Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 63 of 295
Found at i:18771177 original size:28 final size:29
Alignment explanation
Indices: 18771056--18771280 Score: 215
Period size: 29 Copynumber: 7.8 Consensus size: 29
18771046 GTGTGCTAAA
* * *
18771056 TGATGGTCGTAACCATCCATTTTCATAAT
1 TGATGGTCGTCACCATCCCTTTTCATAGT
* *
18771085 CGATGGTCGTCACAATCCCTTTTCATAAG-
1 TGATGGTCGTCACCATCCCTTTTCAT-AGT
* * ** * *
18771114 CGATGGTTGAAACTATCCCTTTTCATATT
1 TGATGGTCGTCACCATCCCTTTTCATAGT
* *
18771143 TGATGGTGGTCACCATCTC-TTTCATAGT
1 TGATGGTCGTCACCATCCCTTTTCATAGT
*
18771171 TGGTGGTCGTCACCATCCCTTTTCATA-T
1 TGATGGTCGTCACCATCCCTTTTCATAGT
** ** * *
18771199 TCGATATTC-AAACTATCCCTTTTCATATT
1 T-GATGGTCGTCACCATCCCTTTTCATAGT
*
18771228 TGATGGTCGCCACCATCCCTTTTCATAGT
1 TGATGGTCGTCACCATCCCTTTTCATAGT
18771257 TGATGGTCGTCACCATCCCTTTTC
1 TGATGGTCGTCACCATCCCTTTTC
18771281 TTTAATCGAT
Statistics
Matches: 157, Mismatches: 33, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
28 47 0.30
29 109 0.69
30 1 0.01
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (29 bp):
TGATGGTCGTCACCATCCCTTTTCATAGT
Found at i:18771180 original size:86 final size:86
Alignment explanation
Indices: 18771056--18771280 Score: 308
Period size: 86 Copynumber: 2.6 Consensus size: 86
18771046 GTGTGCTAAA
** * * * * *
18771056 TGATGGTCGTAACCATCCATTTTCATAATCGATGGTCGTCACAATCCCTTTTCATAAGCGATGGT
1 TGATGGTCGCCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAAGCGAT-AT
*
18771121 TGAAACTATCCCTTTTCATATT
65 TCAAACTATCCCTTTTCATATT
* * * * **
18771143 TGATGGTGGTCACCATCTC-TTTCATAGTTGGTGGTCGTCACCATCCCTTTTCATATTCGATATT
1 TGATGGTCGCCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAAGCGATATT
18771207 CAAACTATCCCTTTTCATATT
66 CAAACTATCCCTTTTCATATT
18771228 TGATGGTCGCCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTC
1 TGATGGTCGCCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTC
18771281 TTTAATCGAT
Statistics
Matches: 121, Mismatches: 16, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
85 38 0.31
86 68 0.56
87 15 0.12
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (86 bp):
TGATGGTCGCCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTTTCATAAGCGATATT
CAAACTATCCCTTTTCATATT
Found at i:18771195 original size:57 final size:56
Alignment explanation
Indices: 18771056--18771278 Score: 182
Period size: 57 Copynumber: 3.9 Consensus size: 56
18771046 GTGTGCTAAA
** * * * *
18771056 TGATGGTCGTAACCATCCATTTTCATAATCGATGGTCGTCACAATCCCTTTTCATAAG-
1 TGATGGTCGCCACCATCCCTTTTCATATTTGATGGT-GTCACCATCCC-TTTCAT-AGT
* * ** * *
18771114 CGATGGTTGAAACTATCCCTTTTCATATTTGATGGTGGTCACCATCTCTTTCATAGT
1 TGATGGTCGCCACCATCCCTTTTCATATTTGATGGT-GTCACCATCCCTTTCATAGT
* * * * * *
18771171 TGGTGGTCGTCACCATCCCTTTTCATATTCGAT-AT-TCAAACTATCCCTTTTCATATT
1 TGATGGTCGCCACCATCCCTTTTCATATTTGATGGTGTC--ACCATCCC-TTTCATAGT
*
18771228 TGATGGTCGCCACCATCCCTTTTCATAGTTGATGGTCGTCACCATCCCTTT
1 TGATGGTCGCCACCATCCCTTTTCATATTTGATGGT-GTCACCATCCCTTT
18771279 TCTTTAATCG
Statistics
Matches: 131, Mismatches: 27, Indels: 15
0.76 0.16 0.09
Matches are distributed among these distances:
54 2 0.02
56 9 0.07
57 72 0.55
58 46 0.35
60 2 0.02
ACGTcount: A:0.21, C:0.26, G:0.15, T:0.38
Consensus pattern (56 bp):
TGATGGTCGCCACCATCCCTTTTCATATTTGATGGTGTCACCATCCCTTTCATAGT
Found at i:18773248 original size:26 final size:25
Alignment explanation
Indices: 18773219--18773276 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 25
18773209 TAGCCGCCAG
18773219 GGCTTTCTAGAAAAACTAGCCACTAA
1 GGCTTTCTAG-AAAACTAGCCACTAA
* *
18773245 GGCTTTTCTAGATATCTAGCCACTAA
1 GGC-TTTCTAGAAAACTAGCCACTAA
18773271 GGCTTT
1 GGCTTT
18773277 TCAGGAAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 3 0.10
26 19 0.66
27 7 0.24
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31
Consensus pattern (25 bp):
GGCTTTCTAGAAAACTAGCCACTAA
Found at i:18773766 original size:13 final size:13
Alignment explanation
Indices: 18773748--18773772 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18773738 TGAAAACTAA
18773748 AAATTAACTAAGT
1 AAATTAACTAAGT
18773761 AAATTAACTAAG
1 AAATTAACTAAG
18773773 GAAAATAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.28
Consensus pattern (13 bp):
AAATTAACTAAGT
Found at i:18777898 original size:27 final size:26
Alignment explanation
Indices: 18777868--18777919 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
18777858 TGGATATGAA
*
18777868 GGGAGCTATAAGAAACTCAAACAATGT
1 GGGAGCTATAAAAAACTCAAA-AATGT
* *
18777895 GGGAGCTTTAAAAAATTCAAAAATG
1 GGGAGCTATAAAAAACTCAAAAATG
18777920 AATGAAGCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.46, C:0.12, G:0.21, T:0.21
Consensus pattern (26 bp):
GGGAGCTATAAAAAACTCAAAAATGT
Found at i:18783146 original size:18 final size:18
Alignment explanation
Indices: 18783110--18783151 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
18783100 AGCCAAAAAA
18783110 TTCAA-CCAAAAGTGCTT
1 TTCAAGCCAAAAGTGCTT
* *
18783127 TTCAAGCCAAATGTGTTT
1 TTCAAGCCAAAAGTGCTT
*
18783145 TTTAAGC
1 TTCAAGC
18783152 ACTACTAAAC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
17 5 0.24
18 16 0.76
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (18 bp):
TTCAAGCCAAAAGTGCTT
Found at i:18785529 original size:14 final size:15
Alignment explanation
Indices: 18785496--18785534 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
18785486 AATAGTTCAT
18785496 ATGATCAATTATAAGC
1 ATGATCAATTAT-AGC
*
18785512 ATGATCAATTGT-GC
1 ATGATCAATTATAGC
18785526 ATGATCAAT
1 ATGATCAAT
18785535 ATCCATATCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
16 11 0.50
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (15 bp):
ATGATCAATTATAGC
Found at i:18787924 original size:21 final size:21
Alignment explanation
Indices: 18787899--18787952 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
18787889 GTGGAAATCT
* *
18787899 CACACGCCCGTGTGGCTAAGG
1 CACACGACCGTGTGACTAAGG
* *
18787920 GACACGACCGTCTGACTAAGG
1 CACACGACCGTGTGACTAAGG
*
18787941 CACACGTCCGTG
1 CACACGACCGTG
18787953 CGAAAATCAA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.22, C:0.33, G:0.30, T:0.15
Consensus pattern (21 bp):
CACACGACCGTGTGACTAAGG
Found at i:18798506 original size:48 final size:48
Alignment explanation
Indices: 18798395--18798584 Score: 170
Period size: 48 Copynumber: 3.9 Consensus size: 48
18798385 TAAGATGCCG
* * * * *
18798395 ATGTCCCAGACATGGTCTTACATTGGCTCTCATATATCG-GTGTCGATGCC
1 ATGTCCCAAACATGGTCTTACACTAGCTCTC--ATATCGAG-GCCGATGAC
* * * * *
18798445 ATGTTCCAAACATGGTCATACACTGGCTCGCATGTCGAGGCCGATGAC
1 ATGTCCCAAACATGGTCTTACACTAGCTCTCATATCGAGGCCGATGAC
* ** * *
18798493 ATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGTC
1 ATGTCCCAAACATGGTCTTACACTAGCTCTCATATCGAGGCCGATGAC
*
18798541 ATGTTCCAAACATGGTCTTACACTAG-T-TCATATGTCGAGGCCGA
1 ATGTCCCAAACATGGTCTTACACTAGCTCTCATA--TCGAGGCCGA
18798585 GGCCGATGCC
Statistics
Matches: 114, Mismatches: 23, Indels: 8
0.79 0.16 0.06
Matches are distributed among these distances:
46 5 0.04
47 1 0.01
48 81 0.71
49 1 0.01
50 26 0.23
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (48 bp):
ATGTCCCAAACATGGTCTTACACTAGCTCTCATATCGAGGCCGATGAC
Found at i:18798631 original size:102 final size:102
Alignment explanation
Indices: 18798480--18798666 Score: 302
Period size: 102 Copynumber: 1.8 Consensus size: 102
18798470 GCTCGCATGT
* * *
18798480 CGAGGCCGATGACATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATGTCATGT
1 CGAGGCCGATGACATGTCCCAGACATGGCCTTAAACTAGCTCTCATATAAATGCCGATGCCATGT
* **
18798545 TCCAAACATGGTCTTACACTAGTTCATATGTCGAGGC
66 TACAAACACAGTCTTACACTAGTTCATATGTCGAGGC
* *
18798582 CGAGGCCGATGCCATGTCCCAGACATGGCCTTAAACTAGCTCTTATATAAATGCCGATGCCATGT
1 CGAGGCCGATGACATGTCCCAGACATGGCCTTAAACTAGCTCTCATATAAATGCCGATGCCATGT
18798647 TACAAACACAGTCTTACACT
66 TACAAACACAGTCTTACACT
18798667 GGCTCACATA
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
102 77 1.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.26
Consensus pattern (102 bp):
CGAGGCCGATGACATGTCCCAGACATGGCCTTAAACTAGCTCTCATATAAATGCCGATGCCATGT
TACAAACACAGTCTTACACTAGTTCATATGTCGAGGC
Found at i:18798638 original size:54 final size:54
Alignment explanation
Indices: 18798480--18798638 Score: 159
Period size: 54 Copynumber: 3.1 Consensus size: 54
18798470 GCTCGCATGT
*
18798480 CGAGGCCGATGACATGTCCCAGACATGGTCTTACACTAGCTCTCATATAAAT--
1 CGAGGCCGATGACATGTCCCAGACATGGTCTTACACTAGCTCTTATATAAATGC
* * * * * * ** *
18798532 ----GCCGATGTCATGTTCCAAACATGGTCTTACACTAGTTCATATGTCGAGGC
1 CGAGGCCGATGACATGTCCCAGACATGGTCTTACACTAGCTCTTATATAAATGC
* * *
18798582 CGAGGCCGATGCCATGTCCCAGACATGGCCTTAAACTAGCTCTTATATAAATGC
1 CGAGGCCGATGACATGTCCCAGACATGGTCTTACACTAGCTCTTATATAAATGC
18798636 CGA
1 CGA
18798639 TGCCATGTTA
Statistics
Matches: 80, Mismatches: 21, Indels: 10
0.72 0.19 0.09
Matches are distributed among these distances:
48 38 0.47
54 42 0.52
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (54 bp):
CGAGGCCGATGACATGTCCCAGACATGGTCTTACACTAGCTCTTATATAAATGC
Found at i:18801261 original size:21 final size:21
Alignment explanation
Indices: 18801235--18801278 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
18801225 CCATAATATG
* *
18801235 ATTTTTGGACTGAATTGGACA
1 ATTTTTGGACTAAATTGAACA
18801256 ATTTTTGGACTAAATTGAACA
1 ATTTTTGGACTAAATTGAACA
18801277 AT
1 AT
18801279 GTGAGTATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (21 bp):
ATTTTTGGACTAAATTGAACA
Found at i:18813871 original size:26 final size:25
Alignment explanation
Indices: 18813835--18813918 Score: 132
Period size: 26 Copynumber: 3.2 Consensus size: 25
18813825 CATGAAATTC
18813835 TTATCATGAAACATTTACCTAACTCA
1 TTATCATGAAACATTTACCTAAC-CA
18813861 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAA-CCA
*
18813887 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACC-A
18813913 TTATCA
1 TTATCA
18813919 ATTTGTATCA
Statistics
Matches: 55, Mismatches: 1, Indels: 4
0.92 0.02 0.07
Matches are distributed among these distances:
25 2 0.04
26 52 0.95
27 1 0.02
ACGTcount: A:0.37, C:0.24, G:0.05, T:0.35
Consensus pattern (25 bp):
TTATCATGAAACATTTACCTAACCA
Found at i:18814746 original size:30 final size:29
Alignment explanation
Indices: 18814712--18814817 Score: 81
Period size: 30 Copynumber: 3.5 Consensus size: 29
18814702 TTAAATTTCG
18814712 ATTTAGTCCTTATTTATTTATTGTATTACA
1 ATTTAGTCCTTATTTATTTATT-TATTACA
* * * *
18814742 ATTTAGCCCCTTTTTTATTTATTTATTTCG
1 ATTTAG-TCCTTATTTATTTATTTATTACA
* **
18814772 ATTTA-TCCTT-TTAATTTCATTTAAGTTATG
1 ATTTAGTCCTTATTTATTT-ATTT-A-TTACA
18814802 ATTTAGTCCTTTATTT
1 ATTTAGTCC-TTATTT
18814818 TTCACCCTTT
Statistics
Matches: 60, Mismatches: 9, Indels: 11
0.75 0.11 0.14
Matches are distributed among these distances:
27 6 0.10
28 8 0.13
29 1 0.02
30 24 0.40
31 17 0.28
32 2 0.03
33 2 0.03
ACGTcount: A:0.23, C:0.12, G:0.07, T:0.58
Consensus pattern (29 bp):
ATTTAGTCCTTATTTATTTATTTATTACA
Found at i:18814874 original size:4 final size:4
Alignment explanation
Indices: 18814843--18814948 Score: 60
Period size: 4 Copynumber: 26.8 Consensus size: 4
18814833 ATTGCTTCCT
**
18814843 TTTA TTT- TTTA TTT- TTTA TTTA CATA TTTA TTTA -TTA TTCCT- TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT--TA TTTA
* * * * * * *
18814889 TGTTA TTCA TTTA CTTG CTTA TTTA TTTA CTTA TTTA TATA -TTA TTCA
1 T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
18814937 TTTA TTTTA TTT
1 TTTA -TTTA TTT
18814949 TAATTCCTTT
Statistics
Matches: 77, Mismatches: 16, Indels: 18
0.69 0.14 0.16
Matches are distributed among these distances:
3 12 0.16
4 54 0.70
5 10 0.13
6 1 0.01
ACGTcount: A:0.23, C:0.08, G:0.02, T:0.68
Consensus pattern (4 bp):
TTTA
Found at i:18814941 original size:19 final size:19
Alignment explanation
Indices: 18814919--18814961 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
18814909 ATTTATTTAC
18814919 TTATTTATATATT-ATTCAT
1 TTATTT-TATATTAATTCAT
* *
18814938 TTATTTTATTTTAATTCCT
1 TTATTTTATATTAATTCAT
18814957 TTATT
1 TTATT
18814962 CATTTATTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (19 bp):
TTATTTTATATTAATTCAT
Found at i:18814980 original size:23 final size:22
Alignment explanation
Indices: 18814891--18814977 Score: 63
