Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 62 of 295
Found at i:18423124 original size:20 final size:19
Alignment explanation
Indices: 18423099--18423192 Score: 82
Period size: 20 Copynumber: 4.8 Consensus size: 19
18423089 TATGTAACAA
18423099 AGGCACCGAAGTGCAGATAG
1 AGGCACCGAAGTGCA-ATAG
* *
18423119 AGGCA-CGATTGTGCAATCAA
1 AGGCACCGA-AGTGCAAT-AG
* *
18423139 AGGCACCAAAGTGCAAACAG
1 AGGCACCGAAGTGC-AATAG
* *
18423159 AGACACCGAAGTGTAATAG
1 AGGCACCGAAGTGCAATAG
*
18423178 AGGCATCGAAGTGCA
1 AGGCACCGAAGTGCA
18423193 GACCCATACA
Statistics
Matches: 57, Mismatches: 13, Indels: 9
0.72 0.16 0.11
Matches are distributed among these distances:
19 21 0.37
20 32 0.56
21 4 0.07
ACGTcount: A:0.38, C:0.20, G:0.29, T:0.13
Consensus pattern (19 bp):
AGGCACCGAAGTGCAATAG
Found at i:18423997 original size:18 final size:18
Alignment explanation
Indices: 18423974--18424015 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
18423964 AACCCAAAAT
18423974 AAAAAATAAAAAAAAAGA
1 AAAAAATAAAAAAAAAGA
* *
18423992 AAAAAATGAAGAAAAAGA
1 AAAAAATAAAAAAAAAGA
18424010 AAAAAA
1 AAAAAA
18424016 ACCTAACCTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.86, C:0.00, G:0.10, T:0.05
Consensus pattern (18 bp):
AAAAAATAAAAAAAAAGA
Found at i:18425190 original size:19 final size:19
Alignment explanation
Indices: 18425166--18425203 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
18425156 TTGAGATTGC
*
18425166 CAACCTATTTGCTTGAAAT
1 CAACCTATTTGCCTGAAAT
18425185 CAACCTATTTGCCTGAAAT
1 CAACCTATTTGCCTGAAAT
18425204 TATTCATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (19 bp):
CAACCTATTTGCCTGAAAT
Found at i:18428524 original size:26 final size:26
Alignment explanation
Indices: 18428494--18428552 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
18428484 TTTACCACAA
*
18428494 GTAAAAT-TGTCAAAGTTTTA-TAAGG
1 GTAAAATCT-TCAAAATTTTACTAAGG
18428519 GATAAAATCTTCAAAATTTTACTAAGG
1 G-TAAAATCTTCAAAATTTTACTAAGG
18428546 GTAAAAT
1 GTAAAAT
18428553 AGGCATGAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.03
26 22 0.73
27 7 0.23
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.34
Consensus pattern (26 bp):
GTAAAATCTTCAAAATTTTACTAAGG
Found at i:18438003 original size:17 final size:18
Alignment explanation
Indices: 18437981--18438019 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
18437971 ATCAAAGGAT
18437981 ATAAACTTACT-T-CTAAC
1 ATAAACTTA-TATGCTAAC
18437998 ATAAACTTATATGCTAAC
1 ATAAACTTATATGCTAAC
18438016 ATAA
1 ATAA
18438020 TTCCAACAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 1 0.05
17 10 0.50
18 9 0.45
ACGTcount: A:0.46, C:0.18, G:0.03, T:0.33
Consensus pattern (18 bp):
ATAAACTTATATGCTAAC
Found at i:18439743 original size:16 final size:17
Alignment explanation
Indices: 18439722--18439754 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
18439712 GACCTTAAGT
*
18439722 TTTGATTCC-ATAGCTA
1 TTTGATACCTATAGCTA
18439738 TTTGATACCTATAGCTA
1 TTTGATACCTATAGCTA
18439755 CTAGAACCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.27, C:0.18, G:0.12, T:0.42
Consensus pattern (17 bp):
TTTGATACCTATAGCTA
Found at i:18439879 original size:5 final size:5
Alignment explanation
Indices: 18439869--18439900 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
18439859 TATTCCAACC
18439869 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA AT
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA AT
18439901 TTTATTTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
ATAAA
Found at i:18440199 original size:38 final size:38
Alignment explanation
Indices: 18440148--18440224 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
18440138 TCAACTTGCT
18440148 CGTCTACTCCTTTCGACATCTCAACTGGCACCTTTGAA
1 CGTCTACTCCTTTCGACATCTCAACTGGCACCTTTGAA
18440186 CGTCTACTCCTTTCGACATCTCAACTGGCACCTTTGAA
1 CGTCTACTCCTTTCGACATCTCAACTGGCACCTTTGAA
18440224 C
1 C
18440225 ACTAGCTTGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.21, C:0.35, G:0.13, T:0.31
Consensus pattern (38 bp):
CGTCTACTCCTTTCGACATCTCAACTGGCACCTTTGAA
Found at i:18444485 original size:33 final size:32
Alignment explanation
Indices: 18444425--18444486 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
18444415 TCTTTAAATA
* * **
18444425 AAAAACATAAAATTTTAAAAATTATATTTTTC
1 AAAAACAAAAAATTTGAAAAAAAATATTTTTC
18444457 AAAAACAAAAAATTATGAAAAAAAATATTT
1 AAAAACAAAAAATT-TGAAAAAAAATATTT
18444487 AAAATTCAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
32 13 0.52
33 12 0.48
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (32 bp):
AAAAACAAAAAATTTGAAAAAAAATATTTTTC
Found at i:18448310 original size:26 final size:27
Alignment explanation
Indices: 18448281--18448336 Score: 64
Period size: 26 Copynumber: 2.1 Consensus size: 27
18448271 TTTCCATAGG
*
18448281 ACCAATTTTTGTA-AA-CATTTCATACA
1 ACCAA-TTTTGTATAACCAATTCATACA
*
18448307 ACC-ATTTTGTATAACCAATTCATATA
1 ACCAATTTTGTATAACCAATTCATACA
18448333 ACCA
1 ACCA
18448337 TTAGTCATCT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
24 7 0.28
25 3 0.12
26 15 0.60
ACGTcount: A:0.39, C:0.21, G:0.04, T:0.36
Consensus pattern (27 bp):
ACCAATTTTGTATAACCAATTCATACA
Found at i:18448322 original size:13 final size:13
Alignment explanation
Indices: 18448296--18448338 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
18448286 TTTTTGTAAA
*
18448296 CATTTCATACAAC
1 CATTTCATATAAC
**
18448309 CATTTTGTATAAC
1 CATTTCATATAAC
*
18448322 CAATTCATATAAC
1 CATTTCATATAAC
18448335 CATT
1 CATT
18448339 AGTCATCTGG
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.37, C:0.23, G:0.02, T:0.37
Consensus pattern (13 bp):
CATTTCATATAAC
Found at i:18448337 original size:26 final size:24
Alignment explanation
Indices: 18448287--18448338 Score: 68
Period size: 26 Copynumber: 2.1 Consensus size: 24
18448277 TAGGACCAAT
*
18448287 TTTTGTAAACATTTCATACAACCA
1 TTTTGTAAACAATTCATACAACCA
*
18448311 TTTTGTATAACCAATTCATATAACCA
1 TTTTGTA-AA-CAATTCATACAACCA
18448337 TT
1 TT
18448339 AGTCATCTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 7 0.29
25 2 0.08
26 15 0.62
ACGTcount: A:0.37, C:0.19, G:0.04, T:0.40
Consensus pattern (24 bp):
TTTTGTAAACAATTCATACAACCA
Found at i:18453047 original size:14 final size:14
Alignment explanation
Indices: 18453028--18453099 Score: 64
Period size: 14 Copynumber: 5.4 Consensus size: 14
18453018 TATATAACCA
18453028 TTTCATATATCTAT
1 TTTCATATATCTAT
* *
18453042 TTTCATATAACCGA-
1 TTTCATAT-ATCTAT
*
18453056 -TTCATAAATC-A-
1 TTTCATATATCTAT
18453067 TTTCATATATCTAT
1 TTTCATATATCTAT
18453081 TTTCATATAT-TCAT
1 TTTCATATATCT-AT
18453095 TTTCA
1 TTTCA
18453100 CCCAATGAAC
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
11 1 0.02
12 11 0.23
13 8 0.17
14 25 0.52
15 3 0.06
ACGTcount: A:0.32, C:0.17, G:0.01, T:0.50
Consensus pattern (14 bp):
TTTCATATATCTAT
Found at i:18453076 original size:27 final size:27
Alignment explanation
Indices: 18453011--18453076 Score: 75
Period size: 27 Copynumber: 2.4 Consensus size: 27
18453001 TCCAATGTTC
*
18453011 CATTTCATATATAACCATTTCATATAT
1 CATTTCATATATAACCATTTCATAAAT
18453038 CTATTT--TCATATAACCGA-TTCATAAAT
1 C-ATTTCAT-ATATAACC-ATTTCATAAAT
18453065 CATTTCATATAT
1 CATTTCATATAT
18453077 CTATTTTCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
26 5 0.15
27 22 0.67
28 6 0.18
ACGTcount: A:0.36, C:0.18, G:0.02, T:0.44
Consensus pattern (27 bp):
CATTTCATATATAACCATTTCATAAAT
Found at i:18461134 original size:45 final size:45
Alignment explanation
Indices: 18461066--18461156 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 45
18461056 GAACTATGTG
*
18461066 ATCTGAACTCATTAAGTTGTGGTCTAAGTTCATGATATATATGAC
1 ATCTGAACTCATTAAGTTATGGTCTAAGTTCATGATATATATGAC
* * * * *
18461111 ATCTGAACTCATTGAGTTATGGTCTGAGTTTATGATGTATGTGAC
1 ATCTGAACTCATTAAGTTATGGTCTAAGTTCATGATATATATGAC
18461156 A
1 A
18461157 CATGTTTTGG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (45 bp):
ATCTGAACTCATTAAGTTATGGTCTAAGTTCATGATATATATGAC
Found at i:18463812 original size:6 final size:6
Alignment explanation
Indices: 18463801--18463827 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
18463791 AAAGATAAAA
18463801 GCTGAG GCTGAG GCTGAG GCTGAG GCT
1 GCTGAG GCTGAG GCTGAG GCTGAG GCT
18463828 AGAGATATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.19, G:0.48, T:0.19
Consensus pattern (6 bp):
GCTGAG
Found at i:18468511 original size:46 final size:45
Alignment explanation
Indices: 18468389--18468608 Score: 166
Period size: 46 Copynumber: 4.8 Consensus size: 45
18468379 GTTGTTATGT
* * *
18468389 GAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCACATT-ATGA-A
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATTGG---CATTGA-GAGA
* * *
18468436 -ATGCTAGTGTAATACATATTTGGGACATGCATTGGCATTGAGACGA
1 GA-GCTAGTGTAAGACATGTCTGGGACATGCATTGGCATTGAGA-GA
* * ** * *
18468482 GAGCTTGTGTGAGACATGTCTGGGACATGCATCAGCCTCGAGATGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATTGGCATTGAGA-G-A
*
18468529 -AGCCAGTGTAAGACATGTCTGGGACATGCATTGGC--T-ACGAGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATTGGCATTGA-GAGA
* *
18468571 TGTGCTACTGTAAGACATGTCTGGGACATGCATTGGCA
1 -GAGCTAGTGTAAGACATGTCTGGGACATGCATTGGCA
18468609 CAGATATGTG
Statistics
Matches: 138, Mismatches: 25, Indels: 22
0.75 0.14 0.12
Matches are distributed among these distances:
42 1 0.01
43 2 0.01
44 40 0.29
45 1 0.01
46 65 0.47
47 29 0.21
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATTGGCATTGAGAGA
Found at i:18468618 original size:44 final size:44
Alignment explanation
Indices: 18468493--18468607 Score: 160
Period size: 44 Copynumber: 2.6 Consensus size: 44
18468483 AGCTTGTGTG
* * * *
18468493 AGACATGTCTGGGACATGCATCAGCCT-CGAGATGTAAGCCAGTGTA
1 AGACATGTCTGGGACATGCAT-TGGCTACGAGATGT--GCTACTGTA
18468539 AGACATGTCTGGGACATGCATTGGCTACGAGATGTGCTACTGTA
1 AGACATGTCTGGGACATGCATTGGCTACGAGATGTGCTACTGTA
18468583 AGACATGTCTGGGACATGCATTGGC
1 AGACATGTCTGGGACATGCATTGGC
18468608 ACAGATATGT
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
44 32 0.50
45 3 0.05
46 29 0.45
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (44 bp):
AGACATGTCTGGGACATGCATTGGCTACGAGATGTGCTACTGTA
Found at i:18468625 original size:92 final size:91
Alignment explanation
Indices: 18468396--18468645 Score: 249
Period size: 92 Copynumber: 2.7 Consensus size: 91
18468386 TGTGAGCCAG
* * * * * *
18468396 TGTAAGACATGTCTAGGACATGCATCGGCCACATTATG-AAATGCTAGTGTAATACATATTTGGG
1 TGTAAGACATGTCTGGGACATGCATCGGCCAGA-TATGTGAA-GCCAGTGTAAGACATATCTGGG
**
18468460 ACATGCATTGGCATTGAGACGAGAGCTTG
64 ACATGCATTGGCA-TGAGACGAGAGCTAC
* * * * *
18468489 TGTGAGACATGTCTGGGACATGCATCAGCCTCGAGATGT-AAGCCAGTGTAAGACATGTCTGGGA
1 TGTAAGACATGTCTGGGACATGCATCGGCC-AGATATGTGAAGCCAGTGTAAGACATATCTGGGA
*
18468553 CATGCATTGGC-T-ACGA-GATGTGCTAC
65 CATGCATTGGCATGA-GACGA-GAGCTAC
*
18468579 TGTAAGACATGTCTGGGACATGCATTGGCACAGATATGTGAGAGCCAGTGTAAGACCATATCTGG
1 TGTAAGACATGTCTGGGACATGCATCGGC-CAGATATGTGA-AGCCAGTGTAAGA-CATATCTGG
18468644 GA
63 GA
18468646 TATGGCATCG
Statistics
Matches: 130, Mismatches: 19, Indels: 16
0.79 0.12 0.10
Matches are distributed among these distances:
89 3 0.02
90 39 0.30
91 2 0.02
