Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 72 of 295
Found at i:21993522 original size:27 final size:26
Alignment explanation
Indices: 21993478--21993528 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
21993468 CTCGCTGCAA
*
21993478 TCTGGTGGCCTCGCCACACATATCTAT
1 TCTGGTGACCTCGCCACA-ATATCTAT
* *
21993505 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
21993529 GGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.33
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTAT
Found at i:21993661 original size:6 final size:6
Alignment explanation
Indices: 21993650--21993819 Score: 125
Period size: 6 Copynumber: 27.5 Consensus size: 6
21993640 GCATTCATAA
* *
21993650 TCTGAT TCTGAT TCTG-T TACCTGAT ACTGAT TCTGAT TCTG-T TACCTAAT
1 TCTGAT TCTGAT TCTGAT T--CTGAT TCTGAT TCTGAT TCTGAT T--CTGAT
* * *
21993700 TCTGAT TCTGGT TCTGAT TTTGAT TCTG-T TACCTGAT ACTGAT TCTGAT
1 TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT T--CTGAT TCTGAT TCTGAT
* * *
21993749 TCTG-T TACCTAAT TCTGAT TCTGAT TCTGAT TTTGAT TCTG-T CACCTGAT
1 TCTGAT T--CTGAT TCTGAT TCTGAT TCTGAT TCTGAT TCTGAT --TCTGAT
* *
21993799 TCTGAT TCTCAT TTTGAT TCT
1 TCTGAT TCTGAT TCTGAT TCT
21993820 AGTTCTAATA
Statistics
Matches: 129, Mismatches: 20, Indels: 30
0.72 0.11 0.17
Matches are distributed among these distances:
5 9 0.07
6 100 0.78
7 13 0.10
8 7 0.05
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.49
Consensus pattern (6 bp):
TCTGAT
Found at i:21993679 original size:19 final size:19
Alignment explanation
Indices: 21993676--21993807 Score: 119
Period size: 19 Copynumber: 6.7 Consensus size: 19
21993666 TTACCTGATA
21993676 CTGATTCTGATTCTGTTAC
1 CTGATTCTGATTCTGTTAC
*
21993695 CTAATTCTGATTCTGGTT--
1 CTGATTCTGATTCT-GTTAC
*
21993713 CTGATTTTGATTCTGTTACC
1 CTGATTCTGATTCTGTTA-C
21993733 TGATACTGATTCTGATTCTGTTAC
1 -----CTGATTCTGATTCTGTTAC
*
21993757 CTAATTCTGATTCTGATT--
1 CTGATTCTGATTCTG-TTAC
* *
21993775 CTGATTTTGATTCTGTCAC
1 CTGATTCTGATTCTGTTAC
21993794 CTGATTCTGATTCT
1 CTGATTCTGATTCT
21993808 CATTTTGATT
Statistics
Matches: 92, Mismatches: 9, Indels: 24
0.74 0.07 0.19
Matches are distributed among these distances:
17 4 0.04
18 25 0.27
19 40 0.43
20 5 0.05
24 1 0.01
25 17 0.18
ACGTcount: A:0.17, C:0.19, G:0.15, T:0.48
Consensus pattern (19 bp):
CTGATTCTGATTCTGTTAC
Found at i:21993679 original size:25 final size:25
Alignment explanation
Indices: 21993647--21993715 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
21993637 TTTGCATTCA
21993647 TAAT-CTGATTCTGATTCTGTTACC
1 TAATACTGATTCTGATTCTGTTACC
*
21993671 TGATACTGATTCTGATTCTGTTACC
1 TAATACTGATTCTGATTCTGTTACC
* *
21993696 TAATTCTGATTCTGGTTCTG
1 TAATACTGATTCTGATTCTG
21993716 ATTTTGATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
24 3 0.08
25 37 0.93
ACGTcount: A:0.19, C:0.19, G:0.16, T:0.46
Consensus pattern (25 bp):
TAATACTGATTCTGATTCTGTTACC
Found at i:21993718 original size:37 final size:37
Alignment explanation
Indices: 21993670--21993752 Score: 121
Period size: 37 Copynumber: 2.2 Consensus size: 37
21993660 ATTCTGTTAC
* *
21993670 CTGATACTGATTCTGATTCTGTTACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATACTGATT
* * *
21993707 CTGGTTCTGATTTTGATTCTGTTACCTGATACTGATT
1 CTGATTCTGATTCTGATTCTGTTACCTAATACTGATT
21993744 CTGATTCTG
1 CTGATTCTG
21993753 TTACCTAATT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.18, C:0.18, G:0.17, T:0.47
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTTACCTAATACTGATT
Found at i:21993743 original size:25 final size:25
Alignment explanation
Indices: 21993713--21993777 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
21993703 GATTCTGGTT
* *
21993713 CTGATTTTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTTACCTAATA
*
21993738 CTGATTCTGATTCTGTTACCTAATT
1 CTGATTCTGATTCTGTTACCTAATA
21993763 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
21993778 ATTTTGATTC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.48
Consensus pattern (25 bp):
CTGATTCTGATTCTGTTACCTAATA
Found at i:21993747 original size:62 final size:62
Alignment explanation
Indices: 21993650--21993807 Score: 280
Period size: 62 Copynumber: 2.5 Consensus size: 62
21993640 GCATTCATAA
* *
21993650 TCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGGT
1 TCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGAT
21993712 TCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGAT
1 TCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGAT
* *
21993774 TCTGATTTTGATTCTGTCACCTGATTCTGATTCT
1 TCTGATTTTGATTCTGTTACCTGATACTGATTCT
21993808 CATTTTGATT
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 92 1.00
ACGTcount: A:0.18, C:0.19, G:0.15, T:0.48
Consensus pattern (62 bp):
TCTGATTTTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGAT
Found at i:21993817 original size:37 final size:37
Alignment explanation
Indices: 21993738--21993819 Score: 119
Period size: 37 Copynumber: 2.2 Consensus size: 37
21993728 TTACCTGATA
* *
21993738 CTGATTCTGATTCTGTTACCTAATTCTGATTCTGATT
1 CTGATTCTGATTCTGTCACCTAATTCTGATTCTCATT
* *
21993775 CTGATTTTGATTCTGTCACCTGATTCTGATTCTCATT
1 CTGATTCTGATTCTGTCACCTAATTCTGATTCTCATT
*
21993812 TTGATTCT
1 CTGATTCT
21993820 AGTTCTAATA
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.17, C:0.20, G:0.13, T:0.50
Consensus pattern (37 bp):
CTGATTCTGATTCTGTCACCTAATTCTGATTCTCATT
Found at i:21995808 original size:49 final size:49
Alignment explanation
Indices: 21995689--21996006 Score: 258
Period size: 49 Copynumber: 6.6 Consensus size: 49
21995679 TGATATGTGT
* * * *
21995689 GCCAGTGTAAGACATGTCTGGGACAT-GCATCGGC-CTCGAGATAT-ACAA
1 GCCAGTGTAAGACCTGTCTGGGACATGGCATCGACACT-GATAGATGA-AA
* * * *
21995737 GCTAGTGTAAGAACTGTGTGGGACATGGCATCGACACTGATAGATGAGA
1 GCCAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAAA
* * * * * *
21995786 GCCAGTGTATGACTTGTCTGGGACATGGCATCGTCTC-GTTATATGAAA
1 GCCAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAAA
* * * *
21995834 GTCAGTGTAAGACTTGTCTGGGACATGGCATCGACACCGATAGATGAGA
1 GCCAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAAA
* * * * *
21995883 GCTAGTGTAAGACCTATCTTGGACATGGCATC-AGC-CTCGTTATATGAAA
1 GCCAGTGTAAGACCTGTCTGGGACATGGCATCGA-CACT-GATAGATGAAA
** * **
21995932 GTAAGTGTAAGACCTGTCTGGGACATGGCATCGAC-TTGAT-G-TGTTA
1 GCCAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAAA
* *
21995978 GCTAGTGTAAGACCATGTCTAGGACATGG
1 GCCAGTGTAAGACC-TGTCTGGGACATGG
21996007 TATCAGCGTC
Statistics
Matches: 216, Mismatches: 46, Indels: 17
0.77 0.16 0.06
Matches are distributed among these distances:
46 15 0.07
47 13 0.06
48 67 0.31
49 117 0.54
50 4 0.02
ACGTcount: A:0.27, C:0.18, G:0.29, T:0.26
Consensus pattern (49 bp):
GCCAGTGTAAGACCTGTCTGGGACATGGCATCGACACTGATAGATGAAA
Found at i:21995856 original size:97 final size:97
Alignment explanation
Indices: 21995689--21996013 Score: 367
Period size: 97 Copynumber: 3.4 Consensus size: 97
21995679 TGATATGTGT
* **
21995689 GCCAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATAT-ACAAG-CTAGTGTAAGAAC
1 GCCAGTGTAAGACATGTCTGGGACATGGCATCAGCCTCGTTATATGA-AAGTC-AGTGTAAG-AC
* *
21995751 TGTGTGGGACATGGCATCGACACTGATAGATGAGA
63 TGTCTGGGACATGGCATCGACACCGATAGATGAGA
* * *
21995786 GCCAGTGTATGACTTGTCTGGGACATGGCATC-GTCTCGTTATATGAAAGTCAGTGTAAGACTTG
1 GCCAGTGTAAGACATGTCTGGGACATGGCATCAGCCTCGTTATATGAAAGTCAGTGTAAGAC-TG
21995850 TCTGGGACATGGCATCGACACCGATAGATGAGA
65 TCTGGGACATGGCATCGACACCGATAGATGAGA
* * * * *
21995883 GCTAGTGTAAGACCTATCTTGGACATGGCATCAGCCTCGTTATATGAAAGTAAGTGTAAGACCTG
1 GCCAGTGTAAGACATGTCTGGGACATGGCATCAGCCTCGTTATATGAAAGTCAGTGTAAGA-CTG
** **
21995948 TCTGGGACATGGCATCGAC-TTGAT-G-TGTTA
65 TCTGGGACATGGCATCGACACCGATAGATGAGA
* * *
21995978 GCTAGTGTAAGACCATGTCTAGGACATGGTATCAGC
1 GCCAGTGTAAGA-CATGTCTGGGACATGGCATCAGC
21996014 GTCTTATCCC
Statistics
Matches: 199, Mismatches: 22, Indels: 15
0.84 0.09 0.06
Matches are distributed among these distances:
95 15 0.08
96 22 0.11
97 107 0.54
98 54 0.27
99 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.26
Consensus pattern (97 bp):
GCCAGTGTAAGACATGTCTGGGACATGGCATCAGCCTCGTTATATGAAAGTCAGTGTAAGACTGT
CTGGGACATGGCATCGACACCGATAGATGAGA
Found at i:21995914 original size:146 final size:145
Alignment explanation
Indices: 21995691--21995964 Score: 331
Period size: 146 Copynumber: 1.9 Consensus size: 145
21995681 ATATGTGTGC
* * * *
21995691 CAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATACAAGCTAGTGTAAGAACTGTGT
1 CAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGAGATACAAGCTAGTGTAAGAACTATCT
* * * *
21995756 GGGACATGGCATC-GACACT-GATAGATGAGAGCCAGTGTATGACTTGTCTGGGACATGGCATCG
66 GGGACATGGCATCAG-C-CTCGATAGATGAAAGCAAGTGTAAGACCTGTCTGGGACATGGCATCG
21995819 TCTCGTTATATGAAAGT
129 TCTCGTTATATGAAAGT
* * * *
21995836 CAGTGTAAGACTTGTCTGGGACATGGCATCGACAC-CGATAGATGA-GAGCTAGTGTAAGACCTA
1 CAGTGTAAGACATGTCTGGGACAT-GCATCGAC-CTCGAGAGAT-ACAAGCTAGTGTAAGAACTA
* * * *
21995899 TCTTGGACATGGCATCAGCCTCGTTATATGAAAGTAAGTGTAAGACCTGTCTGGGACATGGCATC
63 TCTGGGACATGGCATCAGCCTCGATAGATGAAAGCAAGTGTAAGACCTGTCTGGGACATGGCATC
21995964 G
128 G
21995965 ACTTGATGTG
Statistics
Matches: 108, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
145 25 0.23
146 80 0.74
147 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (145 bp):
CAGTGTAAGACATGTCTGGGACATGCATCGACCTCGAGAGATACAAGCTAGTGTAAGAACTATCT
GGGACATGGCATCAGCCTCGATAGATGAAAGCAAGTGTAAGACCTGTCTGGGACATGGCATCGTC
TCGTTATATGAAAGT
Found at i:21996620 original size:14 final size:14
Alignment explanation
Indices: 21996601--21996629 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
21996591 ATTTCATGAA
21996601 TGAGAAATTGTTGG
1 TGAGAAATTGTTGG
21996615 TGAGAAATTGTTGG
1 TGAGAAATTGTTGG
21996629 T
1 T
21996630 ATGGTTGACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (14 bp):
TGAGAAATTGTTGG
Found at i:21998361 original size:26 final size:26
Alignment explanation
Indices: 21998311--21998361 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
21998301 TATTCTAGCA
**
21998311 ATAACTAGGGTTTACATTTTTAAAAT
1 ATAACTAGGGTTTACATTTGGAAAAT
*
21998337 ATAACTAGGGTTTATATTTGGAAAA
1 ATAACTAGGGTTTACATTTGGAAAA
21998362 ATACCCATAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.39, C:0.06, G:0.16, T:0.39
Consensus pattern (26 bp):
ATAACTAGGGTTTACATTTGGAAAAT
Found at i:22000196 original size:79 final size:82
Alignment explanation
Indices: 22000085--22000269 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
22000075 GCTACTCGTT
* * *
22000085 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
22000148 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
22000165 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
22000228 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
