Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 64 of 295
Found at i:19187407 original size:21 final size:21
Alignment explanation
Indices: 19187382--19187421 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
19187372 GTAAGAATAA
19187382 TAGAG-AATTTGAGAGATTTCT
1 TAGAGTAATTTGAGA-ATTTCT
*
19187403 TAGAGTGATTTGAGAATTT
1 TAGAGTAATTTGAGAATTT
19187422 TGTGTGATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.33, C:0.03, G:0.25, T:0.40
Consensus pattern (21 bp):
TAGAGTAATTTGAGAATTTCT
Found at i:19187601 original size:12 final size:12
Alignment explanation
Indices: 19187584--19187621 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
19187574 AAGATTTAAG
19187584 TATTTTAAATTT
1 TATTTTAAATTT
19187596 TATTTTAAATTT
1 TATTTTAAATTT
* *
19187608 T-TTATAAATAT
1 TATTTTAAATTT
19187619 TAT
1 TAT
19187622 AATTTATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
11 9 0.39
12 14 0.61
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
TATTTTAAATTT
Found at i:19187667 original size:35 final size:34
Alignment explanation
Indices: 19187592--19187669 Score: 86
Period size: 33 Copynumber: 2.3 Consensus size: 34
19187582 AGTATTTTAA
* * * * *
19187592 ATTTTATTTTAAATTTTTTATAAATATTATAATTT
1 ATTTT-TTTAAAATTTTTTATAAAAATAAAAAATT
19187627 A-TTTTTTAAAATTTTTTATAAAAATAAAAAAATT
1 ATTTTTTTAAAATTTTTTATAAAAAT-AAAAAATT
19187661 ATTTTTTTA
1 ATTTTTTTA
19187670 CAATAATTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
33 19 0.53
34 9 0.25
35 8 0.22
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (34 bp):
ATTTTTTTAAAATTTTTTATAAAAATAAAAAATT
Found at i:19187788 original size:23 final size:23
Alignment explanation
Indices: 19187755--19187834 Score: 94
Period size: 24 Copynumber: 3.5 Consensus size: 23
19187745 CATCTATTTC
*
19187755 TATTTATATATTTTTTAAGAATAA
1 TATTTA-ATATATTTTAAGAATAA
*
19187779 TATTTAATATGATTTTAA-AATCA
1 TATTTAATAT-ATTTTAAGAATAA
19187802 -A-TTAATATATTTTAAGAATAA
1 TATTTAATATATTTTAAGAATAA
19187823 TATTTAAGTATA
1 TATTTAA-TATA
19187835 CTGTCCACAA
Statistics
Matches: 48, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
20 7 0.15
21 11 0.23
22 2 0.04
23 12 0.25
24 16 0.33
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.49
Consensus pattern (23 bp):
TATTTAATATATTTTAAGAATAA
Found at i:19194729 original size:21 final size:24
Alignment explanation
Indices: 19194687--19194731 Score: 60
Period size: 21 Copynumber: 2.0 Consensus size: 24
19194677 TTAATAAGGA
19194687 ATTTTTGTTTCTTCTCTTCTCTTTT
1 ATTTTTGTTTCTTCTC-TCTCTTTT
19194712 ATTTTT-TTTCTT-TC-CTCTTT
1 ATTTTTGTTTCTTCTCTCTCTTT
19194732 CTTTTCGATG
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 6 0.30
23 2 0.10
24 6 0.30
25 6 0.30
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.73
Consensus pattern (24 bp):
ATTTTTGTTTCTTCTCTCTCTTTT
Found at i:19194734 original size:25 final size:25
Alignment explanation
Indices: 19194687--19194736 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
19194677 TTAATAAGGA
19194687 ATTTTTGTTTCTTCTCTTCTCTTTT
1 ATTTTTGTTTCTTCTCTTCTCTTTT
19194712 ATTTTT-TTTCTTTCCTCTT-TCTTTT
1 ATTTTTGTTTC-TT-CTCTTCTCTTTT
19194737 CGATGGCCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 4 0.17
25 14 0.61
26 5 0.22
ACGTcount: A:0.04, C:0.20, G:0.02, T:0.74
Consensus pattern (25 bp):
ATTTTTGTTTCTTCTCTTCTCTTTT
Found at i:19196127 original size:18 final size:19
Alignment explanation
Indices: 19196089--19196129 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
19196079 TTGGTTCATG
19196089 TTTCAATCTCATATCTCAA
1 TTTCAATCTCATATCTCAA
19196108 TTTCAATTCTCA-AT-TCAA
1 TTTCAA-TCTCATATCTCAA
19196126 TTTC
1 TTTC
19196130 TCATTTCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.38
19 8 0.38
20 5 0.24
ACGTcount: A:0.29, C:0.24, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTCAATCTCATATCTCAA
Found at i:19196730 original size:15 final size:15
Alignment explanation
Indices: 19196687--19196722 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
19196677 AATTCAATTC
19196687 AATTCAATCAATATA
1 AATTCAATCAATATA
19196702 AATTCAATCAATATA
1 AATTCAATCAATATA
19196717 AATTCA
1 AATTCA
19196723 TTATATATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (15 bp):
AATTCAATCAATATA
Found at i:19197629 original size:13 final size:12
Alignment explanation
Indices: 19197597--19197630 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
19197587 CTTTTATATA
19197597 TATATAATAACT
1 TATATAATAACT
19197609 TA-ATAATATACT
1 TATATAATA-ACT
19197621 TATATAATAA
1 TATATAATAA
19197631 GTAAACATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 6 0.30
12 8 0.40
13 6 0.30
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (12 bp):
TATATAATAACT
Found at i:19198031 original size:3 final size:3
Alignment explanation
Indices: 19198023--19198075 Score: 61
Period size: 3 Copynumber: 17.0 Consensus size: 3
19198013 ATCTTTAACT
* *
19198023 TAA TAA TAA TACC TAT TAAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TA-A TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
19198070 TTA TAA
1 TAA TAA
19198076 CATTAATATA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
3 39 0.91
4 4 0.09
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:19199370 original size:97 final size:99
Alignment explanation
Indices: 19199245--19199451 Score: 271
Period size: 97 Copynumber: 2.1 Consensus size: 99
19199235 ATTTTTAAAT
* ** *
19199245 TTTAGGG-TTTTAAGGAAAAAAATTAAATAAATTAAGGTTTAGTGTTTGTTAATTAAATTAATTA
1 TTTAGGGTTTTTAAGGAAAAAAATTAAATAAATTAAGGTTTAGGGTTACTTAAGTAAATTAATTA
* *
19199309 CT-AATTTT-AAAAAATTAGATTATG-TGTTTAGTG
66 -TAAATTTTAAAAAAATTAGATTAGGAT-TTTAGGG
* * *
19199342 TTTATGGTTTTTAAGG-AAAAAATTAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTA
1 TTTAGGGTTTTTAAGGAAAAAAATTAAATAAATTAAGGTTTAGGGTTACTTAAGTAAATTAATTA
19199406 TAAATTTTAAAAAAAATTAGATTAGGATTTTAGGG
66 TAAATTTT-AAAAAAATTAGATTAGGATTTTAGGG
19199441 TTTAGGGTTTT
1 TTTAGGGTTTT
19199452 AGGGTATTTA
Statistics
Matches: 95, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
96 1 0.01
97 54 0.57
98 8 0.08
99 31 0.33
100 1 0.01
ACGTcount: A:0.39, C:0.01, G:0.17, T:0.43
Consensus pattern (99 bp):
TTTAGGGTTTTTAAGGAAAAAAATTAAATAAATTAAGGTTTAGGGTTACTTAAGTAAATTAATTA
TAAATTTTAAAAAAATTAGATTAGGATTTTAGGG
Found at i:19199451 original size:15 final size:15
Alignment explanation
Indices: 19199427--19199456 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
19199417 AAAAATTAGA
19199427 TTAGGATTTTAGGGT
1 TTAGGATTTTAGGGT
*
19199442 TTAGGGTTTTAGGGT
1 TTAGGATTTTAGGGT
19199457 ATTTAAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (15 bp):
TTAGGATTTTAGGGT
Found at i:19200074 original size:126 final size:126
Alignment explanation
Indices: 19199536--19200063 Score: 815
Period size: 126 Copynumber: 4.2 Consensus size: 126
19199526 AAAAGCTTCT
* *
19199536 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAAATTTGAGAAGACGTGTCTGCGTAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
*
19199601 ATAGTGTCAAAAATGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * * *
19199662 ACATGGACGCTCTTTTGCTACAGTAGTATCTGAAAAAATAATTTTGAGAAGACGTGTTTGTGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* * * *
19199727 ATAGTGTAAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGCATTGAAAGAAGCTTCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
*
19199788 ACGTGGACGCTCTTTTGCTACAGTAGTCTTTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* * *
19199853 ATAGTGGT-AAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAATTACTGGAAGAAGCTCCC
66 ATAGT-GTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
* * * * **
19199914 ACGTGGATGCTCTTTTGCTTCAGTGGTCTCTGAAAAAATAATTTTGAGAAGATGTGTCTGCATAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* * *
19199979 ATAGTGTCAAAAATGCTTCAAGCAGGATGCATTTTCAGCAACAGTACTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
*
19200040 ACGTGGACGCTCTTTTACTACAGT
1 ACGTGGACGCTCTTTTGCTACAGT
19200064 GGTTTTTGAA
Statistics
Matches: 364, Mismatches: 36, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
125 2 0.01
126 360 0.99
127 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (126 bp):
ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTCCC
Found at i:19203457 original size:117 final size:116
Alignment explanation
Indices: 19203092--19203475 Score: 637
Period size: 116 Copynumber: 3.3 Consensus size: 116
19203082 TTTATATTTT
* *
19203092 ATTACATGAAATAATATAAAAATATTCAAAATATTGCTTTATTTAAAATAATTT-TCATTTTATT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCT-ATTTTATT
* * * *
19203156 AAAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCATTTATATT
65 AAAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
* * *
19203208 ATCACATGAAATAATATAAAAATATTTAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
19203273 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
19203324 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATT-
19203389 AAAAATATAAAAGTAAATTACAATTACTTTATTTCAAAA-AACCTTTTATCTA
65 AAAAATATAAAAGTAAATTACAATTACTTTATTT-AAAACAACCTTTTATCTA
*
19203441 ATTACATGAAATAATATAAAAAGATTCAAAATGTT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTT
19203476 TGTACAAATA
Statistics
Matches: 252, Mismatches: 13, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
116 167 0.66
117 81 0.32
118 4 0.02
ACGTcount: A:0.48, C:0.09, G:0.04, T:0.40
Consensus pattern (116 bp):
ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCTATTTTATTA
AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTATCTA
Found at i:19203892 original size:18 final size:18
Alignment explanation
Indices: 19203865--19203902 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
19203855 GAAAAATGAA
*
19203865 ACATATAAGGACTAGGAT
1 ACATAAAAGGACTAGGAT
*
19203883 ACATAAAAGGGCTAGGAT
1 ACATAAAAGGACTAGGAT
19203901 AC
1 AC
19203903 GTACCTGGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.45, C:0.13, G:0.24, T:0.18
Consensus pattern (18 bp):
ACATAAAAGGACTAGGAT
Found at i:19203997 original size:30 final size:30
Alignment explanation
Indices: 19203956--19204021 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
19203946 GTTGAACTGT
* *
19203956 TGGGCCCGGTGACTGTGTAGGTC-CTGTTGC
1 TGGGCCCGGTGACTGTGT-GGGCGCTGTTGA
* *
19203986 TGGGCCGGGTGATTGTGTGGGCGCTGTTGA
1 TGGGCCCGGTGACTGTGTGGGCGCTGTTGA
19204016 TGGGCC
1 TGGGCC
19204022 TGCATCGTCG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 3 0.10
30 28 0.90
ACGTcount: A:0.06, C:0.20, G:0.45, T:0.29
Consensus pattern (30 bp):
TGGGCCCGGTGACTGTGTGGGCGCTGTTGA
Found at i:19205451 original size:39 final size:39
Alignment explanation
Indices: 19205397--19205473 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
19205387 ATCCTTTATC
19205397 AACGGTGATGGAGGACCAGTCATGTTACGGATATAGCAA
1 AACGGTGATGGAGGACCAGTCATGTTACGGATATAGCAA
19205436 AACGGTGATGGAGGACCAGTCATGTTACGGATATAGCA
1 AACGGTGATGGAGGACCAGTCATGTTACGGATATAGCA
19205474 TTGCAATATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.32, C:0.16, G:0.31, T:0.21