92 43 0.33
93 42 0.32
94 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (91 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCAGATATGTGAAGCCAGTGTAAGACATATCTGGGAC
ATGCATTGGCATGAGACGAGAGCTAC
Found at i:18468643 original size:139 final size:138
Alignment explanation
Indices: 18468385--18468654 Score: 303
Period size: 139 Copynumber: 1.9 Consensus size: 138
18468375 CACTGTTGTT
* * * *
18468385 ATGTGAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCACATTATGAAATGCTAGTGTAATA
1 ATGTAAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCACATGATG--ATGCTACTGTAAGA
* ** ** * *
18468450 CATATTTGGGACATGCATTGGCATTGAGACGAGAGCTTGTGTGAGACATGTCTGGGACAT-GCAT
64 CATATCTGGGACATGCATTGGCACAGAGACGAGAGCCAGTGTAAGACATATCTGGGACATGGCAT
18468514 CAGCCTCGAG
129 CAGCCTCGAG
* * *
18468524 ATGTAAGCCAGTGTAAGACATGTCTGGGACATGCATTGGCTACGA-GATG-TGCTACTGTAAGAC
1 ATGTAAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCAC-ATGATGATGCTACTGTAAGAC
* * * *
18468587 ATGTCTGGGACATGCATTGGCACAGATATGTGAGAGCCAGTGTAAGACCATATCTGGGATATGGC
65 ATATCTGGGACATGCATTGGCACAGAGA--CGAGAGCCAGTGTAAGA-CATATCTGGGACATGGC
18468652 ATC
127 ATC
18468655 GACATCGATA
Statistics
Matches: 108, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
136 35 0.32
138 13 0.12
139 54 0.50
140 6 0.06
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.26
Consensus pattern (138 bp):
ATGTAAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCACATGATGATGCTACTGTAAGACA
TATCTGGGACATGCATTGGCACAGAGACGAGAGCCAGTGTAAGACATATCTGGGACATGGCATCA
GCCTCGAG
Found at i:18468710 original size:26 final size:26
Alignment explanation
Indices: 18468669--18468721 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
18468659 TCGATATGTG
*
18468669 TAAGATTTCTCAATTATCCTCTGGTA
1 TAAGATTTCCCAATTATCCTCTGGTA
* *
18468695 TAAGATTTCCCGATTATCCTCTTGTA
1 TAAGATTTCCCAATTATCCTCTGGTA
18468721 T
1 T
18468722 TCCAAGTGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.11, T:0.43
Consensus pattern (26 bp):
TAAGATTTCCCAATTATCCTCTGGTA
Found at i:18475902 original size:39 final size:39
Alignment explanation
Indices: 18475719--18475903 Score: 266
Period size: 39 Copynumber: 4.8 Consensus size: 39
18475709 TGAGGTCTGC
* * *
18475719 AGGC-TTTATGCTGGTATTATATCCGAGATAAGTCCTGA
1 AGGCATTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
* *
18475757 AGGCATTTGTGCTGGTGTTATATCCGGGCTAAGTCCCGA
1 AGGCATTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
* * *
18475796 AGGCATTTGTGCTGGTGTTATATCCGGGATAAGTCCCGA
1 AGGCATTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
*
18475835 AGGCATTTATGCTGGTATTATATCCGGGCTAATGTCCCGC
1 AGGCATTTATGCTGGTATTATATCCGGGCTAA-GTCCCGA
18475875 AGGC-TTTATGCTGGTATTATATCCGGGCT
1 AGGCATTTATGCTGGTATTATATCCGGGCT
18475904 TAAAGTCCTG
Statistics
Matches: 135, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
38 4 0.03
39 121 0.90
40 10 0.07
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.33
Consensus pattern (39 bp):
AGGCATTTATGCTGGTATTATATCCGGGCTAAGTCCCGA
Found at i:18476069 original size:18 final size:18
Alignment explanation
Indices: 18476046--18476081 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
18476036 AAGTTGGTCA
18476046 GGTATGTATTATATACTT
1 GGTATGTATTATATACTT
18476064 GGTATGTATTATATACTT
1 GGTATGTATTATATACTT
18476082 TTATATGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.06, G:0.17, T:0.50
Consensus pattern (18 bp):
GGTATGTATTATATACTT
Found at i:18477626 original size:22 final size:22
Alignment explanation
Indices: 18477598--18477641 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
18477588 TATTTTGAGA
18477598 ATGGCATGTATAGGGACTTGGT
1 ATGGCATGTATAGGGACTTGGT
18477620 ATGGCATGTATAGGGACTTGGT
1 ATGGCATGTATAGGGACTTGGT
18477642 CTTTTTGTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.09, G:0.36, T:0.32
Consensus pattern (22 bp):
ATGGCATGTATAGGGACTTGGT
Found at i:18480491 original size:8 final size:8
Alignment explanation
Indices: 18480449--18480473 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
18480439 ATATAGACTG
18480449 AATAAAAT
1 AATAAAAT
18480457 AATAAAAT
1 AATAAAAT
18480465 AATAAAAT
1 AATAAAAT
18480473 A
1 A
18480474 TCTTATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:18480782 original size:30 final size:31
Alignment explanation
Indices: 18480727--18480785 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
18480717 CACCCTTAAA
* * *
18480727 ATATTTGCACTATTAGTCCTTCAAATTTTTC
1 ATATTTACACTATTAATCCCTCAAATTTTTC
18480758 ATATTTACACT-TTAATCCCTCAAATTTT
1 ATATTTACACTATTAATCCCTCAAATTTT
18480786 AAGTCTTTAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.29, C:0.20, G:0.03, T:0.47
Consensus pattern (31 bp):
ATATTTACACTATTAATCCCTCAAATTTTTC
Found at i:18483769 original size:26 final size:26
Alignment explanation
Indices: 18483736--18483791 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
18483726 CCTAGCCTCT
18483736 TTTTCAATAAACTAGGGCATAAGCCC
1 TTTTCAATAAACTAGGGCATAAGCCC
*
18483762 TTTTCAATAAACTGGGGCATAAGCCC
1 TTTTCAATAAACTAGGGCATAAGCCC
18483788 TTTT
1 TTTT
18483792 GCACTTCCTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32
Consensus pattern (26 bp):
TTTTCAATAAACTAGGGCATAAGCCC
Found at i:18483903 original size:16 final size:17
Alignment explanation
Indices: 18483870--18483905 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
18483860 TATCATGTGC
18483870 ATATCATATCAACCACGT
1 ATATCATATC-ACCACGT
18483888 ATATCATATC-CCACGT
1 ATATCATATCACCACGT
18483904 AT
1 AT
18483906 CAAATTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.44
18 10 0.56
ACGTcount: A:0.36, C:0.28, G:0.06, T:0.31
Consensus pattern (17 bp):
ATATCATATCACCACGT
Found at i:18498443 original size:48 final size:48
Alignment explanation
Indices: 18498368--18498595 Score: 227
Period size: 48 Copynumber: 4.9 Consensus size: 48
18498358 CACATGGTAG
* * * * *
18498368 GATGCCAATGCCATATCCCAGATATGGTCTTACATGGGATCACATTTT
1 GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATC
* ** *
18498416 GATGCCAATGCCATGTCCTAGACATGGTCTTGCATGGGATCGTAGATC
1 GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATC
18498464 GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATC
1 GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATC
* * ** * *
18498512 GATGCCGAT---A-G--CTCAG-CTATGGTCTTACACGAAATTACATATT
1 GATGCCAATGCCATGTCCT-AGAC-ATGGTCTTACATGGGATCACATATC
* * *
18498555 GATGCCAAAGCCATGTCCCAGACATGGTCTTACATTGGATC
1 GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATC
18498596 GCACATAACC
Statistics
Matches: 144, Mismatches: 27, Indels: 18
0.76 0.14 0.10
Matches are distributed among these distances:
42 3 0.02
43 29 0.20
44 1 0.01
45 1 0.01
46 1 0.01
47 1 0.01
48 106 0.74
49 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (48 bp):
GATGCCAATGCCATGTCCTAGACATGGTCTTACATGGGATCACATATC
Found at i:18503577 original size:41 final size:40
Alignment explanation
Indices: 18503444--18503667 Score: 281
Period size: 40 Copynumber: 5.6 Consensus size: 40
18503434 AACCCAAGTA
* * * *
18503444 CCTTCGGGATTTA-ACCGGATATAG-CAAATCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
* *
18503483 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
18503523 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCAC-AAATG
* ** *
18503564 CCTTCGGGTCTTAGCCAAGATATCGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* * *
18503604 CCTCCGGGACTTAACCCGGATATAGCCACTAGCACAAAGTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA-TG
*
18503645 CCTTCGGGTCTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
18503668 CATCCGAATA
Statistics
Matches: 161, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
39 12 0.07
40 91 0.57
41 58 0.36
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:18503668 original size:81 final size:80
Alignment explanation
Indices: 18503448--18503668 Score: 300
Period size: 81 Copynumber: 2.8 Consensus size: 80
18503438 CAAGTACCTT
* * * * * *
18503448 CGGGATTTAA-CCGGATATAGCAAATCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAAC
1 CGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATCGTAAC
* *
18503512 TCGCACAAATGCCTT
66 TAGCACAAATGCCTC
* * ** *
18503527 CGGGACTTAGCCCGGATATAGTCACTAGCACAAAATGCCTTCGGGTCTTAGCCAAGATATCGTCA
1 CGGGACTTAACCCGGATATAGCCACTAGCAC-AAATGCCTTCGGGTCTTAGCCCGGATATCGTAA
18503592 CTAGCACAAATGCCTC
65 CTAGCACAAATGCCTC
18503608 CGGGACTTAACCCGGATATAGCCACTAGCACAAAGTGCCTTCGGGTCTTAGCCCGGATATC
1 CGGGACTTAACCCGGATATAGCCACTAGCACAAA-TGCCTTCGGGTCTTAGCCCGGATATC
18503669 ATCCGAATAA
Statistics
Matches: 122, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
79 8 0.07
80 19 0.16
81 95 0.78
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (80 bp):
CGGGACTTAACCCGGATATAGCCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATCGTAAC
TAGCACAAATGCCTC
Found at i:18505081 original size:14 final size:14
Alignment explanation
Indices: 18505059--18505101 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
18505049 TTTCATTTTG
18505059 TAACATAAAATTAT
1 TAACATAAAATTAT
*
18505073 TAGCATAAAA-TAT
1 TAACATAAAATTAT
* *
18505086 TAACACAAAATAAT
1 TAACATAAAATTAT
18505100 TA
1 TA
18505102 TAATATGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.30
Consensus pattern (14 bp):
TAACATAAAATTAT
Found at i:18505095 original size:13 final size:13
Alignment explanation
Indices: 18505059--18505097 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
18505049 TTTCATTTTG
18505059 TAACATAAAATTAT
1 TAACATAAAA-TAT
*
18505073 TAGCATAAAATAT
1 TAACATAAAATAT
*
18505086 TAACACAAAATA
1 TAACATAAAATA
18505098 ATTATAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 13 0.59
14 9 0.41
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.28
Consensus pattern (13 bp):
TAACATAAAATAT
Found at i:18512907 original size:34 final size:34
Alignment explanation
Indices: 18512866--18512951 Score: 102
Period size: 34 Copynumber: 2.5 Consensus size: 34
18512856 AATTACTCTT
**
18512866 GCCACAACACCTGAACTTCTT-TACCAATCATCCC
1 GCCACAACACCAAAACTTCTTCTACCAATCAT-CC
* *
18512900 GCCACAACGCCAAAACTTCTTCTATCAATCATCC
1 GCCACAACACCAAAACTTCTTCTACCAATCATCC
* *
18512934 ACCACAACACCAATACTT
1 GCCACAACACCAAAACTT
18512952 TTTCAATTAA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
34 35 0.80
35 9 0.20
ACGTcount: A:0.34, C:0.40, G:0.05, T:0.22
Consensus pattern (34 bp):
GCCACAACACCAAAACTTCTTCTACCAATCATCC
Found at i:18515620 original size:26 final size:26
Alignment explanation
Indices: 18515567--18515620 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
18515557 ATTTTTTAGA
**
18515567 AATTTTACCAGGCGTAAAATTATTAT
1 AATTTTACCAGGCGTAAAATTAGAAT
* *
18515593 AATTTTACTAGGGGTAAAATTAGAAT
1 AATTTTACCAGGCGTAAAATTAGAAT
18515619 AA
1 AA
18515621 GAAAATTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.15, T:0.35
Consensus pattern (26 bp):
AATTTTACCAGGCGTAAAATTAGAAT
Found at i:18542482 original size:21 final size:21
Alignment explanation
Indices: 18542458--18542500 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
18542448 TTACCAATTA
18542458 AATGTGTTTCTAACGAATTTT
1 AATGTGTTTCTAACGAATTTT
18542479 AATGTGTTTCTAACGAATTTT
1 AATGTGTTTCTAACGAATTTT
18542500 A
1 A
