Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 73 of 295
Found at i:22310249 original size:27 final size:27
Alignment explanation
Indices: 22310218--22310455 Score: 234
Period size: 27 Copynumber: 8.9 Consensus size: 27
22310208 TTACACTACA
*
22310218 AGGGTATTTCGATAATTTTACAAATTG
1 AGGGTATTTCGGTAATTTTACAAATTG
* ** *
22310245 GGGGTATTTTAGTAATTTTA-TAATCTG
1 AGGGTATTTCGGTAATTTTACAAAT-TG
* * *
22310272 AGGGTATTTTGGTAATTTTATAAACTG
1 AGGGTATTTCGGTAATTTTACAAATTG
* * *
22310299 AGGGTATTTTGGTAATTTTACAATTTT
1 AGGGTATTTCGGTAATTTTACAAATTG
* *
22310326 AGGGCATTTCGGTAATTTTACAAACTG
1 AGGGTATTTCGGTAATTTTACAAATTG
*
22310353 -GGGATATTTCAGTAATTTTAC-AATCTG
1 AGGG-TATTTCGGTAATTTTACAAAT-TG
* *
22310380 AAGGTATTTCGGTAATTTTACAAATTA
1 AGGGTATTTCGGTAATTTTACAAATTG
*
22310407 AGGATATTTCGGTAATTTTAC-AATCTG
1 AGGGTATTTCGGTAATTTTACAAAT-TG
* *
22310434 A-GATATTTCGATAATTTTACAA
1 AGGGTATTTCGGTAATTTTACAA
22310456 TTTGGGATCT
Statistics
Matches: 175, Mismatches: 28, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
26 29 0.17
27 139 0.79
28 7 0.04
ACGTcount: A:0.31, C:0.08, G:0.18, T:0.42
Consensus pattern (27 bp):
AGGGTATTTCGGTAATTTTACAAATTG
Found at i:22310253 original size:54 final size:53
Alignment explanation
Indices: 22310191--22310461 Score: 260
Period size: 54 Copynumber: 5.0 Consensus size: 53
22310181 TTACCCTATA
* *
22310191 GGGATATTTCAGTAATTTTACACTACAAGGGTATTTCGATAATTTTACAAATTG
1 GGGATATTTCAGTAATTTTACAAT-CAAGGGTATTTCGGTAATTTTACAAATTG
* * * * * * *
22310245 GGGGTATTTTAGTAATTTTATAATCTGAGGGTATTTTGGTAATTTTATAAACTG
1 GGGATATTTCAGTAATTTTACAATC-AAGGGTATTTCGGTAATTTTACAAATTG
** ** * *
22310299 AGGG-TATTTTGGTAATTTTACAATTTTAGGGCATTTCGGTAATTTTACAAACTG
1 -GGGATATTTCAGTAATTTTACAA-TCAAGGGTATTTCGGTAATTTTACAAATTG
*
22310353 GGGATATTTCAGTAATTTTACAATCTGAA-GGTATTTCGGTAATTTTACAAATTA
1 GGGATATTTCAGTAATTTTACAATC--AAGGGTATTTCGGTAATTTTACAAATTG
* * * * * *
22310407 AGGATATTTCGGTAATTTTACAATC-TGAGATATTTCGATAATTTTACAATTTG
1 GGGATATTTCAGTAATTTTACAATCAAG-GGTATTTCGGTAATTTTACAAATTG
22310460 GG
1 GG
22310462 ATCTTAACGA
Statistics
Matches: 178, Mismatches: 31, Indels: 17
0.79 0.14 0.08
Matches are distributed among these distances:
53 27 0.15
54 146 0.82
55 5 0.03
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (53 bp):
GGGATATTTCAGTAATTTTACAATCAAGGGTATTTCGGTAATTTTACAAATTG
Found at i:22310315 original size:81 final size:81
Alignment explanation
Indices: 22310190--22310455 Score: 286
Period size: 81 Copynumber: 3.3 Consensus size: 81
22310180 TTTACCCTAT
* * * * **
22310190 AGGGATATTTCAGTAATTTTACACTAC-AAGGGTATTTCGATAATTTTACAAATTGGGGGTATTT
1 AGGG-TATTTCGGTAATTTTACA-AACTGAGGGTATTTCGGTAATTTTACAAATTAAGGGTATTT
** *
22310254 TAGTAATTTTATAATCTG
64 CGGTAATTTTACAATCTG
* * * * * *
22310272 AGGGTATTTTGGTAATTTTATAAACTGAGGGTATTTTGGTAATTTTACAATTTTAGGGCATTTCG
1 AGGGTATTTCGGTAATTTTACAAACTGAGGGTATTTCGGTAATTTTACAAATTAAGGGTATTTCG
*
22310337 GTAATTTTACAAACTG
66 GTAATTTTACAATCTG
* * * *
22310353 -GGGATATTTCAGTAATTTTACAATCTGAAGGTATTTCGGTAATTTTACAAATTAAGGATATTTC
1 AGGG-TATTTCGGTAATTTTACAAACTGAGGGTATTTCGGTAATTTTACAAATTAAGGGTATTTC
22310417 GGTAATTTTACAATCTG
65 GGTAATTTTACAATCTG
* *
22310434 A-GATATTTCGATAATTTTACAA
1 AGGGTATTTCGGTAATTTTACAA
22310456 TTTGGGATCT
Statistics
Matches: 152, Mismatches: 29, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
80 22 0.14
81 126 0.83
82 4 0.03
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.42
Consensus pattern (81 bp):
AGGGTATTTCGGTAATTTTACAAACTGAGGGTATTTCGGTAATTTTACAAATTAAGGGTATTTCG
GTAATTTTACAATCTG
Found at i:22310767 original size:35 final size:35
Alignment explanation
Indices: 22310728--22310797 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
22310718 CCCCGAATAG
22310728 CCCAAGACCATGAGAGCGCTCATGGTGGCCTCTAC
1 CCCAAGACCATGAGAGCGCTCATGGTGGCCTCTAC
22310763 CCCAAGACCATGAGAGCGCTCATGGTGGCCTCTAC
1 CCCAAGACCATGAGAGCGCTCATGGTGGCCTCTAC
22310798 AGTCTAACAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.23, C:0.34, G:0.26, T:0.17
Consensus pattern (35 bp):
CCCAAGACCATGAGAGCGCTCATGGTGGCCTCTAC
Found at i:22316185 original size:48 final size:48
Alignment explanation
Indices: 22316115--22316246 Score: 176
Period size: 48 Copynumber: 2.8 Consensus size: 48
22316105 GTGCGAGTTA
* * * *
22316115 TACCTTGATTTAGCTTCAGGCCATGGTATAGGTA-TTTCAGAGATGAGT
1 TACCTTGATTTGGCTTCGGGCCATGGTATAGGTACTCT-AGAGATAAGT
* * * *
22316163 TGCTTTGATTTGGCTTCGGGCCATGGTATAGGTACTCTGGGGATAAGT
1 TACCTTGATTTGGCTTCGGGCCATGGTATAGGTACTCTAGAGATAAGT
22316211 TACCTTGATTTGGCTTCGGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTTCGGGCCATGGTATAGGTACT
22316247 TATCGTGTGA
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
48 71 0.97
49 2 0.03
ACGTcount: A:0.20, C:0.16, G:0.29, T:0.36
Consensus pattern (48 bp):
TACCTTGATTTGGCTTCGGGCCATGGTATAGGTACTCTAGAGATAAGT
Found at i:22325007 original size:9 final size:9
Alignment explanation
Indices: 22324993--22325018 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
22324983 GGCTTGGAAA
22324993 ATGAAATTC
1 ATGAAATTC
22325002 ATGAAATTC
1 ATGAAATTC
22325011 ATGAAATT
1 ATGAAATT
22325019 TAACCCTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.46, C:0.08, G:0.12, T:0.35
Consensus pattern (9 bp):
ATGAAATTC
Found at i:22333186 original size:20 final size:20
Alignment explanation
Indices: 22333161--22333206 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
22333151 AATAAGGATC
22333161 AGTAAAATGCATATTTACTA
1 AGTAAAATGCATATTTACTA
22333181 AGTAAAATGCATATTTACTA
1 AGTAAAATGCATATTTACTA
22333201 AGTAAA
1 AGTAAA
22333207 TGATTCCGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.48, C:0.09, G:0.11, T:0.33
Consensus pattern (20 bp):
AGTAAAATGCATATTTACTA
Found at i:22336618 original size:30 final size:30
Alignment explanation
Indices: 22336573--22336632 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
22336563 ATTTAATACG
* *
22336573 AACTTTAGCAAAATTACATTTTTTCCCCTA
1 AACTTTAGCAAAATTACACTTTTGCCCCTA
* *
22336603 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAGCAAAATTACACTTTTGCCCCTA
22336633 GCCTTGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.05, T:0.40
Consensus pattern (30 bp):
AACTTTAGCAAAATTACACTTTTGCCCCTA
Found at i:22336751 original size:13 final size:13
Alignment explanation
Indices: 22336733--22336761 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
22336723 AACATGTACT
22336733 TATGACTATTAGG
1 TATGACTATTAGG
22336746 TATGACTATTAGG
1 TATGACTATTAGG
22336759 TAT
1 TAT
22336762 TTTTACTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.41
Consensus pattern (13 bp):
TATGACTATTAGG
Found at i:22346671 original size:34 final size:34
Alignment explanation
Indices: 22346598--22346687 Score: 108
Period size: 34 Copynumber: 2.6 Consensus size: 34
22346588 CTGCATACTG
* * * **
22346598 CACTGATATGGGCTAAGGCCCAGACTGCTTTTAT
1 CACTGAAATGGGTTAAGGCCCAGACTACTACTAT
22346632 CACTGAAATGGGTTAAGGCCCAGACTACTACTAT
1 CACTGAAATGGGTTAAGGCCCAGACTACTACTAT
* *
22346666 TACTGAAAAGGGGTTAAGGCCC
1 CACTG-AAATGGGTTAAGGCCC
22346688 TAACTAAACG
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
34 33 0.69
35 15 0.31
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.24
Consensus pattern (34 bp):
CACTGAAATGGGTTAAGGCCCAGACTACTACTAT
Found at i:22351006 original size:21 final size:21
Alignment explanation
Indices: 22350967--22351006 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
22350957 AGCTTAAATG
*
