Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 49 of 295
Found at i:14225777 original size:17 final size:17
Alignment explanation
Indices: 14225755--14225787 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
14225745 AATTATTATT
14225755 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
14225772 AAATATAATTTAATAA
1 AAATATAATTTAATAA
14225788 CATTCTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:14228625 original size:21 final size:21
Alignment explanation
Indices: 14228587--14228626 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14228577 GACACGTTAT
*
14228587 TTTTTGTTCTTTTCTTCTTGG
1 TTTTTGTTCTTGTCTTCTTGG
*
14228608 TTTTTGTTCTTGTGTTCTT
1 TTTTTGTTCTTGTCTTCTT
14228627 CTTTTTGCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.00, C:0.12, G:0.15, T:0.72
Consensus pattern (21 bp):
TTTTTGTTCTTGTCTTCTTGG
Found at i:14228632 original size:21 final size:21
Alignment explanation
Indices: 14228586--14228632 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
14228576 GGACACGTTA
* *
14228586 TTTTTTGTTCTTTTCTTCTTG
1 TTTTTTGTTCTTGTCTTCTTC
* *
14228607 GTTTTTGTTCTTGTGTTCTTC
1 TTTTTTGTTCTTGTCTTCTTC
14228628 TTTTT
1 TTTTT
14228633 GCTTTTTGGA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.00, C:0.13, G:0.13, T:0.74
Consensus pattern (21 bp):
TTTTTTGTTCTTGTCTTCTTC
Found at i:14232883 original size:32 final size:32
Alignment explanation
Indices: 14232833--14232897 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
14232823 TTGCAATTCG
* *
14232833 TTTTATATTTGCCTTTGGCCTTTACATCTATC
1 TTTTATATATGCCCTTGGCCTTTACATCTATC
14232865 TTTTATATATGCCCTTGGCCTTTACATCTATC
1 TTTTATATATGCCCTTGGCCTTTACATCTATC
14232897 T
1 T
14232898 CATCATCTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.17, C:0.23, G:0.09, T:0.51
Consensus pattern (32 bp):
TTTTATATATGCCCTTGGCCTTTACATCTATC
Found at i:14234081 original size:15 final size:15
Alignment explanation
Indices: 14234061--14234108 Score: 71
Period size: 15 Copynumber: 3.2 Consensus size: 15
14234051 TTATCCTCAG
*
14234061 TTAGCAAACCC-TATT
1 TTAGCAAACCCGT-CT
14234076 TTAGCAAACCCGTCT
1 TTAGCAAACCCGTCT
14234091 TTAGCAAACCCGTCT
1 TTAGCAAACCCGTCT
14234106 TTA
1 TTA
14234109 ATAACTAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 30 0.97
16 1 0.03
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (15 bp):
TTAGCAAACCCGTCT
Found at i:14234304 original size:40 final size:41
Alignment explanation
Indices: 14234262--14234622 Score: 326
Period size: 41 Copynumber: 8.9 Consensus size: 41
14234252 CGTTTACTTA
*
14234262 AAAACGCCAC-AAAAA-TGAGAAATAGCGACGTTTTTATCT
1 AAAACGCCACTAAAAACTGAGAAATAGCGGCGTTTTTATCT
* ** *
14234301 AAAACGCCACTAAAAACTAATCAATAGCGGCGTTTTTGTCT
1 AAAACGCCACTAAAAACTGAGAAATAGCGGCGTTTTTATCT
* * * ** *
14234342 AAAAC-ACACTAAATACAGATCAATAGCGGTGTTTTTATCT
1 AAAACGCCACTAAAAACTGAGAAATAGCGGCGTTTTTATCT
* * * *
14234382 -AAACGCCACTAAAAACTGGGGAAATAGTGGC-ATTTTAGTCC
1 AAAACGCCACTAAAAACT-GAGAAATAGCGGCGTTTTTA-TCT
* * ** *
14234423 CAAACGCCACT-AAAACTAATCAATAGCGGTGTTTTTATCT
1 AAAACGCCACTAAAAACTGAGAAATAGCGGCGTTTTTATCT
*
14234463 AAAACGCCACTAAAAACTGGAGAAATAGCGGCGTTTTTGTC-
1 AAAACGCCACTAAAAACT-GAGAAATAGCGGCGTTTTTATCT
* * * * * *
14234504 CAAACGCCAATAAAAACTGATAAATAGTGGCATTTTTATCC
1 AAAACGCCACTAAAAACTGAGAAATAGCGGCGTTTTTATCT
*
14234545 AAAACGCCACTAAAAACTAGAGAAATAGCGGCGTTTTTGTC-
1 AAAACGCCACTAAAAACT-GAGAAATAGCGGCGTTTTTATCT
* * ** *
14234586 CAAACGCCACT-AAAATTGATCAATAGCGGCATTTTTA
1 AAAACGCCACTAAAAACTGAGAAATAGCGGCGTTTTTA
14234623 GGCCCAAACG
Statistics
Matches: 258, Mismatches: 53, Indels: 22
0.77 0.16 0.07
Matches are distributed among these distances:
39 30 0.12
40 90 0.35
41 93 0.36
42 45 0.17
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (41 bp):
AAAACGCCACTAAAAACTGAGAAATAGCGGCGTTTTTATCT
Found at i:14234488 original size:82 final size:81
Alignment explanation
Indices: 14234282--14234622 Score: 411
Period size: 82 Copynumber: 4.2 Consensus size: 81
14234272 AAAAATGAGA
* * ** *
14234282 AATAGCGACGTTTTTATCTAAAACGCCACTAAAAACT-AATCAATAGCGGCGTTTTTGTCTAAAA
1 AATAGCGGCGTTTTTATCTAAAACGCCACTAAAAACTGGAGAAATAGCGGCGTTTTTGTC-CAAA
*
14234346 C-ACACTAAATAC-AGATC
65 CGCCACTAAA-ACTA-ATC
* * * * *
14234363 AATAGCGGTGTTTTTATCT-AAACGCCACTAAAAACTGGGGAAATAGTGGCATTTTAGTCCCAAA
1 AATAGCGGCGTTTTTATCTAAAACGCCACTAAAAACTGGAGAAATAGCGGCGTTTTTGT-CCAAA
14234427 CGCCACTAAAACTAATC
65 CGCCACTAAAACTAATC
*
14234444 AATAGCGGTGTTTTTATCTAAAACGCCACTAAAAACTGGAGAAATAGCGGCGTTTTTGTCCAAAC
1 AATAGCGGCGTTTTTATCTAAAACGCCACTAAAAACTGGAGAAATAGCGGCGTTTTTGTCCAAAC
* * *
14234509 GCCAATAAAAACTGATA
66 GCCACT-AAAACTAATC
* * * *
14234526 AATAGTGGCATTTTTATCCAAAACGCCACTAAAAACTAGAGAAATAGCGGCGTTTTTGTCCAAAC
1 AATAGCGGCGTTTTTATCTAAAACGCCACTAAAAACTGGAGAAATAGCGGCGTTTTTGTCCAAAC
* *
14234591 GCCACTAAAATTGATC
66 GCCACTAAAACTAATC
*
14234607 AATAGCGGCATTTTTA
1 AATAGCGGCGTTTTTA
14234623 GGCCCAAACG
Statistics
Matches: 227, Mismatches: 27, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
80 17 0.07
81 93 0.41
82 117 0.52
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.27
Consensus pattern (81 bp):
AATAGCGGCGTTTTTATCTAAAACGCCACTAAAAACTGGAGAAATAGCGGCGTTTTTGTCCAAAC
GCCACTAAAACTAATC
Found at i:14235127 original size:34 final size:36
Alignment explanation
Indices: 14235052--14235136 Score: 102
Period size: 34 Copynumber: 2.3 Consensus size: 36
14235042 TTAAGGCCTG
14235052 TGGTTTAGGGTTGAAATGGTAGTATATATTTTAAGTTTA
1 TGGTTTAGGGTTGAAATGGTAGTATATA---TAAGTTTA
* *
14235091 TGGTTTAGGGTT-CAATGGTAGTATGTA-AAGTTTA
1 TGGTTTAGGGTTGAAATGGTAGTATATATAAGTTTA
*
14235125 TGGTTTGGGGTT
1 TGGTTTAGGGTT
14235137 TGTTATTTTG
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
34 18 0.42
38 13 0.30
39 12 0.28
ACGTcount: A:0.24, C:0.01, G:0.31, T:0.45
Consensus pattern (36 bp):
TGGTTTAGGGTTGAAATGGTAGTATATATAAGTTTA
Found at i:14235246 original size:22 final size:22
Alignment explanation
Indices: 14235221--14235269 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
14235211 GTTTACGGTA
*
14235221 TTAGTGT-TTAAAGTTTTAAGGG
1 TTAGTGTATT-AAGGTTTAAGGG
* *
14235243 TTAGGGTATTAGGGTTTAAGGG
1 TTAGTGTATTAAGGTTTAAGGG
14235265 TTAGT
1 TTAGT
14235270 TGATTAAATG
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 20 0.91
23 2 0.09
ACGTcount: A:0.24, C:0.00, G:0.33, T:0.43
Consensus pattern (22 bp):
TTAGTGTATTAAGGTTTAAGGG
Found at i:14235253 original size:30 final size:31
Alignment explanation
Indices: 14235196--14235261 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 31
14235186 GATTTGGTGT
*
14235196 TTTAAAGTGTTTAGGGTTTACGGTATTAGTG
1 TTTAAAGTGTTTAGGGTTTACGGTATTAGGG
*
14235227 TTTAAAGT-TTTAAGGG-TTAGGGTATTAGGG
1 TTTAAAGTGTTT-AGGGTTTACGGTATTAGGG
14235257 TTTAA
1 TTTAA
14235262 GGGTTAGTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
30 20 0.62
31 12 0.38
ACGTcount: A:0.26, C:0.02, G:0.29, T:0.44
Consensus pattern (31 bp):
TTTAAAGTGTTTAGGGTTTACGGTATTAGGG
Found at i:14236106 original size:41 final size:41
Alignment explanation
Indices: 14236049--14236155 Score: 133
Period size: 41 Copynumber: 2.6 Consensus size: 41
14236039 GTCTCCAAGG
* * * *
14236049 GAATTAGTGGCGTTTTTAAAAATATCGCCGCTAAAAATAGA
1 GAATTAGTGGCTTTTTTAAAAAAAGCACCGCTAAAAATAGA
*
14236090 GAATTAGTGGCTTTTTTAAAAAAAGCACTGCTAAAAATAGA
1 GAATTAGTGGCTTTTTTAAAAAAAGCACCGCTAAAAATAGA
* *
14236131 GAATTAGCGGCGCTTTTTTTAAAAA
1 GAATTAG-TG-GCTTTTTTAAAAAA
14236156 CTCCGCTAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
41 43 0.75
42 1 0.02
43 13 0.23
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.31
Consensus pattern (41 bp):
GAATTAGTGGCTTTTTTAAAAAAAGCACCGCTAAAAATAGA
Found at i:14244002 original size:241 final size:242
Alignment explanation
Indices: 14243578--14244065 Score: 906
Period size: 241 Copynumber: 2.0 Consensus size: 242
14243568 TTAAGGTTAT
*
14243578 ATAAATATTCAATAGTAAATGAGCTCGATAGAACTTTTTGCAAGTCTTTTTGAATTTTTTTAAGA
1 ATAAATATTCAATAGTAAATAAGCTCGATAGAACTTTTTGCAAGTCTTTTTGAATTTTTTTAAGA
*
14243643 TTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATCTAAGGC
66 TTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGC
* *
14243708 AACCCGTCAGGTTTCCATCCTATATACATTGAATCTTTAAAATATTTAAAATAAGGTTGGAGAGA
131 AACCCGTCAGGTTTCCAGCCTATATACATTGAATCTTTAAAATATTTAAAATAAGGTTGGAAAGA
*
14243773 AGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTA
196 AGGCCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTA
*
14243820 ATAAATATTCAATAGTAAATAAGCTCGATAGAACTTTTTTCAAGTCTTTTTGAA-TTTTTTAAGA
1 ATAAATATTCAATAGTAAATAAGCTCGATAGAACTTTTTGCAAGTCTTTTTGAATTTTTTTAAGA
14243884 TTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGC
66 TTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGC
*
14243949 AACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAATAAGGTTGGAAAGA
131 AACCCGTCAGGTTTCCAGCCTATATACATTGAATCTTTAAAATATTTAAAATAAGGTTGGAAAGA
14244014 AGGCCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTA
196 AGGCCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTA
14244061 ATAAA
1 ATAAA
14244066 ATTAATTCAT
Statistics
Matches: 239, Mismatches: 7, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
241 187 0.78
242 52 0.22
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34
Consensus pattern (242 bp):
ATAAATATTCAATAGTAAATAAGCTCGATAGAACTTTTTGCAAGTCTTTTTGAATTTTTTTAAGA
TTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGCTCGATATAAGGC
AACCCGTCAGGTTTCCAGCCTATATACATTGAATCTTTAAAATATTTAAAATAAGGTTGGAAAGA
AGGCCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTA
Found at i:14245452 original size:17 final size:17
Alignment explanation
Indices: 14245426--14245469 Score: 70
Period size: 17 Copynumber: 2.5 Consensus size: 17
14245416 AGTTCAAGCA
14245426 AATATAAAAACTTGATC
1 AATATAAAAACTTGATC
*
14245443 AATATCAAAACTTGATC
1 AATATAAAAACTTGATC
14245460 AAATATAAAA
1 -AATATAAAA
14245470 TTTTAATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 16 0.67
18 8 0.33
ACGTcount: A:0.57, C:0.11, G:0.05, T:0.27
Consensus pattern (17 bp):
AATATAAAAACTTGATC
Found at i:14247033 original size:44 final size:44
Alignment explanation
Indices: 14246917--14247009 Score: 147
Period size: 44 Copynumber: 2.2 Consensus size: 44
14246907 GGGAATAGAT
*
14246917 TTAGGGAAA--AAGTATGGGG-AAAGGGGGGATTTGGGGAAAATG
1 TTAGGGAAATGAA-TATGGGGAAAAGAGGGGATTTGGGGAAAATG
14246959 TTAGGGAAATGAATATGGGGAAAAGAGGGGATTTGGGGAAAATG
1 TTAGGGAAATGAATATGGGGAAAAGAGGGGATTTGGGGAAAATG
14247003 TTAGGGA
1 TTAGGGA
14247010 TTTCGAGTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
42 9 0.19
43 7 0.15
44 31 0.66
ACGTcount: A:0.37, C:0.00, G:0.43, T:0.20
Consensus pattern (44 bp):
TTAGGGAAATGAATATGGGGAAAAGAGGGGATTTGGGGAAAATG
Found at i:14247982 original size:14 final size:14
Alignment explanation
Indices: 14247945--14247985 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
14247935 CCTAAAAATT
14247945 AAATCATAAACCCC
1 AAATCATAAACCCC
* * *
14247959 ACACCCTAAACCCC
1 AAATCATAAACCCC
14247973 AAATCATAAACCC
1 AAATCATAAACCC
14247986 TAGATCTTAG
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.41, G:0.00, T:0.12
Consensus pattern (14 bp):
AAATCATAAACCCC
Found at i:14248144 original size:15 final size:14
Alignment explanation
Indices: 14248108--14248159 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
14248098 CCCATAAACA
14248108 CTAAACCCTTAACC
1 CTAAACCCTTAACC
*
14248122 CCAAACCCTTACACC
1 CTAAACCCTTA-ACC
* * *
14248137 TTAAACCCCTAAAC
1 CTAAACCCTTAACC
*
14248151 CTAACCCCT
1 CTAAACCCT
14248160 AAATCTTAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
14 18 0.62
15 11 0.38
ACGTcount: A:0.35, C:0.46, G:0.00, T:0.19
Consensus pattern (14 bp):
CTAAACCCTTAACC
Found at i:14248247 original size:47 final size:47
Alignment explanation
Indices: 14248170--14248302 Score: 126
Period size: 46 Copynumber: 2.8 Consensus size: 47
14248160 AAATCTTAAA
* *
14248170 TCATAATCCCTAAACCCATAATTCATCATAAACCTTCAAATAC-TAGGTAAC
1 TCATAAACCTTAAACCCATAA---ATCATAAACCTT-AAA-ACATAGGTAAC
* * * *
14248221 TCTTAAACCTTAAACCC-TAAATCATAAATCTTAAACCATAGTTAAC
1 TCATAAACCTTAAACCCATAAATCATAAACCTTAAAACATAGGTAAC
* * *
14248267 TCATAAACCTTAAACCCATATATCTTAAACCATAAA
1 TCATAAACCTTAAACCCATAAATCATAAACCTTAAA
14248303 CCTTAAACTA
Statistics
Matches: 69, Mismatches: 11, Indels: 8
0.78 0.12 0.09
Matches are distributed among these distances:
45 1 0.01
46 26 0.38
47 25 0.36
50 3 0.04
51 14 0.20
ACGTcount: A:0.44, C:0.26, G:0.02, T:0.29
Consensus pattern (47 bp):
TCATAAACCTTAAACCCATAAATCATAAACCTTAAAACATAGGTAAC
Found at i:14248255 original size:14 final size:14
Alignment explanation
Indices: 14248222--14248315 Score: 70
Period size: 14 Copynumber: 6.9 Consensus size: 14
14248212 CTAGGTAACT
*
14248222 CTTAAACCTTAAAC
1 CTTAAACCATAAAC
* * *
14248236 CCTAAATCATAAAT
1 CTTAAACCATAAAC
14248250 CTTAAACCAT--A-
1 CTTAAACCATAAAC
*
14248261 GTT-AACTCATAAAC
1 CTTAAAC-CATAAAC
* *
14248275 CTTAAACCCATATAT
1 CTTAAA-CCATAAAC