18542501 CCCGTTACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.09, G:0.14, T:0.47
Consensus pattern (21 bp):
AATGTGTTTCTAACGAATTTT
Found at i:18545127 original size:26 final size:26
Alignment explanation
Indices: 18545098--18545151 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
18545088 TATAGCTCTC
18545098 TAATATGATATAAATCATGTGAAAAG
1 TAATATGATATAAATCATGTGAAAAG
* **
18545124 TAATATGATGTAAATTGTGTGAAAAG
1 TAATATGATATAAATCATGTGAAAAG
18545150 TA
1 TA
18545152 GCTAGATGCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.46, C:0.02, G:0.19, T:0.33
Consensus pattern (26 bp):
TAATATGATATAAATCATGTGAAAAG
Found at i:18550445 original size:21 final size:21
Alignment explanation
Indices: 18550421--18550470 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
18550411 AGCATTTTGA
18550421 TACATTTTATTTAAATCATTG
1 TACATTTTATTTAAATCATTG
*
18550442 TACATTTTCTTTAAATCATTG
1 TACATTTTATTTAAATCATTG
18550463 TACATTTT
1 TACATTTT
18550471 GGTATTTCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.30, C:0.12, G:0.04, T:0.54
Consensus pattern (21 bp):
TACATTTTATTTAAATCATTG
Found at i:18563719 original size:43 final size:44
Alignment explanation
Indices: 18563617--18563719 Score: 124
Period size: 43 Copynumber: 2.4 Consensus size: 44
18563607 GTCTCAGATG
18563617 TGGTCTTACATGT-AATCAAATATTGATGCCACTATCCCAGACA
1 TGGTCTTACATGTAAATCAAATATTGATGCCACTATCCCAGACA
* * * *
18563660 GGGTCTTACACG-AAATCAAATA-TGATGTCGA-TGTCCCAGACA
1 TGGTCTTACATGTAAATCAAATATTGATG-CCACTATCCCAGACA
*
18563702 TGGTTTTACATGTAAATC
1 TGGTCTTACATGTAAATC
18563720 GTAAGTCGAT
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
42 24 0.48
43 26 0.52
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.30
Consensus pattern (44 bp):
TGGTCTTACATGTAAATCAAATATTGATGCCACTATCCCAGACA
Found at i:18567308 original size:42 final size:44
Alignment explanation
Indices: 18567237--18567327 Score: 118
Period size: 42 Copynumber: 2.1 Consensus size: 44
18567227 TCTTATATGT
* *
18567237 AATCAAATATTGATGCCACTGTCCTAGAC-AGCGTCTTACACG-A
1 AATCAAATATCGATGCCACTGTCCCAGACAAG-GTCTTACACGTA
18567280 AATCAAATA-CGATGCCGA-TGTCCCAGACAAGGTCTTACACGTA
1 AATCAAATATCGATGCC-ACTGTCCCAGACAAGGTCTTACACGTA
18567323 AATCA
1 AATCA
18567328 TAAGTTGATG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
42 25 0.58
43 18 0.42
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.23
Consensus pattern (44 bp):
AATCAAATATCGATGCCACTGTCCCAGACAAGGTCTTACACGTA
Found at i:18571788 original size:26 final size:26
Alignment explanation
Indices: 18571752--18571869 Score: 118
Period size: 25 Copynumber: 4.6 Consensus size: 26
18571742 TCGGGTTGCA
*
18571752 AAGGCTTTCCAAATAACTTCGCCACT
1 AAGGCTTTCCAGATAACTTCGCCACT
*
18571778 AAGGCTTTCCAAATAA-TAT-GCCAC-
1 AAGGCTTTCCAGATAACT-TCGCCACT
* * *
18571802 ATAGGCTTTTCAGATAAC-TCACCACA
1 A-AGGCTTTCCAGATAACTTCGCCACT
* *
18571828 AAGGCTTTCCAGATAACTTTGTCACT
1 AAGGCTTTCCAGATAACTTCGCCACT
*
18571854 AAGGCTTCCCAGATAA
1 AAGGCTTTCCAGATAA
18571870 TAAGCCACAT
Statistics
Matches: 77, Mismatches: 9, Indels: 12
0.79 0.09 0.12
Matches are distributed among these distances:
24 2 0.03
25 38 0.49
26 37 0.48
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.27
Consensus pattern (26 bp):
AAGGCTTTCCAGATAACTTCGCCACT
Found at i:18571877 original size:76 final size:76
Alignment explanation
Indices: 18571750--18571898 Score: 219
Period size: 76 Copynumber: 2.0 Consensus size: 76
18571740 ACTCGGGTTG
* * *
18571750 CAAAGGCTTTCCAAATAACTTCGCCACTAAGGCTTTCCAAATAATATGCCACATAG-GCTTTTCA
1 CAAAGGCTTTCCAAATAACTTCGCCACTAAGGCTTCCCAAATAATAAGCCACATAGACCTTTT-A
18571814 GATAACTCACCA
65 GATAACTCACCA
* * * *
18571826 CAAAGGCTTTCCAGATAACTTTGTCACTAAGGCTTCCCAGATAATAAGCCACATAGACCTTTTAG
1 CAAAGGCTTTCCAAATAACTTCGCCACTAAGGCTTCCCAAATAATAAGCCACATAGACCTTTTAG
18571891 ATAACTCA
66 ATAACTCA
18571899 GAATTAAGGC
Statistics
Matches: 65, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
76 60 0.92
77 5 0.08
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.27
Consensus pattern (76 bp):
CAAAGGCTTTCCAAATAACTTCGCCACTAAGGCTTCCCAAATAATAAGCCACATAGACCTTTTAG
ATAACTCACCA
Found at i:18571878 original size:51 final size:51
Alignment explanation
Indices: 18571753--18571878 Score: 114
Period size: 51 Copynumber: 2.5 Consensus size: 51
18571743 CGGGTTGCAA
* * ** *
18571753 AGGCTTTCCAAATAACTTCGCCACTAAGGCTTTCCAAATAATATGCCACAT
1 AGGCTTCCCAGATAACTAAGCCACAAAGGCTTTCCAAATAATATGCCACAT
** * * * *
18571804 AGGCTTTTCAGATAACTCA-CCACAAAGGCTTTCCAGATAACTTTGTCAC-T
1 AGGCTTCCCAGATAACTAAGCCACAAAGGCTTTCCAAATAA-TATGCCACAT
18571854 AAGGCTTCCCAGATAA-TAAGCCACA
1 -AGGCTTCCCAGATAACTAAGCCACA
18571879 TAGACCTTTT
Statistics
Matches: 61, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
50 22 0.36
51 39 0.64
ACGTcount: A:0.33, C:0.27, G:0.13, T:0.26
Consensus pattern (51 bp):
AGGCTTCCCAGATAACTAAGCCACAAAGGCTTTCCAAATAATATGCCACAT
Found at i:18586181 original size:18 final size:19
Alignment explanation
Indices: 18586158--18586196 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
18586148 TGAATTAAAG
*
18586158 TTTATAATTTTTTAA-AAT
1 TTTATAAATTTTTAATAAT
18586176 TTTATAAATTTTTAATAAT
1 TTTATAAATTTTTAATAAT
18586195 TT
1 TT
18586197 ATTTAATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTATAAATTTTTAATAAT
Found at i:18589587 original size:27 final size:30
Alignment explanation
Indices: 18589526--18589588 Score: 87
Period size: 27 Copynumber: 2.2 Consensus size: 30
18589516 AAGTCAAAAG
18589526 TATTTTTTATATTTAAATATTTAATATTAT
1 TATTTTTTATATTTAAATATTTAATATTAT
* *
18589556 AATTTTTTA-ATTT-AA-ATTTAATATTTT
1 TATTTTTTATATTTAAATATTTAATATTAT
18589583 TATTTT
1 TATTTT
18589589 AAATAAACCT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
27 16 0.53
28 2 0.07
29 4 0.13
30 8 0.27
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (30 bp):
TATTTTTTATATTTAAATATTTAATATTAT
Found at i:18589965 original size:14 final size:15
Alignment explanation
Indices: 18589910--18589968 Score: 52
Period size: 15 Copynumber: 4.0 Consensus size: 15
18589900 TTAATGTGCT
18589910 TATTT-TATTTATTTA
1 TATTTATATTT-TTTA
* *
18589925 TA-ATATAATTATTTA
1 TATTTAT-ATTTTTTA
18589940 TATTTATATTTTTTA
1 TATTTATATTTTTTA
*
18589955 T-TTTTTATTTTTTA
1 TATTTATATTTTTTA
18589969 AAAATATTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
14 13 0.36
15 17 0.47
16 6 0.17
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TATTTATATTTTTTA
Found at i:18592944 original size:6 final size:6
Alignment explanation
Indices: 18592937--18592990 Score: 81
Period size: 6 Copynumber: 9.0 Consensus size: 6
18592927 TCCAAGTTTC
* * *
18592937 CATTTC CATTTT CATTTT CATTTT CATTTT CATTTT CATTTC CATTTC
1 CATTTT CATTTT CATTTT CATTTT CATTTT CATTTT CATTTT CATTTT
18592985 CATTTT
1 CATTTT
18592991 TGGAAACCTA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.17, C:0.22, G:0.00, T:0.61
Consensus pattern (6 bp):
CATTTT
Found at i:18592964 original size:18 final size:18
Alignment explanation
Indices: 18592937--18592990 Score: 90
Period size: 18 Copynumber: 3.0 Consensus size: 18
18592927 TCCAAGTTTC
18592937 CATTTCCATTTTCATTTT
1 CATTTCCATTTTCATTTT
*
18592955 CATTTTCATTTTCATTTT
1 CATTTCCATTTTCATTTT
*
18592973 CATTTCCATTTCCATTTT
1 CATTTCCATTTTCATTTT
18592991 TGGAAACCTA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.17, C:0.22, G:0.00, T:0.61
Consensus pattern (18 bp):
CATTTCCATTTTCATTTT
Found at i:18597301 original size:48 final size:48
Alignment explanation
Indices: 18597232--18597363 Score: 142
Period size: 49 Copynumber: 2.7 Consensus size: 48
18597222 ATGGATGTGT
* * * * *
18597232 GCTAGTATAAGACATGTCTGGGATATGCATCGAC-CTCGAGATATGCA-A
1 GCTAGTGTAAGACCTGTCTGGGACATGCATCGACACT-AAGAGATG-AGA
* *
18597280 GCTAGTGTAAGACCTGCCTGGGACATGGCATCGACACTAATAGATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACAT-GCATCGACACTAAGAGATGAGA
*
18597329 GTTAGTGTAAGACCTGTCTGGGACATGACATCGAC
1 GCTAGTGTAAGACCTGTCTGGGACATG-CATCGAC
18597364 TTATATGTGT
Statistics
Matches: 71, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
48 24 0.34
49 45 0.63
50 2 0.03
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACCTGTCTGGGACATGCATCGACACTAAGAGATGAGA
Found at i:18601246 original size:15 final size:15
Alignment explanation
Indices: 18601219--18601262 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
18601209 TATAGTATCA
18601219 TATCTTGGGATTTCTC
1 TATCTT-GGATTTCTC
*
18601235 TATCTTGGATTTCTT
1 TATCTTGGATTTCTC
*
18601250 TA-CTTGGTTTTCT
1 TATCTTGGATTTCT
18601263 TGTTATCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
14 10 0.38
15 10 0.38
16 6 0.23
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:18601444 original size:26 final size:26
Alignment explanation
Indices: 18601414--18601463 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
18601404 TACGTGTAAG
*
18601414 GATTTGACATCGGCAAAGGAATAAAA
1 GATTTGACATAGGCAAAGGAATAAAA
18601440 GATTTGACATAGGCAAAGGAATAA
1 GATTTGACATAGGCAAAGGAATAA
18601464 GTGGTGAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.46, C:0.10, G:0.24, T:0.20
Consensus pattern (26 bp):
GATTTGACATAGGCAAAGGAATAAAA
Found at i:18612376 original size:10 final size:10
Alignment explanation
Indices: 18612363--18612392 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
18612353 CTAAGAACTC
18612363 TTGAAGGGAG
1 TTGAAGGGAG
18612373 TTGAAGGGAG
1 TTGAAGGGAG
18612383 TTGAAGGGAG
1 TTGAAGGGAG
18612393 ATCTTCAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.30, C:0.00, G:0.50, T:0.20
Consensus pattern (10 bp):
TTGAAGGGAG
Found at i:18614936 original size:255 final size:255
Alignment explanation
Indices: 18614486--18615138 Score: 1164
Period size: 255 Copynumber: 2.6 Consensus size: 255
18614476 AAATGGAGTA
*
18614486 ATTAGCTGAAATTGCATTCGAGGTAAGTCCGTGTGACTAAATATCCATGTGATTGTTAATATACT
1 ATTAGCTGAAATTGCATTCGAGGTAAGTCCGTGTGACTAAATATGCATGTGATTGTTAATATACT
*
18614551 TGAAATCTATCTTGATTTAGTTATATTGAA-TATATGTTGATGATATTGAGTATGATGAAAGTGA
66 TGAAATCTATCTTGCTTTAGTTATATTGAATTATATGTTGATGATATTGAGTATGATGAAAGTGA
18614615 TGCCAAACGTTAATAATATTCATGTGATGATAGAATACATTAGAAATTTGATGGAATATGATATC
131 TGCCAAACGTTAATAATATTCATGTGATGATAGAATACATTAGAAATTTGATGGAATATGATATC
* **
18614680 CCATTGAAACGAGTAAGTTGTATGTAAATAATGCAACTTAGTCGTATTTATACATTGAAT
196 CCATAGAAACGAGTAAGTTGTACATAAATAATGCAACTTAGTCGTATTTATACATTGAAT
*
18614740 ATTAGCTGAAATTGCATTCGAGGTAAGTCTGTGTGACTAAATATGCATGTGATTGTTAATATACT
1 ATTAGCTGAAATTGCATTCGAGGTAAGTCCGTGTGACTAAATATGCATGTGATTGTTAATATACT
*
18614805 TGAAATCTATCTTGCTTTGGTTATATTGAATTATATGTTGATGATATTGAGTATGATGAAAGTGA
66 TGAAATCTATCTTGCTTTAGTTATATTGAATTATATGTTGATGATATTGAGTATGATGAAAGTGA
*
18614870 TGCCAAACGTTAATAATATTTATGTGATGATAGAATACATTAGAAATTTGATGGAATATGATATC
131 TGCCAAACGTTAATAATATTCATGTGATGATAGAATACATTAGAAATTTGATGGAATATGATATC
*
18614935 CCATAGAAACGAGTAAGTTGTACATAAATAATGCAACTTAGTTGTATTTATACATTGAAT
196 CCATAGAAACGAGTAAGTTGTACATAAATAATGCAACTTAGTCGTATTTATACATTGAAT
* ** *
18614995 GTTAGCCAAAATTGCATTCGAGGTAAGTCCGTGTGACTAGATATGCATGTGATTGTTAATATACT
1 ATTAGCTGAAATTGCATTCGAGGTAAGTCCGTGTGACTAAATATGCATGTGATTGTTAATATACT
*
18615060 TGAAACCTATCTTGCTTTAGTTATATTGAATTATATGTTGATGATATTGAGTATGATGAAAGTGA