Consensus pattern (39 bp):
AACGGTGATGGAGGACCAGTCATGTTACGGATATAGCAA
Found at i:19205746 original size:22 final size:22
Alignment explanation
Indices: 19205734--19205783 Score: 68
Period size: 20 Copynumber: 2.4 Consensus size: 22
19205724 TAATGAGAGT
19205734 TTTGAGAGGAATTTAAGAGAAA
1 TTTGAGAGGAATTTAAGAGAAA
* *
19205756 TTTGAGA-G-ATTTGAGAGGAA
1 TTTGAGAGGAATTTAAGAGAAA
19205776 TTTGAGAG
1 TTTGAGAG
19205784 AATATTGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 17 0.68
21 1 0.04
22 7 0.28
ACGTcount: A:0.38, C:0.00, G:0.32, T:0.30
Consensus pattern (22 bp):
TTTGAGAGGAATTTAAGAGAAA
Found at i:19205762 original size:31 final size:31
Alignment explanation
Indices: 19205727--19205785 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
19205717 AAAAAATTAA
*
19205727 TGAGAGTTTTGAGAGGAATTTAAGAGAAATT
1 TGAGAGATTTGAGAGGAATTTAAGAGAAATT
*
19205758 TGAGAGATTTGAGAGGAATTTGAGAGAA
1 TGAGAGATTTGAGAGGAATTTAAGAGAA
19205786 TATTGAAAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.39, C:0.00, G:0.32, T:0.29
Consensus pattern (31 bp):
TGAGAGATTTGAGAGGAATTTAAGAGAAATT
Found at i:19205791 original size:11 final size:10
Alignment explanation
Indices: 19205734--19205791 Score: 64
Period size: 11 Copynumber: 5.5 Consensus size: 10
19205724 TAATGAGAGT
19205734 TTTGAGAGGAA
1 TTTGAGA-GAA
*
19205745 TTTAAGAGAAA
1 TTTGAGAG-AA
19205756 TTTGAGAG-A
1 TTTGAGAGAA
19205765 TTTGAGAGGAA
1 TTTGAGA-GAA
19205776 TTTGAGAGAA
1 TTTGAGAGAA
19205786 TATTGA
1 T-TTGA
19205792 AAGATTGAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
9 8 0.20
10 6 0.15
11 27 0.66
ACGTcount: A:0.40, C:0.00, G:0.29, T:0.31
Consensus pattern (10 bp):
TTTGAGAGAA
Found at i:19205797 original size:31 final size:31
Alignment explanation
Indices: 19205734--19205797 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
19205724 TAATGAGAGT
*
19205734 TTTGAGAGGAATTTAAGAGAAATTTGAGAGA
1 TTTGAGAGGAATTTAAGAGAAATTTGAAAGA
*
19205765 TTTGAGAGGAATTTGAGAG-AATATTGAAAGA
1 TTTGAGAGGAATTTAAGAGAAAT-TTGAAAGA
19205796 TT
1 TT
19205798 GAAGATTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 3 0.10
31 27 0.90
ACGTcount: A:0.41, C:0.00, G:0.28, T:0.31
Consensus pattern (31 bp):
TTTGAGAGGAATTTAAGAGAAATTTGAAAGA
Found at i:19209988 original size:47 final size:47
Alignment explanation
Indices: 19209930--19210564 Score: 1009
Period size: 47 Copynumber: 13.5 Consensus size: 47
19209920 ATTCAGCCAA
*
19209930 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
19209977 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
19210024 GAAAGTGTATATGTGTGATAAGGCCTAATAGTCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
19210071 GAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
19210118 GGAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
19210167 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
19210214 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
19210261 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
19210308 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
*
19210355 GAAAGTGTATATATGTGATAAGGCCTAATCGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
19210402 GAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
19210449 GAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGAATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* * * * * * * * *
19210496 GAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTAATGGATGT
1 GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
* *
19210543 GAAAGTGCATAAATGTGATAAG
1 GAAAGTGTATATATGTGATAAG
19210565 TCCCGAAGGG
Statistics
Matches: 557, Mismatches: 29, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 511 0.92
49 46 0.08
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
GAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGT
Found at i:19210739 original size:37 final size:37
Alignment explanation
Indices: 19210683--19210761 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
19210673 CCGAGCTCTA
* * *
19210683 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCAATAACTACGTGTGGAG-ATTATGTCCGGGT
*
19210720 AAGACCCAATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCAATAACTACGTGTGGAGATTATGTCCGGGT
19210757 AAGAC
1 AAGAC
19210762 TTTGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (37 bp):
AAGACCCAATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:19212462 original size:9 final size:9
Alignment explanation
Indices: 19212450--19212487 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
19212440 TTATCTTACC
*
19212450 GATCTATCA
1 GATCTAACA
*
19212459 GATCTATCA
1 GATCTAACA
19212468 GATCTAACA
1 GATCTAACA
19212477 GATCTAACA
1 GATCTAACA
19212486 GA
1 GA
19212488 CTTACTCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.26
Consensus pattern (9 bp):
GATCTAACA
Found at i:19215346 original size:15 final size:16
Alignment explanation
Indices: 19215326--19215362 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
19215316 TTAGGGAAGA
*
19215326 GAATGATCCTGGT-TT
1 GAATGATCATGGTCTT
19215341 GAATGATCATGGTCTT
1 GAATGATCATGGTCTT
19215357 -AATGAT
1 GAATGAT
19215363 GATCCTATTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 18 0.90
16 2 0.10
ACGTcount: A:0.27, C:0.11, G:0.24, T:0.38
Consensus pattern (16 bp):
GAATGATCATGGTCTT
Found at i:19216616 original size:19 final size:20
Alignment explanation
Indices: 19216574--19216616 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
19216564 GTGGACATAG
* *
19216574 GGACACGCCCGTGTGCCTTA
1 GGACAAGCCCGTGTGCCTCA
19216594 -GACAAGCCCGTGT-CCTCA
1 GGACAAGCCCGTGTGCCTCA
19216612 GGACA
1 GGACA
19216617 TTTAACTCTC
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
18 4 0.20
19 16 0.80
ACGTcount: A:0.21, C:0.35, G:0.28, T:0.16
Consensus pattern (20 bp):
GGACAAGCCCGTGTGCCTCA
Found at i:19218721 original size:93 final size:93
Alignment explanation
Indices: 19218548--19218808 Score: 324
Period size: 93 Copynumber: 2.8 Consensus size: 93
19218538 CATCAAAGTA
* * * * *
19218548 AATGCCATGTCCCAGACAGGTTTTACGCTGACTTTCATATATCGAGGCTGATGCCATGTCCTAGA
1 AATGCCATGTCCCAGACAGGTCTTACACTGAC--ACACA-A-C-AAGCTGATGCCATGTCCTAGA
* * **
19218613 CAGATCTTACACTGGCTCTCATCTGTCGGTGTC
61 CAGGTCTTACACTGGCTCTCATCTATCGGCCTC
* * *
19218646 GATGCCATGTCCCAGACAGGTCTTACACTGACACACAACAAGCTGATGCCATGTCCCAGATAGGT
1 AATGCCATGTCCCAGACAGGTCTTACACTGACACACAACAAGCTGATGCCATGTCCTAGACAGGT
*
19218711 TTTACACTGGCTCTCATCTATCGGCCTC
66 CTTACACTGGCTCTCATCTATCGGCCTC
* * * *
19218739 AATGCCATGTCCCAGACAGGTCTTACATTAACACACAACAAGTTGATACCATGTCCTAGACAGGT
1 AATGCCATGTCCCAGACAGGTCTTACACTGACACACAACAAGCTGATGCCATGTCCTAGACAGGT
19218804 CTTAC
66 CTTAC
19218809 TCTAGCTTGT
Statistics
Matches: 142, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
93 108 0.76
94 1 0.01
95 1 0.01
96 3 0.02
98 29 0.20
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (93 bp):
AATGCCATGTCCCAGACAGGTCTTACACTGACACACAACAAGCTGATGCCATGTCCTAGACAGGT
CTTACACTGGCTCTCATCTATCGGCCTC
Found at i:19218749 original size:49 final size:47
Alignment explanation
Indices: 19218549--19218765 Score: 206
Period size: 49 Copynumber: 4.6 Consensus size: 47
19218539 ATCAAAGTAA
* * * *
19218549 ATGCCATGTCCCAGACAGGTTTTACGCTGACTTTCATATATCGAGGCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATCTATC--GGCTG
* * * * *
19218598 ATGCCATGTCCTAGACAGATCTTACACTGGCTCTCATCTGTCGGTGTCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATCTATCGG-CT-G
* * * *
19218647 ATGCCATGTCCCAGACAGGTCTTACACTGACACACAAC-A--AGCTG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATCTATCGGCTG
* * * *
19218691 ATGCCATGTCCCAGATAGGTTTTACACTGGCTCTCATCTATCGGCCTCA
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATCTATCGG-CT-G
19218740 ATGCCATGTCCCAGACAGGTCTTACA
1 ATGCCATGTCCCAGACAGGTCTTACA
19218766 TTAACACACA
Statistics
Matches: 133, Mismatches: 28, Indels: 14
0.76 0.16 0.08
Matches are distributed among these distances:
44 33 0.25
45 2 0.02
46 1 0.01
47 3 0.02
48 3 0.02
49 91 0.68
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (47 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATCTATCGGCTG
Found at i:19218899 original size:46 final size:46
Alignment explanation
Indices: 19218839--19218954 Score: 137
Period size: 46 Copynumber: 2.5 Consensus size: 46
19218829 GTCGATACAG
* * * *
19218839 GTCCCAGACGTGTCTTACACTAGCTCTCGTCTCAT-TGTC-AATGCAT
1 GTCCCAGACATGTCTTACACTAGCTCT--TATAATCTGGCTAATGCAT
* *
19218885 GTCCCAGACATGTCTTACACTGGCTCTTATAATCTGGCTGATGCAT
1 GTCCCAGACATGTCTTACACTAGCTCTTATAATCTGGCTAATGCAT
*
19218931 GTCCCAAACATGTCTTACACTAGC
1 GTCCCAGACATGTCTTACACTAGC
19218955 ACACATATCA
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
44 4 0.07
45 3 0.05
46 53 0.88
ACGTcount: A:0.22, C:0.29, G:0.17, T:0.31
Consensus pattern (46 bp):
GTCCCAGACATGTCTTACACTAGCTCTTATAATCTGGCTAATGCAT
Found at i:19219366 original size:34 final size:34
Alignment explanation
Indices: 19219321--19219387 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
19219311 ATTTAAGCCC
* *
19219321 AAATCTTGATTTTCTTGATCTAACATGATGAAAA
1 AAATCTCGATTTTATTGATCTAACATGATGAAAA
19219355 AAATCTCGATTTTATTGATCTAACATGATGAAA
1 AAATCTCGATTTTATTGATCTAACATGATGAAA
19219388 TTCACTCATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (34 bp):
AAATCTCGATTTTATTGATCTAACATGATGAAAA
Found at i:19219604 original size:20 final size:20
Alignment explanation
Indices: 19219579--19219617 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
19219569 AAAATTTCAA
19219579 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
19219599 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
19219618 AATAGATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:19227288 original size:30 final size:30
Alignment explanation
Indices: 19227254--19227314 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
19227244 TCCTTAACTC
19227254 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
19227284 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
19227314 A
1 A
19227315 GGCTCGAGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:19229978 original size:44 final size:45
Alignment explanation
Indices: 19229777--19229983 Score: 186
Period size: 46 Copynumber: 4.5 Consensus size: 45
19229767 TTGTGTACTG
* * * * *
19229777 GTGTAAGGCATGTCTGGCACATGCATCGGCCAC-ATTATGAGAGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GATG-TAGCCA
* * * * * * * *
19229823 GTGTAAGACCATGTCTGGGATATGGTATTGGCATTGAGACGAGAGCTA
1 GTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATG-TAGCCA
* *
19229871 GTGTAAGACATGTTTGGGATATGCATCGGCCTCGAGATGTAAGCCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGT-AGCCA
*
19229917 GTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGT-GTCA
1 GTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGTAGCCA
19229961 GTGTAAGACATGTCTGGGACATG
1 GTGTAAGACATGTCTGGGACATG
19229984 GCATTAGAAC
Statistics
Matches: 134, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
44 26 0.19
45 2 0.01
46 58 0.43
47 25 0.19
48 22 0.16