22000245 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
22000270 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:22000269 original size:40 final size:40
Alignment explanation
Indices: 22000066--22000269 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
22000056 CGGAATTTAA
** *
22000066 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
22000106 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
22000146 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
22000185 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
22000225 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
22000265 CCGGA
1 CCGGA
22000270 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:22007602 original size:42 final size:42
Alignment explanation
Indices: 22007556--22007675 Score: 123
Period size: 43 Copynumber: 2.8 Consensus size: 42
22007546 ATCCGTTTTG
* *
22007556 CGTGTAAAACCATGTCTGGGACATTGGCATTGTATCTGATTT
1 CGTGTAAGACCATGTCTGGGACATTGGCATTGTATCTGATTA
* * * * * *
22007598 CGTGTAAGACCTTTTCTGGGACAATGGCATCGATGTTTGATTA
1 CGTGTAAGACCATGTCTGGGACATTGGCATTG-TATCTGATTA
* * * *
22007641 CATGTAAGACCATGTCTAGGACGTAGGCATTGTAT
1 CGTGTAAGACCATGTCTGGGACATTGGCATTGTAT
22007676 ATGCTTTCTG
Statistics
Matches: 60, Mismatches: 17, Indels: 2
0.76 0.22 0.03
Matches are distributed among these distances:
42 29 0.48
43 31 0.52
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACATTGGCATTGTATCTGATTA
Found at i:22010116 original size:21 final size:20
Alignment explanation
Indices: 22010083--22010121 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
22010073 CCTTTGTCGA
22010083 GTCTCACTCCTC-AGTGTGT
1 GTCTCACTCCTCAAGTGTGT
22010102 GTCTCCACTACCTCAAGTGT
1 GTCT-CACT-CCTCAAGTGT
22010122 TTCCTTCACT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 4 0.24
21 4 0.24
22 5 0.29
ACGTcount: A:0.15, C:0.33, G:0.18, T:0.33
Consensus pattern (20 bp):
GTCTCACTCCTCAAGTGTGT
Found at i:22012368 original size:3 final size:3
Alignment explanation
Indices: 22012360--22012391 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
22012350 AATTCATACT
22012360 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
22012392 TTTCATCATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:22012710 original size:39 final size:38
Alignment explanation
Indices: 22012640--22012736 Score: 106
Period size: 39 Copynumber: 2.5 Consensus size: 38
22012630 CACACCAATA
*
22012640 TGACACCCAGTGTCTCATCGGATAGTTCGAAGTAATAGT
1 TGACACCCAGTGTCTCATCGGATAGTCCGAAGTAA-AGT
* *
22012679 TGACACCTAGTGTCTCATCGGCCTAG-CCGAAGTAAAGT
1 TGACACCCAGTGTCTCATCGG-ATAGTCCGAAGTAAAGT
** **
22012717 TGGTACCCAGTACCTCATCG
1 TGACACCCAGTGTCTCATCG
22012737 AATCTATCCG
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
38 18 0.37
39 28 0.57
40 3 0.06
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (38 bp):
TGACACCCAGTGTCTCATCGGATAGTCCGAAGTAAAGT
Found at i:22018162 original size:15 final size:15
Alignment explanation
Indices: 22018130--22018158 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
22018120 ATTTTCAGTG
22018130 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
22018145 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
22018159 ATTTTTGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:22031640 original size:42 final size:42
Alignment explanation
Indices: 22031593--22031713 Score: 127
Period size: 42 Copynumber: 2.9 Consensus size: 42
22031583 TAGGGTTAGT
*
22031593 TGAGATTACGTGAAAGACCATATCTGGGATATGGCATCAATA
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCAATA
* * * * * *
22031635 TGAGATTTCGTGTAAGACAATAGCTGGGCTATTAGCATCGATA
1 TGAGATTACGTGTAAGACCATATCTGGGATA-TGGCATCAATA
** * *
22031678 TGAGATCCCATGTAAGACCGTATCT-GGATATGGCAT
1 TGAGATTACGTGTAAGACCATATCTGGGATATGGCAT
22031714 TGGTATGATA
Statistics
Matches: 63, Mismatches: 15, Indels: 3
0.78 0.19 0.04
Matches are distributed among these distances:
41 5 0.08
42 30 0.48
43 28 0.44
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (42 bp):
TGAGATTACGTGTAAGACCATATCTGGGATATGGCATCAATA
Found at i:22031842 original size:20 final size:20
Alignment explanation
Indices: 22031796--22031842 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
22031786 CGGCAAAGTT
*
22031796 TAAGTTGTGAAAGACTATGG
1 TAAGTTGTGAAAGACTATGA
* *
22031816 TATGTTGTGAAAGATTATGA
1 TAAGTTGTGAAAGACTATGA
22031836 TAAGTTG
1 TAAGTTG
22031843 CAAGTTGGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.34, C:0.02, G:0.28, T:0.36
Consensus pattern (20 bp):
TAAGTTGTGAAAGACTATGA
Found at i:22035411 original size:27 final size:27
Alignment explanation
Indices: 22035371--22035424 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
22035361 AGGTACAACC
*
22035371 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAATAATAATTTAACATTCAATT
**
22035398 CATGTAATAATAATTTGTCATTCAATT
1 CATGTAATAATAATTTAACATTCAATT
22035425 TCACATGACA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.39, C:0.11, G:0.07, T:0.43
Consensus pattern (27 bp):
CATGTAATAATAATTTAACATTCAATT
Found at i:22035743 original size:30 final size:30
Alignment explanation
Indices: 22035702--22035758 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
22035692 AAAATCATAT
22035702 TTTGGTAAAATTA-TAATTTTACCCCTAAAC
1 TTTGGTAAAATTACT-ATTTTACCCCTAAAC
* *
22035732 TTTGTTAAAATTACTTTTTTACCCCTA
1 TTTGGTAAAATTACTATTTTACCCCTA
22035759 GGCTCGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 23 0.96
31 1 0.04
ACGTcount: A:0.32, C:0.18, G:0.05, T:0.46
Consensus pattern (30 bp):
TTTGGTAAAATTACTATTTTACCCCTAAAC
Found at i:22040085 original size:19 final size:19
Alignment explanation
Indices: 22040061--22040098 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
22040051 GCCATACGAA
*
22040061 TTGGGCTTTGTCACACTGC
1 TTGGGCTCTGTCACACTGC
22040080 TTGGGCTCTGTCACACTGC
1 TTGGGCTCTGTCACACTGC
22040099 CCGGCCACGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.11, C:0.29, G:0.26, T:0.34
Consensus pattern (19 bp):
TTGGGCTCTGTCACACTGC
Found at i:22042570 original size:27 final size:27
Alignment explanation
Indices: 22042538--22042799 Score: 244
Period size: 27 Copynumber: 9.7 Consensus size: 27
22042528 TTAGTTTACC
* *
22042538 AAATTACCAAAGTACCCCTGATTTATA
1 AAATTACCAAAATACCCCTGATTTGTA
* **** * *
22042565 GAATTACCGTTTTA-CCCTCGATTAGCA
1 AAATTACCAAAATACCCCT-GATTTGTA
*
22042592 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
*
22042619 AAATTACCAAAATACCCCT-AGTTTATA
1 AAATTACCAAAATACCCCTGA-TTTGTA
*
22042646 AAATTACCAAAATACCCCT-AGTTTGTG
1 AAATTACCAAAATACCCCTGA-TTTGTA
** * *
22042673 AACCTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGATTTGTA
** *
22042700 AAATTACTGAAATA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GATTTGTA
* * **
22042727 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGATTTGTA
*
22042754 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTA
22042781 AAATTACCAAAATACCCCT
1 AAATTACCAAAATACCCCT
22042800 ATAGGGTAGA
Statistics
Matches: 190, Mismatches: 39, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
26 8 0.04
27 174 0.92
28 8 0.04
ACGTcount: A:0.38, C:0.24, G:0.09, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTGTA
Found at i:22042636 original size:81 final size:81
Alignment explanation
Indices: 22042538--22042799 Score: 271
Period size: 81 Copynumber: 3.2 Consensus size: 81
22042528 TTAGTTTACC
* * ****
22042538 AAATTACCAAAGTACCCCTGATTTATAGAATTACCGTTTTACCCTCGATTAGCAAAATTACCAAA
1 AAATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCTCGATTAGCAAAATTACCAAA
22042603 ATACCCCTGGTTTGTA
66 ATACCCCTGGTTTGTA
* * ** **
22042619 AAATTACCAAAATACCCCT-AGTTTATAAAATTACCAAAATACCC-CTAGTTTGTGAACCTACCA
1 AAATTACCAAAATACCCCTGA-TTTATAAAATTACCAAAATACCCTCGA-TTAGCAAAATTACCA
** *
22042682 AAATACCCCTAATTTGTG
64 AAATACCCCTGGTTTGTA
** * * * *
22042700 AAATTACTGAAATA-CCCTCGACTTGTAAAATTACCAAAATACCCTTGGTTTA-CAAAATTACCA
1 AAATTACCAAAATACCCCT-GATTTATAAAATTACCAAAATACCC-TCGATTAGCAAAATTACCA
22042763 AAATACCCCTGGTTTGTA
64 AAATACCCCTGGTTTGTA
22042781 AAATTACCAAAATACCCCT
1 AAATTACCAAAATACCCCT
22042800 ATAGGGTAGA
Statistics
Matches: 142, Mismatches: 32, Indels: 13
0.76 0.17 0.07
Matches are distributed among these distances:
80 7 0.05
81 128 0.90
82 7 0.05
ACGTcount: A:0.38, C:0.24, G:0.09, T:0.29
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGATTTATAAAATTACCAAAATACCCTCGATTAGCAAAATTACCAAA
ATACCCCTGGTTTGTA
Found at i:22042814 original size:27 final size:27
Alignment explanation
Indices: 22042755--22042931 Score: 212
Period size: 27 Copynumber: 6.6 Consensus size: 27
22042745 TGGTTTACAA
* ** *
22042755 AATTACCAAAATACCCCTGGT-TTGTAA
1 AATTACCGAAATACCCCT-GTAGGGTAG
* *
22042782 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
22042809 AGTTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
22042836 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
22042863 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
22042890 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
22042917 AATTACTGAGATACC
1 AATTACCGAAATACC
22042932 TTTGTGGGGT
Statistics
Matches: 129, Mismatches: 20, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
26 1 0.01
27 128 0.99
ACGTcount: A:0.37, C:0.21, G:0.19, T:0.24
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:22042815 original size:54 final size:53
Alignment explanation
Indices: 22042593--22042922 Score: 226
Period size: 54 Copynumber: 6.1 Consensus size: 53
22042583 CGATTAGCAA
*** *
22042593 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGT-TTATAA
1 AATTACCAAAATA-CCCTGGTTTGTAAAATTACCAAAATACCCCTA-TAGGGTAG
* * ** **
22042647 AATTACCAAAATACCCCTAGTTTGTGAACCTACCAAAATACCCCTA-ATTTGT-G
1 AATTACCAAAATA-CCCTGGTTTGTAAAATTACCAAAATACCCCTATA-GGGTAG
** ** * *
22042700 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAATA-CCCT-T-GGTTTACAA
1 -AATTACCAAAATACCCT-GGTTTGTAAAATTACCAAAATACCCCTATAGG-GT--AG
22042755 AATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTATAGGGTAG
1 AATTACCAAAATA-CCCTGGTTTGTAAAATTACCAAAATACCCCTATAGGGTAG
* * * ** * *
22042809 AGTTACCGAAATACCCTTGTAGGGTAGAAA-TACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCTGGT-TTGTA-AAATTACCAAAATACCCCTATAGGGTAG
* ** * *
22042863 AATTACCAAAATACCCTTGTAGGGTAGAAA-TACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCTGGT-TTGTA-AAATTACCAAAATACCCCTATAGGGTAG
22042917 AATTAC
1 AATTAC
22042923 TGAGATACCT
Statistics
Matches: 228, Mismatches: 33, Indels: 30
0.78 0.11 0.10
Matches are distributed among these distances:
52 1 0.00
53 14 0.06
54 198 0.87
55 11 0.05
56 2 0.01
57 2 0.01
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (53 bp):
AATTACCAAAATACCCTGGTTTGTAAAATTACCAAAATACCCCTATAGGGTAG
Found at i:22042815 original size:81 final size:81
Alignment explanation
