Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 51 of 295
Found at i:14650860 original size:46 final size:46
Alignment explanation
Indices: 14650806--14650916 Score: 195
Period size: 46 Copynumber: 2.4 Consensus size: 46
14650796 TTCAAATGTG
14650806 TAAGACCATGGTTGAAAGATACCATGACAACATGACAGGAAATAAA
1 TAAGACCATGGTTGAAAGATACCATGACAACATGACAGGAAATAAA
* *
14650852 TAAGACCATGGTTGAAAGATACCATGACAACATGACAGGAAATGAG
1 TAAGACCATGGTTGAAAGATACCATGACAACATGACAGGAAATAAA
*
14650898 TAAGACCATAGTTGAAAGA
1 TAAGACCATGGTTGAAAGA
14650917 AAATGAGTAA
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 62 1.00
ACGTcount: A:0.46, C:0.14, G:0.22, T:0.18
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGACAACATGACAGGAAATAAA
Found at i:14650925 original size:26 final size:26
Alignment explanation
Indices: 14650891--14650942 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
14650881 ACATGACAGG
14650891 AAATGAGTAAGACCATAGTTGAAAGA
1 AAATGAGTAAGACCATAGTTGAAAGA
14650917 AAATGAGTAAGACCATAGTTGAAAGA
1 AAATGAGTAAGACCATAGTTGAAAGA
14650943 CACTATGGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.50, C:0.08, G:0.23, T:0.19
Consensus pattern (26 bp):
AAATGAGTAAGACCATAGTTGAAAGA
Found at i:14655308 original size:23 final size:22
Alignment explanation
Indices: 14655263--14655320 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
14655253 AAGCGGTATC
* *
14655263 TACAAATCAAATC-TCTAAAAT
1 TACAAATTATATCTTCTAAAAT
*
14655284 TACAAAATTATATCTTCTAAGAT
1 TAC-AAATTATATCTTCTAAAAT
*
14655307 TACATATTATATCT
1 TACAAATTATATCT
14655321 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.45, C:0.16, G:0.02, T:0.38
Consensus pattern (22 bp):
TACAAATTATATCTTCTAAAAT
Found at i:14655681 original size:18 final size:18
Alignment explanation
Indices: 14655660--14655707 Score: 78
Period size: 19 Copynumber: 2.6 Consensus size: 18
14655650 ATTAATTAAC
14655660 TTAACTTAATTTGTTTTT
1 TTAACTTAATTTGTTTTT
14655678 TTAAACTTAATTTGTTTTT
1 TT-AACTTAATTTGTTTTT
*
14655697 TTAACTCAATT
1 TTAACTTAATT
14655708 CTAATTTCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
18 10 0.36
19 18 0.64
ACGTcount: A:0.27, C:0.08, G:0.04, T:0.60
Consensus pattern (18 bp):
TTAACTTAATTTGTTTTT
Found at i:14661983 original size:7 final size:7
Alignment explanation
Indices: 14661971--14661996 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
14661961 AGTGCAGTTG
14661971 CTTCTCC
1 CTTCTCC
14661978 CTTCTCC
1 CTTCTCC
14661985 CTTCTCC
1 CTTCTCC
14661992 CTTCT
1 CTTCT
14661997 TTCTCCTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.54, G:0.00, T:0.46
Consensus pattern (7 bp):
CTTCTCC
Found at i:14662028 original size:28 final size:31
Alignment explanation
Indices: 14661971--14662029 Score: 79
Period size: 28 Copynumber: 2.0 Consensus size: 31
14661961 AGTGCAGTTG
*
14661971 CTTCTCCCTTCTCCCTTCTCCCTTCTTTCTC
1 CTTCTCCCTTCTCCCTTCTCCCTTATTTCTC
*
14662002 CTTCT-CCTTC-CCCTT-TCTCTTATTTCTC
1 CTTCTCCCTTCTCCCTTCTCCCTTATTTCTC
14662030 TATTATGGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 11 0.42
29 5 0.19
30 5 0.19
31 5 0.19
ACGTcount: A:0.02, C:0.47, G:0.00, T:0.51
Consensus pattern (31 bp):
CTTCTCCCTTCTCCCTTCTCCCTTATTTCTC
Found at i:14663423 original size:28 final size:28
Alignment explanation
Indices: 14663383--14663465 Score: 166
Period size: 28 Copynumber: 3.0 Consensus size: 28
14663373 TGGGCACAAA
14663383 GATGCTGAATTTAATAGTTTCAACTTAT
1 GATGCTGAATTTAATAGTTTCAACTTAT
14663411 GATGCTGAATTTAATAGTTTCAACTTAT
1 GATGCTGAATTTAATAGTTTCAACTTAT
14663439 GATGCTGAATTTAATAGTTTCAACTTA
1 GATGCTGAATTTAATAGTTTCAACTTA
14663466 GGATTGTGAT
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 55 1.00
ACGTcount: A:0.33, C:0.11, G:0.14, T:0.42
Consensus pattern (28 bp):
GATGCTGAATTTAATAGTTTCAACTTAT
Found at i:14666249 original size:117 final size:117
Alignment explanation
Indices: 14666052--14666517 Score: 496
Period size: 117 Copynumber: 4.0 Consensus size: 117
14666042 CTTGTTCTCT
* * * ** *
14666052 AATTTCATTTTCATCGGAACTA-AG--TCTATGCCTTCCACGATGCTCAAAGGGATCACTTACAG
1 AATTTCATTTCCATCGGAACTATGGCTTCTACGCCTTTGACGATGCTCAAGGGGATCACTTACAG
* * * *
14666114 A-TCTAGCTCCCAAGAAATGATGCCTGA-GAAGAGGCCAGCCGAAAGGTTCTTG
66 ATTC-AGCTCCCAAGAAATGACGCCTGAGGAA-AGGCCAACCTAAAGATTCTTG
* ** * *** * *
14666166 ATTTTCATTTTGACCGGAACTATGGAAGCTACACCTTTGACGATGCTCAAGGGGATTACTTACAG
1 AATTTCATTTCCATCGGAACTATGGCTTCTACGCCTTTGACGATGCTCAAGGGGATCACTTACAG
** *
14666231 ATTCAGCTCCC-AGAAAATGACGCCTGAGGAAAGGCCGGCCTAAAGATTCTAG
66 ATTCAGCTCCCAAG-AAATGACGCCTGAGGAAAGGCCAACCTAAAGATTCTTG
* * * * * *
14666283 AATTTCATTTCCATTGGAACCATAGCTTCTACGCCTTTGACGATGCTCAAGGTGATTACTTATAG
1 AATTTCATTTCCATCGGAACTATGGCTTCTACGCCTTTGACGATGCTCAAGGGGATCACTTACAG
* * * * *
14666348 ATTCTGCTCCCAAGAAATAACGCCCGAGGAAAGGCCAAACTAAAGGTTCTTG
66 ATTCAGCTCCCAAGAAATGACGCCTGAGGAAAGGCCAACCTAAAGATTCTTG
* *
14666400 AATTTCATTTCCATCAGAACTATGGCTTCTACGCCTTTGACGATGCTCAAGGGGATCACTTATAG
1 AATTTCATTTCCATCGGAACTATGGCTTCTACGCCTTTGACGATGCTCAAGGGGATCACTTACAG
* * * *
14666465 ATTC-GACTTCTAGGAAATGATGCCTGAGGAAAGGCCAACCTAAAGATTCTTG
66 ATTCAG-CTCCCAAGAAATGACGCCTGAGGAAAGGCCAACCTAAAGATTCTTG
14666517 A
1 A
14666518 TTATTAGAAC
Statistics
Matches: 293, Mismatches: 51, Indels: 13
0.82 0.14 0.04
Matches are distributed among these distances:
114 19 0.06
115 1 0.00
116 3 0.01
117 263 0.90
118 7 0.02
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.27
Consensus pattern (117 bp):
AATTTCATTTCCATCGGAACTATGGCTTCTACGCCTTTGACGATGCTCAAGGGGATCACTTACAG
ATTCAGCTCCCAAGAAATGACGCCTGAGGAAAGGCCAACCTAAAGATTCTTG
Found at i:14666497 original size:234 final size:234
Alignment explanation
Indices: 14666088--14666514 Score: 565
Period size: 234 Copynumber: 1.8 Consensus size: 234
14666078 TATGCCTTCC
* * * **
14666088 ACGATGCTCAAAGGGATCACTTACAGATCTAGCTCCCAAGAAATGATGCCTGAGAAGAGGCCAGC
1 ACGATGCTCAAAGGGATCACTTACAGATCTAGCTCCCAAGAAATAACGCCCGAGAAGAGGCCAAA
* ** *
14666153 CGAAAGGTTCTTGATTTTCATTTTGACCGGAACTATGGAAGCTACACCTTTGACGATGCTCAAGG
66 CGAAAGGTTCTTGAATTTCATTTCCACCAGAACTATGGAAGCTACACCTTTGACGATGCTCAAGG
* **
14666218 GGATTACTTACAGATTCAGCTCCCAGAAAATGACGCCTGAGGAAAGGCCGGCCTAAAGATTCTAG
131 GGATCACTTACAGATTCAGCTCCCAGAAAATGACGCCTGAGGAAAGGCCAACCTAAAGATTCTAG
14666283 AATTTCATTTCCATTGGAACCATAGCTTCTACGCCTTTG
196 AATTTCATTTCCATTGGAACCATAGCTTCTACGCCTTTG
* *
14666322 ACGATGCTC-AAGGTGATTACTTATAGATTCT-GCTCCCAAGAAATAACGCCCGAGGAA-AGGCC
1 ACGATGCTCAAAGG-GATCACTTACAGA-TCTAGCTCCCAAGAAATAACGCCCGA-GAAGAGGCC
* * *** *
14666384 AAACTAAAGGTTCTTGAATTTCATTTCCATCAGAACTATGGCTTCTACGCCTTTGACGATGCTCA
63 AAACGAAAGGTTCTTGAATTTCATTTCCACCAGAACTATGGAAGCTACACCTTTGACGATGCTCA
* * * * *
14666449 AGGGGATCACTTATAGATTC-GACTTCTAGGAAATGATGCCTGAGGAAAGGCCAACCTAAAGATT
128 AGGGGATCACTTACAGATTCAG-CTCCCAGAAAATGACGCCTGAGGAAAGGCCAACCTAAAGATT
14666513 CT
192 CT
14666515 TGATTATTAG
Statistics
Matches: 164, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
233 5 0.03
234 153 0.93
235 6 0.04
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (234 bp):
ACGATGCTCAAAGGGATCACTTACAGATCTAGCTCCCAAGAAATAACGCCCGAGAAGAGGCCAAA
CGAAAGGTTCTTGAATTTCATTTCCACCAGAACTATGGAAGCTACACCTTTGACGATGCTCAAGG
GGATCACTTACAGATTCAGCTCCCAGAAAATGACGCCTGAGGAAAGGCCAACCTAAAGATTCTAG
AATTTCATTTCCATTGGAACCATAGCTTCTACGCCTTTG
Found at i:14666665 original size:150 final size:150
Alignment explanation
Indices: 14666400--14666827 Score: 547
Period size: 150 Copynumber: 2.9 Consensus size: 150
14666390 AAGGTTCTTG
* * * *
14666400 AATTTCATTTCCATCAGAACTATGGCTTCTACGCCTTTGACGATGCTCAAGGGGATCACTTATAG
1 AATTTCATTTCCATCAGAACTATGGCTTCTACGCCTTCGACGATGCTCAAGGGGATTATTTACAG
* * * * *
14666465 ATTCGACTTCTAGGAAATGATGCCTGAGGAAAGGCCAACCTAAAGATTCTTGATTATTAGAACGT
66 ATTCGGCTCCTAGTAAATGATGCCTGAGCAAAGGCCAACCTAAAGGTTCTTGATTATTAGAACGT
14666530 TGTAC-GTGTTCTTGTTCTCT
131 TGTACAG-GTTCTTGTTCTCT
* ** * * *
14666550 AATTTCACTTCCATGGGAACTATGGCTTCTACACCTTCGACGATGCTCCAGGGGATTATTTACAA
1 AATTTCATTTCCATCAGAACTATGGCTTCTACGCCTTCGACGATGCTCAAGGGGATTATTTACAG
* * * * *
14666615 ATTCGGCTCCCAGTAAATGACT-TCTGAGCAACGGCCAACCTAAAGGTTCTTGATTATCAAAACG
66 ATTCGGCTCCTAGTAAATGA-TGCCTGAGCAAAGGCCAACCTAAAGGTTCTTGATTATTAGAACG
*
14666679 TTGTGCAGGTTCTTGTTCTCT
130 TTGTACAGGTTCTTGTTCTCT
* * *
14666700 AATTTCATTTCCATCAAAACTATGGCTTCTACGCCCTCGAAGA-GACTCAAGGGGATTATTTACA
1 AATTTCATTTCCATCAGAACTATGGCTTCTACGCCTTCGACGATG-CTCAAGGGGATTATTTACA
* * * * *
14666764 GATTCGGGTCCTAGTAAACGATGCCCGAGCAAAGGCCAACCTATAGGTTCTTGATTATTGGAAC
65 GATTCGGCTCCTAGTAAATGATGCCTGAGCAAAGGCCAACCTAAAGGTTCTTGATTATTAGAAC
14666828 AATCACGATT
Statistics
Matches: 234, Mismatches: 40, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
149 2 0.01
150 230 0.98
151 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (150 bp):
AATTTCATTTCCATCAGAACTATGGCTTCTACGCCTTCGACGATGCTCAAGGGGATTATTTACAG
ATTCGGCTCCTAGTAAATGATGCCTGAGCAAAGGCCAACCTAAAGGTTCTTGATTATTAGAACGT
TGTACAGGTTCTTGTTCTCT
Found at i:14669548 original size:5 final size:6
Alignment explanation
Indices: 14669531--14669555 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
14669521 ATATCTCATT
14669531 ATAAAA ATAAAA ATAAAA ATAAAA A
1 ATAAAA ATAAAA ATAAAA ATAAAA A
14669556 AACTTTCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (6 bp):
ATAAAA
Found at i:14669660 original size:34 final size:35
Alignment explanation
Indices: 14669616--14669682 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
14669606 CAGTAAAATA
* * *
14669616 TTTTCCGTAAAATGA-TTTCTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGACTTACAGGAAAATATTTTAC
*
14669650 TTTTCTGTAAAATGACTTACAGGAAAATATTTT
1 TTTTCCGTAAAATGACTTACAGGAAAATATTTT
14669683 CTGGTGTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 14 0.50
35 14 0.50
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.43
Consensus pattern (35 bp):
TTTTCCGTAAAATGACTTACAGGAAAATATTTTAC
Found at i:14669669 original size:20 final size:20
Alignment explanation
Indices: 14669631--14669669 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
14669621 CGTAAAATGA
**
14669631 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGACTTACT
*
14669651 TTTCTGTAAAATGACTTAC
1 TTTCTGGAAAATGACTTAC
14669670 AGGAAAATAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (20 bp):
TTTCTGGAAAATGACTTACT
Found at i:14674626 original size:19 final size:19
Alignment explanation
Indices: 14674583--14674631 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
14674573 TATGCTTTTT
*
14674583 ATATTTTTATACTTTTTAAT
1 ATATTTTTATA-TTTTTAAA
14674603 A-ATTTTTAT-TTTTTAAAA
1 ATATTTTTATATTTTT-AAA
14674621 ATATTTTTATA
1 ATATTTTTATA
14674632 ATCTTTTTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
17 5 0.20
18 3 0.12
19 16 0.64
20 1 0.04
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (19 bp):
ATATTTTTATATTTTTAAA
Found at i:14683281 original size:19 final size:19
Alignment explanation
Indices: 14683257--14683294 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
14683247 CTAAGAAGTA
14683257 AGTACTCAAACTCAAAGCT
1 AGTACTCAAACTCAAAGCT
14683276 AGTACTCAAACTCAAAGCT
1 AGTACTCAAACTCAAAGCT
14683295 TATAAGAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.26, G:0.11, T:0.21
Consensus pattern (19 bp):
AGTACTCAAACTCAAAGCT
Found at i:14684197 original size:26 final size:26
Alignment explanation
Indices: 14684160--14684217 Score: 107
Period size: 26 Copynumber: 2.2 Consensus size: 26
14684150 TGATACAAAT
14684160 TGATAATAGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
*
14684186 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTTCA
14684212 TGATAA
1 TGATAA
14684218 GAATTTCATG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.34, C:0.03, G:0.24, T:0.38
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTTCA
Found at i:14688484 original size:25 final size:25
Alignment explanation