14248290 CTTAAACCATAAAC
1 CTTAAACCATAAAC
*
14248304 CTTAAACTATAA
1 CTTAAACCATAA
14248316 TGATAATTAA
Statistics
Matches: 61, Mismatches: 13, Indels: 12
0.71 0.15 0.14
Matches are distributed among these distances:
10 3 0.05
11 5 0.08
12 1 0.02
13 1 0.02
14 37 0.61
15 13 0.21
16 1 0.02
ACGTcount: A:0.46, C:0.24, G:0.01, T:0.29
Consensus pattern (14 bp):
CTTAAACCATAAAC
Found at i:14248278 original size:25 final size:24
Alignment explanation
Indices: 14248216--14248282 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 24
14248206 CAAATACTAG
* *
14248216 GTAACTCTTAAACCTTAAACCCTA
1 GTAACTCATAAACCTTAAACCATA
*
14248240 --AA-TCATAAATCTTAAACCATA
1 GTAACTCATAAACCTTAAACCATA
14248261 GTTAACTCATAAACCTTAAACC
1 G-TAACTCATAAACCTTAAACC
14248283 CATATATCTT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
21 16 0.46
22 2 0.06
24 2 0.06
25 15 0.43
ACGTcount: A:0.43, C:0.25, G:0.03, T:0.28
Consensus pattern (24 bp):
GTAACTCATAAACCTTAAACCATA
Found at i:14248597 original size:41 final size:41
Alignment explanation
Indices: 14248470--14248597 Score: 109
Period size: 41 Copynumber: 3.1 Consensus size: 41
14248460 GTTATATGAC
* * * *
14248470 TTTTAGCGGCGTTTTACCAAAAGCGCCACCAATGCTCTG-G
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGTG
* * * ** * *
14248510 TCTTTAGTGGCATTTTTTA-CTAAAACGATGTTATTGCTTTGT-
1 T-TTTAGCGGC--GTTTTACCAAAAACGCCGCTATTGCTCTGTG
14248552 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGTG
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGTG
14248593 TTTTA
1 TTTTA
14248598 CAATTTTTGC
Statistics
Matches: 64, Mismatches: 18, Indels: 11
0.69 0.19 0.12
Matches are distributed among these distances:
39 5 0.08
40 19 0.30
41 21 0.33
42 14 0.22
43 5 0.08
ACGTcount: A:0.21, C:0.20, G:0.20, T:0.39
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGTG
Found at i:14248636 original size:12 final size:12
Alignment explanation
Indices: 14248621--14248646 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14248611 GTTTTTTTAT
14248621 AAAATGCCGCTA
1 AAAATGCCGCTA
14248633 AAAATGCCGCTA
1 AAAATGCCGCTA
14248645 AA
1 AA
14248647 GCCCATTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.23, G:0.15, T:0.15
Consensus pattern (12 bp):
AAAATGCCGCTA
Found at i:14249306 original size:9 final size:9
Alignment explanation
Indices: 14249292--14249617 Score: 149
Period size: 9 Copynumber: 36.2 Consensus size: 9
14249282 TATTATTTAA
14249292 TACATAACT
1 TACATAACT
14249301 TACATAACT
1 TACATAACT
*
14249310 TATATAA--
1 TACATAACT
14249317 TACATAACT
1 TACATAACT
* *
14249326 TACATCATT
1 TACATAACT
14249335 TACATAACT
1 TACATAACT
*
14249344 GACATAA--
1 TACATAACT
14249351 TACATAACT
1 TACATAACT
*
14249360 TACATAATT
1 TACATAACT
* *
14249369 TAAAGATCAAAT
1 T--ACAT-AACT
**
14249381 TTTATAACT
1 TACATAACT
*
14249390 TACATAATT
1 TACATAACT
14249399 TACATAACT
1 TACATAACT
14249408 TACATAA--
1 TACATAACT
* *
14249415 TACATGAGT
1 TACATAACT
*
14249424 TACATAATT
1 TACATAACT
* *
14249433 TAAAGATCAAAAT
1 T--ACAT--AACT
* *
14249446 TTCAAAACT
1 TACATAACT
14249455 TACATAA--
1 TACATAACT
14249462 TACATAACT
1 TACATAACT
*
14249471 TACATAATT
1 TACATAACT
* *
14249480 TAAAGATCAAAT
1 T--ACAT-AACT
*
14249492 TTCATAACT
1 TACATAACT
14249501 TACATAA--
1 TACATAACT
14249508 TACATAACT
1 TACATAACT
*
14249517 TACATAATT
1 TACATAACT
* *
14249526 TAAAGATCAAAT
1 T--ACAT-AACT
* *
14249538 TTCATAGCT
1 TACATAACT
*
14249547 TACATAATT
1 TACATAACT
*
14249556 TAAATAACT
1 TACATAACT
14249565 TACATAA--
1 TACATAACT
*
14249572 TAAATAACT
1 TACATAACT
14249581 TACATAA--
1 TACATAACT
*
14249588 TACATGACT
1 TACATAACT
14249597 TACATAACT
1 TACATAACT
*
14249606 TAAATATACT
1 TACATA-ACT
14249616 TA
1 TA
14249618 TAAATAAACA
Statistics
Matches: 235, Mismatches: 54, Indels: 55
0.68 0.16 0.16
Matches are distributed among these distances:
7 44 0.19
9 151 0.64
10 11 0.05
11 13 0.06
12 12 0.05
13 4 0.02
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (9 bp):
TACATAACT
Found at i:14249322 original size:16 final size:16
Alignment explanation
Indices: 14249301--14249603 Score: 151
Period size: 16 Copynumber: 19.0 Consensus size: 16
14249291 ATACATAACT
*
14249301 TACATAACTTATATAA
1 TACATAACTTACATAA
*
14249317 TACATAACTTACATCATT
1 TACATAACTTACAT-A-A
*
14249335 TACATAACTGACATAA
1 TACATAACTTACATAA
14249351 TACATAACTTACATAA
1 TACATAACTTACATAA
** **
14249367 TTTA-AAGAT-CA-AA
1 TACATAACTTACATAA
**
14249380 TTTTATAACTTACATAA
1 -TACATAACTTACATAA
14249397 TTTACATAACTTACATAA
1 --TACATAACTTACATAA
* *
14249415 TACATGAGTTACATAA
1 TACATAACTTACATAA
** ** *
14249431 TTTA-AAGAT-CAAAA
1 TACATAACTTACATAA
* *
14249445 TTTCAAAACTTACATAA
1 -TACATAACTTACATAA
14249462 TACATAACTTACATAA
1 TACATAACTTACATAA
** **
14249478 TTTA-AAGAT-CA-AA
1 TACATAACTTACATAA
*
14249491 TTTCATAACTTACATAA
1 -TACATAACTTACATAA
14249508 TACATAACTTACATAA
1 TACATAACTTACATAA
** **
14249524 TTTA-AAGAT-CA-AA
1 TACATAACTTACATAA
* *
14249537 TTTCATAGCTTACATAA
1 -TACATAACTTACATAA
*
14249554 TTTAAATAACTTACATAA
1 --TACATAACTTACATAA
*
14249572 TAAATAACTTACATAA
1 TACATAACTTACATAA
*
14249588 TACATGACTTACATAA
1 TACATAACTTACATAA
14249604 CTTAAATATA
Statistics
Matches: 221, Mismatches: 47, Indels: 38
0.72 0.15 0.12
Matches are distributed among these distances:
13 6 0.03
14 20 0.09
15 23 0.10
16 118 0.53
17 12 0.05
18 42 0.19
ACGTcount: A:0.48, C:0.15, G:0.03, T:0.35
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:14249338 original size:34 final size:34
Alignment explanation
Indices: 14249292--14249603 Score: 215
Period size: 34 Copynumber: 9.7 Consensus size: 34
14249282 TATTATTTAA
* *
14249292 TACATAACTTACATAACTTATATAATACATAACT
1 TACATAATTTACATAACTTACATAATACATAACT
* *
14249326 TACATCATTTACATAACTGACATAATACATAACT
1 TACATAATTTACATAACTTACATAATACATAACT
**
14249360 TACATAATTTA-A-AGA--T-CA-AATTTTATAACT
1 TACATAATTTACATA-ACTTACATAA-TACATAACT
* *
14249390 TACATAATTTACATAACTTACATAATACATGAGT
1 TACATAATTTACATAACTTACATAATACATAACT
* * *
14249424 TACATAATTTA-A-AGA--T-CAAAATTTCAAAACT
1 TACATAATTTACATA-ACTTACATAA-TACATAACT
** **
14249455 TACATAA--TACATAACTTACATAATTTA-AAGA
1 TACATAATTTACATAACTTACATAATACATAACT
14249486 T-CA-AATTT-CATAACTTACATAATACATAACT
1 TACATAATTTACATAACTTACATAATACATAACT
* *
14249517 TACATAATTTA-A-AGA--T-CA-AATTTCATAGCT
1 TACATAATTTACATA-ACTTACATAA-TACATAACT
* *
14249547 TACATAATTTAAATAACTTACATAATAAATAACT
1 TACATAATTTACATAACTTACATAATACATAACT
*
14249581 TACATAA--TACATGACTTACATAA
1 TACATAATTTACATAACTTACATAA
14249604 CTTAAATATA
Statistics
Matches: 217, Mismatches: 32, Indels: 60
0.70 0.10 0.19
Matches are distributed among these distances:
29 8 0.04
30 64 0.29
31 26 0.12
32 25 0.12
33 17 0.08
34 73 0.34
35 4 0.02
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (34 bp):
TACATAATTTACATAACTTACATAATACATAACT
Found at i:14249403 original size:64 final size:65
Alignment explanation
Indices: 14249319--14249478 Score: 245
Period size: 64 Copynumber: 2.5 Consensus size: 65
14249309 TTATATAATA
* *
14249319 CATAACTTACATCATTTACATAACTGACATAATACATAACTTACATAATTTAAAGATC-AAATTT
1 CATAACTTACATAATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAAATTT
* * *
14249383 TATAACTTACATAATTTACATAACTTACATAATACATGAGTTACATAATTTAAAGATCAAAATTT
1 CATAACTTACATAATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAAATTT
*
14249448 CAAAACTTACATAA--TACATAACTTACATAAT
1 CATAACTTACATAATTTACATAACTTACATAAT
14249479 TTAAAGATCA
Statistics
Matches: 88, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
63 17 0.19
64 53 0.60
65 18 0.20
ACGTcount: A:0.47, C:0.16, G:0.03, T:0.34
Consensus pattern (65 bp):
CATAACTTACATAATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAAATTT
Found at i:14249509 original size:46 final size:46
Alignment explanation
Indices: 14249395--14249572 Score: 275
Period size: 46 Copynumber: 3.8 Consensus size: 46
14249385 TAACTTACAT
* *
14249395 AATTTACATAACTTACATAATACATGAGTTACATAATTTAAAGATCAA
1 AATTT-CATAACTTACATAATACATAACTTACATAATTTAAAGATC-A
*
14249443 AATTTCAAAACTTACATAATACATAACTTACATAATTTAAAGATCA
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
14249489 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
* *
14249535 AATTTCATAGCTTACATAATTTAAATAACTTACATAAT
1 AATTTCATAACTTACATAA--TACATAACTTACATAAT
14249573 AAATAACTTA
Statistics
Matches: 122, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
46 64 0.52
47 37 0.30
48 21 0.17
ACGTcount: A:0.48, C:0.14, G:0.03, T:0.35
Consensus pattern (46 bp):
AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
Found at i:14249520 original size:93 final size:94
Alignment explanation
Indices: 14249395--14249572 Score: 279
Period size: 93 Copynumber: 1.9 Consensus size: 94
14249385 TAACTTACAT
* *
14249395 AATTTACATAACTTACATAATACATGAGTTACATAATTTAAAGATCAAAATTTCAAAACTTACAT
1 AATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATC-AAATTTCAAAACTTACAT
*
14249460 AA-TACATAACTTACATAATTTAAAGATCA
65 AATTAAATAACTTACATAATTTAAAGATCA
* *
14249489 AATTT-CATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAGCTTACATA
1 AATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCAAAACTTACATA
14249553 ATTTAAATAACTTACATAAT
66 A-TTAAATAACTTACATAAT
14249573 AAATAACTTA
Statistics
Matches: 77, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
92 18 0.23
93 38 0.49
94 21 0.27
ACGTcount: A:0.48, C:0.14, G:0.03, T:0.35
Consensus pattern (94 bp):
AATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCAAAACTTACATA
ATTAAATAACTTACATAATTTAAAGATCA
Found at i:14251227 original size:16 final size:15
Alignment explanation
Indices: 14251206--14251237 Score: 55
Period size: 16 Copynumber: 2.1 Consensus size: 15
14251196 GTTGGATCTG
14251206 AAATCTTGTTTATGTT
1 AAATCTTGTTTA-GTT
14251222 AAATCTTGTTTAGTT
1 AAATCTTGTTTAGTT
14251237 A
1 A
14251238 TGGGAAGATG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.28, C:0.06, G:0.12, T:0.53
Consensus pattern (15 bp):
AAATCTTGTTTAGTT
Found at i:14253698 original size:13 final size:13
Alignment explanation
Indices: 14253680--14253704 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14253670 TATTTTAATA
14253680 TTATTTTGTGTGT
1 TTATTTTGTGTGT
14253693 TTATTTTGTGTG
1 TTATTTTGTGTG
14253705 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:14255322 original size:41 final size:39
Alignment explanation
Indices: 14255277--14255587 Score: 401
Period size: 41 Copynumber: 7.6 Consensus size: 39
14255267 CGGACGTTAC
14255277 GTCTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTG-A-TAATTCAGACTTTAA
14255318 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGATA-A-TTCAGACTTTAA
*
14255359 GTCTAGCAGGCTTAATGCCGGTGAGATATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGT--GATAATTCAGACTTTAA
14255400 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGATA-A-TTCAGACTTTAA
14255441 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGATA-A-TTCAGACTTTAA
* *
14255482 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAT
1 GTCTAGCAGGCTTAATGCCGGTGATA-A-TTCAGACTTTAA
*
14255523 GTCTAGCAGGC-TAAGTGCCGGTGTACTGAA-TCAGGCTTTAA
1 GTCTAGCAGGCTTAA-TGCCGGTG-A-T-AATTCAGACTTTAA
* **
14255564 GCCTAGCAGGCAAAATGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGA
14255588 ATCTGTTTAA
Statistics
Matches: 248, Mismatches: 11, Indels: 23
0.88 0.04 0.08
Matches are distributed among these distances:
39 6 0.02
40 6 0.02
41 226 0.91
42 3 0.01
43 6 0.02
44 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (39 bp):
GTCTAGCAGGCTTAATGCCGGTGATAATTCAGACTTTAA
Found at i:14255377 original size:82 final size:82
Alignment explanation
Indices: 14255277--14255587 Score: 468
Period size: 82 Copynumber: 3.8 Consensus size: 82
14255267 CGGACGTTAC
14255277 GTCTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
14255342 TACATTTCAGACTTTAA
66 TACATTTCAGACTTTAA
*
14255359 GTCTAGCAGGCTTAATGCCGGTG-AGATATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
1 GTCTAGCAGGCTTAATGCCGGTGAAG-TAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
14255423 ATACATTTCAGACTTTAA
65 ATACATTTCAGACTTTAA
*
14255441 GTCTAGCAGGCTTAATGCCGGTGATA-TATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
1 GTCTAGCAGGCTTAATGCCGGTGA-AGTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
* *
14255505 ATACATTTCAGACTATAT
65 ATACATTTCAGACTTTAA
* * * * **
14255523 GTCTAGCAGGC-TAAGTGCCGGTGTACTGAA-TCAGGCTTTAAGCCTAGCAGGCAAAATGCCGGT
1 GTCTAGCAGGCTTAA-TGCCGGTGAAGT-AATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGT
14255586 GA
64 GA
14255588 ATCTGTTTAA
Statistics
Matches: 214, Mismatches: 9, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
81 6 0.03
82 206 0.96
83 1 0.00
84 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (82 bp):
GTCTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
TACATTTCAGACTTTAA
Found at i:14255496 original size:123 final size:123
Alignment explanation
Indices: 14255277--14255587 Score: 452