66 TGAAATCTATCTTGCTTTAGTTATATTGAATTATATGTTGATGATATTGAGTATGATGAAAGTGA
*
18615125 TGCCAAACATTAAT
131 TGCCAAACGTTAAT
18615139 TGTAATACCC
Statistics
Matches: 381, Mismatches: 17, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
254 91 0.24
255 290 0.76
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.37
Consensus pattern (255 bp):
ATTAGCTGAAATTGCATTCGAGGTAAGTCCGTGTGACTAAATATGCATGTGATTGTTAATATACT
TGAAATCTATCTTGCTTTAGTTATATTGAATTATATGTTGATGATATTGAGTATGATGAAAGTGA
TGCCAAACGTTAATAATATTCATGTGATGATAGAATACATTAGAAATTTGATGGAATATGATATC
CCATAGAAACGAGTAAGTTGTACATAAATAATGCAACTTAGTCGTATTTATACATTGAAT
Found at i:18615321 original size:22 final size:23
Alignment explanation
Indices: 18615296--18615341 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
18615286 CAACCAAATC
18615296 AATTCA-ACATATTT-TGAAGATA
1 AATTCATACATATTTAT-AAGATA
*
18615318 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
18615341 A
1 A
18615342 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:18615347 original size:23 final size:23
Alignment explanation
Indices: 18615303--18615347 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
18615293 ATCAATTCAA
*
18615303 CATATTTTGAAGATAAATTCATG
1 CATATTTTGAAGATAAAGTCATG
*
18615326 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TGAAGATAAAGTCAT
18615348 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.38
Consensus pattern (23 bp):
CATATTTTGAAGATAAAGTCATG
Found at i:18616708 original size:32 final size:32
Alignment explanation
Indices: 18616667--18616728 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
18616657 TCTCTATTTT
18616667 CATTGTTCAACTCTTTGACAACACGAAAAATC
1 CATTGTTCAACTCTTTGACAACACGAAAAATC
*
18616699 CATTGTTCAACTCTTTGACAACATGAAAAA
1 CATTGTTCAACTCTTTGACAACACGAAAAA
18616729 ACCAAAAGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.29
Consensus pattern (32 bp):
CATTGTTCAACTCTTTGACAACACGAAAAATC
Found at i:18624443 original size:48 final size:48
Alignment explanation
Indices: 18624352--18624567 Score: 171
Period size: 47 Copynumber: 4.6 Consensus size: 48
18624342 GATGTGTGCT
* ** *
18624352 AGTGTAAGACC-TGTCTGGGACAT-GCATCGGCCACATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACAAGACGAGAGCC
* * *
18624398 AGTGTAAGACCATGTCTGGAACATGGCATCGGCAATAAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACAAGACGAGAGCC
* ** ****
18624446 AGTGTAAGA-CATGTCTGGGACACGGCATCGG---CTTGAC-ATGTTTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACAAGACGA-GAGCC
* * * *
18624490 AGTGTAAGACC-TGTCTAGGACATGGCATCGACACCGATAGATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAAC-A-AGACGAGAGCC
*
18624539 AGTGTAAGACC-TGTCCGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATGGCATC
18624568 AGCCTCGATA
Statistics
Matches: 133, Mismatches: 27, Indels: 17
0.75 0.15 0.10
Matches are distributed among these distances:
43 1 0.01
44 31 0.23
45 1 0.01
46 11 0.08
47 32 0.24
48 26 0.20
49 30 0.23
50 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCAACAAGACGAGAGCC
Found at i:18624559 original size:93 final size:92
Alignment explanation
Indices: 18624398--18624567 Score: 229
Period size: 93 Copynumber: 1.8 Consensus size: 92
18624388 TATGAGAGCC
* * *
18624398 AGTGTAAGACCATGTCTGGAACATGGCATCGGCAATAAGACGAGAGCTAGTGTAAGACATGTCTG
1 AGTGTAAGACCATGTCTGGAACATGGCATCGACAATAAGACGAGAGCCAGTGTAAGACATGTCCG
18624463 GGACACGGCATCGGCTTGACATGTTTT
66 GGACACGGCATCGGCTTGACATGTTTT
* *
18624490 AGTGTAAGACC-TGTCTAGG-ACATGGCATCGACACCGAT-AGATGAGAGCCAGTGTAAGACCTG
1 AGTGTAAGACCATGTCT-GGAACATGGCATCGACA---ATAAGACGAGAGCCAGTGTAAGACATG
*
18624552 TCCGGGACATGGCATC
62 TCCGGGACACGGCATC
18624568 AGCCTCGATA
Statistics
Matches: 68, Mismatches: 6, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
91 18 0.26
92 13 0.19
93 35 0.51
94 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (92 bp):
AGTGTAAGACCATGTCTGGAACATGGCATCGACAATAAGACGAGAGCCAGTGTAAGACATGTCCG
GGACACGGCATCGGCTTGACATGTTTT
Found at i:18624577 original size:49 final size:48
Alignment explanation
Indices: 18624352--18624577 Score: 166
Period size: 49 Copynumber: 4.8 Consensus size: 48
18624342 GATGTGTGCT
* *
18624352 AGTGTAAGACCTGTCTGGGACAT-GCATCGGCCAC-AT-TATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATC-GCCTCGATAGATGAGAGCC
* * * * *
18624398 AGTGTAAGACCATGTCTGGAACATGGCATCG--GCAATAAGACGAGAGCT
1 AGTGTAAGACC-TGTCTGGGACATGGCATCGCCTCGAT-AGATGAGAGCC
* * * * * ****
18624446 AGTGTAAGACATGTCTGGGACACGGCATCGGCTTG--ACAT--GTTTT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGCCTCGATAGATGAGAGCC
*
18624490 AGTGTAAGACCTGTCTAGGACATGGCATCGACAC-CGATAGATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCG-C-CTCGATAGATGAGAGCC
*
18624539 AGTGTAAGACCTGTCCGGGACATGGCATCAGCCTCGATA
1 AGTGTAAGACCTGTCTGGGACATGGCATC-GCCTCGATA
18624578 TCAGTGTAAG
Statistics
Matches: 137, Mismatches: 28, Indels: 27
0.71 0.15 0.14
Matches are distributed among these distances:
44 29 0.21
45 2 0.01
46 16 0.12
47 32 0.23
48 23 0.17
49 34 0.25
50 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGCCTCGATAGATGAGAGCC
Found at i:18626742 original size:29 final size:29
Alignment explanation
Indices: 18626701--18626788 Score: 142
Period size: 29 Copynumber: 3.1 Consensus size: 29
18626691 GTGAGCATGA
18626701 ATAT-AATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
** *
18626729 ATATAAATGTGATTTGGGCCTAAAAGGTC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
18626758 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
18626787 AT
1 AT
18626789 GTGAATATAA
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 4 0.08
29 49 0.92
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.32
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:18627447 original size:13 final size:13
Alignment explanation
Indices: 18627429--18627459 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
18627419 GTGTGTAACA
18627429 GATGGATTATTGG
1 GATGGATTATTGG
18627442 GATGGATTATTGG
1 GATGGATTATTGG
18627455 GATGG
1 GATGG
18627460 GATTGCACTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.42, T:0.35
Consensus pattern (13 bp):
GATGGATTATTGG
Found at i:18629262 original size:27 final size:27
Alignment explanation
Indices: 18629231--18629506 Score: 372
Period size: 27 Copynumber: 10.2 Consensus size: 27
18629221 TTAGTTTACC
*
18629231 AAATTACCAAAATATCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
** * * *
18629258 AAATTAATAAAATACACTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
18629285 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* **
18629312 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTA
18629339 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * ** *
18629366 AAATTACTAAAATACCCTTTATTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
18629393 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
18629420 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
18629447 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
18629474 AAATTACCAAAATATCCCTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
18629501 AAATTA
1 AAATTA
18629507 TTGAAATACC
Statistics
Matches: 213, Mismatches: 36, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 213 1.00
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:18629513 original size:27 final size:27
Alignment explanation
Indices: 18629231--18629565 Score: 275
Period size: 27 Copynumber: 12.4 Consensus size: 27
18629221 TTAGTTTACC
* * *
18629231 AAATTACCAAAATATCCCTGGTTTGTA
1 AAATTATCAAAATACCCCTGATTTGTA
* * * *
18629258 AAATTAAT-AAAATACACTTGGTTTATA
1 AAATT-ATCAAAATACCCCTGATTTGTA
* * *
18629285 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTATCAAAATACCCCTGATTTGTA
* * * **
18629312 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTATCAAAATACCCCTGATTTGTA
* *
18629339 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTATCAAAATACCCCTGATTTGTA
* * *
18629366 AAATTA-CTAAAATACCCTTTATTTATA
1 AAATTATC-AAAATACCCCTGATTTGTA
* *
18629393 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTATCAAAATACCCCTGATTTGTA
* *
18629420 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTATCAAAATACCCCTGATTTGTA
18629447 AAATTATCAAAATACCCCT-AGTTTGTA
1 AAATTATCAAAATACCCCTGA-TTTGTA
* * *
18629474 AAATTACCAAAATATCCCTGATTTGTG
1 AAATTATCAAAATACCCCTGATTTGTA
** **
18629501 AAATTATTGAAATA-CCCTCGACCTGTA
1 AAATTATCAAAATACCCCT-GATTTGTA
** *
18629528 AAATTATTGAAATA-CCCTCGACTTGTA
1 AAATTATCAAAATACCCCT-GATTTGTA
*
18629555 AAATTACCAAA
1 AAATTATCAAA
18629566 GTACTCTTGA
Statistics
Matches: 261, Mismatches: 40, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
26 6 0.02
27 252 0.97
28 3 0.01
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTATCAAAATACCCCTGATTTGTA
Found at i:18629640 original size:27 final size:27
Alignment explanation
Indices: 18629610--18629804 Score: 241
Period size: 27 Copynumber: 7.2 Consensus size: 27
18629600 CGATTTACAA
* * *
18629610 AATTACTGAAATAACCCTGTAGGATAG
1 AATTACTGAAATACCCCTATAGGGTAG
**
18629637 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
18629664 AATTA-TCGAAATACCCCTATAGGGTAG
1 AATTACT-GAAATACCCCTATAGGGTAG
*
18629691 AATTACTGAAATGCCCCTATAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
* * *
18629718 AATTA-TCGCAATACCCTTGTAGGGTAG
1 AATTACT-GAAATACCCCTATAGGGTAG
*
18629745 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTATAGGGTAG
* * *
18629772 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACTGAAATACCCCTATAGGGTAG
18629799 AATTAC
1 AATTAC
18629805 CAAGATACCT
Statistics
Matches: 144, Mismatches: 20, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
26 1 0.01
27 142 0.99
28 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTATAGGGTAG
Found at i:18630307 original size:22 final size:22
Alignment explanation
Indices: 18630255--18630319 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
18630245 TTAAAGCCTT
* *
18630255 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
18630277 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
18630299 CTGATTATGGTTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
18630320 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.22, G:0.23, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:18630735 original size:31 final size:31
Alignment explanation
Indices: 18630689--18630799 Score: 150
Period size: 31 Copynumber: 3.5 Consensus size: 31
18630679 TTGCATTCAC
* *
18630689 ATTCTGATTTTTGATTCTGTTACCTAATAATG
1 ATTCTGA-TTCTGATTCTGTTACCTAATACTG
* *
18630721 ATTCTGATTTTGATTCTGTTACCTTATACTG
1 ATTCTGATTCTGATTCTGTTACCTAATACTG
* * *
18630752 ATTCTGATTCTGATTCTATCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTAATACTG
18630783 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
18630800 AATTCTGATA
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
31 65 0.90
32 7 0.10
ACGTcount: A:0.22, C:0.17, G:0.12, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTAATACTG
Found at i:18630817 original size:18 final size:17
Alignment explanation
Indices: 18630796--18630829 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
18630786 CTGATTCTGA
18630796 TTCTAATTCTGATAATGT
1 TTCTAATTCTG-TAATGT