49 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.25
Consensus pattern (45 bp):
GTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTAGCCA
Found at i:19230121 original size:96 final size:97
Alignment explanation
Indices: 19229957--19230137 Score: 253
Period size: 96 Copynumber: 1.9 Consensus size: 97
19229947 TACGAGATGT
* *
19229957 GTCAGTGTAAGACATGTCTGGGACATGGCATTAGAACGGATATGTGAGATCTAGTGTAAGACCAT
1 GTCAGTGTAAGACATGTCTAGGACATGGCATTAGAACGGA-ATGTGAGAGCTAGTGTAAGACCAT
* *
19230022 GTCTGGGACATGGCGTCAGCCTCGATTTCGATA
65 GTCTAGGACATGGCATCAGCCTCGATTTCGATA
*
19230055 GTCAGTGTAAGACCATGTCTAGGACATGGCATT-G-ACTTG-ATG-GATGAGCTAGTGTAAGACC
1 GTCAGTGTAAGA-CATGTCTAGGACATGGCATTAGAAC-GGAATGTGA-GAGCTAGTGTAAGACC
19230116 ATGTCTAGGACATGGCATCAGC
63 ATGTCTAGGACATGGCATCAGC
19230138 TTTATACCCA
Statistics
Matches: 75, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
95 2 0.03
96 38 0.51
97 2 0.03
98 14 0.19
99 19 0.25
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (97 bp):
GTCAGTGTAAGACATGTCTAGGACATGGCATTAGAACGGAATGTGAGAGCTAGTGTAAGACCATG
TCTAGGACATGGCATCAGCCTCGATTTCGATA
Found at i:19237238 original size:30 final size:32
Alignment explanation
Indices: 19237204--19237339 Score: 111
Period size: 32 Copynumber: 4.3 Consensus size: 32
19237194 GTCAGCTCAA
*
19237204 GCCCATTTCAGATAACAGT-AC-GGCCCATAG
1 GCCCATTTCAGATAACAATAACTGGCCCATAG
* * *
19237234 GCCCATTTCAGATTACAATAAACTGGGCCAGA-
1 GCCCATTTCAGATAACAAT-AACTGGCCCATAG
* * * *
19237266 GCCCTTTTCAGATTACAATAAACTGGGCCTTAG
1 GCCCATTTCAGATAACAAT-AACTGGCCCATAG
* * *
19237299 CCCCTTATTCAGATAACAGT-A-TGGCCCATAG
1 GCCCAT-TTCAGATAACAATAACTGGCCCATAG
19237330 GCCCATTTCA
1 GCCCATTTCA
19237340 AAATACATGC
Statistics
Matches: 87, Mismatches: 14, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
30 21 0.24
31 12 0.14
32 32 0.37
33 11 0.13
34 11 0.13
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (32 bp):
GCCCATTTCAGATAACAATAACTGGCCCATAG
Found at i:19237280 original size:32 final size:32
Alignment explanation
Indices: 19237234--19237312 Score: 113
Period size: 32 Copynumber: 2.4 Consensus size: 32
19237224 CGGCCCATAG
*
19237234 GCCCATTTCAGATTACAATAAACTGGGCCAGA
1 GCCCTTTTCAGATTACAATAAACTGGGCCAGA
**
19237266 GCCCTTTTCAGATTACAATAAACTGGGCCTTA
1 GCCCTTTTCAGATTACAATAAACTGGGCCAGA
19237298 GCCCCTTATTCAGAT
1 G-CCCTT-TTCAGAT
19237313 AACAGTATGG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
32 30 0.71
33 5 0.12
34 7 0.17
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (32 bp):
GCCCTTTTCAGATTACAATAAACTGGGCCAGA
Found at i:19237480 original size:137 final size:137
Alignment explanation
Indices: 19237255--19237518 Score: 510
Period size: 137 Copynumber: 1.9 Consensus size: 137
19237245 ATTACAATAA
*
19237255 ACTGGGCCAGAGCCCTTTTCAGATTACAATAAACTGGGCCTTAGCCCCTTATTCAGATAACAGTA
1 ACTGGGCCAGAGCCCTTTTCAGATTACAATAAACCGGGCCTTAGCCCCTTATTCAGATAACAGTA
*
19237320 TGGCCCATAGGCCCATTTCAAAATACATGCAACATCAGTAAACATATGCAAGCCCATTTGGGTAA
66 TGGCCCATAGGCCCAGTTCAAAATACATGCAACATCAGTAAACATATGCAAGCCCATTTGGGTAA
19237385 CAATGGT
131 CAATGGT
19237392 ACTGGGCCAGAGCCCTTTTCAGATTACAATAAACCGGGCCTTAGCCCCTTATTCAGATAACAGTA
1 ACTGGGCCAGAGCCCTTTTCAGATTACAATAAACCGGGCCTTAGCCCCTTATTCAGATAACAGTA
19237457 TGGCCCATAGGCCCAGTTCAAAATACATGCAACATCAGTAAACATATGCAAGCCCATTTGGG
66 TGGCCCATAGGCCCAGTTCAAAATACATGCAACATCAGTAAACATATGCAAGCCCATTTGGG
19237519 GAGACTACTC
Statistics
Matches: 125, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
137 125 1.00
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.24
Consensus pattern (137 bp):
ACTGGGCCAGAGCCCTTTTCAGATTACAATAAACCGGGCCTTAGCCCCTTATTCAGATAACAGTA
TGGCCCATAGGCCCAGTTCAAAATACATGCAACATCAGTAAACATATGCAAGCCCATTTGGGTAA
CAATGGT
Found at i:19239373 original size:40 final size:40
Alignment explanation
Indices: 19239318--19239394 Score: 145
Period size: 40 Copynumber: 1.9 Consensus size: 40
19239308 ATCATGGAAC
19239318 ATTTACCTAAACCATTATCATGGAACATTTACCTAACAAT
1 ATTTACCTAAACCATTATCATGGAACATTTACCTAACAAT
*
19239358 ATTTACCTAATCCATTATCATGGAACATTTACCTAAC
1 ATTTACCTAAACCATTATCATGGAACATTTACCTAAC
19239395 CCATTATCAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.38, C:0.23, G:0.05, T:0.34
Consensus pattern (40 bp):
ATTTACCTAAACCATTATCATGGAACATTTACCTAACAAT
Found at i:19239939 original size:49 final size:49
Alignment explanation
Indices: 19239874--19239999 Score: 234
Period size: 49 Copynumber: 2.6 Consensus size: 49
19239864 ATGTGAAAGC
19239874 TAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGATTTCAATAGT
1 TAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGATTTCAATAGT
* *
19239923 TAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTTGATTTCAATAGT
1 TAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGATTTCAATAGT
19239972 TAGTGTAAGACCATGTCTGGGACATGGC
1 TAGTGTAAGACCATGTCTGGGACATGGC
19240000 ATCGACTTGA
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
49 75 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.29
Consensus pattern (49 bp):
TAGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGATTTCAATAGT
Found at i:19240041 original size:47 final size:48
Alignment explanation
Indices: 19239827--19240048 Score: 209
Period size: 49 Copynumber: 4.6 Consensus size: 48
19239817 GATGTGTCAA
* * * *
19239827 TGTAAGACCATGTTTGGGATATGGCATCGGCAC-AGATATGTGAA-AGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGG-ACTTG--AT-TCAATAGCTAG
* * * * *
19239877 TGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGATTTCAATAGTTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGACTTGA-TTCAATAGCTAG
* * *
19239926 TGTAAGACCATGTCTGGGACATGGCGTCGGCCTTGATTTCAATAGTTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGACTTGA-TTCAATAGCTAG
**
19239975 TGTAAGACCATGTCTGGGACATGGCATC-GACTTGA-TGGATGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGACTTGATTCAAT-AGCTAG
* *
19240022 TGTAAGACCGTGTCAGGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
19240049 TGGCATCATA
Statistics
Matches: 151, Mismatches: 17, Indels: 11
0.84 0.09 0.06
Matches are distributed among these distances:
46 3 0.02
47 30 0.20
48 10 0.07
49 81 0.54
50 27 0.18
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGACTTGATTCAATAGCTAG
Found at i:19241243 original size:20 final size:21
Alignment explanation
Indices: 19241204--19241243 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
19241194 GTTATAATGA
19241204 CCACACAGGCATGTTGCCCTT
1 CCACACAGGCATGTTGCCCTT
* *
19241225 CCACACGGGCGTG-TGCCCT
1 CCACACAGGCATGTTGCCCT
19241244 GTTTCAAGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (21 bp):
CCACACAGGCATGTTGCCCTT
Found at i:19244829 original size:49 final size:49
Alignment explanation
Indices: 19244727--19245093 Score: 185
Period size: 49 Copynumber: 7.8 Consensus size: 49
19244717 CATCAAAGTC
* * * * * * * **
19244727 GATGCCATGTCCTAGATAGGTCTTACATTGACTTTCATTTATTGAG-GCC
1 GATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATAG-GTGTT
* *
19244776 GATGCCATGTCCCAGACAGGTCTTTCACTGGCTCTCATCTATCGGTGTT
1 GATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATAGGTGTT
* * * * ***
19244825 GATGCCATGTCCCAAACAGATCTTACACT-G-ACACA-C-A-AAAAGTT
1 GATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATAGGTGTT
* * * * *
19244869 GATGCCATGTCCCAGACAGGTCTTACATTGACTCTTATCTATTGGTGTC
1 GATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATAGGTGTT
* * * * * *
19244918 GATGCCATGTCCTAGACAGGTCTGACACTGACACACAAC-A-A---GTT
1 GATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATAGGTGTT
* * * * **
19244962 GATACCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCT-T-GAG-GCC
1 GATGCCATGTCCCAGACAGGTCTTACACTGGC-TCT-CATCTATAG-GTGTT
* * * * * *
19245011 GATG-CATGTCCCAGAGATGTCTTACACTAGCTCTCGTCT-CA-GTGCT
1 GATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATAGGTGTT
* *
19245057 GATG-CATGTCCCAGACATGTCTTACGCTGGCTCTCAT
1 GATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCAT
19245094 AATGTGGCCG
Statistics
Matches: 239, Mismatches: 64, Indels: 33
0.71 0.19 0.10
Matches are distributed among these distances:
44 58 0.24
45 2 0.01
46 43 0.18
47 6 0.03
48 29 0.12
49 101 0.42
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.29
Consensus pattern (49 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATAGGTGTT
Found at i:19244887 original size:93 final size:93
Alignment explanation
Indices: 19244776--19244990 Score: 322
Period size: 93 Copynumber: 2.3 Consensus size: 93
19244766 TATTGAGGCC
* * *
19244776 GATGCCATGTCCCAGACAGGTCTTTCACTGGCTCTCATCTATCGGTGTTGATGCCATGTCCCAAA
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATCTATCGGTGTCGATGCCATGTCCCAAA
*
19244841 CAGATCTTACACTGACACACAAAAAGTT
66 CAGATCTGACACTGACACACAAAAAGTT
* * * * *
19244869 GATGCCATGTCCCAGACAGGTCTTACATTGACTCTTATCTATTGGTGTCGATGCCATGTCCTAGA
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATCTATCGGTGTCGATGCCATGTCCCAAA
* *
19244934 CAGGTCTGACACTGACACACAACAAGTT
66 CAGATCTGACACTGACACACAAAAAGTT
*
19244962 GATACCATGTCCCAGACAGGTCTTACACT
1 GATGCCATGTCCCAGACAGGTCTTACACT
19244991 AGCTTGTATA
Statistics
Matches: 109, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 109 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (93 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATCTATCGGTGTCGATGCCATGTCCCAAA
CAGATCTGACACTGACACACAAAAAGTT
Found at i:19244893 original size:44 final size:44
Alignment explanation
Indices: 19244822--19244990 Score: 185
Period size: 44 Copynumber: 3.7 Consensus size: 44
19244812 ATCTATCGGT
* *
19244822 GTTGATGCCATGTCCCAAACAGATCTTACACTGACACACAAAAA
1 GTTGATGCCATGTCCCAGACAGGTCTTACACTGACACACAAAAA
* * * ***
19244866 GTTGATGCCATGTCCCAGACAGGTCTTACATTGACTCTTATCTATTG
1 GTTGATGCCATGTCCCAGACAGGTCTTACACTGACAC--A-CAAAAA
* * *
19244913 GTGTCGATGCCATGTCCTAGACAGGTCTGACACTGACACACAACAA
1 GT-T-GATGCCATGTCCCAGACAGGTCTTACACTGACACACAAAAA
*
19244959 GTTGATACCATGTCCCAGACAGGTCTTACACT
1 GTTGATGCCATGTCCCAGACAGGTCTTACACT
19244991 AGCTTGTATA
Statistics
Matches: 101, Mismatches: 19, Indels: 10
0.78 0.15 0.08
Matches are distributed among these distances:
44 59 0.58
45 1 0.01
46 5 0.05
47 5 0.05
48 1 0.01
49 30 0.30
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (44 bp):
GTTGATGCCATGTCCCAGACAGGTCTTACACTGACACACAAAAA
Found at i:19245014 original size:93 final size:93
Alignment explanation
Indices: 19244780--19245023 Score: 264
Period size: 93 Copynumber: 2.6 Consensus size: 93
19244770 GAGGCCGATG
* * * * * **
19244780 CCATGTCCCAGACAGGTCTTTCACT-GGCTCTCATCTATCGGTGTTGATGCCATGTCCCAAACAG
1 CCATGTCCCAGACAGGTCTTACA-TAGACTCTTATATATTGGTGCCGATGCCATGTCCCAAACAG
* *
19244844 ATCTTACACTGACACACAAAAAGTTGATG
65 ATCTGACACTGACACACAAAAAGTTGATA
* * * * * *
19244873 CCATGTCCCAGACAGGTCTTACATTGACTCTTATCTATTGGTGTCGATGCCATGTCCTAGACAGG
1 CCATGTCCCAGACAGGTCTTACATAGACTCTTATATATTGGTGCCGATGCCATGTCCCAAACAGA
*
19244938 TCTGACACTGACACACAACAAGTTGATA
66 TCTGACACTGACACACAAAAAGTTGATA
*
19244966 CCATGTCCCAGACAGGTCTTACACTAG-CT-TGTATATCTTGAG-GCCGATG-CATGTCCCA
1 CCATGTCCCAGACAGGTCTTACA-TAGACTCT-TATATATTG-GTGCCGATGCCATGTCCCA