22350967 ATGGTTGAATAAGTAGAATTC
1 ATGGTTGAACAAGTAGAATTC
22350988 ATGGTTG-ACAAGTATGAAT
1 ATGGTTGAACAAGTA-GAAT
22351007 CGAAATTGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.38, C:0.05, G:0.25, T:0.33
Consensus pattern (21 bp):
ATGGTTGAACAAGTAGAATTC
Found at i:22352357 original size:39 final size:39
Alignment explanation
Indices: 22352314--22352397 Score: 150
Period size: 39 Copynumber: 2.2 Consensus size: 39
22352304 TGAGGTCTGT
*
22352314 AGGCTATATGCTAGGAATATATCCGGACTTGAAGTCCGC
1 AGGCTATATGCTAGAAATATATCCGGACTTGAAGTCCGC
*
22352353 AGGCTATGTGCTAGAAATATATCCGGACTTGAAGTCCGC
1 AGGCTATATGCTAGAAATATATCCGGACTTGAAGTCCGC
22352392 AGGCTA
1 AGGCTA
22352398 CGTGCTGGAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (39 bp):
AGGCTATATGCTAGAAATATATCCGGACTTGAAGTCCGC
Found at i:22368761 original size:17 final size:19
Alignment explanation
Indices: 22368722--22368762 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
22368712 TGGGCCATTT
22368722 TGGGCCAAACTGGGCCGTG
1 TGGGCCAAACTGGGCCGTG
*
22368741 TGGGCCCAA-TGGGCC-TG
1 TGGGCCAAACTGGGCCGTG
22368758 TGGGC
1 TGGGC
22368763 TCCACTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.33
18 6 0.29
19 8 0.38
ACGTcount: A:0.12, C:0.27, G:0.44, T:0.17
Consensus pattern (19 bp):
TGGGCCAAACTGGGCCGTG
Found at i:22371394 original size:13 final size:13
Alignment explanation
Indices: 22371376--22371417 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
22371366 AGCGCGCATG
*
22371376 AAACATATCTTTA
1 AAACATATCTTAA
*
22371389 AAACATAACTTAA
1 AAACATATCTTAA
22371402 AAACATATCTTGAA
1 AAACATATCTT-AA
22371416 AA
1 AA
22371418 TAGAGTATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
13 21 0.84
14 4 0.16
ACGTcount: A:0.55, C:0.14, G:0.02, T:0.29
Consensus pattern (13 bp):
AAACATATCTTAA
Found at i:22372867 original size:20 final size:22
Alignment explanation
Indices: 22372831--22372870 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
22372821 CTTTAATAAT
22372831 CTTTTAAATTGAGTTCAAAAAC
1 CTTTTAAATTGAGTTCAAAAAC
22372853 CTTTT-AATT-AGTTCAAAA
1 CTTTTAAATTGAGTTCAAAA
22372871 TAAGTTGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.50
21 4 0.22
22 5 0.28
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.40
Consensus pattern (22 bp):
CTTTTAAATTGAGTTCAAAAAC
Found at i:22379897 original size:29 final size:27
Alignment explanation
Indices: 22379879--22379948 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
22379869 ATATTAAGTC
22379879 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
22379906 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
22379934 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
22379949 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:22379942 original size:28 final size:28
Alignment explanation
Indices: 22379879--22379976 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
22379869 ATATTAAGTC
*
22379879 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
22379906 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
22379934 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
22379963 CGCACACTTAGTGC
1 CGCACACTTAGTGC
22379977 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:22384263 original size:20 final size:22
Alignment explanation
Indices: 22384227--22384266 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
22384217 CTTTAATGAT
22384227 CTTTTAAATTGAGTTCAAAAAC
1 CTTTTAAATTGAGTTCAAAAAC
22384249 CTTTT-AATT-AGTTCAAAA
1 CTTTTAAATTGAGTTCAAAA
22384267 TAAGTTGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.50
21 4 0.22
22 5 0.28
ACGTcount: A:0.40, C:0.12, G:0.07, T:0.40
Consensus pattern (22 bp):
CTTTTAAATTGAGTTCAAAAAC
Found at i:22390786 original size:20 final size:20
Alignment explanation
Indices: 22390761--22390812 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
22390751 AAACAGGATC
*
22390761 ACACGCTCGTGTGACTTGGG
1 ACACGCCCGTGTGACTTGGG
22390781 ACACGCCCGTGTGACTTGGG
1 ACACGCCCGTGTGACTTGGG
22390801 ACACGCCCGTGT
1 ACACGCCCGTGT
22390813 CCCTAACCCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.15, C:0.31, G:0.33, T:0.21
Consensus pattern (20 bp):
ACACGCCCGTGTGACTTGGG
Found at i:22403561 original size:16 final size:17
Alignment explanation
Indices: 22403542--22403574 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
22403532 CACAGGAAAA
22403542 ATAAATAAT-GTAAGCT
1 ATAAATAATAGTAAGCT
*
22403558 ATAAATATTAGTAAGCT
1 ATAAATAATAGTAAGCT
22403575 CATATAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.48, C:0.06, G:0.12, T:0.33
Consensus pattern (17 bp):
ATAAATAATAGTAAGCT
Found at i:22413673 original size:5 final size:5
Alignment explanation
Indices: 22413663--22413699 Score: 67
Period size: 5 Copynumber: 7.6 Consensus size: 5
22413653 TTGTGTGTTC
22413663 TTTAT TTTA- TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
22413700 TCACAGTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 4 0.13
5 27 0.87
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:22414389 original size:16 final size:16
Alignment explanation
Indices: 22414336--22414390 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
22414326 AATTCTGAAT
22414336 TTTTTCCAATTTTT-TA
1 TTTTTCC-ATTTTTGTA
**
22414352 TTTTTTGGATTTTCTGTA
1 -TTTTTCCATTTT-TGTA
22414370 -TTTTCCATTTTTGTA
1 TTTTTCCATTTTTGTA
22414385 TTTTTC
1 TTTTTC
22414391 TGCTTCTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
15 4 0.13
16 19 0.61
17 6 0.19
18 2 0.06
ACGTcount: A:0.13, C:0.11, G:0.07, T:0.69
Consensus pattern (16 bp):
TTTTTCCATTTTTGTA
Found at i:22415483 original size:15 final size:16
Alignment explanation
Indices: 22415459--22415492 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
22415449 TTAAAGCTAT
*
22415459 AATGATTTTTTAA-AA
1 AATGAATTTTTAATAA
22415474 AATGAATTTTTAATAA
1 AATGAATTTTTAATAA
22415490 AAT
1 AAT
22415493 TAGGGTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (16 bp):
AATGAATTTTTAATAA
Found at i:22415615 original size:3 final size:3
Alignment explanation
Indices: 22415602--22415632 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
22415592 TATGTTTTTA
22415602 AAT AGAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
22415633 TATTATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:22415637 original size:3 final size:3
Alignment explanation
Indices: 22415631--22415669 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
22415621 AATAATAATA
22415631 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
22415670 TATAAAAACT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:22416616 original size:24 final size:24
Alignment explanation
Indices: 22416584--22416633 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
22416574 ATAATTTCTC
*
22416584 TTAGTTTTTAAATGATATATAAAT
1 TTAGTTTTTAAATAATATATAAAT
22416608 TTAGTTTTTAAATAATATATAAAT
1 TTAGTTTTTAAATAATATATAAAT
22416632 TT
1 TT
22416634 GGTCTACATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (24 bp):
TTAGTTTTTAAATAATATATAAAT
Found at i:22429717 original size:49 final size:50
Alignment explanation
Indices: 22429643--22429779 Score: 134
Period size: 49 Copynumber: 2.7 Consensus size: 50
22429633 ACATGGGTAC
** ** *
22429643 CTTACCATTGCCATGAATTTTCATGGTCTTACGTGATATCCTT-TT-GAAA
1 CTTACCATTGCCATGTCTTGACATGGTCTTACATGATATCCTTCTTAG-AA
* *
22429692 CTTACCATTGCCATGTCTTGACATGGTTTTACATGGTATCCTTGCCTTATGAA
1 CTTACCATTGCCATGTCTTGACATGGTCTTACATGATATCCTT--CTTA-GAA