*
18630814 TTCTTATTCTGTAATG
1 TTCTAATTCTGTAATG
18630830 GGTTAAAGCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.53
Consensus pattern (17 bp):
TTCTAATTCTGTAATGT
Found at i:18630823 original size:6 final size:6
Alignment explanation
Indices: 18630719--18630808 Score: 76
Period size: 6 Copynumber: 14.7 Consensus size: 6
18630709 TACCTAATAA
* * *
18630719 TGATTC TGATTT TGATTC TG-TTACC TTATAC TGATTC TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGATTC
* * *
18630768 T-ATCACC TAATTC TGATTC TGATTC TGATTC TAATTC TGAT
1 TGAT--TC TGATTC TGATTC TGATTC TGATTC TGATTC TGAT
18630809 AATGTTTCTT
Statistics
Matches: 67, Mismatches: 11, Indels: 12
0.74 0.12 0.13
Matches are distributed among these distances:
5 4 0.06
6 56 0.84
7 4 0.06
8 3 0.04
ACGTcount: A:0.21, C:0.18, G:0.12, T:0.49
Consensus pattern (6 bp):
TGATTC
Found at i:18632799 original size:27 final size:27
Alignment explanation
Indices: 18632753--18633108 Score: 345
Period size: 27 Copynumber: 13.2 Consensus size: 27
18632743 CTTACCAAAG
* *
18632753 TACCAAAATACCCCTAGTTTGTAAAAT
1 TACCAAAATACCCTTGGTTTGTAAAAT
* * *
18632780 TACTAAAAGACCCTTGGTTTATAAAAT
1 TACCAAAATACCCTTGGTTTGTAAAAT
* *
18632807 CACCAAAATACCCCTGGTTTGTAAAAT
1 TACCAAAATACCCTTGGTTTGTAAAAT
**
18632834 TACCAAAATACCCTTGGTTTACAAAAT
1 TACCAAAATACCCTTGGTTTGTAAAAT
* *
18632861 CACCAAAATACCCTTAGTTTGTAAAAT
1 TACCAAAATACCCTTGGTTTGTAAAAT
* * **
18632888 TACTAAAATACCCTTTGTTAATAAAAT
1 TACCAAAATACCCTTGGTTTGTAAAAT
*
18632915 TACCAAAATACCATTGGTTTGTAAAAT
1 TACCAAAATACCCTTGGTTTGTAAAAT
*
18632942 TACCAAAATACCCCTGGTTTGTAAAAT
1 TACCAAAATACCCTTGGTTTGTAAAAT
** * *
18632969 TATAAAAATACCCCTAGTTTGTAAAAT
1 TACCAAAATACCCTTGGTTTGTAAAAT
* *
18632996 TACCAAAATATCCC-TGATTTGTGAAAT
1 TACCAAAATA-CCCTTGGTTTGTAAAAT
* * *** **
18633023 TACTAAAATACCCTCGACCTAAAAAAT
1 TACCAAAATACCCTTGGTTTGTAAAAT
*** * **
18633050 TATTGAAATACCCTCGACTTGTAAAAT
1 TACCAAAATACCCTTGGTTTGTAAAAT
* * *
18633077 TACCAAAGTACCCTTGATTTATAAAAT
1 TACCAAAATACCCTTGGTTTGTAAAAT
18633104 TACCA
1 TACCA
18633109 TTTTACCCTC
Statistics
Matches: 270, Mismatches: 57, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
26 3 0.01
27 264 0.98
28 3 0.01
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
TACCAAAATACCCTTGGTTTGTAAAAT
Found at i:18633116 original size:81 final size:81
Alignment explanation
Indices: 18632987--18633143 Score: 190
Period size: 81 Copynumber: 1.9 Consensus size: 81
18632977 TACCCCTAGT
* * *
18632987 TTGTAAAATTACCAAAATATCCCTGATTTGTGAAATTACTAAAATACCCTCGACCTAAAAAATTA
1 TTGTAAAATTACCAAAATATCCCTGATTTATAAAATTACCAAAATACCCTCGACCTAAAAAATTA
**
18633052 TTGAAATACCCTCGAC
66 CCGAAATACCCTCGAC
* *** ** *
18633068 TTGTAAAATTACCAAAGTA-CCCTTGATTTATAAAATTACCATTTTACCCTCGATTTACAAAATT
1 TTGTAAAATTACCAAAATATCCC-TGATTTATAAAATTACCAAAATACCCTCGACCTAAAAAATT
18633132 ACCGAAATACCC
65 ACCGAAATACCC
18633144 CTGTAGGGTA
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
80 3 0.05
81 60 0.95
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (81 bp):
TTGTAAAATTACCAAAATATCCCTGATTTATAAAATTACCAAAATACCCTCGACCTAAAAAATTA
CCGAAATACCCTCGAC
Found at i:18633158 original size:27 final size:27
Alignment explanation
Indices: 18633128--18633348 Score: 250
Period size: 27 Copynumber: 8.3 Consensus size: 27
18633118 CGATTTACAA
18633128 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
18633155 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
18633182 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
18633209 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
18633236 GATTATCGCAATACCCCTGTAAGGTA-
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
18633262 ATTTATCGAAATACCCCTGCAGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*** * *
18633289 AATTATTAAAATACCCCTATAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
18633316 AATTACC-AAGATA-CCTTGTGGGGTAA
1 AATTACCGAA-ATACCCCTGTAGGGTAG
18633342 AATTACC
1 AATTACC
18633349 ATTTTGCCCC
Statistics
Matches: 164, Mismatches: 28, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
26 37 0.23
27 127 0.77
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:18633305 original size:107 final size:108
Alignment explanation
Indices: 18633137--18633330 Score: 275
Period size: 107 Copynumber: 1.8 Consensus size: 108
18633127 AAATTACCGA
* * * * *
18633137 AATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACTGAAATACCCCTGT
1 AATACCCCTGTAAGGTAGAATTACCGAAATACCCCTACAGGATAGAATTACTAAAATACCCCTAT
18633202 AGGGTAGAATTACCGAA-ATACCCCTGTAGGGTAGGATTATCGC
66 AGGGTAGAATTACC-AAGATACCCCTGTAGGGTAGGATTATCGC
* * * *
18633245 AATACCCCTGTAAGGTA-ATTTATCGAAATACCCCTGCAGGATAGAATTATTAAAATACCCCTAT
1 AATACCCCTGTAAGGTAGAATTACCGAAATACCCCTACAGGATAGAATTACTAAAATACCCCTAT
*
18633309 AGGGTGGAATTACCAAGATACC
66 AGGGTAGAATTACCAAGATACC
18633331 TTGTGGGGTA
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
106 2 0.03
107 57 0.76
108 16 0.21
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.25
Consensus pattern (108 bp):
AATACCCCTGTAAGGTAGAATTACCGAAATACCCCTACAGGATAGAATTACTAAAATACCCCTAT
AGGGTAGAATTACCAAGATACCCCTGTAGGGTAGGATTATCGC
Found at i:18633313 original size:80 final size:81
Alignment explanation
Indices: 18633128--18633330 Score: 241
Period size: 80 Copynumber: 2.5 Consensus size: 81
18633118 CGATTTACAA
* *
18633128 AATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAGAATTACTGAAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAAGGTAGAATTACTGAAA
* *
18633193 TACCCCTGTAGGGTAG
66 TACCCCTGCAGGATAG
* * * * * *
18633209 AATTACCGAAATACCCCTGTAGGGTAGGATTATCGCAATACCCCTGTAAGGTA-ATTTA-TCGAA
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAAGGTAGAATTACT-GAA
18633272 ATACCCCTGCAGGATAG
65 ATACCCCTGCAGGATAG
** * *
18633289 AATTATTAAAATACCCCTATAGGGTGGAATTACC-AAGATACC
1 AATTACCAAAATACCCCTGTAGGGTAGAATTACCGAA-ATACC
18633331 TTGTGGGGTA
Statistics
Matches: 104, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
79 2 0.02
80 54 0.52
81 48 0.46
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (81 bp):
AATTACCAAAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTATAAGGTAGAATTACTGAAA
TACCCCTGCAGGATAG
Found at i:18633827 original size:22 final size:22
Alignment explanation
Indices: 18633775--18633839 Score: 71
Period size: 22 Copynumber: 3.0 Consensus size: 22
18633765 TTAAAGCCTT
* *
18633775 CTGATTATGGCTTTGTGTCATC
1 CTGATTATGGCTTTGTGCCAAC
*
18633797 CT-ACATATGGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
18633819 CTGATTATGG-TTGTGTGCCAA
1 CTGATTATGGCTT-TGTGCCAA
18633840 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 3 0.08
22 32 0.89
23 1 0.03
ACGTcount: A:0.18, C:0.20, G:0.23, T:0.38
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:18634028 original size:27 final size:27
Alignment explanation
Indices: 18633998--18634099 Score: 118
Period size: 27 Copynumber: 3.8 Consensus size: 27
18633988 ATTCTGTTAA
* *
18633998 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
18634025 GTGGCTATGCCACAAATATTTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
18634052 GTGGCTCTGCCACAATATCTGTATT-TG
1 GTGGCTCTGCCACAATATCTGT-TTCTG
* *
18634079 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
18634100 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
26 7 0.11
27 50 0.77
28 8 0.12
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.38
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:18634276 original size:6 final size:6
Alignment explanation
Indices: 18634265--18634355 Score: 71
Period size: 6 Copynumber: 14.8 Consensus size: 6
18634255 TTACCTAATA
* * *
18634265 CTGATT CTGATT TTGATT CTG-TT ACCTGATA CTGATT CTAATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT --CTGATT CTGATT CTGATT CTGATT
* *
18634314 CTG-TCAC CTAATT CTGATT CTGATT CTGATT CT-AGTT CTGAT
1 CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
18634356 AATGTTTCTT
Statistics
Matches: 67, Mismatches: 10, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
5 4 0.06
6 55 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:18634282 original size:31 final size:31
Alignment explanation
Indices: 18634247--18634347 Score: 139
Period size: 31 Copynumber: 3.3 Consensus size: 31
18634237 TTCTAATTTT
*
18634247 TGATTCTATTACCTAATACTGATTCTGATTT
1 TGATTCTATTACCTAATACTGATTCTGATTC
* * *
18634278 TGATTCTGTTACCTGATACTGATTCTAATTC
1 TGATTCTATTACCTAATACTGATTCTGATTC
* * *
18634309 TGATTCTGTCACCTAATTCTGATTCTGATTC
1 TGATTCTATTACCTAATACTGATTCTGATTC
18634340 TGATTCTA
1 TGATTCTA
18634348 GTTCTGATAA
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.23, C:0.19, G:0.12, T:0.47
Consensus pattern (31 bp):
TGATTCTATTACCTAATACTGATTCTGATTC
Found at i:18640966 original size:21 final size:24
Alignment explanation
Indices: 18640922--18640968 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
18640912 ATCGAAACAT
18640922 TTCACAAATAATTCACTAACATCA
1 TTCACAAATAATTCACTAACATCA
*
18640946 TTCACACATAA-TCA-T-ACATCA
1 TTCACAAATAATTCACTAACATCA
18640967 TT
1 TT
18640969 ACAGAGTCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 8 0.36
22 1 0.05
23 3 0.14
24 10 0.45
ACGTcount: A:0.43, C:0.26, G:0.00, T:0.32
Consensus pattern (24 bp):
TTCACAAATAATTCACTAACATCA
Found at i:18643291 original size:27 final size:27
Alignment explanation
Indices: 18643257--18643333 Score: 118
Period size: 27 Copynumber: 2.9 Consensus size: 27
18643247 GGGAAAAATA
* *
18643257 GTCATTTTACCCTACATGGGTATGTCG
1 GTCATTTTACACTACAAGGGTATGTCG
*
18643284 GTCATTTTACACTACAAGGGTATTTCG
1 GTCATTTTACACTACAAGGGTATGTCG
*
18643311 GTAATTTTACACTACAAGGGTAT
1 GTCATTTTACACTACAAGGGTAT
18643334 TTCAATAATT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.36
Consensus pattern (27 bp):
GTCATTTTACACTACAAGGGTATGTCG
Found at i:18643334 original size:27 final size:27
Alignment explanation
Indices: 18643274--18643825 Score: 553
Period size: 27 Copynumber: 20.6 Consensus size: 27
18643264 TACCCTACAT
* * * *
18643274 GGGTATGTCGGTCATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CGA
* *
18643301 GGGTATTTCGGTAATTTTAC-ACTACAA
1 GGGTATTTCGGTAATTTTACAAAT-CGA
** **
18643328 GGGTATTTCAATAATTTTACAAATAAA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
18643355 GGATGTTTCGGTAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
** *
18643382 GGGTATTTCAATAATTTTATAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
18643409 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * * *
18643436 GGGTGTTTCAGTAATTTCACAAAT-TA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
18643462 GGGGTATTTCAGTAATTTTACAAATTGA
1 -GGGTATTTCGGTAATTTTACAAATCGA
* *
18643490 GGGTATTTCAGTAATTTCAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * *
18643516 TGGTATTTTGGTAATTTTACAAATCCA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
18643543 TGGTATTTCGATAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* * * *
18643570 GCGTATTTTGATAATTTTACAAATAGA
1 GGGTATTTCGGTAATTTTACAAATCGA
**
18643597 GGGTATTTTAGTAATTTTAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
18643623 GGGTATTTCAGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
18643650 GGGTATTTCGATAATTTCAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* ** *