Period size: 123 Copynumber: 2.5 Consensus size: 123
14255267 CGGACGTTAC
14255277 GTCTAGCAGGCTTAATGCCGGTGAAGTA-A-TTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGT
1 GTCTAGCAGGCTTAATGCCGGTG-A-TACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGT
* *
14255340 GATACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGAGATATTTCAGACTTTAA
64 GATACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGAGACATTTCAGACTATAA
14255400 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
* * *
14255465 TATATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAT
66 TACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGAGACATTTCAGACTATAA
* * * **
14255523 GTCTAGCAGGC-TAAGTGCCGGTG-TAC-TGAATCAGGCTTTAAGCCTAGCAGGCAAAATGCCGG
1 GTCTAGCAGGCTTAA-TGCCGGTGATACAT--TTCAGACTTTAAGTCTAGCAGGCTTAATGCCGG
14255585 TGA
63 TGA
14255588 ATCTGTTTAA
Statistics
Matches: 173, Mismatches: 10, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
121 3 0.02
122 8 0.05
123 162 0.94
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (123 bp):
GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
TACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGAGACATTTCAGACTATAA
Found at i:14261462 original size:13 final size:13
Alignment explanation
Indices: 14261444--14261468 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14261434 TATTTTAATA
14261444 TTATTTTGTGTGT
1 TTATTTTGTGTGT
14261457 TTATTTTGTGTG
1 TTATTTTGTGTG
14261469 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:14263084 original size:41 final size:40
Alignment explanation
Indices: 14263039--14263351 Score: 409
Period size: 41 Copynumber: 7.7 Consensus size: 40
14263029 CGGACGTTAC
14263039 GTCTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGAA-TAATTCAGACTTTAA
14263080 GTCTAGCAGGCTTAATGCCGGTG-ATACATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGAATA-A-TTCAGACTTTAA
*
14263121 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGA-ATAATTCAGACTTTAA
*
14263162 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGA-ATAATTCAGACTTTAA
*
14263203 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGA-ATAATTCAGACTTTAA
* *
14263244 GTCTAGCAGGCTTAATGCCGGTG-ATACATTTCAGACTATAT
1 GTCTAGCAGGCTTAATGCCGGTGAATA-A-TTCAGACTTTAA
* *
14263285 GTCTAGCAGGC-TAAGTGCCGGTGTACTGAA-TCAGGCTTTAA
1 GTCTAGCAGGCTTAA-TGCCGGTG-AAT-AATTCAGACTTTAA
* **
14263326 GCCTAGCAGGCAAAATGCCGGTGAAT
1 GTCTAGCAGGCTTAATGCCGGTGAAT
14263352 CTGTTTAAAT
Statistics
Matches: 250, Mismatches: 11, Indels: 23
0.88 0.04 0.08
Matches are distributed among these distances:
39 5 0.02
40 7 0.03
41 230 0.92
42 2 0.01
43 5 0.02
44 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (40 bp):
GTCTAGCAGGCTTAATGCCGGTGAATAATTCAGACTTTAA
Found at i:14263139 original size:82 final size:82
Alignment explanation
Indices: 14263039--14263349 Score: 477
Period size: 82 Copynumber: 3.8 Consensus size: 82
14263029 CGGACGTTAC
14263039 GTCTAGCAGGCTTAATGCCGGTGA-AGTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
1 GTCTAGCAGGCTTAATGCCGGTGATA-TAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
14263103 ATACATTTCAGACTTTAA
65 ATACATTTCAGACTTTAA
*
14263121 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGATATAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
*
14263186 TATATTTCAGACTTTAA
66 TACATTTCAGACTTTAA
*
14263203 GTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGATATAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
* *
14263268 TACATTTCAGACTATAT
66 TACATTTCAGACTTTAA
* * **
14263285 GTCTAGCAGGC-TAAGTGCCGGTG-TACTGAA-TCAGGCTTTAAGCCTAGCAGGCAAAATGCCGG
1 GTCTAGCAGGCTTAA-TGCCGGTGATA-T-AATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGG
14263347 TGA
63 TGA
14263350 ATCTGTTTAA
Statistics
Matches: 215, Mismatches: 10, Indels: 8
0.92 0.04 0.03
Matches are distributed among these distances:
81 5 0.02
82 208 0.97
83 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (82 bp):
GTCTAGCAGGCTTAATGCCGGTGATATAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
TACATTTCAGACTTTAA
Found at i:14263258 original size:123 final size:123
Alignment explanation
Indices: 14263039--14263349 Score: 468
Period size: 123 Copynumber: 2.5 Consensus size: 123
14263029 CGGACGTTAC
*
14263039 GTCTAGCAGGCTTAATGCCGGTGA-AGTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
1 GTCTAGCAGGCTTAATGCCGGTGATACT-ATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
* *
14263103 ATACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATATATTTCAGACTTTAA
65 ATACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAA
14263162 GTCTAGCAGGCTTAATGCCGGTGATA-TATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
1 GTCTAGCAGGCTTAATGCCGGTGATACTA-TTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTG
* *
14263226 ATATATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAT
65 ATACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAA
* * * **
14263285 GTCTAGCAGGC-TAAGTGCCGGTG-TACTGAATCAGGCTTTAAGCCTAGCAGGCAAAATGCCGGT
1 GTCTAGCAGGCTTAA-TGCCGGTGATACT-ATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGT
14263348 GA
64 GA
14263350 ATCTGTTTAA
Statistics
Matches: 174, Mismatches: 9, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
122 6 0.03
123 166 0.95
124 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.30
Consensus pattern (123 bp):
GTCTAGCAGGCTTAATGCCGGTGATACTATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
TACATTTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAA
Found at i:14266045 original size:26 final size:26
Alignment explanation
Indices: 14266014--14266121 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
14266004 TGAAATGCCC
*
14266014 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
14266040 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
14266066 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
14266092 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
14266118 ATCA
1 ATCA
14266122 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:14271531 original size:26 final size:26
Alignment explanation
Indices: 14271502--14271554 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
14271492 TCAAACATGC
14271502 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
14271528 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
14271554 A
1 A
14271555 AAATTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:14273068 original size:26 final size:26
Alignment explanation
Indices: 14273037--14273144 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
14273027 TGAAATGCCC
14273037 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAAACCATT
*
14273063 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAAACCATT
* *
14273089 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAAACCATT
14273115 ATCATGGAACATTTACCT-AACACATT
1 ATCATGGAACATTTACCTAAAC-CATT
14273141 ATCA
1 ATCA
14273145 ATTTGTACCA
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
25 2 0.03
26 74 0.97
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAAACCATT
Found at i:14275423 original size:13 final size:14
Alignment explanation
Indices: 14275407--14275435 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14275397 TTATAAATAT
14275407 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
14275420 TTATAATGGTTTAA
1 TTATAATGGTTTAA
14275434 TT
1 TT
14275436 CATGTTAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:14277041 original size:21 final size:21
Alignment explanation
Indices: 14277017--14277056 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
14277007 TTGACAATCA
14277017 AAGAATCAAACAAAAAAAAAC
1 AAGAATCAAACAAAAAAAAAC
14277038 AAGAATCAAACAAAAAAAA
1 AAGAATCAAACAAAAAAAA
14277057 TAGTTGGTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.78, C:0.12, G:0.05, T:0.05
Consensus pattern (21 bp):
AAGAATCAAACAAAAAAAAAC
Found at i:14279349 original size:15 final size:16
Alignment explanation
Indices: 14279324--14279353 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
14279314 AGCATTTAAA
14279324 AAAAAAGAGATCATTC
1 AAAAAAGAGATCATTC
14279340 AAAAAA-AGATCATT
1 AAAAAAGAGATCATT
14279354 TTTATTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.60, C:0.10, G:0.10, T:0.20
Consensus pattern (16 bp):
AAAAAAGAGATCATTC
Found at i:14279464 original size:64 final size:64
Alignment explanation
Indices: 14279387--14279594 Score: 344
Period size: 64 Copynumber: 3.2 Consensus size: 64
14279377 TTCATAACAC
14279387 GTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATCAGCATCACATCTA
1 GTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATCAGCATCACATCTA
* * * * *
14279451 ATTAGGAGTATTTGATTCATTTTGATCATAACATCCTAATTATTTGACATAAGCATCACATCTA
1 GTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATCAGCATCACATCTA
**
14279515 GTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATCAATATCACATCTA
1 GTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATCAGCATCACATCTA
*
14279579 GTTAGGAGTATTTGAT
1 GTTAGGAGCATTTGAT
14279595 CATAGCATCC
Statistics
Matches: 131, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 131 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (64 bp):
GTTAGGAGCATTTGATTCATTTCGATCATAGCATCCTAATTATTTGACATCAGCATCACATCTA
Found at i:14279996 original size:44 final size:46
Alignment explanation
Indices: 14279913--14280008 Score: 108
Period size: 44 Copynumber: 2.2 Consensus size: 46
14279903 AGCCACCAGC
* ** ** *
14279913 CTTATC-TCTCTGAAGTAGCAAGGGAGCAGGTTGGCGATTGTAG-T
1 CTTATCTTCTCTGAAGTAGCAAGGAAGCAGACTGAAGATTGAAGAT
*
14279957 CTTATCTTC-CTGAGGTAGCAAGGAAGCAGACTGAAGATTGAAGAT
1 CTTATCTTCTCTGAAGTAGCAAGGAAGCAGACTGAAGATTGAAGAT
14280002 CTTATCT
1 CTTATCT
14280009 CCATGTACCG
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
44 33 0.77
45 10 0.23
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (46 bp):
CTTATCTTCTCTGAAGTAGCAAGGAAGCAGACTGAAGATTGAAGAT
Found at i:14280055 original size:132 final size:133
Alignment explanation
Indices: 14279867--14280138 Score: 388
Period size: 132 Copynumber: 2.1 Consensus size: 133
14279857 AAGATGGCGA
*
14279867 ATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTAGC
1 ATCTTATCTCCATGTATCCGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTAGC
* ** * * * * *
14279932 AAGGGAGCAGGTTGGCGATTG-TAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
66 AAGAGAGCAGGTTGAAGA-TGATAGTCTTAACTTCCTGACGCAACAAGGAAGCAGACTAAAGATT
14279996 GAAG
130 GAAG
* * *
14280000 ATCTTATCTCCATGTA-CCGTAATGGAGCAGATTTTAGCCA-CTGACCTTATCTCTCTGAGGTAG
1 ATCTTATCTCCATGTATCCGCAATGGAGCAGATTTTAGCCACCAG-CCTTATCTCTCTGAAGTAG
14280063 CAAGAGAGCAGGTTGAAGATGATAGTCTTAACTTCCTGACGCAACAAGGAAGCAGACTAAAGATT
65 CAAGAGAGCAGGTTGAAGATGATAGTCTTAACTTCCTGACGCAACAAGGAAGCAGACTAAAGATT
14280128 GAAG
130 GAAG
*
14280132 GTCTTAT
1 ATCTTAT
14280139 TTCCCTAAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
131 4 0.03
132 104 0.84
133 16 0.13
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27
Consensus pattern (133 bp):
ATCTTATCTCCATGTATCCGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTAGC
AAGAGAGCAGGTTGAAGATGATAGTCTTAACTTCCTGACGCAACAAGGAAGCAGACTAAAGATTG
AAG
Found at i:14280296 original size:309 final size:311
Alignment explanation
Indices: 14279776--14280442 Score: 796
Period size: 309 Copynumber: 2.1 Consensus size: 311
14279766 CTCAATATAC
* * * * * *
14279776 AAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGATTGAAGGTTGAAGATCTTATCTCCCTAAGCA
1 AAGTCTTAACTTCCTAACGCAACAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCA
* * * * * * * *
14279841 GTAGTAGGGCAGATCGAAGATGGCGAATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGC
66 GTAGTAGGACAAACCAAAGACGACAAATCTTATCTCCATGTACCGGCAATGGAGCAGATTTTAGC
* * ** *
14279906 CACCAGCCTTATCTCTCTGAAGTAGCAAGGGAGCAGGTTGGCGATTGTAGTCTTATCTTCCTGAG
131 CACCAGCCTTATCTCCCTGAAGTAGCAAGGGAGCAGGCT-GCGATTCAAGTCTTATCTCCCTGAG
*
14279971 GTAGCAAGGAAGCAGACTGAAGATTGAA-G-ATCTTATCTCCATGTACCG-TAATGGAGCAGATT
195 GTAGCAAGGAAGCAGACTGAAGATTGAAGGAATCTTATCTCCATGTACCGACAATGGAGCAGATT
* * * *
14280033 TTAGCCAC-TGACCTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTGAAGA-TG
260 TAAGCCCCAAG-CCTTATCTCTCTGAGGTAACAAGAGAGCAGGTTGAAGATTG
* * * *
14280084 ATAGTCTTAACTTCCTGACGCAACAAGGAAGCAGACTAAAGATTGAAGGTCTTATTTCCCTAAGC
1 A-AGTCTTAACTTCCTAACGCAACAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGC
*
14280149 AGTAGT-GGAATAAACCAAAGACGACAAATCTTATCTCCATGTACCGGCAATGGAGCAGA-TTTA
65 AGTAGTAGG-ACAAACCAAAGACGACAAATCTTATCTCCATGTACCGGCAATGGAGCAGATTTTA
* * * *
14280212 GGTCACCAGCCTTATCTCCCTGAAGTTGC-AGTGGGGTAGGCT-CGATATACAAGTCTTATCTCC
129 -GCCACCAGCCTTATCTCCCTGAAGTAGCAAG-GGAGCAGGCTGCGAT-T-CAAGTCTTATCTCC
* * * *
14280275 CTGAGGTTGC-AGTGGAGCAGACTGAAGATTGAAGGCAAATCTTATCTTCATGTATCGACAATGG
190 CTGAGGTAGCAAG-GAAGCAGACTGAAGATTGAAGG--AATCTTATCTCCATGTACCGACAATGG
14280339 AGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGTAACAAGAGAGCAGGTTGAAGATTG