* * *
22429745 CTCACCAATGCCATGTCTTGGCATGGTCTTACATG
1 CTTACCATTGCCATGTCTTGACATGGTCTTACATG
22429780 GGACCTTTGC
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
49 36 0.50
52 2 0.03
53 33 0.46
54 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.17, T:0.38
Consensus pattern (50 bp):
CTTACCATTGCCATGTCTTGACATGGTCTTACATGATATCCTTCTTAGAA
Found at i:22429770 original size:53 final size:54
Alignment explanation
Indices: 22429690--22429896 Score: 222
Period size: 53 Copynumber: 3.8 Consensus size: 54
22429680 ATCCTTTTGA
* *
22429690 AACTTACCATTGCCATGTCTTGACATGGTTTTACATGGTATCCTTGCCTTAT-G
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * *
22429743 AACTCACCAATGCCATGTCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAG
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTATAG
* * * * * * *
22429797 CAATTTATCAATGCCATGTCTTGACATGGACTTACAT-GAATTTCTTGCCTTGTAA
1 -AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTA-TCCTTGCCTTATAG
* * * *
22429852 AAATTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTT
22429897 AAACCCTAAT
Statistics
Matches: 126, Mismatches: 22, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
52 2 0.02
53 44 0.35
54 37 0.29
55 42 0.33
56 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.36
Consensus pattern (54 bp):
AACTTACCAATGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:22431562 original size:46 final size:48
Alignment explanation
Indices: 22431465--22431690 Score: 186
Period size: 46 Copynumber: 4.8 Consensus size: 48
22431455 ATATTTATGT
* * * ** * * *
22431465 GCTAGTTTAAGACCATGTCAGGGATATGGCATCGGTATTGAGACG-AGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGTGATGTA-A
*
22431513 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGTGATGTAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGTGATGTAA
* *
22431559 GCTAGTGTAAGA-CATGTCTGGGACAT-GTATCGG-CTAAGAGATGT--
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-AGTGATGTAA
* *
22431603 G-TCAGTGTAAGACCATGTCTGGGACATGGCATAGGCAC-AGAT-ATATGATA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTAG-TGATGT-A-A
*
22431653 GCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT
22431691 CAATTTCGAT
Statistics
Matches: 148, Mismatches: 16, Indels: 26
0.78 0.08 0.14
Matches are distributed among these distances:
43 1 0.01
44 10 0.07
45 16 0.11
46 61 0.41
47 13 0.09
48 12 0.08
49 1 0.01
50 33 0.22
51 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.31, T:0.26
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTAGTGATGTAA
Found at i:22431721 original size:49 final size:50
Alignment explanation
Indices: 22431603--22431729 Score: 163
Period size: 50 Copynumber: 2.6 Consensus size: 50
22431593 TAAGAGATGT
22431603 GTCAGTGTAAGACCATGTCTGGGACATGGCATAGGCACAGATATATGATA
1 GTCAGTGTAAGACCATGTCTGGGACATGGCATAGGCACAGATATATGATA
* *
22431653 G-CTAGTGTAAGACCATGTCTGGGACATGGCATTGGCCTCA-AT-T-TCGATA
1 GTC-AGTGTAAGACCATGTCTGGGACATGGCATAGG-CACAGATATAT-GATA
* *
22431702 GTCAGTGTAACACCATGTCTAGGACATG
1 GTCAGTGTAAGACCATGTCTGGGACATG
22431730 ACATCGACTT
Statistics
Matches: 69, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
48 1 0.01
49 30 0.43
50 35 0.51
51 3 0.04
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (50 bp):
GTCAGTGTAAGACCATGTCTGGGACATGGCATAGGCACAGATATATGATA
Found at i:22439696 original size:13 final size:13
Alignment explanation
Indices: 22439678--22439711 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
22439668 TTTCTTTTCC
*
22439678 TTTTCCTCTCTCT
1 TTTTCCCCTCTCT
22439691 TTTTCCCCTCTCT
1 TTTTCCCCTCTCT
22439704 TCTTTCCC
1 T-TTTCCC
22439712 TCCGACCACC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 13 0.68
14 6 0.32
ACGTcount: A:0.00, C:0.44, G:0.00, T:0.56
Consensus pattern (13 bp):
TTTTCCCCTCTCT
Found at i:22439823 original size:6 final size:6
Alignment explanation
Indices: 22439814--22439852 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
22439804 TTGCTTTCCC
* *
22439814 TTTTGT TTTTGT TTTTGT TTTTGT TTTTAT TTTTAT TTT
1 TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTTTGT TTT
22439853 CATTTTTCAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.05, C:0.00, G:0.10, T:0.85
Consensus pattern (6 bp):
TTTTGT
Found at i:22446371 original size:68 final size:66
Alignment explanation
Indices: 22446299--22446470 Score: 179
Period size: 67 Copynumber: 2.6 Consensus size: 66
22446289 CATCATGTGT
* * * *
22446299 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
22446362 TGTAG
62 TGTAG
* * *
22446367 ACAAGAGAGCTACGAGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
22446432 AG
65 AG
* * * *
22446434 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
22446471 GGTGGTACTG
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
64 24 0.26
65 3 0.03
66 18 0.20
67 33 0.36
68 13 0.14
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:22449756 original size:16 final size:16
Alignment explanation
Indices: 22449735--22449771 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
22449725 TTAAATCAAG
22449735 TTCATGAGTTTCTAAT
1 TTCATGAGTTTCTAAT
22449751 TTCATGAGTTTCTAAT
1 TTCATGAGTTTCTAAT
22449767 TTCAT
1 TTCAT
22449772 TACTTCAACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.24, C:0.14, G:0.11, T:0.51
Consensus pattern (16 bp):
TTCATGAGTTTCTAAT
Found at i:22451393 original size:46 final size:46
Alignment explanation
Indices: 22451326--22451497 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
22451316 AACCCGCCCC
*
22451326 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
* *
22451372 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * ** *
22451420 TCA-CGAACTTGGACTCAACTCAACGAGTTCGAACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
22451465 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
22451498 ATGCTCAACC
Statistics
Matches: 102, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 58 0.57
47 26 0.25
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:22451439 original size:93 final size:93
Alignment explanation
Indices: 22451331--22451501 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
22451321 GCCCCTAAGT
** *
22451331 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
22451396 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* *
22451424 GAACTTGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
22451489 CGAGTTCGGATGC
66 CGAGTTCGGATGC
22451502 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:22451956 original size:30 final size:30
Alignment explanation
Indices: 22451922--22451981 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
22451912 ATTTAATACG
22451922 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
22451952 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
22451982 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:22458311 original size:31 final size:31
Alignment explanation
Indices: 22458273--22458332 Score: 120
Period size: 31 Copynumber: 1.9 Consensus size: 31
22458263 TACATCTCAC
22458273 GAACTCGGACTCAACTCAACGAGTTCGGAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGAGT
22458304 GAACTCGGACTCAACTCAACGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
22458333 CATTTGCATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.30, C:0.27, G:0.25, T:0.18
Consensus pattern (31 bp):
GAACTCGGACTCAACTCAACGAGTTCGGAGT
Found at i:22458327 original size:78 final size:77
Alignment explanation