Indices: 14688456--14688515 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
14688446 GAACTACCTG
*
14688456 ATTTATAGCTTATATGAGCTTCCCA
1 ATTTACAGCTTATATGAGCTTCCCA
* * *
14688481 ATTTGCAGCTTGTATGAGCTTCCCG
1 ATTTACAGCTTATATGAGCTTCCCA
*
14688506 ATTCACAGCT
1 ATTTACAGCT
14688516 CATGAGAGCA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (25 bp):
ATTTACAGCTTATATGAGCTTCCCA
Found at i:14689645 original size:10 final size:10
Alignment explanation
Indices: 14689632--14689669 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
14689622 TTATTTTCAT
14689632 TTATCTTTAA
1 TTATCTTTAA
14689642 TTATCTTTAA
1 TTATCTTTAA
*
14689652 TTAT-TTGTAT
1 TTATCTT-TAA
14689662 TTATCTTT
1 TTATCTTT
14689670 TAGAATTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.24, C:0.08, G:0.03, T:0.66
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:14690428 original size:39 final size:39
Alignment explanation
Indices: 14690393--14690466 Score: 109
Period size: 39 Copynumber: 2.0 Consensus size: 39
14690383 AATTTTAACT
14690393 TTTTAA-ATTTC-A-ATCAAAAATTTTAATTCTGTTTTA
1 TTTTAATATTTCTAGATCAAAAATTTTAATTCTGTTTTA
* *
14690429 TTTTAATTTTTCTAGATCAAAACTTTTAATTCTGTTTT
1 TTTTAATATTTCTAGATCAAAAATTTTAATTCTGTTTT
14690467 TTTATTTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
36 6 0.18
37 4 0.12
38 1 0.03
39 22 0.67
ACGTcount: A:0.31, C:0.09, G:0.04, T:0.55
Consensus pattern (39 bp):
TTTTAATATTTCTAGATCAAAAATTTTAATTCTGTTTTA
Found at i:14698497 original size:96 final size:97
Alignment explanation
Indices: 14698333--14698516 Score: 291
Period size: 96 Copynumber: 1.9 Consensus size: 97
14698323 TTTTTAAGAA
* * *
14698333 TGTGTTGGACTGAGTAACCGGGGTGAGGTGCTTGGCTGTCATCTCTCTTCCCGTAAAAAGGTTCG
1 TGTGTTGGACTGAGTAAACGGGGTGAGGTGCTTGGCTGTCATCTCTCTTCACGTAAAAAGATTCG
*
14698398 ATATGTTCTTAA-GAAAAATAAAAATTAGGAG
66 ATATATTCTTAAGGAAAAATAAAAATTAGGAG
* *
14698429 TGTGTTGTG-CTGAGTAAACGGGGTTAGGTGCTTGGCTGTCATCTCTCTTCACGTCAAAAGATTC
1 TGTGTTG-GACTGAGTAAACGGGGTGAGGTGCTTGGCTGTCATCTCTCTTCACGTAAAAAGATTC
14698493 GATATATTCTTAAGGAAAAATAAA
65 GATATATTCTTAAGGAAAAATAAA
14698517 TAAATAATAA
Statistics
Matches: 80, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
96 69 0.86
97 11 0.14
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.32
Consensus pattern (97 bp):
TGTGTTGGACTGAGTAAACGGGGTGAGGTGCTTGGCTGTCATCTCTCTTCACGTAAAAAGATTCG
ATATATTCTTAAGGAAAAATAAAAATTAGGAG
Found at i:14699149 original size:10 final size:10
Alignment explanation
Indices: 14699134--14699183 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
14699124 TAGTTTTAGG
14699134 ATTTAT-TTT
1 ATTTATCTTT
14699143 CATTTATCTTT
1 -ATTTATCTTT
*
14699154 AATTATCTTT
1 ATTTATCTTT
14699164 ATTTAT-TTGT
1 ATTTATCTT-T
14699174 ATTTATCTTT
1 ATTTATCTTT
14699184 TAGAATTTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.22, C:0.08, G:0.02, T:0.68
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:14701361 original size:54 final size:54
Alignment explanation
Indices: 14701291--14701407 Score: 182
Period size: 54 Copynumber: 2.2 Consensus size: 54
14701281 TTAGGGTTAC
* *
14701291 TAAGACTATGAGTAAGACCATATCTGGGATATGGAATCAATATGAGACTACATG
1 TAAGACTATGAGTAAGACCATATCTAGGATATGGAATCAATATGAAACTACATG
* *
14701345 TAAGACTATGTA-TAAGACCATATCTAGGATATGGAATCAATATTAAACTACGTG
1 TAAGACTATG-AGTAAGACCATATCTAGGATATGGAATCAATATGAAACTACATG
14701399 TAAGACTAT
1 TAAGACTAT
14701408 ATCTGGGATA
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
54 57 0.98
55 1 0.02
ACGTcount: A:0.40, C:0.13, G:0.19, T:0.28
Consensus pattern (54 bp):
TAAGACTATGAGTAAGACCATATCTAGGATATGGAATCAATATGAAACTACATG
Found at i:14701404 original size:42 final size:42
Alignment explanation
Indices: 14701347--14701550 Score: 210
Period size: 42 Copynumber: 4.8 Consensus size: 42
14701337 ACTACATGTA
* * * *
14701347 AGACTATGTATAAGACCATATCTAGGATATGGAATCAATATT
1 AGACTACGTGTAAGACCATATCTAGGATATGGCATCAATATG
* * *
14701389 AAACTACGTGTAAGACTATATCTGGGATATGGCATCAATATG
1 AGACTACGTGTAAGACCATATCTAGGATATGGCATCAATATG
* * *
14701431 AGACTACGTATAAGACCATATCTGGGATATGGCATCGATATG
1 AGACTACGTGTAAGACCATATCTAGGATATGGCATCAATATG
* * * ** *
14701473 AGACTTCGTGTAAGACCATAGCTAGGCTATTGGCATTGATACG
1 AGACTACGTGTAAGACCATATCTAGGATA-TGGCATCAATATG
* * * * *
14701516 ACATTACATGTAAGACCATATTTGGGATATGGCAT
1 AGACTACGTGTAAGACCATATCTAGGATATGGCAT
14701551 TGGTAAGGTA
Statistics
Matches: 135, Mismatches: 26, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
42 103 0.76
43 32 0.24
ACGTcount: A:0.34, C:0.15, G:0.22, T:0.29
Consensus pattern (42 bp):
AGACTACGTGTAAGACCATATCTAGGATATGGCATCAATATG
Found at i:14702527 original size:18 final size:18
Alignment explanation
Indices: 14702503--14702650 Score: 179
Period size: 18 Copynumber: 8.2 Consensus size: 18
14702493 TATCAATATC
*
14702503 ATTCAGTAACAATCAATT
1 ATTCAGTAACAGTCAATT
* *
14702521 GTTCAGTAACAGTCGATT
1 ATTCAGTAACAGTCAATT
*
14702539 ATTCAGTAACAGTCATTT
1 ATTCAGTAACAGTCAATT
*
14702557 ATTCAGAAACAGTCAATT
1 ATTCAGTAACAGTCAATT
* * *
14702575 ATTCAGTAATAATCAGTT
1 ATTCAGTAACAGTCAATT
*
14702593 ATTCAGTAACAGTCATTT
1 ATTCAGTAACAGTCAATT
*
14702611 ATTCAGTAACAGTTAATT
1 ATTCAGTAACAGTCAATT
* * *
14702629 ATTCATTAACAATCAGTT
1 ATTCAGTAACAGTCAATT
14702647 ATTC
1 ATTC
14702651 GATACTTTTA
Statistics
Matches: 109, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 109 1.00
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.36
Consensus pattern (18 bp):
ATTCAGTAACAGTCAATT
Found at i:14702580 original size:54 final size:54
Alignment explanation
Indices: 14702503--14702650 Score: 217
Period size: 54 Copynumber: 2.7 Consensus size: 54
14702493 TATCAATATC
* * *
14702503 ATTCAGTAACAATCAATTGTTCAGTAACAGTC-GATTATTCAGTAACAGTCATTT
1 ATTCAGTAACAGTCAATTATTCAGTAACAATCAG-TTATTCAGTAACAGTCATTT
* *
14702557 ATTCAGAAACAGTCAATTATTCAGTAATAATCAGTTATTCAGTAACAGTCATTT
1 ATTCAGTAACAGTCAATTATTCAGTAACAATCAGTTATTCAGTAACAGTCATTT
* *
14702611 ATTCAGTAACAGTTAATTATTCATTAACAATCAGTTATTC
1 ATTCAGTAACAGTCAATTATTCAGTAACAATCAGTTATTC
14702651 GATACTTTTA
Statistics
Matches: 84, Mismatches: 9, Indels: 2
0.88 0.09 0.02
Matches are distributed among these distances:
54 83 0.99
55 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.36
Consensus pattern (54 bp):
ATTCAGTAACAGTCAATTATTCAGTAACAATCAGTTATTCAGTAACAGTCATTT
Found at i:14702783 original size:6 final size:6
Alignment explanation
Indices: 14702767--14702800 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
14702757 AACAGGAATT
*
14702767 AGTAAC GGTAAC AGTAAC AGTAAC AGTAAC AGTA
1 AGTAAC AGTAAC AGTAAC AGTAAC AGTAAC AGTA
14702801 TTCAACACAC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.47, C:0.15, G:0.21, T:0.18
Consensus pattern (6 bp):
AGTAAC
Found at i:14702830 original size:45 final size:45
Alignment explanation
Indices: 14702780--14702890 Score: 168
Period size: 45 Copynumber: 2.5 Consensus size: 45
14702770 AACGGTAACA
* * *
14702780 GTAACAGTAACAGTAACAGTATTCAACACACAAAGTGTTGAATCT
1 GTAACAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAATCG
**
14702825 GTAACAGTAACGGTAACAGTATTTGACACACAAAGTGTCGAATCG
1 GTAACAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAATCG
*
14702870 GTAACAGTAACGGTAATAGTA
1 GTAACAGTAACGGTAACAGTA
14702891 ACAGTAGTTG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 60 1.00
ACGTcount: A:0.41, C:0.16, G:0.20, T:0.23
Consensus pattern (45 bp):
GTAACAGTAACGGTAACAGTATTCAACACACAAAGTGTCGAATCG
Found at i:14703654 original size:17 final size:15
Alignment explanation
Indices: 14703626--14703659 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
14703616 TCCCTATTTC
14703626 TCCCTTTTCTTTCTT
1 TCCCTTTTCTTTCTT
14703641 TCCCTTTTTCCTTTCTT
1 TCCC-TTTT-CTTTCTT
14703658 TC
1 TC
14703660 TTTCTCTCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 4 0.24
17 9 0.53
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (15 bp):
TCCCTTTTCTTTCTT
Found at i:14704435 original size:16 final size:16
Alignment explanation
Indices: 14704414--14704453 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
14704404 AAATTGTTTC
*
14704414 ATAATATAATATAATT-
1 ATAATATAAT-CAATTA
14704430 ATAATATAATCAATTA
1 ATAATATAATCAATTA
14704446 ATAATATA
1 ATAATATA
14704454 TAATATATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (16 bp):
ATAATATAATCAATTA
Found at i:14716724 original size:25 final size:25
Alignment explanation
Indices: 14716659--14716718 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
14716649 GCGGGCACAC
*
14716659 CACAGCTCGTATGAACTTCCCAATT
1 CACAGCTCGTATGAGCTTCCCAATT
*
14716684 TACAGCTCGTATGAGCTT-CCAGATT
1 CACAGCTCGTATGAGCTTCCCA-ATT
14716709 CACAGCTCGT
1 CACAGCTCGT
14716719 GAGAGCATAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 3 0.10
25 28 0.90
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (25 bp):
CACAGCTCGTATGAGCTTCCCAATT
Found at i:14725811 original size:22 final size:22
Alignment explanation
Indices: 14725770--14725816 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
14725760 TTTGTTGTTG
*
14725770 TTTCGCTACTATTTTACTATCA
1 TTTCGCTACTATATTACTATCA
* * *
14725792 TTTCGCTATTATATTGCTATTA
1 TTTCGCTACTATATTACTATCA
14725814 TTT
1 TTT
14725817 TCTTGTTATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.21, C:0.17, G:0.06, T:0.55
Consensus pattern (22 bp):
TTTCGCTACTATATTACTATCA
Found at i:14726858 original size:19 final size:19
Alignment explanation
Indices: 14726809--14726858 Score: 50
Period size: 19 Copynumber: 2.7 Consensus size: 19
14726799 ATTTTTCCCT
*
14726809 TAAAATTA-ATAAAAATTA
1 TAAAATTATAAAAAAATTA
* *
14726827 CAAAA-AATAAAAAAAATTA
1 TAAAATTAT-AAAAAAATTA
14726846 TAAAATTATAAAA
1 TAAAATTATAAAA
14726859 TAAAAATAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 5
0.71 0.15 0.15
Matches are distributed among these distances:
17 1 0.04
18 4 0.17
19 17 0.71
20 2 0.08
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.26
Consensus pattern (19 bp):
TAAAATTATAAAAAAATTA
Found at i:14726876 original size:5 final size:6
Alignment explanation
Indices: 14726829--14726875 Score: 51
Period size: 6 Copynumber: 7.7 Consensus size: 6
14726819 AAAAATTACA
* *
14726829 AAAAAT AAAAA- AAATTAT AAAATT ATAAAAT AAAAAT AAAAAT AAAA
1 AAAAAT AAAAAT AAA-AAT AAAAAT A-AAAAT AAAAAT AAAAAT AAAA
14726876 TCAACAAATA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
5 3 0.09
6 23 0.68
7 8 0.24
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (6 bp):
AAAAAT
Found at i:14726884 original size:25 final size:25
Alignment explanation
Indices: 14726830--14726901 Score: 67
Period size: 25 Copynumber: 2.9 Consensus size: 25
14726820 AAAATTACAA
* *
14726830 AAAATAAAAAAAATTATAAAATTAT
1 AAAATAAAAAAAATAATAAAATCAT
14726855 AAAATAAAAATAAA-AATAAAATCA-
1 AAAATAAAAA-AAATAATAAAATCAT
** *
14726879 ACAAATATTAAAAATATTAAAAT
1 A-AAATAAAAAAAATAATAAAAT
14726902 TGATATAAAC
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
24 4 0.10
25 32 0.82
26 3 0.08
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (25 bp):
AAAATAAAAAAAATAATAAAATCAT
Found at i:14727153 original size:9 final size:9
Alignment explanation
Indices: 14727139--14727189 Score: 59
Period size: 9 Copynumber: 5.7 Consensus size: 9
14727129 TAAAATCAGC
14727139 AAATATTAA
1 AAATATTAA
14727148 AAATATTAA
1 AAATATTAA
*
14727157 AATTATATAA
1 AAATAT-TAA
**
14727167 ACTTATTAA
1 AAATATTAA
14727176 AAATA-TAA
1 AAATATTAA
14727184 AAATAT
1 AAATAT
14727190 AAATATTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
8 8 0.22
9 20 0.56
10 8 0.22
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (9 bp):
AAATATTAA
Found at i:14727562 original size:239 final size:240
Alignment explanation
Indices: 14726860--14728380 Score: 1350
Period size: 266 Copynumber: 6.1 Consensus size: 240
14726850 ATTATAAAAT
*
14726860 AAAAATAAAAATAAAATCAACAAATATTAAAAATATTAAAATTGATATAAACTTATTAAAACTAT