252 AGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGTAACAAGAGAGCAGGTTGAAGATTG
* * * *
14280399 AAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTG
1 AAGTCTTAACTTCCTAACGCAACAAGGAAGCAGACTGAAGATTG
14280443 GAGGAAAATC
Statistics
Matches: 302, Mismatches: 43, Indels: 22
0.82 0.12 0.06
Matches are distributed among these distances:
307 4 0.01
308 12 0.04
309 171 0.57
310 1 0.00
313 17 0.06
314 93 0.31
315 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (311 bp):
AAGTCTTAACTTCCTAACGCAACAAGGAAGCAGACTGAAGATTGAAGATCTTATCTCCCTAAGCA
GTAGTAGGACAAACCAAAGACGACAAATCTTATCTCCATGTACCGGCAATGGAGCAGATTTTAGC
CACCAGCCTTATCTCCCTGAAGTAGCAAGGGAGCAGGCTGCGATTCAAGTCTTATCTCCCTGAGG
TAGCAAGGAAGCAGACTGAAGATTGAAGGAATCTTATCTCCATGTACCGACAATGGAGCAGATTT
AAGCCCCAAGCCTTATCTCTCTGAGGTAACAAGAGAGCAGGTTGAAGATTG
Found at i:14280337 original size:137 final size:137
Alignment explanation
Indices: 14280173--14280581 Score: 400
Period size: 137 Copynumber: 3.0 Consensus size: 137
14280163 CCAAAGACGA
* * *
14280173 CAAATCTTATCTCCATGTACCGGCAATGGAGCAGATTTAGGTCACC-AGCCTTATCTCCCTGAAG
1 CAAATCTTATCTCCATGTATCGACAATGGAGCAGATTTAAG-CACCAAGCCTTATCTCCCTGAAG
** * * * * * * *
14280237 TTGC-AGTGGGGTAGGCTCG-ATATACAAGTCTTATCTCCCTGAGGTTGC-AGTGGAGCAGACTG
65 TAACAAG-AGAGCAGG-TCGAAGATACAAGTCTTATCTCCCTAAGGTAGCAAG-GAAGCAGACTG
14280299 AAGATTGAAGG
127 AAGATTGAAGG
* * * *
14280310 CAAATCTTATCTTCATGTATCGACAATGGAGCAGATTTAAGCCCCAAGCCTTATCTCTCTGAGGT
1 CAAATCTTATCTCCATGTATCGACAATGGAGCAGATTTAAGCACCAAGCCTTATCTCCCTGAAGT
* ** *
14280375 AACAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGA
66 AACAAGAGAGCAGGTCGAAGATACAAGTCTTATCTCCCTAAGGTAGCAAGGAAGCAGACTGAAGA
*
14280440 TTGGAGG
131 TTGAAGG
* * * *
14280447 AAAATCTTATCTCCATGTATCGGA-AATGGAGCAGATTTAAGC-CTGAAGCCTTATCTCTCTGAG
1 CAAATCTTATCTCCATGTATC-GACAATGGAGCAGATTTAAGCAC-CAAGCCTTATCTCCCTGAA
* ** ** ** * * *
14280510 GTAGCAAGAGAGCAGGTTAAAGAT-TGAGTCTTATCTTTCTGAGGTAGCAAGAAAGCAGACTAAA
64 GTAACAAGAGAGCAGGTCGAAGATACAAGTCTTATCTCCCTAAGGTAGCAAGGAAGCAGACTGAA
14280574 GATTGAAG
129 GATTGAAG
14280582 ATCTTATCTC
Statistics
Matches: 233, Mismatches: 33, Indels: 13
0.84 0.12 0.05
Matches are distributed among these distances:
136 47 0.20
137 180 0.77
138 6 0.03
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.26
Consensus pattern (137 bp):
CAAATCTTATCTCCATGTATCGACAATGGAGCAGATTTAAGCACCAAGCCTTATCTCCCTGAAGT
AACAAGAGAGCAGGTCGAAGATACAAGTCTTATCTCCCTAAGGTAGCAAGGAAGCAGACTGAAGA
TTGAAGG
Found at i:14280407 original size:44 final size:44
Alignment explanation
Indices: 14280359--14280591 Score: 158
Period size: 44 Copynumber: 5.2 Consensus size: 44
14280349 AGCCCCAAGC
* * *
14280359 CTTATCTCTCTGAGGTAACAAGAGAGCAGGTTGAAGATTGAAGT
1 CTTATCTCTCTGAGGTAGCAAGAGAGCAGATTAAAGATTGAAGT
* * * *
14280403 CTTATCT-TCCTAAGGTAGCAAG-GAAGCAGACTGAAGATTGGAGGAAAAT
1 CTTATCTCT-CTGAGGTAGCAAGAG-AGCAGATTAAAGATT----G-AAGT
* ** *
14280452 CTTATCTC-CATGTATCGG-A--AATG-GAGCAGATTTAAGCCTGAAGC
1 CTTATCTCTC-TG-A--GGTAGCAA-GAGAGCAGATTAAAGATTGAAGT
*
14280496 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTAAAGATTG-AGT
1 CTTATCTCTCTGAGGTAGCAAGAGAGCAGATTAAAGATTGAAGT
* * *
14280539 CTTATCTTTCTGAGGTAGCAAGAAAGCAGACTAAAGATTGAAGAT
1 CTTATCTCTCTGAGGTAGCAAGAGAGCAGATTAAAGATTGAAG-T
14280584 CTTATCTC
1 CTTATCTC
14280592 CCCTAAGCAA
Statistics
Matches: 147, Mismatches: 22, Indels: 39
0.71 0.11 0.19
Matches are distributed among these distances:
41 2 0.01
42 1 0.01
43 42 0.29
44 60 0.41
45 10 0.07
48 2 0.01
49 24 0.16
50 3 0.02
51 1 0.01
52 2 0.01
ACGTcount: A:0.33, C:0.16, G:0.24, T:0.27
Consensus pattern (44 bp):
CTTATCTCTCTGAGGTAGCAAGAGAGCAGATTAAAGATTGAAGT
Found at i:14280551 original size:43 final size:45
Alignment explanation
Indices: 14280496--14280591 Score: 142
Period size: 43 Copynumber: 2.2 Consensus size: 45
14280486 AGCCTGAAGC
* **
14280496 CTTATCTCTCTGAGGTAGCAAGAGAGCAGGTTAAAGATTG-AG-T
1 CTTATCTCTCTGAGGTAGCAAGAAAGCAGACTAAAGATTGAAGAT
*
14280539 CTTATCTTTCTGAGGTAGCAAGAAAGCAGACTAAAGATTGAAGAT
1 CTTATCTCTCTGAGGTAGCAAGAAAGCAGACTAAAGATTGAAGAT
14280584 CTTATCTC
1 CTTATCTC
14280592 CCCTAAGCAA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 36 0.78
44 2 0.04
45 8 0.17
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (45 bp):
CTTATCTCTCTGAGGTAGCAAGAAAGCAGACTAAAGATTGAAGAT
Found at i:14280656 original size:177 final size:176
Alignment explanation
Indices: 14280448--14280841 Score: 481
Period size: 177 Copynumber: 2.2 Consensus size: 176
14280438 GATTGGAGGA
* ** *
14280448 AAATCTTATCTCCATGTATCGGAAATGGAGCAGATTTAAGCCTGAAGCCTTATCTCTCTGAGGTA
1 AAATCTTATCTCCATGTAT-GGCAATGGAGCAGATTTAAGCCACAAGCCTTATCTCTCTGAAGTA
* *
14280513 GCAAGAGAGCAGGTTAAAGA-TTGAGTCTTATCTTTC-TGAGGTAGCAAGAAAGCAGACTAAAGA
65 GCAAGAGACCAGGTTAAAGATTTGAGTCTTATC-TTCATGAGGTACCAAGAAAGCAGACTAAAGA
* *
14280576 TTGAAGATCTTATCTCCCCT-AAGCAATAGTGGAGCAGATCGA-AGATGGC
129 TTGAAGATC-TAT-TCCCCTAAAGCAATAGCGGAGCAGATCGATA-ATAGC
* * * *
14280625 GAATCTTATCTCCATGTACTGGCAATGGAGCAGATTTTAGCCACTAGCCTTATCTCTTTGAAGTA
1 AAATCTTATCTCCATGTA-TGGCAATGGAGCAGATTTAAGCCACAAGCCTTATCTCTCTGAAGTA
*** * * * *
14280690 GCAAGAGACCAGGTTGGCGATTTTAGTCTTATCTTCATGAGGTACCAAGGAAGTAGACTGAAGAT
65 GCAAGAGACCAGGTTAAAGATTTGAGTCTTATCTTCATGAGGTACCAAGAAAGCAGACTAAAGAT
* * * *
14280755 TGAAGATCTATTTCCCTAAAGCAGTTGCGGAGCAGATTGATAATAGC
130 TGAAGATCTATTCCCCTAAAGCAATAGCGGAGCAGATCGATAATAGC
*
14280802 AAATCTTATCTCCATGTATTGGCAATGGAACAGATTTAAG
1 AAATCTTATCTCCATGTA-TGGCAATGGAGCAGATTTAAG
14280842 TCACTAGTCC
Statistics
Matches: 185, Mismatches: 27, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
176 5 0.03
177 135 0.73
178 45 0.24
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (176 bp):
AAATCTTATCTCCATGTATGGCAATGGAGCAGATTTAAGCCACAAGCCTTATCTCTCTGAAGTAG
CAAGAGACCAGGTTAAAGATTTGAGTCTTATCTTCATGAGGTACCAAGAAAGCAGACTAAAGATT
GAAGATCTATTCCCCTAAAGCAATAGCGGAGCAGATCGATAATAGC
Found at i:14280720 original size:451 final size:444
Alignment explanation
Indices: 14279866--14280759 Score: 1122
Period size: 451 Copynumber: 2.0 Consensus size: 444
14279856 GAAGATGGCG
* * *
14279866 AATCTTATCTCCATGTATCGGCAATGGAGCAGATTTTAGCCACCAGCCTTATCTCTCTGAAGTAG
1 AATCTTATCTCCATGTATCGACAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAAGTAA
* ** * *
14279931 CAAGGGAGCAGGTTGGCGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
66 CAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATT
* * *
14279996 GAAGATCTTATCTCCATGTACCGTAATGGAGCAGATTTTAGCCACTGACCTTATCTCTCTGAGGT
131 GAAAATCTTATCTCCATGTACCGAAATGGAGCAGATTTAAGCCACTGACCTTATCTCTCTGAGGT
* *
14280061 AGCAAGAGAGCAGGTTGAAGATGATAGTCTTAACTTCCTGACGCAACAAGGAAGCAGACTAAAGA
196 AGCAAGAGAGCAGGTTAAAGATGA-AGTCTTAACTTCCTGACGCAACAAGAAAGCAGACTAAAGA
* * * *
14280126 TTGAAGGTCTTATTTCCCTAAGCAGTAGTGGAATAAACCAAAGACGACAAATCTTATCTCCATGT
260 TTGAAGATCTTATTCCCCTAAGCAATAGTGGAACAAACCAAAGACGACAAATCTTATCTCCATGT
* * * *
14280191 ACCGGCAATGGAGCAGATTTAGGTCACCAGCCTTATCTCCCTGAAGTTGCAGTGGGGTAGGCTCG
325 ACCGGCAATGGAGCAGATTTAGGCCACCAGCCTTATCTCCCTGAAGTAGCAGAGAGGTAGGC-CG
* ** *
14280256 ATATACAAGTCTTATCTCCCTGAGGTTGC-AGTGGAGCAGACTGAAGATTGAAGGCA
389 ATATACAAGTCTTATCTCCATGAGGTACCAAG-GAAGCAGACTGAAGATTGAAGGCA
* *
14280312 AATCTTATCTTCATGTATCGACAATGGAGCAGATTTAAGCC-CCAAGCCTTATCTCTCTGAGGTA
1 AATCTTATCTCCATGTATCGACAATGGAGCAGATTTAAGCCACC-AGCCTTATCTCTCTGAAGTA
14280376 ACAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGAT
65 ACAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGAT
*
14280441 TGGAGGAAAATCTTATCTCCATGTATCGGAAATGGAGCAGATTTAAG-C-CTGAAGCCTTATCTC
130 T----GAAAATCTTATCTCCATGTA-CCGAAATGGAGCAGATTTAAGCCACTG-A-CCTTATCTC
* * * * *
14280504 TCTGAGGTAGCAAGAGAGCAGGTTAAAGATTG-AGTCTTATCTTTCTGAGGTAGCAAGAAAGCAG
188 TCTGAGGTAGCAAGAGAGCAGGTTAAAGA-TGAAGTCTTAACTTCCTGACGCAACAAGAAAGCAG
* * * * * * *
14280568 ACTAAAGATTGAAGATCTTATCTCCCCTAAGCAATAGTGGAGCAGATCGAAGATGGCGAATCTTA
252 ACTAAAGATTGAAGATCTTAT-TCCCCTAAGCAATAGTGGAACAAACCAAAGACGACAAATCTTA
* * **
14280633 TCTCCATGTACTGGCAATGGAGCAGATTTTA-GCCACTAGCCTTATCTCTTTGAAGTAGCAAGAG
316 TCTCCATGTACCGGCAATGGAGCAGA-TTTAGGCCACCAGCCTTATCTCCCTGAAGTAGC-AGAG
* ** * *
14280697 ACCAGGTTGG-CGAT-T-TTAGTCTTATCTTCATGAGGTACCAAGGAAGTAGACTGAAGATTGAA
379 ---AGGTAGGCCGATATACAAGTCTTATCTCCATGAGGTACCAAGGAAGCAGACTGAAGATTGAA
14280759 G
441 G
14280760 ATCTATTTCC
Statistics
Matches: 383, Mismatches: 49, Indels: 27
0.83 0.11 0.06
Matches are distributed among these distances:
445 2 0.01
446 117 0.31
449 3 0.01
450 67 0.17
451 173 0.45
452 12 0.03
453 4 0.01
455 5 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (444 bp):
AATCTTATCTCCATGTATCGACAATGGAGCAGATTTAAGCCACCAGCCTTATCTCTCTGAAGTAA
CAAGAGAGCAGGTTGAAGATTGAAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATT
GAAAATCTTATCTCCATGTACCGAAATGGAGCAGATTTAAGCCACTGACCTTATCTCTCTGAGGT
AGCAAGAGAGCAGGTTAAAGATGAAGTCTTAACTTCCTGACGCAACAAGAAAGCAGACTAAAGAT
TGAAGATCTTATTCCCCTAAGCAATAGTGGAACAAACCAAAGACGACAAATCTTATCTCCATGTA
CCGGCAATGGAGCAGATTTAGGCCACCAGCCTTATCTCCCTGAAGTAGCAGAGAGGTAGGCCGAT
ATACAAGTCTTATCTCCATGAGGTACCAAGGAAGCAGACTGAAGATTGAAGGCA
Found at i:14283397 original size:26 final size:24
Alignment explanation
Indices: 14283355--14283405 Score: 59
Period size: 26 Copynumber: 2.0 Consensus size: 24
14283345 AGTGTACGAG
14283355 TTTTTGAAAGTCAAAAGTCGATCGTA
1 TTTTTGAAAGTCAAAAG--GATCGTA
*
14283381 TTTTTGAAGGT-ATAAAGGATCGTA
1 TTTTTGAAAGTCA-AAAGGATCGTA
14283405 T
1 T
14283406 CTAATCGTGC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
24 8 0.35
25 1 0.04
26 14 0.61
ACGTcount: A:0.33, C:0.08, G:0.22, T:0.37
Consensus pattern (24 bp):
TTTTTGAAAGTCAAAAGGATCGTA
Found at i:14284684 original size:11 final size:12
Alignment explanation
Indices: 14284667--14284699 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
14284657 CAAAACTACC
14284667 CAAACCCAATTA
1 CAAACCCAATTA
14284679 -AAACCCAATTA
1 CAAACCCAATTA
14284690 CAAAGCCCAA
1 CAAA-CCCAA
14284700 AACAAATCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 11 0.58
12 3 0.16
13 5 0.26
ACGTcount: A:0.52, C:0.33, G:0.03, T:0.12
Consensus pattern (12 bp):
CAAACCCAATTA
Found at i:14286000 original size:24 final size:26
Alignment explanation
Indices: 14285973--14286023 Score: 70
Period size: 24 Copynumber: 2.0 Consensus size: 26
14285963 TATTTTAAAC
14285973 TATTATCCATTTT-AAAT-TTATATA
1 TATTATCCATTTTAAAATATTATATA
**
14285997 TATTATTTATTTTAAAATATTATATA
1 TATTATCCATTTTAAAATATTATATA
14286023 T
1 T
14286024 TATTTATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 11 0.48
25 4 0.17
26 8 0.35
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (26 bp):
TATTATCCATTTTAAAATATTATATA
Found at i:14286099 original size:26 final size:26
Alignment explanation
Indices: 14285981--14286244 Score: 143
Period size: 26 Copynumber: 10.0 Consensus size: 26
14285971 ACTATTATCC
*
14285981 ATTTTAAA-TT-TATATATATTATTT
1 ATTTTAAATTTCTTTATATATTATTT
* *
14286005 ATTTTAAA-AT-ATTATATATTATTT
1 ATTTTAAATTTCTTTATATATTATTT
*
14286029 ATTTTGAATTTCTTTTTTATATATCT-TTT
1 ATTTTAAATTTC---TTTATATAT-TATTT
* * *
14286058 ATTTTTAAACTGCTTTGTATATTATTT
1 A-TTTTAAATTTCTTTATATATTATTT
* *
14286085 ATTTTAAATTTCTTTTTACCTATTATAT
1 ATTTTAAATTTCTTTATA--TATTATTT
* * *
14286113 ATCTTAAA-CTCTTTCATATTTCATATGTT
1 ATTTTAAATTTCTTT-ATATAT--TAT-TT
* * **
14286142 GTTTAAAAGGATC-TTATATATTATTT
1 ATTTTAAA-TTTCTTTATATATTATTT
* *
14286168 ATTTGAAATTTCTTTGTATATTATTT
1 ATTTTAAATTTCTTTATATATTATTT
* * *
14286194 ATTGT-AATTTGTTTTACATATTATTT
1 ATTTTAAATTT-CTTTATATATTATTT
*
14286220 ATTTTAAA-TTGTTT-TATATTATTT
1 ATTTTAAATTTCTTTATATATTATTT
14286244 A
1 A
14286245 CTTCGAATTT
Statistics
Matches: 184, Mismatches: 37, Indels: 38
0.71 0.14 0.15
Matches are distributed among these distances:
24 38 0.21
25 11 0.06
26 58 0.32
27 22 0.12
28 19 0.10
29 23 0.12
30 11 0.06
31 2 0.01
ACGTcount: A:0.30, C:0.06, G:0.05, T:0.60
Consensus pattern (26 bp):
ATTTTAAATTTCTTTATATATTATTT
Found at i:14288012 original size:29 final size:29
Alignment explanation
Indices: 14287913--14288012 Score: 141
Period size: 28 Copynumber: 3.5 Consensus size: 29
14287903 GGTCAAAATC
* *
14287913 ATAAAATCTAAAAAAATAGAGGCAAAACT
1 ATAAAATCTGAAAAAATAGTGGCAAAACT
*
14287942 GTAAAATCTG-AAAAATAGTGGCAAAACT
1 ATAAAATCTGAAAAAATAGTGGCAAAACT
*
14287970 ATAAAATCT-AAAAAACAGTGGCAAAACT
1 ATAAAATCTGAAAAAATAGTGGCAAAACT
*
14287998 ATAAAATATGAAAAA
1 ATAAAATCTGAAAAA
14288013 CAGGGGACAC
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
28 50 0.79
29 13 0.21
ACGTcount: A:0.59, C:0.10, G:0.12, T:0.19
Consensus pattern (29 bp):
ATAAAATCTGAAAAAATAGTGGCAAAACT
Found at i:14293232 original size:30 final size:31
Alignment explanation
Indices: 14293178--14293238 Score: 81
Period size: 30 Copynumber: 2.0 Consensus size: 31
14293168 ATTGATCAAG
* *
14293178 TTCCATATACATGTATCATCCATTT-CATGT
1 TTCCATATACATGTAACATACATTTCCATGT
14293208 TTCCATATACCATGTAACA-ACATTTCCATGT
1 TTCCATATA-CATGTAACATACATTTCCATGT