Indices: 22458223--22458378 Score: 219
Period size: 78 Copynumber: 2.0 Consensus size: 77
22458213 CGCATCCATA
*
22458223 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-TCA-CGAACTCGGACTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-AGTTACATCCATAAGCGAACTCGGACTC
22458285 AACTCAACGAGTTCGG
62 AACTCAACGAGTTCGG
* * *
22458301 AGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGACAGTTACATCCATAAGCGAACTCGGACTCAACT
22458366 CAACGAGTTCGG
66 CAACGAGTTCGG
22458378 A
1 A
22458379 TGCTCAACCA
Statistics
Matches: 71, Mismatches: 4, Indels: 7
0.87 0.05 0.09
Matches are distributed among these distances:
74 6 0.08
75 2 0.03
76 2 0.03
77 29 0.41
78 32 0.45
ACGTcount: A:0.29, C:0.27, G:0.22, T:0.22
Consensus pattern (77 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGACAGTTACATCCATAAGCGAACTCGGACTCAACT
CAACGAGTTCGG
Found at i:22463109 original size:29 final size:29
Alignment explanation
Indices: 22463042--22463166 Score: 153
Period size: 29 Copynumber: 4.3 Consensus size: 29
22463032 AAGTCTACAT
* * *
22463042 ACATGCATATGGCCCACTGGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
22463070 TCATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
22463099 ATATTCGTATGGCCCGTTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* * *
22463128 ACATTCATACGGCTCATTAGGCTCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
22463157 ACATTCATAT
1 ACATTCATAT
22463167 ACATGCTTTC
Statistics
Matches: 81, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
28 20 0.25
29 61 0.75
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:22480431 original size:42 final size:42
Alignment explanation
Indices: 22480317--22480479 Score: 161
Period size: 43 Copynumber: 3.8 Consensus size: 42
22480307 CAAAAAACAT
* * * *
22480317 ATACAATGCCAACGTCCCAGACATGGTCTTACATGTAATCAA
1 ATACGATGCCAACGTCCCAAACATGGTCTTACACGAAATCAA
*
22480359 ACATCGATGCC-ACTGTCCCAAACA-GAGTCTTACACGAAATCAA
1 ATA-CGATGCCAAC-GTCCCAAACATG-GTCTTACACGAAATCAA
* * * *
22480402 ATACGATGCCAATGTCCCAGACATGGTCTTACACACAAAACAGA
1 ATACGATGCCAACGTCCCAAACATGGTCTTACAC-GAAATCA-A
*
22480446 AGT-CGATGCGAACGTCCCAAACATGGTCTTACAC
1 A-TACGATGCCAACGTCCCAAACATGGTCTTACAC
22480480 AATAACACAT
Statistics
Matches: 100, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
42 30 0.30
43 39 0.39
44 30 0.30
45 1 0.01
ACGTcount: A:0.36, C:0.28, G:0.16, T:0.20
Consensus pattern (42 bp):
ATACGATGCCAACGTCCCAAACATGGTCTTACACGAAATCAA
Found at i:22487865 original size:42 final size:42
Alignment explanation
Indices: 22487760--22487888 Score: 150
Period size: 43 Copynumber: 3.0 Consensus size: 42
22487750 CAGAAAGCAT
* * * * *
22487760 ATACAATGCCAATGTCCCAGACATGGTCTTACATGTAATAAA
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACGAAATCAG
* * * *
22487802 ACATCGATGCCACTGTCCCAGATAGGGTCTTACACGAAATCAG
1 ATA-CGATGCCAATGTCCCAGACATGGTCTTACACGAAATCAG
*
22487845 ATACGATGCCAATGTCCCAGACATGGTCTTACACGCAAAACAG
1 ATACGATGCCAATGTCCCAGACATGGTCTTACACG-AAATCAG
22487888 A
1 A
22487889 AGTCGATTTC
Statistics
Matches: 71, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
42 31 0.44
43 40 0.56
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.22
Consensus pattern (42 bp):
ATACGATGCCAATGTCCCAGACATGGTCTTACACGAAATCAG
Found at i:22493578 original size:48 final size:48
Alignment explanation
Indices: 22493431--22493806 Score: 411
Period size: 48 Copynumber: 7.9 Consensus size: 48
22493421 GTTAAGATGC
* * * * *
22493431 CGATGTCATGTTCCAAACATGGTCTTACACTAGCCCCCATGTCGAGGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAAGT
* * ** *
22493479 CGATGTC-TG-TCTAAGACATGGTCTTACACTAGCTCTTATAT-AAATGT
1 CGATGCCATGTTCCAA-ACATGGTCTTACACTAGCTCACATATCGAA-GT
* * *
22493526 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTTACATATCGAAGC
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAAGT
* * * *
22493574 CGATGCCATG-TCCTAGACATAGTCTTACACTAGCTCTCATAT-AAATGT
1 CGATGCCATGTTCC-AAACATGGTCTTACACTAGCTCACATATCGAA-GT
*
22493622 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAAGT
* * *
22493670 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGGT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAAGT
* * * ** * **
22493718 CGATGCCATGTCCCAGACATGGTCTTACATTAGCTCTTATATAGATTT
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAAGT
*
22493766 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATA
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATA
22493807 ACCCTAATAT
Statistics
Matches: 278, Mismatches: 41, Indels: 18
0.82 0.12 0.05
Matches are distributed among these distances:
46 5 0.02
47 37 0.13
48 226 0.81
49 10 0.04
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (48 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAAGT
Found at i:22493624 original size:96 final size:96
Alignment explanation
Indices: 22493431--22493806 Score: 470
Period size: 96 Copynumber: 3.9 Consensus size: 96
22493421 GTTAAGATGC
* * * * *
22493431 CGATGTCATGTTCCAAACATGGTCTTACACTAGCCCCCATGTCGAGGTCGATGTC-TGT-CTAAG
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGTCGATGCCATGTCCT-AG
*
22493494 ACATGGTCTTACACTAGCTCTTATATAAATGT
65 ACATGGTCTTACACTAGCTCTCATATAAATGT
* * * *
22493526 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTTACATATCGAAGCCGATGCCATGTCCTAGA
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGTCGATGCCATGTCCTAGA
*
22493591 CATAGTCTTACACTAGCTCTCATATAAATGT
66 CATGGTCTTACACTAGCTCTCATATAAATGT
*
22493622 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGTCGATGCCATGTCCCAGA
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGTCGATGCCATGTCCTAGA
* ** *
22493687 CATGGTCTTACACTAGCTCACATATCGAGGT
66 CATGGTCTTACACTAGCTCTCATATAAATGT
* * * ** * ** *
22493718 CGATGCCATGTCCCAGACATGGTCTTACATTAGCTCTTATATAGATTTCGATGCCATGTTCC-AA
1 CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGTCGATGCCATG-TCCTAG
* *
22493782 ACATGGTCTTACACTGGCTCACATA
65 ACATGGTCTTACACTAGCTCTCATA
22493807 ACCCTAATAT
Statistics
Matches: 247, Mismatches: 31, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
95 46 0.19
96 196 0.79
97 5 0.02
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (96 bp):
CGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATATCGAGGTCGATGCCATGTCCTAGA
CATGGTCTTACACTAGCTCTCATATAAATGT
Found at i:22493690 original size:144 final size:144
Alignment explanation
Indices: 22493494--22493806 Score: 464
Period size: 144 Copynumber: 2.2 Consensus size: 144
22493484 TCTGTCTAAG
** * * *
22493494 ACATGGTCTTACACTAGCTCTTATATAAATGTCGATGCCATGTTCCAAACATGGTCTTACACTGG
1 ACATGGTCTTACACTAGCTCACATATAAAGGTCGATGCCATGTCCCAAACATGGTCTTACACTAG
* *
22493559 CTTACATATCGAAGCCGATGCCATGTCCTAGACATAGTCTTACACTAGCTCTCATATAAATGTCG
66 CTCACATATCGAAGCCGATGCCATGTCCCAGACATAGTCTTACACTAGCTCTCATATAAATGTCG
22493624 ATGCCATGTTCCAA
131 ATGCCATGTTCCAA
** *
22493638 ACATGGTCTTACACTAGCTCACATATCGAGGTCGATGCCATGTCCCAGACATGGTCTTACACTAG
1 ACATGGTCTTACACTAGCTCACATATAAAGGTCGATGCCATGTCCCAAACATGGTCTTACACTAG
* * * * * * *
22493703 CTCACATATCGAGGTCGATGCCATGTCCCAGACATGGTCTTACATTAGCTCTTATATAGATTTCG
66 CTCACATATCGAAGCCGATGCCATGTCCCAGACATAGTCTTACACTAGCTCTCATATAAATGTCG
22493768 ATGCCATGTTCCAA
131 ATGCCATGTTCCAA
*
22493782 ACATGGTCTTACACTGGCTCACATA
1 ACATGGTCTTACACTAGCTCACATA
22493807 ACCCTAATAT
Statistics
Matches: 151, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
144 151 1.00
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.30
Consensus pattern (144 bp):