Indices: 22042590--22042827 Score: 255
Period size: 81 Copynumber: 2.9 Consensus size: 81
22042580 CCTCGATTAG
* ***
22042590 CAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTAGTTTATAAAATTACCA
1 CAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTACTGGGTAAAATTACCA
* * *
22042655 AAATACCCCTAGTTTG
66 AAATACCCTTGGTTTA
** ** ** * ** * *
22042671 TGAACCTACCAAAATACCCCTAATTTGTGAAATTACTGAAATACCCTCGACT-TGTAAAATTACC
1 CAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCC-CTACTGGGTAAAATTACC
22042735 AAAATACCCTTGGTTTA
65 AAAATACCCTTGGTTTA
* *
22042752 CAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTA-TAGGGTAGAGTTACC
1 CAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTACT-GGGTAAAATTACC
*
22042816 GAAATACCCTTG
65 AAAATACCCTTG
22042828 TAGGGTAGAA
Statistics
Matches: 125, Mismatches: 29, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
79 1 0.01
80 2 0.02
81 119 0.95
82 3 0.02
ACGTcount: A:0.39, C:0.24, G:0.10, T:0.28
Consensus pattern (81 bp):
CAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCCTACTGGGTAAAATTACCA
AAATACCCTTGGTTTA
Found at i:22042931 original size:54 final size:54
Alignment explanation
Indices: 22042785--22042946 Score: 245
Period size: 54 Copynumber: 3.0 Consensus size: 54
22042775 TTTGTAAAAT
* * *
22042785 TACCAAAATACCCCTATAGGGTAGAGTTACCGAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAA
*
22042839 TACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTAGGGTAGAAA
1 TACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAA
* * * *
22042893 TACCGAAATACCCCTGTAGGGTAGAATTACTGAGATACCTTTGTGGGGTA-AAA
1 TACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAA
22042946 T
1 T
22042947 TATCATTTTG
Statistics
Matches: 99, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
53 4 0.04
54 95 0.96
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (54 bp):
TACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAA
Found at i:22042941 original size:27 final size:27
Alignment explanation
Indices: 22042782--22042948 Score: 208
Period size: 27 Copynumber: 6.2 Consensus size: 27
22042772 TGGTTTGTAA
* * *
22042782 AATTACCAAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
22042809 AGTTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
22042836 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
22042863 AATTACCAAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
22042890 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * * *
22042917 AATTACTGAGATACCTTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
22042944 AATTA
1 AATTA
22042949 TCATTTTGCC
Statistics
Matches: 120, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 120 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:22042942 original size:81 final size:81
Alignment explanation
Indices: 22042778--22042948 Score: 234
Period size: 81 Copynumber: 2.1 Consensus size: 81
22042768 CCCCTGGTTT
** *
22042778 GTAAAATTACCAAAATACCCCTATAGGGTAGAGTTACCGAAATACCCTTGTAGGGTAGAAATACC
1 GTAAAATTACCAAAATACCCCTATAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACC
22042843 GAAATACCCCTGTAGG
66 GAAATACCCCTGTAGG
* * * * *
22042859 GTAGAATTACCAAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACT
1 GTAAAATTACCAAAATACCCCTATAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACC
* ** *
22042924 GAGATACCTTTGTGGG
66 GAAATACCCCTGTAGG
22042940 GTAAAATTA
1 GTAAAATTA
22042949 TCATTTTGCC
Statistics
Matches: 77, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.25
Consensus pattern (81 bp):
GTAAAATTACCAAAATACCCCTATAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAAATACC
GAAATACCCCTGTAGG
Found at i:22043212 original size:24 final size:24
Alignment explanation
Indices: 22043180--22043226 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
22043170 CAGTTTACCA
**
22043180 AAAAGGGCTTTGCCT-CAGTTATT
1 AAAAGGGCTAGGCCTCCAGTTATT
22043203 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTAGGCCTCCAGTTAT
22043227 ATGATAAAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 8 0.40
25 7 0.35
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTAGGCCTCCAGTTATT
Found at i:22045904 original size:20 final size:20
Alignment explanation
Indices: 22045875--22045919 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
22045865 AGCACATGTA
*
22045875 TTCATAAAATTTTAGAATTT
1 TTCATAAAATTTTAGAACTT
* *
22045895 TTCATCAAATTTTATAACTT
1 TTCATAAAATTTTAGAACTT
22045915 TTCAT
1 TTCAT
22045920 TTTAGTCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.11, G:0.02, T:0.51
Consensus pattern (20 bp):
TTCATAAAATTTTAGAACTT
Found at i:22052599 original size:31 final size:31
Alignment explanation
Indices: 22052561--22052624 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
22052551 CCTTTTCATA
22052561 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
** *
22052592 TTTCATATTTCATATTATTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
22052623 TT
1 TT
22052625 ACTGTAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:22052869 original size:24 final size:24
Alignment explanation
Indices: 22052818--22052935 Score: 136
Period size: 24 Copynumber: 5.0 Consensus size: 24
22052808 GCTTTATCAT
*
22052818 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
22052843 ATAACTGGGGCAAAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
** * *
22052867 ATAACTAAGGTACAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
22052890 ATAACTGGGGCATAAG-CC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
22052912 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
22052936 CACTTCCTCC
Statistics
Matches: 80, Mismatches: 10, Indels: 7
0.82 0.10 0.07
Matches are distributed among these distances:
22 22 0.28
23 18 0.22
24 28 0.35
25 12 0.15
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.28
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:22052912 original size:22 final size:23
Alignment explanation
Indices: 22052839--22052933 Score: 129
Period size: 22 Copynumber: 4.1 Consensus size: 23
22052829 CCTAGCCTCT
*
22052839 TTTAATAACTGGGGCAAAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
** * *
22052862 TTTTAATAACTAAGGTACAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
22052886 TTTAATAACTGGGGCATAAG-CC
1 TTTAATAACTGGGGCATAAGCCC
22052908 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
22052931 TTT
1 TTT
22052934 TACACTTCCT
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
22 22 0.35
23 21 0.34
24 19 0.31
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:22053010 original size:20 final size:20
Alignment explanation
Indices: 22052985--22053023 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
22052975 TATGATTACA
22052985 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
22053005 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
22053024 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:22053029 original size:20 final size:20
Alignment explanation
Indices: 22052986--22053030 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
22052976 ATGATTACAT
**
22052986 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
22053006 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
22053026 CATGT
1 CATGT
22053031 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:22058125 original size:43 final size:43
Alignment explanation
Indices: 22058022--22058136 Score: 119
Period size: 44 Copynumber: 2.7 Consensus size: 43
22058012 TGTAATTTCG
* * * *
22058022 TGTAAGACCATGTCTGAGATAGTGGCATCGATTTGATATTTAC
1 TGTAAGACCACGTCTGGGACAGTGGCATCGATTTGATATATAC
* *
22058065 GTGTAAGACCCCATCTGGGACAGTGGCATCGATATTTGAT-TATA-
1 -TGTAAGACCACGTCTGGGACAGTGGCATCG--ATTTGATATATAC
22058109 TGTAAGACCACGTCTGGGAC-GTTGGCAT
1 TGTAAGACCACGTCTGGGACAG-TGGCAT
22058137 TGTACGAGCT
Statistics
Matches: 60, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
42 1 0.02
43 24 0.40
44 25 0.42
45 3 0.05
46 7 0.12
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCGATTTGATATATAC
Found at i:22067830 original size:29 final size:29
Alignment explanation
Indices: 22067796--22067869 Score: 114
Period size: 29 Copynumber: 2.6 Consensus size: 29
22067786 TAATCAACCA
*
22067796 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
*
22067825 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTTAGTGCCATGCATTTCAAACT
22067854 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
22067870 ATCTCACAAC
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
28 3 0.07
29 39 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:22083639 original size:46 final size:45
Alignment explanation
Indices: 22083423--22083639 Score: 158
Period size: 46 Copynumber: 4.7 Consensus size: 45
22083413 ATTGTGAGCT
* *** *
22083423 AGTGTAAGACATGTCTGGGACAT-GCATCAGC-CACATTGTGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCTCA-AGAAT-A-AGTC
* * * ** *
22083469 AGTGTAAAACTATGTTTGGGACATGGCATCTGCATTGAG-ACAAGTGC
1 AGTGTAAGAC-ATGTCTGGGACATGGCATCGGC-TCAAGAATAAGT-C
* *
22083516 TAGTGTAAGATATGTCTGGGACA-GGCATCGACCTCAAGACATAAGTC
1 -AGTGTAAGACATGTCTGGGACATGGCATCG-GCTCAAGA-ATAAGTC
**
22083563 AGTGTAAGACATGTCTGGGACAT-GCATCGGCTGCAAG-ATGTGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCT-CAAGAATAAGTC
22083607 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGC
22083640 ACAGATATGC
Statistics
Matches: 137, Mismatches: 21, Indels: 26
0.74 0.11 0.14
Matches are distributed among these distances:
44 14 0.10
45 16 0.12
46 59 0.43
47 27 0.20
48 20 0.15
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCTCAAGAATAAGTC
Found at i:22093036 original size:79 final size:82
Alignment explanation
Indices: 22092925--22093109 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
22092915 GCTACTCGTT
* *
22092925 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
22092988 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
22093005 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
22093068 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
22093085 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
22093110 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:22093109 original size:40 final size:40
Alignment explanation
Indices: 22092906--22093109 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
22092896 CGGAATTTAA
** *
22092906 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
22092946 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
22092986 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
22093025 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
22093065 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
22093105 CCGGA
1 CCGGA
22093110 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:22100336 original size:79 final size:82