Period size: 23 Copynumber: 3.9 Consensus size: 22
18814881 TCCTTTTATG
* *
18814891 TTATTCATTTACTTGCTTATTTAT
1 TTATT-ATTTATTTG-TTATTCAT
* *
18814915 TTACTTATTTATATATTATTCAT
1 TTA-TTATTTATTTGTTATTCAT
* *
18814938 TTA-T-TTTATTT-TAATTCCT
1 TTATTATTTATTTGTTATTCAT
18814957 TTATTCATTTATTTGTTATTC
1 TTATT-ATTTATTTGTTATTC
18814978 CTTCATTTTT
Statistics
Matches: 50, Mismatches: 8, Indels: 11
0.72 0.12 0.16
Matches are distributed among these distances:
19 9 0.18
20 7 0.14
21 1 0.02
22 7 0.14
23 15 0.30
24 9 0.18
25 2 0.04
ACGTcount: A:0.23, C:0.10, G:0.02, T:0.64
Consensus pattern (22 bp):
TTATTATTTATTTGTTATTCAT
Found at i:18814990 original size:23 final size:22
Alignment explanation
Indices: 18814933--18814990 Score: 62
Period size: 23 Copynumber: 2.5 Consensus size: 22
18814923 TTATATATTA
18814933 TTCATTTATTTTATTTTAATTCC
1 TTCATTT-TTTTATTTTAATTCC
* ** *
18814956 TTTATTCATTTATTTGTTATTCC
1 TTCATTTTTTTATTT-TAATTCC
18814979 TTCATTTTTTTA
1 TTCATTTTTTTA
18814991 ATATTTAAAT
Statistics
Matches: 27, Mismatches: 7, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
22 7 0.26
23 20 0.74
ACGTcount: A:0.19, C:0.12, G:0.02, T:0.67
Consensus pattern (22 bp):
TTCATTTTTTTATTTTAATTCC
Found at i:18815092 original size:12 final size:11
Alignment explanation
Indices: 18815058--18815112 Score: 51
Period size: 11 Copynumber: 5.0 Consensus size: 11
18815048 GCCTGTATTA
18815058 TTATTA-TTAT
1 TTATTATTTAT
*
18815068 TTCATTATCTAT
1 TT-ATTATTTAT
18815080 TTATCTATTTAT
1 TTAT-TATTTAT
* *
18815092 TTATTACTTCT
1 TTATTATTTAT
18815103 TTATT-TTTAT
1 TTATTATTTAT
18815113 ACATATTTAA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
10 5 0.14
11 16 0.44
12 15 0.42
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (11 bp):
TTATTATTTAT
Found at i:18835469 original size:51 final size:50
Alignment explanation
Indices: 18835409--18835827 Score: 250
Period size: 51 Copynumber: 8.7 Consensus size: 50
18835399 CATCGTGGCG
**
18835409 AATCTTATCTCCCTGAAGTTGCAACGGAACAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTA-AAGTTACA
** * ** * *
18835460 AATCTTATCTCTTTGAAGTTGCAGTAGAGTAGATTGAAG--ATAG--A-A
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAAAGTTACA
* * *
18835505 AATCTTATTTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTA-AAGTTACA
** * * *
18835556 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAG--ATAG---CG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAAAGTTACA
* * * * * *
18835601 ATTCTTATTTCCCTGAAGTTGCAATAGAACAAATTAAAACTATAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTA-AAGTTACA
* * * * *
18835652 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAG--ATAG---CG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAAAGTTACA
* * * * * * * * * *
18835697 AATCTTATTTCCTTAAAGTTACAGTGG---AG--GAAA-TTGAAGATGCG
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAAAGTTACA
* * * *
18835741 AATCTTATTTCCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACGAGTTGCA
1 AATCTTATCT-CCCTGAAGTTGCAGTGGAACAGATTAAAGCTA-AAGTTACA
* *
18835793 AATCTTATCTCCCTGAAGTTGCAATGGAGCAGATT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATT
18835828 GAAGTAACAA
Statistics
Matches: 273, Mismatches: 70, Indels: 50
0.69 0.18 0.13
Matches are distributed among these distances:
40 2 0.01
41 2 0.01
42 2 0.01
44 12 0.04
45 100 0.37
46 1 0.00
47 2 0.01
48 12 0.04
49 3 0.01
50 4 0.01
51 119 0.44
52 14 0.05
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.30
Consensus pattern (50 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTAAAGTTACA
Found at i:18835524 original size:45 final size:45
Alignment explanation
Indices: 18835475--18835831 Score: 212
Period size: 45 Copynumber: 7.5 Consensus size: 45
18835465 TATCTCTTTG
* *
18835475 AAGTTGCAGTAGAGTAGATTGAAGATAGAAAATCTTATTTCCCTA
1 AAGTTGCAGTGGAGCAGATTGAAGATAGAAAATCTTATTTCCCTA
* * * * * *
18835520 AAGTTACAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTCCCTG
1 AAGTTGCAGTGGAGCAGATTGAAG--A-TAG--A-AAATCTTATTTCCCTA
* ** * *
18835571 AAGTTGCAGTGGAGTAGATTGAAGATAGCGATTCTTATTTCCCTG
1 AAGTTGCAGTGGAGCAGATTGAAGATAGAAAATCTTATTTCCCTA
* * * * * * *
18835616 AAGTTGCAATAGAACAAATTAAAACTATAAGTTACAAATCTTATCTCCCTA
1 AAGTTGCAGTGGAGCAGATT-GAA-GAT-AG--A-AAATCTTATTTCCCTA
** *
18835667 AAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCTTA
1 AAGTTGCAGTGGAGCAGATTGAAGATAGAAAATCTTATTTCCCTA
* * * ** *
18835712 AAGTTACAGTGGAGGAAATTGAAGAT-GCGAATCTTATTTCCCCTG
1 AAGTTGCAGTGGAGCAGATTGAAGATAGAAAATCTTATTT-CCCTA
* * * * * *
18835757 AAGTTGTAGTGGAACAGATTAAAGCTACGAGTTGCAAATCTTATCTCCCTG
1 AAGTTGCAGTGGAGCAGATTGAAGATA-GA-----AAATCTTATTTCCCTA
*
18835808 AAGTTGCAATGGAGCAGATTGAAG
1 AAGTTGCAGTGGAGCAGATTGAAG
18835832 TAACAAATTC
Statistics
Matches: 234, Mismatches: 58, Indels: 34
0.72 0.18 0.10
Matches are distributed among these distances:
44 13 0.06
45 105 0.45
46 2 0.01
47 4 0.02
48 8 0.03
49 3 0.01
50 3 0.01
51 87 0.37
52 9 0.04
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (45 bp):
AAGTTGCAGTGGAGCAGATTGAAGATAGAAAATCTTATTTCCCTA
Found at i:18835534 original size:96 final size:96
Alignment explanation
Indices: 18835406--18835724 Score: 449
Period size: 96 Copynumber: 3.3 Consensus size: 96
18835396 AGCCATCGTG
* * * *
18835406 GCGAATCTTATCTCCCTGAAGTTGCAACGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTC
1 GCGAATCTTATTTCCCTAAAGTTACAATGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTC
** *
18835471 TTTGAAGTTGCAGTAGAGTAGATTGAAGATA
66 CCTGAAGTTGCAGTGGAGTAGATTGAAGATA
** *
18835502 GAAAATCTTATTTCCCTAAAGTTACAGTGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTC
1 GCGAATCTTATTTCCCTAAAGTTACAATGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTC
18835567 CCTGAAGTTGCAGTGGAGTAGATTGAAGATA
66 CCTGAAGTTGCAGTGGAGTAGATTGAAGATA
* * * * * * *
18835598 GCGATTCTTATTTCCCTGAAGTTGCAATAGAACAAATTAAAACTATAAGTTACAAATCTTATCTC
1 GCGAATCTTATTTCCCTAAAGTTACAATGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTC
* *
18835663 CCTAAAGTTGCAGTGGAGCAGATTGAAGATA
66 CCTGAAGTTGCAGTGGAGTAGATTGAAGATA
* *
18835694 GCGAATCTTATTTCCTTAAAGTTACAGTGGA
1 GCGAATCTTATTTCCCTAAAGTTACAATGGA
18835725 GGAAATTGAA
Statistics
Matches: 195, Mismatches: 28, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
96 195 1.00
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.30
Consensus pattern (96 bp):
GCGAATCTTATTTCCCTAAAGTTACAATGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTC
CCTGAAGTTGCAGTGGAGTAGATTGAAGATA
Found at i:18835733 original size:141 final size:141
Alignment explanation
Indices: 18835556--18835831 Score: 383
Period size: 141 Copynumber: 2.0 Consensus size: 141
18835546 ACAAGTTACA
* * * * *
18835556 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAGCGATTCTTATTT-CCCTGAAGT
1 AATCTTATCTCCCTAAAGTTACAGTGGAGGAAATTGAAGAT-GCGAATCTTATTTCCCCTGAAGT
* *
18835620 TGCAATAGAACAAATTAAAACTATAAGTTACAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAGA
65 TGCAATAGAACAAATTAAAACTACAAGTTACAAATCTTATCTCCCTAAAGTTGCAATGGAGCAGA
18835685 TTGAAGATAGCG
130 TTGAAGATAGCG
* *
18835697 AATCTTATTTCCTTAAAGTTACAGTGGAGGAAATTGAAGATGCGAATCTTATTTCCCCTGAAGTT
1 AATCTTATCTCCCTAAAGTTACAGTGGAGGAAATTGAAGATGCGAATCTTATTTCCCCTGAAGTT
* * * * * * * *
18835762 GTAGTGGAACAGATTAAAGCTACGAGTTGCAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGAT
66 GCAATAGAACAAATTAAAACTACAAGTTACAAATCTTATCTCCCTAAAGTTGCAATGGAGCAGAT
18835827 TGAAG
131 TGAAG
18835832 TAACAAATTC
Statistics
Matches: 117, Mismatches: 17, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
140 12 0.10
141 105 0.90
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (141 bp):
AATCTTATCTCCCTAAAGTTACAGTGGAGGAAATTGAAGATGCGAATCTTATTTCCCCTGAAGTT
GCAATAGAACAAATTAAAACTACAAGTTACAAATCTTATCTCCCTAAAGTTGCAATGGAGCAGAT
TGAAGATAGCG
Found at i:18835808 original size:192 final size:190
Alignment explanation
Indices: 18835409--18835817 Score: 452
Period size: 192 Copynumber: 2.1 Consensus size: 190
18835399 CATCGTGGCG
** * * **
18835409 AATCTTATCTCCCTGAAGTTGCAACGGAACAGATTAAAGCTACAAGTTACAAATCTTATCTCTTT
1 AATCTTATCTCCCTGAAGTTGCAATAGAACAAATTAAAACTACAAGTTACAAATCTTATCTCCCT
* *
18835474 GAAGTTGCAGTAGAGTAGATTGAAGATAGAAAATCTTATTTCCCTAAAGTTACAGTGGAACAGAT
66 AAAGTTGCAGTAGAGCAGATTGAAGATAGAAAATCTTATTTCCCTAAAGTTACAGTGG-A-AGA-
* * ** *
18835539 TAAAGCTACAAGTTACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGATAGCGAT
128 GAAA-CTACAAGATACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGATAGCGAT
* *
18835603 --TCTTATTTCCCTGAAGTTGCAATAGAACAAATTAAAACTATAAGTTACAAATCTTATCTCCCT
1 AATCTTATCTCCCTGAAGTTGCAATAGAACAAATTAAAACTACAAGTTACAAATCTTATCTCCCT
* ** *
18835666 AAAGTTGCAGTGGAGCAGATTGAAGATAGCGAATCTTATTTCCTTAAAGTTACAGTGG-AG-GAA
66 AAAGTTGCAGTAGAGCAGATTGAAGATAGAAAATCTTATTTCCCTAAAGTTACAGTGGAAGAGAA
** * * * * *
18835729 A-TTGAAGATGCGAATCTTATTTCCCCTGAAGTTGTAGTGGAACAGATTAAAGCTA-CGAGTT
131 ACTACAAGATACAAATCTTATCT-CCCTGAAGTTGCAGTGGAACAGATTAAAGATAGCGA--T
18835790 GCAAATCTTATCTCCCTGAAGTTGCAAT
1 ---AATCTTATCTCCCTGAAGTTGCAAT
18835818 GGAGCAGATT
Statistics
Matches: 180, Mismatches: 27, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
185 18 0.10
186 27 0.15
187 4 0.02
189 2 0.01
192 129 0.72
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.30
Consensus pattern (190 bp):
AATCTTATCTCCCTGAAGTTGCAATAGAACAAATTAAAACTACAAGTTACAAATCTTATCTCCCT
AAAGTTGCAGTAGAGCAGATTGAAGATAGAAAATCTTATTTCCCTAAAGTTACAGTGGAAGAGAA
ACTACAAGATACAAATCTTATCTCCCTGAAGTTGCAGTGGAACAGATTAAAGATAGCGAT
Found at i:18836055 original size:14 final size:14
Alignment explanation
Indices: 18836032--18836065 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
18836022 TGAACAAAAA
18836032 ATAACAAAATAAAT
1 ATAACAAAATAAAT
*
18836046 ATAACCAAATAAAT
1 ATAACAAAATAAAT
18836060 A-AACAA
1 ATAACAA
18836066 TCCAAAGTCC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.71, C:0.12, G:0.00, T:0.18
Consensus pattern (14 bp):
ATAACAAAATAAAT
Found at i:18836754 original size:4 final size:4
Alignment explanation
Indices: 18836729--18836828 Score: 53
Period size: 4 Copynumber: 24.8 Consensus size: 4
18836719 AATGTTTGCT
* ** *
18836729 TTTA TTTT TTTA TTTA CATA TTTA TTTA TTT- TTCCT- TTTA TTTTA TTCA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT--TA TTTA -TTTA TTTA
* * * * * *
18836778 TTTA CTTG CTTA TTTA TTTA CTTA TTTA TATA -TTA TTCA TTTA TTTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA -TTTA
18836826 TTT
1 TTT
18836829 TAATTCCTTT
Statistics
Matches: 72, Mismatches: 18, Indels: 12
0.71 0.18 0.12
Matches are distributed among these distances:
3 5 0.07
4 56 0.78
5 11 0.15
ACGTcount: A:0.22, C:0.08, G:0.01, T:0.69
Consensus pattern (4 bp):
TTTA
Found at i:18836791 original size:37 final size:36
Alignment explanation
Indices: 18836727--18836796 Score: 95
Period size: 37 Copynumber: 1.9 Consensus size: 36
18836717 AAAATGTTTG
* *
18836727 CTTTTATTTTTTTATTTACATATTTATTTATTTTTC
1 CTTTTATTTTTTCATTTACATACTTATTTATTTTTC
* *
18836763 CTTTTATTTTATTCATTTACTTGCTTATTTATTT
1 CTTTTATTTT-TTCATTTACATACTTATTTATTT
18836797 ACTTATTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
36 10 0.34
37 19 0.66
ACGTcount: A:0.19, C:0.10, G:0.01, T:0.70
Consensus pattern (36 bp):
CTTTTATTTTTTCATTTACATACTTATTTATTTTTC
Found at i:18836821 original size:19 final size:19
Alignment explanation
Indices: 18836799--18836841 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
18836789 ATTTATTTAC
18836799 TTATTTATATATT-ATTCAT
1 TTATTT-TATATTAATTCAT
* *
18836818 TTATTTTATTTTAATTCCT
1 TTATTTTATATTAATTCAT
18836837 TTATT
1 TTATT
18836842 CATTTATTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.26, C:0.07, G:0.00, T:0.67
Consensus pattern (19 bp):
TTATTTTATATTAATTCAT
Found at i:18836857 original size:23 final size:22
Alignment explanation
Indices: 18836770--18836864 Score: 70
Period size: 23 Copynumber: 4.3 Consensus size: 22
18836760 TTCCTTTTAT
* *
18836770 TTTATTCATTTACTTGCTTATTTA
1 TTTATT-ATTTATTTG-TTATTCA
* *
18836794 TTTACTTATTTATATATTATTCA
1 TTTA-TTATTTATTTGTTATTCA
* *
18836817 TTTA-T-TTTATTT-TAATTCC
1 TTTATTATTTATTTGTTATTCA
*
18836836 TTTATTCATTTATTTGTTATTCC
1 TTTATT-ATTTATTTGTTATTCA
18836859 TTTATT
1 TTTATT
18836865 TTTCTAATAT
Statistics
Matches: 58, Mismatches: 8, Indels: 11
0.75 0.10 0.14