ACATGGTCTTACACTAGCTCACATATAAAGGTCGATGCCATGTCCCAAACATGGTCTTACACTAG
CTCACATATCGAAGCCGATGCCATGTCCCAGACATAGTCTTACACTAGCTCTCATATAAATGTCG
ATGCCATGTTCCAA
Found at i:22497505 original size:48 final size:48
Alignment explanation
Indices: 22497426--22497519 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
22497416 AGGGAATTCT
* *
22497426 GTTGAATCCTTTATTGTTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
1 GTTGAATCCCTTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
22497474 GTTGAATCCCTTATTGGTG-GAAGTT-AGGCTGACTTAGGCGTTTTTA
1 GTTGAATCCCTTATTGGTGCG-AGTTGA-GCTGACTTAGGCGTTTTTA
22497520 AGCCAAGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 2 0.05
48 40 0.95
ACGTcount: A:0.18, C:0.14, G:0.28, T:0.40
Consensus pattern (48 bp):
GTTGAATCCCTTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
Found at i:22499992 original size:23 final size:23
Alignment explanation
Indices: 22499962--22500007 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
22499952 ATTGTTGCGA
22499962 GTTGAGCTGACTTAGGCGTTTTT
1 GTTGAGCTGACTTAGGCGTTTTT
22499985 GTTGAGCTGACTTAGGCGTTTTT
1 GTTGAGCTGACTTAGGCGTTTTT
22500008 ACGGTTGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.13, C:0.13, G:0.30, T:0.43
Consensus pattern (23 bp):
GTTGAGCTGACTTAGGCGTTTTT
Found at i:22502930 original size:23 final size:23
Alignment explanation
Indices: 22502903--22502946 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
22502893 TAACATTATT
*
22502903 AATCACTATC-ATATTTAAAATAA
1 AATCA-TATCTATATATAAAATAA
22502926 AATCATATCTATATATAAAAT
1 AATCATATCTATATATAAAAT
22502947 TCTATTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.36
Consensus pattern (23 bp):
AATCATATCTATATATAAAATAA
Found at i:22509386 original size:28 final size:28
Alignment explanation
Indices: 22509331--22509387 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
22509321 AATAGTCAAT
* * * *
22509331 TAGAATTAGTGGTGTTGGCATAGACAAC
1 TAGAACTAGTGGTATTAGCACAGACAAC
*
22509359 TAGAACTAGTGGTATTAGCACAGGCAAC
1 TAGAACTAGTGGTATTAGCACAGACAAC
22509387 T
1 T
22509388 CAGGGGATAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.26
Consensus pattern (28 bp):
TAGAACTAGTGGTATTAGCACAGACAAC
Found at i:22524149 original size:46 final size:46
Alignment explanation
Indices: 22524099--22524420 Score: 545
Period size: 46 Copynumber: 7.0 Consensus size: 46
22524089 TTTCTGCTAT
** *
22524099 GTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATATCAC
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
22524145 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
* *
22524191 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCGTACCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
*
22524237 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCGTATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
* * *
22524283 GTTTCCATGGTATCTGTCAACCATGGTCTTACACATTTCGTATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
*
22524329 ATTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
*
22524375 GTTGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCAG
1 GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
22524421 AGAGCACACT
Statistics
Matches: 262, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 262 1.00
ACGTcount: A:0.23, C:0.24, G:0.16, T:0.38
Consensus pattern (46 bp):
GTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
Found at i:22526243 original size:11 final size:11
Alignment explanation
Indices: 22526227--22526274 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
22526217 CTTTATATAC
22526227 TAATAAAATAA
1 TAATAAAATAA
*
22526238 TAATAAAATATCT
1 TAATAAAATA--A
* *
22526251 TATTAAAATAT
1 TAATAAAATAA
22526262 TAATAAAATAA
1 TAATAAAATAA
22526273 TA
1 TA
22526275 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:22527600 original size:42 final size:42
Alignment explanation
Indices: 22527489--22527600 Score: 129
Period size: 43 Copynumber: 2.6 Consensus size: 42
22527479 CACCATACCA
* **
22527489 ATGCCATATCCAGATATAGTCTTACA-TTAGATCTCATATCG
1 ATGCCATATCCAGATATGGTCTTACACAAAGATCTCATATCG
* *
22527530 ATACCAATAGTCCAGCTATGGTCTTACACAAAG-TCTCATATCG
1 ATGCC-ATA-TCCAGATATGGTCTTACACAAAGATCTCATATCG
*
22527573 ATGCCATATCCCATATATGGTCTTACAC
1 ATGCCATAT-CCAGATATGGTCTTACAC
22527601 GTAACTCAAA
Statistics
Matches: 59, Mismatches: 8, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
41 5 0.08
42 22 0.37
43 30 0.51
44 2 0.03
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCAGATATGGTCTTACACAAAGATCTCATATCG
Found at i:22531490 original size:68 final size:68
Alignment explanation
Indices: 22531395--22531523 Score: 186
Period size: 68 Copynumber: 1.9 Consensus size: 68
22531385 AGTCCATGGT
* * * * *
22531395 TAAACATGACAATATATTGTGTGAGACCATAGTTGGGCTATGGCAACATATGTAGTCCGCCAAGA
1 TAAACATGACAATATATTGTGTAAGACCATAGCTGGGCTATGACAACAAATGAAGTCCGCCAAGA
22531460 CAG
66 CAG
* * *
22531463 TAAACATGGCATTGTATTGTGTAAGACCATAGCTGGGCTATGACAACAAATGAAGTCCGCC
1 TAAACATGACAATATATTGTGTAAGACCATAGCTGGGCTATGACAACAAATGAAGTCCGCC
22531524 GAGATGATGA
Statistics
Matches: 53, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
68 53 1.00
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (68 bp):
TAAACATGACAATATATTGTGTAAGACCATAGCTGGGCTATGACAACAAATGAAGTCCGCCAAGA
CAG
Found at i:22533895 original size:25 final size:25
Alignment explanation
Indices: 22533867--22533916 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
22533857 GTTTTTAGCA
22533867 AAAGCTTATATTTTGGTGAGTGTCT
1 AAAGCTTATATTTTGGTGAGTGTCT
22533892 AAAGCTTATATTTTGGTGAGTGTCT
1 AAAGCTTATATTTTGGTGAGTGTCT
22533917 TGGAATAGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.08, G:0.24, T:0.44
Consensus pattern (25 bp):
AAAGCTTATATTTTGGTGAGTGTCT
Found at i:22537513 original size:22 final size:22
Alignment explanation
Indices: 22537479--22537525 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
22537469 TCTTTTAACA
* *
22537479 CATAAACATTCAATTATATTGG
1 CATAAACAATCAATTATATTAG
*
22537501 CATAATCAATCAATTATATTAG
1 CATAAACAATCAATTATATTAG
22537523 CAT
1 CAT
22537526 TATACATCCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.43, C:0.15, G:0.06, T:0.36
Consensus pattern (22 bp):
CATAAACAATCAATTATATTAG
Found at i:22545117 original size:46 final size:46
Alignment explanation
Indices: 22545067--22545239 Score: 208
Period size: 46 Copynumber: 3.7 Consensus size: 46
22545057 TGGTTGAGCA
*
22545067 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
22545113 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* *
22545160 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
22545206 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
22545240 GGGGCGGGTT
Statistics
Matches: 107, Mismatches: 13, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 61 0.57
47 29 0.27
48 3 0.03
50 5 0.05
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:22545223 original size:93 final size:93
Alignment explanation
Indices: 22545064--22545234 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
22545054 GGATGGTTGA
* *
22545064 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
22545129 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
22545157 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
22545222 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
22545235 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:22545501 original size:19 final size:20
