATATATAAAAA-TTT
1 AAAATAAATAATA-ATAAAAAGTTT
* *
14072010 -AAA-AGATAATATATATAATAGTTT
1 AAAATAAATAATA-ATA-AAAAGTTT
**
14072034 AAAATAAATAATATATGAAAGAAACTT
1 AAAATAAATAATA-AT-AAA-AAGTTT
14072061 AAAATAAATAATAATAAAA
1 AAAATAAATAATAATAAAA
14072080 GAGCCTTTTT
Statistics
Matches: 145, Mismatches: 22, Indels: 33
0.73 0.11 0.17
Matches are distributed among these distances:
20 2 0.01
21 24 0.17
22 26 0.18
23 18 0.12
24 19 0.13
25 25 0.17
26 14 0.10
27 17 0.12
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.29
Consensus pattern (24 bp):
AAAATAAATAATAATAAAAAGTTT
Found at i:14072047 original size:22 final size:22
Alignment explanation
Indices: 14071869--14072048 Score: 109
Period size: 24 Copynumber: 7.9 Consensus size: 22
14071859 TTATAAAAAC
*
14071869 AATTAAAAATAAATAA-ATAAA
1 AATTTAAAATAAATAATATAAA
* * *
14071890 AGTTTCAAATAAACAATATATAAA
1 AATTTAAAATAAA-TA-ATATAAA
* *
14071914 AACTTAAAATAAATAGTAATAAA
1 AATTTAAAATAAATAAT-ATAAA
* *
14071937 ACAGTTTAAAATGAATAATA-ATA
1 A-A-TTTAAAATAAATAATATAAA
* *
14071960 TATATAAAATAACAT-ATA-AAA
1 AATTTAAAATAA-ATAATATAAA
14071981 CAATTTAAAA-AAATAATATATAAA
1 -AATTTAAAATAAAT-A-ATATAAA
* *
14072005 AATTTAAAAGATAATATATATAAT
1 AATTTAAAATA-AATA-ATATAAA
*
14072029 AGTTTAAAATAAATAATATA
1 AATTTAAAATAAATAATATA
14072049 TGAAAGAAAC
Statistics
Matches: 123, Mismatches: 22, Indels: 27
0.72 0.13 0.16
Matches are distributed among these distances:
20 2 0.02
21 25 0.20
22 17 0.14
23 26 0.21
24 38 0.31
25 15 0.12
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.30
Consensus pattern (22 bp):
AATTTAAAATAAATAATATAAA
Found at i:14073744 original size:44 final size:44
Alignment explanation
Indices: 14073629--14073990 Score: 305
Period size: 44 Copynumber: 8.0 Consensus size: 44
14073619 AGATTTGTGG
* * * * * *
14073629 TTTGTAGCTTTAATCCGCTCTACTGTAGCTTCAGAGATATAAGA
1 TTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
* *
14073673 TTTGCTA-TTTTCAATATGCTCCACTGCAACTTCAGGGAGATAAGA
1 TTTG-TAGCTTT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGA
* * * *
14073718 CTTGTAACTTTAA-CTTGCTCCACTGCAACTTCAAGGAGATAAGG
1 TTTGTAGCTTTAATC-TGCTCCACTGCAACTTCAGGGAGATAAGA
* * * * * * *
14073762 TTTGTGGTTTTAATCTACTCCACTACAACTTCAAGGAGTTGAGA
1 TTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
* * * * * *
14073806 TTTATGGTTTTAATCTGCTCCACTGTAACTTTAGGGAGTTAAGA
1 TTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
*
14073850 TTTGTAGCCTGTCTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGA
1 TTTGTAG-C--T-TT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGA
** * * *
14073899 TTTGTTTATTTTTAACCTGCCCCACTGCAACTTCAGGGAGATAAGG
1 TTTG--TAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
* * * *
14073945 TTTATGGCTTTAATCTGCTCTACTGTAACTTCAGGGAGATAAGA
1 TTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
14073989 TT
1 TT
14073991 CGCCATGGTA
Statistics
Matches: 255, Mismatches: 51, Indels: 24
0.77 0.15 0.07
Matches are distributed among these distances:
44 147 0.58
45 35 0.14
46 32 0.13
47 3 0.01
48 3 0.01
49 33 0.13
51 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (44 bp):
TTTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
Found at i:14073962 original size:139 final size:137
Alignment explanation
Indices: 14073689--14073990 Score: 355
Period size: 139 Copynumber: 2.2 Consensus size: 137
14073679 ATTTTCAATA
* * * *
14073689 TGCTCCACTGCAACTTCAGGGAGATAAGACTTGTA-AC--T-TT-AA-CTTGCTCCACTGCAACT
1 TGCTCCACTGTAACTTCAGGGAGATAAGATTTGTAGCCTGTCTTCAATC-TACTCCACTGCAACT
* * * * * *
14073748 TCAAGGAGATAAGGTTTGTGGTTTTAATCTACTCCACTACAACTTCAAGGAGTTGAGATTTATGG
65 TCAAGGAGATAAGATTTGTAGTTTTAACCTACCCCACTACAACTTCAAGGAGATAAGATTTATGG
*
14073813 TTTTAATC
130 CTTTAATC
* *
14073821 TGCTCCACTGTAACTTTAGGGAGTTAAGATTTGTAGCCTGTCTTCAATCTACTCCACTGCAACTT
1 TGCTCCACTGTAACTTCAGGGAGATAAGATTTGTAGCCTGTCTTCAATCTACTCCACTGCAACTT
* * * * * *
14073886 CAGGGAGATAAGATTTGTTTATTTTTAACCTGCCCCACTGCAACTTCAGGGAGATAAGGTTTATG
66 CAAGGAGATAAGATTTG--TAGTTTTAACCTACCCCACTACAACTTCAAGGAGATAAGATTTATG
14073951 GCTTTAATC
129 GCTTTAATC
*
14073960 TGCTCTACTGTAACTTCAGGGAGATAAGATT
1 TGCTCCACTGTAACTTCAGGGAGATAAGATT
14073991 CGCCATGGTA
Statistics
Matches: 140, Mismatches: 22, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
132 31 0.22
133 1 0.01
135 1 0.01
136 2 0.01
137 32 0.23
138 1 0.01
139 72 0.51
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (137 bp):
TGCTCCACTGTAACTTCAGGGAGATAAGATTTGTAGCCTGTCTTCAATCTACTCCACTGCAACTT
CAAGGAGATAAGATTTGTAGTTTTAACCTACCCCACTACAACTTCAAGGAGATAAGATTTATGGC
TTTAATC
Found at i:14086013 original size:17 final size:17
Alignment explanation
Indices: 14085987--14086023 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