Matches are distributed among these distances:
19 9 0.16
20 7 0.12
21 1 0.02
22 7 0.12
23 22 0.38
24 10 0.17
25 2 0.03
ACGTcount: A:0.22, C:0.11, G:0.02, T:0.65
Consensus pattern (22 bp):
TTTATTATTTATTTGTTATTCA
Found at i:18839820 original size:46 final size:46
Alignment explanation
Indices: 18839768--18839989 Score: 245
Period size: 46 Copynumber: 4.8 Consensus size: 46
18839758 TATTTGAGTA
*
18839768 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
18839814 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * * *
18839861 TCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
18839907 CCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
18839953 TCC-AAGCTCGTTGAGTTGAGTTCGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
18839990 GCGGGTTACA
Statistics
Matches: 147, Mismatches: 21, Indels: 16
0.80 0.11 0.09
Matches are distributed among these distances:
43 6 0.04
45 5 0.03
46 100 0.68
47 28 0.19
48 3 0.02
50 5 0.03
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:18839926 original size:93 final size:93
Alignment explanation
Indices: 18839767--18839935 Score: 275
Period size: 93 Copynumber: 1.8 Consensus size: 93
18839757 ATATTTGAGT
* *
18839767 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCAAACGTCCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTTG
18839832 AGTCCGAGTTCGTGAGATGTAACTAGGC
66 AGTCCGAGTTCGTGAGATGTAACTAGGC
* * * *
18839860 ATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTTG
*
18839925 AGTCTGAGTTC
66 AGTCCGAGTTC
18839936 ACTTATGGAT
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGTTG
AGTCCGAGTTCGTGAGATGTAACTAGGC
Found at i:18842884 original size:29 final size:28
Alignment explanation
Indices: 18842851--18842907 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
18842841 AAAAGTTCAA
*
18842851 AAAAATTATAATAAAATATTTTTAAAATT
1 AAAAATCATAA-AAAATATTTTTAAAATT
18842880 AAAAATCATAAAAAATATTTTTAAAATT
1 AAAAATCATAAAAAATATTTTTAAAATT
18842908 TTTAAAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 17 0.63
29 10 0.37
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (28 bp):
AAAAATCATAAAAAATATTTTTAAAATT
Found at i:18846758 original size:3 final size:3
Alignment explanation
Indices: 18846750--18846774 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
18846740 ATTCTATTAA
18846750 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
18846775 TTTTAGTACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:18849054 original size:12 final size:12
Alignment explanation
Indices: 18849034--18849069 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
18849024 AGGCTAAAAA
*
18849034 ATCAATTGAACT
1 ATCAGTTGAACT
18849046 ATCAGTTGAACT
1 ATCAGTTGAACT
*
18849058 AACAGTTGAACT
1 ATCAGTTGAACT
18849070 GGTTTTGAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.31
Consensus pattern (12 bp):
ATCAGTTGAACT
Found at i:18856092 original size:19 final size:18
Alignment explanation
Indices: 18856068--18856108 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 18
18856058 ATTATTTGAA
18856068 TATTGTATAACTTTTGAT-T
1 TATTGT-TAA-TTTTGATAT
18856087 TATTGTTAATTTTGATAT
1 TATTGTTAATTTTGATAT
18856105 TATT
1 TATT
18856109 TTAGAAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 7 0.33
18 8 0.38
19 6 0.29
ACGTcount: A:0.27, C:0.02, G:0.10, T:0.61
Consensus pattern (18 bp):
TATTGTTAATTTTGATAT
Found at i:18860087 original size:5 final size:5
Alignment explanation
Indices: 18860077--18860103 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
18860067 ATGAAAGATA
18860077 AAAAG AAAAG AAAAG AAAAG AAAAG AA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AA
18860104 GATATAACAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:18861839 original size:19 final size:19
Alignment explanation
Indices: 18861815--18861854 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
18861805 TGTGTCATCA
18861815 TAAATTCATAGGCATAACT
1 TAAATTCATAGGCATAACT
*
18861834 TAAATTTATAGGCATAACT
1 TAAATTCATAGGCATAACT
18861853 TA
1 TA
18861855 CACATTTCCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (19 bp):
TAAATTCATAGGCATAACT
Found at i:18869150 original size:40 final size:40
Alignment explanation
Indices: 18869073--18869296 Score: 267
Period size: 40 Copynumber: 5.5 Consensus size: 40
18869063 ACCCAAGTAT
* * *
18869073 CTTCGGGATTTAG-CCGAATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* * *
18869112 CTTCGGGTCTTAGCCCGGATATAGTCAGTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
18869152 CTTCGGGACTTAGCCCGAATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
18869192 CTTCGGGACTTAGCCTAGG-TATAG-CAACTACTCGCAAAAATGC
1 CTTCGGGACTTAGCC-CGGATATAGTC-ACTA---GCACAAATGC
* *
18869235 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
18869275 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
18869297 CATCTGAATA
Statistics
Matches: 159, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
39 12 0.08
40 111 0.70
41 2 0.01
42 2 0.01
43 32 0.20
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:18869258 original size:83 final size:80
Alignment explanation
Indices: 18869073--18869296 Score: 276
Period size: 83 Copynumber: 2.8 Consensus size: 80
18869063 ACCCAAGTAT
* * * *
18869073 CTTCGGGATTTAG-CCGAATATAG-CAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
1 CTTCGGGACTTAGCCCGAATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCAGGATATAG
* *
18869136 TCAGTAGCATAAATGC
65 TCACTAGCAAAAATGC
18869152 CTTCGGGACTTAGCCCGAATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCTAGG-TATAG
1 CTTCGGGACTTAGCCCGAATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCC-AGGATATAG
18869216 -CAACTACTCGCAAAAATGC
65 TC-ACTA---GCAAAAATGC
* * * *
18869235 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGAATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCAGGATAT
18869297 CATCTGAATA
Statistics
Matches: 127, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
79 13 0.10
80 45 0.35
81 3 0.02
82 2 0.02
83 64 0.50
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGAATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCAGGATATAGT
CACTAGCAAAAATGC
Found at i:18877240 original size:39 final size:39
Alignment explanation
Indices: 18877168--18877349 Score: 233
Period size: 39 Copynumber: 4.6 Consensus size: 39
18877158 ACCCAAGTAT
* * *
18877168 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAG-TACTAGCACAAATGC
* *
18877207 CTTCGGGTCTTAGCCCGGATATAGTAGTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTACTAGCACAAATGC
*
18877246 CTTCGGGACTTAGCCCGGATATAGCAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAG----TACTAGCACAAATGC
*
18877289 CTTCGGGACTTAGCCC-GATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGT-ACTAGCACAAATGC
18877328 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
18877350 CATCCGAATA
Statistics
Matches: 127, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
38 1 0.01
39 75 0.59
40 15 0.12
42 7 0.06
43 29 0.23
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (39 bp):
CTTCGGGACTTAGCCCGGATATAGTACTAGCACAAATGC
Found at i:18877301 original size:82 final size:79
Alignment explanation
Indices: 18877168--18877349 Score: 278
Period size: 82 Copynumber: 2.3 Consensus size: 79
18877158 ACCCAAGTAT
* *
18877168 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCC-GATATAGT
*
18877232 -AGTAGCACAAATGC
65 AACTAGCACAAATGC
18877246 CTTCGGGACTTAGCCCGGATATAGCAACTACTCGCACAAATGCCTTCGGGACTTAGCCCGATATA
1 CTTCGGGACTTAGCCCGGATATAGC-A--ACTCGCACAAATGCCTTCGGGACTTAGCCCGATATA
*
18877311 GTAACTTGCACAAATGC
63 GTAACTAGCACAAATGC
18877328 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
18877350 CATCCGAATA
Statistics
Matches: 95, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
78 12 0.13
79 11 0.12
80 1 0.01
81 8 0.08
82 63 0.66
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.24
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGACTTAGCCCGATATAGTA
ACTAGCACAAATGC
Found at i:18924916 original size:38 final size:39
Alignment explanation
Indices: 18924778--18924956 Score: 197
Period size: 40 Copynumber: 4.6 Consensus size: 39
18924768 ATGATGTCCG
* * * *
18924778 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCC
* *
18924817 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCC
1 GG-CTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCC
18924857 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCC
1 -GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
*
18924896 -GTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCC
*
18924934 GGGCTATGTCCCGAAGGCATTTG
1 -GGCTAAGTCCCGAAGGCATTTG
18924957 AACGAGAGCT
Statistics
Matches: 120, Mismatches: 11, Indels: 17
0.81 0.07 0.11
Matches are distributed among these distances:
37 5 0.04
38 28 0.23
39 32 0.27
40 45 0.38
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCC
Found at i:18924921 original size:77 final size:81
Alignment explanation
Indices: 18924774--18924956 Score: 227
Period size: 77 Copynumber: 2.3 Consensus size: 81
18924764 TTGAATGATG
*
18924774 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
18924838 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * *
18924853 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCC-G-TTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
18924913 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
18924931 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
18924957 AACGAGAGCT
Statistics
Matches: 91, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
76 1 0.01
77 37 0.41
78 16 0.18
79 19 0.21
80 18 0.20
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:18924973 original size:77 final size:77
Alignment explanation
Indices: 18924827--18924988 Score: 195
Period size: 77 Copynumber: 2.1 Consensus size: 77
18924817 GGACTAAGAT
* **
18924827 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAG-TACTAA
*
18924892 ATCC-GTTAAGTC
65 ATCCGGTTAAATC
* *
18924904 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-AGCT
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTA-CT
* *
18924967 ATATCCGGTTAAATT
63 AAATCCGGTTAAATC
18924982 CCGAAGG
1 CCGAAGG
18924989 TACGTGATTT
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
76 3 0.04
77 39 0.53
78 31 0.42
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.25
Consensus pattern (77 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTACTAAA
TCCGGTTAAATC
Found at i:18932673 original size:40 final size:39
Alignment explanation
Indices: 18932589--18932773 Score: 212
Period size: 40 Copynumber: 4.6 Consensus size: 39
18932579 TTGAATGATG
* * * *
18932589 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
18932629 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
18932669 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
18932708 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
18932749 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
18932774 AACGAAGCTA
Statistics
Matches: 126, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:18932725 original size:79 final size:81
Alignment explanation
Indices: 18932589--18932773 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
18932579 TTGAATGATG
*
18932589 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
18932653 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
18932668 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
18932730 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
18932748 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
18932774 AACGAAGCTA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:18940575 original size:40 final size:39
Alignment explanation
Indices: 18940491--18940715 Score: 265
Period size: 40 Copynumber: 5.6 Consensus size: 39
18940481 TTGAATGATG
* * * *
18940491 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
18940531 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
18940571 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
18940610 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTAAA
*
18940650 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
18940691 -CCGGGCTATGTTCCGAAGGCATTTG
1 TCCGGGCTAAG-TCCGAAGGCATTTG