1 AAAAAT-AAAATAAAAT--A-AAATATTAAAAATATTAAAATTGATATAAAATTATTAAAACTAT
* * **
14726925 AAAAAATTATATAATAATATAAATATTTATAAATATATAATCAATTAAGCCATTTCGTTAACGGT
62 AAAAAATTATATAATAATATAAATATTTATAAATATATAATCAATTAAGCCCTTCCGTTAACAAT
** * * * * *
14726990 TTTTGTCATTGACCATGATGACTATTAAAATAAACTGACAGATCAATCAGATGGTAACACATGGC
127 TTCAGTCATTGACCACGTTGACCATTAAAATAAACTGACAGATCAATCAGATGGTGACACATGGA
* *
14727055 AGTTTCAGGCACAATCTACTATTTTACCCTTAAAACTAATAAAAATTACA
192 AGTTTCAGGCACAATCTA-TATTTTTCCCTTAAAACTGATAAAAATTACA
* * *
14727105 AATATATATAAAATAAAATAAAAATAAAATCAGCAAATATTAAAAAT-AT-TAAAATTA-TATAA
1 AA-A-A-ATAAAATAAAAT-AAAAT---ATTA-AAAATATTAAAATTGATATAAAATTATTA-AA
* *
14727167 ACTTATTAAAAA-TATA-AA-AATATAAATATTTATAAATATATAATTAATTAAG-CCTTCCGTT
57 AC-TATAAAAAATTATATAATAATATAAATATTTATAAATATATAATCAATTAAGCCCTTCCGTT
* * *
14727228 AATAATTTCAGTCATCGACCACGTTAACCATTAAAATAAACTGACAGATCAATCAGATGGTGACA
121 AACAATTTCAGTCATTGACCACGTTGACCATTAAAATAAACTGACAGATCAATCAGATGGTGACA
*
14727293 CATGGCAA-TTTCAGGCACAATCTCATATTTTTCCCTTAAAACTGATTAAAATTACA
186 CATGG-AAGTTTCAGGCACAATCT-ATATTTTTCCCTTAAAACTGATAAAAATTACA
* *
14727349 AAAAATAAAAT-CAAT-AAATATTAAAAATATTAAAATTGATATAAACTTATTAAAACTATAAAA
1 AAAAATAAAATAAAATAAAATATTAAAAATATTAAAATTGATATAAAATTATTAAAACTATAAAA
* ** *
14727412 AATTATATAATAATATAAATATTTATAAATATATAATCAATTAAGCCCTTTCGTTAACGGTTTCT
66 AATTATATAATAATATAAATATTTATAAATATATAATCAATTAAGCCCTTCCGTTAACAATTTCA
* * * *
14727477 GTCATTGACCACGTTGACCAATAAAATAAATTGACAGATCAATTATATGGTGACACATGGAAGTT
131 GTCATTGACCACGTTGACCATTAAAATAAACTGACAGATCAATCAGATGGTGACACATGGAAGTT
* *
14727542 TCAAGCACGATCTGATATTTTTCCCTTAAAACTGATAAAAATTACAAA
196 TCAGGCACAATCT-ATATTTTTCCCTTAAAACTGATAAAAATTAC--A
14727590 ATAAAATACAAAATAAAATCAGCAAATATTAAAAATATTAAAATTGATATAAAATTATTAAAACT
1 A-AAAAT--AAAATAAAAT-A--AAATATTAAAAATATTAAAATTGATATAAAATTATTAAAACT
* * *
14727655 ATAAAAATATATATATAATAATAGAAATATTTATAAATATATAATCAATTAAGCTCTTCCATTAA
60 ATAAAAA-AT-TATATAATAATATAAATATTTATAAATATATAATCAATTAAGCCCTTCCGTTAA
* * * * * *
14727720 TAATTTCAGTCATCT-ATCATGTTGACCGTTAAAATAAATTGACAGATCAATAAGAT-G-G--AC
123 CAATTTCAGTCAT-TGACCACGTTGACCATTAAAATAAACTGACAGATCAATCAGATGGTGACAC
* * *
14727780 ATAGCAGTTTCAGGCACAATCTAATATTTTTCCCTTAAAACTGATAAAAATTAAA
187 ATGGAAGTTTCAGGCACAATCT-ATATTTTTCCCTTAAAACTGATAAAAATTACA
* *
14727835 AGAAAAGTAAAAAATTTTATAAAATAAAAAATAAAATCAAAAAATATTAAAAAT-AT-TAAAATT
1 A-AAAA-T---AAA----ATAAAAT--AAAAT---AT-TAAAAATATTAAAATTGATATAAAATT
* * * *
14727898 AATATAAACTTATTAAAACTATAATAGATTATATAATAATTAAATATTTATCAATATATAATCAA
51 ATTA-AAAC-TA-TAAAA-AAT--TATA-TA-ATAAT-A-TAAATATTTATAAATATATAATCAA
* * ** * *** * **
14727963 TTAAGCCATTTCGTTAACGGTTTCTGTCATTGACCACGTTGAAGGTTAAAATAGACTGATGGATC
106 TTAAGCCCTTCCGTTAACAATTTCAGTCATTGACCACGTTGACCATTAAAATAAACTGACAGATC
* * * ** * * *
14728028 AATCATATGGTGATACATGGTAGTTTCAAACACGATCTAATATTTTTCTCTTAAAATTGATAAAA
171 AATCAGATGGTGACACATGGAAGTTTCAGGCACAATCT-ATATTTTTCCCTTAAAACTGATAAAA
*
14728093 ATTGATA
235 ATT-ACA
* * *
14728100 AAAATTACAAAAATAAAACAATTATAAAAAATAAAATCAGCAAATATTAAAAATATTAAAATTGA
1 AAAA--A-TAAAAT---A-AA--AT--AAAAT---ATTA-AAAATATT---AA-A--A---TTGA
* * *
14728165 TATAAACTTATGAAAACTATAAAAAAATATATAATAATATAAATATTTATAAATATATAATCAAT
42 TATAAAATTATTAAAACTATAAAAAATTATATAATAATATAAATATTTATAAATATATAATCAAT
** * * * **
14728230 TAAGCCCTTCCGTTAACGGTTTCTA-TCATTGACCACATTGACCGTTAAAATAAAGTGATGGATC
107 TAAGCCCTTCCGTTAACAATTTC-AGTCATTGACCACGTTGACCATTAAAATAAACTGACAGATC
* * *
14728294 AAGCAGATGGTGACACATGGGAGTTTCAGGCACAATCTAATATTTTTCCCTTAAAATTGATAAAA
171 AATCAGATGGTGACACATGGAAGTTTCAGGCACAATCT-ATATTTTTCCCTTAAAACTGATAAAA
*
14728359 ATCACA
235 ATTACA
*
14728365 AAAAATAAAAAAAAAT
1 AAAAATAAAATAAAAT
14728381 TATAAAATAA
Statistics
Matches: 1062, Mismatches: 135, Indels: 147
0.79 0.10 0.11
Matches are distributed among these distances:
234 12 0.01
235 13 0.01
236 15 0.01
237 4 0.00
238 39 0.04
239 111 0.10
240 3 0.00
241 9 0.01
242 6 0.01
243 1 0.00
244 116 0.11
245 50 0.05
246 8 0.01
247 80 0.08
248 15 0.01
249 61 0.06
250 7 0.01
251 101 0.10
252 12 0.01
253 8 0.01
254 16 0.02
255 7 0.01
256 6 0.01
257 2 0.00
258 7 0.01
259 5 0.00
260 76 0.07
261 1 0.00
262 6 0.01
263 6 0.01
264 51 0.05
265 30 0.03
266 140 0.13
267 1 0.00
268 7 0.01
269 3 0.00
270 3 0.00
271 1 0.00
272 1 0.00
273 5 0.00
274 3 0.00
275 6 0.01
276 8 0.01
ACGTcount: A:0.48, C:0.12, G:0.08, T:0.32
Consensus pattern (240 bp):
AAAAATAAAATAAAATAAAATATTAAAAATATTAAAATTGATATAAAATTATTAAAACTATAAAA
AATTATATAATAATATAAATATTTATAAATATATAATCAATTAAGCCCTTCCGTTAACAATTTCA
GTCATTGACCACGTTGACCATTAAAATAAACTGACAGATCAATCAGATGGTGACACATGGAAGTT
TCAGGCACAATCTATATTTTTCCCTTAAAACTGATAAAAATTACA
Found at i:14727601 original size:12 final size:12
Alignment explanation
Indices: 14727579--14727608 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
14727569 AAAACTGATA
14727579 AAAATTACAAAAT
1 AAAA-TACAAAAT
14727592 AAAATACAAAAT
1 AAAATACAAAAT
14727604 AAAAT
1 AAAAT
14727609 CAGCAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 13 0.76
13 4 0.24
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (12 bp):
AAAATACAAAAT
Found at i:14727633 original size:17 final size:18
Alignment explanation
Indices: 14727616--14727664 Score: 55
Period size: 20 Copynumber: 2.7 Consensus size: 18
14727606 AATCAGCAAA
*
14727616 TATTAAAAATATTAAAAT
1 TATTAAAAATATTAAAAC
*
14727634 TGATATAAAATTATTAAAAC
1 T-AT-TAAAAATATTAAAAC
14727654 TA-TAAAAATAT
1 TATTAAAAATAT
14727665 ATATATAATA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
17 8 0.31
18 1 0.04
19 3 0.12
20 14 0.54
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (18 bp):
TATTAAAAATATTAAAAC
Found at i:14727665 original size:8 final size:9
Alignment explanation
Indices: 14727613--14727664 Score: 52
Period size: 9 Copynumber: 5.7 Consensus size: 9
14727603 TAAAATCAGC
14727613 AAATATTAA
1 AAATATTAA
14727622 AAATATTAA
1 AAATATTAA
*
14727631 AATTGATATAA
1 AAAT-AT-TAA
*
14727642 AATTATTAA
1 AAATATTAA
*
14727651 AACTA-TAA
1 AAATATTAA
14727659 AAATAT
1 AAATAT
14727665 ATATATAATA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
8 7 0.19
9 19 0.51
10 4 0.11
11 7 0.19
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.35
Consensus pattern (9 bp):
AAATATTAA
Found at i:14727896 original size:30 final size:31
Alignment explanation
Indices: 14727823--14727896 Score: 84
Period size: 30 Copynumber: 2.5 Consensus size: 31
14727813 CTTAAAACTG
* *
14727823 ATAAAA-ATTAAAAGAAAAGTAAAAAATTTT
1 ATAAAATATTAAAATAAAAGTAAAAAATATT
*
14727853 ATAAAATA-AAAAATAAAA-TCAAAAAATATT
1 ATAAAATATTAAAATAAAAGT-AAAAAATATT
14727883 A-AAAATATTAAAAT
1 ATAAAATATTAAAAT
14727897 TAATATAAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
29 7 0.19
30 29 0.78
31 1 0.03
ACGTcount: A:0.70, C:0.01, G:0.03, T:0.26
Consensus pattern (31 bp):
ATAAAATATTAAAATAAAAGTAAAAAATATT
Found at i:14728095 original size:10 final size:10
Alignment explanation
Indices: 14728080--14728105 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
14728070 TTTTTCTCTT
14728080 AAAATTGATA
1 AAAATTGATA
14728090 AAAATTGATA
1 AAAATTGATA
14728100 AAAATT
1 AAAATT
14728106 ACAAAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (10 bp):
AAAATTGATA
Found at i:14728128 original size:17 final size:18
Alignment explanation
Indices: 14728102--14728135 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14728092 AATTGATAAA
14728102 AATTAC-AAAAATAAAAC
1 AATTACAAAAAATAAAAC
*
14728119 AATTATAAAAAATAAAA
1 AATTACAAAAAATAAAA
14728136 TCAGCAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.21
Consensus pattern (18 bp):
AATTACAAAAAATAAAAC
Found at i:14728334 original size:266 final size:265
Alignment explanation
Indices: 14727587--14728498 Score: 1029
Period size: 266 Copynumber: 3.4 Consensus size: 265
14727577 TAAAAATTAC
* * *
14727587 AAAATAA-AATACAAAATAAAATCAGCAAATATTAAAAATATTAAAATTGATATAAAATTATTAA
1 AAAATAATAATAAAAAATAAAATCAACAAATATTAAAAATATTAAAATTGATATAAACTTATTAA
*
14727651 AACTATAAAAATATATATATAATAATAGAAATATTTATAAATATATAATCAATTAAGCTC-TTCC
66 AACTATAAAAA-A-ATATATAATAATATAAATATTTATAAATATATAATCAATTAAGC-CATTCC
* *** * ** * * ** **
14727715 ATTAATAATTTC-AGTCATCT-ATCATGTTGACCGTTAAAATAAATTGACAGATCAATAAGAT-G
128 GTTAACGGTTTCTA-TCAT-TGACCACATTGAACGTTAAAATAAACTGATGGATCAAGCAGATGG
* * *
14727777 -G--ACATAGCAGTTTCAGGCACAATCTAATATTTTTCCCTTAAAACTGATAAAAATTAAAAGAA
191 TGACACATGGGAGTTTCAGGCACAATCTAATATTTTTCCCTTAAAATTGATAAAAATTAAAA-AA
*
14727839 AAGTAAAAAAT
255 AATTAAAAAAT
*** * *
14727850 TTTATAA-AATAAAAAATAAAATCAAAAAATATTAAAAATATTAAAATTAATATAAACTTATTAA
1 AAAATAATAATAAAAAATAAAATCAACAAATATTAAAAATATTAAAATTGATATAAACTTATTAA
* * * * *
14727914 AACTATAATAGATTATATAATAAT-TAAATATTTATCAATATATAATCAATTAAGCCATTTCGTT
66 AACTATAAAAAAATATATAATAATATAAATATTTATAAATATATAATCAATTAAGCCATTCCGTT
* * * * * * *
14727978 AACGGTTTCTGTCATTGACCACGTTGAAGGTTAAAATAGACTGATGGATCAATCATATGGTGATA
131 AACGGTTTCTATCATTGACCACATTGAACGTTAAAATAAACTGATGGATCAAGCAGATGGTGACA
* ** * * * *
14728043 CATGGTAGTTTCAAACACGATCTAATATTTTTCTCTTAAAATTGATAAAAATTGATAAAAATTAC
196 CATGGGAGTTTCAGGCACAATCTAATATTTTTCCCTTAAAATTGATAAAAATTAAAAAAAATTA-
14728108 AAAAAT
260 AAAAAT
* * * *
14728114 AAAACAATTATAAAAAATAAAATCAGCAAATATTAAAAATATTAAAATTGATATAAACTTATGAA
1 AAAATAATAATAAAAAATAAAATCAACAAATATTAAAAATATTAAAATTGATATAAACTTATTAA
*
14728179 AACTATAAAAAAATATATAATAATATAAATATTTATAAATATATAATCAATTAAGCCCTTCCGTT
66 AACTATAAAAAAATATATAATAATATAAATATTTATAAATATATAATCAATTAAGCCATTCCGTT
* *
14728244 AACGGTTTCTATCATTGACCACATTGACCGTTAAAATAAAGTGATGGATCAAGCAGATGGTGACA
131 AACGGTTTCTATCATTGACCACATTGAACGTTAAAATAAACTGATGGATCAAGCAGATGGTGACA
14728309 CATGGGAGTTTCAGGCACAATCTAATATTTTTCCCTTAAAATTGATAAAAATCACAAAAAATAAA
196 CATGGGAGTTTCAGGCACAATCTAATATTTTTCCCTTAAAATTGATAAAAAT---------T-AA
*
14728374 AAAAAATTATAAAAT
251 AAAAAATTAAAAAAT
* *
14728389 AAAATAATAAATAATAAATAAAGTCAACAAATATTAAAAATATTAAAATTGATATAAACTTATTA
1 AAAATAAT-AATAAAAAATAAAATCAACAAATATTAAAAATATTAAAATTGATATAAACTTATTA
* * * * * *
14728454 AAATTATATAATAATATA-AATATTATAAA-AATTATAAAAATATAA
65 AAACTATAAAAAAATATATAATAATATAAATATTTATAAATATATAA
14728499 AAATTCTAAT
Statistics
Matches: 545, Mismatches: 83, Indels: 31
0.83 0.13 0.05
Matches are distributed among these distances:
259 2 0.00
260 75 0.14
261 12 0.02
262 2 0.00
263 71 0.13
264 58 0.11
265 73 0.13
266 140 0.26
274 14 0.03
275 23 0.04
276 75 0.14
ACGTcount: A:0.51, C:0.10, G:0.08, T:0.32
Consensus pattern (265 bp):
AAAATAATAATAAAAAATAAAATCAACAAATATTAAAAATATTAAAATTGATATAAACTTATTAA
AACTATAAAAAAATATATAATAATATAAATATTTATAAATATATAATCAATTAAGCCATTCCGTT
AACGGTTTCTATCATTGACCACATTGAACGTTAAAATAAACTGATGGATCAAGCAGATGGTGACA
CATGGGAGTTTCAGGCACAATCTAATATTTTTCCCTTAAAATTGATAAAAATTAAAAAAAATTAA
AAAAT
Found at i:14728372 original size:511 final size:502
Alignment explanation
Indices: 14726860--14728376 Score: 1832
Period size: 483 Copynumber: 3.0 Consensus size: 502
14726850 ATTATAAAAT
*
14726860 AAAAAT-AAAAATAAAATCAACAAATATTAAAAATATTAAAATTGATATAAACTTATTAAAACTA
1 AAAAATAAAAAATAAAATCAAAAAATATTAAAAATATTAAAATTGATATAAACTTATTAAAACTA
14726924 TAAAAAATTATATAATAATATAAATATTTATAAATATATAATCAATTAAGCCATTTCGTTAACGG
66 TAAAAAATTATATAATAATATAAATATTTATAAATATATAATCAATTAAGCCATTTCGTTAACGG
* * * * * *
14726989 TTTTTGTCATTGACCATGATGACTATTAAAATAAACTGACAGATCAATCAGATGGTAACACATGG
131 TTTCTGTCATTGACCACGTTGACCATTAAAATAAACTGACAGATCAATCATATGGTGACACATGG
* * * * * * * *
14727054 CAGTTTCAGGCACAATCTACTATTTTACCCTTAAAACTAATAAAAATT-ACAAATATATATAAAA
196 AAGTTTCAAGCACGATCTAATATTTT-TCCTTAAAACT-ATAAAAATTGATAAAAAT-TACAAAA
14727118 TAAAAT-AAAAATAAAATCAGCAAATATTAAAAATATTAAAATT-ATATAAAC-T-T---A-T-T
258 TAAAATAAAAAATAAAATCAGCAAATATTAAAAATATTAAAATTGATATAAACTTATAAAACTAT
*
14727174 --AAAAATATA-AA-AATATAAATATTTATAAATATATAATTAATTAAG-CCTTCCGTTAATAAT
323 AAAAAAATATATAATAATATAAATATTTATAAATATATAATCAATTAAGCCCTTCCGTTAATAAT
* * *