14085977 ACAAAATAAT
14085987 ATAAAAAATAATTTAAA
1 ATAAAAAATAATTTAAA
* *
14086004 ATAAAGAATAGTTTAAA
1 ATAAAAAATAATTTAAA
14086021 ATA
1 ATA
14086024 GATAATTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (17 bp):
ATAAAAAATAATTTAAA
Found at i:14086096 original size:24 final size:24
Alignment explanation
Indices: 14086037--14086138 Score: 68
Period size: 24 Copynumber: 4.2 Consensus size: 24
14086027 AATTTATAAA
*
14086037 AAAAATTAAAAATAAAT-A-A-AT
1 AAAAATTTAAAATAAATAATATAT
* * * *
14086058 AAAAGTTTCATATAAACAATATAT
1 AAAAATTTAAAATAAATAATATAT
* *
14086082 AAAAACTTAAAATAAATAGTA-AT
1 AAAAATTTAAAATAAATAATATAT
14086105 AAAACAGTTTAAAATGAACAATAATATAT
1 AAAA-A-TTTAAAAT--A-AATAATATAT
14086134 AAAAA
1 AAAAA
14086139 AATAACATAT
Statistics
Matches: 59, Mismatches: 13, Indels: 11
0.71 0.16 0.13
Matches are distributed among these distances:
21 12 0.20
22 1 0.02
23 7 0.12
24 18 0.31
25 7 0.12
27 1 0.02
28 7 0.12
29 6 0.10
ACGTcount: A:0.65, C:0.05, G:0.04, T:0.26
Consensus pattern (24 bp):
AAAAATTTAAAATAAATAATATAT
Found at i:14086174 original size:26 final size:25
Alignment explanation
Indices: 14086133--14086248 Score: 107
Period size: 26 Copynumber: 4.6 Consensus size: 25
14086123 CAATAATATA
*
14086133 TAAAA-AAATAACATATAAAGCAATT
1 TAAAATAAATAATATATAAAG-AATT
14086158 TAAAA-AAATATATATATAAA-AATT
1 TAAAATAAATA-ATATATAAAGAATT
*
14086182 TAAAAGATAATATATATATAATAG--TT
1 TAAAATA-AATA-ATATATAA-AGAATT
*
14086208 TAAAATAAATAATATATGAAAGAAACT
1 TAAAATAAATAATATAT-AAAG-AATT
14086235 TAAAATAAATAATA
1 TAAAATAAATAATA
14086249 ACAAAAGAGC
Statistics
Matches: 79, Mismatches: 3, Indels: 16
0.81 0.03 0.16
Matches are distributed among these distances:
24 17 0.22
25 17 0.22
26 29 0.37
27 16 0.20
ACGTcount: A:0.63, C:0.03, G:0.04, T:0.30
Consensus pattern (25 bp):
TAAAATAAATAATATATAAAGAATT
Found at i:14088496 original size:45 final size:45
Alignment explanation
Indices: 14088445--14088532 Score: 131
Period size: 45 Copynumber: 2.0 Consensus size: 45
14088435 TTCTTGACCA
* *
14088445 AATATAAATTATTAATAATAAATATTATATAATTAAATTAACTTT
1 AATATAAATAATTAATAATAAATACTATATAATTAAATTAACTTT
* * *
14088490 AATATAAATAATTTATAATAAATACTATATATTTTAATTAACT
1 AATATAAATAATTAATAATAAATACTATATAATTAAATTAACT
14088533 ATTATTTAAT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.44
Consensus pattern (45 bp):
AATATAAATAATTAATAATAAATACTATATAATTAAATTAACTTT
Found at i:14088508 original size:16 final size:16
Alignment explanation
Indices: 14088445--14088509 Score: 50
Period size: 15 Copynumber: 4.2 Consensus size: 16
14088435 TTCTTGACCA
* *
14088445 AATATAAATTATTAAT
1 AATATAAATAATTTAT
14088461 -A-ATAAAT-ATTATAT
1 AATATAAATAATT-TAT
*
14088475 AAT-TAAATTAACTT-T
1 AATATAAA-TAATTTAT
14088490 AATATAAATAATTTAT
1 AATATAAATAATTTAT
14088506 AATA
1 AATA
14088510 AATACTATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 14
0.70 0.05 0.25
Matches are distributed among these distances:
13 3 0.08
14 8 0.21
15 15 0.38
16 11 0.28
17 2 0.05
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (16 bp):
AATATAAATAATTTAT
Found at i:14088513 original size:14 final size:14
Alignment explanation
Indices: 14088448--14088513 Score: 55
Period size: 14 Copynumber: 4.5 Consensus size: 14
14088438 TTGACCAAAT
* *
14088448 ATAAATTATTAATA
1 ATAAATAATTTATA
14088462 ATAAAT-ATTATATA
1 ATAAATAATT-TATA
14088476 ATTAAATTAACTTTA-A
1 A-TAAA-TAA-TTTATA
14088492 TATAAATAATTTATA
1 -ATAAATAATTTATA
14088507 ATAAATA
1 ATAAATA
14088514 CTATATATTT
Statistics
Matches: 44, Mismatches: 1, Indels: 14
0.75 0.02 0.24
Matches are distributed among these distances:
13 3 0.07
14 21 0.48
15 8 0.18
16 6 0.14
17 4 0.09
18 2 0.05
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (14 bp):
ATAAATAATTTATA
Found at i:14088513 original size:20 final size:20
Alignment explanation
Indices: 14088444--14088513 Score: 59
Period size: 20 Copynumber: 3.2 Consensus size: 20
14088434 ATTCTTGACC
*
14088444 AAATATAAATTATTAATAAT
1 AAATATAAATAATTAATAAT
*
14088464 AAATATTATATAATTAAATTAACTT
1 AAATA-TAAATAATT-AA-TAA--T
* *
14088489 TAATATAAATAATTTATAAT
1 AAATATAAATAATTAATAAT
14088509 AAATA
1 AAATA
14088514 CTATATATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
20 10 0.26
21 7 0.18
22 5 0.13
23 4 0.10
24 8 0.21
25 5 0.13
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.41
Consensus pattern (20 bp):
AAATATAAATAATTAATAAT
Found at i:14092242 original size:15 final size:15
Alignment explanation
Indices: 14092222--14092329 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
14092212 TTTATGGAAA
14092222 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
14092237 ATCAAATA-ATGGAA
1 ATCAAAGATATGGGT