19245024 GAGATGTCTT
Statistics
Matches: 131, Mismatches: 16, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
92 10 0.08
93 118 0.90
94 3 0.02
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.27
Consensus pattern (93 bp):
CCATGTCCCAGACAGGTCTTACATAGACTCTTATATATTGGTGCCGATGCCATGTCCCAAACAGA
TCTGACACTGACACACAAAAAGTTGATA
Found at i:19245077 original size:46 final size:45
Alignment explanation
Indices: 19244967--19245133 Score: 151
Period size: 46 Copynumber: 3.6 Consensus size: 45
19244957 AAGTTGATAC
* * * *
19244967 CATGTCCCAGACAGGTCTTACACTAGCTTGTATATCTTGAG-GCCGATG
1 CATGTCCCAGACATGTCTTACACTAGC---TCTCTC-TAAGTGCCGATG
* * *
19245015 CATGTCCCAGAGATGTCTTACACTAGCTCTCGTCTCAGTGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTC-TCTAAGTGCCGATG
* * *
19245061 CATGTCCCAGACATGTCTTACGCTGGCTCTC-ATAATGTGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCTCTAA-GT-GCCGATG
19245107 CATG-CCTCAGACATGTCTTACACTAGC
1 CATGTCC-CAGACATGTCTTACACTAGC
19245134 ACACATATCA
Statistics
Matches: 100, Mismatches: 14, Indels: 12
0.79 0.11 0.10
Matches are distributed among these distances:
44 2 0.02
45 9 0.09
46 64 0.64
48 25 0.25
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.29
Consensus pattern (45 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCTCTAAGTGCCGATG
Found at i:19245748 original size:20 final size:20
Alignment explanation
Indices: 19245723--19245761 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
19245713 AAAAATTCAA
19245723 TTATTTCAC-ACATTTACAAC
1 TTATTTCACAAC-TTTACAAC
*
19245743 TTATTTTACAACTTTACAA
1 TTATTTCACAACTTTACAA
19245762 AATAACCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 15 0.88
21 2 0.12
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATTTCACAACTTTACAAC
Found at i:19249593 original size:140 final size:140
Alignment explanation
Indices: 19249341--19249608 Score: 491
Period size: 140 Copynumber: 1.9 Consensus size: 140
19249331 CATATTCAAC
*
19249341 TCAAATAGCTATTCATCACTATTCAGTAGCACATAAGCAATAATAATTCAATTCAAAACACATTT
1 TCAAATAGCTATCCATCACTATTCAGTAGCACATAAGCAATAATAATTCAATTCAAAACACATTT
*
19249406 ATTTGTATATCGACTTACCTCGTACAGGAATGAACGAAAAAGAACGGCTATTCAACTATTTTTCA
66 ATTTGTATATCGACTTACCTCATACAGGAATGAACGAAAAAGAACGGCTATTCAACTATTTTTCA
19249471 AATAGTTAGG
131 AATAGTTAGG
*
19249481 TCAAATAGCTATCCATCACTATTCAGTAGCATATAAGCAATAATAATTCAATTCAAAACACATTT
1 TCAAATAGCTATCCATCACTATTCAGTAGCACATAAGCAATAATAATTCAATTCAAAACACATTT
* *
19249546 ATTTGTATATCGACTTACCTCATACAGGAGTGAATGAAAAAGAACGGCTATTCAACTATTTTT
66 ATTTGTATATCGACTTACCTCATACAGGAATGAACGAAAAAGAACGGCTATTCAACTATTTTT
19249609 GACTTTCCCC
Statistics
Matches: 123, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
140 123 1.00
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.31
Consensus pattern (140 bp):
TCAAATAGCTATCCATCACTATTCAGTAGCACATAAGCAATAATAATTCAATTCAAAACACATTT
ATTTGTATATCGACTTACCTCATACAGGAATGAACGAAAAAGAACGGCTATTCAACTATTTTTCA
AATAGTTAGG
Found at i:19252322 original size:49 final size:48
Alignment explanation
Indices: 19252225--19252442 Score: 181
Period size: 49 Copynumber: 4.6 Consensus size: 48
19252215 TTTGTGTGCT
* *
19252225 AGTGTAAGGCATGTCTGGGACAT--GCATCGGCCAT--ATTAT-TAGAGCC
1 AGTGTAAGACATGTCTGGGACATAGGCATCGGCC-TCGA-GATGTA-AGCC
*
19252271 AGTGTAAGACCATGTCTGGGACATAGGAATCGGCCTCGAGATGTAAGCC
1 AGTGTAAGA-CATGTCTGGGACATAGGCATCGGCCTCGAGATGTAAGCC
* * *
19252320 AGTGGAAGACATGTCTGGGACATA--CATCGG-CTACGAGAAGT--GTC
1 AGTGTAAGACATGTCTGGGACATAGGCATCGGCCT-CGAGATGTAAGCC
* * * *
19252364 AGTGTAAGACATGTCTGGGACAT-GGCATCGGCGTGGATATGTGAGAGCT
1 AGTGTAAGACATGTCTGGGACATAGGCATCGGCCTCGAGATGT-A-AGCC
*
19252413 AGTGTAAGACCATGTCTAGGACAT-GGCATC
1 AGTGTAAGA-CATGTCTGGGACATAGGCATC
19252443 AGTCTTGATT
Statistics
Matches: 142, Mismatches: 15, Indels: 26
0.78 0.08 0.14
Matches are distributed among these distances:
44 24 0.17
45 13 0.09
46 21 0.15
47 14 0.10
48 16 0.11
49 32 0.23
50 22 0.15
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATAGGCATCGGCCTCGAGATGTAAGCC
Found at i:19252378 original size:44 final size:45
Alignment explanation
Indices: 19252220--19252395 Score: 158
Period size: 44 Copynumber: 3.8 Consensus size: 45
19252210 GGTTATTTGT
* * * ** **
19252220 GTGCTAGTGTAAGGCATGTCTGGGACATGCATCGGCCATATTATTA
1 GTGCCAGTGTAAGACATGTCTGGGACATACATCGGCC-TACGAGAA
* * *
19252266 GAGCCAGTGTAAGACCATGTCTGGGACATAGGAATCGGCCT-CGAGAT
1 GTGCCAGTGTAAGA-CATGTCTGGGACATA--CATCGGCCTACGAGAA
*
19252313 GTAAGCCAGTGGAAGACATGTCTGGGACATACATCGG-CTACGAGAA
1 GT--GCCAGTGTAAGACATGTCTGGGACATACATCGGCCTACGAGAA
* *
19252359 GTGTCAGTGTAAGACATGTCTGGGACATGGCATCGGC
1 GTGCCAGTGTAAGACATGTCTGGGACAT-ACATCGGC
19252396 GTGGATATGT
Statistics
Matches: 105, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
44 24 0.23
45 8 0.08
46 23 0.22
47 16 0.15
48 16 0.15
49 18 0.17
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (45 bp):
GTGCCAGTGTAAGACATGTCTGGGACATACATCGGCCTACGAGAA
Found at i:19252468 original size:49 final size:48
Alignment explanation
Indices: 19252415--19252538 Score: 144
Period size: 47 Copynumber: 2.6 Consensus size: 48
19252405 TGAGAGCTAG
* * *
19252415 TGTAAGACCATGTCTAGGACATGGCATCAGTCTTGATTTTGAT-AGTCAA
1 TGTAAGACCATGTCTAGGACATGGCATCAGACTTGA--TGGATGAGCCAA
* * *
19252464 TGTAAGACCATGTCTAGGACATGGGAT-TGACTTGATGGATGAGCCAG
1 TGTAAGACCATGTCTAGGACATGGCATCAGACTTGATGGATGAGCCAA
* *
19252511 TGTCAGACCATGTCTGGGACATGGCATC
1 TGTAAGACCATGTCTAGGACATGGCATC
19252539 GGCATTATAC
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
46 4 0.06
47 28 0.44
48 6 0.09
49 26 0.41
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28
Consensus pattern (48 bp):
TGTAAGACCATGTCTAGGACATGGCATCAGACTTGATGGATGAGCCAA
Found at i:19258590 original size:27 final size:26
Alignment explanation
Indices: 19258542--19258593 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
19258532 GTGAGGCTGC
*
19258542 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
19258568 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
19258594 TTACAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:19258798 original size:27 final size:27
Alignment explanation
Indices: 19258752--19258841 Score: 126
Period size: 27 Copynumber: 3.3 Consensus size: 27
19258742 TGCATAATGG
* * *
19258752 TAATTTTACCCCACAAGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAA
19258779 TAATTCTACCCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCAA
* * *
19258806 TAATTCTACCTTATAGGGGTATTTCGA
1 TAATTCTACCCTACAGGGGTATTTCAA
19258833 TAATTCTAC
1 TAATTCTAC
19258842 AACTTATCCA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCAA
Found at i:19261116 original size:19 final size:20
Alignment explanation
Indices: 19261092--19261129 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
19261082 TAGTCTTAAA
*
19261092 ATAAAATAA-AAGTAAAAAC
1 ATAAAATAATAAATAAAAAC
19261111 ATAAAATAATAAATAAAAA
1 ATAAAATAATAAATAAAAA
19261130 TATTTAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.18
Consensus pattern (20 bp):
ATAAAATAATAAATAAAAAC
Found at i:19263279 original size:55 final size:55
Alignment explanation
Indices: 19263132--19263266 Score: 191
Period size: 55 Copynumber: 2.5 Consensus size: 55
19263122 GAGTGCTTGA
* *
19263132 CACGGGCGTGTCGAACGCCCGTGTTAATTTGACAGGTTCAGGCACGGGTTCAAGG
1 CACGGGCGTGTCGCACGCCCGTGTTAATTTGACAGGTTCAGCCACGGGTTCAAGG
* * * * *
19263187 CACGGGCGTGTTGCACGCTCGTGTTAATGTGACAGGTTC-GACCACGGTTTCCAGG
1 CACGGGCGTGTCGCACGCCCGTGTTAATTTGACAGGTTCAG-CCACGGGTTCAAGG
19263242 CACGGGCGTGTCGCACGCCCGTGTT
1 CACGGGCGTGTCGCACGCCCGTGTT
19263267 GTTTTGGTAG
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
54 1 0.01
55 69 0.99
ACGTcount: A:0.16, C:0.27, G:0.34, T:0.23
Consensus pattern (55 bp):
CACGGGCGTGTCGCACGCCCGTGTTAATTTGACAGGTTCAGCCACGGGTTCAAGG
Found at i:19263288 original size:55 final size:54
Alignment explanation
Indices: 19263132--19263289 Score: 181
Period size: 55 Copynumber: 2.9 Consensus size: 54
19263122 GAGTGCTTGA
* *
19263132 CACGGGCGTGTCGAACGCCCGTGTTAATTTGACAGGTTCAGGCACGGGTTCAAGG
1 CACGGGCGTGTCGCACGCCCGTGTTAATTTGACAGGTT-AGACACGGGTTCAAGG
* * * * * *
19263187 CACGGGCGTGTTGCACGCTCGTGTTAATGTGACAGGTTCGACCACGGTTTCCAGG
1 CACGGGCGTGTCGCACGCCCGTGTTAATTTGACAGGTTAGA-CACGGGTTCAAGG
** **
19263242 CACGGGCGTGTCGCACGCCCGTGTTGTTTTGGTAGGTTAGCACACGGG
1 CACGGGCGTGTCGCACGCCCGTGTTAATTTGACAGGTTAG-ACACGGG
19263290 CATGTCGCAC
Statistics
Matches: 84, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
54 1 0.01
55 82 0.98
56 1 0.01
ACGTcount: A:0.16, C:0.25, G:0.35, T:0.24
Consensus pattern (54 bp):
CACGGGCGTGTCGCACGCCCGTGTTAATTTGACAGGTTAGACACGGGTTCAAGG
Found at i:19272481 original size:43 final size:43
Alignment explanation
Indices: 19272427--19272542 Score: 144
Period size: 43 Copynumber: 2.7 Consensus size: 43
19272417 GGTTACCGAG
* * **
19272427 ATGTGAGTACATGTAAGACCATGTCTGGGACATTGACAT-TGT
1 ATGTGATTACATGTAAGACCATGTCTGGGACAGTGACATCAAT
* *
19272469 ATTGTGATTACATTTAAGACCATGTCTGGGACAGTGGCATCAAT
1 A-TGTGATTACATGTAAGACCATGTCTGGGACAGTGACATCAAT
* *
19272513 ATGTGATAACATGTAAGACCATATCTGGGA
1 ATGTGATTACATGTAAGACCATGTCTGGGA
19272543 TATGGCATTG
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 1 0.02
43 60 0.95
44 2 0.03
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACAGTGACATCAAT
Found at i:19276769 original size:45 final size:45
Alignment explanation
Indices: 19276675--19276782 Score: 128
Period size: 45 Copynumber: 2.4 Consensus size: 45
19276665 TGTTTTTGTG
* * * *
19276675 TAAGACCACATCTAGGACGTTGGCATCGATATATATGTTTTCATG
1 TAAGACCACGTCTAGGACGTTGGCATCGATATATATGGTTACATA
* *
19276720 TAAGACCACGTCTAGGACTTTGGCATCGATATATGTGGTTACGA-A
1 TAAGACCACGTCTAGGACGTTGGCATCGATATATATGGTTAC-ATA
* *
19276765 TAAGACCATGTCTGGGAC
1 TAAGACCACGTCTAGGAC
19276783 ATCGACATCA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
45 53 0.98
46 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.30
Consensus pattern (45 bp):
TAAGACCACGTCTAGGACGTTGGCATCGATATATATGGTTACATA
Found at i:19280078 original size:13 final size:13
Alignment explanation
Indices: 19280060--19280084 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
19280050 TGATAAACAT
19280060 ATTTTACAAAGTG
1 ATTTTACAAAGTG
19280073 ATTTTACAAAGT
1 ATTTTACAAAGT
19280085 TGTAAAATGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.40
Consensus pattern (13 bp):
ATTTTACAAAGTG
Found at i:19285212 original size:27 final size:27
Alignment explanation
Indices: 19285180--19285243 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 27
19285170 AACCCAGTTT
* * *
19285180 GTAAAATGACTGTAGTACCCCTTTATG
1 GTAAAATGACCGTAATACCCCTGTATG
19285207 GTAAAATGACCGTAATACCCCTGTATG
1 GTAAAATGACCGTAATACCCCTGTATG
*
19285234 CTAAAATGAC
1 GTAAAATGAC
19285244 AATTACGTCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.28
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTGTATG
Found at i:19285284 original size:15 final size:16
Alignment explanation
Indices: 19285254--19285287 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
19285244 AATTACGTCC