Alignment explanation
Indices: 22100225--22100409 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
22100215 GCTACTCGTT
* *
22100225 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
22100288 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
22100305 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
22100368 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
22100385 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
22100410 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:22100409 original size:40 final size:40
Alignment explanation
Indices: 22100206--22100409 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
22100196 CGGAATTTAA
** *
22100206 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
22100246 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
22100286 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
22100325 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
22100365 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
22100405 CCGGA
1 CCGGA
22100410 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:22104786 original size:53 final size:53
Alignment explanation
Indices: 22104706--22104813 Score: 207
Period size: 53 Copynumber: 2.0 Consensus size: 53
22104696 ACTCTTTTAT
*
22104706 TTCGAGTATGTCAACCAGCAGTTTAATGTCTTCATTGAACCCGTCTTCAAATC
1 TTCGAGTATGTCAACCAGCAGTTTAATGTCTTCATTGAAACCGTCTTCAAATC
22104759 TTCGAGTATGTCAACCAGCAGTTTAATGTCTTCATTGAAACCGTCTTCAAATC
1 TTCGAGTATGTCAACCAGCAGTTTAATGTCTTCATTGAAACCGTCTTCAAATC
22104812 TT
1 TT
22104814 TTACACATTA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (53 bp):
TTCGAGTATGTCAACCAGCAGTTTAATGTCTTCATTGAAACCGTCTTCAAATC
Found at i:22105643 original size:113 final size:113
Alignment explanation
Indices: 22105445--22105675 Score: 462
Period size: 113 Copynumber: 2.0 Consensus size: 113
22105435 GCGCTATACT
22105445 CTCAACATCATCAACTACGGCTCTGTCGAGATTCATTACTATACGAATAAACATTTTCAAATGTC
1 CTCAACATCATCAACTACGGCTCTGTCGAGATTCATTACTATACGAATAAACATTTTCAAATGTC
22105510 AGAAGTCATCACACTATCACAATATATAATATGGCAAGTATATCTAGA
66 AGAAGTCATCACACTATCACAATATATAATATGGCAAGTATATCTAGA
22105558 CTCAACATCATCAACTACGGCTCTGTCGAGATTCATTACTATACGAATAAACATTTTCAAATGTC
1 CTCAACATCATCAACTACGGCTCTGTCGAGATTCATTACTATACGAATAAACATTTTCAAATGTC
22105623 AGAAGTCATCACACTATCACAATATATAATATGGCAAGTATATCTAGA
66 AGAAGTCATCACACTATCACAATATATAATATGGCAAGTATATCTAGA
22105671 CTCAA
1 CTCAA
22105676 ACGCGCTACA
Statistics
Matches: 118, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
113 118 1.00
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (113 bp):
CTCAACATCATCAACTACGGCTCTGTCGAGATTCATTACTATACGAATAAACATTTTCAAATGTC
AGAAGTCATCACACTATCACAATATATAATATGGCAAGTATATCTAGA
Found at i:22107872 original size:43 final size:45
Alignment explanation
Indices: 22107836--22107922 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
22107826 CATATCAAAG
* *
22107836 CCAACGTCCTAGACGTGGTCTTACATGAAAACACATATATAGATA
1 CCAACGTCCCAGACGTGGTCTTACAGGAAAACACATATATAGATA
22107881 CCAACGTCCCAGACGTGGTCTTACAGGAAAACACATAT-TAGA
1 CCAACGTCCCAGACGTGGTCTTACAGGAAAACACATATATAGA
22107923 ATCCTATGGT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 4 0.10
45 36 0.90
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.22
Consensus pattern (45 bp):
CCAACGTCCCAGACGTGGTCTTACAGGAAAACACATATATAGATA
Found at i:22109036 original size:14 final size:15
Alignment explanation
Indices: 22109019--22109047 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
22109009 TCACGAAAAT
22109019 TTCACACAT-ATAAA
1 TTCACACATAATAAA
22109033 TTCACACATAATAAA
1 TTCACACATAATAAA
22109048 CACATAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:22112962 original size:43 final size:42
Alignment explanation
Indices: 22112841--22112964 Score: 135
Period size: 43 Copynumber: 2.9 Consensus size: 42
22112831 GACGATGGAT
* *
22112841 TTTGATTTCGTGTAAGACCACGTCTGGGACGATGGCA-CCGTA
1 TTTGATTTCGTGTAAGACCAAGTCTGGGACG-TGGCATTCGTA
* * *
22112883 TTTGATTTCGTGTAAGACCCTA-TCTAGGACAGTGGCATTGGTA
1 TTTGATTTCGTGTAAGA-CCAAGTCTGGGAC-GTGGCATTCGTA
* *
22112926 TTTGATTACATGTAAGACCAAGTCTGGGACGTTGGCATT
1 TTTGATTTCGTGTAAGACCAAGTCTGGGACG-TGGCATT
22112965 ATACGAGCTT
Statistics
Matches: 68, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
42 33 0.49
43 35 0.51
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (42 bp):
TTTGATTTCGTGTAAGACCAAGTCTGGGACGTGGCATTCGTA
Found at i:22113563 original size:23 final size:22
Alignment explanation
Indices: 22113501--22113544 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
22113491 TAGCCATGTG
22113501 ATATGGCTTAATTATGGTTGAA
1 ATATGGCTTAATTATGGTTGAA
22113523 ATATGGCTTAATTATGGTTGAA
1 ATATGGCTTAATTATGGTTGAA
22113545 CTTATGGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.05, G:0.23, T:0.41
Consensus pattern (22 bp):
ATATGGCTTAATTATGGTTGAA
Found at i:22115142 original size:43 final size:43
Alignment explanation
Indices: 22115047--22115158 Score: 138
Period size: 43 Copynumber: 2.6 Consensus size: 43
22115037 ATCGAGATGT
* * *
22115047 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTTA
1 GATTACGTGTAAGACCATGTCTGGGACATTAGCATTGTAATTA
22115090 GATTACGTGTAAGACCATGTCTGGGACATTAGCATCAT-TAATTA
1 GATTACGTGTAAGACCATGTCTGGGACATTAGCAT--TGTAATTA
* * *
22115134 -ATTTCGTGTAAGACCCTGTCCGGGA
1 GATTACGTGTAAGACCATGTCTGGGA
22115159 TAGTGGCATC
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
43 55 0.90
44 5 0.08
45 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTAGCATTGTAATTA
Found at i:22117114 original size:53 final size:53
Alignment explanation
Indices: 22116937--22117143 Score: 180
Period size: 53 Copynumber: 3.8 Consensus size: 53
22116927 ATTAGGATTT
* * * * * **
22116937 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGAT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * ** * * * *
22116991 AAGGAAATCATGTAAGACCATGTCAAGACATAACATTGATAAACTACGATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * *
22117046 AAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* * *
22117099 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGCAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
22117144 TAAAAATGAA
Statistics
Matches: 117, Mismatches: 34, Indels: 5
0.75 0.22 0.03
Matches are distributed among these distances:
53 45 0.38
54 36 0.31
55 36 0.31
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:22122348 original size:46 final size:45
Alignment explanation
Indices: 22122292--22122467 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
22122282 TATTTGGGCA
22122292 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *** * *
22122338 TCTGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
22122385 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* *
22122431 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
22122468 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 31 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:22122447 original size:93 final size:93
Alignment explanation
Indices: 22122288--22122459 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
22122278 AGGATATTTG
* * *
22122288 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
22122353 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
22122381 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
22122446 TTGAGTCCGAGTTC
66 TTGAGTCCGAGTTC
22122460 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:22132064 original size:19 final size:19
Alignment explanation
Indices: 22132033--22132083 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
22132023 CTATAGCCAC
22132033 TCACAATTT-CAA-TTATT
1 TCACAATTTACAATTTATT
22132050 TCACACATTTACAATTTATT
1 TCACA-ATTTACAATTTATT
*
22132070 TTACAACTTTACAA
1 TCACAA-TTTACAA
22132084 AATAGCCATT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (19 bp):
TCACAATTTACAATTTATT
Found at i:22136398 original size:15 final size:15
Alignment explanation
Indices: 22136378--22136408 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
22136368 TTTATAGCTT
22136378 AGTAAGACCGTATAA
1 AGTAAGACCGTATAA
22136393 AGTAAGACCGTATAA
1 AGTAAGACCGTATAA
22136408 A
1 A
22136409 AAATAATAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.13, G:0.19, T:0.19
Consensus pattern (15 bp):
AGTAAGACCGTATAA
Found at i:22138412 original size:19 final size:19
Alignment explanation
Indices: 22138381--22138431 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
22138371 CTATAGCAAC
22138381 TCACAATTT-CAA-TTATT
1 TCACAATTTACAATTTATT
22138398 TCACACATTTACAATTTATT
1 TCACA-ATTTACAATTTATT
*
22138418 TTACAACTTTACAA
1 TCACAA-TTTACAA
22138432 AATAGCCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (19 bp):
TCACAATTTACAATTTATT
Found at i:22140502 original size:43 final size:42
Alignment explanation
Indices: 22140454--22140620 Score: 162
Period size: 43 Copynumber: 3.9 Consensus size: 42
22140444 ATCGAGATGT
22140454 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTG
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTG
* * *
22140496 AGATTACGTGTAAGACCATGTCTGGGACATCGGCATCGTTAATT-
1 -GATTACATGTAAGACCATGTCTGGGACATTGGCATTG-T-ATTG
* * * * *
22140540 GATTTCGTGTAAGACCCTGTCTAGGACAGTGGCATTG-ATATG
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTAT-TG
* *
22140582 TGA-TAGCATGTATGACCATATCTGGGACA-TGGCATTGTA
1 -GATTA-CATGTAAGACCATGTCTGGGACATTGGCATTGTA
22140621 CGAGCTTATA
Statistics
Matches: 102, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
40 2 0.02
41 1 0.01
42 9 0.09
43 86 0.84
44 1 0.01
45 3 0.03
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (42 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATTGTATTG
Found at i:22143136 original size:15 final size:15
Alignment explanation
Indices: 22143116--22143145 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22143106 ATTTTTACAG
22143116 CTCATGTAAGCATAC
1 CTCATGTAAGCATAC
*
22143131 CTCATGTGAGCATAC
1 CTCATGTAAGCATAC
22143146 ATGTACAAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (15 bp):
CTCATGTAAGCATAC
Found at i:22146469 original size:67 final size:65
Alignment explanation
Indices: 22146263--22146445 Score: 182
Period size: 63 Copynumber: 2.8 Consensus size: 65
22146253 ATATAGTTCG
* * * * *
22146263 GCTCTCTTGTAC-ACATGGTG-A-ACACTTAGTACCACCCATGTGACCTAGC--CAGTTTATCTC
1 GCTCTCTTGT-CTACATGGTGTACTCAC-TAGAACCACCCATGCGACCTAGCTACA-TATATCCC
22146323 GTA
63 GTA
* * *
22146326 GCTCTCTTGTCTACATGGTGTCCTTCACTTGGAACCACGCATGCGACCTAGCTACATATATCCCG
1 GCTCTCTTGTCTACATGGTGTAC-TCAC-TAGAACCACCCATGCGACCTAGCTACATATATCCCG
22146391 TA
64 TA
* *
22146393 GCTCTCTTGTCTACATGGTGTAC-CA-TAGTATCACCCATGCGACCTAGCTACAT
1 GCTCTCTTGTCTACATGGTGTACTCACTAGAACCACCCATGCGACCTAGCTACAT
22146446 CATAATGTCT
Statistics