14293239 AATTCATGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 14 0.52
31 13 0.48
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (31 bp):
TTCCATATACATGTAACATACATTTCCATGT
Found at i:14298033 original size:300 final size:300
Alignment explanation
Indices: 14297455--14298047 Score: 758
Period size: 300 Copynumber: 2.0 Consensus size: 300
14297445 AGGATCATTG
* * * * * *
14297455 AAATGGATAGACAAGAATTGAATTAGGCTTCATGATCAAGTGTTAGAGAATCCTTCTTAGAGGCC
1 AAATGGATAGACAAGAAATGAATTACGCTTCATGATAAAGTGTTAGAGAATCCTCCTTAAAGACC
* * *
14297520 CAAGTTAGAGCTCATTTCCTCCCATTTCCTTCTAATTATTTTTCGACAACCTAGGTTAAAAGCCA
66 CAAGTTAGAGCTCATTTCCTCCCATTTCCTTCTAATTATTTCTCGACAACCTAGGGTAAAAGCAA
* * * *
14297585 CACTTAAAATATATATAGTAAGGAATTAAAACTGAACAAGAATAGGCTTCAGGCCTAATAATTAA
131 CACCTAAAATATATACAATAAGGAATTAAAACTGAACAAGAATAGGCTTCAAGCCTAATAATTAA
* * * * * *
14297650 GAGTTAGCGTCCCTCCCTGGTGACCCTTGGTTTGAGCCACTCTTTCCCCAAAAGTATTCATTTCA
196 AAGTTAGCGTCCCTCCATGGTGACCCTCGGTTCGAGCCACTCCTTCCCCAAAAGCATTCATTTCA
* * *
14297715 TTTTCGACCAACTTTTGGGATATTTATCGTTGCCACCCTA
261 TTCTCGACCAAATTTTGGGATATTTACCGTTGCCACCCTA
* *
14297755 AAATGGATAGACAAGAAATGAATTACGCTTCATGGTAAAGTTTTAGAGAATCCTCCTTAAAGACC
1 AAATGGATAGACAAGAAATGAATTACGCTTCATGATAAAGTGTTAGAGAATCCTCCTTAAAGACC
* * * * *
14297820 TAAGTTCGAGCTCCTTTCCTCCCATTTCCTTTCT-TTTA-TTCTCGACAACCTAGGGTAAAAGTA
66 CAAGTTAGAGCTCATTTCCTCCCATTTCC-TTCTAATTATTTCTCGACAACCTAGGGTAAAAGCA
* * * * **
14297883 ACACCTAAAATATATACAATCAGGAATTAAAATTGAATAAGAAATAGGCTTTAAGCCTAATGGTT
130 ACACCTAAAATATATACAATAAGGAATTAAAACTGAACAAG-AATAGGCTTCAAGCCTAATAATT
* * * * * *
14297948 AAAATTTAGCTTCCCTCCATTGTGACCCTCGGTTCGAGTCACTCCTTCCTCAAAAGCATTCCTTT
194 AAAAGTTAGCGTCCCTCCATGGTGACCCTCGGTTCGAGCCACTCCTTCCCCAAAAGCATTCATTT
* **
14298013 TATTCTCGGTCAAATTTTGGGATATTTACCGTTGC
259 CATTCTCGACCAAATTTTGGGATATTTACCGTTGC
14298048 TGCCCTAGGG
Statistics
Matches: 247, Mismatches: 44, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
299 56 0.23
300 187 0.76
301 4 0.02
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (300 bp):
AAATGGATAGACAAGAAATGAATTACGCTTCATGATAAAGTGTTAGAGAATCCTCCTTAAAGACC
CAAGTTAGAGCTCATTTCCTCCCATTTCCTTCTAATTATTTCTCGACAACCTAGGGTAAAAGCAA
CACCTAAAATATATACAATAAGGAATTAAAACTGAACAAGAATAGGCTTCAAGCCTAATAATTAA
AAGTTAGCGTCCCTCCATGGTGACCCTCGGTTCGAGCCACTCCTTCCCCAAAAGCATTCATTTCA
TTCTCGACCAAATTTTGGGATATTTACCGTTGCCACCCTA
Found at i:14303564 original size:18 final size:19
Alignment explanation
Indices: 14303527--14303566 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
14303517 ATTTACATTT
* *
14303527 TTATTTGTTATTGTTTATA
1 TTATTTGTTAATGTTAATA
14303546 TTATTTG-TAATGTTAATA
1 TTATTTGTTAATGTTAATA
14303564 TTA
1 TTA
14303567 ATGGTATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (19 bp):
TTATTTGTTAATGTTAATA
Found at i:14304759 original size:26 final size:26
Alignment explanation
Indices: 14304725--14304782 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
14304715 CATCATTTTA
*
14304725 TTTTGTGTTATGATCATGTATATTAT
1 TTTTATGTTATGATCATGTATATTAT
14304751 TTTTATGTTATGATCATGTATATTAT
1 TTTTATGTTATGATCATGTATATTAT
14304777 TTTTAT
1 TTTTAT
14304783 ATACTAATTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.24, C:0.03, G:0.12, T:0.60
Consensus pattern (26 bp):
TTTTATGTTATGATCATGTATATTAT
Found at i:14306391 original size:50 final size:52
Alignment explanation
Indices: 14306296--14306396 Score: 125
Period size: 50 Copynumber: 2.0 Consensus size: 52
14306286 AGGATAATAC
*
14306296 AATAATATAATAGTAATAATAACAATATAAAAATAGCAATGATAGTAATAAAA
1 AATAATATAATAG-AATAATAACAATATAAAAATAGCAATAATAGTAATAAAA
* * ***
14306349 AATAATATATTA-AATAATAGCAA-ATAAAAATAGTGCTAATAGTAATAA
1 AATAATATAATAGAATAATAACAATATAAAAATAGCAATAATAGTAATAA
14306397 TAGTGATAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
50 21 0.50
51 10 0.24
53 11 0.26
ACGTcount: A:0.60, C:0.04, G:0.08, T:0.28
Consensus pattern (52 bp):
AATAATATAATAGAATAATAACAATATAAAAATAGCAATAATAGTAATAAAA
Found at i:14306400 original size:18 final size:18
Alignment explanation
Indices: 14306371--14306413 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
14306361 AATAATAGCA
* *
14306371 AATAAAAATAGTGCTAAT
1 AATAATAATAGTGATAAT
*
14306389 AGTAATAATAGTGATAAT
1 AATAATAATAGTGATAAT
14306407 AATAATA
1 AATAATA
14306414 GTATGAAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.56, C:0.02, G:0.12, T:0.30
Consensus pattern (18 bp):
AATAATAATAGTGATAAT
Found at i:14306466 original size:26 final size:25
Alignment explanation
Indices: 14306437--14306495 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 25
14306427 AACAATAGTA
14306437 AAATAAT-GATATTAATACCTAAATAT
1 AAATAATAGATA-TAATACCTAAA-AT
*
14306463 AAAT-ATAGATATAATATCTAAAAT
1 AAATAATAGATATAATACCTAAAAT
14306487 ATAATAATA
1 A-AATAATA
14306496 ATGAAAATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
24 3 0.10
25 15 0.52
26 11 0.38
ACGTcount: A:0.58, C:0.05, G:0.03, T:0.34
Consensus pattern (25 bp):
AAATAATAGATATAATACCTAAAAT
Found at i:14306525 original size:17 final size:18
Alignment explanation
Indices: 14306482--14306527 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
14306472 TATAATATCT
14306482 AAAATAT-AATAATAATG
1 AAAATATAAATAATAATG
14306499 AAAATATAAATACATAA-G
1 AAAATATAAATA-ATAATG
14306517 -AAATATAAATA
1 AAAATATAAATA
14306528 GATGAGTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 18 0.67
18 5 0.19
19 4 0.15
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.26
Consensus pattern (18 bp):
AAAATATAAATAATAATG
Found at i:14307075 original size:3 final size:3
Alignment explanation
Indices: 14307069--14307097 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
14307059 AAAAGAAGAT
14307069 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
14307098 GTGAGTAGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:14309095 original size:19 final size:19
Alignment explanation
Indices: 14309056--14309095 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
14309046 AAATACTCTT
*
14309056 AACTATTTATACAAATGTA
1 AACTATTTATACAAATATA
* *
14309075 AACTATTTATATATATATA
1 AACTATTTATACAAATATA
14309094 AA
1 AA
14309096 TCTTCAAGTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.50, C:0.07, G:0.03, T:0.40
Consensus pattern (19 bp):
AACTATTTATACAAATATA
Found at i:14313661 original size:15 final size:15
Alignment explanation
Indices: 14313641--14313674 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
14313631 TACCAAAAAG
14313641 GTATTTACAACAATT
1 GTATTTACAACAATT
**
14313656 GTATTTACGCCAATT
1 GTATTTACAACAATT
14313671 GTAT
1 GTAT
14313675 ATTCAAATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.41
Consensus pattern (15 bp):
GTATTTACAACAATT
Found at i:14319121 original size:19 final size:19
Alignment explanation
Indices: 14319097--14319194 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
14319087 AATCTTTAAG
14319097 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14319116 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
14319135 GATA--AAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14319152 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14319171 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
14319192 GAT
1 GAT
14319195 CTTGTAATCT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
21 9 0.12
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14319127 original size:36 final size:35
Alignment explanation
Indices: 14319087--14319194 Score: 103
Period size: 36 Copynumber: 2.9 Consensus size: 35
14319077 ATGGAAATAT
14319087 AATCTTTAAGGATATGCAATCTTAGATATGATATGC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATGC
*
14319123 AATC-TT-AGATATGATAAAATCTTAGATATGATATGC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATGC
*
14319159 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT---TAAGATATGCAATCTT--AGATATGAT
14319195 CTTGTAATCT
Statistics
Matches: 59, Mismatches: 3, Indels: 16
0.76 0.04 0.21
Matches are distributed among these distances:
33 6 0.10
34 1 0.02
35 2 0.03
36 27 0.46
37 1 0.02
38 6 0.10
40 10 0.17
41 6 0.10
ACGTcount: A:0.39, C:0.09, G:0.16, T:0.36
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATGC
Found at i:14324811 original size:7 final size:7
Alignment explanation
Indices: 14324795--14324868 Score: 53
Period size: 7 Copynumber: 9.7 Consensus size: 7
14324785 CTTCTATTTC
14324795 AAAAAA-
1 AAAAAAG
14324801 AAAAGAA-
1 AAAA-AAG
14324808 AAAAACAG
1 AAAAA-AG
14324816 AAAAAAAG
1 -AAAAAAG
*
14324824 AAAAAGACA
1 AAAAA-A-G
14324833 ATAAAAAG
1 A-AAAAAG
14324841 AAAAAAG
1 AAAAAAG
14324848 AGAAAAATG
1 A-AAAAA-G
14324857 AAAAAAG
1 AAAAAAG
14324864 AAAAA
1 AAAAA
14324869 TGGAGTGGCC
Statistics
Matches: 57, Mismatches: 2, Indels: 17
0.75 0.03 0.22
Matches are distributed among these distances:
6 5 0.09
7 25 0.44
8 14 0.25
9 9 0.16
10 4 0.07
ACGTcount: A:0.82, C:0.03, G:0.12, T:0.03
Consensus pattern (7 bp):
AAAAAAG
Found at i:14324847 original size:18 final size:19
Alignment explanation
Indices: 14324798--14324864 Score: 74
Period size: 18 Copynumber: 3.8 Consensus size: 19
14324788 CTATTTCAAA
14324798 AAAAAAAGAAAAAA-ACAG
1 AAAAAAAGAAAAAAGACAG
14324816 AAAAAAAG-AAAAAGACA-
1 AAAAAAAGAAAAAAGACAG
*
14324833 ATAAAAAGAAAAAAG--AG
1 AAAAAAAGAAAAAAGACAG
*
14324850 -AAAAATGAAAAAAGA
1 AAAAAAAGAAAAAAGA
14324865 AAAATGGAGT
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
16 13 0.31
17 12 0.29
18 17 0.40
ACGTcount: A:0.81, C:0.03, G:0.13, T:0.03
Consensus pattern (19 bp):
AAAAAAAGAAAAAAGACAG
Found at i:14324862 original size:9 final size:8
Alignment explanation
Indices: 14324798--14324868 Score: 65
Period size: 9 Copynumber: 8.6 Consensus size: 8
14324788 CTATTTCAAA
14324798 AAAAAAAG
1 AAAAAAAG
14324806 AAAAAAACAG
1 -AAAAAA-AG
14324816 AAAAAAAG
1 AAAAAAAG
* *
14324824 AAAAAGAC
1 AAAAAAAG
14324832 AATAAAAAG
1 AA-AAAAAG
14324841 -AAAAAAG
1 AAAAAAAG
*
14324848 AGAAAAATG
1 A-AAAAAAG
14324857 -AAAAAAG
1 AAAAAAAG
14324864 AAAAA
1 AAAAA
14324869 TGGAGTGGCC
Statistics
Matches: 51, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
7 12 0.24
8 15 0.29
9 22 0.43
10 2 0.04
ACGTcount: A:0.82, C:0.03, G:0.13, T:0.03
Consensus pattern (8 bp):
AAAAAAAG
Found at i:14325863 original size:44 final size:44
Alignment explanation
Indices: 14325722--14326027 Score: 253
Period size: 44 Copynumber: 7.0 Consensus size: 44
14325712 CAAAGAAATA
*
14325722 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
* * * * * * * **
14325766 AGATCTGACATTCCTATGCTTACAGTGAA-ACAGATCGAAGATTTC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACA-AG-TCGAAGATAGC
* *
14325811 AGCA--TGGCATCCCTGTGTTTATAGTGAACAAGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
*
14325854 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
* ** * * * * * * **
14325898 AGATCTAACATTCCTGTGCTTACAGCGAAGATGATCGAAGATTTC
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAG-TCGAAGATAGC
*
14325943 AGCA--TGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATAGC
1 AG-ATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
* * * * * *
14325986 AGATTTAGCATCCTTGTGCTTACAAGGAACAAATCGAAGATA
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATA
14326028 TAGCTGATTT
Statistics
Matches: 201, Mismatches: 51, Indels: 20
0.74 0.19 0.07
Matches are distributed among these distances:
42 2 0.01
43 21 0.10
44 153 0.76
45 23 0.11
46 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.27
Consensus pattern (44 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAAGTCGAAGATAGC
Found at i:14325959 original size:132 final size:132
Alignment explanation
Indices: 14325722--14326027 Score: 506
Period size: 132 Copynumber: 2.3 Consensus size: 132
14325712 CAAAGAAATA
*
14325722 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTGACATTCCTATGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTAACATTCCTATGCTT
* *
14325787 ACAGTGAAACAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGTGAACAAGTTGAAGATA
66 ACAGCGAAACAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
14325852 GC
131 GC
*
14325854 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTAACATTCCTGTGCTT
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTAACATTCCTATGCTT
*
14325919 ACAGCGAAGA-TGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
66 ACAGCGAA-ACAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGAT
14325983 AGC
130 AGC
* * * * *
14325986 AGATTTAGCATCCTTGTGCTTACAAGGAACAAATCGAAGATA
1 AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATA
14326028 TAGCTGATTT
Statistics
Matches: 163, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
132 162 0.99
133 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.27
Consensus pattern (132 bp):
AGATTTGGCATCCCTGTGTTTATAGGGAACAAATCGAAGATAGCAGATCTAACATTCCTATGCTT
ACAGCGAAACAGATCGAAGATTTCAGCATGGCATCCCTGTGTTTATAGGGAACAAGTTGAAGATA
GC