18940716 AACGAGGAGC
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
39 34 0.21
40 118 0.72
41 11 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:18940707 original size:80 final size:80
Alignment explanation
Indices: 18940491--18940715 Score: 294
Period size: 80 Copynumber: 2.8 Consensus size: 80
18940481 TTGAATGATG
* * * * * *
18940491 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAGTTCCGAAGGCATT
*
18940555 TGTGCGAGATACTAAT
65 TGTGCGAGATACTAAA
* * *
18940571 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTTCCGAAGGCATT
*
18940634 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* *
18940650 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTTCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTTCCGAAGGCATTT
18940715 G
66 G
18940716 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
78 1 0.01
79 58 0.46
80 64 0.51
81 2 0.02
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTTCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:18940737 original size:119 final size:119
Alignment explanation
Indices: 18940491--18940738 Score: 272
Period size: 119 Copynumber: 2.1 Consensus size: 119
18940481 TTGAATGATG
* *
18940491 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
18940556 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
18940610 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * *
18940673 TTGTGCGAGTTACT-ATAACCGGGCTATGTTCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
18940730 TCC-GGTTAA
1 TCCGGGTTAA
18940739 ATTCCGAAAG
Statistics
Matches: 108, Mismatches: 16, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 75 0.69
120 30 0.28
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:18957654 original size:30 final size:30
Alignment explanation
Indices: 18957620--18957680 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
18957610 TTCCCGAGCC
*
18957620 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGAAAAAGTT
* * *
18957650 TAGGGGAAAAATTGTAATTTTGAAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGAAAAAGTT
18957680 T
1 T
18957681 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.44, C:0.02, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGAAAAAGTT
Found at i:18972767 original size:6 final size:6
Alignment explanation
Indices: 18972756--18972781 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
18972746 AAAAATTCAA
18972756 AAAATT AAAATT AAAATT AAAATT AA
1 AAAATT AAAATT AAAATT AAAATT AA
18972782 TTTGGGTTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
AAAATT
Found at i:18992722 original size:33 final size:33
Alignment explanation
Indices: 18992684--18992750 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
18992674 TTATCTTGTA
18992684 TCCCAGATGAGTGTTTCAAATGTGTCATATCTT
1 TCCCAGATGAGTGTTTCAAATGTGTCATATCTT
*
18992717 TCCCAGATGAGTGTTTGAAATGTGTCATATCTT
1 TCCCAGATGAGTGTTTCAAATGTGTCATATCTT
18992750 T
1 T
18992751 ACTTCAAGAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.24, C:0.16, G:0.19, T:0.40
Consensus pattern (33 bp):
TCCCAGATGAGTGTTTCAAATGTGTCATATCTT
Found at i:18995908 original size:48 final size:48
Alignment explanation
Indices: 18995833--18995934 Score: 181
Period size: 48 Copynumber: 2.1 Consensus size: 48
18995823 AGTCTGTCAA
18995833 CAAG-TAAAAGCGAAACATCAGGTGCCTTCAGAATTGCTTCAGCCTAT
1 CAAGATAAAAGCGAAACATCAGGTGCCTTCAGAATTGCTTCAGCCTAT
18995880 CAAGATAAAAGC-AGAACATCAGGTGCCTTCAGAATTGCTTCAGCCTAT
1 CAAGATAAAAGCGA-AACATCAGGTGCCTTCAGAATTGCTTCAGCCTAT
18995928 CAAGATA
1 CAAGATA
18995935 CCTGAGTGGA
Statistics
Matches: 53, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
47 5 0.09
48 48 0.91
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.23
Consensus pattern (48 bp):
CAAGATAAAAGCGAAACATCAGGTGCCTTCAGAATTGCTTCAGCCTAT
Found at i:19000556 original size:40 final size:40
Alignment explanation
Indices: 19000508--19000732 Score: 233
Period size: 40 Copynumber: 5.7 Consensus size: 40
19000498 GCTACTCGTT
* * *
19000508 CAAATGCCTTCGGGACATAGCCCGG-TTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
19000548 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
19000588 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTTGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
19000627 CAAATGCCTTTGGGACTTAACCCGGATTTAGTAACTCGAA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
19000667 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
* *
19000708 GAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
19000733 CACCATTCAA
Statistics
Matches: 155, Mismatches: 25, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
39 37 0.24
40 107 0.69
41 11 0.07
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:19000628 original size:79 final size:80
Alignment explanation
Indices: 19000508--19000732 Score: 251
Period size: 79 Copynumber: 2.8 Consensus size: 80
19000498 GCTACTCGTT
* *
19000508 CAAATGCCTTCGGGACATAGCCCGGTTATAATAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAATAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
19000573 ATTTAGTAACTCGCA
66 ATTTAGTAACTCGAA
* * * * *
19000588 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTTGCACAAATGCCTTTGGGACTTAACCCG
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAATAACTCGCACAAATGCCTTCGGGACTTAACCCG
19000651 GATTTAGTAACTCGAA
65 GATTTAGTAACTCGAA
* * ** * * * *
19000667 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAGAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CATAGCCCGGATATAATAAC-TCGCACAAATGCCTTCGGGACTTAACCC
19000730 GGA
64 GGA
19000733 CACCATTCAA
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
78 3 0.02
79 66 0.53
80 47 0.38
81 8 0.06
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAATAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATTTAGTAACTCGAA
Found at i:19000692 original size:119 final size:120
Alignment explanation
Indices: 19000508--19000732 Score: 278
Period size: 119 Copynumber: 1.9 Consensus size: 120
19000498 GCTACTCGTT
* * *
19000508 CAAATGCCTTCGGGACATAGCCCGGTTATAATAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGTTATAATAACTCGAACAAATGCCTTCGGGACTTAACCCGG
* *
19000573 ATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTTGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTTGCA
* * * **
19000627 CAAATGCCTTTGGGACTTAACCCGGATT-TAGTAACTCGAACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAACCCGG-TTATAATAACTCGAACAAATGCCTTCGGGA-CTTAACCC
* * *
19000690 GGATATGGTCACTTAGCAGAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
19000733 CACCATTCAA
Statistics
Matches: 89, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
118 3 0.03
119 66 0.74
120 20 0.22
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAACCCGGTTATAATAACTCGAACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTTGCA
Found at i:19015179 original size:15 final size:13
Alignment explanation
Indices: 19015146--19015178 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
19015136 GACACACTTG
19015146 CGTGTGTCTAGGC
1 CGTGTGTCTAGGC
19015159 CGTGTGTCTAGGC
1 CGTGTGTCTAGGC
19015172 CGTGTGT
1 CGTGTGT
19015179 GACACACGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.06, C:0.21, G:0.39, T:0.33
Consensus pattern (13 bp):
CGTGTGTCTAGGC
Found at i:19030252 original size:40 final size:40
Alignment explanation
Indices: 19030203--19030343 Score: 178
Period size: 40 Copynumber: 3.5 Consensus size: 40
19030193 CGGATGTAAC
19030203 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
19030243 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* ** * *
19030283 AACTAGCAC-AATTGCCTTC-GGATCTTAGTCCGGATATAGT
1 AACCAGCACGAA-TGCCTTCGGGA-CTTAACCCGGTTATAAT
* *
19030323 AACTAGCACAAATGCCTTCGG
1 AACCAGCACGAATGCCTTCGG
19030344 ATCTGAGTCC
Statistics
Matches: 90, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
39 5 0.06
40 82 0.91
41 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (40 bp):
AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:19030353 original size:40 final size:40
Alignment explanation
Indices: 19030232--19030359 Score: 141
Period size: 40 Copynumber: 3.2 Consensus size: 40
19030222 GGGACTTAAC
* ** * * **
19030232 CCGGTTATAATAACCCGCACGAATGCCTTCGGGA-CTTAAC
1 CCGGATATAATAACTAGCACAAATGCCTTC-GGATCTGAGT
* * *
19030272 CCGGTTATAATAACTAGCACAATTGCCTTCGGATCTTAGT
1 CCGGATATAATAACTAGCACAAATGCCTTCGGATCTGAGT
*
19030312 CCGGATATAGTAACTAGCACAAATGCCTTCGGATCTGAGT
1 CCGGATATAATAACTAGCACAAATGCCTTCGGATCTGAGT
19030352 CCGGATAT
1 CCGGATAT
19030360 CATCCGAATA
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
39 3 0.04
40 74 0.96
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (40 bp):
CCGGATATAATAACTAGCACAAATGCCTTCGGATCTGAGT
Found at i:19035108 original size:25 final size:27
Alignment explanation
Indices: 19035071--19035123 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
19035061 TCAAACATGC
19035071 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
19035097 ATTTCGGT-AATTTATCTCCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
19035123 A
1 A
19035124 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.38
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:19038216 original size:26 final size:26
Alignment explanation
Indices: 19038187--19038238 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
19038177 ATTTAACTAG
19038187 ATGAGCTCATCATTGAACAATTCATT
1 ATGAGCTCATCATTGAACAATTCATT
19038213 ATGAGCTCATCATTGAACAATTCATT
1 ATGAGCTCATCATTGAACAATTCATT
19038239 CATACATGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.35
Consensus pattern (26 bp):
ATGAGCTCATCATTGAACAATTCATT
Found at i:19040759 original size:36 final size:36
Alignment explanation
Indices: 19040712--19040785 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
19040702 ATAGCATTAG
19040712 TCTTATATGAGCTCATCATTTCAAGCATTTCTATTT
1 TCTTATATGAGCTCATCATTTCAAGCATTTCTATTT
19040748 TCTTATATGAGCTCATCATTTCAAGCATTTCTATTT
1 TCTTATATGAGCTCATCATTTCAAGCATTTCTATTT
19040784 TC
1 TC
19040786 GTTCCTCATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.24, C:0.20, G:0.08, T:0.47
Consensus pattern (36 bp):
TCTTATATGAGCTCATCATTTCAAGCATTTCTATTT
Found at i:19044210 original size:47 final size:47
Alignment explanation
Indices: 19044158--19044809 Score: 1083
Period size: 47 Copynumber: 13.7 Consensus size: 47
19044148 TTAGGATTCT
* * *
19044158 ATGTGATGGATGTGAACA-TGCATATATATGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
* *
19044205 ATGTGATGAATGTGAAAGTGTATATATGTGATAATGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19044252 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19044299 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19044346 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
19044395 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
19044444 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19044491 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
19044540 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19044587 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
19044634 ATGCGATGAATGTGAATA-TGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
19044681 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
19044728 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
19044775 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
19044810 TCCCGAAGGG
Statistics
Matches: 577, Mismatches: 21, Indels: 14
0.94 0.03 0.02
Matches are distributed among these distances:
46 2 0.00
47 431 0.75
48 1 0.00
49 143 0.25
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:19044982 original size:35 final size:35
Alignment explanation
Indices: 19044928--19045003 Score: 100
Period size: 35 Copynumber: 2.1 Consensus size: 35
19044918 CCGAGCTCTA
* *
19044928 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGA-CCGATAACTACGTGTGGAGATTATGTCC-GGT
*
19044964 AAGACCGATAACTTCGTGTGGAGATTATGTCCGGT
1 AAGACCGATAACTACGTGTGGAGATTATGTCCGGT
19044999 AAGAC
1 AAGAC
19045004 TTCGTAATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
35 23 0.64
36 13 0.36
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.26
Consensus pattern (35 bp):
AAGACCGATAACTACGTGTGGAGATTATGTCCGGT