14092251 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* ***
14092267 ATCAAATAT-TGAAA
1 ATCAAAGATATGGGT
14092281 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
14092297 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
14092311 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
14092327 ATC
1 ATC
14092330 GAGATATTGG
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.44, C:0.07, G:0.22, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:14092251 original size:30 final size:30
Alignment explanation
Indices: 14092215--14092329 Score: 178
Period size: 30 Copynumber: 3.8 Consensus size: 30
14092205 ATCCATATTT
14092215 ATGGAAAATCAAAGATATGGGTATCAAATA
1 ATGGAAAATCAAAGATATGGGTATCAAATA
*
14092245 ATGGAAAGTCAAAGATATGGGTATCAAAT-
1 ATGGAAAATCAAAGATATGGGTATCAAATA
*
14092274 ATTGAAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAA-TCAAAGATATGGGTATCAAATA
* *
14092305 TTGGAAAGTCAAAGATATGGGTATC
1 ATGGAAAATCAAAGATATGGGTATC
14092330 GAGATATTGG
Statistics
Matches: 77, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
29 6 0.08
30 66 0.86
31 5 0.06
ACGTcount: A:0.45, C:0.07, G:0.23, T:0.25
Consensus pattern (30 bp):
ATGGAAAATCAAAGATATGGGTATCAAATA
Found at i:14092316 original size:60 final size:60
Alignment explanation
Indices: 14092218--14092338 Score: 208
Period size: 60 Copynumber: 2.0 Consensus size: 60
14092208 CATATTTATG
14092218 GAAAATCAAAGATATGGGTATCAAATAATGGAAAGTCAAAGATATGGGTATC-AAATATT
1 GAAAATCAAAGATATGGGTATCAAATAATGGAAAGTCAAAGATATGGGTATCGAAATATT
* *
14092277 GAAAAGTCAAAGATATGGGTATCAAATATTGGAAAGTCAAAGATATGGGTATCGAGATATT
1 GAAAA-TCAAAGATATGGGTATCAAATAATGGAAAGTCAAAGATATGGGTATCGAAATATT
14092338 G
1 G
14092339 GCATAATAAA
Statistics
Matches: 58, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
59 5 0.09
60 46 0.79
61 7 0.12
ACGTcount: A:0.45, C:0.07, G:0.23, T:0.26
Consensus pattern (60 bp):
GAAAATCAAAGATATGGGTATCAAATAATGGAAAGTCAAAGATATGGGTATCGAAATATT
Found at i:14096936 original size:15 final size:15
Alignment explanation
Indices: 14096916--14096993 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
14096906 TTTATGGAAA
14096916 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
14096931 ATCAAATA-ATGGAA
1 ATCAAAGATATGGGT
14096945 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
14096961 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
14096975 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
14096991 ATC
1 ATC
14096994 GAGATATTGG
Statistics
Matches: 47, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
14 9 0.19
15 29 0.62
16 9 0.19
ACGTcount: A:0.44, C:0.08, G:0.23, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:14096945 original size:30 final size:30
Alignment explanation
Indices: 14096909--14096993 Score: 152
Period size: 30 Copynumber: 2.8 Consensus size: 30
14096899 ATCCATATTT
*
14096909 ATGGAAAATCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
14096939 ATGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
14096969 TTGGAAAGTCAAAGATATGGGTATC
1 ATGGAAAGTCAAAGATATGGGTATC
14096994 GAGATATTGG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 53 1.00
ACGTcount: A:0.45, C:0.07, G:0.24, T:0.25
Consensus pattern (30 bp):
ATGGAAAGTCAAAGATATGGGTATCAAATA
Found at i:14098683 original size:6 final size:6
Alignment explanation
Indices: 14098672--14098698 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
14098662 ATCAACCTAA
14098672 TTAAAT TTAAAT TTAAAT TTAAAT TTA
1 TTAAAT TTAAAT TTAAAT TTAAAT TTA
14098699 TATATTACAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TTAAAT
Found at i:14098785 original size:2 final size:2
Alignment explanation
Indices: 14098778--14098803 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
14098768 TTAAATTGTA
14098778 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
14098804 TCATAAATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14100048 original size:13 final size:13
Alignment explanation
Indices: 14100030--14100054 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14100020 ATATTTATTA
14100030 ATAAAATATTAAT
1 ATAAAATATTAAT
14100043 ATAAAATATTAA
1 ATAAAATATTAA
14100055 AAATATTTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
ATAAAATATTAAT
Found at i:14100178 original size:13 final size:13
Alignment explanation
Indices: 14100160--14100184 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14100150 AATATTCACA
14100160 ATTTTAATATTTG
1 ATTTTAATATTTG
14100173 ATTTTAATATTT
1 ATTTTAATATTT
14100185 TATTATTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (13 bp):
ATTTTAATATTTG
Found at i:14100758 original size:49 final size:47
Alignment explanation
Indices: 14100628--14100761 Score: 119