Found at i:14326760 original size:206 final size:206
Alignment explanation
Indices: 14325987--14326918 Score: 1469
Period size: 206 Copynumber: 4.5 Consensus size: 206
14325977 GAAGATAGCA
* * *
14325987 GATTTAGCATCCTTGTGCTTACAAGGAACAAATCGAAGATATAGCTGATTTGGCTTTCACG-GTT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
* *
14326051 TAC-ACTGAAGAAAATCTAAGATGATTAGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTG
66 TACGA-TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTG
* * ** *
14326115 GCGTCTCCATATTCAACAGAGAGCAGACACATAGTAGATCTGGCCTTCATATGTTTATACTGAAG
130 GCGTCTCCATATTCAACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAG
*
14326180 CAGATCCAAGGT
195 CAGATCCAAGAT
*
14326192 GATTTGGCATCCTTGTGCTTACAAGGAACAAATGGAAGAC--AGCTGATTTGGCTTTCACGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
* * *
14326255 TATGATGAAGCAAATCTAAGATGATTTGGCATTTCTGTATTGTCAGAGAACAAATTGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
* * *
14326320 TGTCTCCATATTCGACGGAGAGCAGACACATAGAAGATCTAACCTTCAGATGTTTATACTGAAGC
131 CGTCTCCATATTCAACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
14326385 AGATCCAAGAT
196 AGATCCAAGAT
* *
14326396 GATTTGGCATTCTTGTGCTTACAAGGAACAAATCAAAGACATAG-TGATTTGGCTTTCACGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
* * *
14326460 TACGATAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAGAGAACAAATTGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
* *
14326525 CGTCTCCATATTCAACGGACAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGT
131 CGTCTCCATATTCAACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
14326590 AGATCCAAGAT
196 AGATCCAAGAT
* *
14326601 GATTTGGCATTCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACCTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
*
14326666 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGTAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
* * * * *
14326731 CGTCTCCATATTCGACGGAGGGTAGACACATAGCAGATCTAACCTTCAGATGATTAGACTGAAGC
131 CGTCTCCATATTCAACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
14326796 AGATCCAAGAT
196 AGATCCAAGAT
* * * * * *
14326807 GGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGTTGATTTGGTTTTCGCGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
14326872 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
14326919 AAATAGATCG
Statistics
Matches: 672, Mismatches: 50, Indels: 9
0.92 0.07 0.01
Matches are distributed among these distances:
203 19 0.03
204 165 0.25
205 233 0.35
206 255 0.38
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (206 bp):
GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
CGTCTCCATATTCAACGGAGAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
AGATCCAAGAT
Found at i:14326848 original size:411 final size:410
Alignment explanation
Indices: 14325987--14326918 Score: 1483
Period size: 409 Copynumber: 2.3 Consensus size: 410
14325977 GAAGATAGCA
* * *
14325987 GATTTAGCATCCTTGTGCTTACAAGGAACAAATCGAAGATATAGCTGATTTGGCTTTCACG-GTT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
* *
14326051 TAC-ACTGAAGAAAATCTAAGATGATTAGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTG
66 TACGA-TGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTG
* * ** *
14326115 GCGTCTCCATATTCAACAGAGAGCAGACACATAGTAGATCTGGCCTTCATATGTTTATACTGAAG
130 GCGTCTCCATATTCAACAGACAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAG
* *
14326180 CAGATCCAAGGTGATTTGGCATCCTTGTGCTTACAAGGAACAAATGGAAGACAGCTGATTTGGCT
195 CAGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACAGCTGATTTGGCT
* * *
14326245 TTCACGTGCTTATGATGAAGCAAATCTAAGATGATTTGGCATTTCTGTATTGTCAGAGAACAAAT
260 TTCACCTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAAT
* * *
14326310 TGAAGTTTGGTGTCTCCATATTCGACGGAGAGCAGACACATAGAAGATCTAACCTTCAGATGTTT
325 CGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGAAGATCTAACCTTCAGATGATT
*
14326375 ATACTGAAGCAGATCCAAGAT
390 AGACTGAAGCAGATCCAAGAT
* *
14326396 GATTTGGCATTCTTGTGCTTACAAGGAACAAATCAAAGACATAG-TGATTTGGCTTTCACGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
* * *
14326460 TACGATAAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTTAGAGAACAAATTGAAGTTTGG
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
* *
14326525 CGTCTCCATATTCAACGGACAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGT
131 CGTCTCCATATTCAACAGACAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
*
14326590 AGATCCAAGATGATTTGGCATTCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGC
196 AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGAC--AGCTGATTTGGC
14326655 TTTCACCTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
259 TTTCACCTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAA
* * * *
14326720 TCGTAGTTTGGCGTCTCCATATTCGACGGAGGGTAGACACATAGCAGATCTAACCTTCAGATGAT
324 TCGAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGAAGATCTAACCTTCAGATGAT
14326785 TAGACTGAAGCAGATCCAAGAT
389 TAGACTGAAGCAGATCCAAGAT
* * * * * *
14326807 GGTTTGGTATCCTTGTGCTTACAAGGAGCAAATCGAAGACATAGTTGATTTGGTTTTCGCGTGCT
1 GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
14326872 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
66 TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGA
14326919 AAATAGATCG
Statistics
Matches: 478, Mismatches: 40, Indels: 7
0.91 0.08 0.01
Matches are distributed among these distances:
408 16 0.03
409 206 0.43
410 1 0.00
411 192 0.40
412 63 0.13
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (410 bp):
GATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCTGATTTGGCTTTCACGTGCT
TACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATCGAAGTTTGG
CGTCTCCATATTCAACAGACAGCAGACACATAGCAGATCTAACCTTCAGATGTTTATACTGAAGC
AGATCCAAGATGATTTGGCATCCTTGTGCTTACAAGGAACAAATCGAAGACAGCTGATTTGGCTT
TCACCTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAGAGAACAAATC
GAAGTTTGGCGTCTCCATATTCGACGGAGAGCAGACACATAGAAGATCTAACCTTCAGATGATTA
GACTGAAGCAGATCCAAGAT
Found at i:14327340 original size:19 final size:19
Alignment explanation
Indices: 14327312--14327409 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
14327302 AATCTTTAAG
14327312 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
14327331 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14327350 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14327367 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
14327386 GATATGCAATCTTGAAGATAT
1 GATATGCAATCTT--AGATAT
14327407 GAT
1 GAT
14327410 CTTGTAATCT
Statistics
Matches: 74, Mismatches: 1, Indels: 6
0.91 0.01 0.07
Matches are distributed among these distances:
17 17 0.23
19 48 0.65
21 9 0.12
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:14327342 original size:36 final size:35
Alignment explanation
Indices: 14327302--14327409 Score: 103
Period size: 36 Copynumber: 2.9 Consensus size: 35
14327292 ATGGAAATAT
14327302 AATCTTTAAGGATATGCAATCTTAGATATGATATAC
1 AATCTTTAA-GATATGCAATCTTAGATATGATATAC
*
14327338 AATC-TT-AGATATGATACAATCTTAGATATGATATGC
1 AATCTTTAAGATATG---CAATCTTAGATATGATATAC
*
14327374 AATCTTAGATATGATATGCAATCTTGAAGATATGAT
1 AATCTT---TAAGATATGCAATCTT--AGATATGAT
14327410 CTTGTAATCT
Statistics
Matches: 60, Mismatches: 2, Indels: 16
0.77 0.03 0.21
Matches are distributed among these distances:
33 6 0.10
34 1 0.02
35 2 0.03
36 27 0.45
37 1 0.02
38 7 0.12
40 10 0.17
41 6 0.10
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (35 bp):
AATCTTTAAGATATGCAATCTTAGATATGATATAC
Found at i:14336661 original size:17 final size:16
Alignment explanation
Indices: 14336620--14336664 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 16
14336610 TTTCCCAAAT
*
14336620 GCACACGGCCGTGT-C
1 GCACACGCCCGTGTGC
14336635 G-ACA-GCCCGTGTGC
1 GCACACGCCCGTGTGC
14336649 GGCACACGCCCGTGTG
1 -GCACACGCCCGTGTG
14336665 GCCACTAGAG
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
13 7 0.28
14 4 0.16
15 2 0.08
16 3 0.12
17 9 0.36
ACGTcount: A:0.13, C:0.38, G:0.36, T:0.13
Consensus pattern (16 bp):
GCACACGCCCGTGTGC
Found at i:14345397 original size:28 final size:28
Alignment explanation
Indices: 14345356--14345410 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
14345346 AAACATTCCA
* * *
14345356 CTTAAGATATTCCTTGGCAGATTTCCCT
1 CTTAAGAGAGTCCTTGGCAGACTTCCCT
14345384 CTTAAGAGAGTCCTTGGCAGACTTCCC
1 CTTAAGAGAGTCCTTGGCAGACTTCCC
14345411 CTATTTTCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.22, C:0.27, G:0.18, T:0.33
Consensus pattern (28 bp):
CTTAAGAGAGTCCTTGGCAGACTTCCCT
Found at i:14347590 original size:16 final size:16
Alignment explanation
Indices: 14347552--14347590 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
14347542 ATTTGGTTCA
*
14347552 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
* *
14347568 CTATAATTGAATAGAG
1 CTGTAATGGAATAGAG
14347584 CTGTAAT
1 CTGTAAT
14347591 AAGTAATTCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.31
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:14347661 original size:44 final size:46
Alignment explanation
Indices: 14347576--14347665 Score: 130
Period size: 44 Copynumber: 2.0 Consensus size: 46
14347566 GGCTATAATT
*
14347576 GAATAGAGCTGTAATAAGTAATTCAACTGTTTGGTTGAATGGAATG
1 GAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATGGAATG
***
14347622 GAATAGAACTGTAAT-AGT-ATTCTTGTGTTTGGTTGAATGGAATG
1 GAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATGGAATG
14347666 ATGCTGTAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 23 0.57
45 3 0.08
46 14 0.35
ACGTcount: A:0.32, C:0.06, G:0.27, T:0.36
Consensus pattern (46 bp):
GAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATGGAATG
Found at i:14347856 original size:16 final size:16
Alignment explanation
Indices: 14347837--14347868 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14347827 AATTATTATT
14347837 AAATATAACTTAATAA
1 AAATATAACTTAATAA
*
14347853 AAATATAATTTAATAA
1 AAATATAACTTAATAA
14347869 CATTCTTGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (16 bp):
AAATATAACTTAATAA
Found at i:14349903 original size:9 final size:9
Alignment explanation
Indices: 14349889--14349916 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
14349879 ATATCATTTT
14349889 TTTTGTTTC
1 TTTTGTTTC
14349898 TTTTGTTTC
1 TTTTGTTTC
14349907 TTTTGTTTC
1 TTTTGTTTC
14349916 T
1 T
14349917 ATTATTATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.00, C:0.11, G:0.11, T:0.79
Consensus pattern (9 bp):
TTTTGTTTC
Found at i:14361919 original size:43 final size:44
Alignment explanation
Indices: 14361858--14361950 Score: 127
Period size: 43 Copynumber: 2.1 Consensus size: 44
14361848 AATTCACCAA
* *
14361858 ACCTTGAACCCCTAAGCAGTAGGGTAACAGG-TTAAATTTACAG
1 ACCTTGAACCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAG
*
14361901 ACCTT-AACCCCCTAAGCAGTAGGGTAATAGGCTGAAAATTACAG
1 ACCTTGAA-CCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAG
*
14361945 ATCTTG
1 ACCTTG
14361951 TCTCCCTGAA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
42 2 0.05
43 27 0.63
44 14 0.33
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (44 bp):
ACCTTGAACCCCTAAGCAGTAGGGTAACAGGCTGAAAATTACAG
Found at i:14362555 original size:87 final size:87
Alignment explanation
Indices: 14362381--14362597 Score: 217
Period size: 87 Copynumber: 2.5 Consensus size: 87
14362371 CGCGATAGGT
* * * ** * * *
14362381 CTTAAACCCCTAAGCAGTAGGGTAACAGACAGAATTGCAGATCTTATCTCCCTCAGTAGCAGGGA
1 CTTAAACCCCTAAGAAGTAGGGTAACAGGCTGAATTATAGATCTTACCTCCCTAAGCAGCAGGGA
*
14362446 AACAGATCGAAGGTAAAAGAGC
66 AACAGATCGAAAGTAAAAGAGC
* *
14362468 CTTAAACCCCTAAGTAGTAGGGTAACAGGCTGAATTTATAGATCTTACCTCCCTAAGCAGTAGTG
1 CTTAAACCCCTAAGAAGTAGGGTAACAGGCTGAA-TTATAGATCTTACCTCCCTAAGCAGCAG-G
* * *
14362533 G-AGCAGATC-AAAG-ACGATGAGC
64 GAAACAGATCGAAAGTA-AAAGAGC
* *
14362555 CTT-GACCCCTAAGAAGCAGGGTAACAGGCTGAAAATTATAGAT
1 CTTAAACCCCTAAGAAGTAGGGTAACAGGCTG--AATTATAGAT
14362598 TCTATCTTCC
Statistics
Matches: 109, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
86 26 0.24
87 50 0.46
88 31 0.28
89 2 0.02
ACGTcount: A:0.35, C:0.21, G:0.23, T:0.21
Consensus pattern (87 bp):
CTTAAACCCCTAAGAAGTAGGGTAACAGGCTGAATTATAGATCTTACCTCCCTAAGCAGCAGGGA
AACAGATCGAAAGTAAAAGAGC
Found at i:14364550 original size:9 final size:9
Alignment explanation
Indices: 14364536--14364563 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
14364526 ATCATATTTT
14364536 TTTTGTTTC
1 TTTTGTTTC
14364545 TTTTGTTTC
1 TTTTGTTTC
14364554 TTTTGTTTC
1 TTTTGTTTC
14364563 T
1 T
14364564 ATTATTATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.00, C:0.11, G:0.11, T:0.79
Consensus pattern (9 bp):
TTTTGTTTC
Found at i:14368195 original size:21 final size:20
Alignment explanation
Indices: 14368148--14368195 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 20
14368138 GGACATGTTA
14368148 TTTTTTGTTTTGTTTCTTCT
1 TTTTTTGTTTTGTTTCTTCT
14368168 TGGTTTTTGTTCTTGTGTTCTTCT
1 T--TTTTTGTT-TTGT-TTCTTCT