Alignment explanation
Indices: 22545464--22545501 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
22545454 ATAAGGTGGT
22545464 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
22545484 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
22545502 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:22551684 original size:119 final size:120
Alignment explanation
Indices: 22551502--22551724 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
22551492 TCCTCGTTCA
*
22551502 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
22551567 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
22551622 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
22551684 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
22551725 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:22551724 original size:40 final size:40
Alignment explanation
Indices: 22551500--22551724 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
22551490 GCTCCTCGTT
* *
22551500 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
22551540 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
22551580 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
22551620 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
22551659 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
22551700 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
22551725 CATCATTCAA
Statistics
Matches: 164, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 119 0.73
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:22559503 original size:39 final size:40
Alignment explanation
Indices: 22559397--22559619 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
22559387 GCTCCTCGTT
*
22559397 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
22559437 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
22559477 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
22559516 C-AATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
22559554 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
22559595 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
22559620 CATCATTCAA
Statistics
Matches: 163, Mismatches: 13, Indels: 14
0.86 0.07 0.07
Matches are distributed among these distances:
38 34 0.21
39 40 0.25
40 76 0.47
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:22559579 original size:117 final size:119
Alignment explanation
Indices: 22559399--22559619 Score: 290
Period size: 117 Copynumber: 1.9 Consensus size: 119
22559389 TCCTCGTTCA
*
22559399 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
22559464 TTAGTAAC-TCGCACAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCAC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * **
22559517 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
22559579 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
22559620 CATCATTCAA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
116 4 0.04
117 52 0.58
118 33 0.37
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:22563716 original size:46 final size:46
Alignment explanation
Indices: 22563666--22563835 Score: 184
Period size: 46 Copynumber: 3.7 Consensus size: 46
22563656 TTGAGCATCT
*
22563666 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
* * * *
22563712 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CGTCC
* * **
22563759 GAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACACCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
* *
22563805 GAGCTCATTGAGTTGAGTCCGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
22563836 GGGGCGGGTT
Statistics
Matches: 104, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 58 0.56
47 29 0.28
48 3 0.03
50 5 0.05
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCC
Found at i:22563819 original size:93 final size:93
Alignment explanation
Indices: 22563660--22563830 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 93
22563650 GGATGGTTGA
* *** *
22563660 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCATTGAGT
22563725 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
22563753 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACACCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCATTGAGT
22563818 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
22563831 ACTTAGGGGC
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:22564092 original size:19 final size:20
Alignment explanation
Indices: 22564055--22564092 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
22564045 ATAAGGTGGT
22564055 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
22564075 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
22564093 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:22589920 original size:22 final size:22
Alignment explanation
Indices: 22589871--22589912 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
22589861 GACTAAACCA
*
22589871 AAAACCTTAGAGATCTTTTTTAC
1 AAAA-CTTAGAAATCTTTTTTAC
22589894 AAAACTTAGAAAT-TTTTTT
1 AAAACTTAGAAATCTTTTTT
22589913 CACTAAACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 8 0.44
23 4 0.22
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (22 bp):
AAAACTTAGAAATCTTTTTTAC
Found at i:22600886 original size:16 final size:16
Alignment explanation
Indices: 22600867--22600900 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
22600857 GAATTTTACT
22600867 ACTTGTTTATTTAACA
1 ACTTGTTTATTTAACA
22600883 ACTTGTTTATTTAACA
1 ACTTGTTTATTTAACA
22600899 AC
1 AC
22600901 AAGGATTCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.32, C:0.15, G:0.06, T:0.47
Consensus pattern (16 bp):
ACTTGTTTATTTAACA
Found at i:22600937 original size:45 final size:44
Alignment explanation
Indices: 22600874--22600962 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 44
22600864 ACTACTTGTT
*
22600874 TATTTAACAACTTGTTTATTTAACAACAAGGATTCATAATCTTC
1 TATTTAAAAACTTGTTTATTTAACAACAAGGATTCATAATCTTC
22600918 TATTTACAAAACTTGTTTATTTAACAACAAGGATTCATAATCTTC
1 TATTTA-AAAACTTGTTTATTTAACAACAAGGATTCATAATCTTC
22600963 CATCAAACAT
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
44 6 0.14
45 37 0.86
ACGTcount: A:0.37, C:0.16, G:0.07, T:0.40
Consensus pattern (44 bp):
TATTTAAAAACTTGTTTATTTAACAACAAGGATTCATAATCTTC
Found at i:22605951 original size:45 final size:45
Alignment explanation
Indices: 22605841--22605960 Score: 161
Period size: 45 Copynumber: 2.7 Consensus size: 45
22605831 GGAATTTAGA
22605841 AAATCCGAGCTCGTTGAGTTGGTCCGAGTTCGTGATATATGTGAG
1 AAATCCGAGCTCGTTGAGTTGGTCCGAGTTCGTGATATATGTGAG
** * * * *
22605886 AAATATGAACTTGTTTAGTTGGTCCAAGTTCGTGATATATGTGA-
1 AAATCCGAGCTCGTTGAGTTGGTCCGAGTTCGTGATATATGTGAG
*
22605930 AGCATCCGAGCTCGTTGAGTTGGTCCGAGTT
1 A-AATCCGAGCTCGTTGAGTTGGTCCGAGTT
22605961 TATTATGGAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
44 1 0.02
45 60 0.98
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.33
Consensus pattern (45 bp):
AAATCCGAGCTCGTTGAGTTGGTCCGAGTTCGTGATATATGTGAG
Found at i:22612859 original size:22 final size:23
Alignment explanation
Indices: 22612812--22612871 Score: 79
Period size: 22 Copynumber: 2.6 Consensus size: 23
22612802 GATAACAGTG
22612812 AGCTCAATTGAGCTGGAATTGGGA
1 AGCTC-ATTGAGCTGGAATTGGGA
22612836 AGCTCTATTGAGCT-GAA-TGGGA
1 AGCTC-ATTGAGCTGGAATTGGGA
22612858 AGCTCATATGAGCT
1 AGCTCAT-TGAGCT
22612872 ATGGTGAGTC
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