Found at i:19046271 original size:40 final size:40
Alignment explanation
Indices: 19046216--19046579 Score: 503
Period size: 40 Copynumber: 8.8 Consensus size: 40
19046206 GAGAATTGAG
19046216 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
19046256 AGTGATATATCCGGGCTAACTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
19046296 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
19046336 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
19046376 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
19046416 AATGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
*
19046456 AGTGATATATCCGGGCTATCCGGAGCTAATGTATCCGAAGAGCATTCGTGCT
1 AGTG--ATA-------TATCCGG-GCTAA-GT-CCCGAAGAGCATTCGTGCT
* * **
19046508 AGAGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
19046548 GGTGTTATATCCGAGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
19046580 ATCATGCTGG
Statistics
Matches: 291, Mismatches: 21, Indels: 24
0.87 0.06 0.07
Matches are distributed among these distances:
40 239 0.82
42 8 0.03
43 6 0.02
49 7 0.02
50 8 0.03
51 2 0.01
52 21 0.07
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:19046498 original size:52 final size:49
Alignment explanation
Indices: 19046423--19046525 Score: 152
Period size: 52 Copynumber: 2.0 Consensus size: 49
19046413 GCTAATGATA
*
19046423 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGC
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGAGATATATCCGGGC
* *
19046472 TATCCGGAGCTAATGTATCCGAAGAGCATTCGTGCTAGAGATATATCCGTGC
1 TATCCGG-GCTAA-GT-CCCGAAGAGCATTCGTGCTAGAGATATATCCGGGC
19046524 TA
1 TA
19046526 AACCCCGAAG
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
49 7 0.15
50 5 0.10
51 2 0.04
52 34 0.71
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (49 bp):
TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGAGATATATCCGGGC
Found at i:19046557 original size:92 final size:89
Alignment explanation
Indices: 19046383--19046565 Score: 251
Period size: 92 Copynumber: 2.0 Consensus size: 89
19046373 GCTAGTGATA
**
19046383 TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAATGATATATCCGGGCTAAGTCCCGAAGAGCA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAATGATATATCCGGGCTAAACCCCGAAGAGCA
*
19046448 TTCGTGCTAGTGATATATCCGGGC
66 TTCGTGCTAGTGATATATCCGAGC
* * *
19046472 TATCCGGAGCTAATGTATCCGAAGAGCATTCGTGCTAGA-GATATATCCGTGCTAAACCCCGAAG
1 TATCCGG-GCTAA-GT-CCCGAAGAGCATTCATGCTA-ATGATATATCCGGGCTAAACCCCGAAG
* *
19046536 AGCATTCGTGCTGGTGTTATATCCGAGC
62 AGCATTCGTGCTAGTGATATATCCGAGC
19046564 TA
1 TA
19046566 GGTCCCGAAG
Statistics
Matches: 82, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
89 7 0.09
90 5 0.06
91 2 0.02
92 67 0.82
93 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (89 bp):
TATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAATGATATATCCGGGCTAAACCCCGAAGAGCA
TTCGTGCTAGTGATATATCCGAGC
Found at i:19046796 original size:25 final size:25
Alignment explanation
Indices: 19046755--19046806 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
19046745 TGTGTAATAA
19046755 TGAATGAATAAGAGCACTATGTGTG
1 TGAATGAATAAGAGCACTATGTGTG
* *
19046780 TGAATG-ATTAGAGGCACTGTGTGTG
1 TGAATGAATAAGA-GCACTATGTGTG
19046805 TG
1 TG
19046807 CGAGATCGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.29, C:0.08, G:0.33, T:0.31
Consensus pattern (25 bp):
TGAATGAATAAGAGCACTATGTGTG
Found at i:19049536 original size:47 final size:47
Alignment explanation
Indices: 19049485--19050183 Score: 1211
Period size: 47 Copynumber: 14.7 Consensus size: 47
19049475 TTAGGATTCT
* *
19049485 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
19049532 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19049579 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19049626 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19049673 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19049720 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
19049769 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
19049818 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19049865 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* *
19049914 ATGTGATGAATATGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19049961 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19050008 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19050055 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
19050102 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
19050149 ACGTAATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
19050184 TCCCGAAGGG
Statistics
Matches: 630, Mismatches: 17, Indels: 10
0.96 0.03 0.02
Matches are distributed among these distances:
46 1 0.00
47 487 0.77
49 142 0.23
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:19050358 original size:37 final size:37
Alignment explanation
Indices: 19050302--19050380 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
19050292 CCGAGCTCTA
* * *
19050302 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
19050339 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
19050376 AAGAC
1 AAGAC
19050381 TTTGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:19053741 original size:37 final size:37
Alignment explanation
Indices: 19053691--19053765 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
19053681 GAATTTACGA
19053691 ATTACAACTTGAACCAGTAATACAAAATTAATTAACT
1 ATTACAACTTGAACCAGTAATACAAAATTAATTAACT
*
19053728 ATTACAACTTGAACTAGTAATACAAAATTAATTAACT
1 ATTACAACTTGAACCAGTAATACAAAATTAATTAACT
19053765 A
1 A
19053766 AGTTTTAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.49, C:0.15, G:0.05, T:0.31
Consensus pattern (37 bp):
ATTACAACTTGAACCAGTAATACAAAATTAATTAACT
Found at i:19059078 original size:79 final size:77
Alignment explanation
Indices: 19058976--19059199 Score: 252
Period size: 79 Copynumber: 2.8 Consensus size: 77
19058966 GCTACTCGTT
* * *
19058976 CAAACGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAA-TGCCTTCGGGACTTAGCCCGG
*
19059041 ATTTAGTAACTCGCA
63 AATTAGTAACTCGCA
* *
19059056 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCAC-AATGCCTTCGGGACTTAGCCCGGA
*
19059120 ATTAGTATCTCGCA
64 ATTAGTAACTCGCA
* * * * * *
19059134 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAATGCCTTCGGGACTTAGCCCGG
19059199 A
63 A
19059200 CATCATTCAA
Statistics
Matches: 123, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
78 36 0.29
79 55 0.45
80 32 0.26
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (77 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAATGCCTTCGGGACTTAGCCCGGAAT
TAGTAACTCGCA
Found at i:19059093 original size:39 final size:40
Alignment explanation
Indices: 19058976--19059199 Score: 262
Period size: 39 Copynumber: 5.7 Consensus size: 40
19058966 GCTACTCGTT
* * *
19058976 CAAACGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
19059016 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
19059056 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
19059095 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
19059134 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
19059175 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
19059200 CATCATTCAA
Statistics
Matches: 163, Mismatches: 14, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 2 0.01
39 74 0.45
40 74 0.45
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:19059199 original size:40 final size:40
Alignment explanation
Indices: 19058957--19059199 Score: 229
Period size: 40 Copynumber: 6.1 Consensus size: 40
19058947 CGGAATTTAA
** * *
19058957 CCGGATATAGCTAC-TCGTTCAAACGCCTTCGGGACATAGC
1 CCGGATATAG-TACTTCGCACAAATGCCTTCGGGACTTAGC
* * *
19058997 CCGGTTATAGTAAC-TCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGT-ACTTCGCACAAATGCCTTCGGGACTTAGC
*
19059037 CCGGATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGT-ACTTCGCACAAATGCCTTCGGGACTTAGC
19059076 CCGGA-ATTAGTA-TCTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATA-TAGTACT-TCGCACAAATGCCTTCGGGACTTAGC
*
19059115 CCGGA-ATTAGTA-TCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTACT-TCGCACAAATGCCTTCGGGA-CTTAGC
* *
19059155 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGT-ACTTCGCACAAATGCCTTCGGGACTTAGC
19059195 CCGGA
1 CCGGA
19059200 CATCATTCAA
Statistics
Matches: 177, Mismatches: 16, Indels: 20
0.83 0.08 0.09
Matches are distributed among these distances:
38 3 0.02
39 70 0.40
40 90 0.51
41 13 0.07
42 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTACTTCGCACAAATGCCTTCGGGACTTAGC
Found at i:19067356 original size:38 final size:40
Alignment explanation
Indices: 19067205--19067427 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
19067195 GCTACTCGTT
* *
19067205 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
19067245 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
19067285 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
19067324 CAAATGCCTTCGGG-CTTAG-CCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
19067362 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
19067403 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
19067428 CATCATTCAA
Statistics
Matches: 163, Mismatches: 12, Indels: 15
0.86 0.06 0.08
Matches are distributed among these distances:
37 2 0.01
38 30 0.18
39 48 0.29
40 70 0.43
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:19067387 original size:117 final size:120
Alignment explanation
Indices: 19067205--19067427 Score: 287
Period size: 117 Copynumber: 1.9 Consensus size: 120
19067195 GCTACTCGTT
* *
19067205 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
19067270 ATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * **
19067324 CAAATGCCTTCGGG-CTTAG-CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
19067385 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
19067428 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
116 4 0.04
117 49 0.54
118 23 0.26
119 14 0.16
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:19074321 original size:46 final size:44
Alignment explanation
Indices: 19074262--19074376 Score: 149
Period size: 44 Copynumber: 2.6 Consensus size: 44
19074252 ATAGAACAGA
* *
19074262 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATT--AAATATGGCATTGGAG
* *
19074308 ACAGGATTGAGCCATGTAAGTCCATATTATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
* **
19074352 ACAGGAATAATTCATGTAAGTCCAT
1 ACAGGAATGAGCCATGTAAGTCCAT
19074377 GTCAAAGACA
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 35 0.57
46 26 0.43
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.28
Consensus pattern (44 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAATATGGCATTGGAG
Found at i:19074357 original size:44 final size:45
Alignment explanation
Indices: 19074262--19074395 Score: 153
Period size: 46 Copynumber: 3.0 Consensus size: 45
19074252 ATAGAACAGA
* *
19074262 ACAGAAATGAGCCATGTAAGTCCATATTAGAAATATGGCTTTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTA-AAATATGGCATTGGAG
* *
19074308 ACAGGATTGAGCCATGTAAGTCCATATT-ATATATGGCATTGGAG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
* ** * * *
19074352 ACAGGAATAATTCATGTAAGTCCATGTCAAAGACATGGCATTGG
1 ACAGGAATGAGCCATGTAAGTCCATATTAAA-ATATGGCATTGG
19074396 CAGGATATTG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
44 36 0.49
45 1 0.01
46 37 0.50
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (45 bp):
ACAGGAATGAGCCATGTAAGTCCATATTAAAATATGGCATTGGAG
Found at i:19074623 original size:35 final size:35
Alignment explanation
Indices: 19074575--19074645 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
19074565 TAGAAATTGA
* *
19074575 GAAGTAAAGAAATTTATGATGTTAGATGATATTAT
1 GAAGTAAAAAAATTTATGATGTTAGATGATACTAT
19074610 GAAGTAAAAAAATTTATGATGTTAGATGATACTAT
1 GAAGTAAAAAAATTTATGATGTTAGATGATACTAT
19074645 G
1 G
19074646 CATAATTATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.44, C:0.01, G:0.20, T:0.35
Consensus pattern (35 bp):
GAAGTAAAAAAATTTATGATGTTAGATGATACTAT
Found at i:19079353 original size:5 final size:5
Alignment explanation
Indices: 19079343--19079422 Score: 52
Period size: 5 Copynumber: 14.8 Consensus size: 5
19079333 AAAAATACTT
* * *