14368192 TTTT
1 TTTT
14368196 GCTTTTTGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
20 1 0.04
22 11 0.46
23 4 0.17
24 8 0.33
ACGTcount: A:0.00, C:0.10, G:0.15, T:0.75
Consensus pattern (20 bp):
TTTTTTGTTTTGTTTCTTCT
Found at i:14370860 original size:30 final size:31
Alignment explanation
Indices: 14370780--14370862 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
14370770 TTAGTATCGA
14370780 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
14370810 CATATCACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
14370841 CATATCACT-GGCTGAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
14370863 ACTGTAAACG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
30 17 0.33
31 34 0.67
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:14371110 original size:25 final size:25
Alignment explanation
Indices: 14371082--14371151 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
14371072 CTCTTTTAAT
*
14371082 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
14371107 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
14371132 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
14371152 AGCACTTCCT
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:14372108 original size:27 final size:27
Alignment explanation
Indices: 14372055--14372297 Score: 131
Period size: 27 Copynumber: 9.0 Consensus size: 27
14372045 TTTCATCCTA
* * * **
14372055 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
**
14372082 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
* ** * *
14372109 TAATAGTATTTCT-ATAATTTT-TAGAAAGT
1 CAAGGGTATTT-TGGTAATTTTGT--AAA-C
* *
14372138 CAAGGGCATTTCT-GTAATTTTGT-AAT
1 CAAGGGTATTT-TGGTAATTTTGTAAAC
** *
14372164 C-AGGTGTATTTTGGTAATTTTACAAAT
1 CAAGG-GTATTTTGGTAATTTTGTAAAC
** ***
14372191 TGAGGGTATTTTGGTAATTTCACAAAC
1 CAAGGGTATTTTGGTAATTTTGTAAAC
**
14372218 C-AGTGGTATTTTGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTGTAAAC
*
14372244 CTAGAGGTATTTTGGTAATTTTGTAAAC
1 CAAG-GGTATTTTGGTAATTTTGTAAAC
*
14372272 CAAGGGTATTTTAGTAATTTTGTAAA
1 CAAGGGTATTTTGGTAATTTTGTAAA
14372298 TCGAAGGTAA
Statistics
Matches: 173, Mismatches: 31, Indels: 24
0.76 0.14 0.11
Matches are distributed among these distances:
25 4 0.02
26 19 0.11
27 124 0.72
28 9 0.05
29 16 0.09
30 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTGTAAAC
Found at i:14372315 original size:27 final size:27
Alignment explanation
Indices: 14372285--14372441 Score: 197
Period size: 27 Copynumber: 5.8 Consensus size: 27
14372275 GGGTATTTTA
* * *
14372285 GTAATTTTGTAAATCGAAGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
14372312 GTAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* * *
14372339 ATAATTCTATAAATTGAGGGTAAAATG
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
14372366 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTCTATAAATCGAGGGTAAAACG
* *
14372393 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTCTATAAATCGAGGGTAAAACG
14372420 GTAATTCTATAAATCGAGGGTA
1 GTAATTCTATAAATCGAGGGTA
14372442 CTTTGGTAAT
Statistics
Matches: 115, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 115 1.00
ACGTcount: A:0.40, C:0.06, G:0.22, T:0.31
Consensus pattern (27 bp):
GTAATTCTATAAATCGAGGGTAAAACG
Found at i:14372344 original size:81 final size:81
Alignment explanation
Indices: 14372274--14372460 Score: 248
Period size: 81 Copynumber: 2.3 Consensus size: 81
14372264 TTGTAAACCA
* * * * * *
14372274 AGGGTATTTTAGTAATTTTGTAAATCGAAGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATG
1 AGGGTAATTTGGTAATTTTATAAATCGAAGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
*
14372339 ATAATTCTATAAATTG
66 ATAATTCTATAAATCG
** * *
14372355 AGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGGGTAAAACG
1 AGGGTAATTTGGTAATTTTATAAATCGAAGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
*
14372420 GTAATTCTATAAATCG
66 ATAATTCTATAAATCG
* *
14372436 AGGGTACTTTGGTAATTTTACAAAT
1 AGGGTAATTTGGTAATTTTATAAAT
14372461 TGAGGACATT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 90 1.00
ACGTcount: A:0.39, C:0.06, G:0.21, T:0.34
Consensus pattern (81 bp):
AGGGTAATTTGGTAATTTTATAAATCGAAGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACG
ATAATTCTATAAATCG
Found at i:14372449 original size:27 final size:27
Alignment explanation
Indices: 14372151--14372465 Score: 179
Period size: 27 Copynumber: 11.7 Consensus size: 27
14372141 GGGCATTTCT
* *
14372151 GTAATTTTGT-AATC-AGGTGTATTTTG
1 GTAATTTTATAAATCGAGG-GTAATTTG
* * *
14372177 GTAATTTTACAAATTGAGGGTATTTTG
1 GTAATTTTATAAATCGAGGGTAATTTG
* * * *
14372204 GTAATTTCACAAA-CCAGTGGTATTTTG
1 GTAATTTTATAAATCGAG-GGTAATTTG
* * *
14372231 GTAATTTTACAAA-CTAGAGGTATTTTG
1 GTAATTTTATAAATCGAG-GGTAATTTG
* * * * *
14372258 GTAATTTTGTAAACCAAGGGTATTTTA
1 GTAATTTTATAAATCGAGGGTAATTTG
* * ***
14372285 GTAATTTTGTAAATCGAAGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAATTTG
* * * **
14372312 GTAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAATTTG
* * * **
14372339 ATAATTCTATAAATTGAGGGTAAAATG
1 GTAATTTTATAAATCGAGGGTAATTTG
****
14372366 GTAATTTTATAAATCGAGGGTAAAACA
1 GTAATTTTATAAATCGAGGGTAATTTG
* ***
14372393 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTTTATAAATCGAGGGTAATTTG
* *
14372420 GTAATTCTATAAATCGAGGGTACTTTG
1 GTAATTTTATAAATCGAGGGTAATTTG
* *
14372447 GTAATTTTACAAATTGAGG
1 GTAATTTTATAAATCGAGG
14372466 ACATTTTAGT
Statistics
Matches: 242, Mismatches: 43, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
26 10 0.04
27 226 0.93
28 6 0.02
ACGTcount: A:0.35, C:0.07, G:0.21, T:0.37
Consensus pattern (27 bp):
GTAATTTTATAAATCGAGGGTAATTTG
Found at i:14372454 original size:54 final size:54
Alignment explanation
Indices: 14372283--14372441 Score: 221
Period size: 54 Copynumber: 2.9 Consensus size: 54
14372273 AAGGGTATTT
* * *
14372283 TAGTAATTTTGTAAATCGAAGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAA
1 TAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
* * * * *
14372337 T-GATAATTCTATAAATTGAGGGTAAAATGGTAATTTTATAAATCGAGGGTAAAA
1 TAG-TAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
*
14372391 CAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
1 TAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTA
14372442 CTTTGGTAAT
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
53 1 0.01
54 87 0.98
55 1 0.01
ACGTcount: A:0.40, C:0.06, G:0.22, T:0.31
Consensus pattern (54 bp):
TAGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAA
Found at i:14375918 original size:31 final size:31
Alignment explanation
Indices: 14375880--14375942 Score: 101
Period size: 31 Copynumber: 2.0 Consensus size: 31
14375870 TTGCAATTTG
*
14375880 TTTTATA-TTTGCCTTCGGCCTTTACATCTAT
1 TTTTATATTTTCCCTT-GGCCTTTACATCTAT
14375911 TTTTATATTTTCCCTTGGCCTTTACATCTAT
1 TTTTATATTTTCCCTTGGCCTTTACATCTAT
14375942 T
1 T
14375943 CCCTTGGCCT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 23 0.77
32 7 0.23
ACGTcount: A:0.16, C:0.22, G:0.08, T:0.54
Consensus pattern (31 bp):
TTTTATATTTTCCCTTGGCCTTTACATCTAT
Found at i:14375944 original size:21 final size:21
Alignment explanation
Indices: 14375920--14375962 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
14375910 TTTTTATATT
14375920 TTCCCTTGGCCTTTACATCTA
1 TTCCCTTGGCCTTTACATCTA
14375941 TTCCCTTGGCCTTTACATCTA
1 TTCCCTTGGCCTTTACATCTA
14375962 T
1 T
14375963 CTCATCATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.14, C:0.33, G:0.09, T:0.44
Consensus pattern (21 bp):
TTCCCTTGGCCTTTACATCTA
Found at i:14377154 original size:15 final size:15
Alignment explanation
Indices: 14377134--14377181 Score: 78
Period size: 15 Copynumber: 3.2 Consensus size: 15
14377124 TTATCCTCAG
*
14377134 TTAGCAAACCCATTT
1 TTAGCAAACCCATCT
*
14377149 TTAGCAAACCCGTCT
1 TTAGCAAACCCATCT
14377164 TTAGCAAACCCATCT
1 TTAGCAAACCCATCT
14377179 TTA
1 TTA
14377182 ATATCTAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.31
Consensus pattern (15 bp):
TTAGCAAACCCATCT
Found at i:14377388 original size:41 final size:40
Alignment explanation
Indices: 14377343--14377652 Score: 286
Period size: 41 Copynumber: 7.7 Consensus size: 40
14377333 AAAACAGAGC
* *
14377343 AAAAAATGAGAAATAGCGACGTTTTTATCTAAAACGCCACT
1 AAAAACTGAGAAATAGCGGCGTTTTTATCT-AAACGCCACT
* ** * *
14377384 AAAAACAGATCAATAGTGGTGTTTTTATCTAAACGCCACT
1 AAAAACTGAGAAATAGCGGCGTTTTTATCTAAACGCCACT
* * * *
14377424 AAAAACTAAGGAAATAGTGGCATTTTTGTCCTAAACGCCACT
1 AAAAACTGA-GAAATAGCGGCGTTTTTAT-CTAAACGCCACT
* * ** * *
14377466 -AAAGCTAATCAATAGCGGTGTTTTTATCTAAAATGCCACT
1 AAAAACTGAGAAATAGCGGCGTTTTTATCT-AAACGCCACT
*
14377506 -AAAACTAGAGAAATAGCAGCGTTTTT-TCTAAACGCCACT
1 AAAAACT-GAGAAATAGCGGCGTTTTTATCTAAACGCCACT
** * *
14377545 AAAAACTGATCAATAGCGGCATTTTTATCCAAAACGCCACT
1 AAAAACTGAGAAATAGCGGCGTTTTTAT-CTAAACGCCACT
* * *
14377586 AAAAACTGGAGAAATAGCGGTGTTTTTGTCCAAACGCCACT
1 AAAAACT-GAGAAATAGCGGCGTTTTTATCTAAACGCCACT
**
14377627 -AAAACTGATCAATAGCGGCGTTTTTA
1 AAAAACTGAGAAATAGCGGCGTTTTTA
14377653 AGCCCAAACG
Statistics
Matches: 217, Mismatches: 44, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
39 42 0.19
40 60 0.28
41 87 0.40
42 28 0.13
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (40 bp):
AAAAACTGAGAAATAGCGGCGTTTTTATCTAAACGCCACT
Found at i:14377493 original size:81 final size:82
Alignment explanation
Indices: 14377350--14377652 Score: 354
Period size: 81 Copynumber: 3.7 Consensus size: 82
14377340 AGCAAAAAAT
* * * *
14377350 GAGAAATAGCGACGTTTTTAT-CTAAAACGCCACTAAAAAC-AGATCAATAGTGGTGTTTTTATC
1 GAGAAATAGCGGCGTTTTTGTCCT-AAACGCCACTAAAAACTA-ATCAATAGCGGCGTTTTTATC
14377413 TAAACGCCACTAAAAACTA
64 TAAACGCCACTAAAAACTA
* * * *
14377432 -AGGAAATAGTGGCATTTTTGTCCTAAACGCCACT-AAAGCTAATCAATAGCGGTGTTTTTATCT
1 GA-GAAATAGCGGCGTTTTTGTCCTAAACGCCACTAAAAACTAATCAATAGCGGCGTTTTTATCT
*
14377495 AAAATGCCACT-AAAACTA
65 -AAACGCCACTAAAAACTA
* * * *
14377513 GAGAAATAGCAGCGTTTTT-T-CTAAACGCCACTAAAAACTGATCAATAGCGGCATTTTTATCCA
1 GAGAAATAGCGGCGTTTTTGTCCTAAACGCCACTAAAAACTAATCAATAGCGGCGTTTTTAT-CT
*
14377576 AAACGCCACTAAAAACTG
65 AAACGCCACTAAAAACTA
* *
14377594 GAGAAATAGCGGTGTTTTTGTCC-AAACGCCACT-AAAACTGATCAATAGCGGCGTTTTTA
1 GAGAAATAGCGGCGTTTTTGTCCTAAACGCCACTAAAAACTAATCAATAGCGGCGTTTTTA
14377653 AGCCCAAACG
Statistics
Matches: 191, Mismatches: 20, Indels: 21
0.82 0.09 0.09
Matches are distributed among these distances:
79 12 0.06
80 33 0.17
81 96 0.50
82 47 0.25
83 3 0.02
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27
Consensus pattern (82 bp):
GAGAAATAGCGGCGTTTTTGTCCTAAACGCCACTAAAAACTAATCAATAGCGGCGTTTTTATCTA
AACGCCACTAAAAACTA
Found at i:14378171 original size:34 final size:36
Alignment explanation
Indices: 14378091--14378177 Score: 97
Period size: 34 Copynumber: 2.4 Consensus size: 36
14378081 GGTTAAGGCC
*
14378091 TATGGTTTAGGGTTGAAATGGTAGTATATATTTTAAATT
1 TATGGTTTAGGGTTGAAATGGTAG---ATATGTTAAATT
* *
14378130 TATGGTTTAGGGTT-CAATGGTAG-TATGTTAAGTT
1 TATGGTTTAGGGTTGAAATGGTAGATATGTTAAATT
*
14378164 TATGGTTTGGGGTT
1 TATGGTTTAGGGTT
14378178 TGTTATTTTG
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
34 22 0.50
38 8 0.18
39 14 0.32
ACGTcount: A:0.24, C:0.01, G:0.29, T:0.46
Consensus pattern (36 bp):
TATGGTTTAGGGTTGAAATGGTAGATATGTTAAATT
Found at i:14378270 original size:15 final size:15
Alignment explanation
Indices: 14378247--14378304 Score: 73
Period size: 15 Copynumber: 3.9 Consensus size: 15
14378237 TTTAAAGTGT
14378247 TTAGGGTTTAAGGTA
1 TTAGGGTTTAAGGTA
* *
14378262 TTAGTGTTTAAGGTT
1 TTAGGGTTTAAGGTA
*
14378277 TTAAGGG-TTAGGGTA
1 TT-AGGGTTTAAGGTA
14378292 TTAGGGTTTAAGG
1 TTAGGGTTTAAGG
14378305 GTTAGTTGAT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
14 4 0.11
15 28 0.80
16 3 0.09
ACGTcount: A:0.24, C:0.00, G:0.34, T:0.41
Consensus pattern (15 bp):
TTAGGGTTTAAGGTA
Found at i:14378270 original size:22 final size:21
Alignment explanation
Indices: 14378242--14378310 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 21
14378232 GATGTTTTAA
14378242 AGTGTTTAGGGTTTAAGGTATT
1 AGTGTTTAGGGTTTAAGG-ATT
* *
14378264 AGTGTTTAAGGTTTTAAGGGTT
1 AGTGTTT-AGGGTTTAAGGATT
* *
14378286 AGGGTATTAGGGTTTAAGGGTT
1 AGTGT-TTAGGGTTTAAGGATT
14378308 AGT
1 AGT
14378311 TGATTAAATG
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
22 28 0.70
23 12 0.30
ACGTcount: A:0.23, C:0.00, G:0.35, T:0.42
Consensus pattern (21 bp):
AGTGTTTAGGGTTTAAGGATT
Found at i:14379933 original size:27 final size:26
Alignment explanation
Indices: 14379891--14380050 Score: 212
Period size: 27 Copynumber: 6.0 Consensus size: 26
14379881 GTCACTAGAT
*
14379891 ACAGATATTGTGGCAGAGCCACCAGA
1 ACAGATAATGTGGCAGAGCCACCAGA
14379917 ACAGATATATGTGGCAGAGCCACCAGA
1 ACAGATA-ATGTGGCAGAGCCACCAGA
* *
14379944 TCAGATAATCGTGGCATAGCCACCAGA
1 ACAGATAAT-GTGGCAGAGCCACCAGA
* *
14379971 ACATATAATCGTGGCATAGCCACCAGA
1 ACAGATAAT-GTGGCAGAGCCACCAGA
14379998 ACAGATATATGTGGCAGAGCCACCAGA
1 ACAGATA-ATGTGGCAGAGCCACCAGA
* *