18643676 AGGTATTTTAGTAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
18643703 GGGTATTTTGGTAATTTCAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
18643729 AGGTATTTAGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
** *
18643756 GGGTATTTTAGTAATTTCAC-AATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
*
18643782 GAGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
* *
18643809 GGGTATTCCAGTAATTT
1 GGGTATTTCGGTAATTT
18643826 CTCTTTATTA
Statistics
Matches: 443, Mismatches: 74, Indels: 16
0.83 0.14 0.03
Matches are distributed among these distances:
26 111 0.25
27 329 0.74
28 3 0.01
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGA
Found at i:18643548 original size:53 final size:53
Alignment explanation
Indices: 18643300--18643826 Score: 603
Period size: 53 Copynumber: 9.9 Consensus size: 53
18643290 TTACACTACA
* * * * **
18643300 AGGGTATTTCGGTAATTTTAC-ACTACAAGGGTATTTCAATAATTTTACAAATAA
1 AGGGTATTTCGGTAATTTTACAAAT-CGAGGGTATTTCAGTAATTTCAC-AATCG
* * * * * *
18643354 AGGATGTTTCGGTAATTTTACAAATTGAGGGTATTTCAATAATTTTATAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCA-CAATCG
* *
18643408 AGGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCAGTAATTTCACAAAT-T
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCAC-AATCG
* *
18643461 AGGGGTATTTCAGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAATCG
1 A-GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAATCG
* * * * *
18643515 ATGGTATTTTGGTAATTTTACAAATCCATGGTATTTC-GATAATTTTACAAATCG
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAG-TAATTTCAC-AATCG
* * * * * *
18643569 AGCGTATTTTGATAATTTTACAAATAGAGGGTATTTTAGTAATTTTACAATCG
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAATCG
*
18643622 AGGGTATTTCAGTAATTTTACAAATCGAGGGTATTTC-GATAATTTCACAATCG
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAG-TAATTTCACAATCG
* ** * **
18643675 AAGGTATTTTAGTAATTTTACAAATTGAGGGTATTTTGGTAATTTCACAATCG
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAATCG
* * *
18643728 AAGGTATTTAGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTCACAATCG
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAATCG
* *
18643781 AGAGTATTTCGGTAATTTTACAAATCGAGGGTATTCCAGTAATTTC
1 AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTC
18643827 TCTTTATTAT
Statistics
Matches: 409, Mismatches: 54, Indels: 21
0.85 0.11 0.04
Matches are distributed among these distances:
52 2 0.00
53 228 0.56
54 176 0.43
55 3 0.01
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (53 bp):
AGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAATCG
Found at i:18643558 original size:80 final size:81
Alignment explanation
Indices: 18643300--18643826 Score: 547
Period size: 80 Copynumber: 6.6 Consensus size: 81
18643290 TTACACTACA
* * * * * ** * * *
18643300 AGGGTATTTCGGTAATTTTAC-ACTACAAGGGTATTTCAATAATTTTACAAATAAAGGATGTTTC
1 AGGGTATTTCGATAATTTTACAAAT-CGAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTT
* *
18643364 GGTAATTTTACAAATTG
65 AGTAATTTTACAAATCG
* * * * * *
18643381 AGGGTATTTCAATAATTTTATAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTGTTTCA
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTTA
* *
18643446 GTAATTTCACAAAT-T
66 GTAATTTTACAAATCG
* *
18643461 AGGGGTATTTC-AGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCAC-AATCGATGGTATTT
1 A-GGGTATTTCGA-TAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTT
* *
18643524 TGGTAATTTTACAAATCC
64 TAGTAATTTTACAAATCG
* * * * *
18643542 ATGGTATTTCGATAATTTTACAAATCGAGCGTATTT-TGATAATTTTACAAATAGAGGGTATTTT
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAG-TAATTTCACAAATCGAGGGTATTTT
18643606 AGTAATTTTAC-AATCG
65 AGTAATTTTACAAATCG
*
18643622 AGGGTATTTC-AGTAATTTTACAAATCGAGGGTATTTC-GATAATTTCAC-AATCGAAGGTATTT
1 AGGGTATTTCGA-TAATTTTACAAATCGAGGGTATTTCAG-TAATTTCACAAATCGAGGGTATTT
*
18643684 TAGTAATTTTACAAATTG
64 TAGTAATTTTACAAATCG
* * * * *
18643702 AGGGTATTTTGGTAATTTCAC-AATCGAAGGTATTT-AGGTAATTTTACAAATCGAGGGTATTTT
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCA-GTAATTTCACAAATCGAGGGTATTTT
*
18643765 AGTAATTTCAC-AATCG
65 AGTAATTTTACAAATCG
* * *
18643781 AGAGTATTTCGGTAATTTTACAAATCGAGGGTATTCCAGTAATTTC
1 AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTC
18643827 TCTTTATTAT
Statistics
Matches: 378, Mismatches: 52, Indels: 33
0.82 0.11 0.07
Matches are distributed among these distances:
79 69 0.18
80 176 0.47
81 131 0.35
82 2 0.01
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.39
Consensus pattern (81 bp):
AGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTTA
GTAATTTTACAAATCG
Found at i:18650097 original size:43 final size:43
Alignment explanation
Indices: 18650044--18650168 Score: 139
Period size: 43 Copynumber: 2.9 Consensus size: 43
18650034 ATTGAGATAT
* * * *
18650044 GATTACATGTAAGACTATGTCTGGGACATTGGCATTGTATTGA
1 GATTTCATGTAAGACCATGTCTAGGACATTGGCATTGTATTCA
* *
18650087 GATTTCATGTAAGACCATGTCTCA-GACATTGGCATCGTTAATCA
1 GATTTCATGTAAGACCATGTCT-AGGACATTGGCATTG-TATTCA
* *
18650131 -ATTTCATGTAAGACCATATCTAGGATA-TGGCATTGTAT
1 GATTTCATGTAAGACCATGTCTAGGACATTGGCATTGTAT
18650169 GAGCTTATGT
Statistics
Matches: 69, Mismatches: 10, Indels: 8
0.79 0.11 0.09
Matches are distributed among these distances:
41 2 0.03
42 8 0.12
43 55 0.80
44 4 0.06
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (43 bp):
GATTTCATGTAAGACCATGTCTAGGACATTGGCATTGTATTCA
Found at i:18657829 original size:43 final size:43
Alignment explanation
Indices: 18657679--18657857 Score: 150
Period size: 43 Copynumber: 4.2 Consensus size: 43
18657669 ACATTAGGTT
* * *
18657679 ATTGATATATGATTACATGCAAGACCATGTCTGGAACATTGGC
1 ATTGATATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
* * * *
18657722 ATTG-TATTGAGATTTCGTGTAAGACCATGTCTCGGACATTGGC
1 ATTGATA-TGTGATTACATGTAAGACCATGTCTGGGACATTGGC
* * * * * * *
18657765 ATCGTTAAT-CGATTTCGTGTAAGACCCTGTCTGGGACAGTGGC
1 ATTGAT-ATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
* * * *
18657808 ATTGATATGTGATAACATGTAAGACCATATTTGGGATA-TGGC
1 ATTGATATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
18657850 ATTG-TATG
1 ATTGATATG
18657858 AGCTTATGTG
Statistics
Matches: 110, Mismatches: 22, Indels: 10
0.77 0.15 0.07
Matches are distributed among these distances:
41 4 0.04
42 12 0.11
43 91 0.83
44 2 0.02
45 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (43 bp):
ATTGATATGTGATTACATGTAAGACCATGTCTGGGACATTGGC
Found at i:18660944 original size:22 final size:21
Alignment explanation
Indices: 18660914--18660956 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 21
18660904 TACTATTATA
18660914 ATTTATTGTTTAGATTTTAGG
1 ATTTATTGTTTAGATTTTAGG
18660935 ATTTCATTGTTTAGATTTTAGG
1 ATTT-ATTGTTTAGATTTTAGG
18660957 GCATAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.23, C:0.02, G:0.19, T:0.56
Consensus pattern (21 bp):
ATTTATTGTTTAGATTTTAGG
Found at i:18665688 original size:55 final size:55
Alignment explanation
Indices: 18665599--18665715 Score: 139
Period size: 55 Copynumber: 2.1 Consensus size: 55
18665589 CGGCCATGTG
* *
18665599 TTAGAACCATGGGCGAACCTGCCAAAACAACACGGGCGTGT-GACATGCCCGTGTC
1 TTAGAACCATGGGCGAACCTGACAAAACAACACGGGCAT-TCGACATGCCCGTGTC
** * * * *
18665654 TTAGAACCATGGTTGAACCTGAGAAAATATCACGGGCATTCGCCATGCCCGTGTC
1 TTAGAACCATGGGCGAACCTGACAAAACAACACGGGCATTCGACATGCCCGTGTC
18665709 -TAGAACC
1 TTAGAACC
18665716 CGTGGTTAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
54 8 0.15
55 45 0.85
ACGTcount: A:0.28, C:0.27, G:0.25, T:0.20
Consensus pattern (55 bp):
TTAGAACCATGGGCGAACCTGACAAAACAACACGGGCATTCGACATGCCCGTGTC
Found at i:18675471 original size:53 final size:53
Alignment explanation
Indices: 18675279--18675530 Score: 230
Period size: 55 Copynumber: 4.8 Consensus size: 53
18675269 AGGGTTTAAT
* *
18675279 GATACCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGG-CATTGGTAA-G-TTCATAAGGCAAG
* * * * *
18675334 GATTCCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTACAAGGCAAAT
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC-AAG
* * *
18675390 G-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGCAAG
* * *
18675442 GATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT--TCAA---AAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCAT-AAGGCAAG
* ** * *
18675491 GATACCACGTAAGACCATGATAAGTCATGGCAATGGTAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
18675531 GTACCCGTGT
Statistics
Matches: 166, Mismatches: 25, Indels: 18
0.79 0.12 0.09
Matches are distributed among these distances:
49 38 0.23
51 1 0.01
52 7 0.04
53 42 0.25
54 8 0.05
55 67 0.40
56 3 0.02
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (53 bp):
GATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGCAAG
Found at i:18675482 original size:108 final size:110
Alignment explanation
Indices: 18675283--18675483 Score: 318
Period size: 108 Copynumber: 1.8 Consensus size: 110
18675273 TTTAATGATA
*
18675283 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATTCCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
*
18675348 CCATGTCAAGACATGGCATTGATAAGTTACTACAAGGCAAATGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTACAAGGCAAATGTC
* *
18675393 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
18675455 ACCATGTCGAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
18675484 TCAAAAGGAT
Statistics
Matches: 84, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
107 3 0.04
108 48 0.57
109 7 0.08
110 26 0.31
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGAAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTACAAGGCAAATGTC
Found at i:18682696 original size:19 final size:19
Alignment explanation
Indices: 18682667--18682732 Score: 62
Period size: 19 Copynumber: 3.2 Consensus size: 19
18682657 AACAACCTTC
18682667 AAAAGTTTAAAATAATTTTT
1 AAAA-TTTAAAATAATTTTT
*
18682687 AAAATTTAAAAT-ATTTATA
1 AAAATTTAAAATAATTT-TT
18682706 AAAATTTCAAAATTTATATTTTT
1 AAAATTT-AAAA--TA-ATTTTT
18682729 AAAA
1 AAAA
18682733 AAAAATTAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
18 4 0.11
19 16 0.42
20 8 0.21
22 1 0.03
23 5 0.13
24 4 0.11
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (19 bp):
AAAATTTAAAATAATTTTT
Found at i:18687824 original size:26 final size:26
Alignment explanation
Indices: 18687795--18687852 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 26
18687785 TTGCAATAGC
* *
18687795 TGATTTGACCAAATGATTTTATTAAT
1 TGATTTAACCAAATAATTTTATTAAT
*
18687821 TGATTTAACCAACTAATTTTATTAAT
1 TGATTTAACCAAATAATTTTATTAAT
18687847 T-ATTTA
1 TGATTTA
18687853 TTTAAAAGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 5 0.17
26 24 0.83
ACGTcount: A:0.36, C:0.09, G:0.07, T:0.48
Consensus pattern (26 bp):
TGATTTAACCAAATAATTTTATTAAT
Found at i:18688877 original size:18 final size:18
Alignment explanation
Indices: 18688843--18688889 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
18688833 ATTTTTAAGA
*
18688843 ATTAAAAATCATTAAAATT
1 ATTAAAAAT-ATGAAAATT
18688862 ATTAAAAATATGAAAATT
1 ATTAAAAATATGAAAATT
*
18688880 A-AAAAAATAT
1 ATTAAAAATAT