Period size: 49 Copynumber: 2.8 Consensus size: 47
14100618 TAGTTCAATT
* * * *
14100628 TAAACTTAAA-TAAATTAATAAAAAATATATTTAACT-TTTATTAATT
1 TAAACATAAATTAAA-TAATAAAAAATATATTTAAATATTTATAAATC
* * * ** *
14100674 TTAATATAAATTAATATCATGTAAAATTTATTTTAAATATTTATAAATC
1 TAAACATAAATTAA-ATAATAAAAAATATA-TTTAAATATTTATAAATC
14100723 TAAACATAAATTAAAGTAATAAAACAATATATTTAAATA
1 TAAACATAAATTAAA-TAATAAAA-AATATATTTAAATA
14100762 AATAGTTTTT
Statistics
Matches: 66, Mismatches: 16, Indels: 9
0.73 0.18 0.10
Matches are distributed among these distances:
46 7 0.11
47 13 0.20
48 8 0.12
49 33 0.50
50 5 0.08
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.41
Consensus pattern (47 bp):
TAAACATAAATTAAATAATAAAAAATATATTTAAATATTTATAAATC
Found at i:14101867 original size:17 final size:17
Alignment explanation
Indices: 14101845--14101878 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
14101835 ATTTTGGGCC
14101845 CTAAACCAAACAACCCA
1 CTAAACCAAACAACCCA
14101862 CTAAACCAAACAACCCA
1 CTAAACCAAACAACCCA
14101879 ATAACCCGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.41, G:0.00, T:0.06
Consensus pattern (17 bp):
CTAAACCAAACAACCCA
Found at i:14103079 original size:3 final size:3
Alignment explanation
Indices: 14103071--14103112 Score: 59
Period size: 3 Copynumber: 14.0 Consensus size: 3
14103061 TGTATTTTCA
*
14103071 TAT TAT TAT TAT TAT TAT TA- TAT TAT TAT ATAT TTT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT
14103113 ATGCATATAC
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 30 0.86
4 3 0.09
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:14120285 original size:16 final size:16
Alignment explanation
Indices: 14120266--14120296 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
14120256 CTTCTTCATT
14120266 TACTTACTTACTTAAA
1 TACTTACTTACTTAAA
14120282 TACTTACTTACTTAA
1 TACTTACTTACTTAA
14120297 TCAAATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.35, C:0.19, G:0.00, T:0.45
Consensus pattern (16 bp):
TACTTACTTACTTAAA
Found at i:14120617 original size:53 final size:54
Alignment explanation
Indices: 14120488--14120742 Score: 256
Period size: 55 Copynumber: 4.8 Consensus size: 54
14120478 ACACGGGTAC
* * * *
14120488 CTTACCATTGCCATGACTTGTCATGGTCTTACGTGGTATCC-T---TT-TGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
14120537 CTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * * *
14120590 CTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAA
* * * *
14120645 CTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-GAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
* * *
14120698 CCTTACCAATTTCCATGCCTTGTCATGGTCTTACACGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
14120743 AAACCCTAAT
Statistics
Matches: 171, Mismatches: 24, Indels: 16
0.81 0.11 0.08
Matches are distributed among these distances:
49 37 0.22
50 1 0.01
52 2 0.01
53 49 0.29
54 10 0.06
55 70 0.41
56 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA
Found at i:14120679 original size:108 final size:110
Alignment explanation
Indices: 14120535--14120732 Score: 294
Period size: 108 Copynumber: 1.8 Consensus size: 110
14120525 ATCCTTTTGA
* *
14120535 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTAGCCTTGCCTTATG-AA-CTCACCAA
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTA-GAAACCTCACCAA
14120598 -TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
65 TTGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
* ** *
14120643 AACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTAGAAACCTTACCAAT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
* *
14120708 TTCCATGCCTTGTCATGGTCTTACA
66 TGCCATGCCTTGGCATGGTCTTACA
14120733 CGGTATCCTT
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 1 0.01
108 48 0.61
109 7 0.09
110 23 0.29
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.35
Consensus pattern (110 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGATAGCCTTGCCTTAGAAACCTCACCAAT
TGCCATGCCTTGGCATGGTCTTACATGGGACCTTTGCCTTATAGT
Found at i:14141251 original size:10 final size:11
Alignment explanation
Indices: 14141231--14141265 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
14141221 AAATAATATT
14141231 TAAATATTTTA
1 TAAATATTTTA
14141242 TAAA-ATTTTA
1 TAAATATTTTA
*
14141252 AAAATATTTTA
1 TAAATATTTTA
14141263 TAA
1 TAA
14141266 TCAGTTGGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 9 0.43
11 12 0.57
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (11 bp):
TAAATATTTTA
Found at i:14145108 original size:27 final size:27
Alignment explanation
Indices: 14145060--14145219 Score: 168
Period size: 27 Copynumber: 5.9 Consensus size: 27
14145050 GCGAGACTGC
* *
14145060 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