19079343 ATAAA ATAAAA ATAAA ATTAACA ATAAA ATAAA ATTAT ATAAT ATAAA
1 ATAAA AT-AAA ATAAA A-TAA-A ATAAA ATAAA ATAAA ATAAA ATAAA
* * *
19079391 AAAATA ATAATA ATATA ATAACA ATATA ATAA
1 ATAA-A ATAA-A ATAAA ATAA-A ATAAA ATAA
19079423 TAAAATTACA
Statistics
Matches: 60, Mismatches: 10, Indels: 10
0.75 0.12 0.12
Matches are distributed among these distances:
5 34 0.57
6 24 0.40
7 2 0.03
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (5 bp):
ATAAA
Found at i:19079357 original size:11 final size:11
Alignment explanation
Indices: 19079343--19079428 Score: 57
Period size: 11 Copynumber: 7.6 Consensus size: 11
19079333 AAAAATACTT
19079343 ATAAAATAAAA
1 ATAAAATAAAA
*
19079354 ATAAAATTAACA
1 ATAAAA-TAAAA
19079366 ATAAAATAAAA
1 ATAAAATAAAA
* *
19079377 TTATATAATATAA
1 --ATAAAATAAAA
*
19079390 A-AAAATAATA
1 ATAAAATAAAA
* *
19079400 ATAATATAATA
1 ATAAAATAAAA
* * *
19079411 ACAATATAATA
1 ATAAAATAAAA
19079422 ATAAAAT
1 ATAAAAT
19079429 TACAACAAAA
Statistics
Matches: 60, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
10 7 0.12
11 34 0.57
12 10 0.17
13 9 0.15
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (11 bp):
ATAAAATAAAA
Found at i:19079405 original size:19 final size:19
Alignment explanation
Indices: 19079332--19079424 Score: 68
Period size: 19 Copynumber: 4.9 Consensus size: 19
19079322 TAACTTAACG
* * *
19079332 AAAAAATACTTATAAAATA
1 AAAAAATAATAATAATATA
*
19079351 AAAATAA-AATTAACAATA-A
1 AAAA-AATAA-TAATAATATA
*
19079370 AATAAAATTAT-ATAATATA
1 AA-AAAATAATAATAATATA
19079389 AAAAAATAATAATAATATA
1 AAAAAATAATAATAATATA
*
19079408 ATAACAAT-ATAATAATA
1 A-AAAAATAATAATAATA
19079425 AAATTACAAC
Statistics
Matches: 59, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
18 12 0.20
19 32 0.54
20 15 0.25
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (19 bp):
AAAAAATAATAATAATATA
Found at i:19079411 original size:22 final size:22
Alignment explanation
Indices: 19079343--19079425 Score: 66
Period size: 22 Copynumber: 3.8 Consensus size: 22
19079333 AAAAATACTT
19079343 ATAAAATAAA-AATAA-AAT-TA
1 ATAAAA-AAATAATAATAATATA
* * *
19079363 ACAATAAAATAA-AATTATATAA
1 ATAAAAAAATAATAATAATAT-A
19079385 TATAAAAAAATAATAATAATATA
1 -ATAAAAAAATAATAATAATATA
* *
19079408 ATAACAATATAATAATAA
1 ATAAAAAAATAATAATAA
19079426 AATTACAACA
Statistics
Matches: 49, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
19 5 0.10
20 8 0.16
21 1 0.02
22 17 0.35
23 11 0.22
24 7 0.14
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (22 bp):
ATAAAAAAATAATAATAATATA
Found at i:19079433 original size:19 final size:18
Alignment explanation
Indices: 19079344--19079430 Score: 64
Period size: 17 Copynumber: 5.1 Consensus size: 18
19079334 AAAATACTTA
*
19079344 TAAA-ATAAAAATAAAAT
1 TAAATATAATAATAAAAT
19079361 TAACA-ATAA-AATAAAAT
1 TAA-ATATAATAATAAAAT
19079378 T--ATATAAT-ATAAAA-
1 TAAATATAATAATAAAAT
*
19079392 -AAATAATAATAATATAAT
1 TAAAT-ATAATAATAAAAT
*
19079410 AACAATATAATAATAAAAT
1 TA-AATATAATAATAAAAT
19079429 TA
1 TA
19079431 CAACAAAACA
Statistics
Matches: 57, Mismatches: 3, Indels: 18
0.73 0.04 0.23
Matches are distributed among these distances:
14 1 0.02
15 12 0.21
16 5 0.09
17 17 0.30
18 5 0.09
19 14 0.25
20 3 0.05
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (18 bp):
TAAATATAATAATAAAAT
Found at i:19079435 original size:22 final size:22
Alignment explanation
Indices: 19079394--19079436 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
19079384 ATATAAAAAA
* *
19079394 ATAATAATAATATAATAACAAT
1 ATAATAATAAAATAACAACAAT
*
19079416 ATAATAATAAAATTACAACAA
1 ATAATAATAAAATAACAACAA
19079437 AACAACAAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (22 bp):
ATAATAATAAAATAACAACAAT
Found at i:19087205 original size:43 final size:44
Alignment explanation
Indices: 19087140--19087222 Score: 123
Period size: 43 Copynumber: 1.9 Consensus size: 44
19087130 TAATAATAAA
* * *
19087140 CCTCGGTGTTGAAAGAGATGAAGTGAGAATGATGG-TTTTCCAG
1 CCTCGATGTTGAAAAAGATGAAGCGAGAATGATGGATTTTCCAG
*
19087183 CCTCGATGTTGAAAAAGGTGAAGCGAGAATGATGGATTTT
1 CCTCGATGTTGAAAAAGATGAAGCGAGAATGATGGATTTT
19087223 TGTAATCGCT
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
43 31 0.89
44 4 0.11
ACGTcount: A:0.30, C:0.11, G:0.31, T:0.28
Consensus pattern (44 bp):
CCTCGATGTTGAAAAAGATGAAGCGAGAATGATGGATTTTCCAG
Found at i:19089583 original size:353 final size:353
Alignment explanation
Indices: 19088292--19089791 Score: 1987
Period size: 353 Copynumber: 4.3 Consensus size: 353
19088282 AAAGATTTTC
* * * * *
19088292 CGTTGTCCATGGTCAGATAATACTACAACTCTTTGCAAAGTATCCTGATGAGGAGATTAAGAAGT
1 CGTTGTGCATGGTCAAATAATACTACAACTCTTTGTAGAGTATCCTGATGAGAAGATTAAGAAGT
* * * *
19088357 GCACATTTTTCGTAGGCCTTGCACATAAAATGGAGGAGAGACACCATACAAAATGGTTATTTAAA
66 GCACATTTTTCGTAGGCCTTGCAAATAAAATGGAGGAGAAACACCATACAAAATGATTAGTTAAA
* * *
19088422 AAGGACTAATTATGACTATTTCAATTTTAAAGACTAAATTGAATAAAATGTAAAACTTTAAGGGG
131 AAGGACTAGTTATGACTATTTCGATTTTAGAGACTAAATTGAATAAAATGTAAAACTTTAAGGGG
* * *
19088487 AAAACGAATAATGAAATTGAATTGATACATACATATAATAGATTTTTATAAGATATTTGGAATTC
196 CATACGAATAATGAAATTGAATTGATACATACATATAATAGATTTTTATAAGATATTTGGAATTG
* * * *
19088552 ATAAAT-AGAATTAAATTATTATATATATCAGGAATTGAACCCAGATGATCATGC--TTATATCT
261 ATAAATCA-AACTGAATTATTATATAGATCAGGAATTGAACCAAGATGATCATGCTTTTATATCT
** *
19088614 ACTAATCC-ACAATTGTCGAGAGATATGT
325 ACTAATCCAACAGCTGTTGAGAGATATGT
* * * * *
19088642 CCTTGTGCATTGTTATATAATACTACAACTTTTTGTAGAGTATCCTGATGAGAAGATTAAGAAGT
1 CGTTGTGCATGGTCAAATAATACTACAACTCTTTGTAGAGTATCCTGATGAGAAGATTAAGAAGT
* * * *
19088707 GCACATTTTTCGTAGGCTTTGCAAATAACATGGAGGAGAAATACCATGCAAAATGATTAGTTAAA
66 GCACATTTTTCGTAGGCCTTGCAAATAAAATGGAGGAGAAACACCATACAAAATGATTAGTTAAA
* * *
19088772 AATGACTAGTTATGACTATTTTGATTTTAGAGACTAAATTGAATAAAATGTGAAACTTTAAGGGG
131 AAGGACTAGTTATGACTATTTCGATTTTAGAGACTAAATTGAATAAAATGTAAAACTTTAAGGGG
* * * * *
19088837 CATACGAATAATAAAATTGAATTCATACATACATATAATGGATTATTATAAGATGTTTGGAATTG
196 CATACGAATAATGAAATTGAATTGATACATACATATAATAGATTTTTATAAGATATTTGGAATTG
* * * * * *
19088902 ATAAATTAAACTGAATTGTTATACAAATTAGGAATTGAACCAAGATGATCATACTTTTATATCTA
261 ATAAATCAAACTGAATTATTATATAGATCAGGAATTGAACCAAGATGATCATGCTTTTATATCTA
*
19088967 CTAATCCAACAGTTGTTGAGAGATATGT
326 CTAATCCAACAGCTGTTGAGAGATATGT
* * * * * *
19088995 CATTGTGCATGGTCAGATAATATTACAACTCTTTGCAGAGTATCCTTATGAGAAGATTAAGAACT
1 CGTTGTGCATGGTCAAATAATACTACAACTCTTTGTAGAGTATCCTGATGAGAAGATTAAGAAGT
* * * * * *
19089060 ACACGTTTGTCGTAGGCCTTACAAAT-AAATGGAGGAGAGACACCATGCAAAATGATTAGTTAAA
66 GCACATTTTTCGTAGGCCTTGCAAATAAAATGGAGGAGAAACACCATACAAAATGATTAGTTAAA
* *
19089124 AAGGACTCGTTATGACTATTTCGATTTTAG-GTATTAAATTGAATAAAATGTAAAACTTTAAGGG
131 AAGGACTAGTTATGACTATTTCGATTTTAGAG-ACTAAATTGAATAAAATGTAAAACTTTAAGGG
* * * * * * *
19089188 GCATACGAATAATGAAATCGAACTAATACATACTTATAATAGATTTTTCTAAGATGTTTGTAATT
195 GCATACGAATAATGAAATTGAATTGATACATACATATAATAGATTTTTATAAGATATTTGGAATT
* * * ** * * *
19089253 AATAAATCGAACTGAATTGTTATATAGATTGGGAATTTAACCAAGATTATCATGTTTTTATATCT
260 GATAAATCAAACTGAATTATTATATAGATCAGGAATTGAACCAAGATGATCATGCTTTTATATCT
*
19089318 ACTAATCCAATAGCTGTTGAGAGATGCAT-T
325 ACTAATCCAACAGCTGTTGAGAGAT--ATGT
* * *
19089348 -GTTGTGCATGGTCAAATAATACTACAACTCTTTGTAGACTATCCTGATGAGAAAATTAAGAACT
1 CGTTGTGCATGGTCAAATAATACTACAACTCTTTGTAGAGTATCCTGATGAGAAGATTAAGAAGT
* * *
19089412 GCACATTTTTCGTAGGCCATGCAGATAAAATGGAGGAGAAACACCATACAAAATGGTTAGTTAAA
66 GCACATTTTTCGTAGGCCTTGCAAATAAAATGGAGGAGAAACACCATACAAAATGATTAGTTAAA
* * * *
19089477 AAGGACTAGTTATGGCTATTTCGATTTTAGGGACTAAATTGAATAAAATGTGAAATTTTAAGGGG
131 AAGGACTAGTTATGACTATTTCGATTTTAGAGACTAAATTGAATAAAATGTAAAACTTTAAGGGG
* * *
19089542 CATACGAATAATGAAATTGAATTGATACATATATATAATAGATTGTTATAAGATATTTGAAATTG
196 CATACGAATAATGAAATTGAATTGATACATACATATAATAGATTTTTATAAGATATTTGGAATTG
* *
19089607 ATAAATCAAACTGAATTATTATATAGATCAGGAATTGAACCAAGATGATTATGCTTTTATATATA
261 ATAAATCAAACTGAATTATTATATAGATCAGGAATTGAACCAAGATGATCATGCTTTTATATCTA
* *
19089672 CTAA-CTTAACAGCTATTGAGAGATATGT
326 CTAATC-CAACAGCTGTTGAGAGATATGT
* * * *
19089700 CATTGTGTAAT-GTCAAATAATACTACAATTCTTTGTAGAGTATCCTAATGAGAAGATTAAGAAG
1 CGTTGTG-CATGGTCAAATAATACTACAACTCTTTGTAGAGTATCCTGATGAGAAGATTAAGAAG
19089764 TGCACATTTGTT-GTAGGCCTTGCAAATA
65 TGCACATTT-TTCGTAGGCCTTGCAAATA
19089792 TCGTTCCAAT
Statistics
Matches: 1000, Mismatches: 136, Indels: 25
0.86 0.12 0.02
Matches are distributed among these distances:
350 273 0.27
351 4 0.00
352 321 0.32
353 395 0.40
354 7 0.01
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (353 bp):
CGTTGTGCATGGTCAAATAATACTACAACTCTTTGTAGAGTATCCTGATGAGAAGATTAAGAAGT
GCACATTTTTCGTAGGCCTTGCAAATAAAATGGAGGAGAAACACCATACAAAATGATTAGTTAAA
AAGGACTAGTTATGACTATTTCGATTTTAGAGACTAAATTGAATAAAATGTAAAACTTTAAGGGG
CATACGAATAATGAAATTGAATTGATACATACATATAATAGATTTTTATAAGATATTTGGAATTG
ATAAATCAAACTGAATTATTATATAGATCAGGAATTGAACCAAGATGATCATGCTTTTATATCTA
CTAATCCAACAGCTGTTGAGAGATATGT
Found at i:19089742 original size:705 final size:702
Alignment explanation
Indices: 19088300--19089791 Score: 2087
Period size: 705 Copynumber: 2.1 Consensus size: 702
19088290 TCCGTTGTCC
* * *
19088300 ATGGTCAGATAATACTACAACTCTTTGCAAAGTATCCTGATGAGGAGATTAAGAAGTGCACATTT
1 ATGGTCAGATAATACTACAACTCTTTGCAGAGTATCCTAATGAGAAGATTAAGAAGTGCACATTT
* * * *
19088365 TTCGTAGGCCTTGCACATAAAATGGAGGAGAGACACCATACAAAATGGTTATTTAAAAAGGACTA
66 GTCGTAGGCCTTGCAAAT-AAATGGAGGAGAGACACCATACAAAATGATTAGTTAAAAAGGACTA
19088430 ATTATGACTATTTCAATTTTAAAGACTAAATTGAATAAAATGTAAAACTTTAAGGGGAAAACGAA
130 ATTATGACTATTTCAATTTTAAAGACTAAATTGAATAAAATGTAAAACTTTAAGGGGAAAACGAA
* * * *
19088495 TAATGAAATTGAATTGATACATACATATAATAGATTTTTATAAGATATTTGGAATTCATAAATAG
195 TAATGAAATCGAACTAATACATACATATAATAGATTTTTATAAGATATTTGGAATTAATAAATAG
* * *
19088560 AATTAAATTATTATATATATCAGGAATTGAACCCAGATGATCATGCTTATATCTACTAATCCACA
260 AACTAAATTATTATATAGATCAGGAATTGAACCAAGATGATCATGCTTATATCTACTAATCCACA
* * * * * *
19088625 ATTGTCGAGAGATATGTCCTTGTGCATTGTTATATAATACTACAACTTTTTGTAGAGTATCCTGA
325 ACTGTCGAGAGATATGTCCTTGTGCATGGTCAAATAATACTACAACTCTTTGTAGACTATCCTGA
* * ** * * *
19088690 TGAGAAGATTAAGAAGTGCACATTTTTCGTAGGCTTTGCAAATAACATGGAGGAGAAATACCATG
390 TGAGAAAATTAAGAACTGCACATTTTTCGTAGGCCATGCAAATAAAATGGAGGAGAAACACCATA
* *
19088755 CAAAATGATTAGTTAAAAATGACTAGTTATGACTATTTTGATTTTAGAGACTAAATTGAATAAAA
455 CAAAATGATTAGTTAAAAAGGACTAGTTATGACTATTTCGATTTTAGAGACTAAATTGAATAAAA
*
19088820 TGTGAAACTTTAAGGGGCATACGAATAATAAAATTGAATTCATACATACATATAATGGATTATTA
520 TGTGAAACTTTAAGGGGCATACGAATAATAAAATTGAATTCATACATACATATAATAGATTATTA
* * * * *
19088885 TAAGATGTTTGGAATTGATAAATTAAACTGAATTGTTATACAAATTAGGAATTGAACCAAGATGA
585 TAAGATATTTGAAATTGATAAATCAAACTGAATTATTATACAAATCAGGAATTGAACCAAGATGA
* * * *
19088950 TCATACTTTTATATCTACTAATCCAACAGTTGTTGAGAGATATGTCATTGTGC
650 TCATACTTTTATATATACTAATCCAACAGCTATTGAGAGATATGTCATTGTGA
* * * * *
19089003 ATGGTCAGATAATATTACAACTCTTTGCAGAGTATCCTTATGAGAAGATTAAGAACTACACGTTT
1 ATGGTCAGATAATACTACAACTCTTTGCAGAGTATCCTAATGAGAAGATTAAGAAGTGCACATTT
* * **
19089068 GTCGTAGGCCTTACAAATAAATGGAGGAGAGACACCATGCAAAATGATTAGTTAAAAAGGACTCG
66 GTCGTAGGCCTTGCAAATAAATGGAGGAGAGACACCATACAAAATGATTAGTTAAAAAGGACTAA
* * * * *
19089133 TTATGACTATTTCGATTTT-AGGTATTAAATTGAATAAAATGTAAAACTTTAAGGGGCATACGAA
131 TTATGACTATTTCAATTTTAAAG-ACTAAATTGAATAAAATGTAAAACTTTAAGGGGAAAACGAA
* * * * *
19089197 TAATGAAATCGAACTAATACATACTTATAATAGATTTTTCTAAGATGTTTGTAATTAATAAATCG
195 TAATGAAATCGAACTAATACATACATATAATAGATTTTTATAAGATATTTGGAATTAATAAATAG
* * ** * * *
19089262 AACTGAATTGTTATATAGATTGGGAATTTAACCAAGATTATCATGTTTTTATATCTACTAATCCA
260 AACTAAATTATTATATAGATCAGGAATTGAACCAAGATGATCATG--CTTATATCTACTAATCCA
* *
19089327 -ATAGCTGTTGAGAGATGCAT-T-GTTGTGCATGGTCAAATAATACTACAACTCTTTGTAGACTA
323 CA-A-CTGTCGAGAGAT--ATGTCCTTGTGCATGGTCAAATAATACTACAACTCTTTGTAGACTA
*
19089389 TCCTGATGAGAAAATTAAGAACTGCACATTTTTCGTAGGCCATGCAGATAAAATGGAGGAGAAAC
384 TCCTGATGAGAAAATTAAGAACTGCACATTTTTCGTAGGCCATGCAAATAAAATGGAGGAGAAAC
* * *
19089454 ACCATACAAAATGGTTAGTTAAAAAGGACTAGTTATGGCTATTTCGATTTTAGGGACTAAATTGA
449 ACCATACAAAATGATTAGTTAAAAAGGACTAGTTATGACTATTTCGATTTTAGAGACTAAATTGA
* * * *
19089519 ATAAAATGTGAAATTTTAAGGGGCATACGAATAATGAAATTGAATTGATACATATATATAATAGA
514 ATAAAATGTGAAACTTTAAGGGGCATACGAATAATAAAATTGAATTCATACATACATATAATAGA
* * *
19089584 TTGTTATAAGATATTTGAAATTGATAAATCAAACTGAATTATTATATAGATCAGGAATTGAACCA