14727234 TTCAGTCATCGACCACGTTAACCATTAAAATAAACTGACAGATCAATCAGATGGTGACACATGGC
388 TTCAGTCATTGACCACGTTGACCGTTAAAATAAACTGACAGATCAATCAGATGGTGACACATGGC
* * * * *
14727299 AATTTCAGGCACAATCTCATATTTTTCCCTTAAAACTGATTAAAATTAC-
453 AGTTTCAGGCACAATCTAATATTTTTCCCTTAAAATTGATAAAAATAACA
*
14727348 ------AAAAAATAAAATCAATAAATATTAAAAATATTAAAATTGATATAAACTTATTAAAACTA
1 AAAAATAAAAAATAAAATCAAAAAATATTAAAAATATTAAAATTGATATAAACTTATTAAAACTA
*
14727407 TAAAAAATTATATAATAATATAAATATTTATAAATATATAATCAATTAAGCCCTTTCGTTAACGG
66 TAAAAAATTATATAATAATATAAATATTTATAAATATATAATCAATTAAGCCATTTCGTTAACGG
* * *
14727472 TTTCTGTCATTGACCACGTTGACCAATAAAATAAATTGACAGATCAATTATATGGTGACACATGG
131 TTTCTGTCATTGACCACGTTGACCATTAAAATAAACTGACAGATCAATCATATGGTGACACATGG
* *
14727537 AAGTTTCAAGCACGATCTGATATTTTTCC------CT-T-AAAACTGATAAAAATTACAAAATAA
196 AAGTTTCAAGCACGATCTAATATTTTTCCTTAAAACTATAAAAATTGATAAAAATTACAAAATAA
* *
14727594 AATACAAAATAAAATCAGCAAATATTAAAAATATTAAAATTGATATAAAATTATTAAAACTATAA
261 AATAAAAAATAAAATCAGCAAATATTAAAAATATTAAAATTGATATAAACTTA-TAAAACTATAA
* * *
14727659 AAATATATATATAATAATAGAAATATTTATAAATATATAATCAATTAAGCTCTTCCATTAATAAT
325 AAA-A-ATATATAATAATATAAATATTTATAAATATATAATCAATTAAGCCCTTCCGTTAATAAT
* * * * *
14727724 TTCAGTCATCT-ATCATGTTGACCGTTAAAATAAATTGACAGATCAATAAGAT-G-G--ACATAG
388 TTCAGTCAT-TGACCACGTTGACCGTTAAAATAAACTGACAGATCAATCAGATGGTGACACATGG
* *
14727784 CAGTTTCAGGCACAATCTAATATTTTTCCCTTAAAACTGATAAAAATTAAAAGAAAAGTAAAAAA
452 CAGTTTCAGGCACAATCTAATATTTTTCCCTTAAAA-T--T---GA-T---A-AAAA-T--AACA
*
14727849 TTTTATAAAATAAAAAATAAAATCAAAAAATATTAAAAATATTAAAATTAATATAAACTTATTAA
1 ----A-AAAATAAAAAATAAAATCAAAAAATATTAAAAATATTAAAATTGATATAAACTTATTAA
* * *
14727914 AACTATAATAGATTATATAATAAT-TAAATATTTATCAATATATAATCAATTAAGCCATTTCGTT
61 AACTATAAAAAATTATATAATAATATAAATATTTATAAATATATAATCAATTAAGCCATTTCGTT
*** * ** *
14727978 AACGGTTTCTGTCATTGACCACGTTGAAGGTTAAAATAGACTGATGGATCAATCATATGGTGATA
126 AACGGTTTCTGTCATTGACCACGTTGACCATTAAAATAAACTGACAGATCAATCATATGGTGACA
* * *
14728043 CATGGTAGTTTCAAACACGATCTAATATTTTTCTCTTAAAATTGATAAAAATTGATAAAAATTAC
191 CATGGAAGTTTCAAGCACGATCTAATATTTTTC-CTTAAAACT-ATAAAAATTGATAAAAATTAC
14728108 AAAAATAAAACAATTATAAAAAATAAAATCAGCAAATATTAAAAATATTAAAATTGATATAAACT
254 -AAAAT---A-AA--ATAAAAAATAAAATCAGCAAATATTAAAAATATTAAAATTGATATAAACT
14728173 TATGAAAACTATAAAAAAATATATAATAATATAAATATTTATAAATATATAATCAATTAAGCCCT
312 TAT-AAAACTATAAAAAAATATATAATAATATAAATATTTATAAATATATAATCAATTAAGCCCT
*** * * ** *
14728238 TCCGTTAACGGTTTCTA-TCATTGACCACATTGACCGTTAAAATAAAGTGATGGATCAAGCAGAT
376 TCCGTTAATAATTTC-AGTCATTGACCACGTTGACCGTTAAAATAAACTGACAGATCAATCAGAT
* *
14728302 GGTGACACATGGGAGTTTCAGGCACAATCTAATATTTTTCCCTTAAAATTGATAAAAATCACA
440 GGTGACACATGGCAGTTTCAGGCACAATCTAATATTTTTCCCTTAAAATTGATAAAAATAACA
14728365 AAAAATAAAAAA
1 AAAAATAAAAAA
14728377 AAATTATAAA
Statistics
Matches: 875, Mismatches: 84, Indels: 117
0.81 0.08 0.11
Matches are distributed among these distances:
473 17 0.02
474 43 0.05
475 7 0.01
476 3 0.00
478 1 0.00
481 1 0.00
482 3 0.00
483 199 0.23
485 3 0.00
486 40 0.05
487 5 0.01
488 3 0.00
489 34 0.04
490 57 0.07
492 1 0.00
493 1 0.00
497 4 0.00
498 1 0.00
500 1 0.00
511 134 0.15
512 76 0.09
516 2 0.00
518 2 0.00
519 4 0.00
520 2 0.00
521 17 0.02
522 5 0.01
523 1 0.00
524 1 0.00
525 2 0.00
526 95 0.11
527 5 0.01
528 64 0.07
529 1 0.00
530 40 0.05
ACGTcount: A:0.48, C:0.12, G:0.08, T:0.32
Consensus pattern (502 bp):
AAAAATAAAAAATAAAATCAAAAAATATTAAAAATATTAAAATTGATATAAACTTATTAAAACTA
TAAAAAATTATATAATAATATAAATATTTATAAATATATAATCAATTAAGCCATTTCGTTAACGG
TTTCTGTCATTGACCACGTTGACCATTAAAATAAACTGACAGATCAATCATATGGTGACACATGG
AAGTTTCAAGCACGATCTAATATTTTTCCTTAAAACTATAAAAATTGATAAAAATTACAAAATAA
AATAAAAAATAAAATCAGCAAATATTAAAAATATTAAAATTGATATAAACTTATAAAACTATAAA
AAAATATATAATAATATAAATATTTATAAATATATAATCAATTAAGCCCTTCCGTTAATAATTTC
AGTCATTGACCACGTTGACCGTTAAAATAAACTGACAGATCAATCAGATGGTGACACATGGCAGT
TTCAGGCACAATCTAATATTTTTCCCTTAAAATTGATAAAAATAACA
Found at i:14728472 original size:8 final size:8
Alignment explanation
Indices: 14728459--14728502 Score: 52
Period size: 8 Copynumber: 5.2 Consensus size: 8
14728449 TATTAAAATT
*
14728459 ATATAATA
1 ATATAAAA
14728467 ATATAAATA
1 ATATAAA-A
*
14728476 TTATAAAA
1 ATATAAAA
14728484 ATTATAAAA
1 A-TATAAAA
14728493 ATATAAAA
1 ATATAAAA
14728501 AT
1 AT
14728503 TCTAATAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
8 16 0.52
9 15 0.48
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (8 bp):
ATATAAAA
Found at i:14728502 original size:28 final size:25
Alignment explanation
Indices: 14728460--14728520 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 25
14728450 ATTAAAATTA
*
14728460 TATAATAATATAAATATTATAAAAAT
1 TATAAAAATATAAAT-TTATAAAAAT
* *
14728486 TATAAAAATATAAAAATTCTAATAAAT
1 TATAAAAATAT-AAATTTATAA-AAAT
14728513 TATAAAAA
1 TATAAAAA
14728521 AATTATAAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 15 0.50
27 15 0.50
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (25 bp):
TATAAAAATATAAATTTATAAAAAT
Found at i:14728533 original size:19 final size:18
Alignment explanation
Indices: 14728450--14728539 Score: 53
Period size: 20 Copynumber: 4.9 Consensus size: 18
14728440 ATATAAACTT
* *
14728450 ATTA-AAATTATATAATA
1 ATTATAAATTATAAAAAA
*
14728467 A-TATAAA-TATTATAAAA
1 ATTATAAATTA-TAAAAAA
*
14728484 ATTATAAA-AATATAAAAA
1 ATTATAAATTATA-AAAAA
*
14728502 TTCTAATAAATTATAAAAAA
1 AT-T-ATAAATTATAAAAAA
14728522 ATTATAAGATTAATAAAA
1 ATTATAA-ATT-ATAAAA
14728540 CTTATTTAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 15
0.73 0.08 0.19
Matches are distributed among these distances:
16 4 0.07
17 13 0.22
18 16 0.28
19 5 0.09
20 17 0.29
21 3 0.05
ACGTcount: A:0.63, C:0.01, G:0.01, T:0.34
Consensus pattern (18 bp):
ATTATAAATTATAAAAAA
Found at i:14728611 original size:24 final size:26
Alignment explanation
Indices: 14728584--14728645 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 26
14728574 GAATTCTTAC
14728584 AAAATAATAAAAAATTG-TA-AAAAT
1 AAAATAATAAAAAATTGTTATAAAAT
* * *
14728608 AAAA-ATTATTAAAATTGTTATGAAAT
1 AAAATAATA-AAAAATTGTTATAAAAT
14728634 -AAATAATAAAAA
1 AAAATAATAAAAA
14728646 GAATAAAAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
23 3 0.10
24 11 0.38
25 8 0.28
26 7 0.24
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (26 bp):
AAAATAATAAAAAATTGTTATAAAAT
Found at i:14729174 original size:18 final size:17
Alignment explanation
Indices: 14729148--14729190 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
14729138 TACTTATACT
*
14729148 TTAAGTATAAGATATTTA
1 TTAATTATAAGATA-TTA
*
14729166 TTAATTATAATATATTA
1 TTAATTATAAGATATTA
14729183 TTATATTA
1 TTA-ATTA
14729191 ACTATTAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 6 0.27
18 16 0.73
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (17 bp):
TTAATTATAAGATATTA
Found at i:14732328 original size:3 final size:3
Alignment explanation
Indices: 14732320--14732359 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
14732310 ATTGAGGAGT
14732320 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
14732360 AGAAGTAGGT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:14736308 original size:44 final size:43
Alignment explanation
Indices: 14736211--14736323 Score: 129
Period size: 44 Copynumber: 2.6 Consensus size: 43
14736201 TGATTTACTT
* *
14736211 TTTATGTGATTCAATTATTCTAATATAAACTCATGGTTTACTA
1 TTTATGTGATTCAATTATACTAATATAAACTCATGGTTTACCA
* *
14736254 TTTCACGTGATTCAATTATACTAATGTAAACTTC-TGGTTTACCA
1 TTT-ATGTGATTCAATTATACTAATATAAAC-TCATGGTTTACCA
* **
14736298 TTGTATGTGATTTAACCATACTAATA
1 TT-TATGTGATTCAATTATACTAATA
14736324 CATGTATAGT
Statistics
Matches: 58, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
43 3 0.05
44 52 0.90
45 3 0.05
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.43
Consensus pattern (43 bp):
TTTATGTGATTCAATTATACTAATATAAACTCATGGTTTACCA
Found at i:14737938 original size:25 final size:24
Alignment explanation
Indices: 14737902--14737954 Score: 79
Period size: 25 Copynumber: 2.2 Consensus size: 24
14737892 CACAAACACA
14737902 GCTCTTTATGAGCGTCCTGATATAG
1 GCTCTTTATGAGCGTCCTGATAT-G
* *
14737927 GCTCTTTTTGAGCTTCCTGATATG
1 GCTCTTTATGAGCGTCCTGATATG
14737951 GCTC
1 GCTC
14737955 ACTTGAACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 5 0.19
25 21 0.81
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.40
Consensus pattern (24 bp):
GCTCTTTATGAGCGTCCTGATATG
Found at i:14737965 original size:23 final size:24
Alignment explanation
Indices: 14737916--14737978 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 24
14737906 TTTATGAGCG
** *
14737916 TCCTGATATAGGCTCTTTTTGAGCT
1 TCCTGATAT-GGCTCTACTTGAACT
14737941 TCCTGATATGGCTC-ACTTGAACT
1 TCCTGATATGGCTCTACTTGAACT
14737964 TCCTGTTATATGGCT
1 TCCTG--ATATGGCT
14737979 ATCCGAAGCT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
23 11 0.33
24 5 0.15
25 17 0.52
ACGTcount: A:0.17, C:0.22, G:0.19, T:0.41
Consensus pattern (24 bp):
TCCTGATATGGCTCTACTTGAACT
Found at i:14738046 original size:23 final size:24
Alignment explanation
Indices: 14738018--14738064 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
14738008 GAGTTACCTG
14738018 TTAAACTC-AATGAGCTTCCTGTT
1 TTAAACTCTAATGAGCTTCCTGTT
* *
14738041 TTAAACTCTTATGAGTTTCCTGTT
1 TTAAACTCTAATGAGCTTCCTGTT
14738065 ATAGCCTGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 8 0.38
24 13 0.62
ACGTcount: A:0.23, C:0.19, G:0.13, T:0.45
Consensus pattern (24 bp):
TTAAACTCTAATGAGCTTCCTGTT
Found at i:14741952 original size:10 final size:10
Alignment explanation
Indices: 14741939--14741998 Score: 54
Period size: 9 Copynumber: 6.2 Consensus size: 10
14741929 TTTTATGATT
14741939 TTTTTATAAA
1 TTTTTATAAA
14741949 -TTTTATAAA
1 TTTTTATAAA
* * *
14741958 CTTATATCAA
1 TTTTTATAAA
14741968 TTTTTAT-AA
1 TTTTTATAAA
*
14741977 TTTTTAT-GA
1 TTTTTATAAA
14741986 TTTTTATAGAA
1 TTTTTATA-AA
14741997 TT
1 TT
14741999 CTAGTACTTT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
9 26 0.63
10 12 0.29
11 3 0.07
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.58
Consensus pattern (10 bp):
TTTTTATAAA
Found at i:14744560 original size:14 final size:14
Alignment explanation
Indices: 14744541--14744569 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
14744531 TCTACATTAT
14744541 TCTATTTGAGTCTA
1 TCTATTTGAGTCTA
14744555 TCTATTTGAGTCTA
1 TCTATTTGAGTCTA
14744569 T
1 T
14744570 GTTTTGTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.52
Consensus pattern (14 bp):
TCTATTTGAGTCTA
Found at i:14751873 original size:18 final size:19
Alignment explanation
Indices: 14751833--14751873 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
14751823 CAAATTAAAT
14751833 TATT-ACCAGATGAGATTA
1 TATTCACCAGATGAGATTA
*
14751851 -GTTCACCA-ATGAGATTA
1 TATTCACCAGATGAGATTA
14751868 TATTCA
1 TATTCA
14751874 ATGATATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 4
0.76 0.08 0.16
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34
Consensus pattern (19 bp):
TATTCACCAGATGAGATTA
Found at i:14755212 original size:13 final size:13
Alignment explanation
Indices: 14755194--14755231 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
14755184 TTAAAATATA
14755194 TAAAATTATAAAT
1 TAAAATTATAAAT
14755207 TAAAATT-TATAAT
1 TAAAATTATA-AAT
14755220 TAAAA-TATAAAT
1 TAAAATTATAAAT
14755232 AGTATTAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
12 6 0.26
13 17 0.74
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (13 bp):
TAAAATTATAAAT
Found at i:14757848 original size:19 final size:20
Alignment explanation
Indices: 14757821--14757871 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
14757811 GCCAATACAA
*
14757821 TATCAATACTAGACTA-A-AG
1 TATCGATACTAGA-TACATAG
*
14757840 TATCGATACTTGATACCATAG
1 TATCGATACTAGATA-CATAG
14757861 TATCGATACTA
1 TATCGATACTA