14145087 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
14145113 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* * *
14145140 CAGATAATTGTAGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
14145167 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
14145194 TAGATAAATTGTGGCATAGCCACCAG
1 CAGAT--ATTGTGGCAGAGCCACCAG
14145220 GACGCTTCCT
Statistics
Matches: 114, Mismatches: 10, Indels: 17
0.81 0.07 0.12
Matches are distributed among these distances:
26 10 0.09
27 83 0.73
28 19 0.17
29 2 0.02
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:14145150 original size:54 final size:54
Alignment explanation
Indices: 14145078--14145219 Score: 223
Period size: 54 Copynumber: 2.6 Consensus size: 54
14145068 GTGACGAAGT
*
14145078 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* *
14145132 CACCAGATCAGATAATTGTAGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
*
14145186 CACCAGATTAGATAAATTGTGGCATAGCCACCAG
1 CACCAGATCAGAT-AATTGTGGCATAGCCACCAG
14145220 GACGCTTCCT
Statistics
Matches: 81, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
53 5 0.06
54 57 0.70
55 19 0.23
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:14146820 original size:26 final size:26
Alignment explanation
Indices: 14146790--14146845 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
14146780 TGAAATTCCC
14146790 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
14146816 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
14146842 ATCA
1 ATCA
14146846 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.27, G:0.07, T:0.30
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:14147366 original size:59 final size:57
Alignment explanation
Indices: 14147256--14147378 Score: 165
Period size: 59 Copynumber: 2.1 Consensus size: 57
14147246 CATTTTCAAG
* * * *
14147256 TCATTTTCATTTGGAGAAAACCACATTCGTTTTCAAGTGTTCCCCATTTCTCCATTT
1 TCATTTTCATTTGGAGAAAACAAAATTCATTTTCAAATGTTCCCCATTTCTCCATTT
* * *
14147313 TCATTTTCATTTGGGAGAAAAATAAAATTCATTTTCAAATGTTTCCTATTTCTCCATTT
1 TCATTTTCATTT-GGAG-AAAACAAAATTCATTTTCAAATGTTCCCCATTTCTCCATTT
14147372 TCATTTT
1 TCATTTT
14147379 GGAGAAAACC
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
57 12 0.21
58 4 0.07
59 41 0.72
ACGTcount: A:0.26, C:0.20, G:0.09, T:0.46
Consensus pattern (57 bp):
TCATTTTCATTTGGAGAAAACAAAATTCATTTTCAAATGTTCCCCATTTCTCCATTT
Found at i:14147423 original size:52 final size:53
Alignment explanation
Indices: 14147312--14147424 Score: 131
Period size: 52 Copynumber: 2.2 Consensus size: 53
14147302 TTTCTCCATT
* * * *
14147312 TTCATTTTCATTTGGGAGAAAAATAAAATTCATTTTCAAATGTTTCCTATTTC
1 TTCATTTTCATTTGGGAGAAAAACAAAATCCATTTCCAAATGTTTCCTATTTA
* * * *
14147365 TCCATTTTCATTTTGGAG-AAAACCAAATCCATTTCCAAATGTTT-TTCATTTA
1 TTCATTTTCATTTGGGAGAAAAACAAAATCCATTTCCAAATGTTTCCT-ATTTA
14147417 TTCATTTT
1 TTCATTTT
14147425 TGCTATTTCT
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
51 1 0.02
52 33 0.66
53 16 0.32
ACGTcount: A:0.30, C:0.16, G:0.08, T:0.46
Consensus pattern (53 bp):
TTCATTTTCATTTGGGAGAAAAACAAAATCCATTTCCAAATGTTTCCTATTTA
Found at i:14148264 original size:16 final size:16
Alignment explanation
Indices: 14148245--14148278 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
14148235 ATATTAGTCT
14148245 TTCAATAAACTAGTTA
1 TTCAATAAACTAGTTA
14148261 TTCAATAAACTAGTTA
1 TTCAATAAACTAGTTA
14148277 TT
1 TT
14148279 GAAGTTGCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.41, C:0.12, G:0.06, T:0.41
Consensus pattern (16 bp):
TTCAATAAACTAGTTA
Found at i:14150327 original size:24 final size:24
Alignment explanation
Indices: 14150295--14150344 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
14150285 TCCCAATGGA
14150295 AATTAAGGATGAAATTCTTTGCCT
1 AATTAAGGATGAAATTCTTTGCCT
14150319 AATTAAGGATGAAATTCTTTGCCT
1 AATTAAGGATGAAATTCTTTGCCT
14150343 AA
1 AA
14150345 GTATTTGATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (24 bp):
AATTAAGGATGAAATTCTTTGCCT
Found at i:14158427 original size:42 final size:43
Alignment explanation
Indices: 14158337--14158439 Score: 102
Period size: 42 Copynumber: 2.4 Consensus size: 43
14158327 GTCCCGAACG
* * ** *
14158337 TGGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAGGCA
1 TGGTCTTACACGTAAATCAATATCGATGCCAATGTCCCAGACA
* *
14158380 GGGTCTTACACG-AAATCAGATA-CGATGCCAATGTCTCAGACA
1 TGGTCTTACACGTAAATCA-ATATCGATGCCAATGTCCCAGACA
* *
14158422 TGGTCTTATACATAAATC
1 TGGTCTTACACGTAAATC
14158440 TCAATCGAGG
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
42 30 0.62
43 18 0.38
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (43 bp):
TGGTCTTACACGTAAATCAATATCGATGCCAATGTCCCAGACA
Found at i:14167901 original size:27 final size:27