579 TTATTATAAGATATTTGAAATTGATAAATCAAACTGAATTATTATACAAATCAGGAATTGAACCA
* * *
19089649 AGATGATTATGCTTTTATATATACTAA-CTTAACAGCTATTGAGAGATATGTCATTGTGTA
644 AGATGATCATACTTTTATATATACTAATC-CAACAGCTATTGAGAGATATGTCATTGTG-A
* * *
19089709 AT-GTCAAATAATACTACAATTCTTTGTAGAGTATCCTAATGAGAAGATTAAGAAGTGCACATTT
1 ATGGTCAGATAATACTACAACTCTTTGCAGAGTATCCTAATGAGAAGATTAAGAAGTGCACATTT
*
19089773 GTTGTAGGCCTTGCAAATA
66 GTCGTAGGCCTTGCAAATA
19089792 TCGTTCCAAT
Statistics
Matches: 690, Mismatches: 90, Indels: 16
0.87 0.11 0.02
Matches are distributed among these distances:
701 2 0.00
702 190 0.28
703 74 0.11
704 19 0.03
705 400 0.58
706 3 0.00
707 2 0.00
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (702 bp):
ATGGTCAGATAATACTACAACTCTTTGCAGAGTATCCTAATGAGAAGATTAAGAAGTGCACATTT
GTCGTAGGCCTTGCAAATAAATGGAGGAGAGACACCATACAAAATGATTAGTTAAAAAGGACTAA
TTATGACTATTTCAATTTTAAAGACTAAATTGAATAAAATGTAAAACTTTAAGGGGAAAACGAAT
AATGAAATCGAACTAATACATACATATAATAGATTTTTATAAGATATTTGGAATTAATAAATAGA
ACTAAATTATTATATAGATCAGGAATTGAACCAAGATGATCATGCTTATATCTACTAATCCACAA
CTGTCGAGAGATATGTCCTTGTGCATGGTCAAATAATACTACAACTCTTTGTAGACTATCCTGAT
GAGAAAATTAAGAACTGCACATTTTTCGTAGGCCATGCAAATAAAATGGAGGAGAAACACCATAC
AAAATGATTAGTTAAAAAGGACTAGTTATGACTATTTCGATTTTAGAGACTAAATTGAATAAAAT
GTGAAACTTTAAGGGGCATACGAATAATAAAATTGAATTCATACATACATATAATAGATTATTAT
AAGATATTTGAAATTGATAAATCAAACTGAATTATTATACAAATCAGGAATTGAACCAAGATGAT
CATACTTTTATATATACTAATCCAACAGCTATTGAGAGATATGTCATTGTGA
Found at i:19098817 original size:30 final size:30
Alignment explanation
Indices: 19098783--19098842 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
19098773 ATTTAATACG
*
19098783 AACTTTAAAAAAATTGCACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
19098813 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
19098843 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.07, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:19100429 original size:16 final size:15
Alignment explanation
Indices: 19100405--19100434 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
19100395 AACTGTTTTA
19100405 TTACAAATTTCACTC
1 TTACAAATTTCACTC
19100420 TTACATAATTTCACT
1 TTACA-AATTTCACT
19100435 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:19100690 original size:49 final size:49
Alignment explanation
Indices: 19100634--19100772 Score: 163
Period size: 49 Copynumber: 2.8 Consensus size: 49
19100624 AACCGAAGCT
* * * *
19100634 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCAACCATTA-
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCAACC-TAAC
* * * **
19100683 ATCTGGTACACGTAGTAGCCTACACATAGTACTAAACACGTGACCTAACC
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCAACCTAA-C
*
19100733 ATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACG
1 ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACG
19100773 TGATTGAAGT
Statistics
Matches: 75, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
48 2 0.03
49 37 0.49
50 36 0.48
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (49 bp):
ATCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGCAACCTAAC
Found at i:19102338 original size:46 final size:48
Alignment explanation
Indices: 19102271--19102388 Score: 161
Period size: 48 Copynumber: 2.5 Consensus size: 48
19102261 GTGTGCTAAC
*
19102271 GTAAGACATGTCTGGGACATGCATCAACCAC-AG-TA-TGAGAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCAACCACAAGATATTGA-AGCCAAT
* * *
19102317 GTAAGACATGTCTGGGACATGCATCAGCCCCAAGATATTTAAGCCAAT
1 GTAAGACATGTCTGGGACATGCATCAACCACAAGATATTGAAGCCAAT
*
19102365 GTAAGTCATGTCTGGGACATGCAT
1 GTAAGACATGTCTGGGACATGCAT
19102389 TGGCCTCGCG
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
46 29 0.45
47 2 0.03
48 31 0.48
49 2 0.03
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (48 bp):
GTAAGACATGTCTGGGACATGCATCAACCACAAGATATTGAAGCCAAT
Found at i:19102416 original size:48 final size:47
Alignment explanation
Indices: 19102271--19102425 Score: 154
Period size: 48 Copynumber: 3.3 Consensus size: 47
19102261 GTGTGCTAAC
* * *
19102271 GTAAGACATGTCTGGGACATGCATCAACCAC-AG-TATGAGAGCCAGT
1 GTAAGACATGTCTGGGACATGCATCAGCCCCAAGATATCA-AGCCAGT
* *
19102317 GTAAGACATGTCTGGGACATGCATCAGCCCCAAGATATTTAAGCCAAT
1 GTAAGACATGTCTGGGACATGCATCAGCCCCAAGATA-TCAAGCCAGT
* ** * *
19102365 GTAAGTCATGTCTGGGACATGCATTGGCCTCGCGAGATA-CAAGCTAGT
1 GTAAGACATGTCTGGGACATGCATCAGCC-C-CAAGATATCAAGCCAGT
*
19102413 GTAAGACCTGTCT
1 GTAAGACATGTCT
19102426 ATCAGCTTGT
Statistics
Matches: 91, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
46 29 0.32
47 2 0.02
48 51 0.56
49 3 0.03
50 6 0.07
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.23
Consensus pattern (47 bp):
GTAAGACATGTCTGGGACATGCATCAGCCCCAAGATATCAAGCCAGT
Found at i:19102976 original size:53 final size:53
Alignment explanation
Indices: 19102896--19103001 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
19102886 CGTTGGAGGC
19102896 ATTGATCACACTATCATTCGAAGCACTTAGTATAGTTAAAGCTTTTATTTTGA
1 ATTGATCACACTATCATTCGAAGCACTTAGTATAGTTAAAGCTTTTATTTTGA
19102949 ATTGATCACACTATCATTCGAAGCACTTAGTATAGTTAAAGCTTTTATTTTGA
1 ATTGATCACACTATCATTCGAAGCACTTAGTATAGTTAAAGCTTTTATTTTGA
19103002 TTATGGCATG
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (53 bp):
ATTGATCACACTATCATTCGAAGCACTTAGTATAGTTAAAGCTTTTATTTTGA
Found at i:19103693 original size:21 final size:20
Alignment explanation
Indices: 19103668--19103707 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
19103658 GTAATAATGA
* *
19103668 CCACACGGGCGTGTTGCCCTT
1 CCACACAGGAGTG-TGCCCTT
19103689 CCACACAGGAGTGTGCCCT
1 CCACACAGGAGTGTGCCCT
19103708 GTATCAAGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.38, G:0.28, T:0.20
Consensus pattern (20 bp):
CCACACAGGAGTGTGCCCTT
Found at i:19105750 original size:19 final size:19
Alignment explanation
Indices: 19105714--19105786 Score: 78
Period size: 19 Copynumber: 3.8 Consensus size: 19
19105704 GAGATGACAA
*
19105714 AGATGAGAATTG-AATATG
1 AGATGAGAAATGAAATATG
19105732 AGATGAGAAATGAAATATG
1 AGATGAGAAATGAAATATG
* *
19105751 AAATGATGAAATGATATATG
1 AGATGA-GAAATGAAATATG
*
19105771 A-ATTGTGAAATGAAAT
1 AGA-TGAGAAATGAAAT
19105787 CAAGTATTGA
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
18 11 0.23
19 21 0.45
20 15 0.32
ACGTcount: A:0.49, C:0.00, G:0.23, T:0.27
Consensus pattern (19 bp):
AGATGAGAAATGAAATATG
Found at i:19105759 original size:27 final size:27
Alignment explanation
Indices: 19105729--19105783 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
19105719 AGAATTGAAT
*
19105729 ATGAGATGAGAAATGAAATATGAAATG
1 ATGAAATGAGAAATGAAATATGAAATG
* * * *
19105756 ATGAAATGATATATGAATTGTGAAATG
1 ATGAAATGAGAAATGAAATATGAAATG
19105783 A
1 A
19105784 AATCAAGTAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.49, C:0.00, G:0.24, T:0.27
Consensus pattern (27 bp):
ATGAAATGAGAAATGAAATATGAAATG
Found at i:19121678 original size:32 final size:32
Alignment explanation
Indices: 19121642--19121702 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
19121632 TATGATGCCG
*
19121642 ATGCCATGTCCCAAACATGGTCTTACACTAGC
1 ATGCCAAGTCCCAAACATGGTCTTACACTAGC
*
19121674 ATGCCAAGTCCCAGACATGGTCTTACACT
1 ATGCCAAGTCCCAAACATGGTCTTACACT
19121703 GACTATCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (32 bp):
ATGCCAAGTCCCAAACATGGTCTTACACTAGC
Found at i:19121798 original size:50 final size:49
Alignment explanation
Indices: 19121676--19121802 Score: 152
Period size: 50 Copynumber: 2.6 Consensus size: 49
19121666 ACACTAGCAT
*
19121676 GCCAAGTCCCAGACATGGTCTTACACT-GACTATCAAAATCGAGGCTGAC
1 GCCATGTCCCAGACATGGTCTTACACTAGACTATCAAAATCGA-GCTGAC
* * *
19121725 GCCATGTCCCAGACATGGTCTTACACTAG-CTCTCACATATCCGTA-CTGAT
1 GCCATGTCCCAGACATGGTCTTACACTAGACTATCA-AAAT-CG-AGCTGAC
*
19121775 GTCATGTCCCAGACATGGTCTTACACTA
1 GCCATGTCCCAGACATGGTCTTACACTA
19121803 ACACCTTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
49 31 0.45
50 35 0.51
51 2 0.03
52 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (49 bp):
GCCATGTCCCAGACATGGTCTTACACTAGACTATCAAAATCGAGCTGAC
Found at i:19122141 original size:269 final size:269
Alignment explanation
Indices: 19121646--19122211 Score: 1078
Period size: 269 Copynumber: 2.1 Consensus size: 269
19121636 ATGCCGATGC
*
19121646 CATGTCCCAAACATGGTCTTACACTAGCATGCCAAGTCCCAGACATGGTCTTACACTGACTATCA
1 CATGTCCCAGACAT-GTCTTACACTAGCATGCCAAGTCCCAGACATGGTCTTACACTGACTATCA
*
19121711 AAATCGAGGCTGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTACTGATG
65 AAATCGAGGCTAACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTACTGATG
19121776 TCATGTCCCAGACATGGTCTTACACTAACACCTTTATACGTGCCGATGCCATGTCCCAGACATGA
130 TCATGTCCCAGACATGGTCTTACACTAACACCTTTATACGTGCCGATGCCATGTCCCAGACATGA
* *
19121841 TCTTAAACTGACACATCTCATAGCTGATGCATGTCCCAGACATGTCTTACACTGGGTTACATCTC
195 TCTTAAACTGACACATCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTAGGTTACATCTC
19121906 GAGCCCGATA
260 GAGCCCGATA
*
19121916 CATGTCCCAGACATGTCTTACACTAGCATGCCAAGTCCCAGACATGGTCTTACACTGACTATCGA
1 CATGTCCCAGACATGTCTTACACTAGCATGCCAAGTCCCAGACATGGTCTTACACTGACTATCAA
19121981 AATCGAGGCTAACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTACTGATGT
66 AATCGAGGCTAACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTACTGATGT
19122046 CATGTCCCAGACATGGTCTTACACTAACACCTTTATACGTGCCGATGCCATGTCCCAGACATGAT
131 CATGTCCCAGACATGGTCTTACACTAACACCTTTATACGTGCCGATGCCATGTCCCAGACATGAT
19122111 CTTAAACTGACACATCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTAGGTTACATCTCG
196 CTTAAACTGACACATCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTAGGTTACATCTCG
19122176 AGCCCGATA
261 AGCCCGATA
19122185 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
19122212 TCTCGTCTCA
Statistics
Matches: 291, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
269 278 0.96
270 13 0.04
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (269 bp):
CATGTCCCAGACATGTCTTACACTAGCATGCCAAGTCCCAGACATGGTCTTACACTGACTATCAA
AATCGAGGCTAACGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTACTGATGT
CATGTCCCAGACATGGTCTTACACTAACACCTTTATACGTGCCGATGCCATGTCCCAGACATGAT
CTTAAACTGACACATCTCATAGCCGATGCATGTCCCAGACATGTCTTACACTAGGTTACATCTCG
AGCCCGATA
Found at i:19122172 original size:46 final size:47
Alignment explanation
Indices: 19121994--19122256 Score: 163
Period size: 46 Copynumber: 5.6 Consensus size: 47
19121984 CGAGGCTAAC
* * * *
19121994 GCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTA-CTGAT
1 GCCATGTCCCAGACAT-GTCTTACACTAGGT-T-ACATCT-CATAGCCGAT
* * *
19122044 GTCATGTCCCAGACATGGTCTTACACTA----ACACCTTTATACGTGCCGAT
1 GCCATGTCCCAGACAT-GTCTTACACTAGGTTACATC-TCATA---GCCGAT
* **
19122092 GCCATGTCCCAGACATGATCTTAAACT--GACACATCTCATAGCCGAT
1 GCCATGTCCCAGACATG-TCTTACACTAGGTTACATCTCATAGCCGAT
*
19122138 G-CATGTCCCAGACATGTCTTACACTAGGTTACATCTC-GAGCCCGAT
1 GCCATGTCCCAGACATGTCTTACACTAGGTTACATCTCATAG-CCGAT
* * * *
19122184 -ACATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTCA-ATGCCAAT
1 GCCATGTCCCAGACATGTCTTACACTAGGT-TACATCTCATA-GCCGAT
* *
19122230 GCCATGTCCCAAACATGGTCGTACACT
1 GCCATGTCCCAGACAT-GTCTTACACT
19122257 GACTCTCATA
Statistics
Matches: 175, Mismatches: 20, Indels: 38
0.75 0.09 0.16
Matches are distributed among these distances:
44 13 0.07
45 18 0.10
46 57 0.33
47 16 0.09
48 36 0.21
49 4 0.02
50 31 0.18
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (47 bp):
GCCATGTCCCAGACATGTCTTACACTAGGTTACATCTCATAGCCGAT
Found at i:19125425 original size:57 final size:58
Alignment explanation
Indices: 19125331--19125468 Score: 165
Period size: 57 Copynumber: 2.4 Consensus size: 58
19125321 CATATAACAG
* ** * * *
19125331 GATTACCAGTCCAGGCTAAATACTTTTTGTAATATATGCTC-AGA-AGAACTTA-ATTAC
1 GATTACCAGTCCAGGCTAAATCCTAATTGTAACATATGCTCGAGAGAG-A-TTATATCAA
*
19125388 GTTTACCAGTCCAGGCTAAATCCTAATTGTAACATATGCTCGAGAGAGATTATATCAA
1 GATTACCAGTCCAGGCTAAATCCTAATTGTAACATATGCTCGAGAGAGATTATATCAA
*
19125446 GATTACTAGTCCAGGCTAAATCC
1 GATTACCAGTCCAGGCTAAATCC
19125469 CGTCAACAAC
Statistics
Matches: 69, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
57 39 0.57
58 28 0.41
59 2 0.03
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (58 bp):
GATTACCAGTCCAGGCTAAATCCTAATTGTAACATATGCTCGAGAGAGATTATATCAA
Found at i:19136207 original size:56 final size:56
Alignment explanation