14757872 TTGAACTTAT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 2 0.08
19 11 0.42
20 1 0.04
21 12 0.46
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.31
Consensus pattern (20 bp):
TATCGATACTAGATACATAG
Found at i:14758590 original size:22 final size:23
Alignment explanation
Indices: 14758565--14758610 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
14758555 CAACCAAATC
14758565 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
14758587 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
14758610 A
1 A
14758611 CGTCATCACT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:14758616 original size:23 final size:23
Alignment explanation
Indices: 14758572--14758616 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
14758562 ATCAATTCAA
*
14758572 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
14758595 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
14758617 CACTTATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:14758860 original size:253 final size:254
Alignment explanation
Indices: 14758411--14758917 Score: 901
Period size: 253 Copynumber: 2.0 Consensus size: 254
14758401 TTTGTATAAT
*
14758411 TGTAATACCCCTACCCGTATTCATTGCCGGAATAGGGTATGAGGCATTACCGGAGTTTACGAATT
1 TGTAATACCCCTACCCGTATTCATTGCCGGAATAGGGTACGAGGCATTACCGGAGTTTACGAATT
* * *
14758476 AAATTTTTTTTATATTTAATATAGCTCATTTATAAATATCTAACCTTCCTTGCAATATTAAATCG
66 AAATTTTTTTTATATTCAATATAGCCCATTTATAAATATCTAACCTTCCCTGCAATATTAAATCG
14758541 AGACCAATCCACATCAACCAAATCAATTCAACATATTTTCAAGATAAATTCATGCATATTTATAA
131 AGACCAATCCACATCAACCAAATCAATTCAACATATTTTCAAGATAAATTCATGCATATTTATAA
* *
14758606 GATAACGTCATCACTTATCTAAAACCAGGTTTGTTAACCATACTAGTGGCTAACTTTAC
196 GATAACGTCATCACCTATCTAAAACCAGGTTTGTTAACCATACTAATGGCTAACTTTAC
14758665 TGTAATACCCCTACCCGTATTCATTGCCGGAATAGGGTACGAGGCATTACCGGAGTTTACGAATT
1 TGTAATACCCCTACCCGTATTCATTGCCGGAATAGGGTACGAGGCATTACCGGAGTTTACGAATT
*
14758730 AAA-TTTTTTTATATTCAATATAGCCCCTTTATAAATATCTAACCTTCCCTGCAATATTAAATCG
66 AAATTTTTTTTATATTCAATATAGCCCATTTATAAATATCTAACCTTCCCTGCAATATTAAATCG
* *
14758794 AGACCAATCCACATCAACCAAATCAATTCAACATATTTTCATGATAGATTCATGCAT-TTATATA
131 AGACCAATCCACATCAACCAAATCAATTCAACATATTTTCAAGATAAATTCATGCATATT-TATA
*
14758858 AGATAACGTCATCACCTATCTATAACCAGGTTTGTTAACCATACTAATGGCTAACTTTAC
195 AGATAACGTCATCACCTATCTAAAACCAGGTTTGTTAACCATACTAATGGCTAACTTTAC
14758918 ATTCATTTCA
Statistics
Matches: 242, Mismatches: 10, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
252 2 0.01
253 173 0.71
254 67 0.28
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (254 bp):
TGTAATACCCCTACCCGTATTCATTGCCGGAATAGGGTACGAGGCATTACCGGAGTTTACGAATT
AAATTTTTTTTATATTCAATATAGCCCATTTATAAATATCTAACCTTCCCTGCAATATTAAATCG
AGACCAATCCACATCAACCAAATCAATTCAACATATTTTCAAGATAAATTCATGCATATTTATAA
GATAACGTCATCACCTATCTAAAACCAGGTTTGTTAACCATACTAATGGCTAACTTTAC
Found at i:14765247 original size:38 final size:38
Alignment explanation
Indices: 14765217--14765387 Score: 238
Period size: 38 Copynumber: 4.5 Consensus size: 38
14765207 GCAGGCTATA
14765217 TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
1 TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
14765255 TGCTGGTAA-TATATCCGGGTTAAATCCCGCAGGCTTCG
1 TGCTGG-AATTATATCCGGGTTAAATCCCGCAGGCTTCG
*
14765293 TGCTGGTAA-TATATCCGGGTTAATTCCCGCAGGCTTCG
1 TGCTGG-AATTATATCCGGGTTAAATCCCGCAGGCTTCG
* * * * *
14765331 CGCTGGTATTATATCCGGGTTAAGTCCCGCAGGCCTAG
1 TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
* *
14765369 TGCTGGTATTATATTCGGG
1 TGCTGGAATTATATCCGGG
14765388 CCTTTGAGCC
Statistics
Matches: 123, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
37 1 0.01
38 120 0.98
39 2 0.02
ACGTcount: A:0.19, C:0.23, G:0.27, T:0.30
Consensus pattern (38 bp):
TGCTGGAATTATATCCGGGTTAAATCCCGCAGGCTTCG
Found at i:14765522 original size:45 final size:45
Alignment explanation
Indices: 14765380--14765539 Score: 209
Period size: 45 Copynumber: 3.6 Consensus size: 45
14765370 GCTGGTATTA
* *
14765380 TATTCGGGCCTTTGAGCCTAGCAGGCTATTATGCCGGTGAGACAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
*
14765425 TATTCGGGCCTTTGGGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
* *
14765470 TATTCGGG-CTTTCGAGCCTAGCAGGCTATAATGCCGATGAAATGA-
1 TATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGAT-AC
* * *
14765515 TAATCGGGCC-TCGATCCTAGCAGGC
1 TATTCGGGCCTTTGAGCCTAGCAGGC
14765540 AAAATGTAGG
Statistics
Matches: 103, Mismatches: 9, Indels: 7
0.87 0.08 0.06
Matches are distributed among these distances:
44 16 0.16
45 85 0.83
46 2 0.02
ACGTcount: A:0.22, C:0.24, G:0.29, T:0.26
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAC
Found at i:14766960 original size:58 final size:57
Alignment explanation
Indices: 14766889--14767014 Score: 157
Period size: 57 Copynumber: 2.2 Consensus size: 57
14766879 ATAGAAATGG
*
14766889 TGAAAATGAAGAAATAAGAAACATTTTG-AAATGATTATGGTTTTCTCCAAAATGAA-AA
1 TGAAAATGAAGAAAT-AGAAACA-TTTGCAAATGAATATGGTTTTCTCCAAAAT-AATAA
* * * *
14766947 TGAATATGGAGAAATGGAATCATTTGCAAATGAATATGGTTTTCTCCAAAATAATAA
1 TGAAAATGAAGAAATAGAAACATTTGCAAATGAATATGGTTTTCTCCAAAATAATAA
14767004 TGAAAAATGAA
1 TG-AAAATGAA
14767015 AATAATTTCA
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
56 6 0.10
57 33 0.57
58 19 0.33
ACGTcount: A:0.47, C:0.07, G:0.17, T:0.29
Consensus pattern (57 bp):
TGAAAATGAAGAAATAGAAACATTTGCAAATGAATATGGTTTTCTCCAAAATAATAA
Found at i:14771003 original size:49 final size:49
Alignment explanation
Indices: 14770931--14771028 Score: 169
Period size: 49 Copynumber: 2.0 Consensus size: 49
14770921 GGTGTAGTGC
* *
14770931 CTCTCCTTCCAGGTGCGTTTCCTTTCCCTTCTTACACCATCTTCTGTAA
1 CTCTCCTTCCAAGTGCATTTCCTTTCCCTTCTTACACCATCTTCTGTAA
*
14770980 CTCTCCTTCCAAGTGCATTTCCTTTCCCTTCTTAGACCATCTTCTGTAA
1 CTCTCCTTCCAAGTGCATTTCCTTTCCCTTCTTACACCATCTTCTGTAA
14771029 TATTGTGAGC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.14, C:0.36, G:0.09, T:0.41
Consensus pattern (49 bp):
CTCTCCTTCCAAGTGCATTTCCTTTCCCTTCTTACACCATCTTCTGTAA
Found at i:14777740 original size:40 final size:37
Alignment explanation
Indices: 14777678--14777808 Score: 155
Period size: 35 Copynumber: 3.6 Consensus size: 37
14777668 GAAAAGTGTG
*
14777678 AAATGTAGGTATGGTA--TCATCCATATTGAGTTGTA
1 AAATGTAGGTATGGTATTTCATCCATACTGAGTTGTA
*
14777713 AAATGTAGGTATGGTATTATCAAATCCATACTGAGTT-AA
1 AAATGTAGGTATGGTATT-TC--ATCCATACTGAGTTGTA
* *
14777752 GAAATGTAGGTATGGCATTTC--CCATACCGAGTTGTA
1 -AAATGTAGGTATGGTATTTCATCCATACTGAGTTGTA
14777788 AAATGTAGGTATGGTATTTCA
1 AAATGTAGGTATGGTATTTCA
14777809 ATGAGGAAAA
Statistics
Matches: 82, Mismatches: 6, Indels: 15
0.80 0.06 0.15
Matches are distributed among these distances:
35 46 0.56
36 1 0.01
38 2 0.02
39 3 0.04
40 30 0.37
ACGTcount: A:0.33, C:0.11, G:0.22, T:0.34
Consensus pattern (37 bp):
AAATGTAGGTATGGTATTTCATCCATACTGAGTTGTA
Found at i:14786884 original size:62 final size:61
Alignment explanation
Indices: 14786811--14787037 Score: 216
Period size: 62 Copynumber: 3.7 Consensus size: 61
14786801 AAATTCTAAA
* * *
14786811 TTAATAATTATAAAATTATATTCTAACATTAAAATGATAAAAATTTAATTTAATTTAATTTT
1 TTAAAAATTATAAAAATATATT-TAACATTAAAATAATAAAAATTTAATTTAATTTAATTTT
* **
14786873 TTAAAAATTATAAAAATATGATTT---ATTAAAATAAT-AAAATTATAATAATTTATAAAATTTT
1 TTAAAAATTATAAAAATAT-ATTTAACATTAAAATAATAAAAATT-TAAT--TTAATTTAATTTT
* * * * *
14786934 AAATTAATAATAATAAAATTATATTTTAACTTTAAAATAATAATAATTTAATTTAATTTAATTTT
1 ---TTAAAAATTATAAAAATATA-TTTAACATTAAAATAATAAAAATTTAATTTAATTTAATTTT
14786999 TTAAAAATTATAAAAATATAATTT---ATTAAAATAATAAAA
1 TTAAAAATTATAAAAATAT-ATTTAACATTAAAATAATAAAA
14787038 TTATATTTTT
Statistics
Matches: 133, Mismatches: 19, Indels: 29
0.73 0.10 0.16
Matches are distributed among these distances:
58 6 0.05
59 27 0.20
61 10 0.08
62 37 0.28
63 5 0.04
64 19 0.14
65 10 0.08
67 14 0.11
68 5 0.04
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (61 bp):
TTAAAAATTATAAAAATATATTTAACATTAAAATAATAAAAATTTAATTTAATTTAATTTT
Found at i:14786887 original size:8 final size:8
Alignment explanation
Indices: 14786876--14786956 Score: 51
Period size: 8 Copynumber: 10.1 Consensus size: 8
14786866 TAATTTTTTA
14786876 AAAATTAT
1 AAAATTAT
*
14786884 AAAAATAT
1 AAAATTAT
* *
14786892 -GATTTATT
1 AAAATTA-T
*
14786900 AAAATAAT
1 AAAATTAT
14786908 AAAATTAT
1 AAAATTAT
14786916 AATAATTTAT
1 AA-AA-TTAT
14786926 AAAATT-T
1 AAAATTAT
*
14786933 TAAATTA-
1 AAAATTAT
* *
14786940 ATAATAAT
1 AAAATTAT
14786948 AAAATTAT
1 AAAATTAT
14786956 A
1 A
14786957 TTTTAACTTT
Statistics
Matches: 53, Mismatches: 14, Indels: 12
0.67 0.18 0.15
Matches are distributed among these distances:
7 13 0.25
8 27 0.51
9 7 0.13
10 6 0.11
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (8 bp):
AAAATTAT
Found at i:14786930 original size:26 final size:27
Alignment explanation
Indices: 14786893--14786947 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
14786883 TAAAAATATG
14786893 ATTTATTAAAATAATAAAATT-ATAATA
1 ATTTATTAAAAT-ATAAAATTAATAATA
* *
14786920 ATTTA-TAAAATTTTAAATTAATAATA
1 ATTTATTAAAATATAAAATTAATAATA
14786946 AT
1 AT
14786948 AAAATTATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 6 0.24
26 14 0.56
27 5 0.20
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (27 bp):
ATTTATTAAAATATAAAATTAATAATA
Found at i:14786950 original size:126 final size:126
Alignment explanation
Indices: 14786791--14787042 Score: 441
Period size: 126 Copynumber: 2.0 Consensus size: 126
14786781 TAAGTCCTTC
* *
14786791 ATAATTTATAAAATTCTAAATTAATAATTATAAAATTATATTCTAACATTAAAATGATAAAAATT
1 ATAATTTATAAAATTCTAAATTAATAATAATAAAATTATATTCTAACATTAAAATAATAAAAATT
*
14786856 TAATTTAATTTAATTTTTTAAAAATTATAAAAATATGATTTATTAAAATAATAAAATTATA
66 TAATTTAATTTAATTTTTTAAAAATTATAAAAATATAATTTATTAAAATAATAAAATTATA
* * * *
14786917 ATAATTTATAAAATTTTAAATTAATAATAATAAAATTATATTTTAACTTTAAAATAATAATAATT
1 ATAATTTATAAAATTCTAAATTAATAATAATAAAATTATATTCTAACATTAAAATAATAAAAATT
14786982 TAATTTAATTTAATTTTTTAAAAATTATAAAAATATAATTTATTAAAATAATAAAATTATA
66 TAATTTAATTTAATTTTTTAAAAATTATAAAAATATAATTTATTAAAATAATAAAATTATA
14787043 TTTTTATTAT
Statistics
Matches: 119, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
126 119 1.00
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.44
Consensus pattern (126 bp):
ATAATTTATAAAATTCTAAATTAATAATAATAAAATTATATTCTAACATTAAAATAATAAAAATT
TAATTTAATTTAATTTTTTAAAAATTATAAAAATATAATTTATTAAAATAATAAAATTATA
Found at i:14786972 original size:27 final size:27
Alignment explanation
Indices: 14786929--14786995 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 27
14786919 AATTTATAAA
*
14786929 ATTTTAAATTAATAATAATAA-AATTAT
1 ATTTTAATTTAATAATAATAATAATT-T
14786956 ATTTTAACTTTAA-AATAATAATAATTT
1 ATTTTAA-TTTAATAATAATAATAATTT
*
14786983 AATTTAATTTAAT
1 ATTTTAATTTAAT
14786996 TTTTTAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
26 5 0.14
27 22 0.63
28 8 0.23
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (27 bp):
ATTTTAATTTAATAATAATAATAATTT
Found at i:14787020 original size:40 final size:40
Alignment explanation
Indices: 14786852--14787023 Score: 114
Period size: 42 Copynumber: 4.2 Consensus size: 40
14786842 AAATGATAAA
*
14786852 AATTTAATTTAATTTAATTTTTTAAAAATTATAAAAATAT
1 AATTTAATTTAATATAATTTTTTAAAAATTATAAAAATAT
* * ** * * * *
14786892 GATTT-ATTAAAATAATAAAATTATAATAATTTATAAAATTTT
1 AATTTAATT-TAAT-ATAATTTTTTAA-AAATTATAAAAATAT
* * * * **
14786934 AAATTAATAATAATAAAATTATATTTTAACTTTA-AAATAATAAT
1 AATTTAAT-TTAATATAATT-T-TTTAAAAATTATAAA-AAT-AT
*
14786978 AATTTAATTTAATTTAATTTTTTAAAAATTATAAAAATAT
1 AATTTAATTTAATATAATTTTTTAAAAATTATAAAAATAT
14787018 AATTTA
1 AATTTA
14787024 TTAAAATAAT
Statistics
Matches: 94, Mismatches: 28, Indels: 20
0.66 0.20 0.14
Matches are distributed among these distances:
39 3 0.03
40 15 0.16
41 19 0.20
42 25 0.27
43 21 0.22
44 11 0.12
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.47