Alignment explanation
Indices: 14167871--14167928 Score: 91
Period size: 27 Copynumber: 2.1 Consensus size: 27
14167861 TTTCCTTCTG
14167871 CCTCCCCC-ACCGTCCCCTCTCCCTTTC
1 CCTCCCCCGACCGT-CCCTCTCCCTTTC
*
14167898 CCTCCCCCGATCGTCCCTCTCCCTTTC
1 CCTCCCCCGACCGTCCCTCTCCCTTTC
14167925 CCTC
1 CCTC
14167929 TCTTTTGTTG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 25 0.86
28 4 0.14
ACGTcount: A:0.03, C:0.64, G:0.05, T:0.28
Consensus pattern (27 bp):
CCTCCCCCGACCGTCCCTCTCCCTTTC
Found at i:14175998 original size:126 final size:127
Alignment explanation
Indices: 14175480--14176506 Score: 1825
Period size: 126 Copynumber: 8.1 Consensus size: 127
14175470 TTTTAAATTG
* * * **
14175480 ACTCATATTGCGAGAGGTGAGTT-AAGCCTTTTCATT-TTTGTTTTTCAAAATCAACTCATATTG
1 ACTCATATTGCGAGAGGTGGGTTGAA-CCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTG
* *
14175543 CTAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTACAATTTCTGTTTGTCAAGAATCA
65 CTAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAATTTCTGTCTGTCAAGAATCA
14175606 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
* *
14175671 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAAATTTTTGTTTGTCAAGAATCA
66 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTC-AATTTCTGTCTGTCAAGAATCA
*
14175734 ACTAATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
14175799 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAATTTCTGTCTGTCAAGAATCA
66 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAATTTCTGTCTGTCAAGAATCA
*
14175861 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATACC-ACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
*
14175925 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAATATCTGTCTGTCAAGAATCA
66 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAATTTCTGTCTGTCAAGAATCA
*
14175987 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATACC-ACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
14176051 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAATTTCTGTCTGTCAAGAATCA
66 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAATTTCTGTCTGTCAAGAATCA
*
14176113 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCT-GTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
*
14176177 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAATTTCTGTTTGTCAAGAATCA
66 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAATTTCTGTCTGTCAAGAATCA
14176239 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
*
14176304 TAGAGGTGAGTTGAGCCTCAGGATATGATGAGGTAATTTCAATTTCTGTCTGTCAAGAATCA
66 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAATTTCTGTCTGTCAAGAATCA
14176366 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
1 ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
*
14176431 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAATTTCTGT-TTTCAA-AATTCA
66 TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAATTTCTGTCTGTCAAGAA-TCA
14176492 ACTCATATTGCGAGA
1 ACTCATATTGCGAGA
14176507 AATGAGTTGA
Statistics
Matches: 873, Mismatches: 22, Indels: 12
0.96 0.02 0.01
Matches are distributed among these distances:
125 2 0.00
126 427 0.49
127 319 0.37
128 125 0.14
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.34
Consensus pattern (127 bp):
ACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTCCTACTTTTTCAAAATCAACTCATATTGC
TAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAATTTCTGTCTGTCAAGAATCA
Found at i:14176537 original size:72 final size:72
Alignment explanation
Indices: 14176408--14176559 Score: 184
Period size: 72 Copynumber: 2.1 Consensus size: 72
14176398 AATTCCTACT
* ** * *
14176408 TTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGATACGATGAGGTAATTTCAA
1 TTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATACGATAAGGTAATTTCAA
**
14176473 TTTCTG-
66 AATCTGC
*
14176479 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACT-C-ATTAAGGTATTTT
1 TTTTCAAAA-TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGA-TACGA-TAAGGTAATTT
14176542 CAAAATCTGC
63 CAAAATCTGC
14176552 TTTTCAAA
1 TTTTCAAA
14176560 TTAAGTTTCA
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
71 10 0.14
72 50 0.72
73 9 0.13
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.34
Consensus pattern (72 bp):
TTTTCAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGATACGATAAGGTAATTTCAA
AATCTGC
Found at i:14177248 original size:17 final size:17
Alignment explanation
Indices: 14177226--14177259 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
14177216 ATTTTGGGCC
14177226 CTAAACCAAACAACCCA
1 CTAAACCAAACAACCCA
14177243 CTAAACCAAACAACCCA
1 CTAAACCAAACAACCCA
14177260 ATAACCCGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.41, G:0.00, T:0.06