Indices: 19136147--19136281 Score: 207
Period size: 56 Copynumber: 2.4 Consensus size: 56
19136137 CCCAGACAGG
* *
19136147 GTCTTACTCGCACACATATATCTGAGTCACATATCGATGCCAACATATAAAACGTA
1 GTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACATATAAAACATA
* * *
19136203 GTCTTACTCGCACACATTTATCGGAGTCACATATCGATGCCAACGTATAAAACATG
1 GTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACATATAAAACATA
* *
19136259 GTATTAATCGCACACATATATCG
1 GTCTTACTCGCACACATATATCG
19136282 AAGCCATGAT
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 71 1.00
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.27
Consensus pattern (56 bp):
GTCTTACTCGCACACATATATCGGAGTCACATATCGATGCCAACATATAAAACATA
Found at i:19137963 original size:2 final size:2
Alignment explanation
Indices: 19137956--19137988 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
19137946 ATCATTTGTT
19137956 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
19137989 GTATTGAACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:19142627 original size:18 final size:17
Alignment explanation
Indices: 19142604--19142646 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
19142594 TTTTTTAAAA
19142604 TATAAATTTTGGAAATTT
1 TATAAATTTT-GAAATTT
*
19142622 TATAAATATTTTAAATTT
1 TATAAAT-TTTGAAATTT
19142640 TA-AAATT
1 TATAAATT
19142647 ATTTTAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 1 0.04
17 4 0.17
18 15 0.65
19 3 0.13
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (17 bp):
TATAAATTTTGAAATTT
Found at i:19142658 original size:18 final size:18
Alignment explanation
Indices: 19142616--19142657 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
19142606 TAAATTTTGG
19142616 AAATTTTATAAATATTTT
1 AAATTTTATAAATATTTT
19142634 AAATTTTA-AAATTATTTT
1 AAATTTTATAAA-TATTTT
19142652 -AATTTT
1 AAATTTT
19142658 TTTGTAGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.39
18 14 0.61
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
AAATTTTATAAATATTTT
Found at i:19145729 original size:7 final size:7
Alignment explanation
Indices: 19145717--19145741 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
19145707 TTTTTTTGCC
19145717 ATTATAA
1 ATTATAA
19145724 ATTATAA
1 ATTATAA
19145731 ATTATAA
1 ATTATAA
19145738 ATTA
1 ATTA
19145742 ATTTTTTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
ATTATAA
Found at i:19146080 original size:39 final size:39
Alignment explanation
Indices: 19146000--19146118 Score: 130
Period size: 39 Copynumber: 3.1 Consensus size: 39
19145990 CTAGAACTAT
* * * *
19146000 TACTCAAATTCATATTGGAAACCCAATTTTGTATCCCAA
1 TACTCAAATTCATATTGGAAACTCAACTTTGTAACCAAA
* * *
19146039 TACTTAACTTCATATTGGAAACTCAACTTTGTAACAAAA
1 TACTCAAATTCATATTGGAAACTCAACTTTGTAACCAAA
* ** * *
19146078 TACTCAAATTCCTCCTGAAAACTCAACTTTATAACCAAA
1 TACTCAAATTCATATTGGAAACTCAACTTTGTAACCAAA
19146117 TA
1 TA
19146119 ATTTGTAAAA
Statistics
Matches: 65, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
39 65 1.00
ACGTcount: A:0.39, C:0.23, G:0.06, T:0.32
Consensus pattern (39 bp):
TACTCAAATTCATATTGGAAACTCAACTTTGTAACCAAA
Found at i:19152163 original size:13 final size:13
Alignment explanation
Indices: 19152145--19152171 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
19152135 GAGATAAAAG
19152145 AAAAAAAATTGAA
1 AAAAAAAATTGAA
19152158 AAAAAAAATTGAA
1 AAAAAAAATTGAA
19152171 A
1 A
19152172 CTATTGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.78, C:0.00, G:0.07, T:0.15
Consensus pattern (13 bp):
AAAAAAAATTGAA
Found at i:19153305 original size:12 final size:13
Alignment explanation
Indices: 19153291--19153336 Score: 56
Period size: 13 Copynumber: 3.2 Consensus size: 13
19153281 ATTATTTCCT
19153291 AAAATATATTATA
1 AAAATATATTATA
19153304 AAAATATATATAATA
1 AAAATATAT-T-ATA
19153319 ATAAATATATTTATA
1 A-AAATATA-TTATA
19153334 AAA
1 AAA
19153337 TCACATATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
13 9 0.31
14 3 0.10
15 8 0.28
16 8 0.28
17 1 0.03
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
AAAATATATTATA
Found at i:19153337 original size:29 final size:29
Alignment explanation
Indices: 19153292--19153354 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
19153282 TTATTTCCTA
*
19153292 AAATATATTATAAAAAT-ATATATAATAAT
1 AAATATATTATAAAAATCACATATAA-AAT
*
19153321 AAATATATT-TATAAAATCACATATAAATT
1 AAATATATTATA-AAAATCACATATAAAAT
19153350 AAATA
1 AAATA
19153355 AGTACTAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 2 0.07
29 21 0.70
30 7 0.23
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (29 bp):
AAATATATTATAAAAATCACATATAAAAT
Found at i:19155605 original size:20 final size:20
Alignment explanation
Indices: 19155576--19155616 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
19155566 TTGAGTATAA
*
19155576 TTATAAAATATATAATTTAT
1 TTATAAAATATATAAATTAT
* *
19155596 TTATACAATATCTAAATTAT
1 TTATAAAATATATAAATTAT
19155616 T
1 T
19155617 CATTATCCCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (20 bp):
TTATAAAATATATAAATTAT
Found at i:19163874 original size:32 final size:32
Alignment explanation
Indices: 19163833--19163908 Score: 113
Period size: 30 Copynumber: 2.4 Consensus size: 32
19163823 AAATGCACGA
19163833 TTGTGAAATGATAACAAATA-TCAACTTTAATT
1 TTGTGAAATGATAACAAATACT-AACTTTAATT
19163865 TTGTGAAATG--AACAAATACTAACTTTAATT
1 TTGTGAAATGATAACAAATACTAACTTTAATT
*
19163895 ATGTGAAATGATAA
1 TTGTGAAATGATAA
19163909 AAAGTACCAA
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
30 27 0.68
31 1 0.03
32 12 0.30
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.36
Consensus pattern (32 bp):
TTGTGAAATGATAACAAATACTAACTTTAATT
Found at i:19166520 original size:28 final size:28
Alignment explanation
Indices: 19166480--19166537 Score: 107
Period size: 28 Copynumber: 2.1 Consensus size: 28
19166470 TAAGAAATCT
*
19166480 TAACTTGTTGAGTGGTCCAAGTTTGTGA
1 TAACTTGTTGAGTGGTCCAAGTTCGTGA
19166508 TAACTTGTTGAGTGGTCCAAGTTCGTGA
1 TAACTTGTTGAGTGGTCCAAGTTCGTGA
19166536 TA
1 TA
19166538 TATATGGCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.22, C:0.12, G:0.28, T:0.38
Consensus pattern (28 bp):
TAACTTGTTGAGTGGTCCAAGTTCGTGA
Found at i:19169490 original size:69 final size:70
Alignment explanation
Indices: 19169358--19169490 Score: 214
Period size: 69 Copynumber: 1.9 Consensus size: 70
19169348 TAGTTTATTA
* * * * *
19169358 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAGATTTATGGTA
1 CTAATTAATATGCTGCTGTAATGCTGTAAATTATTGGCTATCCAAATTAGGACAAAATCATGGTA
19169423 CTTAG
66 CTTAG
19169428 CTAATTAATATGCTGCTGTAATGCT-TAAATTATTGGCTATCCAAATTAGGACAAAATCATGGT
1 CTAATTAATATGCTGCTGTAATGCTGTAAATTATTGGCTATCCAAATTAGGACAAAATCATGGT
19169491 GTTATGTGCT
Statistics
Matches: 58, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
69 34 0.59
70 24 0.41
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.37
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATGCTGTAAATTATTGGCTATCCAAATTAGGACAAAATCATGGTA
CTTAG
Found at i:19170301 original size:39 final size:39
Alignment explanation
Indices: 19170249--19170637 Score: 411
Period size: 39 Copynumber: 9.9 Consensus size: 39
19170239 ATTTGATGTA
* *
19170249 TATCTGGACTTAAGGTCCGCAGGCTTTGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * *
19170288 TATCTGGACTTAAGGTCCGCAAGCTTCGTGTTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
*
19170327 TATCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* ** * *
19170366 TATCCGGGCTTAAAGACCCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGACTT-AAGGTCCGCAGGCT-TCGTGCTGGAATTG
* ** * *
19170406 TATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTAGAATTG
1 TATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTG
19170446 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * * * *
19170485 TATCTGGGCTTAAAGACCTACAGGCTTCGTGCTGGAATTG
1 TATCCGGACTTAAGGTCC-GCAGGCTTCGTGCTGGAATTG
* * **
19170525 TATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTG
1 TATCCGGACTT-AAGGTCCGCAGGCTTCGTGCTGGAATTG
* * * * * * *
19170565 TATCCAGACTTAAGATCCGTAGGCTTCATGCTGGTACTA
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
* * *
19170604 TATTCGGACTTAAGGTTCGCAGGCTTCGTACTGG
1 TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGG
19170638 TACTATATCC
Statistics
Matches: 301, Mismatches: 44, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
39 171 0.57
40 125 0.42
41 5 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (39 bp):
TATCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTG
Found at i:19170456 original size:119 final size:118
Alignment explanation
Indices: 19170265--19170598 Score: 472
Period size: 119 Copynumber: 2.8 Consensus size: 118
19170255 GACTTAAGGT
* ** * *
19170265 CCGCAGGCTTTGTGCTGGAATTGTATCTGGACTT-AAGGTCCGCAAGCTTCGTGTTGGAATTGTA
1 CCGCAGGC-TTGTGCTGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTA
*
19170329 TCCGGACTTAAGGTCCGCAAGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
65 TCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
* * * * *
19170383 CCGCAGGCTATATGCTGGAATTATATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTAGAATTGTA
1 CCGCAGGCT-TGTGCTGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTA
*
19170448 TCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCTGGGCTTAAAGAC
65 TCCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
**
19170502 CTACAGGCTTCGTGCTGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTA
1 CCGCAGGCTT-GTGCTGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTA
* * * *
19170567 TCCAGACTTAAGATCCGTAGGCTTCATGCTGG
65 TCCGGACTTAAGGTCCGCAGGCTTCGTGCTGG
19170599 TACTATATTC
Statistics
Matches: 190, Mismatches: 23, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
117 1 0.01
118 29 0.15
119 160 0.84
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (118 bp):
CCGCAGGCTTGTGCTGGAATTGTATCTGGGCTTAAAGACCCGCAGGCTTCGTGCTGGAATTGTAT
CCGGACTTAAGGTCCGCAGGCTTCGTGCTGGAATTGTATCCGGGCTTAAAGAC
Found at i:19184439 original size:48 final size:48
Alignment explanation
Indices: 19184304--19184600 Score: 218
Period size: 48 Copynumber: 6.3 Consensus size: 48
19184294 CACATGAAAA
* * * * *
19184304 GATGCCAATGCCATG-CCCTAGACGTGGTCTTACATGGGATCTCACATC
1 GATGCCGATGCCATGTCCC-AGACATGGTCTTACACGGGATCTCATAAC
* * *
19184352 GATGCC-A--ACA--ACCCAG-CTATGGTCTTACAC-GAAGTCTCATAAC
1 GATGCCGATGCCATGTCCCAGAC-ATGGTCTTACACGGGA-TCTCATAAC
* * * *
19184395 -AGTGCCGATGCCATGTTCCAGACATGGTCTTATACGGGACCTCATATC
1 GA-TGCCGATGCCATGTCCCAGACATGGTCTTACACGGGATCTCATAAC
* * * * * *
19184443 GATTCCAATGCCATATCCTAGATATGGTCTTACATGGGATCTCAT-AC
1 GATGCCGATGCCATGTCCCAGACATGGTCTTACACGGGATCTCATAAC
* * * * *
19184490 TGATGCCGATGCCATGTCCCAGACGTAGTCTTATACGGGATCTCTTAAT
1 -GATGCCGATGCCATGTCCCAGACATGGTCTTACACGGGATCTCATAAC
* * * * **
19184539 GATGCCAATGCCATATCCCAAATATGGTCTTACACGGGATCTCATCTC
1 GATGCCGATGCCATGTCCCAGACATGGTCTTACACGGGATCTCATAAC
19184587 GATGCCGATGCCAT
1 GATGCCGATGCCAT
19184601 ACCCTGCCGG
Statistics
Matches: 189, Mismatches: 46, Indels: 28
0.72 0.17 0.11
Matches are distributed among these distances:
42 4 0.02
43 23 0.12
44 4 0.02
45 2 0.01
46 2 0.01
47 2 0.01
48 147 0.78
49 5 0.03
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (48 bp):
GATGCCGATGCCATGTCCCAGACATGGTCTTACACGGGATCTCATAAC
Found at i:19184497 original size:96 final size:96
Alignment explanation
Indices: 19184397--19184600 Score: 295
Period size: 96 Copynumber: 2.1 Consensus size: 96
19184387 CTCATAACAG
* * *
19184397 TGCCGATGCCATGTTCCAGACATGGTCTTATACGGGACCTCAT-ATCGATTCCAATGCCATATCC
1 TGCCGATGCCATGTCCCAGACATAGTCTTATACGGGACCTCATAAT-GATGCCAATGCCATATCC
* * *
19184461 TAGATATGGTCTTACATGGGATCTCATACT-GA
65 CAAATATGGTCTTACACGGGATCTCAT-CTCGA
* * *
19184493 TGCCGATGCCATGTCCCAGACGTAGTCTTATACGGGATCTCTTAATGATGCCAATGCCATATCCC
1 TGCCGATGCCATGTCCCAGACATAGTCTTATACGGGACCTCATAATGATGCCAATGCCATATCCC
19184558 AAATATGGTCTTACACGGGATCTCATCTCGA
66 AAATATGGTCTTACACGGGATCTCATCTCGA
19184589 TGCCGATGCCAT
1 TGCCGATGCCAT
19184601 ACCCTGCCGG
Statistics
Matches: 97, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
95 2 0.02
96 93 0.96
97 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (96 bp):
TGCCGATGCCATGTCCCAGACATAGTCTTATACGGGACCTCATAATGATGCCAATGCCATATCCC
AAATATGGTCTTACACGGGATCTCATCTCGA
Done.