*
19285254 TTATGTTCTGTATGAT
1 TTATGTGCTGTATGAT
19285270 TTATGTGCT-TATGAT
1 TTATGTGCTGTATGAT
19285285 TTA
1 TTA
19285288 CATATATGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.21, C:0.06, G:0.18, T:0.56
Consensus pattern (16 bp):
TTATGTGCTGTATGAT
Found at i:19285429 original size:27 final size:27
Alignment explanation
Indices: 19285399--19285465 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
19285389 GTGACTATGT
19285399 CACATTCACTGTTACTAGTGGCTTTGC
1 CACATTCACTGTTACTAGTGGCTTTGC
* * *
19285426 CACA-ACTACTGATACTCGTGGCTTTGC
1 CACATTC-ACTGTTACTAGTGGCTTTGC
*
19285453 CACATTTACTGTT
1 CACATTCACTGTT
19285466 TCTGGTAGCT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.03
27 31 0.97
ACGTcount: A:0.21, C:0.27, G:0.16, T:0.36
Consensus pattern (27 bp):
CACATTCACTGTTACTAGTGGCTTTGC
Found at i:19289060 original size:47 final size:47
Alignment explanation
Indices: 19288987--19289159 Score: 210
Period size: 47 Copynumber: 3.7 Consensus size: 47
19288977 GCCCATAAGC
*
19288987 GAACTCAGACTCAACTCAACGCGCTCGGATGCCTAGTTACATCTCAT
1 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAT
* *
19289034 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAT
* * * * *
19289081 GAACTCGGACTCAACTCAACGAGTTCGGACG-CTCG---CATCCATAAGT
1 GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACAT-C-TCA-T
*
19289127 GAACTCAGACTCAACTCAACGAGTTCGGATGCC
1 GAACTCAGACTCAACTCAACGAGCTCGGATGCC
19289160 CAAATATCCC
Statistics
Matches: 112, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
43 3 0.03
44 1 0.01
45 2 0.02
46 32 0.29
47 74 0.66
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.21
Consensus pattern (47 bp):
GAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCAT
Found at i:19294095 original size:26 final size:27
Alignment explanation
Indices: 19294066--19294119 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
19294056 TCACACAAGT
*
19294066 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
19294092 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
19294119 T
1 T
19294120 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:19294150 original size:27 final size:27
Alignment explanation
Indices: 19294120--19294292 Score: 247
Period size: 27 Copynumber: 6.4 Consensus size: 27
19294110 GGGGCAAAAT
* * * *
19294120 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
19294147 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
19294174 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
19294201 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
19294228 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
19294255 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
19294282 GGTAACTCTAC
1 GGTAATTCTAC
19294293 AACTTATCCA
Statistics
Matches: 129, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 129 1.00
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:19296906 original size:41 final size:41
Alignment explanation
Indices: 19296849--19296939 Score: 164
Period size: 41 Copynumber: 2.2 Consensus size: 41
19296839 GTACCAAATT
19296849 TTGAGCCTATTAACACTTCTTGATAAACCTCATTACAAAAC
1 TTGAGCCTATTAACACTTCTTGATAAACCTCATTACAAAAC
* *
19296890 TTGAGCCTATTAACACTTCTTGATGAACCTCATTACAAACC
1 TTGAGCCTATTAACACTTCTTGATAAACCTCATTACAAAAC
19296931 TTGAGCCTA
1 TTGAGCCTA
19296940 AAAAAGTTAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.33, C:0.25, G:0.10, T:0.32
Consensus pattern (41 bp):
TTGAGCCTATTAACACTTCTTGATAAACCTCATTACAAAAC
Found at i:19296933 original size:22 final size:22
Alignment explanation
Indices: 19296867--19296934 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
19296857 ATTAACACTT
* *
19296867 CTTGATAAACCTCATTACAAAA
1 CTTGATGAACCTCATTACAAAC
*
19296889 CTTGA-G--CCT-ATTA-ACAC
1 CTTGATGAACCTCATTACAAAC
19296906 TTCTTGATGAACCTCATTACAAAC
1 --CTTGATGAACCTCATTACAAAC
19296930 CTTGA
1 CTTGA
19296935 GCCTAAAAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 14
0.66 0.08 0.26
Matches are distributed among these distances:
17 2 0.06
18 4 0.11
19 8 0.23
20 1 0.03
22 13 0.37
23 4 0.11
24 3 0.09
ACGTcount: A:0.35, C:0.25, G:0.09, T:0.31
Consensus pattern (22 bp):
CTTGATGAACCTCATTACAAAC
Found at i:19307243 original size:55 final size:51
Alignment explanation
Indices: 19307176--19307333 Score: 185
Period size: 45 Copynumber: 3.2 Consensus size: 51
19307166 ATGATAGTAA
19307176 GGCCTAATGGCCGATAGTGATTGAAAATGTGAAAGTGTATATATATGTGATAAG
1 GGCCTAATGGCCGAT-GTGA-TG-AAATGTGAAAGTGTATATATATGTGATAAG
19307230 GCGCCTAATGGCCGATGTGATG-AATGTGAAAGTG--TATATATGTGATAA-
1 G-GCCTAATGGCCGATGTGATGAAATGTGAAAGTGTATATATATGTGATAAG
*
19307278 -GCCTAAT-GCCGATGTGATGAAGT-TGAAA-TAGTAT-TAT-TGTGAT-AG
1 GGCCTAATGGCCGATGTGATGAAATGTGAAAGT-GTATATATATGTGATAAG
19307323 GGCCTAATGGC
1 GGCCTAATGGC
19307334 TGGCGATGTC
Statistics
Matches: 95, Mismatches: 1, Indels: 23
0.80 0.01 0.19
Matches are distributed among these distances:
44 2 0.02
45 24 0.25
46 19 0.20
47 3 0.03
49 14 0.15
51 12 0.13
53 2 0.02
54 5 0.05
55 14 0.15
ACGTcount: A:0.32, C:0.10, G:0.28, T:0.30
Consensus pattern (51 bp):
GGCCTAATGGCCGATGTGATGAAATGTGAAAGTGTATATATATGTGATAAG
Found at i:19310458 original size:28 final size:28
Alignment explanation
Indices: 19310382--19310501 Score: 158
Period size: 28 Copynumber: 4.4 Consensus size: 28
19310372 ATATTAAGTC
*
19310382 CGCACACTCAGTG-TATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
19310408 CGCACACTTA--GCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
19310434 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
19310462 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
19310491 CGCACACTTAG
1 CGCACACTTAG
19310502 CGCCAATCTC
Statistics
Matches: 84, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
24 1 0.01
25 9 0.11
26 23 0.27
28 35 0.42
29 16 0.19
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:19318463 original size:28 final size:28
Alignment explanation
Indices: 19318400--19318522 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
19318390 ATATTAAGTC
*
19318400 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
19318427 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
19318455 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * * *
19318483 CGCACACTTAGTGTTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
19318512 CGCACACTTAG
1 CGCACACTTAG
19318523 CGCCAATCTC
Statistics
Matches: 88, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
27 22 0.25
28 50 0.57
29 16 0.18
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:19318470 original size:55 final size:57
Alignment explanation
Indices: 19318399--19318522 Score: 180
Period size: 55 Copynumber: 2.2 Consensus size: 57
19318389 TATATTAAGT
* *
19318399 CCGCACACTCAGTGCTATATAATC-AACTCGCACACTTAGTGCTATATAA-TCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAATTCAAAC
* * * *
19318454 TCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGTTGTACAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAATTCAAAC
19318511 CCGCACACTTAG
1 CCGCACACTTAG
19318523 CGCCAATCTC
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 22 0.37
56 22 0.37
57 16 0.27
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.27
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTATACAATTCAAAC
Found at i:19324664 original size:34 final size:34
Alignment explanation
Indices: 19324621--19324689 Score: 111
Period size: 34 Copynumber: 2.0 Consensus size: 34
19324611 AGTGAAGATT
* *
19324621 AACTCTTTTTCTAGTTAGGCAATTTTTCAATTCA
1 AACTCTTTTTCTAGTTAGGAAAATTTTCAATTCA
*
19324655 AACTCTTTTTCTATTTAGGAAAATTTTCAATTCA
1 AACTCTTTTTCTAGTTAGGAAAATTTTCAATTCA
19324689 A
1 A
19324690 CCTCGATTCT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.30, C:0.16, G:0.07, T:0.46
Consensus pattern (34 bp):
AACTCTTTTTCTAGTTAGGAAAATTTTCAATTCA
Found at i:19328357 original size:18 final size:18
Alignment explanation
Indices: 19328334--19328371 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
19328324 TGTTGCTGGA
*
19328334 GAAGGAACATGTTCGAGT
1 GAAGGAACATGCTCGAGT
19328352 GAAGGAACATGCTCGAGT
1 GAAGGAACATGCTCGAGT
19328370 GA
1 GA
19328372 TGAAATATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.34, C:0.13, G:0.34, T:0.18
Consensus pattern (18 bp):
GAAGGAACATGCTCGAGT
Found at i:19340063 original size:15 final size:15
Alignment explanation
Indices: 19340031--19340059 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
19340021 ATTTTCTGTG
19340031 TTTATAATGTGTGAA
1 TTTATAATGTGTGAA
19340046 TTTAT-ATGTGTGAA
1 TTTATAATGTGTGAA
19340060 ATTTTCATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (15 bp):
TTTATAATGTGTGAA
Found at i:19341272 original size:43 final size:43
Alignment explanation
Indices: 19341187--19341282 Score: 133
Period size: 43 Copynumber: 2.2 Consensus size: 43
19341177 CATAGGATTT
* *
19341187 TCGATATGTGTTCTCGTGTAAGACCACGTCTGTGACGTTGGCA
1 TCGATATGTGTTCTCGTGTAAGACCACGTCTGGGAAGTTGGCA
19341230 TCGATATGTGTTCTCGTGTAAGA-CACTGTCTGGGATAG-TGGCA
1 TCGATATGTGTTCTCGTGTAAGACCAC-GTCTGGGA-AGTTGGCA
*
19341273 TCTATATGTG
1 TCGATATGTG
19341283 ATTACATGTA
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
42 3 0.06
43 44 0.92
44 1 0.02
ACGTcount: A:0.20, C:0.18, G:0.28, T:0.34
Consensus pattern (43 bp):
TCGATATGTGTTCTCGTGTAAGACCACGTCTGGGAAGTTGGCA
Found at i:19341315 original size:43 final size:41
Alignment explanation
Indices: 19341187--19341316 Score: 111
Period size: 43 Copynumber: 3.0 Consensus size: 41
19341177 CATAGGATTT
* * *
19341187 TCGATATGTGTTCTCGTGTAAGACCACGTCTGTGACGTTGGCA
1 TCGATATGTGTTCACATGTAAGA-CATGTCTG-GACGTTGGCA
* * *
19341230 TCGATATGTGTTCTCGTGTAAGACACTGTCTGGGATAG-TGGCA
1 TCGATATGTGTTCACATGTAAGACA-TGTCT-GGA-CGTTGGCA
*
19341273 TCTATATGTGATT-ACATGTAAGACGATGTCTAGGACGTTGGCA
1 TCGATATGTG-TTCACATGTAAGAC-ATGTCT-GGACGTTGGCA
19341316 T
1 T
19341317 TGTACGATAT
Statistics
Matches: 74, Mismatches: 7, Indels: 12
0.80 0.08 0.13
Matches are distributed among these distances:
42 3 0.04
43 66 0.89
44 5 0.07
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (41 bp):
TCGATATGTGTTCACATGTAAGACATGTCTGGACGTTGGCA
Found at i:19344079 original size:29 final size:28
Alignment explanation
Indices: 19344043--19344115 Score: 96
Period size: 29 Copynumber: 2.5 Consensus size: 28
19344033 TCATGAGATT
19344043 GGCACTAAGTGTGCG-GCTTTAAATTGTACA
1 GGCACTAAGTGTGCGAG-TTTAAA--GTACA
19344073 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGAGTTTAAAGTACA
19344100 TGGCACTAAGTGTGCG
1 -GGCACTAAGTGTGCG
19344116 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
27 5 0.12
29 34 0.85
30 1 0.03
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (28 bp):
GGCACTAAGTGTGCGAGTTTAAAGTACA
Found at i:19344338 original size:174 final size:174
Alignment explanation
Indices: 19344073--19344400 Score: 611
Period size: 174 Copynumber: 1.9 Consensus size: 174
19344063 AAATTGTACA
*
19344073 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATGATTAAGCACTATG
* *
19344138 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