Consensus pattern (40 bp):
AATTTAATTTAATATAATTTTTTAAAAATTATAAAAATAT
Found at i:14787035 original size:24 final size:24
Alignment explanation
Indices: 14786992--14787072 Score: 72
Period size: 25 Copynumber: 3.3 Consensus size: 24
14786982 TAATTTAATT
* *
14786992 TAATTTTTTAAAAATTATAAAAATA
1 TAATTTATT-AAAATAATAAAAATA
*
14787017 TAATTTATTAAAATAATAAAATTA
1 TAATTTATTAAAATAATAAAAATA
* ** *
14787041 TATTTTTATTATTATAAAAAAAATA
1 TA-ATTTATTAAAATAATAAAAATA
*
14787066 CAATTTA
1 TAATTTA
14787073 ATTTCCGTCC
Statistics
Matches: 45, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
24 19 0.42
25 26 0.58
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.44
Consensus pattern (24 bp):
TAATTTATTAAAATAATAAAAATA
Found at i:14789548 original size:23 final size:23
Alignment explanation
Indices: 14789509--14789568 Score: 77
Period size: 23 Copynumber: 2.6 Consensus size: 23
14789499 TGTTTTCATG
*
14789509 TTAT-TTTATGTAAATATATTCTT
1 TTATATTTAT-TATATATATTCTT
14789532 TTATATTTATTATATATATTCTT
1 TTATATTTATTATATATATTCTT
*
14789555 TTAAATTTACTTAT
1 TTATATTTA-TTAT
14789569 GCATAATTTG
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
23 24 0.73
24 9 0.27
ACGTcount: A:0.32, C:0.05, G:0.02, T:0.62
Consensus pattern (23 bp):
TTATATTTATTATATATATTCTT
Found at i:14791872 original size:22 final size:25
Alignment explanation
Indices: 14791822--14791875 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 25
14791812 ATTAATATTT
14791822 TAAAATTCAAAATATATAAACTTTTAA
1 TAAAATTCAAAATATATAAA--TTTAA
14791849 TAAAATT-AAAATATAT-AA-TTAA
1 TAAAATTCAAAATATATAAATTTAA
14791871 TAAAA
1 TAAAA
14791876 ATATAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 9 0.33
25 2 0.07
26 9 0.33
27 7 0.26
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (25 bp):
TAAAATTCAAAATATATAAATTTAA
Found at i:14792080 original size:19 final size:20
Alignment explanation
Indices: 14792035--14792081 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
14792025 TAATATATTA
*
14792035 CATATAT-TTATATATTTTT
1 CATATATATTATAGATTTTT
*
14792054 CA-AAATATTATAGATTTTT
1 CATATATATTATAGATTTTT
14792073 -ATATATATT
1 CATATATATT
14792082 TAATTGAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.55
Consensus pattern (20 bp):
CATATATATTATAGATTTTT
Found at i:14800337 original size:18 final size:19
Alignment explanation
Indices: 14800293--14800339 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
14800283 CAGAAATTCT
*
14800293 AAAATT-TATATTTTTAAA
1 AAAATTATAAATTTTTAAA
*
14800311 AAAATTATAAATTTTTTAA
1 AAAATTATAAATTTTTAAA
14800330 AAAA-TATAAA
1 AAAATTATAAA
14800340 AATATATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 12 0.46
19 14 0.54
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
AAAATTATAAATTTTTAAA
Found at i:14807331 original size:22 final size:24
Alignment explanation
Indices: 14807304--14807348 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
14807294 AAATAGTAAA
14807304 TTAATT-TTTTT-TATTAAAAATT
1 TTAATTATTTTTATATTAAAAATT
14807326 TTAATTATTTTTACTATTAAAAA
1 TTAATTATTTTTA-TATTAAAAA
14807349 CTTATTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 6 0.30
23 5 0.25
25 9 0.45
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (24 bp):
TTAATTATTTTTATATTAAAAATT
Found at i:14810365 original size:3 final size:3
Alignment explanation
Indices: 14810342--14810480 Score: 76
Period size: 3 Copynumber: 47.0 Consensus size: 3
14810332 AGGGGGAGAA
* * *
14810342 TAT TAT TTT TAA TAT TGT TAT TAT TA- TAT TA- TAT TA- TATT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT
* * * * *
14810385 T-T TAT TAC TGT TAC TAT TAT T-T TAT ATATT TAT TAC CAT TATT TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT -TA-T TAT TAT TAT TA-T TA-T
* * * *
14810432 TAT TAT TAT TAT TAG TAA CA- TAT TAT TAT TTT TAT TAT T-T TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14810478 TAT
1 TAT
14810481 CATGGTACTA
Statistics
Matches: 103, Mismatches: 22, Indels: 22
0.70 0.15 0.15
Matches are distributed among these distances:
2 13 0.13
3 76 0.74
4 13 0.13
5 1 0.01
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:14810413 original size:33 final size:36
Alignment explanation
Indices: 14810348--14810418 Score: 94
Period size: 36 Copynumber: 2.1 Consensus size: 36
14810338 AGAATATTAT
* *
14810348 TTTTAATATTGTTATTATTATATTATATTATATTTA
1 TTTTAATACTGTTACTATTATATTATATTATATTTA
*
14810384 TTTTATTACTGTTACTATTAT-TT-TA-TATATTTA
1 TTTTAATACTGTTACTATTATATTATATTATATTTA
14810417 TT
1 TT
14810419 ACCATTATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
33 10 0.31
34 2 0.06
35 2 0.06
36 18 0.56
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (36 bp):
TTTTAATACTGTTACTATTATATTATATTATATTTA
Found at i:14810442 original size:17 final size:17
Alignment explanation
Indices: 14810368--14810478 Score: 65
Period size: 17 Copynumber: 6.6 Consensus size: 17
14810358 GTTATTATTA
14810368 TATTA-TATTATATTTAT
1 TATTATTATT-TATTTAT
*
14810385 T-TTATTACTGTTA-CTAT
1 TATTATTA-T-TTATTTAT
*
14810402 TATT-TTATATATTTAT
1 TATTATTATTTATTTAT
**
14810418 TACCATTATTTATTTAT
1 TATTATTATTTATTTAT
**
14810435 TATTATTATTAGTAACATAT
1 TATTATTATT--T-ATTTAT
14810455 TATTATT-TTTA-TTAT
1 TATTATTATTTATTTAT
14810470 T-TTATTATT
1 TATTATTATT
14810479 ATCATGGTAC
Statistics
Matches: 73, Mismatches: 11, Indels: 22
0.69 0.10 0.21
Matches are distributed among these distances:
14 5 0.07
15 8 0.11
16 10 0.14
17 30 0.41
18 5 0.07
19 4 0.05
20 11 0.15
ACGTcount: A:0.31, C:0.05, G:0.02, T:0.63
Consensus pattern (17 bp):
TATTATTATTTATTTAT
Found at i:14810445 original size:20 final size:20
Alignment explanation
Indices: 14810344--14810480 Score: 68
Period size: 20 Copynumber: 6.7 Consensus size: 20
14810334 GGGGAGAATA
* *
14810344 TTATTT-TTAATATTGTTA-
1 TTATTTATTATTATTATTAT
14810362 TTATTATATTA-TATTA-TAT
1 TTATT-TATTATTATTATTAT
*
14810381 TTATTTTATTACTGTTACTATTATT
1 TTA-TTTATTA---TTATTATTA-T
* **
14810406 TTATATATTTATTACCATTAT
1 TTATTTA-TTATTATTATTAT
*
14810427 TTATTTATTATTATTATTAG
1 TTATTTATTATTATTATTAT
* ** *
14810447 TAACATATTATTATTTTTA-
1 TTATTTATTATTATTATTAT
14810466 TTATTTTATTATTAT
1 TTA-TTTATTATTAT
14810481 CATGGTACTA
Statistics
Matches: 92, Mismatches: 15, Indels: 22
0.71 0.12 0.17
Matches are distributed among these distances:
18 7 0.08
19 15 0.16
20 39 0.42
21 7 0.08
22 8 0.09
23 4 0.04
24 5 0.05
25 7 0.08
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.64
Consensus pattern (20 bp):
TTATTTATTATTATTATTAT
Found at i:14810816 original size:3 final size:3
Alignment explanation
Indices: 14810803--14810846 Score: 63
Period size: 3 Copynumber: 15.0 Consensus size: 3
14810793 TTTATATTTG
* *
14810803 TTA TGA TTA TTA TTA TTA TTA TTA TTA TTA TTG TT- TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
14810847 CTACTTACAT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
2 2 0.05
3 35 0.95
ACGTcount: A:0.30, C:0.00, G:0.05, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:14814518 original size:65 final size:65
Alignment explanation
Indices: 14814445--14814575 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
14814435 CTCCACAACT
* *
14814445 CTTGAGCCGCTCTACAATCCCAAAGAATATGAATAACATCCTCTCGCACACAACCACAAAGCCGA
1 CTTGAGCCGCTCTACAACCCCAAAGAATATGAATAACATCCTCTCCCACACAACCACAAAGCCGA
14814510 CTTGAGCCGCTCTACAACCCCAAAGAATATGAATAACATCCTCTCCCACACAACCACAAAGCCGA
1 CTTGAGCCGCTCTACAACCCCAAAGAATATGAATAACATCCTCTCCCACACAACCACAAAGCCGA
14814575 C
1 C
14814576 ATGCTTCCGT
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.37, C:0.36, G:0.11, T:0.16
Consensus pattern (65 bp):
CTTGAGCCGCTCTACAACCCCAAAGAATATGAATAACATCCTCTCCCACACAACCACAAAGCCGA
Found at i:14822575 original size:17 final size:17
Alignment explanation
Indices: 14822546--14822578 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
14822536 ATTAGTTGTT
14822546 TTGTTGTTGTTTCATTA
1 TTGTTGTTGTTTCATTA
14822563 TTGTT-TTGCTTTCATT
1 TTGTTGTTG-TTTCATT
14822579 TTATTATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.09, C:0.09, G:0.15, T:0.67
Consensus pattern (17 bp):
TTGTTGTTGTTTCATTA
Found at i:14822584 original size:22 final size:25
Alignment explanation
Indices: 14822559--14822615 Score: 66
Period size: 22 Copynumber: 2.4 Consensus size: 25
14822549 TTGTTGTTTC
14822559 ATTATTGTTTTGCT-TT-CATT-TT
1 ATTATTGTTTTGCTATTACATTATT
* * *
14822581 ATTATTATATTGCTATTATATTATT
1 ATTATTGTTTTGCTATTACATTATT
14822606 ATTATTGTTT
1 ATTATTGTTT
14822616 AGATATTGTA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
22 12 0.44
23 2 0.07
24 3 0.11
25 10 0.37
ACGTcount: A:0.23, C:0.05, G:0.07, T:0.65
Consensus pattern (25 bp):
ATTATTGTTTTGCTATTACATTATT
Found at i:14823536 original size:25 final size:25
Alignment explanation
Indices: 14823508--14823558 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
14823498 ATGATATATC
*
14823508 AAATATACTAA-AAATATTAAAATAA
1 AAATATACTAACAAATA-AAAAATAA
* *
14823533 AAATTTTCTAACAAATAAAAAATAA
1 AAATATACTAACAAATAAAAAATAA
14823558 A
1 A
14823559 TTAAAAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.67, C:0.06, G:0.00, T:0.27
Consensus pattern (25 bp):
AAATATACTAACAAATAAAAAATAA
Found at i:14831723 original size:15 final size:15
Alignment explanation
Indices: 14831679--14831724 Score: 65
Period size: 16 Copynumber: 3.0 Consensus size: 15
14831669 AAACCTAAAT
14831679 AAAATTACAAACCCA
1 AAAATTACAAACCCA
*
14831694 AAATCTTACAAACCCA
1 AAA-ATTACAAACCCA
*
14831710 AAAATTACAGACCCA
1 AAAATTACAAACCCA
14831725 GTAGCCCACA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
15 13 0.48
16 14 0.52
ACGTcount: A:0.54, C:0.28, G:0.02, T:0.15
Consensus pattern (15 bp):
AAAATTACAAACCCA
Found at i:14833583 original size:17 final size:18
Alignment explanation
Indices: 14833533--14833586 Score: 56
Period size: 17 Copynumber: 2.9 Consensus size: 18
14833523 AGGTATCTAA
14833533 CATCTTTATTTTTATTTTAT
1 CATCTTTA--TTTATTTTAT
* * *
14833553 TATTTTTATGTATTTTAT
1 CATCTTTATTTATTTTAT
14833571 CA-CTTTATTTATTTTA
1 CATCTTTATTTATTTTA
14833587 CACCATGGAT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
17 12 0.43
18 10 0.36
20 6 0.21
ACGTcount: A:0.22, C:0.07, G:0.02, T:0.69
Consensus pattern (18 bp):
CATCTTTATTTATTTTAT
Found at i:14836591 original size:49 final size:49
Alignment explanation
Indices: 14836453--14836591 Score: 161
Period size: 49 Copynumber: 2.8 Consensus size: 49
14836443 CTTATTGTGT
* * ** *
14836453 GTCAGTGAAAGACCTGTCTAGGACATGGCATCGACACCGATATATGAGA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATATATGAAA
** * * * * *
14836502 GAAAGTGTAAGATCTATCTGGGACACGGCATCGGCCTTGATATATGAAA
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATATATGAAA
*
14836551 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACTTTGAT
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACATTGAT
14836592 GTACTAGCTA
Statistics
Matches: 71, Mismatches: 19, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.24
Consensus pattern (49 bp):
GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACATTGATATATGAAA
Found at i:14846185 original size:49 final size:48
Alignment explanation
Indices: 14846071--14846283 Score: 165
Period size: 49 Copynumber: 4.5 Consensus size: 48
14846061 ATACAAGCTT
* * * *
14846071 GTGTAAGACCTGTCTGGGACATGG--T-GTCAGCTTATTG-TGT-GTCA
1 GTGTAAGACCTGTCTGGGACATGGCATCGACA-CTGATAGATGTAGCCA
* *
14846115 GTGTAAGACCTAT-AGTGGACATGGCATCGACACTGATAGATGTGAGCCA
1 GTGTAAGACCTGTCTG-GGACATGGCATCGACACTGATAGATGT-AGCCA
* * * * * *
14846164 GTGTAGGACCTGTCTGGGACATGGCAACGA-GCTCGATATATGAAAGTCA
1 GTGTAAGACCTGTCTGGGACATGGCATCGACACT-GATAGATG-TAGCCA
** *
14846213 GTGTAAGACCTGTCTGGGACATGGCATCGACTTTGAT-G-TACTAGCCA
1 GTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGAT-GTAGCCA
14846260 GTGTAAGACCTTGTCTGGGACATG
1 GTGTAAGACC-TGTCTGGGACATG