21 2 0.06
22 16 0.47
23 3 0.09
24 13 0.38
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.27
Consensus pattern (23 bp):
AGCTCATTGAGCTGGAATTGGGA
Found at i:22617513 original size:28 final size:28
Alignment explanation
Indices: 22617482--22617538 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
22617472 CAAGGAAGGT
22617482 AAGGACTGCAATCCAATCTTTATAACCC
1 AAGGACTGCAATCCAATCTTTATAACCC
22617510 AAGGACTGCAATCCAATCTTTATAACCC
1 AAGGACTGCAATCCAATCTTTATAACCC
22617538 A
1 A
22617539 TCATGGCAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.37, C:0.28, G:0.11, T:0.25
Consensus pattern (28 bp):
AAGGACTGCAATCCAATCTTTATAACCC
Found at i:22629816 original size:72 final size:71
Alignment explanation
Indices: 22629635--22629816 Score: 247
Period size: 72 Copynumber: 2.5 Consensus size: 71
22629625 GCATTTGAGC
* * ** * *
22629635 TACTCACGGGTCTGTACACAAAGTCAGCACCTGGACCCCAAAGCATTAACATGATATGCTCGCTC
1 TACTCAC-GGTTTATACACAAAGTCAATACCCGGACCCCAAAACATTAACATGATATGCTCGCTC
22629700 AACGAGT
65 AACGAGT
* * * *
22629707 TACTCACGAGTTTATACACAAAGTCATTACTCAGACCCCAAAACATTAACATGATATGCTTGCTC
1 TACTCACG-GTTTATACACAAAGTCAATACCCGGACCCCAAAACATTAACATGATATGCTCGCTC
22629772 AACGAGT
65 AACGAGT
22629779 TACTCACAGGTTTATACACAAAGTCAATACCCGGACCC
1 TACTCAC-GGTTTATACACAAAGTCAATACCCGGACCC
22629817 ACATATATAT
Statistics
Matches: 96, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
71 1 0.01
72 94 0.98
73 1 0.01
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (71 bp):
TACTCACGGTTTATACACAAAGTCAATACCCGGACCCCAAAACATTAACATGATATGCTCGCTCA
ACGAGT
Found at i:22633703 original size:25 final size:26
Alignment explanation
Indices: 22633671--22633723 Score: 65
Period size: 25 Copynumber: 2.0 Consensus size: 26
22633661 TTATTTCTTT
22633671 TATTTATTTTACT-TTAT-ATTATTA
1 TATTTATTTTACTATTATAATTATTA
*
22633695 TATTATATTTTTCTCATTATAATTATTA
1 TATT-TATTTTACT-ATTATAATTATTA
22633723 T
1 T
22633724 TTCTTAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 4 0.17
25 8 0.33
27 4 0.17
28 8 0.33
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (26 bp):
TATTTATTTTACTATTATAATTATTA
Found at i:22643346 original size:24 final size:26
Alignment explanation
Indices: 22643319--22643366 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
22643309 AAAATAGCGA
*
22643319 AAAGT-AAAAA-TCAAATGTAACTAT
1 AAAGTAAAAAACTCAAATGAAACTAT
22643343 AAAGTAAAAAACTCAAATGAAACT
1 AAAGTAAAAAACTCAAATGAAACT
22643367 GTACCCAGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 5 0.24
25 5 0.24
26 11 0.52
ACGTcount: A:0.60, C:0.10, G:0.08, T:0.21
Consensus pattern (26 bp):
AAAGTAAAAAACTCAAATGAAACTAT
Found at i:22647004 original size:41 final size:41
Alignment explanation
Indices: 22646947--22647028 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
22646937 TCAAAATTCA
22646947 TTTCAGTGATATATATTTCATTGGAGGGTTTAAAACTGTTG
1 TTTCAGTGATATATATTTCATTGGAGGGTTTAAAACTGTTG
**
22646988 TTTCAGTGATATATATTTCATTGGAGGGTTTGGAACTGTTG
1 TTTCAGTGATATATATTTCATTGGAGGGTTTAAAACTGTTG
22647029 CATGGATTGA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.24, C:0.07, G:0.24, T:0.44
Consensus pattern (41 bp):
TTTCAGTGATATATATTTCATTGGAGGGTTTAAAACTGTTG
Found at i:22650282 original size:68 final size:68
Alignment explanation
Indices: 22650173--22650303 Score: 199
Period size: 68 Copynumber: 1.9 Consensus size: 68
22650163 TTGGTTTATG
* * * * *
22650173 GATTTAATTACTTGTAATGTTCATTGTGTGGCATACATTAATCTTGAGTGGATGATGGACTATGT
1 GATTTAATTACTTGTAATGTTCATAGTATGGCATACATTAATCTTAAATGGAGGATGGACTATGT
22650238 ATT
66 ATT
* *
22650241 GATTTAATTACTTGTGATGTTCATAGTATGGCATACCTTAATCTTAAATGGAGGATGGACTAT
1 GATTTAATTACTTGTAATGTTCATAGTATGGCATACATTAATCTTAAATGGAGGATGGACTAT
22650304 ATATGCGTCA
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
68 56 1.00
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.40
Consensus pattern (68 bp):
GATTTAATTACTTGTAATGTTCATAGTATGGCATACATTAATCTTAAATGGAGGATGGACTATGT
ATT
Found at i:22651765 original size:46 final size:44
Alignment explanation
Indices: 22651661--22651768 Score: 144
Period size: 44 Copynumber: 2.4 Consensus size: 44
22651651 TGTCTTTGAC
** * * *
22651661 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
*
22651705 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAAT
1 ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAAT
22651751 ATGGACTTACATGGCTCA
1 ATGGACTTACATGGCTCA
22651769 TTTCTGTTCT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
44 33 0.59
46 23 0.41
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (44 bp):
ATGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAAT
Found at i:22660144 original size:28 final size:28
Alignment explanation
Indices: 22660090--22660144 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
22660080 GCATATATGT
*
22660090 GTGAAATTGAATTGTATAATGATTTGTG
1 GTGAAATTGAATTGTATAATGAATTGTG
* *
22660118 GTGAATTTGAAATTGTA-ATTGAATTGT
1 GTGAAATTG-AATTGTATAATGAATTGT
22660145 TATTGCGATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 16 0.70
29 7 0.30
ACGTcount: A:0.33, C:0.00, G:0.24, T:0.44
Consensus pattern (28 bp):
GTGAAATTGAATTGTATAATGAATTGTG
Found at i:22667525 original size:28 final size:28
Alignment explanation
Indices: 22667471--22667525 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
22667461 ATATATATGT
*
22667471 GTGAAATTGAATTGTATAATGATTTGTG
1 GTGAAATTGAATTGTATAATGAATTGTG
* *
22667499 GTGAATTTGAAATTGTA-ATTGAATTGT
1 GTGAAATTG-AATTGTATAATGAATTGT
22667526 TATTGCGATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 16 0.70
29 7 0.30
ACGTcount: A:0.33, C:0.00, G:0.24, T:0.44
Consensus pattern (28 bp):
GTGAAATTGAATTGTATAATGAATTGTG
Found at i:22671132 original size:24 final size:23
Alignment explanation
Indices: 22671078--22671133 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
22671068 TCGGAAAGAT
*
22671078 TAAG-GATTTCACGATTTGGTTC
1 TAAGAGATTTCACGATTTCGTTC
* *
22671100 TAAGGGATTTCATGATTTCGTTCC
1 TAAGAGATTTCACGATTTCGTT-C
*
22671124 TAATAGATTT
1 TAAGAGATTT
22671134 AGGGATTCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 4 0.14
23 15 0.54
24 9 0.32
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.43
Consensus pattern (23 bp):
TAAGAGATTTCACGATTTCGTTC
Found at i:22671684 original size:90 final size:88
Alignment explanation
Indices: 22671579--22671752 Score: 215
Period size: 90 Copynumber: 2.0 Consensus size: 88
22671569 ATTATTCCTT
* *
22671579 TTTTTTTGCATTCAATTGAGCACTTGAACTTTCAAAATGCA-CAAGAAAGGACTTCAAACTTCTT
1 TTTTTTTGCACTCAATTGAGCACTTGAACTTTCAAAATACATCAA-AAAGGACTTCAAACTTCTT
22671643 CAAAAAAAGCAATTAAGCCCTTGCC
65 C-AAAAAAGCAATTAAGCCCTTGCC
* * * * ** * * *
22671668 TTTTTTTGTCACTCAATTGGGTACTTGAACTTTTAAAATACATCGAAAAGTCCTTTAAATTTTTT
1 TTTTTTTG-CACTCAATTGAGCACTTGAACTTTCAAAATACATCAAAAAGGACTTCAAACTTCTT
22671733 CAAAAAAGCAATTAAGCCCT
65 CAAAAAAGCAATTAAGCCCT
22671753 ACTCTTATTA
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
89 27 0.38
90 43 0.60
91 2 0.03
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.34
Consensus pattern (88 bp):
TTTTTTTGCACTCAATTGAGCACTTGAACTTTCAAAATACATCAAAAAGGACTTCAAACTTCTTC
AAAAAAGCAATTAAGCCCTTGCC
Found at i:22671844 original size:37 final size:37
Alignment explanation
Indices: 22671757--22671845 Score: 92
Period size: 36 Copynumber: 2.4 Consensus size: 37
22671747 AGCCCTACTC
*
22671757 TTATTAAAAATTAGGA-AAAAGTAAAAAAATAGAAAAA
1 TTATTAAAAA-TAGAATAAAAGTAAAAAAATAGAAAAA
* * * ** *