19344203 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* *
19344247 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATGATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATGATTAAGCACTATG
19344312 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
19344377 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
19344401 ACCTTGAGTT
Statistics
Matches: 149, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 149 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATGATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:19351347 original size:11 final size:11
Alignment explanation
Indices: 19351331--19351361 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
19351321 TAAATTACAT
19351331 AAATTATTTTA
1 AAATTATTTTA
19351342 AAATTATTTTA
1 AAATTATTTTA
19351353 AAATT-TTTT
1 AAATTATTTT
19351362 GAATGCTCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.20
11 16 0.80
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (11 bp):
AAATTATTTTA
Found at i:19352054 original size:57 final size:57
Alignment explanation
Indices: 19351931--19352130 Score: 222
Period size: 57 Copynumber: 3.5 Consensus size: 57
19351921 CCACATTTCT
* * * * * * *
19351931 AAAAGGATTTATCCCGGACGAGTAATCCTGATATAAG-TCCTCTTGAGCATATGTTATG
1 AAAAGGATTTAGCCCGGACGGGTAATCCAGAT-CAAGCTCCT-TAGAGCATATGTCATA
* ** * *
19351989 TATTGGATTTAGCCCAGACGGGTAATCCAGATCAAGCTCTTTAGAGCATATGTCATA
1 AAAAGGATTTAGCCCGGACGGGTAATCCAGATCAAGCTCCTTAGAGCATATGTCATA
* *
19352046 AAAAGGATTTAGCCCGGATGGGTAATCCAGATCAAGCTCCTTGGAGCATATGTCATA
1 AAAAGGATTTAGCCCGGACGGGTAATCCAGATCAAGCTCCTTAGAGCATATGTCATA
* * *
19352103 AAGAGGATTTAGCCTGGACTGGTAATCC
1 AAAAGGATTTAGCCCGGACGGGTAATCC
19352131 TGTTGCTTAT
Statistics
Matches: 118, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
57 90 0.76
58 28 0.24
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.28
Consensus pattern (57 bp):
AAAAGGATTTAGCCCGGACGGGTAATCCAGATCAAGCTCCTTAGAGCATATGTCATA
Found at i:19366023 original size:9 final size:9
Alignment explanation
Indices: 19366009--19366034 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
19365999 CTTCTCTCTT
19366009 TTTTTTTTC
1 TTTTTTTTC
19366018 TTTTTTTTC
1 TTTTTTTTC
19366027 TTTTTTTT
1 TTTTTTTT
19366035 AAGCATGAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTTC
Found at i:19372712 original size:48 final size:46
Alignment explanation
Indices: 19372604--19373009 Score: 283
Period size: 48 Copynumber: 8.6 Consensus size: 46
19372594 TGATATGTGT
* * *
19372604 GCTAGTGTAAGACATGTATGGGAAATGCATCAACCAT--AGCATG-AGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACC-TCGAG-ATGTA-A
*
19372650 GCCAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGTTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATG--TAA
19372698 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGTTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATG--TAA
* * * * *
19372746 GCTAGTGTAAGGCATGTTTGGGACATGCATCGGCATTGAGATG-AGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGTA-A
* * * * *
19372792 GCTAGTGTAAGACATATCTGGGACATGCATAGGCCTCGCGATATACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGT--AA
* * * * * * *
19372840 GCTAGTGTAAGGCCTGTCTGGGACATGGCGTC-AGCTTGTGGTGT--
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGACCTCGAGATGTAA
* * *
19372884 G-TCAGTGTAAGACTTGTCTGGGACATGGCATCAACACT-GATA-GATAA
1 GCT-AGTGTAAGACATGTCTGGGACAT-GCATCGAC-CTCGAGATG-TAA
* * * * * *
19372931 GAGTCAGTGTAAGACCTGTCTAGAACATGGCATCGACCTCGCTATATGAAA
1 G-CT-AGTGTAAGACATGTCTGGGACAT-GCATCGACCTCG--AGATGTAA
19372982 GCTAGTGTAAGACTATGTCTGGGACATG
1 GCTAGTGTAAGAC-ATGTCTGGGACATG
19373010 GCGTCGGCAT
Statistics
Matches: 292, Mismatches: 45, Indels: 43
0.77 0.12 0.11
Matches are distributed among these distances:
43 1 0.00
44 28 0.10
45 5 0.02
46 72 0.25
47 3 0.01
48 118 0.40
49 47 0.16
50 11 0.04
51 6 0.02
52 1 0.00
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGTAA
Found at i:19372795 original size:94 final size:92
Alignment explanation
Indices: 19372604--19372866 Score: 273
Period size: 94 Copynumber: 2.8 Consensus size: 92
19372594 TGATATGTGT
* * * * *
19372604 GCTAGTGTAAGACATGTATGGGAAATGCATCAACCAT--AGCATG-AGAGCCAGTGTAAGACATG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACC-TCGAG-ATGTA-AGCTAGTGTAAGGCATG
*
19372666 TCTGGGACATGCATCGACCTCGAGATGTTTAA
63 TCTGGGACATGCATCGACATCGAGATG--TAA
19372698 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGTTTAAGCTAGTGTAAGGCATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATG--TAAGCTAGTGTAAGGCATGT
* * *
19372763 TTGGGACATGCATCGGCATTGAGATG-AGA
64 CTGGGACATGCATCGACATCGAGATGTA-A
* * * * * *
19372792 GCTAGTGTAAGACATATCTGGGACATGCATAGGCCTCGCGATATACAAGCTAGTGTAAGGCCTGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGT--AAGCTAGTGTAAGGCATGT
19372857 CTGGGACATG
64 CTGGGACATG
19372867 GCGTCAGCTT
Statistics
Matches: 145, Mismatches: 16, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
92 1 0.01
93 2 0.01
94 101 0.70
95 2 0.01
96 38 0.26
97 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.25
Consensus pattern (92 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGATGTAAGCTAGTGTAAGGCATGTCT
GGGACATGCATCGACATCGAGATGTAA
Found at i:19372860 original size:142 final size:142
Alignment explanation
Indices: 19372604--19373009 Score: 362
Period size: 142 Copynumber: 2.9 Consensus size: 142
19372594 TGATATGTGT
*
19372604 GCTAGTGTAAGACATGTATGGGAAATGCATCAACCATAGCATGAGAGCCAGTGTAAGACATGTCT
1 GCTAGTGTAAGACATGTATGGGAAATGCATCAACCATAGCATGAGAGCCAGTGTAAGACATATCT
* * **
19372669 GGGACATGCATCGACCTCGAGATGTTTAAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCT
66 GGGACATGCATAGACCTCGAGATATACAAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCT
19372734 CGAGATGTTTAA
131 CGAGATGTTTAA
* * * ** *
19372746 GCTAGTGTAAGGCATGTTTGGGACATGCATC-GGCATTGAG-ATGAGAGCTAGTGTAAGACATAT
1 GCTAGTGTAAGACATGTATGGGAAATGCATCAACCA-T-AGCATGAGAGCCAGTGTAAGACATAT
* * * * *
19372809 CTGGGACATGCATAGGCCTCGCGATATACAAGCTAGTGTAAGGCCTGTCTGGGACATGGCGTC-A
64 CTGGGACATGCATAGACCTCGAGATATACAAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGA
* * * * *
19372873 GCTTGTGGTGTGT--
128 CCTCGAGATGTTTAA
* * * * * *
19372886 -C-AGTGTAAGACTTGTCTGGGACATGGCATCAACACTGATAG-ATAAGAGTCAGTGTAAGACCT
1 GCTAGTGTAAGACATGTATGGGAAAT-GCATCAAC-C--ATAGCATGAGAGCCAGTGTAAGACAT
* * * * **
19372948 GTCTAGAACATGGCATCGACCTCGCTATATGA-AAGCTAGTGTAAGACTATGTCTGGGACATG
62 ATCTGGGACAT-GCATAGACCTCGAGATAT-ACAAGCTAGTGTAAGAC-ATGTCTGGGACATG
19373010 GCGTCGGCAT
Statistics
Matches: 215, Mismatches: 38, Indels: 22
0.78 0.14 0.08
Matches are distributed among these distances:
138 20 0.09
139 6 0.03
141 30 0.14
142 139 0.65
143 20 0.09
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (142 bp):
GCTAGTGTAAGACATGTATGGGAAATGCATCAACCATAGCATGAGAGCCAGTGTAAGACATATCT
GGGACATGCATAGACCTCGAGATATACAAGCTAGTGTAAGACATGTCTGGGACATGCATCGACCT
CGAGATGTTTAA
Found at i:19374251 original size:20 final size:21
Alignment explanation
Indices: 19374212--19374251 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
19374202 GTTATGATGA
*
19374212 CCACACGGACGTGTTGCCCTT
1 CCACACGGACATGTTGCCCTT
*
19374233 CCACACGGGCATG-TGCCCT
1 CCACACGGACATGTTGCCCT
19374252 GTTTCAAGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (21 bp):
CCACACGGACATGTTGCCCTT
Found at i:19376275 original size:17 final size:17
Alignment explanation
Indices: 19376255--19376292 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
19376245 ATTTTGTTCT
19376255 TTTTAATTATTAAAATA
1 TTTTAATTATTAAAATA
* *
19376272 TTTTAATTATTTAATTA
1 TTTTAATTATTAAAATA
19376289 TTTT
1 TTTT
19376293 TTCCTATCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTTAATTATTAAAATA
Found at i:19377231 original size:15 final size:16
Alignment explanation
Indices: 19377201--19377233 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
19377191 CCATGTCTTC
19377201 CACACGGGTAGAGACA
1 CACACGGGTAGAGACA
*
19377217 CACAC-GGTTGAGACA
1 CACACGGGTAGAGACA
19377232 CA
1 CA
19377234 TGGCCGTGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.36, C:0.27, G:0.27, T:0.09
Consensus pattern (16 bp):
CACACGGGTAGAGACA
Found at i:19379628 original size:182 final size:182
Alignment explanation
Indices: 19379321--19379687 Score: 648
Period size: 182 Copynumber: 2.0 Consensus size: 182
19379311 TTGGACACAT
19379321 ATAATTAGGGCATAAATAATTTGTAATTAAGTTCTGACTCTTCGTCTATTAATTACAAAATTATT
1 ATAATTAGGGCATAAATAATTTGTAATTAAGTTCTGACTCTTCGTCTATTAATTACAAAATTATT
* * *
19379386 TAATCATGGAGTCATTTCACTAATGTATAATGATTGAACTCTCTCTTATTATATATCATTATAAA
66 TAATCATGGAGTCATTTCACTAAAGTACAATGATTGAACTCTCTCATATTATATATCATTATAAA
19379451 AGCAACTTTTTAGATGTTTGCCCAATGACCTTGTCATAAGTGTGTTACCCTC
131 AGCAACTTTTTAGATGTTTGCCCAATGACCTTGTCATAAGTGTGTTACCCTC
* *
19379503 ATAATTAGGGC-TCAAATAATTTGTAATTAAGTTTTGACTCTTCGTCTATTAATTACAATATTAT
1 ATAATTAGGGCAT-AAATAATTTGTAATTAAGTTCTGACTCTTCGTCTATTAATTACAAAATTAT
19379567 TTAATCATGGAGTCATTTCACTAAAGTACAATGATTGAACTCTCAT-ATATTATATATCATTATA
65 TTAATCATGGAGTCATTTCACTAAAGTACAATGATTGAACTCTC-TCATATTATATATCATTATA
*
19379631 AAAGCAACTTTTTAGATGTTTGCCCAGTGACCTTGTCATAAGTGTGTTACCCTC
129 AAAGCAACTTTTTAGATGTTTGCCCAATGACCTTGTCATAAGTGTGTTACCCTC
19379685 ATA
1 ATA
19379688 TGATATCTTT
Statistics
Matches: 177, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
181 1 0.01
182 175 0.99
183 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (182 bp):
ATAATTAGGGCATAAATAATTTGTAATTAAGTTCTGACTCTTCGTCTATTAATTACAAAATTATT
TAATCATGGAGTCATTTCACTAAAGTACAATGATTGAACTCTCTCATATTATATATCATTATAAA
AGCAACTTTTTAGATGTTTGCCCAATGACCTTGTCATAAGTGTGTTACCCTC
Found at i:19380871 original size:58 final size:58
Alignment explanation
Indices: 19380770--19380879 Score: 150
Period size: 58 Copynumber: 1.9 Consensus size: 58
19380760 ACCTTTGCAG
* *
19380770 ATTTAATAAAAATAAAAAATAATTTAACCATATTTTAACATAATTATTATTAAATATA
1 ATTTAATAAAAATAAAAAATAATTTAACAAAATTTTAACATAATTATTATTAAATATA
* * * *
19380828 ATTTAAT-AAAATAATATATAATTTAATAAAATTCTTAATATAATTATTATTA
1 ATTTAATAAAAATAAAAAATAATTTAACAAAATT-TTAACATAATTATTATTA
19380880 TATGAATTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
57 21 0.47
58 24 0.53
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.43
Consensus pattern (58 bp):
ATTTAATAAAAATAAAAAATAATTTAACAAAATTTTAACATAATTATTATTAAATATA
Found at i:19380915 original size:58 final size:57
Alignment explanation
Indices: 19380804--19380916 Score: 133
Period size: 58 Copynumber: 1.9 Consensus size: 57
19380794 TAACCATATT
* *
19380804 TTAACATAATTATTATTAAATATAATTTAATAAAATAATATATAATTTAATAAAATTC
1 TTAACATAATTATTATT-AATATAATTTAAAAAAATAATATATAATCTAATAAAATTC
*
19380862 TTAATATAATTATTATT-ATATGAA-TTAAAAAATCATAATATATAATACT-ATAAAA
1 TTAACATAATTATTATTAATAT-AATTTAAAAAA--ATAATATATAAT-CTAATAAAA
19380917 ATAATATATA
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
56 11 0.23
57 2 0.04
58 34 0.71
59 1 0.02
ACGTcount: A:0.54, C:0.04, G:0.01, T:0.42
Consensus pattern (57 bp):
TTAACATAATTATTATTAATATAATTTAAAAAAATAATATATAATCTAATAAAATTC