18688890 TCTTTAATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 8 0.31
18 9 0.35
19 9 0.35
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (18 bp):
ATTAAAAATATGAAAATT
Found at i:18689669 original size:25 final size:25
Alignment explanation
Indices: 18689637--18689686 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
18689627 AGTTTTCTTC
18689637 TCTTCTTCTTTGCTATCTTTCTTTT
1 TCTTCTTCTTTGCTATCTTTCTTTT
* *
18689662 TCTTCTTCTTTGCTCTTTTTCTTTT
1 TCTTCTTCTTTGCTATCTTTCTTTT
18689687 CTTTTTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.02, C:0.24, G:0.04, T:0.70
Consensus pattern (25 bp):
TCTTCTTCTTTGCTATCTTTCTTTT
Found at i:18705937 original size:38 final size:39
Alignment explanation
Indices: 18705853--18705987 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
18705843 ACCAATATGG
*
18705853 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
18705892 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
18705930 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATAGT--TGA
*
18705971 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
18705988 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 36 0.48
40 4 0.05
41 16 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:18713710 original size:38 final size:39
Alignment explanation
Indices: 18713626--18713760 Score: 116
Period size: 39 Copynumber: 3.4 Consensus size: 39
18713616 ACCAATATGG
*
18713626 CACCCAGTGCCTCATCGGATAGTTCGAAGTAATAGTTGA
1 CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
* * *
18713665 CACCCAGTGTCTCATCGGCCTAG-CCGAAGTAA-AGTTGG
1 CACCCAGTGCCTCATCGG-ATAGTCCGAAGTAATAGTTGA
* * * *
18713703 TACCCAGTACCTCATCGAATCTA-TCCGAAGAAATA-TAGTGA
1 CACCCAGTGCCTCATCGGA--TAGTCCGAAGTAATAGT--TGA
*
18713744 CACCCAGTGTCTCATCG
1 CACCCAGTGCCTCATCG
18713761 ACTCGAGGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
38 19 0.25
39 36 0.48
40 4 0.05
41 16 0.21
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGGATAGTCCGAAGTAATAGTTGA
Found at i:18720871 original size:15 final size:15
Alignment explanation
Indices: 18720851--18720884 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
18720841 TTTATGGGAA
18720851 CATCTTATGCCAGAT
1 CATCTTATGCCAGAT
18720866 CATCTTATGCCAGAT
1 CATCTTATGCCAGAT
18720881 CATC
1 CATC
18720885 ACTTCTCAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.32
Consensus pattern (15 bp):
CATCTTATGCCAGAT
Found at i:18721179 original size:17 final size:17
Alignment explanation
Indices: 18721154--18721193 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
18721144 TGGGGAAAAG
*
18721154 AAAATAAATGTAATGGA
1 AAAAAAAATGTAATGGA
* *
18721171 AAAAAAAATTTACTGGA
1 AAAAAAAATGTAATGGA
18721188 AAAAAA
1 AAAAAA
18721194 TATGGAACGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.65, C:0.03, G:0.12, T:0.20
Consensus pattern (17 bp):
AAAAAAAATGTAATGGA
Found at i:18721348 original size:10 final size:10
Alignment explanation
Indices: 18721321--18721359 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
18721311 TAAAAATCTA
18721321 AAAGATAAAT
1 AAAGATAAAT
18721331 ACAA-ATAAAT
1 A-AAGATAAAT
*
18721341 AAAGATAATT
1 AAAGATAAAT
18721351 AAAGATAAA
1 AAAGATAAA
18721360 AGCTAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.69, C:0.03, G:0.08, T:0.21
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:18722013 original size:3 final size:3
Alignment explanation
Indices: 18722007--18722039 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
18721997 ATTATTATTA
18722007 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
18722040 CTGCTTAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.00, G:0.33, T:0.67
Consensus pattern (3 bp):
TTG
Found at i:18726349 original size:46 final size:47
Alignment explanation
Indices: 18726253--18726425 Score: 157
Period size: 46 Copynumber: 3.7 Consensus size: 47
18726243 TCATATCTGT
* * *
18726253 GCCGATGCCATGTCCCAGACATGGTCTTACACT-GACACATCTC-GTA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGACTC-TCTCAATA
18726299 GCCGATG-CATGTCCCAAACAT-GTCTTACACTAGCACTCGTCTCAAT-
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAG-ACTC-TCTCAATA
** *
18726345 GCCGATGCCATGTCCCAAACATGGTCTTATGCTAG-CTCTCAT-AATGTG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGACTCTC-TCAA--TA
* *
18726393 GCCGATG-CATGTTCCAGACAT-GTCTTACACTAG
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAG
18726426 CTCACACAAG
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
44 10 0.09
45 18 0.17
46 35 0.32
47 28 0.26
48 17 0.16
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGACTCTCTCAATA
Found at i:18726370 original size:92 final size:94
Alignment explanation
Indices: 18726252--18726426 Score: 239
Period size: 94 Copynumber: 1.9 Consensus size: 94
18726242 ATCATATCTG
* *
18726252 TGCCGATGCCATGTCCCAGACATGGTCTTACACT-G-ACACAT-CTCGTAGCCGATGCATGTCCC
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATAAT-GTAGCCGATGCATGTCCC
18726314 AAACATGTCTTACACTAGCACTCGTCTCAA
65 AAACATGTCTTACACTAGCACTCGTCTCAA
** * * * *
18726344 TGCCGATGCCATGTCCCAAACATGGTCTTATGCTAGCTCTCATAATGTGGCCGATGCATGTTCCA
1 TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATAATGTAGCCGATGCATGTCCCA
*
18726409 GACATGTCTTACACTAGC
66 AACATGTCTTACACTAGC
18726427 TCACACAAGT
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
92 31 0.44
93 1 0.01
94 38 0.54
95 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (94 bp):
TGCCGATGCCATGTCCCAAACATGGTCTTACACTAGCACACATAATGTAGCCGATGCATGTCCCA
AACATGTCTTACACTAGCACTCGTCTCAA
Found at i:18726801 original size:30 final size:30
Alignment explanation
Indices: 18726765--18726822 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
18726755 AAATTCATAT
*
18726765 CTTTGATAAAATAACCATTTTGCCCCTAAA
1 CTTTGATAAAATAACCATTTTACCCCTAAA
18726795 CTTTGATAAAATAACCATTTTACCCCTA
1 CTTTGATAAAATAACCATTTTACCCCTA
18726823 GGCTCGAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.34
Consensus pattern (30 bp):
CTTTGATAAAATAACCATTTTACCCCTAAA
Found at i:18727788 original size:5 final size:5
Alignment explanation
Indices: 18727778--18727844 Score: 80
Period size: 5 Copynumber: 12.4 Consensus size: 5
18727768 AAAATAAAGT
*
18727778 AATAA AATAA AATAA AATAATA AATACT AATAA AATAA AATAA AATAA
1 AATAA AATAA AATAA AAT-A-A AATA-A AATAA AATAA AATAA AATAA
18727826 AATAAA TAATAA AATAA AA
1 AAT-AA -AATAA AATAA AA
18727845 ATTCATAAAA
Statistics
Matches: 55, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
5 38 0.69
6 10 0.18
7 7 0.13
ACGTcount: A:0.76, C:0.01, G:0.00, T:0.22
Consensus pattern (5 bp):
AATAA
Found at i:18727846 original size:33 final size:33
Alignment explanation
Indices: 18727768--18727846 Score: 99
Period size: 33 Copynumber: 2.3 Consensus size: 33
18727758 TCAATATCCA
18727768 AAAATAAAGTAATAAAATAAAATAAAATAATAAAT
1 AAAATAAA--AATAAAATAAAATAAAATAATAAAT
*
18727803 ACTAAT-AAAATAAAATAAAATAAAATAA-ATAAT
1 A-AAATAAAAATAAAATAAAATAAAATAATA-AAT
18727836 AAAATAAAAAT
1 AAAATAAAAAT
18727847 TCATAAAAGT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
32 4 0.10
33 29 0.74
35 3 0.08
36 3 0.08
ACGTcount: A:0.75, C:0.01, G:0.01, T:0.23
Consensus pattern (33 bp):
AAAATAAAAATAAAATAAAATAAAATAATAAAT
Found at i:18727852 original size:27 final size:28
Alignment explanation
Indices: 18727767--18727866 Score: 98
Period size: 28 Copynumber: 3.6 Consensus size: 28
18727757 ATCAATATCC
*
18727767 AAAAATAAAGTAATAAAATAAAATAAAAT
1 AAAAGTAAA-TAATAAAATAAAATAAAAT
* *
18727796 AATAAAT-ACTAATAAAATAAAATAAAAT
1 AA-AAGTAAATAATAAAATAAAATAAAAT
**
18727824 AAAA-TAAATAATAAAATAAAA-ATTCAT
1 AAAAGTAAATAATAAAATAAAATA-AAAT
*
18727851 AAAAGTAAAAAATAAA
1 AAAAGTAAATAATAAA
18727867 GTTTGGGTTA
Statistics
Matches: 62, Mismatches: 5, Indels: 9
0.82 0.07 0.12
Matches are distributed among these distances:
26 2 0.03
27 22 0.35
28 31 0.50
29 3 0.05
30 4 0.06
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.22
Consensus pattern (28 bp):
AAAAGTAAATAATAAAATAAAATAAAAT
Found at i:18734285 original size:10 final size:10
Alignment explanation
Indices: 18734258--18734295 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
18734248 TTAAATTCTA
*
18734258 AAAGATAAAT
1 AAAGATAATT
18734268 ACAA-ATAATT
1 A-AAGATAATT
18734278 AAAGATAATT
1 AAAGATAATT
18734288 AAAGATAA
1 AAAGATAA
18734296 AAGCTAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 21 0.84
11 2 0.08
ACGTcount: A:0.66, C:0.03, G:0.08, T:0.24
Consensus pattern (10 bp):
AAAGATAATT
Found at i:18736767 original size:5 final size:5
Alignment explanation
Indices: 18736757--18736784 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
18736747 AGAGAGTAAT
18736757 AAATA AAATA AAATA AAATA AAATA AAA
1 AAATA AAATA AAATA AAATA AAATA AAA
18736785 CAAAGAGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAATA
Found at i:18747591 original size:75 final size:75
Alignment explanation
Indices: 18747508--18747658 Score: 205
Period size: 75 Copynumber: 2.0 Consensus size: 75
18747498 ATTTTAACTC
* * * * * *
18747508 AATTAATTTTTGTGTTTTGGGCTTT-GTCTTGTCCAAATATCTCCAAAACAGATATCACAATGCT
1 AATTAATTTTTATGTTTTAGGCTTTAAT-TTGTCCAAATATCTCAAAAACAGATAGCACAATACT
18747572 TATATTTTAAA
65 TATATTTTAAA
* *
18747583 AATTAATTTTTATGTTTTAGGTTTTAATTTGTCCAAATATCTCAAAAACAGATAGCCCAATACTT
1 AATTAATTTTTATGTTTTAGGCTTTAATTTGTCCAAATATCTCAAAAACAGATAGCACAATACTT
*
18747648 TTATTTTAAA
66 ATATTTTAAA
18747658 A
1 A
18747659 TTTGTCAATT
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
75 65 0.98
76 1 0.02
ACGTcount: A:0.34, C:0.13, G:0.10, T:0.43
Consensus pattern (75 bp):
AATTAATTTTTATGTTTTAGGCTTTAATTTGTCCAAATATCTCAAAAACAGATAGCACAATACTT
ATATTTTAAA
Found at i:18750022 original size:185 final size:186
Alignment explanation
Indices: 18749607--18750023 Score: 527
Period size: 188 Copynumber: 2.2 Consensus size: 186
18749597 AAAGTGCATG
* * * * * * * * * * *
18749607 GCAGATTTGGATTTTTCCAAAGTTATGGTCTGCCATGTGAATATATATAACCTTAGGGTTTAGTG
1 GCAGGTTTGGATTTTTGCAAACTTATAGCCTACCATTTGCATACAGATAGCCTTAGGGTTTAGTG
* *
18749672 ACAAATCATTTTTTATTGAATTATTTGAAAGTGTGTATGTCATTAAATTATTAAAATATGATTCA
66 ACAAATAATTTTTTATTGAATTATTTGAAACTGTGTATGTCATTAAATTATTAAAATATGATT-A
* * *
18749737 AATATATATTTTAAATGTTGATTGAAATATGATTTTATTGTTTGTATCAAACTGAATA
130 AATATATATCTTAAATCTTAATTGAAATATGA-TTTATTGTTTGTATCAAACTGAATA
*
18749795 GTAGGTTTGGATTTTTGCAAACTTATAGCCTACCATTTGCATACAGATAGCCTTAGGGTTTAGTG
1 GCAGGTTTGGATTTTTGCAAACTTATAGCCTACCATTTGCATACAGATAGCCTTAGGGTTTAGTG
* * *
18749860 CCAAATAATTTTTTTATTGAATTATTTGAAACTGTGTATGTCATTGAATTATTCAAATATGATT-
66 ACAAATAA-TTTTTTATTGAATTATTTGAAACTGTGTATGTCATTAAATTATTAAAATATGATTA
* * *
18749924 TATGAT-TATCTTAAATCTTAATTGAAATATGA-TTATTGTTTGTATCAAATTGAATT
130 AAT-ATATATCTTAAATCTTAATTGAAATATGATTTATTGTTTGTATCAAACTGAATA
* * *
18749980 GCAGGTTTGGATTTTTGTAAACTTATTG-TTCACCATTTGCATAC
1 GCAGGTTTGGATTTTTGCAAACTTATAGCCT-ACCATTTGCATAC
18750024 TAATTACCTT
Statistics
Matches: 199, Mismatches: 27, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
184 1 0.01
185 60 0.30
187 25 0.13
188 61 0.31
189 52 0.26
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (186 bp):
GCAGGTTTGGATTTTTGCAAACTTATAGCCTACCATTTGCATACAGATAGCCTTAGGGTTTAGTG