14846284 ACGTCGGCAT
Statistics
Matches: 134, Mismatches: 22, Indels: 22
0.75 0.12 0.12
Matches are distributed among these distances:
43 1 0.01
44 20 0.15
46 6 0.04
47 21 0.16
48 15 0.11
49 69 0.51
50 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGTAGCCA
Found at i:14849986 original size:19 final size:19
Alignment explanation
Indices: 14849962--14850006 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
14849952 AATGCCTCTT
*
14849962 TTTGCATT-CATTTCATGCA
1 TTTGCATTACATTGCAT-CA
14849981 TTTGCATTACATTGCATCA
1 TTTGCATTACATTGCATCA
*
14850000 TATGCAT
1 TTTGCAT
14850007 GAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.24, C:0.20, G:0.11, T:0.44
Consensus pattern (19 bp):
TTTGCATTACATTGCATCA
Found at i:14858130 original size:44 final size:43
Alignment explanation
Indices: 14858062--14858393 Score: 298
Period size: 44 Copynumber: 7.5 Consensus size: 43
14858052 ATCGTGGGAA
* *
14858062 ATCTTATCTCCCTAAAGTTACAGTGGAGCAGATTGAAGTTATAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TATAG
* *
14858106 ATCTTATCTCCCTAAAGTTGCAGTGGAGTAGATTGAAG-ATAG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTATAG
* * * * *
14858148 CAAACATTATCTCCCTAAAATTGCAGTGGGGCAGGTTGAAGTA-ACG
1 --ATC-TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTATA-G
* * *
14858194 AGTCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTGAAG-ATTGAA
1 A-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTA-T-AG
* * * *
14858239 ATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTATAA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAG-TATAG
* * *
14858283 ACCTTATCCCCCTGAAGTTGCAGTGG-GACAGGTTGAAGT-TACG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAG-CAGATTGAAGTATA-G
* *
14858326 AGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAG-ATAG
1 A-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTATAG
*
14858369 CAATCTTATCTCTCTGAAGTTGCAG
1 --ATCTTATCTCCCTGAAGTTGCAG
14858394 ATAAAGCCAT
Statistics
Matches: 236, Mismatches: 34, Indels: 36
0.77 0.11 0.12
Matches are distributed among these distances:
42 6 0.03
43 5 0.02
44 184 0.78
45 37 0.16
46 4 0.02
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (43 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGTATAG
Found at i:14858187 original size:89 final size:87
Alignment explanation
Indices: 14858059--14858393 Score: 329
Period size: 88 Copynumber: 3.8 Consensus size: 87
14858049 GTCATCGTGG
* *
14858059 GAAATCTTATCTCCCTAAAGTTACAGTGGAGCAGATTGAAGTTATAGATCTTATCTCCCTAAAGT
1 GAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAG-TATAGATCTTATCTCCCTGAAGT
* *
14858124 TGCAGTGGAGTAGATTGAAGATA
65 TGCAGTGGAGCAGACTGAAGATA
* * *
14858147 GCAAA-CATTATCTCCCTAAAATTGCAGTGGGGCAGGTTGAAGTA-ACGAGTCTTATCTCCCTGA
1 G-AAATC-TTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGTATA-GA-TCTTATCTCCCTGA
* *
14858210 AGTTGCAGTGAAGCAGACTGAAGATT
62 AGTTGCAGTGGAGCAGACTGAAGATA
* * * * * * *
14858236 GAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATTAAAGCTATAAACCTTATCCCCCTGAAGT
1 GAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAG-TATAGATCTTATCTCCCTGAAGT
** *
14858301 TGCAGTGG-GACAGGTTGAAGTTA
65 TGCAGTGGAG-CAGACTGAAGATA
* * * * *
14858324 CG-AGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAG-ATAGCAATCTTATCTCTCTGAA
1 -GAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGTATAG--ATCTTATCTCCCTGAA
14858387 GTTGCAG
63 GTTGCAG
14858394 ATAAAGCCAT
Statistics
Matches: 202, Mismatches: 34, Indels: 22
0.78 0.13 0.09
Matches are distributed among these distances:
86 3 0.01
87 2 0.01
88 121 0.60
89 75 0.37
90 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (87 bp):
GAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGTATAGATCTTATCTCCCTGAAGTT
GCAGTGGAGCAGACTGAAGATA
Found at i:14858342 original size:132 final size:131
Alignment explanation
Indices: 14858063--14858535 Score: 536
Period size: 132 Copynumber: 3.6 Consensus size: 131
14858053 TCGTGGGAAA
* * * *
14858063 TCTTATCTCCCTAAAGTTACAGTGGAGCAGATTGAAG-TT-ATAGATCTTATCTCCCTAAAGTTG
1 TCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATTGA-A-ATCTTATCTCTCTGAAGTTG
* * * * * * * *
14858126 CAGTGGAGTAGATTGAAGATAGCAAACATTATCTCCCTAAAATTGCAGTGGGGCAGGTTGAAGTA
64 CAGT-GAGCAGATTAAAGCTA-TAAACCTTATCTCCCTGAAGTTGCAGTGGGGCAGGTTGAAGTT
14858191 ACGAG
127 ACGAG
* *
14858196 TCTTATCTCCCTGAAGTTGCAGTGAAGCAGACTGAAGATTGAAATCTTATCTCTCTGAAGTTGCA
1 TCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATTGAAATCTTATCTCTCTGAAGTTGCA
* *
14858261 GTAGAGCAGATTAAAGCTATAAACCTTATCCCCCTGAAGTTGCAGTGGGACAGGTTGAAGTTACG
66 GT-GAGCAGATTAAAGCTATAAACCTTATCTCCCTGAAGTTGCAGTGGGGCAGGTTGAAGTTACG
14858326 AG
130 AG
** * *
14858328 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTGAAGATAGCAATCTTATCTCTCTGAAG-T---
1 TCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATTGAAATCTTATCTCTCTGAAGTTGCA
* * * *
14858389 -T--GCAGA-TAAAGCCATAAACCTTATCTCCCTGAAGGTGCAGCGGGGCAGGTTGAAGTTACAA
66 GTGAGCAGATTAAAGCTATAAACCTTATCTCCCTGAAGTTGCAGTGGGGCAGGTTGAAGTTACGA
14858450 G
131 G
* * * *
14858451 TCTTATCTCCCTGAATTTACAGTGGAGAAGACTGAAGATAGTG-AATCTTATTTCTCTGAAGTGG
1 TCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGAT--TGAAATCTTATCTCTCTGAAGTTG
*
14858515 CAGTGAAACAGATTAAAGCTA
64 CAGTG-AGCAGATTAAAGCTA
14858536 CAAATTACAA
Statistics
Matches: 291, Mismatches: 36, Indels: 26
0.82 0.10 0.07
Matches are distributed among these distances:
123 85 0.29
124 22 0.08
125 1 0.00
127 1 0.00
129 1 0.00
131 1 0.00
132 101 0.35
133 75 0.26
134 3 0.01
135 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.28
Consensus pattern (131 bp):
TCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGATTGAAATCTTATCTCTCTGAAGTTGCA
GTGAGCAGATTAAAGCTATAAACCTTATCTCCCTGAAGTTGCAGTGGGGCAGGTTGAAGTTACGA
G
Found at i:14869665 original size:37 final size:36
Alignment explanation
Indices: 14869572--14869670 Score: 94
Period size: 37 Copynumber: 2.7 Consensus size: 36
14869562 ATCAACATTC
* * *
14869572 AAAAATAAAATAGTAAATAATAAAATAAAGTAAAATA
1 AAAAAGAAAA-AGTAAATAATAAATTAAAATAAAATA
* *
14869609 AAAAAGAAAAAGAATAATAATAAATTAAAATAAATTA
1 AAAAAGAAAAAGTA-AATAATAAATTAAAATAAAATA
*
14869646 AAGTTAAGAAAAA-TAAATAA-AAATT
1 AA--AAAGAAAAAGTAAATAATAAATT
14869671 GGGTTTCCTC
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
36 8 0.15
37 35 0.67
38 1 0.02
39 8 0.15
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (36 bp):
AAAAAGAAAAAGTAAATAATAAATTAAAATAAAATA
Found at i:14869669 original size:10 final size:10
Alignment explanation
Indices: 14869574--14869669 Score: 50
Period size: 10 Copynumber: 9.0 Consensus size: 10
14869564 CAACATTCAA
14869574 AAATAAAATAGT
1 AAATAAAA-A-T
14869586 AAATAATAAAAT
1 AAAT-A-AAAAT
14869598 AAAGT-AAAAT
1 AAA-TAAAAAT
* *
14869608 AAAAAAGAAAA
1 AAATAA-AAAT
*
14869619 AGAATAATAAT
1 A-AATAAAAAT
*
14869630 AAATTAAAAT
1 AAATAAAAAT
* *
14869640 AAATTAAAGT
1 AAATAAAAAT
* *
14869650 TAAGAAAAAT
1 AAATAAAAAT
14869660 AAATAAAAAT
1 AAATAAAAAT
14869670 TGGGTTTCCT
Statistics
Matches: 64, Mismatches: 14, Indels: 14
0.70 0.15 0.15
Matches are distributed among these distances:
10 39 0.61
11 7 0.11
12 12 0.19
13 3 0.05
14 3 0.05
ACGTcount: A:0.72, C:0.00, G:0.06, T:0.22
Consensus pattern (10 bp):
AAATAAAAAT
Found at i:14881255 original size:43 final size:43
Alignment explanation
Indices: 14881207--14881288 Score: 155
Period size: 43 Copynumber: 1.9 Consensus size: 43
14881197 GATCTATGTG
14881207 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATACGA
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATACGA
*
14881250 GCATCCGAGCTCGTTGAGAGGTCTGAGTTCATTATGGAT
1 GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGAT
14881289 GTATACATGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (43 bp):
GCATCCGAGCTCGTTGAGAGGTCCGAGTTCATTATGGATACGA
Found at i:14884924 original size:46 final size:46
Alignment explanation
Indices: 14884872--14885005 Score: 250
Period size: 46 Copynumber: 2.9 Consensus size: 46
14884862 AGTGTGCTCT
14884872 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
14884918 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
*
14884964 GTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGG
1 CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGG
14885006 TTGAAAGATA
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 85 1.00
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.25
Consensus pattern (46 bp):
CTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:14885004 original size:16 final size:16
Alignment explanation
Indices: 14884983--14885021 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
14884973 AATGTGTAAG
14884983 ACCATGGTTGAAAGAT
1 ACCATGGTTGAAAGAT
14884999 ACCATGGTTGAAAGAT
1 ACCATGGTTGAAAGAT
14885015 ACCATGG
1 ACCATGG
14885022 CAACGTGATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.36, C:0.15, G:0.26, T:0.23
Consensus pattern (16 bp):
ACCATGGTTGAAAGAT
Found at i:14885006 original size:62 final size:62
Alignment explanation
Indices: 14884937--14885067 Score: 244
Period size: 62 Copynumber: 2.1 Consensus size: 62
14884927 AATGTGTAAG
*
14884937 ACCATGGTTGAAAGATACCATGGCAACGTGATATGGAATGTGTAAGACCATGGTTGAAAGAT
1 ACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGAT
*
14884999 ACCATGGTTGAAAGATACCATGGCAACGTGATGTGAAATGTGTAAGACCATGGTTGAAAGAT
1 ACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGAT
14885061 ACCATGG
1 ACCATGG
14885068 AAACGTGATA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 67 1.00
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.24
Consensus pattern (62 bp):
ACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGAT
Found at i:14885049 original size:46 final size:46
Alignment explanation
Indices: 14884999--14885339 Score: 477
Period size: 46 Copynumber: 7.4 Consensus size: 46
14884989 GTTGAAAGAT
* *
14884999 ACCATGGTTGAAAGATACCATGGCAACGTGATGTGAAATGTGTAAG
1 ACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAGTAAG
* *
14885045 ACCATGGTTGAAAGATACCATGGAAACGTGATATGAAATGTGTAAG
1 ACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAGTAAG
*
14885091 ACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGTGTAAG
1 ACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAGTAAG
* *
14885137 ACCATGGTTGAAAGATACCATGGCAACGTGATACGAAATGAATAAG
1 ACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAGTAAG
* *
14885183 ACCATGGTTGAAAGATACCATGGCAACCTGACATGAAATGAGTAAG
1 ACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAGTAAG
* * *** *
14885229 ACCATGGTTGAAAGATACCATGACAACATGACGGGAAAATGAATAAG
1 ACCATGGTTGAAAGATACCATGGCAACGTGATATG-AAATGAGTAAG
* * * *
14885276 ACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAACGAGTAAA
1 ACCATGGTTGAAAGATACCATGGCAACGTGATATG-AAATGAGTAAG
*
14885322 ACCATAGTTGAAAGATAC
1 ACCATGGTTGAAAGATAC
14885340 TATGACATCA
Statistics
Matches: 273, Mismatches: 21, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
46 232 0.85
47 41 0.15
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (46 bp):
ACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAGTAAG
Found at i:14885085 original size:108 final size:108
Alignment explanation
Indices: 14884891--14885113 Score: 410
Period size: 108 Copynumber: 2.1 Consensus size: 108
14884881 AATGTGTAAG
14884891 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACC
1 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACC
* *
14884956 ATGGCAACGTGATATGGAATGTGTAAGACCATGGTTGAAAGAT
66 ATGGAAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGAT
* *
14884999 ACCATGGTTGAAAGATACCATGGCAACGTGATGTGAAATGTGTAAGACCATGGTTGAAAGATACC
1 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACC
14885064 ATGGAAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGAT
66 ATGGAAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGAT
14885107 ACCATGG