Found at i:19391340 original size:26 final size:26
Alignment explanation
Indices: 19391310--19391359 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
19391300 AAATGATAGA
* *
19391310 ATTAATTA-TATAAATATTTTAAAATT
1 ATTAAATATTATAAA-ATTTAAAAATT
19391336 ATTAAATATTATAAAATTTAAAAA
1 ATTAAATATTATAAAATTTAAAAA
19391360 CAAGACTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 15 0.71
27 6 0.29
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (26 bp):
ATTAAATATTATAAAATTTAAAAATT
Found at i:19391343 original size:18 final size:19
Alignment explanation
Indices: 19391313--19391353 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
19391303 TGATAGAATT
*
19391313 AATTATATAAATATTTTAA
1 AATTATATAAATATTATAA
19391332 AATTAT-TAAATATTATAA
1 AATTATATAAATATTATAA
19391350 AATT
1 AATT
19391354 TAAAAACAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
AATTATATAAATATTATAA
Found at i:19398837 original size:19 final size:20
Alignment explanation
Indices: 19398813--19398850 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
19398803 GGTACCACCA
19398813 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
19398832 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
19398851 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:19399146 original size:46 final size:45
Alignment explanation
Indices: 19399079--19399246 Score: 180
Period size: 46 Copynumber: 3.7 Consensus size: 45
19399069 CGCCCCTAAG
* *
19399079 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACGTT-GCATCCATAAA
* * *
19399125 TGAACTCGGACTCAACTCAACGAGTTCGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCG--GAC--GTTGCATCCATAAA
* * *
19399171 CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGAC-GTTGCATCCATAAA
*
19399217 TGAACTCGGACTCAACTCAACGAATTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
19399247 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
43 6 0.06
44 3 0.03
45 1 0.01
46 83 0.81
47 1 0.01
48 3 0.03
49 3 0.03
50 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACGTTGCATCCATAAA
Found at i:19399237 original size:92 final size:93
Alignment explanation
Indices: 19399080--19399249 Score: 279
Period size: 92 Copynumber: 1.8 Consensus size: 93
19399070 GCCCCTAAGT
* *
19399080 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
*
19399145 CGAGTTC-GATGCCTAGTTACATCTCAC
66 CGAATTCGGATGCCTAGTTACATCTCAC
* * *
19399172 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
19399237 CGAATTCGGATGC
66 CGAATTCGGATGC
19399250 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 66 0.93
93 5 0.07
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAATTCGGATGCCTAGTTACATCTCAC
Found at i:19406418 original size:19 final size:20
Alignment explanation
Indices: 19406394--19406431 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
19406384 GGTACCACCA
19406394 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
19406413 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
19406432 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:19408265 original size:48 final size:50
Alignment explanation
Indices: 19408197--19408338 Score: 157
Period size: 48 Copynumber: 2.9 Consensus size: 50
19408187 CAGTGTTCTC
* * * *
19408197 ATATCGATACCAATGGCATGTCCTAGACATGGTCTTATATGGGATCACAT
1 ATATCAATGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATCACAT
* * *
19408247 A-AT-GATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGA--ACAT
1 ATATCAATGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATCACAT
* * * *
19408293 ATATCAATGCCGATGCCATATCCCAGATATGGTCTTATACGGGATC
1 ATATCAATGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATC
19408339 TCATCAACCC
Statistics
Matches: 76, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
46 5 0.07
47 2 0.03
48 66 0.87
49 2 0.03
50 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (50 bp):
ATATCAATGCCAATGCCATGTCCCAGACATGGTCTTATATGGGATCACAT
Found at i:19427396 original size:68 final size:64
Alignment explanation
Indices: 19427331--19427538 Score: 215
Period size: 67 Copynumber: 3.2 Consensus size: 64
19427321 CATCATGTGT
* *
19427331 ACAAGAGCGCTACGAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTACGAG--A-TAT-ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATG
19427396 TAG
62 TAG
* * * * *
19427399 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGT
19427464 AG
63 AG
* * * *
19427466 ACAAGAGAGCTACGAGATAAACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-G
1 ACAAGAGAGCTACGAGATATA-TGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG
19427528 TACAAGAGAGC
1 -ACAAGAGAGC
19427539 CAAAATTATG
Statistics
Matches: 119, Mismatches: 16, Indels: 15
0.79 0.11 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.16
64 26 0.22
65 3 0.03
66 23 0.19
67 31 0.26
68 16 0.13
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG
Found at i:19429672 original size:19 final size:19
Alignment explanation
Indices: 19429629--19429665 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
19429619 AGGGACATAG
* *
19429629 GCGTGTCTCAAGCATACGA
1 GCGTGTCCCAAGCACACGA
19429648 GCGTGTCCCAAGCACACG
1 GCGTGTCCCAAGCACACG
19429666 GGGGTGTGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.24, C:0.32, G:0.27, T:0.16
Consensus pattern (19 bp):
GCGTGTCCCAAGCACACGA
Found at i:19435765 original size:20 final size:20
Alignment explanation
Indices: 19435737--19435776 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
19435727 ATATTAAAAT
19435737 CAAGATAAAATGT-TTTTAAC
1 CAAGATAAAA-GTCTTTTAAC
*
19435757 CAAGTTAAAAGTCTTTTAAC
1 CAAGATAAAAGTCTTTTAAC
19435777 TAATCAAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 2 0.11
20 16 0.89
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.35
Consensus pattern (20 bp):
CAAGATAAAAGTCTTTTAAC
Found at i:19444831 original size:42 final size:43
Alignment explanation
Indices: 19444779--19444885 Score: 119
Period size: 42 Copynumber: 2.5 Consensus size: 43
19444769 ATCTGAGATG
* **
19444779 TCGTTTAAGACCATGTCTGGGACATTGGCATCG-TATCTG-ATT
1 TCGTGTAAGACCATGTCTGGGACAGAGGCATCGATAT-TGAATT
* * *
19444821 TCGTGTAAGACCCTGTCTGGGATAGAGGCATTGATATTGAATT
1 TCGTGTAAGACCATGTCTGGGACAGAGGCATCGATATTGAATT
* *
19444864 ACATGTAAGACCATGTCTGGGA
1 TCGTGTAAGACCATGTCTGGGA
19444886 TGCCGACATT
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
42 29 0.54
43 25 0.46
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
TCGTGTAAGACCATGTCTGGGACAGAGGCATCGATATTGAATT
Found at i:19444881 original size:43 final size:42
Alignment explanation
Indices: 19444784--19444886 Score: 118
Period size: 43 Copynumber: 2.4 Consensus size: 42
19444774 AGATGTCGTT
* ** * *
19444784 TAAGACCATGTCTGGGACATTGGCATCGTATCTGATTTCGTG
1 TAAGACCATGTCTGGGATAGAGGCATCGTATCTGATTACATG
* *
19444826 TAAGACCCTGTCTGGGATAGAGGCATTGATAT-TGAATTACATG
1 TAAGACCATGTCTGGGATAGAGGCATCG-TATCTG-ATTACATG
19444869 TAAGACCATGTCTGGGAT
1 TAAGACCATGTCTGGGAT
19444887 GCCGACATTG
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
42 25 0.49
43 26 0.51
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (42 bp):
TAAGACCATGTCTGGGATAGAGGCATCGTATCTGATTACATG
Found at i:19452318 original size:7 final size:8
Alignment explanation
Indices: 19452293--19452317 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
19452283 CTAACTTTAA
19452293 TTACCTTT
1 TTACCTTT
19452301 TTACCTTT
1 TTACCTTT
19452309 TTACCTTT
1 TTACCTTT
19452317 T
1 T
19452318 AAAAATATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.24, G:0.00, T:0.64
Consensus pattern (8 bp):
TTACCTTT
Found at i:19455211 original size:48 final size:48
Alignment explanation
Indices: 19455153--19455340 Score: 263
Period size: 48 Copynumber: 3.9 Consensus size: 48
19455143 TCATACTGAA
**
19455153 GCCATATCCCAGATATGGTCTTACATGTA-ATCTCATATCGATGCCGAT
1 GCCATATCCCAGATATGGTCTTACA-CAAGATCTCATATCGATGCCGAT
* * **
19455201 GTCATATCCCAAATATGGTCTTACACAAGATCTCATATCGATGTTGAT
1 GCCATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCCGAT
* **
19455249 GCCATATCCAAGATATGGTCTTACACAAGATCTCATAT-GATGGTGAT
1 GCCATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCCGAT
*
19455296 GCCATATCCCAGATATGGTCTTACACAGGATCTCATATCGATGCC
1 GCCATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCC
19455341 ATGTCCCAGA
Statistics
Matches: 124, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
47 45 0.36
48 79 0.64
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.30
Consensus pattern (48 bp):
GCCATATCCCAGATATGGTCTTACACAAGATCTCATATCGATGCCGAT
Found at i:19455332 original size:95 final size:96
Alignment explanation
Indices: 19455153--19455338 Score: 277
Period size: 95 Copynumber: 1.9 Consensus size: 96
19455143 TCATACTGAA
* ** *
19455153 GCCATATCCCAGATATGGTCTTACATGTAATCTCATATCGATGCCGATGTCATATCCCAAATATG
1 GCCATATCCAAGATATGGTCTTACATCAAATCTCATATCGATGCCGATGCCATATCCCAAATATG
19455218 GTCTTACACAAGATCTCATATCGATGTTGAT
66 GTCTTACACAAGATCTCATATCGATGTTGAT
** *
19455249 GCCATATCCAAGATATGGTCTTACA-CAAGATCTCATAT-GATGGTGATGCCATATCCCAGATAT
1 GCCATATCCAAGATATGGTCTTACATCAA-ATCTCATATCGATGCCGATGCCATATCCCAAATAT
*
19455312 GGTCTTACACAGGATCTCATATCGATG
65 GGTCTTACACAAGATCTCATATCGATG
19455339 CCATGTCCCA
Statistics
Matches: 81, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
95 48 0.59
96 33 0.41
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.31
Consensus pattern (96 bp):
GCCATATCCAAGATATGGTCTTACATCAAATCTCATATCGATGCCGATGCCATATCCCAAATATG
GTCTTACACAAGATCTCATATCGATGTTGAT
Found at i:19455356 original size:42 final size:42
Alignment explanation
Indices: 19455024--19455363 Score: 190
Period size: 42 Copynumber: 7.7 Consensus size: 42
19455014 TCGTTTACTT
* * *
19455024 GATGCCATAGT-CCA-ACTATGGTCTTACACA-AAGTCTGACATC
1 GATGCCATA-TCCCAGAC-ATGGTCTTACACAGGA-TCTCATATC
* ** * **
19455066 GATGCCATGTCCCAGACATGGTCTTGTAC-GAAATCAGATATC
1 GATGCCATATCCCAGACATGGTCTTACACAG-GATCTCATATC
* * *
19455108 GATGCCGTATCCCAGACACGGTCTTATAC-GGAATCTCATA-C
1 GATGCCATATCCCAGACATGGTCTTACACAGG-ATCTCATATC
* * * *
19455149 TGAAGCCATATCCCAGATATGGTCTTACA-TGTAATCTCATATC
1 -GATGCCATATCCCAGACATGGTCTTACACAG-GATCTCATATC
* * *
19455192 GATGCCGATGTCATATCCCAAATATGGTCTTACACAAGATCTCATATC
1 GATG-C-----CATATCCCAGACATGGTCTTACACAGGATCTCATATC
* * * *
19455240 GATGTTGATGCCATATCCAAGATATGGTCTTACACAAGATCTCATATGATGGT
1 ------GATGCCATATCCCAGACATGGTCTTACACAGGATCTC--AT-AT--C
*
19455293 GATGCCATATCCCAGATATGGTCTTACACAGGATCTCATATC
1 GATGCCATATCCCAGACATGGTCTTACACAGGATCTCATATC
*
19455335 GATGCCATGTCCCAGACATGGTCTTACAC
1 GATGCCATATCCCAGACATGGTCTTACAC
19455364 GTATCACAAT
Statistics
Matches: 240, Mismatches: 31, Indels: 54
0.74 0.10 0.17
Matches are distributed among these distances:
41 2 0.01
42 122 0.51
43 6 0.03
44 2 0.01
45 2 0.01
47 35 0.15
48 62 0.26
50 2 0.01
51 2 0.01
53 1 0.00
54 4 0.02
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (42 bp):
GATGCCATATCCCAGACATGGTCTTACACAGGATCTCATATC
Found at i:19455425 original size:37 final size:36
Alignment explanation
Indices: 19455293--19455476 Score: 165