Consensus pattern (17 bp):
CTAAACCAAACAACCCA
Found at i:14177809 original size:17 final size:19
Alignment explanation
Indices: 14177789--14177830 Score: 56
Period size: 17 Copynumber: 2.4 Consensus size: 19
14177779 CCATATATAT
14177789 ATAATAAATAT-ATA-AAA
1 ATAATAAATATAATACAAA
14177806 ATAAT-AATATAATACAAA
1 ATAATAAATATAATACAAA
14177824 A-AATAAA
1 ATAATAAA
14177831 AAAAATAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 11 0.50
18 6 0.27
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.26
Consensus pattern (19 bp):
ATAATAAATATAATACAAA
Found at i:14177814 original size:20 final size:20
Alignment explanation
Indices: 14177789--14177829 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
14177779 CCATATATAT
*
14177789 ATAATA-AATATATAAAAATA
1 ATAATATAATACA-AAAAATA
14177809 ATAATATAATACAAAAAATA
1 ATAATATAATACAAAAAATA
14177829 A
1 A
14177830 AAAAAATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (20 bp):
ATAATATAATACAAAAAATA
Found at i:14182700 original size:25 final size:24
Alignment explanation
Indices: 14182659--14182741 Score: 87
Period size: 25 Copynumber: 3.3 Consensus size: 24
14182649 GGACACACCA
*
14182659 CAACTTGTATGAGCTTACCGATTT
1 CAACTCGTATGAGCTTACCGATTT
* * *
14182683 GTAGCTCGTGA-GAGCTTACCAATTCT
1 -CAACTCGT-ATGAGCTTACCGATT-T
14182709 CAACTCGTATGAGCTTACCGATTT
1 CAACTCGTATGAGCTTACCGATTT
14182733 ACAACTCGT
1 -CAACTCGT
14182742 GAGACCATAC
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
24 2 0.04
25 43 0.91
26 2 0.04
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (24 bp):
CAACTCGTATGAGCTTACCGATTT
Found at i:14183934 original size:43 final size:43
Alignment explanation
Indices: 14183881--14183964 Score: 134
Period size: 43 Copynumber: 2.0 Consensus size: 43
14183871 AAACACGAAC
*
14183881 GTGTGTCTCAACTGTGTATGACACACGG-CTAGGTGACACGGGT
1 GTGTGTCTCAACCGTGTATGACACACGGTC-AGGTGACACGGGT
*
14183924 GTGTGTCTCAACCGTGTGTGACACACGGTCAGGTGACACGG
1 GTGTGTCTCAACCGTGTATGACACACGGTCAGGTGACACGG
14183965 CCGTGTGCCT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
43 37 0.97
44 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.33, T:0.24
Consensus pattern (43 bp):
GTGTGTCTCAACCGTGTATGACACACGGTCAGGTGACACGGGT
Found at i:14183971 original size:43 final size:43
Alignment explanation
Indices: 14183880--14183976 Score: 133
Period size: 43 Copynumber: 2.3 Consensus size: 43
14183870 GAAACACGAA
* *
14183880 CGTGTGTCTCAACTGTGTATGACACACGGCTAGGTGACACGGG
1 CGTGTGTCTCAACCGTGTATGACACACGGCTAGGTGACACGGC
* *
14183923 TGTGTGTCTCAACCGTGTGTGACACACGG-TCAGGTGACACGGC
1 CGTGTGTCTCAACCGTGTATGACACACGGCT-AGGTGACACGGC
*
14183966 CGTGTGCCTCA
1 CGTGTGTCTCA
14183977 GCCATGTGCC
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 1 0.02
43 46 0.98
ACGTcount: A:0.19, C:0.26, G:0.32, T:0.24
Consensus pattern (43 bp):
CGTGTGTCTCAACCGTGTATGACACACGGCTAGGTGACACGGC
Found at i:14183986 original size:13 final size:13
Alignment explanation
Indices: 14183968--14183997 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
14183958 GACACGGCCG
14183968 TGTGCCTCAGCCA
1 TGTGCCTCAGCCA
14183981 TGTGCCTCAGCCA
1 TGTGCCTCAGCCA
14183994 TGTG
1 TGTG
14183998 TGACACACGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.13, C:0.33, G:0.27, T:0.27
Consensus pattern (13 bp):
TGTGCCTCAGCCA
Found at i:14185011 original size:15 final size:15
Alignment explanation
Indices: 14184977--14185013 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
14184967 TAATTTTATA
*
14184977 TTGAATTTTAATTTG
1 TTGAATTTTAATTAG
*
14184992 ATGAATTTTAATTAG
1 TTGAATTTTAATTAG
14185007 TTGAATT
1 TTGAATT
14185014 AATAGTTAGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (15 bp):
TTGAATTTTAATTAG
Found at i:14185881 original size:16 final size:16
Alignment explanation
Indices: 14185860--14185893 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
14185850 GGGTAATTTT
14185860 AATGTTTAAGGAATAA
1 AATGTTTAAGGAATAA
*
14185876 AATGTTTAAGTAATAA
1 AATGTTTAAGGAATAA
14185892 AA
1 AA
14185894 ATTTTGAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.32
Consensus pattern (16 bp):
AATGTTTAAGGAATAA
Found at i:14186426 original size:22 final size:22
Alignment explanation
Indices: 14186399--14186443 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
14186389 ATATGTTAGT
14186399 TAATATTTATGTTACGAATGAA
1 TAATATTTATGTTACGAATGAA
14186421 TAATATTTATGTTACGAATGAA
1 TAATATTTATGTTACGAATGAA
14186443 T
1 T
14186444 TAAATTGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.13, T:0.42
Consensus pattern (22 bp):
TAATATTTATGTTACGAATGAA
Found at i:14192249 original size:25 final size:25
Alignment explanation
Indices: 14192209--14192350 Score: 98