Matches: 101, Mismatches: 13, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
62 1 0.01
63 42 0.42
65 2 0.02
66 23 0.23
67 31 0.31
68 2 0.02
ACGTcount: A:0.22, C:0.30, G:0.17, T:0.30
Consensus pattern (65 bp):
GCTCTCTTGTCTACATGGTGTACTCACTAGAACCACCCATGCGACCTAGCTACATATATCCCGTA
Found at i:22151627 original size:27 final size:27
Alignment explanation
Indices: 22151564--22151770 Score: 251
Period size: 27 Copynumber: 7.7 Consensus size: 27
22151554 TTAGTTTACC
* *
22151564 AAATTACCAAAATA-CCCTCGATTAG-A
1 AAATTACCAAAATACCCCTAG-TTTGTA
* *
22151590 AAACTGACCAAAATACCCCTAGTTCGTA
1 AAA-TTACCAAAATACCCCTAGTTTGTA
*
22151618 AAATTTCCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
22151645 AAATTACCAAAATACCCCTAGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
22151672 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
22151699 AAATTACCAAAATACCCCT-GATTTGTA
1 AAATTACCAAAATACCCCTAG-TTTGTA
** * *
22151726 AAATTACTGAAATA-CCCTCGTCCTGTA
1 AAATTACCAAAATACCCCTAGT-TTGTA
*
22151753 AAATTACCAAAGTACCCC
1 AAATTACCAAAATACCCC
22151771 CTATTTACAG
Statistics
Matches: 159, Mismatches: 15, Indels: 12
0.85 0.08 0.06
Matches are distributed among these distances:
26 9 0.06
27 138 0.87
28 12 0.08
ACGTcount: A:0.41, C:0.25, G:0.08, T:0.27
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:22151785 original size:81 final size:80
Alignment explanation
Indices: 22151596--22151823 Score: 219
Period size: 81 Copynumber: 2.8 Consensus size: 80
22151586 TAGAAAACTG
*** * **
22151596 ACCAAAATACCCCTAGTTCGTAAAATTTCCAAAATACCCCT-AGTTTGTAAAATTACCAAAATAC
1 ACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTGA-TTTGTAAAATTACTGAAATA-
*
22151660 CCCTAGTTTATAAAATT
64 CCCTAGTCTATAAAATT
**
22151677 ACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTACTGAAATACC
1 ACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTGATTTGTAAAATTACTGAAATACC
* *
22151742 CTCGTCCTGTAAAATT
66 CTAGT-CTATAAAATT
* * *** ** *
22151758 ACCAAAGTACCCCCTA-TTTACAGAATTACCATTTTA-CCCTCGATTTACAAAATTATTGAAATA
1 ACCAAAATA-CCCCTAGTTTACAAAATTACCAAAATACCCCT-GATTTGTAAAATTACTGAAATA
22151821 CCC
64 CCC
22151824 CTATAGGGTA
Statistics
Matches: 126, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
80 10 0.08
81 109 0.87
82 7 0.06
ACGTcount: A:0.39, C:0.25, G:0.07, T:0.30
Consensus pattern (80 bp):
ACCAAAATACCCCTAGTTTACAAAATTACCAAAATACCCCTGATTTGTAAAATTACTGAAATACC
CTAGTCTATAAAATT
Found at i:22151838 original size:27 final size:27
Alignment explanation
Indices: 22151815--22151976 Score: 189
Period size: 27 Copynumber: 6.0 Consensus size: 27
22151805 CAAAATTATT
*
22151815 GAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCCTATAGGGTAGAATTACC
* *
22151842 GAAATACCCATGTAGGGTAGAATTACC
1 GAAATACCCCTATAGGGTAGAATTACC
* * * * *
22151869 GAAATACCCTTGTAAGGTAGAAATATC
1 GAAATACCCCTATAGGGTAGAATTACC
* *
22151896 AAAATACCCCTATAGGGTAGAAATACC
1 GAAATACCCCTATAGGGTAGAATTACC
22151923 GAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCCTATAGGGTAGAATTACC
* * * * *
22151950 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCCTATAGGGTAGAATTACC
22151977 ATTTTGCCCC
Statistics
Matches: 116, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 116 1.00
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.23
Consensus pattern (27 bp):
GAAATACCCCTATAGGGTAGAATTACC
Found at i:22152544 original size:22 final size:22
Alignment explanation
Indices: 22152492--22152554 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 22
22152482 GCCAATTATT
**
22152492 CTGATTATGGCTTTGCACCAAC
1 CTGATTATGGCTTTGTGCCAAC
* *
22152514 CT-ACATATGGCTTTGTGCTAAC
1 CTGA-TTATGGCTTTGTGCCAAC
*
22152536 CTGATTATGGCTGTGTGCC
1 CTGATTATGGCTTTGTGCC
22152555 GTTATTGTGG
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
21 1 0.03
22 30 0.94
23 1 0.03
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:22152580 original size:20 final size:20
Alignment explanation
Indices: 22152557--22152611 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
22152547 TGTGTGCCGT
22152557 TATTGTGGGCTTCGTATCGA
1 TATTGTGGGCTTCGTATCGA
*
22152577 TATTGTGGGCTTCGTATCGG
1 TATTGTGGGCTTCGTATCGA
22152597 TATTGTGGGCTTCGT
1 TATTGTGGGCTTCGT
22152612 GCCAATTATA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.11, C:0.15, G:0.33, T:0.42
Consensus pattern (20 bp):
TATTGTGGGCTTCGTATCGA
Found at i:22152692 original size:27 final size:27
Alignment explanation
Indices: 22152662--22152741 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 27
22152652 TTCTGTTAAT
* * *
22152662 TGGCTTTGCTACATTATCTG-ATTCTGG
1 TGGCTCTGCCACAATATCTGTA-TCTGG
22152689 TGGCTCTGCCACAATATCTGTATCTGG
1 TGGCTCTGCCACAATATCTGTATCTGG
* **
22152716 TGACTCTATCACAATATCTGT-TCTGG
1 TGGCTCTGCCACAATATCTGTATCTGG
22152742 CAACCATGCT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
26 5 0.11
27 40 0.87
28 1 0.02
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.39
Consensus pattern (27 bp):
TGGCTCTGCCACAATATCTGTATCTGG
Found at i:22152891 original size:25 final size:25
Alignment explanation
Indices: 22152863--22152922 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
22152853 TTCACATTCA
**
22152863 GATTCTGATTTTGTTTCCTGATACT
1 GATTCTGATTTTGTCACCTGATACT
* **
22152888 GATTTTGATTTTGTCACCTGATTTT
1 GATTCTGATTTTGTCACCTGATACT
22152913 GATTCTGATT
1 GATTCTGATT
22152923 CTCATTTTGA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.17, C:0.13, G:0.17, T:0.53
Consensus pattern (25 bp):
GATTCTGATTTTGTCACCTGATACT
Found at i:22158381 original size:43 final size:42
Alignment explanation
Indices: 22158324--22158425 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 42
22158314 AGTGCCAATG
* *
22158324 TCCCAGACGTGGTCTTACATGTAATCAAATATCAATGCCACTA
1 TCCCAGACGTGGTCTTACACGAAATC-AATATCAATGCCACTA
* *
22158367 TCCCAGACAG-GGTCTTACACGAAATCAATATCGATGCCAAC-G
1 TCCCAGAC-GTGGTCTTACACGAAATCAATATCAATGCC-ACTA
*
22158409 TCCCAGGCGTGGTCTTA
1 TCCCAGACGTGGTCTTA
22158426 TAAGTAAAAC
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
41 1 0.02
42 25 0.49
43 24 0.47
44 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (42 bp):
TCCCAGACGTGGTCTTACACGAAATCAATATCAATGCCACTA
Found at i:22158413 original size:42 final size:42
Alignment explanation
Indices: 22158316--22158471 Score: 147
Period size: 43 Copynumber: 3.6 Consensus size: 42
22158306 GCTCATACAG
* * * *
22158316 TGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCAA
1 TGCCAACGTCCCAGACGTGGTCTTACAAGAAATC-AATATCGA
* *
22158359 TGCC-ACTATCCCAGACAG-GGTCTTACACGAAATCAATATCGA
1 TGCCAAC-GTCCCAGAC-GTGGTCTTACAAGAAATCAATATCGA
* * *
22158401 TGCCAACGTCCCAGGCGTGGTCTTATAAGTAAAAC-ATAAGTCGA
1 TGCCAACGTCCCAGACGTGGTCTTACAAG-AAATCAAT-A-TCGA
*
22158445 TGCCAACGTCCTAGACGTGGTCTTACA
1 TGCCAACGTCCCAGACGTGGTCTTACA
22158472 TGATAACACA
Statistics
Matches: 93, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
41 1 0.01
42 30 0.32
43 33 0.35
44 29 0.31
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.24
Consensus pattern (42 bp):
TGCCAACGTCCCAGACGTGGTCTTACAAGAAATCAATATCGA
Found at i:22164581 original size:47 final size:47
Alignment explanation
Indices: 22164512--22164729 Score: 165
Period size: 47 Copynumber: 4.7 Consensus size: 47
22164502 TATAATGTCA
* *
22164512 ATGCCATGACCCAGACATGGTCTTACACTAGTTCATCCATCA-AGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCC-TCACAGTCG
*
22164559 ATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCACAT-ATCCGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCATC-C-TCA-CAGT--CG
* * * * *
22164609 ATGCCATATCCCAGACATGGT-TTACACTGGCACAT-CTCAGAG-CC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCTCACAGTCG
*
22164653 AGTG-CATGTCCCAGACAT-GTCTTACACTAGCTTACAT--TC-CGAGGCTG
1 A-TGCCATGTCCCAGACATGGTCTTACACTAGC-T-CATCCTCAC-AGTC-G
22164700 ATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC
22164730 ACACAAATGA
Statistics
Matches: 143, Mismatches: 14, Indels: 29
0.77 0.08 0.16
Matches are distributed among these distances:
43 2 0.01
44 24 0.17
45 6 0.04
46 36 0.25
47 38 0.27
48 4 0.03
49 10 0.07
50 23 0.16
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (47 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCATCCTCACAGTCG
Found at i:22164715 original size:46 final size:48
Alignment explanation
Indices: 22164512--22164729 Score: 208
Period size: 46 Copynumber: 4.7 Consensus size: 48
22164502 TATAATGTCA
* * *
22164512 ATGCCATGACCCAGACATGGTCTTACACTAG-TT-CATCCAT-CAAGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTTACAT--ATCCGAGGCG
* *
22164559 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCT-T-ACATATCCGAGGCG
* * * * *
22164609 ATGCCATATCCCAGACATGGT-TTACACTGGC--ACATCTCAGA-GCC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATATCCGAGGCG
22164653 AGTG-CATGTCCCAGACAT-GTCTTACACTAGCTTACAT-TCCGAGGCTG
1 A-TGCCATGTCCCAGACATGGTCTTACACTAGCTTACATATCCGAGGC-G
22164700 ATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 ATGCCATGTCCCAGACATGGTCTTACACTAGC
22164730 ACACAAATGA
Statistics
Matches: 145, Mismatches: 15, Indels: 23
0.79 0.08 0.13
Matches are distributed among these distances:
43 2 0.01
44 24 0.17
45 13 0.09
46 35 0.24
47 31 0.21
48 1 0.01
49 12 0.08
50 24 0.17
51 3 0.02
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATATCCGAGGCG
Found at i:22164724 original size:90 final size:94
Alignment explanation
Indices: 22164512--22164732 Score: 244
Period size: 90 Copynumber: 2.4 Consensus size: 94
22164502 TATAATGTCA
** *
22164512 ATGCCATGA-CCCAGACATGGTCTTACACTAGTTCATCCATCA-AGTC-GATGCCATGTCCCAGA
1 ATGCCAT-ATCCCAGACATGGT-TTACACTAGCACAT-C-TCAGAGCCAG-TG-CATGTCCCAGA
*
22164574 CATGGTCTTACACTAGCTCTCACATATCCGTGCCG
60 CATGGTCTTACACTAGCTCTCACATATCCGGGCCG
*
22164609 ATGCCATATCCCAGACATGGTTTACACTGGCACATCTCAGAGCCAGTGCATGTCCCAGACAT-GT
1 ATGCCATATCCCAGACATGGTTTACACTAGCACATCTCAGAGCCAGTGCATGTCCCAGACATGGT
*
22164673 CTTACACTAGCT-T-ACAT-TCCGAGGCTG
66 CTTACACTAGCTCTCACATATCCG-GGCCG
*
22164700 ATG-CATGTCCCAGACAT-GTCTTACACTAGCACA
1 ATGCCATATCCCAGACATGGT-TTACACTAGCACA
22164733 CAAATGACCC
Statistics
Matches: 111, Mismatches: 8, Indels: 17
0.82 0.06 0.12
Matches are distributed among these distances:
89 2 0.02
90 29 0.26
91 10 0.09
92 1 0.01
93 14 0.13
94 17 0.15
95 6 0.05
96 13 0.12
97 19 0.17
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (94 bp):
ATGCCATATCCCAGACATGGTTTACACTAGCACATCTCAGAGCCAGTGCATGTCCCAGACATGGT
CTTACACTAGCTCTCACATATCCGGGCCG
Found at i:22167388 original size:46 final size:45
Alignment explanation
Indices: 22167335--22167508 Score: 156
Period size: 46 Copynumber: 3.8 Consensus size: 45
22167325 TATTTGGGCA
*
22167335 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAG-G
* * * *
22167381 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CAAGG
* * * *