14380025 TCAGATAATTGTGGCATAGCCACCAG
1 ACAGATAA-TGTGGCAGAGCCACCAG
14380051 GACGCTTCCT
Statistics
Matches: 121, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.08
27 109 0.90
28 2 0.02
ACGTcount: A:0.35, C:0.24, G:0.24, T:0.17
Consensus pattern (26 bp):
ACAGATAATGTGGCAGAGCCACCAGA
Found at i:14379998 original size:81 final size:81
Alignment explanation
Indices: 14379900--14380050 Score: 284
Period size: 81 Copynumber: 1.9 Consensus size: 81
14379890 TACAGATATT
14379900 GTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCC
1 GTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCC
14379965 ACCAGAACATATAATC
66 ACCAGAACATATAATC
* *
14379981 GTGGCATAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCC
1 GTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCC
14380046 ACCAG
66 ACCAG
14380051 GACGCTTCCT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
81 68 1.00
ACGTcount: A:0.34, C:0.25, G:0.25, T:0.17
Consensus pattern (81 bp):
GTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCC
ACCAGAACATATAATC
Found at i:14381644 original size:26 final size:26
Alignment explanation
Indices: 14381608--14381724 Score: 207
Period size: 26 Copynumber: 4.5 Consensus size: 26
14381598 ACAAAAGACA
14381608 TAACCCATTATCATGGAACATTTACC
1 TAACCCATTATCATGGAACATTTACC
14381634 TAACCCATTATCATGGAACATTTACC
1 TAACCCATTATCATGGAACATTTACC
*
14381660 TAACCCATTATCATGAAACATTTACC
1 TAACCCATTATCATGGAACATTTACC
*
14381686 TAACCCATTATCATGGAACATTTACT
1 TAACCCATTATCATGGAACATTTACC
*
14381712 TAACTCATTATCA
1 TAACCCATTATCA
14381725 ATTTGTATCA
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 87 1.00
ACGTcount: A:0.36, C:0.26, G:0.06, T:0.32
Consensus pattern (26 bp):
TAACCCATTATCATGGAACATTTACC
Found at i:14382292 original size:41 final size:41
Alignment explanation
Indices: 14382186--14382303 Score: 130
Period size: 41 Copynumber: 2.9 Consensus size: 41
14382176 GTCTCCAAGG
* * * * *
14382186 GAATTAGTGGCGTTTTTAAAAATATCGCCTCTAAAAATAGA
1 GAATTAGCGGCGTTTTTAAAAAAAACACCGCTAAAAATAGA
* *
14382227 GAATTAGCGGCGTTTTTAAAAAAAACACTGCTAAAATTAGA
1 GAATTAGCGGCGTTTTTAAAAAAAACACCGCTAAAAATAGA
** *
14382268 GAATTAGCGGCGCTTTTT-TTAAAAACGCCGCTAAAA
1 GAATTAGCGGCG-TTTTTAAAAAAAACACCGCTAAAA
14382304 GCTTAATTAA
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
41 60 0.92
42 5 0.08
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (41 bp):
GAATTAGCGGCGTTTTTAAAAAAAACACCGCTAAAAATAGA
Found at i:14384309 original size:9 final size:9
Alignment explanation
Indices: 14384295--14384576 Score: 120
Period size: 9 Copynumber: 31.2 Consensus size: 9
14384285 TATTATTTAA
14384295 TACATAACT
1 TACATAACT
14384304 TACATAACT
1 TACATAACT
*
14384313 TATATAA--
1 TACATAACT
14384320 TACATAACT
1 TACATAACT
14384329 TACATAA--
1 TACATAACT
14384336 TACATAACT
1 TACATAACT
*
14384345 TACATAATT
1 TACATAACT
* *
14384354 TAAAGATCAAAT
1 T--ACAT-AACT
**
14384366 TTTATAACT
1 TACATAACT
*
14384375 TACATAATT
1 TACATAACT
14384384 TACATAACT
1 TACATAACT
14384393 TACATAA--
1 TACATAACT
* *
14384400 TACATGAGT
1 TACATAACT
*
14384409 TACATAATT
1 TACATAACT
* *
14384418 TAAAGATCAAAAT
1 T--ACAT--AACT
* *
14384431 TTCAAAACT
1 TACATAACT
*
14384440 TGCATAA--
1 TACATAACT
14384447 TACATAACT
1 TACATAACT
*
14384456 TACATAATT
1 TACATAACT
* *
14384465 TAAAGATCAAAT
1 T--ACAT-AACT
*
14384477 TTCATAACT
1 TACATAACT
14384486 TACATAA--
1 TACATAACT
14384493 TACATAACT
1 TACATAACT
*
14384502 TACATAATT
1 TACATAACT
* *
14384511 TAAAGATCAAAT
1 T--ACAT-AACT
*
14384523 TTCATAACT
1 TACATAACT
*
14384532 TACATAATT
1 TACATAACT
*
14384541 TAAATAACT
1 TACATAACT
14384550 TACATAA--
1 TACATAACT
*
14384557 TACATGACT
1 TACATAACT
*
14384566 TGCATAACT
1 TACATAACT
14384575 TA
1 TA
14384577 ATTATACTTA
Statistics
Matches: 202, Mismatches: 46, Indels: 50
0.68 0.15 0.17
Matches are distributed among these distances:
7 38 0.19
9 129 0.64
10 6 0.03
11 13 0.06
12 12 0.06
13 4 0.02
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (9 bp):
TACATAACT
Found at i:14384315 original size:25 final size:25
Alignment explanation
Indices: 14384287--14384508 Score: 115
Period size: 25 Copynumber: 9.0 Consensus size: 25
14384277 TTTTTAAATA
*
14384287 TTATTTAATACATAACTTACATAAC
1 TTATATAATACATAACTTACATAAC
14384312 TTATATAATACATAACTTACATAA-
1 TTATATAATACATAACTTACATAAC
* * * *
14384336 -TACATAACTTACATAATTTAAAGATCAAA
1 TTATATAA--TACATAACTT--ACAT-AAC
* *
14384365 TTTTATAACTTACATAATTTACATAAC
1 TTATATAA--TACATAACTTACATAAC
* * *
14384392 TTACATAATACATGAGTTACATAA-
1 TTATATAATACATAACTTACATAAC
* * * *
14384416 TT-TA-AAGATCA-AAATTTCAAAAC
1 TTATATAATA-CATAACTTACATAAC
**
14384439 TTGCATAATACATAACTTACATAA-
1 TTATATAATACATAACTTACATAAC
* *
14384463 TT-TA-AAGATCA-AA-TTTCATAAC
1 TTATATAATA-CATAACTTACATAAC
*
14384485 TTACATAATACATAACTTACATAA
1 TTATATAATACATAACTTACATAA
14384509 TTTAAAGATC
Statistics
Matches: 150, Mismatches: 29, Indels: 36
0.70 0.13 0.17
Matches are distributed among these distances:
21 7 0.05
22 17 0.11
23 17 0.11
24 12 0.08
25 64 0.43
27 11 0.07
28 5 0.03
30 17 0.11
ACGTcount: A:0.47, C:0.14, G:0.03, T:0.36
Consensus pattern (25 bp):
TTATATAATACATAACTTACATAAC
Found at i:14384325 original size:16 final size:16
Alignment explanation
Indices: 14384304--14384572 Score: 119
Period size: 16 Copynumber: 17.0 Consensus size: 16
14384294 ATACATAACT
*
14384304 TACATAACTTATATAA
1 TACATAACTTACATAA
14384320 TACATAACTTACATAA
1 TACATAACTTACATAA
14384336 TACATAACTTACATAA
1 TACATAACTTACATAA
** **
14384352 TTTA-AAGAT-CA-AA
1 TACATAACTTACATAA
**
14384365 TTTTATAACTTACATAA
1 -TACATAACTTACATAA
14384382 TTTACATAACTTACATAA
1 --TACATAACTTACATAA
* *
14384400 TACATGAGTTACATAA
1 TACATAACTTACATAA
** ** *
14384416 TTTA-AAGAT-CAAAA
1 TACATAACTTACATAA
* * *
14384430 TTTCAAAACTTGCATAA
1 -TACATAACTTACATAA
14384447 TACATAACTTACATAA
1 TACATAACTTACATAA
** **
14384463 TTTA-AAGAT-CA-AA
1 TACATAACTTACATAA
*
14384476 TTTCATAACTTACATAA
1 -TACATAACTTACATAA
14384493 TACATAACTTACATAA
1 TACATAACTTACATAA
** **
14384509 TTTA-AAGAT-CA-AA
1 TACATAACTTACATAA
*
14384522 TTTCATAACTTACATAA
1 -TACATAACTTACATAA
*
14384539 TTTAAATAACTTACATAA
1 --TACATAACTTACATAA
* *
14384557 TACATGACTTGCATAA
1 TACATAACTTACATAA
14384573 CTTAATTATA
Statistics
Matches: 193, Mismatches: 43, Indels: 34
0.71 0.16 0.13
Matches are distributed among these distances:
13 6 0.03
14 20 0.10
15 24 0.12
16 103 0.53
17 10 0.05
18 30 0.16
ACGTcount: A:0.47, C:0.14, G:0.03, T:0.35
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:14384402 original size:64 final size:63
Alignment explanation
Indices: 14384306--14384463 Score: 237
Period size: 64 Copynumber: 2.5 Consensus size: 63
14384296 ACATAACTTA
*
14384306 CATAACTTATATAATACATAACTTACATAATACATAACTTACATAATTTAAAGATC-AAATTT
1 CATAACTTACATAATACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAAATTT
* * *
14384368 TATAACTTACATAATTTACATAACTTACATAATACATGAGTTACATAATTTAAAGATCAAAATTT
1 CATAACTTACATAA--TACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAAATTT
* *
14384433 CAAAACTTGCATAATACATAACTTACATAAT
1 CATAACTTACATAATACATAACTTACATAAT
14384464 TTAAAGATCA
Statistics
Matches: 86, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
62 12 0.14
63 17 0.20
64 40 0.47
65 17 0.20
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (63 bp):
CATAACTTACATAATACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAAATTT
Found at i:14384490 original size:93 final size:94
Alignment explanation
Indices: 14384380--14384557 Score: 279
Period size: 93 Copynumber: 1.9 Consensus size: 94
14384370 TAACTTACAT
* * *
14384380 AATTTACATAACTTACATAATACATGAGTTACATAATTTAAAGATCAAAATTTCAAAACTTGCAT
1 AATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATC-AAATTTCAAAACTTACAT
*
14384445 AA-TACATAACTTACATAATTTAAAGATCA
65 AATTAAATAACTTACATAATTTAAAGATCA
*
14384474 AATTT-CATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCATAACTTACATA
1 AATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCAAAACTTACATA
14384538 ATTTAAATAACTTACATAAT
66 A-TTAAATAACTTACATAAT
14384558 ACATGACTTG
Statistics
Matches: 77, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
92 18 0.23
93 38 0.49
94 21 0.27
ACGTcount: A:0.48, C:0.14, G:0.03, T:0.35
Consensus pattern (94 bp):
AATTTACATAACTTACATAATACATAACTTACATAATTTAAAGATCAAATTTCAAAACTTACATA
ATTAAATAACTTACATAATTTAAAGATCA
Found at i:14384494 original size:46 final size:46
Alignment explanation
Indices: 14384380--14384557 Score: 275
Period size: 46 Copynumber: 3.8 Consensus size: 46
14384370 TAACTTACAT
* *
14384380 AATTTACATAACTTACATAATACATGAGTTACATAATTTAAAGATCAA
1 AATTT-CATAACTTACATAATACATAACTTACATAATTTAAAGATC-A
* *
14384428 AATTTCAAAACTTGCATAATACATAACTTACATAATTTAAAGATCA
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
14384474 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
1 AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
*
14384520 AATTTCATAACTTACATAATTTAAATAACTTACATAAT
1 AATTTCATAACTTACATAA--TACATAACTTACATAAT
14384558 ACATGACTTG
Statistics
Matches: 121, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
46 64 0.53
47 36 0.30
48 21 0.17
ACGTcount: A:0.48, C:0.14, G:0.03, T:0.35
Consensus pattern (46 bp):
AATTTCATAACTTACATAATACATAACTTACATAATTTAAAGATCA
Found at i:14388855 original size:13 final size:14
Alignment explanation
Indices: 14388839--14388867 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
14388829 TTATAAATAT
14388839 TTATAAT-GTTTAA
1 TTATAATGGTTTAA
14388852 TTATAATGGTTTAA
1 TTATAATGGTTTAA
14388866 TT
1 TT
14388868 CATGTTAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.55
Consensus pattern (14 bp):
TTATAATGGTTTAA
Found at i:14389284 original size:21 final size:21
Alignment explanation
Indices: 14389260--14389299 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
14389250 TAGAGCAGAG
*
14389260 GCAGCAGATAGGGAGGCAGCA
1 GCAGCAGAGAGGGAGGCAGCA
*
14389281 GCAGCAGCGAGGGAGGCAG
1 GCAGCAGAGAGGGAGGCAG
14389300 AGACGAGCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.30, C:0.20, G:0.47, T:0.03
Consensus pattern (21 bp):
GCAGCAGAGAGGGAGGCAGCA
Found at i:14389577 original size:22 final size:20
Alignment explanation
Indices: 14389552--14389591 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
14389542 ATGCTAAATT
*
14389552 TGCTATTTTTGGTTGCATTTCA
1 TGCTATATTT-GTTG-ATTTCA
14389574 TGCTATATTTGTTGATTT
1 TGCTATATTTGTTGATTT
14389592 TGGTTGGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 4 0.24
22 9 0.53
ACGTcount: A:0.15, C:0.10, G:0.17, T:0.57
Consensus pattern (20 bp):
TGCTATATTTGTTGATTTCA
Found at i:14389584 original size:31 final size:32
Alignment explanation
Indices: 14389524--14389607 Score: 82
Period size: 31 Copynumber: 2.6 Consensus size: 32
14389514 AGAATTAATG
* *
14389524 TTTTTGGTTGTATTTTTTATGCTAAATTTGCT-A
1 TTTTTGGTTGCA--TTTAATGCTAAATTTGCTGA
* * *
14389557 TTTTTGGTTGCATTTCATGCTATATTTGTTGA
1 TTTTTGGTTGCATTTAATGCTAAATTTGCTGA
*
14389589 -TTTTGGTTGGATTTAATGC
1 TTTTTGGTTGCATTTAATGC
14389608 AGGAAGGGCT
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
31 32 0.73
32 1 0.02
33 11 0.25
ACGTcount: A:0.17, C:0.07, G:0.19, T:0.57
Consensus pattern (32 bp):
TTTTTGGTTGCATTTAATGCTAAATTTGCTGA
Found at i:14393643 original size:15 final size:15
Alignment explanation
Indices: 14393623--14393652 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14393613 ATTCTGTTAT
*
14393623 CTGTTTGTGTGCATG
1 CTGTTTGTGGGCATG
14393638 CTGTTTGTGGGCATG
1 CTGTTTGTGGGCATG
14393653 TACACACTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.13, G:0.37, T:0.43
Consensus pattern (15 bp):
CTGTTTGTGGGCATG
Found at i:14402334 original size:44 final size:46
Alignment explanation
Indices: 14402284--14402374 Score: 116
Period size: 45 Copynumber: 2.0 Consensus size: 46
14402274 TATTTCCATT
* *
14402284 TCCATTT-TGAGAAAACCA-CATTCATTTCCAAAT-TATTTCATTTC
1 TCCATTTCGGAGAAAACCATAATT-ATTTCCAAATATATTTCATTTC
* *
14402328 TCCATTTCGGAGAAAACTATAATTATTTCCAAATATTTTTCATTTC
1 TCCATTTCGGAGAAAACCATAATTATTTCCAAATATATTTCATTTC
14402374 T
1 T
14402375 ATATTTCTAT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
44 7 0.17
45 19 0.47
46 14 0.35
ACGTcount: A:0.32, C:0.20, G:0.05, T:0.43
Consensus pattern (46 bp):
TCCATTTCGGAGAAAACCATAATTATTTCCAAATATATTTCATTTC
Found at i:14408547 original size:26 final size:26
Alignment explanation
Indices: 14408518--14408625 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
14408508 TGATACAAAT
14408518 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
14408544 TGATAATGGATTAGGTAAATATTCTA
1 TGATAATGGGTTAGGTAAATGTTCCA
14408570 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
14408596 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14408622 TGAT
1 TGAT
14408626 GGGCATTTCA
Statistics
Matches: 75, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 75 1.00
ACGTcount: A:0.32, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Done.