Period size: 25 Copynumber: 5.8 Consensus size: 25
14192199 ACACACTTTA
*
14192209 GCTCTT-ATGGGCTTCCCGATTATG
1 GCTCTTCATGAGCTTCCCGATTATG
* *
14192233 GCTCTTCATGAGCTTCCTG-TTAATTA
1 GCTCTTCATGAGCTTCCCGATT-A-TG
* **
14192259 GATCTTTGTGAGCTTCCCGA-TATG
1 GCTCTTCATGAGCTTCCCGATTATG
* * *
14192283 GCTC-ACTTGAACTTCCCGATATATG
1 GCTCTTCATGAGCTTCCCGAT-TATG
* *
14192308 GCTATTC-GGAGCTTCCCGATTAATG
1 GCTCTTCATGAGCTTCCCGATT-ATG
*
14192333 GCTCTTCA-GAGCTACCCG
1 GCTCTTCATGAGCTTCCCG
14192351 TATAGGCTCG
Statistics
Matches: 90, Mismatches: 19, Indels: 17
0.71 0.15 0.13
Matches are distributed among these distances:
23 11 0.12
24 13 0.14
25 48 0.53
26 18 0.20
ACGTcount: A:0.18, C:0.26, G:0.21, T:0.35
Consensus pattern (25 bp):
GCTCTTCATGAGCTTCCCGATTATG
Found at i:14196481 original size:14 final size:14
Alignment explanation
Indices: 14196462--14196490 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
14196452 CTCTTTTAGG
14196462 TAGCAAAAGTATAT
1 TAGCAAAAGTATAT
14196476 TAGCAAAAGTATAT
1 TAGCAAAAGTATAT
14196490 T
1 T
14196491 TTGACTCTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.48, C:0.07, G:0.14, T:0.31
Consensus pattern (14 bp):
TAGCAAAAGTATAT
Found at i:14198907 original size:29 final size:30
Alignment explanation
Indices: 14198849--14198907 Score: 84
Period size: 31 Copynumber: 2.0 Consensus size: 30
14198839 ATCTTAAAAT
*
14198849 TATATATGAACTTTGATTTAATGTGCAATTG
1 TATATATGAACTTTAATTTAATGT-CAATTG
*
14198880 TATATATGAACTTTAATTTGATGT-AATT
1 TATATATGAACTTTAATTTAATGTCAATT
14198908 ATACAGTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 4 0.15
31 22 0.85
ACGTcount: A:0.34, C:0.05, G:0.14, T:0.47
Consensus pattern (30 bp):
TATATATGAACTTTAATTTAATGTCAATTG
Found at i:14201959 original size:24 final size:24
Alignment explanation
Indices: 14201923--14201975 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
14201913 GGATATATTT
14201923 GAGGAGGAGGATACATGAGAGGTG
1 GAGGAGGAGGATACATGAGAGGTG
* * * * *
14201947 GAGGTGGATGATATATTAGTGGTG
1 GAGGAGGAGGATACATGAGAGGTG
14201971 GAGGA
1 GAGGA
14201976 TGCATTTGAG
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.30, C:0.02, G:0.47, T:0.21
Consensus pattern (24 bp):
GAGGAGGAGGATACATGAGAGGTG
Found at i:14206778 original size:13 final size:13
Alignment explanation
Indices: 14206760--14206785 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14206750 ATGATGTGCA
14206760 TTTGATTCAAATT
1 TTTGATTCAAATT
14206773 TTTGATTCAAATT
1 TTTGATTCAAATT
14206786 GTTGGTCCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.08, T:0.54
Consensus pattern (13 bp):
TTTGATTCAAATT
Found at i:14211854 original size:15 final size:15
Alignment explanation
Indices: 14211810--14211854 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
14211800 AGCAACTTGA
14211810 GCAACATTCTTTTGTT
1 GCAACATTCTTTTG-T
**
14211826 GCAA-ATTCACTTGT
1 GCAACATTCTTTTGT
14211840 GCAACATTCTTTTGT
1 GCAACATTCTTTTGT
14211855 TGAGTATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
14 5 0.21
15 15 0.62
16 4 0.17
ACGTcount: A:0.22, C:0.20, G:0.13, T:0.44
Consensus pattern (15 bp):
GCAACATTCTTTTGT
Found at i:14223280 original size:28 final size:28
Alignment explanation
Indices: 14223247--14223300 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
14223237 CAAACATCCA
* * *
14223247 CTTAAGATATTCCTTGGCAGATTTCCCT
1 CTTAAGAGAGTCCTTGGCAGACTTCCCT
*
14223275 CTTAAGAGAGTCTTTGGCAGACTTCC
1 CTTAAGAGAGTCCTTGGCAGACTTCC
14223301 TTTATTTTCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (28 bp):
CTTAAGAGAGTCCTTGGCAGACTTCCCT
Found at i:14225492 original size:16 final size:16
Alignment explanation
Indices: 14225471--14225509 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
14225461 ATTTGGTTCA
*
14225471 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
*
14225487 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
14225503 CTGTAAT
1 CTGTAAT
14225510 AAGTAATTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.31
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:14225580 original size:44 final size:46
Alignment explanation
Indices: 14225495--14225584 Score: 130
Period size: 44 Copynumber: 2.0 Consensus size: 46
14225485 GGCTGTAATT
*
14225495 GAATAGAGCTGTAATAAGTAATTCAACTGTTTGGTTGAATGGAATG
1 GAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATGGAATG
***
14225541 GAATAGAACTGTAAT-AGT-ATTCTTGTGTTTGGTTGAATGGAATG
1 GAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATGGAATG
14225585 ATGTTGTAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 23 0.57
45 3 0.08
46 14 0.35
ACGTcount: A:0.32, C:0.06, G:0.27, T:0.36
Consensus pattern (46 bp):
GAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATGGAATG
Done.