ACAAATAATTTTTTATTGAATTATTTGAAACTGTGTATGTCATTAAATTATTAAAATATGATTAA
ATATATATCTTAAATCTTAATTGAAATATGATTTATTGTTTGTATCAAACTGAATA
Found at i:18750036 original size:185 final size:185
Alignment explanation
Indices: 18749656--18750036 Score: 520
Period size: 185 Copynumber: 2.0 Consensus size: 185
18749646 AATATATATA
* *
18749656 ACCTTAGGGTTTAGTGACAAATCATTTTTTATTGAATTATTTGAAAGTGTGTATGTCATTAAATT
1 ACCTTAGGGTTTAGTGACAAATAATTTTTTATTGAATTATTTGAAACTGTGTATGTCATTAAATT
* * *
18749721 ATTAAAATATGATTCAAATATATATTTTAAATGTTGATTGAAATATGATTTTATTGTTTGTATCA
66 ATTAAAATATGATT-AAATATATATCTTAAATCTTAATTGAAATATGA-TTTATTGTTTGTATCA
*
18749786 AACTGAATAGTAGGTTTGGATTTTTGCAAACTTATAGCCTACCATTTGCATACAGAT
129 AACTGAATAGCAGGTTTGGATTTTTGCAAACTTATAGCCTACCATTTGCATACAGAT
* *
18749843 AGCCTTAGGGTTTAGTGCCAAATAATTTTTTTATTGAATTATTTGAAACTGTGTATGTCATTGAA
1 A-CCTTAGGGTTTAGTGACAAATAA-TTTTTTATTGAATTATTTGAAACTGTGTATGTCATTAAA
* *
18749908 TTATTCAAATATGATT-TATGAT-TATCTTAAATCTTAATTGAAATATGA-TTATTGTTTGTATC
64 TTATTAAAATATGATTAAAT-ATATATCTTAAATCTTAATTGAAATATGATTTATTGTTTGTATC
* * * * *
18749970 AAATTGAATTGCAGGTTTGGATTTTTGTAAACTTATTG-TTCACCATTTGCATACTA-ATT
128 AAACTGAATAGCAGGTTTGGATTTTTGCAAACTTATAGCCT-ACCATTTGCATAC-AGA-T
18750029 ACCTTAGG
1 ACCTTAGG
18750037 AAAGAGACAA
Statistics
Matches: 173, Mismatches: 15, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
184 1 0.01
185 68 0.39
186 3 0.02
187 26 0.15
188 23 0.13
189 52 0.30
ACGTcount: A:0.32, C:0.09, G:0.15, T:0.44
Consensus pattern (185 bp):
ACCTTAGGGTTTAGTGACAAATAATTTTTTATTGAATTATTTGAAACTGTGTATGTCATTAAATT
ATTAAAATATGATTAAATATATATCTTAAATCTTAATTGAAATATGATTTATTGTTTGTATCAAA
CTGAATAGCAGGTTTGGATTTTTGCAAACTTATAGCCTACCATTTGCATACAGAT
Found at i:18750319 original size:184 final size:183
Alignment explanation
Indices: 18750002--18750557 Score: 816
Period size: 184 Copynumber: 3.0 Consensus size: 183
18749992 TTTTGTAAAC
** * * *
18750002 TTATTGTTCACCATTTGCATACTAATTACCTTAGGAAAGAGACAAATTAGTTCCTATTTTGGATT
1 TTATTGTTTGCCATTT-CATATTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATT
* * *
18750067 ATTGTTTGGTTATTGTCTGCCATATGCATGATACTATTTTGGATTAAAGTGCATGATTATTATTT
65 ATTGTTTGGTTATTGTATGCCATGTGCATGATACTATTTTGGATTAAAGTGCATGATTATTGTTT
* * *
18750132 GGTTATTATACATGA-AAGAAATGGATTTTTTGTGTTAAATTGTTTTTGTATTGG
130 GGTTATTGTACATGACAA-AAATGAATTTTTTGTGTTAAATTATTTTTGTATTGG
*
18750186 TTATTGTTTGCCATTTTCATATTAATTGCCTTAGGAAAGAGACAAATCAATTCCTATTTTGGATT
1 TTATTGTTTGCCA-TTTCATATTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATT
* * *
18750251 ATTGTTTGGCTATTGTATGTCATGTGCATGATACTATTTTGGATTAAAGTGCATCATTATTGTTT
65 ATTGTTTGGTTATTGTATGCCATGTGCATGATACTATTTTGGATTAAAGTGCATGATTATTGTTT
*
18750316 GGTTATTGTACATGACAAAAATGAATTTTTTTTGTGTTAAATTATTTTTGTATTGA
130 GGTTATTGTACATGACAAAAATGAA--TTTTTTGTGTTAAATTATTTTTGTATTGG
*
18750372 TTATTGTCTGCC----CATATTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATTA
1 TTATTGTTTGCCATTTCATATTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATTA
* * * * *
18750433 TTGTTTGGTTATTGTTTGCCATGTGCATGATACTGTTTCGAATTAAAGTGCATGACTATTGTTTG
66 TTGTTTGGTTATTGTATGCCATGTGCATGATACTATTTTGGATTAAAGTGCATGATTATTGTTTG
* *
18750498 GTTATTGTACACGACAAAAATGAATTTTTTGTGTTAAATTATTTTTGTATGGG
131 GTTATTGTACATGACAAAAATGAATTTTTTGTGTTAAATTATTTTTGTATTGG
18750551 TTATTGT
1 TTATTGT
18750558 CTACCATTGC
Statistics
Matches: 339, Mismatches: 29, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
179 34 0.10
181 128 0.38
184 134 0.40
185 5 0.01
186 38 0.11
ACGTcount: A:0.27, C:0.10, G:0.18, T:0.45
Consensus pattern (183 bp):
TTATTGTTTGCCATTTCATATTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATTA
TTGTTTGGTTATTGTATGCCATGTGCATGATACTATTTTGGATTAAAGTGCATGATTATTGTTTG
GTTATTGTACATGACAAAAATGAATTTTTTGTGTTAAATTATTTTTGTATTGG
Found at i:18750458 original size:181 final size:180
Alignment explanation
Indices: 18750019--18750559 Score: 807
Period size: 181 Copynumber: 3.0 Consensus size: 180
18750009 TCACCATTTG
* * * *
18750019 CATACTAATTACCTTAGGAAAGAGACAAATTAGTTCCTATTTTGGATTATTGTTTGGTTATTGTC
1 CATATTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATTATTGTTTGGTTATTGTA
* * *
18750084 TGCCATATGCATGATACTATTTTGGATTAAAGTGCATGATTATTATTTGGTTATTATACATGA-A
66 TGCCATGTGCATGATACTATTTTGGATTAAAGTGCATGATTATTGTTTGGTTATTGTACATGACA
* * *
18750148 AGAAATGGATTTTTTGTGTTAAATTGTTTTTGTATTGGTTATTGTTTGCCATTTT
131 A-AAATGAATTTTTTGTGTTAAATTATTTTTGTATTGGTTATTGTCTGCC----T
* *
18750203 CATATTAATTGCCTTAGGAAAGAGACAAATCAATTCCTATTTTGGATTATTGTTTGGCTATTGTA
1 CATATTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATTATTGTTTGGTTATTGTA
* *
18750268 TGTCATGTGCATGATACTATTTTGGATTAAAGTGCATCATTATTGTTTGGTTATTGTACATGACA
66 TGCCATGTGCATGATACTATTTTGGATTAAAGTGCATGATTATTGTTTGGTTATTGTACATGACA
*
18750333 AAAATGAATTTTTTTTGTGTTAAATTATTTTTGTATTGATTATTGTCTGCC-
131 AAAATGAA--TTTTTTGTGTTAAATTATTTTTGTATTGGTTATTGTCTGCCT
*
18750384 CATATTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATTATTGTTTGGTTATTGTT
1 CATATTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATTATTGTTTGGTTATTGTA
* * * * *
18750449 TGCCATGTGCATGATACTGTTTCGAATTAAAGTGCATGACTATTGTTTGGTTATTGTACACGACA
66 TGCCATGTGCATGATACTATTTTGGATTAAAGTGCATGATTATTGTTTGGTTATTGTACATGACA
*
18750514 AAAATGAATTTTTTGTGTTAAATTATTTTTGTATGGGTTATTGTCT
131 AAAATGAATTTTTTGTGTTAAATTATTTTTGTATTGGTTATTGTCT
18750560 ACCATTGCCT
Statistics
Matches: 327, Mismatches: 27, Indels: 11
0.90 0.07 0.03
Matches are distributed among these distances:
179 36 0.11
181 128 0.39
184 123 0.38
185 2 0.01
186 38 0.12
ACGTcount: A:0.27, C:0.10, G:0.18, T:0.45
Consensus pattern (180 bp):
CATATTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATTATTGTTTGGTTATTGTA
TGCCATGTGCATGATACTATTTTGGATTAAAGTGCATGATTATTGTTTGGTTATTGTACATGACA
AAAATGAATTTTTTGTGTTAAATTATTTTTGTATTGGTTATTGTCTGCCT
Found at i:18753956 original size:26 final size:26
Alignment explanation
Indices: 18753895--18754001 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
18753885 TGAAATTCCA
18753895 ATCATGGAACATTTACCTAA-CCATT
1 ATCATGGAACATTTACCTAACCCATT
*
18753920 ATCATGGAACATTTACCTAACCTATT
1 ATCATGGAACATTTACCTAACCCATT
* *
18753946 ATCATGAAACATTTACCTAGCCCATT
1 ATCATGGAACATTTACCTAACCCATT
18753972 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
18753998 ATCA
1 ATCA
18754002 ATTTGTATCA
Statistics
Matches: 75, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
25 20 0.27
26 55 0.73
ACGTcount: A:0.36, C:0.25, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:18755681 original size:48 final size:48
Alignment explanation
Indices: 18755619--18755747 Score: 170
Period size: 48 Copynumber: 2.7 Consensus size: 48
18755609 AACATACTAT
* *
18755619 TTGTGGACAAGCCACCACATAATTACCGATAAACA-ATCAAATAACACA
1 TTGTGGACAAGCCACCACATAATTGCCGATAAACAGCT-AAATAACACA
* * * *
18755667 TTGTGGACAAGCCACTACATAATTGTCGATAAACGGCTAGATAACACA
1 TTGTGGACAAGCCACCACATAATTGCCGATAAACAGCTAAATAACACA
* *
18755715 TTGTGGACAAACCACCACATAATTGCCAATAAA
1 TTGTGGACAAGCCACCACATAATTGCCGATAAA
18755748 GGCCACATAA
Statistics
Matches: 70, Mismatches: 10, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
48 69 0.99
49 1 0.01
ACGTcount: A:0.42, C:0.23, G:0.14, T:0.21
Consensus pattern (48 bp):
TTGTGGACAAGCCACCACATAATTGCCGATAAACAGCTAAATAACACA
Found at i:18755754 original size:21 final size:22
Alignment explanation
Indices: 18755729--18755779 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
18755719 GGACAAACCA
18755729 CCACATAATTGCCA-ATAAA-GG
1 CCACATAATTG-CAGATAAACGG
*
18755750 CCACATAATTGCAGATAAACTG
1 CCACATAATTGCAGATAAACGG
18755772 CCACATAA
1 CCACATAA
18755780 CTTCTACCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 2 0.07
21 16 0.59
22 9 0.33
ACGTcount: A:0.43, C:0.25, G:0.12, T:0.20
Consensus pattern (22 bp):
CCACATAATTGCAGATAAACGG
Found at i:18756064 original size:6 final size:6
Alignment explanation
Indices: 18756050--18756094 Score: 54
Period size: 6 Copynumber: 7.3 Consensus size: 6
18756040 GAGATCTACA
* * *
18756050 CATACAT CATAAT CATAAC CATAAT CAGAAT CACAAT CATAAT CA
1 CATA-AT CATAAT CATAAT CATAAT CATAAT CATAAT CATAAT CA
18756095 CATCAATTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
6 29 0.88
7 4 0.12
ACGTcount: A:0.49, C:0.24, G:0.02, T:0.24
Consensus pattern (6 bp):
CATAAT
Found at i:18759506 original size:21 final size:21
Alignment explanation
Indices: 18759450--18759507 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
18759440 CAAGTGATTT
18759450 CCCTAACTCAGCAAGAGACTA
1 CCCTAACTCAGCAAGAGACTA
* * *
18759471 CCCCAGCTCAACAAGAGACTA
1 CCCTAACTCAGCAAGAGACTA
* *
18759492 TCCTAATTCAGCAAGA
1 CCCTAACTCAGCAAGA
18759508 AGTTGCCCCA
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.38, C:0.33, G:0.14, T:0.16
Consensus pattern (21 bp):
CCCTAACTCAGCAAGAGACTA
Found at i:18762805 original size:15 final size:15
Alignment explanation
Indices: 18762773--18762822 Score: 59
Period size: 17 Copynumber: 3.3 Consensus size: 15
18762763 AGAAATCTAA
18762773 AGAATATATAT-T-T
1 AGAATATATATATAT
*
18762786 TGAATATATATATAT
1 AGAATATATATATAT
18762801 AGAATCAATATATATAT
1 AGAAT--ATATATATAT
18762818 AGAAT
1 AGAAT
18762823 CTTACTCTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
13 10 0.32
14 1 0.03
15 5 0.16
17 15 0.48
ACGTcount: A:0.50, C:0.02, G:0.08, T:0.40
Consensus pattern (15 bp):
AGAATATATATATAT
Found at i:18762811 original size:17 final size:17
Alignment explanation
Indices: 18762791--18762823 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
18762781 TATTTTGAAT
18762791 ATATATATATAGAATCA
1 ATATATATATAGAATCA
18762808 ATATATATATAGAATC
1 ATATATATATAGAATC
18762824 TTACTCTATG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.36
Consensus pattern (17 bp):
ATATATATATAGAATCA
Found at i:18766999 original size:50 final size:48
Alignment explanation
Indices: 18766930--18767026 Score: 115
Period size: 48 Copynumber: 2.0 Consensus size: 48
18766920 TGGCTTCGAG
* *
18766930 CCATGATATTGGCACTTCAG-GTGTGAATGATACCTTGATTTGGCTACGGA
1 CCATGATATAGGCACTTCAGAGAG-G-A-GATACCTTGATTTGGCTACGGA
* * *
18766980 CCATGGTATAGGCATTTCAGAGAGGAGTTACCTTGATTTGGCTACGG
1 CCATGATATAGGCACTTCAGAGAGGAGATACCTTGATTTGGCTACGG
18767027 GCTATAGTGT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
48 20 0.49
49 1 0.02
50 18 0.44
51 2 0.05
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.31
Consensus pattern (48 bp):
CCATGATATAGGCACTTCAGAGAGGAGATACCTTGATTTGGCTACGGA
Found at i:18767023 original size:48 final size:47
Alignment explanation
Indices: 18766960--18767086 Score: 146
Period size: 47 Copynumber: 2.7 Consensus size: 47
18766950 GTGTGAATGA
* * *
18766960 TACCTTGATTTGGCTACGGACCATGGTATAGGCATTTCAGAGAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGCA-CTCAGAGAGAAGT
* * * * * * *
18767008 TACCTTGATTTGGCTACGGGCTATAGTGTAGGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGCACTCAGAGAGAAGT
*
18767055 TACCTTGATTTGGTTACGGGCCATGGTATAGG
1 TACCTTGATTTGGCTACGGGCCATGGTATAGG
18767087 TACTTATCAA
Statistics
Matches: 65, Mismatches: 14, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
47 36 0.55
48 29 0.45
ACGTcount: A:0.22, C:0.17, G:0.30, T:0.31
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGCACTCAGAGAGAAGT
Done.