1 ACCATGG
14885114 CAACGTGATA
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
108 111 1.00
ACGTcount: A:0.36, C:0.13, G:0.26, T:0.24
Consensus pattern (108 bp):
ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGATACC
ATGGAAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGAT
Found at i:14885170 original size:154 final size:153
Alignment explanation
Indices: 14884881--14885159 Score: 513
Period size: 154 Copynumber: 1.8 Consensus size: 153
14884871 TCTGATATGG
*
14884881 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAGACCATGGTT
1 AATGTGTAAGACCATGGTTGAAAGATACCATGGAAACCTGATATGAAATGTGTAAGACCATGGTT
* *
14884946 GAAAGATACCATGGCAACGTGATATGGAATGTGTAAGACCATGGTTGAAAGATACCATGGTTGAA
66 GAAAGATACCATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG-TCAA
14885011 AGATACCATGGCAACGTGATGTGA
130 AGATACCATGGCAACGTGATGTGA
*
14885035 AATGTGTAAGACCATGGTTGAAAGATACCATGGAAACGTGATATGAAATGTGTAAGACCATGGTT
1 AATGTGTAAGACCATGGTTGAAAGATACCATGGAAACCTGATATGAAATGTGTAAGACCATGGTT
14885100 GAAAGATACCATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
66 GAAAGATACCATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGG
14885160 CAACGTGATA
Statistics
Matches: 122, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
154 122 1.00
ACGTcount: A:0.37, C:0.13, G:0.27, T:0.24
Consensus pattern (153 bp):
AATGTGTAAGACCATGGTTGAAAGATACCATGGAAACCTGATATGAAATGTGTAAGACCATGGTT
GAAAGATACCATGGCAACGTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTCAAA
GATACCATGGCAACGTGATGTGA
Found at i:14898524 original size:27 final size:27
Alignment explanation
Indices: 14898476--14898634 Score: 166
Period size: 27 Copynumber: 5.9 Consensus size: 27
14898466 GCGAGGCTGC
* * *
14898476 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGGCAAAGCCACCAGATA
14898503 CAGATATTGTGGCAAAGCCACCAGA-A
1 CAGATATTGTGGCAAAGCCACCAGATA
*
14898529 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAAAGCCACCAGATA
* *
14898556 CAGATAATCGTGGCATAGCCA-CA-ATAA
1 CAGAT-ATTGTGGCAAAGCCACCAGAT-A
*
14898583 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAAAGCCACCAGATA
*
14898610 CAGATAATTGTGGCATAGCCACCAG
1 CAGAT-ATTGTGGCAAAGCCACCAG
14898635 GACGCTTCCT
Statistics
Matches: 114, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
25 2 0.02
26 12 0.11
27 92 0.81
28 6 0.05
29 2 0.02
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAAAGCCACCAGATA
Found at i:14898569 original size:54 final size:54
Alignment explanation
Indices: 14898494--14898634 Score: 230
Period size: 54 Copynumber: 2.6 Consensus size: 54
14898484 GTGACGAAGT
*
14898494 CACCAGATACAGAT-ATTGTGGCAAAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
* * *
14898548 CACCAGATCAGATAATCGTGGCATAGCCACAATAACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
14898602 CACCAGATCAGATAATTGTGGCATAGCCACCAG
1 CACCAGATCAGATAATTGTGGCATAGCCACCAG
14898635 GACGCTTCCT
Statistics
Matches: 79, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 5 0.06
54 74 0.94
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGAACAGATATATGTGGCAGAGC
Found at i:14898828 original size:28 final size:28
Alignment explanation
Indices: 14898766--14898828 Score: 65
Period size: 28 Copynumber: 2.2 Consensus size: 28
14898756 ATTTTGTACC
*
14898766 TAGGGATATAATAGTAATTTTCCATACAT
1 TAGGG-TATAATAGTAATTTACCATACAT
* * *
14898795 TGGGGTATTATAGTAATTTAGC-TACATT
1 TAGGGTATAATAGTAATTTACCATACA-T
14898823 TAGGGT
1 TAGGGT
14898829 TTTCATGCAT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
27 4 0.14
28 20 0.71
29 4 0.14
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.40
Consensus pattern (28 bp):
TAGGGTATAATAGTAATTTACCATACAT
Found at i:14900265 original size:26 final size:26
Alignment explanation
Indices: 14900234--14900341 Score: 162
Period size: 26 Copynumber: 4.2 Consensus size: 26
14900224 TGAAATGCCC
*
14900234 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
*
14900260 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
14900286 ATCATGGAATATTTGCCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
14900312 ATTATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
14900338 ATCA
1 ATCA
14900342 ATTTGTACCA
Statistics
Matches: 71, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.33
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:14909132 original size:55 final size:55
Alignment explanation
Indices: 14909048--14909183 Score: 148
Period size: 55 Copynumber: 2.5 Consensus size: 55
14909038 TAGCTGTGGG
* * ** * *
14909048 CGAACCTGCCAAAATAACACGGATGTTCGACACGCCCGTGTCTAG-AACCCGTAGC
1 CGAACCTGTCAAACTAACACGGGCGTTCGACACGCCCGTGCCAAGCAA-CCGTAGC
* * * *
14909103 CGAACCTGTCAAACCAACACGGGCGTTCGACACGTCCGTGCCAAGCAACCGTGGT
1 CGAACCTGTCAAACTAACACGGGCGTTCGACACGCCCGTGCCAAGCAACCGTAGC
* *
14909158 CGAACCTGTTAAACTAACATGGGCGT
1 CGAACCTGTCAAACTAACACGGGCGT
14909184 GGGAGAAACG
Statistics
Matches: 67, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
55 65 0.97
56 2 0.03
ACGTcount: A:0.28, C:0.32, G:0.24, T:0.17
Consensus pattern (55 bp):
CGAACCTGTCAAACTAACACGGGCGTTCGACACGCCCGTGCCAAGCAACCGTAGC
Found at i:14923221 original size:45 final size:45
Alignment explanation
Indices: 14923172--14923291 Score: 138
Period size: 45 Copynumber: 2.7 Consensus size: 45
14923162 AATGCTGATG
* *
14923172 TCCCAGACATGGTCTTAC-TCGTAA-CTACATATATCAATGCCAACA
1 TCCCAGACGTGGTCTTACAT-GAAAGC-ACATATATCAATGCCAACA
* * *
14923217 TCCCAGACGTGGTCATACATGAAAGCACATATATCGATGCCAACG
1 TCCCAGACGTGGTCTTACATGAAAGCACATATATCAATGCCAACA
* *
14923262 TCCTAGA-GTGGTCTTACATGAAAACACATA
1 TCCCAGACGTGGTCTTACATGAAAGCACATA
14923292 GCATAGTCCT
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
44 21 0.32
45 42 0.65
46 2 0.03
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (45 bp):
TCCCAGACGTGGTCTTACATGAAAGCACATATATCAATGCCAACA
Found at i:14928198 original size:16 final size:16
Alignment explanation
Indices: 14928177--14928208 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14928167 AGGGACAATA
*
14928177 TGATTGATTATGAATG
1 TGATTGATTATAAATG
14928193 TGATTGATTATAAATG
1 TGATTGATTATAAATG
14928209 ACTTGTATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.22, T:0.44
Consensus pattern (16 bp):
TGATTGATTATAAATG
Found at i:14945104 original size:99 final size:95
Alignment explanation
Indices: 14944916--14945111 Score: 347
Period size: 99 Copynumber: 2.0 Consensus size: 95
14944906 GTACTTTTAG
14944916 TTCCTTTGGGTTCGACAATCTGGTCTTGCTAAAACTATACTACCGATAGGTACACTTGCCTACAT
1 TTCCTTTGGGTTCGACAATCTGGTCTTGCTAAAACTATACTACCGATAGGTACACTTGCCTACAT
14944981 CACGATAATAGTTAGTTCAAGAACGAGTAA
66 CACGATAATAGTTAGTTCAAGAACGAGTAA
*
14945011 TTCCTTTGGGTTCGATAATCTGGTCTTGCTAAAACTATACTACTGTTCGATAGGTACACTTGCCT
1 TTCCTTTGGGTTCGACAATCTGGTCTTGCTAAAACTATACTAC----CGATAGGTACACTTGCCT
14945076 ACATCACGATAATAGTTAGTTCAAGAACGAGTAA
62 ACATCACGATAATAGTTAGTTCAAGAACGAGTAA
14945110 TT
1 TT
14945112 ATAAATATTT
Statistics
Matches: 96, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
95 42 0.44
99 54 0.56
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.33
Consensus pattern (95 bp):
TTCCTTTGGGTTCGACAATCTGGTCTTGCTAAAACTATACTACCGATAGGTACACTTGCCTACAT
CACGATAATAGTTAGTTCAAGAACGAGTAA
Found at i:14949927 original size:43 final size:42
Alignment explanation
Indices: 14949848--14949959 Score: 129
Period size: 43 Copynumber: 2.6 Consensus size: 42
14949838 TAAGATTACG
* *
14949848 TGTAAAACCAT-GTCTGGGATGTGGCATCGATATGAGA-CTTCA
1 TGTAAAACCATAG-CTGGGATATGGCATCGATATGAGATC-CCA
* * *
14949890 TGTAAGACCATAGCTGGGCTATTGGCATCTATATGAGATCCCA
1 TGTAAAACCATAGCTGGGATA-TGGCATCGATATGAGATCCCA
*
14949933 TGTAAAACCATATCTGGGATATGGCAT
1 TGTAAAACCATAGCTGGGATATGGCAT
14949960 TGGTATGGTA
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 22 0.37
43 36 0.61
44 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (42 bp):
TGTAAAACCATAGCTGGGATATGGCATCGATATGAGATCCCA
Found at i:14953474 original size:20 final size:20
Alignment explanation
Indices: 14953444--14953481 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14953434 TAAGAATGAC
14953444 ATTTGAATTTGATTATTTGTT
1 ATTTGAATTTGA-TATTTGTT
14953465 ATTT-AATTTGATATTTG
1 ATTTGAATTTGATATTTG
14953482 AATGGTTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 6 0.35
20 7 0.41
21 4 0.24
ACGTcount: A:0.26, C:0.00, G:0.13, T:0.61
Consensus pattern (20 bp):
ATTTGAATTTGATATTTGTT
Found at i:14954870 original size:32 final size:32
Alignment explanation
Indices: 14954789--14954876 Score: 124
Period size: 32 Copynumber: 2.8 Consensus size: 32
14954779 GTTTTGTTAT
* *
14954789 TTATATATATAATATATATGCATGCATGGGTG
1 TTATATATATAATATATTTGCGTGCATGGGTG
*
14954821 TTATATATA-ATATATATTTACGTGCATGGGTG
1 TTATATATATA-ATATATTTGCGTGCATGGGTG
*
14954853 TTATATGTATAATATATTTGCGTG
1 TTATATATATAATATATTTGCGTG
14954877 GGTCTGTATA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
31 1 0.02
32 47 0.96
33 1 0.02
ACGTcount: A:0.32, C:0.06, G:0.18, T:0.44
Consensus pattern (32 bp):
TTATATATATAATATATTTGCGTGCATGGGTG
Found at i:14965285 original size:31 final size:31
Alignment explanation
Indices: 14965250--14965328 Score: 95
Period size: 31 Copynumber: 2.5 Consensus size: 31
14965240 GTCACTCTTG
*
14965250 TATTAGTAAGTTTACAATTTGGTCAATTAAA
1 TATTAGTAAATTTACAATTTGGTCAATTAAA
* * * * *
14965281 TATTAGTAAAATTATAATTTGGTCACTTGAC
1 TATTAGTAAATTTACAATTTGGTCAATTAAA
*
14965312 TATTAGCAAATTTACAA
1 TATTAGTAAATTTACAA
14965329 GTCATTCTGA
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.39, C:0.09, G:0.11, T:0.41
Consensus pattern (31 bp):
TATTAGTAAATTTACAATTTGGTCAATTAAA
Found at i:14965428 original size:31 final size:31
Alignment explanation
Indices: 14965348--14965431 Score: 132
Period size: 31 Copynumber: 2.7 Consensus size: 31
14965338 AGTGTTATTT
*
14965348 AGTGACCAAATTGTAAACATACTAATAGTTG
1 AGTGACCAAATTGTAAACTTACTAATAGTTG
* * *
14965379 AGTTACCAATTTCTAAACTTACTAATAGTTG
1 AGTGACCAAATTGTAAACTTACTAATAGTTG
14965410 AGTGACCAAATTGTAAACTTAC
1 AGTGACCAAATTGTAAACTTAC
14965432 CCATCCCCAC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.32
Consensus pattern (31 bp):
AGTGACCAAATTGTAAACTTACTAATAGTTG
Found at i:14969197 original size:33 final size:33
Alignment explanation
Indices: 14969160--14969226 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
14969150 TAATCAAAGT
14969160 ATAAAAAACAAAATTATCGGAATGAAAGATAAA
1 ATAAAAAACAAAATTATCGGAATGAAAGATAAA
*
14969193 ATAAAAAACAAAATTATTGGAATGAAAGATAAA
1 ATAAAAAACAAAATTATCGGAATGAAAGATAAA
14969226 A
1 A
14969227 ACATATAATC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.64, C:0.04, G:0.12, T:0.19
Consensus pattern (33 bp):
ATAAAAAACAAAATTATCGGAATGAAAGATAAA
Found at i:14975372 original size:112 final size:114
Alignment explanation
Indices: 14975130--14975376 Score: 283
Period size: 112 Copynumber: 2.2 Consensus size: 114
14975120 ATTGGGTTGG
* * * *
14975130 ATATAATGATAATAATAATATTAAAGTAAAGTAAATAATAATACTATATATAAATATATATATAA
1 ATATAATGATAATATTAATATTAAAGTAAAG-AAAAAACAATACTACATATAAATATATATATAA
* *
14975195 TAGAAATACACACTACTATATAATAATAAATATAGAAATACAAAAAGAAA
65 TAAAAATACACACTAATATATAATAATAAATATAGAAATACAAAAAGAAA
* * *
14975245 ATATAATAAAAATATTAA-ATTAAAGTAATA-AAAAAACAATACTACATATAAATATATATA-CA
1 ATATAATGATAATATTAATATTAAAGTAA-AGAAAAAACAATACTACATATAAATATATATATAA
* * *
14975307 TAAAAATATACACTAATATATAATAATAATAGTAATAGAAA-A-AATAATAAA
65 TAAAAATACACACTAATATATAATAATAA-A-T-ATAGAAATACAAAAAGAAA
14975358 A-AT-ATGAGTAATATTAATA
1 ATATAATGA-TAATATTAATA
14975377 ATATATTAGA
Statistics
Matches: 112, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
111 3 0.03
112 37 0.33
113 37 0.33
114 12 0.11
115 23 0.21
ACGTcount: A:0.61, C:0.05, G:0.04, T:0.30
Consensus pattern (114 bp):
ATATAATGATAATATTAATATTAAAGTAAAGAAAAAACAATACTACATATAAATATATATATAAT
AAAAATACACACTAATATATAATAATAAATATAGAAATACAAAAAGAAA
Done.