Period size: 37 Copynumber: 4.9 Consensus size: 36
19455283 ATATGATGGT
* * *
19455293 GATGCCATATCCCAGATATGGTCTTACACAGGATCTCATATC
1 GATGCCATAGCCCAGCTATGGTCTTACAC--G-TATC--A-C
19455335 GATGCCAT-GTCCCAGAC-ATGGTCTTACACGTATCAC
1 GATGCCATAG-CCCAG-CTATGGTCTTACACGTATCAC
* * ** * *
19455371 AATGCCATAACATAGCTATGGTCTTACATGTCATCAT
1 GATGCCATAGCCCAGCTATGGTCTTACACGT-ATCAC
* *
19455408 GATGCCATAGCCCAGCTATGGTCTTATACGTTATTAC
1 GATGCCATAGCCCAGCTATGGTCTTACACG-TATCAC
19455445 GATGCCATAGCCCAGCTATGGTCTTACACGTA
1 GATGCCATAGCCCAGCTATGGTCTTACACGTA
19455477 CCACATGTAT
Statistics
Matches: 118, Mismatches: 18, Indels: 18
0.77 0.12 0.12
Matches are distributed among these distances:
35 1 0.01
36 26 0.22
37 61 0.52
38 1 0.01
39 3 0.03
40 1 0.01
42 25 0.21
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (36 bp):
GATGCCATAGCCCAGCTATGGTCTTACACGTATCAC
Found at i:19484301 original size:42 final size:42
Alignment explanation
Indices: 19484240--19484319 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 42
19484230 TGACATTAGG
* *
19484240 GTTATGAGTTTACGTGTAAGACCATATCTGGGATATGGAATC
1 GTTATGAGTTTACGAGTAAGACCATATCTGGGACATGGAATC
*
19484282 GTTATGAGGTTT-CGAGTAAGACCATCTCTGGGACATGG
1 GTTATGA-GTTTACGAGTAAGACCATATCTGGGACATGG
19484320 CATTGATATG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
42 30 0.88
43 4 0.12
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (42 bp):
GTTATGAGTTTACGAGTAAGACCATATCTGGGACATGGAATC
Found at i:19484330 original size:42 final size:43
Alignment explanation
Indices: 19484242--19484331 Score: 112
Period size: 42 Copynumber: 2.1 Consensus size: 43
19484232 ACATTAGGGT
* * *
19484242 TATGA-GTTTACGTGTAAGACCATATCTGGGATATGGAATCGT
1 TATGAGGTTTACGAGTAAGACCATATCTGGGACATGGAATCGA
* * *
19484284 TATGAGGTTT-CGAGTAAGACCATCTCTGGGACATGGCATTGA
1 TATGAGGTTTACGAGTAAGACCATATCTGGGACATGGAATCGA
19484326 TATGAG
1 TATGAG
19484332 AATCATGTAA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 37 0.90
43 4 0.10
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (43 bp):
TATGAGGTTTACGAGTAAGACCATATCTGGGACATGGAATCGA
Found at i:19484363 original size:42 final size:41
Alignment explanation
Indices: 19484309--19484414 Score: 124
Period size: 42 Copynumber: 2.5 Consensus size: 41
19484299 AAGACCATCT
*
19484309 CTGGGACATGGCATTGATATGAGAAT-CATGTAAGACGATAG
1 CTGGGATATGGCATTGATATGAG-ATCCATGTAAGACGATAG
* * * *
19484350 CTGGGCTATTGGCATCGATATGAGATCCCATGTAAGACTATAT
1 CTGGGATA-TGGCATTGATATGAGAT-CCATGTAAGACGATAG
*
19484393 CTGGGATATGGCATTGGTATGA
1 CTGGGATATGGCATTGATATGA
19484415 TTCTATGTGT
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
41 8 0.15
42 26 0.48
43 20 0.37
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.28
Consensus pattern (41 bp):
CTGGGATATGGCATTGATATGAGATCCATGTAAGACGATAG
Found at i:19484397 original size:43 final size:41
Alignment explanation
Indices: 19484254--19484406 Score: 121
Period size: 42 Copynumber: 3.7 Consensus size: 41
19484244 TGAGTTTACG
* * * * **
19484254 TGTAAGACCATATCTGGGATATGGAATCGTTATGAGGTTTCGA
1 TGTAAGACGATAGCTGGGATATGGCATCGATATGA-GAATC-A
* ** * *
19484297 -GTAAGACCATCTCTGGGACATGGCATTGATATGAGAATCA
1 TGTAAGACGATAGCTGGGATATGGCATCGATATGAGAATCA
*
19484337 TGTAAGACGATAGCTGGGCTATTGGCATCGATATGAG-ATCCCA
1 TGTAAGACGATAGCTGGGATA-TGGCATCGATATGAGAAT--CA
* *
19484380 TGTAAGACTATATCTGGGATATGGCAT
1 TGTAAGACGATAGCTGGGATATGGCAT
19484407 TGGTATGATT
Statistics
Matches: 90, Mismatches: 16, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
40 1 0.01
41 20 0.22
42 49 0.54
43 20 0.22
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (41 bp):
TGTAAGACGATAGCTGGGATATGGCATCGATATGAGAATCA
Found at i:19502170 original size:47 final size:47
Alignment explanation
Indices: 19502118--19502525 Score: 600
Period size: 47 Copynumber: 8.6 Consensus size: 47
19502108 GATAATTGTG
* * * * *
19502118 ATGTGAATGTATATATATGTGATAAGGTCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
19502165 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
19502214 ATGTGAAAGTGTATATATGTGATAAGACCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
19502261 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
19502310 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
19502359 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
19502406 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
19502453 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
19502500 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
19502526 TCCCGAAGGG
Statistics
Matches: 332, Mismatches: 25, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
47 195 0.59
49 137 0.41
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:19502218 original size:96 final size:94
Alignment explanation
Indices: 19502118--19502525 Score: 600
Period size: 96 Copynumber: 4.3 Consensus size: 94
19502108 GATAATTGTG
* * *
19502118 ATGTGAATGTATATATATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATAT
19502183 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
*
19502214 ATGTGAAAGTGTATATATGTGATAAGACCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATAT
19502279 ATGTGATAAGGCCTAATGGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
19502310 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAT
*
19502375 ATGTGATAAGGCCTAATAGCCGATGTGATGA
64 ATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
19502406 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
* * * * * * *
19502471 GTGACAGGGCCGAGTGGCCAACGTGATGG
66 GTGATAAGGCCTAATGGCCGATGTGATGA
*
19502500 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
19502526 TCCCGAAGGG
Statistics
Matches: 291, Mismatches: 19, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
94 98 0.34
96 149 0.51
98 44 0.15
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:19506087 original size:27 final size:27
Alignment explanation
Indices: 19506057--19506217 Score: 171
Period size: 27 Copynumber: 6.0 Consensus size: 27
19506047 CCCTAATTGA
* * *
19506057 TAAAATGATTGTTTTGCCCTTATCTAG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* *
19506084 TAAAATGACTGTTTTACCTTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
*
19506111 TAAAATAACTGTTTTG-CCTTATGTGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* * * * *
19506137 TAGAATGACTATTTTGCCCTATTTATGA
1 TAAAATGACTGTTTTGCCCT-TATGTGG
* *
19506165 TAAAATGACTATTTTGCCCTTATATGG
1 TAAAATGACTGTTTTGCCCTTATGTGG
* *
19506192 TAAGATGACTGTTTTGCCCCTATGTG
1 TAAAATGACTGTTTTGCCCTTATGTG
19506218 ACATATATAT
Statistics
Matches: 111, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 22 0.20
27 66 0.59
28 23 0.21
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.42
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGTGG
Found at i:19508637 original size:27 final size:27
Alignment explanation
Indices: 19508598--19508774 Score: 174
Period size: 27 Copynumber: 6.5 Consensus size: 27
19508588 CCCTAATTGA
* * *
19508598 TAAAATGATTATTTTTCCATTATGTGG
1 TAAAATGACTATTTTCCCCTTATGTGG
*
19508625 TAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTATTTTCCCCTTATGTGG
* * * *
19508652 TAAAATGATTGTATTCCCCTTATATGG
1 TAAAATGACTATTTTCCCCTTATGTGG
* *
19508679 TAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTATTTTCCCCTTATGTGG
* * * * * *
19508706 TAGAATGACTCTTTTACCCTATTTATGA
1 TAAAATGACTATTTTCCCCT-TATGTGG
* *
19508734 TAAAATGACTATTTTACCCTTATCTGG
1 TAAAATGACTATTTTCCCCTTATGTGG
*
19508761 TAAGATGACTATTT
1 TAAAATGACTATTT
19508775 ATGTATGATC
Statistics
Matches: 125, Mismatches: 24, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
27 103 0.82
28 22 0.18
ACGTcount: A:0.28, C:0.14, G:0.15, T:0.42
Consensus pattern (27 bp):
TAAAATGACTATTTTCCCCTTATGTGG
Found at i:19508657 original size:54 final size:54
Alignment explanation
Indices: 19508598--19508774 Score: 203
Period size: 54 Copynumber: 3.3 Consensus size: 54
19508588 CCCTAATTGA
* * *
19508598 TAAAATGATTATTTTTCCATTATGTGGTAAAATGACTATTTTGCCCTTATGTGG
1 TAAAATGACTATTTTCCCATTATATGGTAAAATGACTATTTTGCCCTTATGTGG
* * * * *
19508652 TAAAATGATTGTATTCCCCTTATATGGTAAAATGACTGTTTTGCCCTTATGTGG
1 TAAAATGACTATTTTCCCATTATATGGTAAAATGACTATTTTGCCCTTATGTGG
* * * * *
19508706 TAGAATGACTCTTTTACCCTATT-TATGATAAAATGACTATTTTACCCTTATCTGG
1 TAAAATGACTATTTT-CCC-ATTATATGGTAAAATGACTATTTTGCCCTTATGTGG
*
19508761 TAAGATGACTATTT
1 TAAAATGACTATTT
19508775 ATGTATGATC
Statistics
Matches: 103, Mismatches: 18, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
54 59 0.57
55 42 0.41
56 2 0.02
ACGTcount: A:0.28, C:0.14, G:0.15, T:0.42
Consensus pattern (54 bp):
TAAAATGACTATTTTCCCATTATATGGTAAAATGACTATTTTGCCCTTATGTGG
Found at i:19517508 original size:34 final size:33
Alignment explanation
Indices: 19517432--19517496 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 33
19517422 TAAATGCATT
*
19517432 ACTGTACTGTTACTGTATTGGGCTAAGGCCCAC
1 ACTGTACTGATACTGTATTGGGCTAAGGCCCAC
*
19517465 ACTGCTACTGATAGTGTATTGGGCTAAGGCCC
1 ACTG-TACTGATACTGTATTGGGCTAAGGCCC
19517497 TAACTGTTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 4 0.14
34 25 0.86
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (33 bp):
ACTGTACTGATACTGTATTGGGCTAAGGCCCAC
Found at i:19521630 original size:9 final size:9
Alignment explanation
Indices: 19521616--19521643 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
19521606 ATGCTAACCA
19521616 TATGCAAAT
1 TATGCAAAT
19521625 TATGCAAAT
1 TATGCAAAT
19521634 TATGCAAAT
1 TATGCAAAT
19521643 T
1 T
19521644 TTGTGACCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.36
Consensus pattern (9 bp):
TATGCAAAT
Found at i:19523993 original size:42 final size:43
Alignment explanation
Indices: 19523932--19524049 Score: 143
Period size: 43 Copynumber: 2.8 Consensus size: 43
19523922 AATTTTTGTT
19523932 TTACGTGTAAGACCATGTCTGGGACA-TCGGCATCG-TATCTGA
1 TTACGTGTAAGACCATGTCTGGGACAGT-GGCATCGATATCTGA
* * * *
19523974 TTTCGTGTAAGACCTTGTCTGGGACAGTGGCATCGATGTTTGA
1 TTACGTGTAAGACCATGTCTGGGACAGTGGCATCGATATCTGA
* *
19524017 TTACATGTAAGACCACGTCTGGGAC-GTTGGCAT
1 TTACGTGTAAGACCATGTCTGGGACAG-TGGCAT
19524050 TGTATATGTT
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
42 32 0.49
43 33 0.51
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (43 bp):
TTACGTGTAAGACCATGTCTGGGACAGTGGCATCGATATCTGA
Found at i:19524037 original size:43 final size:42
Alignment explanation
Indices: 19523932--19524054 Score: 142
Period size: 42 Copynumber: 2.9 Consensus size: 42
19523922 AATTTTTGTT
19523932 TTACGTGTAAGACCATGTCTGGGACA-TCGGCATCGTATCTGA
1 TTACGTGTAAGACCATGTCTGGGACAGT-GGCATCGTATCTGA
* * * *
19523974 TTTCGTGTAAGACCTTGTCTGGGACAGTGGCATCGATGTTTGA
1 TTACGTGTAAGACCATGTCTGGGACAGTGGCATCG-TATCTGA
* * *
19524017 TTACATGTAAGACCACGTCTGGGAC-GTTGGCATTGTAT
1 TTACGTGTAAGACCATGTCTGGGACAG-TGGCATCGTAT
19524055 ATGTTCTCTG
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 34 0.50
43 34 0.50
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.32
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTGGGACAGTGGCATCGTATCTGA
Done.