22167426 TATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AAGG
* * *
22167474 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTAT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
22167509 CGGCGGGTTA
Statistics
Matches: 104, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
43 4 0.04
45 3 0.03
46 63 0.61
47 27 0.26
48 4 0.04
50 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAGG
Found at i:22167493 original size:93 final size:93
Alignment explanation
Indices: 22167334--22167503 Score: 259
Period size: 93 Copynumber: 1.8 Consensus size: 93
22167324 ATATTTGGGC
* * * *
22167334 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAGCGTCCGAACTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGCCCGAACTCGTTGAGTTG
*
22167399 AGTCTGAGTTCGTGAGATGTAACTAGGT
66 AGTCCGAGTTCGTGAGATGTAACTAGGT
* * * *
22167427 ATCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAATGCCCGAGCTCGTTGAGTTG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGCCCGAACTCGTTGAGTTG
22167492 AGTCCGAGTTCG
66 AGTCCGAGTTCG
22167504 CTTATCGGCG
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGCCCGAACTCGTTGAGTTG
AGTCCGAGTTCGTGAGATGTAACTAGGT
Found at i:22170988 original size:27 final size:27
Alignment explanation
Indices: 22170956--22171031 Score: 77
Period size: 26 Copynumber: 2.9 Consensus size: 27
22170946 TTATAGGTGG
* *
22170956 AAAATTTA-TAGATTTGCCCCTGGGAGA
1 AAAATTTACT-GATATGCCCCTAGGAGA
*
22170983 AAAA-TTACTGATATGCCCCTAGGAGC
1 AAAATTTACTGATATGCCCCTAGGAGA
* *
22171009 AAAA-TTACTGATATACCACTAGG
1 AAAATTTACTGATATGCCCCTAGG
22171032 GTTAAGGTTG
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
26 38 0.88
27 5 0.12
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.26
Consensus pattern (27 bp):
AAAATTTACTGATATGCCCCTAGGAGA
Found at i:22170999 original size:26 final size:26
Alignment explanation
Indices: 22170970--22171031 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
22170960 TTTATAGATT
*
22170970 TGCCCCTGGGAGAAAAATTACTGATA
1 TGCCCCTAGGAGAAAAATTACTGATA
*
22170996 TGCCCCTAGGAGCAAAATTACTGATA
1 TGCCCCTAGGAGAAAAATTACTGATA
* *
22171022 TACCACTAGG
1 TGCCCCTAGG
22171032 GTTAAGGTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.23
Consensus pattern (26 bp):
TGCCCCTAGGAGAAAAATTACTGATA
Found at i:22175278 original size:46 final size:45
Alignment explanation
Indices: 22175220--22175394 Score: 176
Period size: 46 Copynumber: 3.8 Consensus size: 45
22175210 TATTTGGGCA
*
22175220 TCCGAACGCGTTGAGTTGAGTCCGAGTTCACTTATTGATGCTAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-TGATGCTAATG
* * *
22175266 TCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA-GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCTAA-T--G
* * *
22175311 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCTAATG
* * *
22175359 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
22175395 GGCGGGTTAC
Statistics
Matches: 107, Mismatches: 13, Indels: 19
0.77 0.09 0.14
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
45 4 0.04
46 58 0.54
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCTAATG
Found at i:22175375 original size:93 final size:93
Alignment explanation
Indices: 22175216--22175388 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
22175206 AGGATATTTG
* * * * *
22175216 GGCATCCGAACGCGTTGAGTTGAGTCCGAGTTCACTTATTGATGCTAATGTCCGAACTCGTTGAG
1 GGCATCCGAACGCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAG
*
22175281 TTGAGTCTGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
22175309 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAG
1 GGCATCCGAACGCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAG
22175374 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
22175389 CTTATGGGCG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACGCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:22185289 original size:13 final size:13
Alignment explanation
Indices: 22185271--22185295 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22185261 CTAAAAATGT
22185271 AAAAATCATCAAG
1 AAAAATCATCAAG
22185284 AAAAATCATCAA
1 AAAAATCATCAA
22185296 AATCACTTAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAAATCATCAAG
Found at i:22202233 original size:25 final size:25
Alignment explanation
Indices: 22202179--22202248 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
22202169 CGTTCTGACC
* *
22202179 CACAACTCGTGTGAGAATACTAATT
1 CACAGCTCGTGTGAGCATACTAATT
* *
22202204 TACAGCTCGTGTGAGCATA-TCGATT
1 CACAGCTCGTGTGAGCATACT-AATT
*
22202229 CACAGCTAGTGTGAGCATAC
1 CACAGCTCGTGTGAGCATAC
22202249 ATGTACAGGA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
24 1 0.03
25 36 0.97
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (25 bp):
CACAGCTCGTGTGAGCATACTAATT
Found at i:22204493 original size:23 final size:24
Alignment explanation
Indices: 22204449--22204504 Score: 66
Period size: 23 Copynumber: 2.5 Consensus size: 24
22204439 TGAGTATTTA
*
22204449 AATGTATAT-ATTTAATTGAATTG
1 AATGTATATGATTTAATTAAATTG
*
22204472 AATGTATATGATTTGA-TAAATTG
1 AATGTATATGATTTAATTAAATTG
22204495 AAT-TAT-TGAT
1 AATGTATATGAT
22204505 CATTAAATGC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 4 0.13
22 3 0.10
23 18 0.60
24 5 0.17
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.46
Consensus pattern (24 bp):
AATGTATATGATTTAATTAAATTG
Found at i:22204714 original size:23 final size:23
Alignment explanation
Indices: 22204664--22204772 Score: 116
Period size: 23 Copynumber: 4.7 Consensus size: 23
22204654 AAGATATATT
* *
22204664 AGCTCATAAGAGCTTACTGTTTTC
1 AGCTCATTAGAGCTTACCG-TTTC
*
22204688 AGCTCATTGGAGCTTACCGTTTC
1 AGCTCATTAGAGCTTACCGTTTC
* *
22204711 AGCTC-GTATGAGCTTACTG-TTC
1 AGCTCATTA-GAGCTTACCGTTTC
22204733 AGCTCGA-TAGAGCTTACCGTTTC
1 AGCTC-ATTAGAGCTTACCGTTTC
*
22204756 AGCTCAATAGAGCTTAC
1 AGCTCATTAGAGCTTAC
22204773 TGTTCATTAG
Statistics
Matches: 73, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
22 19 0.26
23 38 0.52
24 16 0.22
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (23 bp):
AGCTCATTAGAGCTTACCGTTTC
Found at i:22204749 original size:45 final size:44
Alignment explanation
Indices: 22204664--22204778 Score: 142
Period size: 45 Copynumber: 2.5 Consensus size: 44
22204654 AAGATATATT
* *
22204664 AGCTCATAAGAGCTTACTGTTTTCAGCTCATTGGAGCTTACCGTTTC
1 AGCTC-TATGAGCTTACTG--TTCAGCTCATTAGAGCTTACCGTTTC
22204711 AGCTCGTATGAGCTTACTGTTCAGCTCGA-TAGAGCTTACCGTTTC
1 AGCTC-TATGAGCTTACTGTTCAGCTC-ATTAGAGCTTACCGTTTC
*
22204756 AGCTCAATAGAGCTTACTGTTCA
1 AGCTCTAT-GAGCTTACTGTTCA
22204779 TTAGCTCAAG
Statistics
Matches: 62, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
44 2 0.03
45 42 0.68
46 1 0.02
47 17 0.27
ACGTcount: A:0.23, C:0.23, G:0.20, T:0.34
Consensus pattern (44 bp):
AGCTCTATGAGCTTACTGTTCAGCTCATTAGAGCTTACCGTTTC
Found at i:22206199 original size:51 final size:51
Alignment explanation
Indices: 22206106--22206234 Score: 123
Period size: 51 Copynumber: 2.5 Consensus size: 51
22206096 GGTTAGGTTG
* * ***
22206106 CATGTGTAGTACTAAGTGCAGGCTACTATGGGTACCCGATAGCTTCAATCA
1 CATGTGTGGTACTAAGTGCAGGCCACTATGGGTAAAAGATAGCTTCAATCA
* * * ***
22206157 CATGTGTGGTACTAAGTGCATGCCACTATGTGTAAAATATAGCTTTGGTCA
1 CATGTGTGGTACTAAGTGCAGGCCACTATGGGTAAAAGATAGCTTCAATCA
* * * *
22206208 CAAGTGTGGTACCATGTGAAGGCCACT
1 CATGTGTGGTACTAAGTGCAGGCCACT
22206235 TTGTGAATGT
Statistics
Matches: 62, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (51 bp):
CATGTGTGGTACTAAGTGCAGGCCACTATGGGTAAAAGATAGCTTCAATCA
Found at i:22207259 original size:17 final size:17
Alignment explanation
Indices: 22207237--22207272 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
22207227 TGAGGATGGC
22207237 TAATATTAGTTAAGTTA
1 TAATATTAGTTAAGTTA
22207254 TAATATTAGTTAAGTTA
1 TAATATTAGTTAAGTTA
22207271 TA
1 TA
22207273 TGTTTATGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (17 bp):
TAATATTAGTTAAGTTA
Found at i:22209888 original size:30 final size:30
Alignment explanation
Indices: 22209852--22209913 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 30
22209842 TTTTGACTTG
* *
22209852 GTTTTAATTTTTTTATTGATTTA-TTTGAAAA
1 GTTTAAATTTATTT-TTG-TTTATTTTGAAAA
22209883 GTTTAAAATTTATTTTTGTTTATTTTGAAAA
1 GTTT-AAATTTATTTTTGTTTATTTTGAAAA
22209914 CTCCGGTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
30 4 0.15
31 15 0.56
32 8 0.30
ACGTcount: A:0.31, C:0.00, G:0.10, T:0.60
Consensus pattern (30 bp):
GTTTAAATTTATTTTTGTTTATTTTGAAAA
Found at i:22215545 original size:17 final size:19
Alignment explanation
Indices: 22215509--22215546 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
22215499 TTTTAGTTAG
22215509 TATTATGAGATAAAATTAT
1 TATTATGAGATAAAATTAT
*
22215528 TATTATTAGA-AAAA-TAT
1 TATTATGAGATAAAATTAT
22215545 TA
1 TA
22215547 CTGCATGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 4 0.22
19 9 0.50
ACGTcount: A:0.50, C:0.00, G:0.08, T:0.42
Consensus pattern (19 bp):
TATTATGAGATAAAATTAT
Found at i:22217982 original size:60 final size:59
Alignment explanation
Indices: 22217906--22218035 Score: 147
Period size: 60 Copynumber: 2.2 Consensus size: 59
22217896 AACTATGTTA
* * * *
22217906 ATATGGCCAAGGCCCAATATA-TCTCGACT-TGTAATAGGGCTACGGCCCATATTGATACTG
1 ATATGGGCTAGGCCCAATATACTCT-GA-TATGTAA-AGGGCTACGGCCCAGATTAATACTG
* * *
22217966 ATATGGGCTAGGCCCAATATACTCTGATACTGTAAGGGGCTATGGCCCAGATTAATATTG
1 ATATGGGCTAGGCCCAATATACTCTGATA-TGTAAAGGGCTACGGCCCAGATTAATACTG
22218026 ATATGGGCTA
1 ATATGGGCTA
22218036 AAGCCCAGTT
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
59 1 0.02
60 51 0.85
61 8 0.13
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (59 bp):
ATATGGGCTAGGCCCAATATACTCTGATATGTAAAGGGCTACGGCCCAGATTAATACTG
Found at i:22220132 original size:24 final size:24
Alignment explanation
Indices: 22220105--22220159 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 24
22220095 AATGGGAACA
*
22220105 GGAAATATCAAATCAGCAACAAAG
1 GGAAATAGCAAATCAGCAACAAAG
** *
22220129 GGAAATAGCAAATTGGCAATAAAG
1 GGAAATAGCAAATCAGCAACAAAG
22220153 GGAAATA
1 GGAAATA
22220160 AAACCAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.53, C:0.11, G:0.22, T:0.15
Consensus pattern (24 bp):
GGAAATAGCAAATCAGCAACAAAG
Found at i:22238001 original size:27 final size:27
Alignment explanation
Indices: 22237968--22238167 Score: 197
Period size: 27 Copynumber: 7.4 Consensus size: 27
22237958 TGGATAAGTT
*
22237968 GTAGAATTACCGAAATACCCCTATAAG
1 GTAGAATTACCGAAATACCCCTGTAAG
* *
22237995 GTAGAATTACCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAAG
*** *
22238022 GTAGAATTATTAAAATAGCCCTGT-AG
1 GTAGAATTACCGAAATACCCCTGTAAG
22238048 TGTAGAATTACCGAAATACCCCTGT-AG
1 -GTAGAATTACCGAAATACCCCTGTAAG
* * *
22238075 GATAGAATTATCGAAATACCCTTGTAGG
1 G-TAGAATTACCGAAATACCCCTGTAAG
* * * *
22238103 GTAGAAATATCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAAG
* * **
22238130 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAAG
*
22238157 GTAAAATTACC
1 GTAGAATTACC
22238168 ATTTTGCCCC
Statistics
Matches: 146, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
26 2 0.01
27 142 0.97
28 2 0.01
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAAG
Found at i:22238053 original size:54 final size:54
Alignment explanation
Indices: 22237968--22238168 Score: 233
Period size: 54 Copynumber: 3.7 Consensus size: 54
22237958 TGGATAAGTT
* * * * *
22237968 GTAGAATTACCGAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTGTAGG
1 GTAGAATTATCAAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGG
* * *
22238022 GTAGAATTATTAAAATAGCCC-TGTAGTGTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTATCAAAATA-CCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGG
* * * *
22238076 ATAGAATTATCGAAATACCCTTGTAGGGTAGAAATATCAAAATACCCCTGTAGG
1 GTAGAATTATCAAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGG
* * * * *
22238130 GTAGAATTACCGAGATACCCTTGTGGGGTAAAATTACCA
1 GTAGAATTATCAAAATACCCTTGTAGGGTAGAATTACCA
22238169 TTTTGCCCCT
Statistics
Matches: 124, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
53 3 0.02
54 118 0.95
55 3 0.02
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.25
Consensus pattern (54 bp):
GTAGAATTATCAAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGG
Found at i:22238165 original size:81 final size:81
Alignment explanation
Indices: 22237968--22238168 Score: 276
Period size: 81 Copynumber: 2.5 Consensus size: 81
22237958 TGGATAAGTT
* * * *
22237968 GTAGAATTACCGAAATACCCCTATAAGGTAGAATTACCAAAATACCCCTGTAGGGTAGAATTATT
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAAATATC
* *
22238033 AAAATAGCCCTGTAGT
66 AAAATACCCCTGTAGG
* * * *
22238049 GTAGAATTACCGAAATACCCCTGTAGGATAGAATTATCGAAATACCCTTGTAGGGTAGAAATATC
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAAATATC
22238114 AAAATACCCCTGTAGG
66 AAAATACCCCTGTAGG
* * * *
22238130 GTAGAATTACCGAGATACCCTTGTGGGGTAAAATTACCA
1 GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCA
22238169 TTTTGCCCCT
Statistics
Matches: 103, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
81 103 1.00
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.25
Consensus pattern (81 bp):
GTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAGAAATATC
AAAATACCCCTGTAGG
Found at i:22245551 original size:27 final size:27
Alignment explanation
Indices: 22245517--22245716 Score: 265
Period size: 27 Copynumber: 7.4 Consensus size: 27
22245507 TGGATAAGTT
*
22245517 GTAGAATTACCGAAATACCCCTGTAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
22245544 GTAGAATTACCGAAATACCCCTATAAG
1 GTAGAATTACCGAAATACCCCTGTAGG
22245571 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
**
22245598 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
22245625 GTAGAATTACCAAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
22245652 ATAGAATTATCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * * *
22245679 GTAGAAATACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
22245706 GTAAAATTACC
1 GTAGAATTACC
22245717 ATTTTGCCCC
Statistics
Matches: 152, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 152 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:22246095 original size:8 final size:8
Alignment explanation
Indices: 22246079--22246110 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
22246069 ATGGGCCGAA
22246079 AACGGGCC
1 AACGGGCC
*
22246087 AATGGGCC
1 AACGGGCC
22246095 AACGGGCC
1 AACGGGCC
22246103 AACGGGCC
1 AACGGGCC
22246111 CACTTTGGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.25, C:0.34, G:0.38, T:0.03
Consensus pattern (8 bp):
AACGGGCC
Found at i:22246481 original size:33 final size:32
Alignment explanation
Indices: 22246431--22246494 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
22246421 CTCGCTGCAA
* *
22246431 TCTGGTGGCTTAGCCACATATATATATATCTGT
1 TCTGGTGGCCTACCCACA-ATATATATATCTGT
* *
22246464 TCTGGTGGCCTACCCACAATATCTGTATCTG
1 TCTGGTGGCCTACCCACAATATATATATCTG
22246495 GTGACTTTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.22, C:0.23, G:0.19, T:0.36
Consensus pattern (32 bp):
TCTGGTGGCCTACCCACAATATATATATCTGT
Found at i:22259778 original size:18 final size:18
Alignment explanation
Indices: 22259755--22259789 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
22259745 CCACCAATTC
22259755 TTACAACAGGATCTCAAA
1 TTACAACAGGATCTCAAA
*
22259773 TTACAACATGATCTCAA
1 TTACAACAGGATCTCAA
22259790 TGTAATTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.23, G:0.09, T:0.26
Consensus pattern (18 bp):
TTACAACAGGATCTCAAA
Found at i:22261045 original size:141 final size:145
Alignment explanation
Indices: 22260787--22261058 Score: 342
Period size: 141 Copynumber: 1.9 Consensus size: 145
22260777 AGATGCCGAG
* * *
22260787 GCCATGTCCTAGACATGGTCTTAAACTGGCTAGCACATCAAAGTCGATGCCATGTCCCAAATAGG
1 GCCATGTCCTAGACATGGTCTTAAACTGACTAGCACATCAAAGTCGACGCCATGTCCCAAACAGG
* **
22260852 TATTACACTAACTTTCATATATCAAGGCCGATGCTGTGTCCCGACAGGTCTTACAGTGGCTCTCA
66 TATTACACTAACTCTCATATATCAAGGCCGATGCCATGTCCCGACAGGTCTTACAGTGGCTCTCA
22260917 TTTATCGGTGTCGAT
131 TTTATCGGTGTCGAT
* * *
22260932 GCCATGTCCTAGACA-GGTCTTACACTGAC-A-CACATC-AAG-CTGACGCCATGTCCTAGACAG
1 GCCATGTCCTAGACATGGTCTTAAACTGACTAGCACATCAAAGTC-GACGCCATGTCCCAAACAG
* * * * *
22260992 GTCTTACACTAGCTCTC-T-TCTCAATGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTC
65 GTATTACACTAACTCTCATATATCAAGGCCGATGCCATGTCCC-GACA-GGTCTTACAGTGGCTC
22261055 TCAT
128 TCAT
22261059 AATGTGGCCA
Statistics
Matches: 110, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
139 19 0.17
140 6 0.05
141 51 0.46
142 6 0.05
143 1 0.01
144 12 0.11
145 15 0.14
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (145 bp):
GCCATGTCCTAGACATGGTCTTAAACTGACTAGCACATCAAAGTCGACGCCATGTCCCAAACAGG
TATTACACTAACTCTCATATATCAAGGCCGATGCCATGTCCCGACAGGTCTTACAGTGGCTCTCA
TTTATCGGTGTCGAT
Found at i:22261055 original size:48 final size:47
Alignment explanation
Indices: 22260779--22261095 Score: 191
Period size: 48 Copynumber: 6.7 Consensus size: 47
22260769 ATAGGGTAAG
* * * ** **
22260779 ATGCCGAGGCCATGTCCTAGACATGGTCTTAAACTGGCTAGCACATCA
1 ATGCCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTCTCTTATCA
* * * * * ** *
22260827 AAGTCGATGCCATGTCCCAAATAGGTATTACACTAACTTTCATATATCA
1 ATGCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTC-T-TATCA
* ** * *
22260876 AGGCCGATGCTGTGTCCC-GACAGGTCTTACAGTGGCTCTCATTTATCG
1 ATGCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTC--TTATCA
* * * * * *
22260924 GTGTCGATGCCATGTCCTAGACAGGTCTTACACTGACACAC--ATCA
1 ATGCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCTTATCA
* * * * *
22260969 A-GCTGACGCCATGTCCTAGACAGGTCTTACACTAGCTCTCTTCTCA
1 ATGCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCTTATCA
*
22261015 ATGCCGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTC--AT-A
1 ATGCCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTCTCTTATCA
* *
22261060 ATGTGGCCAATG-CATGTCCCAGACATGTCTTACACT
1 A--T-GCCGATGCCATGTCCCAGACAGGTCTTACACT
22261096 AGCACACATA
Statistics
Matches: 202, Mismatches: 56, Indels: 24
0.72 0.20 0.09
Matches are distributed among these distances:
44 32 0.16
45 5 0.02
46 14 0.07
47 44 0.22
48 70 0.35
49 37 0.18
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (47 bp):
ATGCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCTTATCA
Found at i:22261674 original size:20 final size:18
Alignment explanation
Indices: 22261637--22261687 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
22261627 CTATAGTAAC
22261637 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
22261654 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
22261674 TTACAACTTTACAA
1 TCACAA-TTTACAA
22261688 AATAGCACTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:22267331 original size:44 final size:47
Alignment explanation
Indices: 22267223--22267347 Score: 150
Period size: 44 Copynumber: 2.7 Consensus size: 47
22267213 AGGGTAAGAT
* **
22267223 GTCGACGCCATGTTCCAGACATGGTCTTACACTGGCTAGCACATCAAA
1 GTCGACGCCATGTCCCAGACA-GGTCTTACACTAACTAGCACATCAAA
*
22267271 GTCGATGCCATGTCCCAGACAGGTCTTACACTAAC-A-CACATC-AA
1 GTCGACGCCATGTCCCAGACAGGTCTTACACTAACTAGCACATCAAA
* *
22267315 G-CTGACGCCATGTCCCAAATAGGTCTTACACTA
1 GTC-GACGCCATGTCCCAGACAGGTCTTACACTA
22267348 GCTCTCGTCT
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
43 1 0.01
44 30 0.43
45 6 0.09
46 1 0.01
47 12 0.17
48 19 0.28
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.22
Consensus pattern (47 bp):
GTCGACGCCATGTCCCAGACAGGTCTTACACTAACTAGCACATCAAA
Found at i:22269324 original size:50 final size:49
Alignment explanation
Indices: 22269170--22269446 Score: 274
Period size: 50 Copynumber: 5.7 Consensus size: 49
22269160 TATGTGTCAA
* *
22269170 TGTAAGACTATGTCTGGGACATGGCATCGGCATCAGTATATGCGATCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCA-CAGTATATGCGAGCCAG
* * * ** *
22269220 TGTAAGACTATAT-TGGAACATGGCATCGGCATTGT-TATGTGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACAGTATATGCGAGCCAG
*
22269267 TTTAAGACCATGTCTGGGACATGGCATCGGCACCAGTATATGCGAGCCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCA-CAGTATATGCGAGCCAG
* * * * * ** * *
22269317 TGTAAGACCATGTTTAGAACATAGCATCGCCATTGTTATAT--GTGTCAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACAG-TATATGCGAGCCAG
* * * *
22269365 TGTAAGACCATGTCTGGGACATGGCATCGGCACCGATGTATGAGAGCTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCACAG-TATATGCGAGCCAG
* *
22269415 TGTAAGACCATGTCCGAGACATGGCATCGGCA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCA
22269447 TTTTACCCTT
Statistics
Matches: 184, Mismatches: 37, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
47 20 0.11
48 56 0.30
49 20 0.11
50 88 0.48
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (49 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCACAGTATATGCGAGCCAG
Found at i:22269392 original size:98 final size:98
Alignment explanation
Indices: 22269159--22269427 Score: 371
Period size: 98 Copynumber: 2.8 Consensus size: 98
22269149 TGTTATGCCG
* * * *
22269159 ATATGTGTCAATGTAAGACTATGTCTGGGACATGGCATCGGCATCAGTATATGCGATCCAGTGTA
1 ATATGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCAGTATATGCGAGCCAGTGTA
* * * * *
22269224 AGACTAT-ATTGGAACATGGCATCGGCATTGTT
66 AGACCATGTTTAGAACATAGCATCGCCATTGTT
* * * *
22269256 ATGTGAGCCAGTTTAAGACCATGTCTGGGACATGGCATCGGCACCAGTATATGCGAGCCAGTGTA
1 ATATGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCAGTATATGCGAGCCAGTGTA
22269321 AGACCATGTTTAGAACATAGCATCGCCATTGTT
66 AGACCATGTTTAGAACATAGCATCGCCATTGTT
* * *
22269354 ATATGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACC-GATGTATGAGAGCTAGTGT
1 ATATGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCAG-TATATGCGAGCCAGTGT
22269418 AAGACCATGT
65 AAGACCATGT
22269428 CCGAGACATG
Statistics
Matches: 150, Mismatches: 20, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
97 64 0.43
98 86 0.57
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.27
Consensus pattern (98 bp):
ATATGTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACCAGTATATGCGAGCCAGTGTA
AGACCATGTTTAGAACATAGCATCGCCATTGTT
Found at i:22272440 original size:8 final size:8
Alignment explanation
Indices: 22272418--22272483 Score: 123
Period size: 8 Copynumber: 8.1 Consensus size: 8
22272408 GTACAAGCAA
22272418 ATTTTGTG
1 ATTTTGTG
22272426 TATTTTGTG
1 -ATTTTGTG
22272435 ATTTTGTG
1 ATTTTGTG
22272443 ATTTTGTG
1 ATTTTGTG
22272451 ATTTTGTG
1 ATTTTGTG
22272459 ATTTTGTG
1 ATTTTGTG
22272467 ATTTTGTG
1 ATTTTGTG
22272475 ATTTTGTG
1 ATTTTGTG
22272483 A
1 A
22272484 ATTAGGGACT
Statistics
Matches: 57, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
8 49 0.86
9 8 0.14
ACGTcount: A:0.14, C:0.00, G:0.24, T:0.62
Consensus pattern (8 bp):
ATTTTGTG
Found at i:22272994 original size:42 final size:43
Alignment explanation
Indices: 22272933--22273030 Score: 110
Period size: 42 Copynumber: 2.3 Consensus size: 43
22272923 GATTTCTATT
* *
22272933 TTACGTGTAAGACCATGTCTGGGACA-TCGGCATCG-TATTTGA
1 TTACATGTAAGACCATGTCTAGGACAGT-GGCATCGATATTTGA
* * * * *
22272975 TTTCATGTAAGTCCCTGTCTAGGACAGTGGCATCGATGTTTGG
1 TTACATGTAAGACCATGTCTAGGACAGTGGCATCGATATTTGA
22273018 TTACATGTAAGAC
1 TTACATGTAAGAC
22273031 GTTGTCTGGA
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
42 28 0.62
43 17 0.38
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTAGGACAGTGGCATCGATATTTGA
Found at i:22275648 original size:14 final size:14
Alignment explanation
Indices: 22275629--22275657 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
22275619 TGCAACATAA
22275629 TTTGTAGATGAGTG
1 TTTGTAGATGAGTG
22275643 TTTGTAGATGAGTG
1 TTTGTAGATGAGTG
22275657 T
1 T
22275658 CTTAATCTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.34, T:0.45
Consensus pattern (14 bp):
TTTGTAGATGAGTG
Found at i:22279609 original size:40 final size:40
Alignment explanation
Indices: 22279565--22279787 Score: 233
Period size: 40 Copynumber: 5.6 Consensus size: 40
22279555 GCTCCTCGTT
*
22279565 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
22279605 CAAATGCCTTCGGGACTTAACCCGGACT-TAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
22279645 CAAATGCCTTCGGGAATTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
22279685 CCAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
22279724 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
22279765 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
22279788 AACATCATTC
Statistics
Matches: 155, Mismatches: 20, Indels: 16
0.81 0.10 0.08
Matches are distributed among these distances:
38 2 0.01
39 29 0.19
40 111 0.72
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:22287664 original size:79 final size:79
Alignment explanation
Indices: 22287553--22287776 Score: 249
Period size: 79 Copynumber: 2.8 Consensus size: 79
22287543 GCTACTCGTT
* *
22287553 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGAGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCG-GACTTAACCCGG
*
22287618 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
* * * *
22287633 TAAATGCCTTCGGG-CATAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGACTTAACCCGG
*
22287696 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
* * * * * *
22287711 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CATAGCCCGGATATAGTAAC-TCGCACAAATGCCTTC-GGACTTAACCC
22287774 GGA
63 GGA
22287777 CATCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
77 2 0.02
78 34 0.28
79 51 0.42
80 35 0.29
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGA
ATTAGTAACTCGCA
Found at i:22287670 original size:39 final size:39
Alignment explanation
Indices: 22287553--22287723 Score: 218
Period size: 39 Copynumber: 4.3 Consensus size: 39
22287543 GCTACTCGTT
*
22287553 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CATAGCCCGGAAT-TAGTAACTCGCA
* * * * *
22287593 CAATTGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCG-GGCATAGCCCGGAATTAGTAACTCGCA
* *
22287633 TAAATGCCTTCGGGCATAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
* *
22287672 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
22287711 CAAATGCCTTCGG
1 CAAATGCCTTCGG
22287724 ATCTTAGTCC
Statistics
Matches: 116, Mismatches: 13, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
39 72 0.62
40 41 0.35
41 3 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
Found at i:22298595 original size:17 final size:17
Alignment explanation
Indices: 22298573--22298606 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
22298563 AGTAAAGGAT
22298573 GGAGATCTGATGAGGCA
1 GGAGATCTGATGAGGCA
*
22298590 GGAGATTTGATGAGGCA
1 GGAGATCTGATGAGGCA
22298607 TTACGAGAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.09, G:0.41, T:0.21
Consensus pattern (17 bp):
GGAGATCTGATGAGGCA
Found at i:22303369 original size:32 final size:32
Alignment explanation
Indices: 22303309--22303378 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 32
22303299 CACAGCTTAC
* * *
22303309 AGCCATCAGTAGAGGTAATTTGATCGGCACAA
1 AGCCATCAGTAGAGATAATATGACCGGCACAA
** *
22303341 AGCCATCAGTAGCTATAATATGACCGGCACAC
1 AGCCATCAGTAGAGATAATATGACCGGCACAA
22303373 AGCCAT
1 AGCCAT
22303379 GGGTAAATAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.20
Consensus pattern (32 bp):
AGCCATCAGTAGAGATAATATGACCGGCACAA
Found at i:22303908 original size:27 final size:27
Alignment explanation
Indices: 22303878--22304062 Score: 146
Period size: 27 Copynumber: 6.9 Consensus size: 27
22303868 TACCCTACAA
*
22303878 GGGTATTTCTGTAATTTTACAAATTAG
1 GGGTATTTCGGTAATTTTACAAATTAG
** * *
22303905 GGGTATTTTTGTAATTTTA-AAATCCAA
1 GGGTATTTCGGTAATTTTACAAAT-TAG
* * **
22303932 GGGTATTTCGATAATTTTTCAAACCAG
1 GGGTATTTCGGTAATTTTACAAATTAG
*
22303959 TGGTATTTCGGTAATTTTAC-AATCT-G
1 GGGTATTTCGGTAATTTTACAAAT-TAG
* * *
22303985 AGTGTATTTCGGTAATTTTACAAACTAA
1 -GGGTATTTCGGTAATTTTACAAATTAG
*
22304013 GGGAATTTCGGTAATTTTAC-AA-TACG
1 GGGTATTTCGGTAATTTTACAAATTA-G
* *
22304039 AAGGTATTTCGATAATTTTACAAA
1 -GGGTATTTCGGTAATTTTACAAA
22304063 CCCGGGGTCT
Statistics
Matches: 125, Mismatches: 24, Indels: 17
0.75 0.14 0.10
Matches are distributed among these distances:
25 2 0.02
26 9 0.07
27 107 0.86
28 7 0.06
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATTAG
Found at i:22303933 original size:54 final size:54
Alignment explanation
Indices: 22303875--22304063 Score: 220
Period size: 54 Copynumber: 3.5 Consensus size: 54
22303865 TTTTACCCTA
* ** *
22303875 CAAGGGTATTTCTG-TAATTTTACAAATTAGGGGTATTTTTGTAATTTTAAAATC
1 CAAGGGTATTTC-GATAATTTTACAAACTAGGGGTATTTCGGTAATTTTACAATC
* * *
22303929 CAAGGGTATTTCGATAATTTTTCAAACCAGTGGTATTTCGGTAATTTTACAATC
1 CAAGGGTATTTCGATAATTTTACAAACTAGGGGTATTTCGGTAATTTTACAATC
** * * * *
22303983 TGAGTGTATTTCGGTAATTTTACAAACTAAGGGAATTTCGGTAATTTTACAATAC
1 CAAGGGTATTTCGATAATTTTACAAACTAGGGGTATTTCGGTAATTTTACAAT-C
*
22304038 GAA-GGTATTTCGATAATTTTACAAAC
1 CAAGGGTATTTCGATAATTTTACAAAC
22304064 CCGGGGTCTT
Statistics
Matches: 113, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
53 1 0.01
54 110 0.97
55 2 0.02
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (54 bp):
CAAGGGTATTTCGATAATTTTACAAACTAGGGGTATTTCGGTAATTTTACAATC
Found at i:22303964 original size:81 final size:81
Alignment explanation
Indices: 22303879--22304062 Score: 198
Period size: 81 Copynumber: 2.3 Consensus size: 81
22303869 ACCCTACAAG
** *
22303879 GGTATTTCTGTAATTTTACAAAT-T-AGGGGTATTTTTGTAATTTTA-AAATCCAAGGGTATTTC
1 GGTATTTC-GTAATTTTACAAATCTGA-GGGTATTTCGGTAATTTTACAAA-CCAAGGGAATTTC
* *
22303941 GATAATTTTTCAA-ACCAGT
63 GATAATTTTACAATACCA-A
* * *
22303960 GGTATTTCGGTAATTTTAC-AATCTGAGTGTATTTCGGTAATTTTACAAACTAAGGGAATTTCGG
1 GGTATTTC-GTAATTTTACAAATCTGAGGGTATTTCGGTAATTTTACAAACCAAGGGAATTTCGA
*
22304024 TAATTTTACAATACGAA
65 TAATTTTACAATACCAA
22304041 GGTATTTCGATAATTTTACAAA
1 GGTATTTCG-TAATTTTACAAA
22304063 CCCGGGGTCT
Statistics
Matches: 87, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
80 4 0.05
81 74 0.85
82 9 0.10
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (81 bp):
GGTATTTCGTAATTTTACAAATCTGAGGGTATTTCGGTAATTTTACAAACCAAGGGAATTTCGAT
AATTTTACAATACCAA
Found at i:22305756 original size:16 final size:16
Alignment explanation
Indices: 22305735--22305769 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
22305725 ATGTATCGGC
*
22305735 AAAAGCCGAAATGTCG
1 AAAAGCCGAAAAGTCG
*
22305751 AAAAGCTGAAAAGTCG
1 AAAAGCCGAAAAGTCG
22305767 AAA
1 AAA
22305770 GTTTGGCTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.51, C:0.14, G:0.23, T:0.11
Consensus pattern (16 bp):
AAAAGCCGAAAAGTCG
Found at i:22306028 original size:29 final size:28
Alignment explanation
Indices: 22305985--22306094 Score: 139
Period size: 29 Copynumber: 3.9 Consensus size: 28
22305975 CATGATTATG
* *
22305985 AATGTGACTGGGCCTAACGGGCCATATA
1 AATGTGATTGGGCCTAATGGGCCATATA
22306013 AATGTGATTTGGGCCTAATGGGCCATATA
1 AATGTGA-TTGGGCCTAATGGGCCATATA
* * *
22306042 TAGGTGATTTGGGCCTAATGGGCCATATG
1 AATGTGA-TTGGGCCTAATGGGCCATATA
* *
22306071 AATATGATTGGGCTTAATGGGCCA
1 AATGTGATTGGGCCTAATGGGCCA
22306095 GATACAGGTA
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
28 23 0.32
29 49 0.68
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.28
Consensus pattern (28 bp):
AATGTGATTGGGCCTAATGGGCCATATA
Found at i:22306065 original size:58 final size:57
Alignment explanation
Indices: 22305993--22306103 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 57
22305983 TGAATGTGAC
* * *
22305993 TGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATATAGGTGATT
1 TGGGCCTAACGGGCCATATAAATATGA-TTGGGCCTAATGGGCCAGATACAGGTGATT
* * *
22306051 TGGGCCTAATGGGCCATATGAATATGATTGGGCTTAATGGGCCAGATACAGGT
1 TGGGCCTAACGGGCCATATAAATATGATTGGGCCTAATGGGCCAGATACAGGT
22306104 ATGTGAAATT
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 23 0.49
58 24 0.51
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (57 bp):
TGGGCCTAACGGGCCATATAAATATGATTGGGCCTAATGGGCCAGATACAGGTGATT
Found at i:22309673 original size:32 final size:32
Alignment explanation
Indices: 22309623--22309685 Score: 81
Period size: 32 Copynumber: 2.0 Consensus size: 32
22309613 CACGGCTTAC
* *
22309623 AGCCATCAGTAGCGGTAATTTGATCAGCACAA
1 AGCCATCACTAGCGGTAATATGATCAGCACAA
* * *
22309655 AGCCATTACTAGCTGTAATATGATCGGCACA
1 AGCCATCACTAGCGGTAATATGATCAGCACA
22309686 CAACCATGGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (32 bp):
AGCCATCACTAGCGGTAATATGATCAGCACAA
Done.