22671794 TTATT-AAATTAGAATAAAATTTAAAAAATTTAAAAT
1 TTATTAAAAATAGAATAAAAGTAAAAAAATAGAAAAA
22671830 TTATTAAAAATAGAAT
1 TTATTAAAAATAGAAT
22671846 TTTTTTTATA
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
35 4 0.10
36 24 0.57
37 14 0.33
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (37 bp):
TTATTAAAAATAGAATAAAAGTAAAAAAATAGAAAAA
Found at i:22671859 original size:21 final size:21
Alignment explanation
Indices: 22671829--22671881 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
22671819 AAATTTAAAA
22671829 TTTATTAAAAATAG-AATTTTT
1 TTTA-TAAAAATAGCAATTTTT
*
22671850 TTTATAAAAATTGCAATTTTT
1 TTTATAAAAATAGCAATTTTT
*
22671871 TTAATAAAAAT
1 TTTATAAAAAT
22671882 CATAAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 8 0.28
21 21 0.72
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (21 bp):
TTTATAAAAATAGCAATTTTT
Found at i:22671929 original size:19 final size:19
Alignment explanation
Indices: 22671905--22671941 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
22671895 CGACCCTTAG
* *
22671905 TTTTTTCAGTTAAAGTCAA
1 TTTTTTCAATCAAAGTCAA
22671924 TTTTTTCAATCAAAGTCA
1 TTTTTTCAATCAAAGTCA
22671942 TCACATGTCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.14, G:0.08, T:0.46
Consensus pattern (19 bp):
TTTTTTCAATCAAAGTCAA
Found at i:22672168 original size:8 final size:8
Alignment explanation
Indices: 22672112--22672170 Score: 55
Period size: 9 Copynumber: 6.8 Consensus size: 8
22672102 GACTTTATAA
22672112 AATTTTAT
1 AATTTTAT
*
22672120 AATTCTAT
1 AATTTTAT
22672128 ATATTTTAT
1 A-ATTTTAT
22672137 ACATTTTACT
1 A-ATTTTA-T
*
22672147 ATTTTTAT
1 AATTTTAT
22672155 AAAATTTTAT
1 --AATTTTAT
22672165 AATTTT
1 AATTTT
22672171 TTTATATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
8 15 0.36
9 18 0.43
10 9 0.21
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (8 bp):
AATTTTAT
Found at i:22672182 original size:20 final size:21
Alignment explanation
Indices: 22672147--22672216 Score: 69
Period size: 20 Copynumber: 3.6 Consensus size: 21
22672137 ACATTTTACT
*
22672147 ATTTTTATA-A-AATTTTATA
1 ATTTTTATATATATTTTTATA
* *
22672166 ATTTTTTTATAT-TTTTTACA
1 ATTTTTATATATATTTTTATA
*
22672186 ATTTATATATATATTTTT-TA
1 ATTTTTATATATATTTTTATA
22672206 ATTTTTA-ATAT
1 ATTTTTATATAT
22672217 TTGAATTTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
19 12 0.29
20 24 0.59
21 5 0.12
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.64
Consensus pattern (21 bp):
ATTTTTATATATATTTTTATA
Found at i:22672183 original size:39 final size:40
Alignment explanation
Indices: 22672131--22672211 Score: 101
Period size: 39 Copynumber: 2.0 Consensus size: 40
22672121 ATTCTATATA
* *
22672131 TTTTATACATTTTACTATTTTTATA-AAATTTTATAATTT
1 TTTTATACATTTTACAATTTATATATAAATTTTATAATTT
** * *
22672170 TTTTATATTTTTTACAATTTATATATATATTTTTTAATTT
1 TTTTATACATTTTACAATTTATATATAAATTTTATAATTT
22672210 TT
1 TT
22672212 AATATTTGAA
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
39 21 0.60
40 14 0.40
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.65
Consensus pattern (40 bp):
TTTTATACATTTTACAATTTATATATAAATTTTATAATTT
Found at i:22672194 original size:29 final size:31
Alignment explanation
Indices: 22672140--22672212 Score: 91
Period size: 30 Copynumber: 2.4 Consensus size: 31
22672130 ATTTTATACA
22672140 TTTTACTATTTTTATAAAATTTTATA-AT-TT
1 TTTTA-TATTTTTATAAAATTTTATATATATT
*
22672170 TTTTATATTTTT-TACAATTTATATATATATT
1 TTTTATATTTTTATAAAATTT-TATATATATT
22672201 TTTTA-ATTTTTA
1 TTTTATATTTTTA
22672213 ATATTTGAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
28 7 0.18
29 11 0.29
30 13 0.34
31 7 0.18
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (31 bp):
TTTTATATTTTTATAAAATTTTATATATATT
Found at i:22679210 original size:46 final size:46
Alignment explanation
Indices: 22679143--22679236 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
22679133 ACTAGATTAG
22679143 TTTATTTTTTTTGAGATTAATTAATTTAATAATAATTTTCACTAAC
1 TTTATTTTTTTTGAGATTAATTAATTTAATAATAATTTTCACTAAC
22679189 TTTATTTTTTTTGAGATTAATTAATTTAATAATAATTTTCACTAAC
1 TTTATTTTTTTTGAGATTAATTAATTTAATAATAATTTTCACTAAC
22679235 TT
1 TT
22679237 AGCGATCCCT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.55
Consensus pattern (46 bp):
TTTATTTTTTTTGAGATTAATTAATTTAATAATAATTTTCACTAAC
Found at i:22681208 original size:14 final size:14
Alignment explanation
Indices: 22681162--22681201 Score: 53
Period size: 16 Copynumber: 2.7 Consensus size: 14
22681152 CTGGGTTTAG
*
22681162 AAAATTATTTAATT
1 AAAATTAATTAATT
22681176 AAGAAATTAATTAATT
1 -A-AAATTAATTAATT
22681192 AAAATTAATT
1 AAAATTAATT
22681202 TAATAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 9 0.39
15 2 0.09
16 12 0.52
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (14 bp):
AAAATTAATTAATT
Found at i:22683129 original size:27 final size:27
Alignment explanation
Indices: 22683059--22683129 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
22683049 GTGGTCCCTG
* * * *
22683059 TGTTTACTGTCCCGATGGGCTATCTCG
1 TGTTTATTGTCCCGACGGGCTATCCCA
* **
22683086 TGTTTATTATCTTGACGGGCTATCCCA
1 TGTTTATTGTCCCGACGGGCTATCCCA
22683113 TGTTTATTGTCCCGACG
1 TGTTTATTGTCCCGACG
22683130 AACTAACTAT
Statistics
Matches: 34, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.14, C:0.24, G:0.23, T:0.39
Consensus pattern (27 bp):
TGTTTATTGTCCCGACGGGCTATCCCA
Found at i:22683168 original size:14 final size:14
Alignment explanation
Indices: 22683151--22683184 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
22683141 ATGCCATAAC
*
22683151 GTCTTCTAGCTATT
1 GTCTTATAGCTATT
22683165 GTCTTATAGCTATT
1 GTCTTATAGCTATT
22683179 GTCTTA
1 GTCTTA
22683185 CACCATATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.50
Consensus pattern (14 bp):
GTCTTATAGCTATT
Found at i:22685835 original size:9 final size:9
Alignment explanation
Indices: 22685821--22685845 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
22685811 CTTTATAAGG
22685821 AACTAGACA
1 AACTAGACA
22685830 AACTAGACA
1 AACTAGACA
22685839 AACTAGA
1 AACTAGA
22685846 GGTCATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.56, C:0.20, G:0.12, T:0.12
Consensus pattern (9 bp):
AACTAGACA
Found at i:22689008 original size:20 final size:20
Alignment explanation
Indices: 22688975--22689013 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
22688965 AGCACATGTA
*
22688975 TTCATAAAAATTCAGAATTG
1 TTCATAAAAATTCACAATTG
* *
22688995 TTCATCAAATTTCACAATT
1 TTCATAAAAATTCACAATT
22689014 TTACATTTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.41, C:0.15, G:0.05, T:0.38
Consensus pattern (20 bp):
TTCATAAAAATTCACAATTG
Found at i:22692893 original size:14 final size:13
Alignment explanation
Indices: 22692862--22692906 Score: 56
Period size: 14 Copynumber: 3.5 Consensus size: 13
22692852 TGAAAATTAT
*
22692862 TTAATTGAG-AAA
1 TTAATTTAGTAAA
22692874 TTAATTTAGTAAA
1 TTAATTTAGTAAA
*
22692887 TTTAATTTATTAAA
1 -TTAATTTAGTAAA
22692901 TTAATT
1 TTAATT
22692907 GATTAAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
12 8 0.28
13 9 0.31
14 12 0.41
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (13 bp):
TTAATTTAGTAAA
Found at i:22692904 original size:13 final size:13
Alignment explanation
Indices: 22692871--22692924 Score: 63
Period size: 14 Copynumber: 4.0 Consensus size: 13
22692861 TTTAATTGAG
*
22692871 AAATTAATTTAGT
1 AAATTAATTTATT
22692884 AAATTTAATTTATT
1 AAA-TTAATTTATT
*
22692898 AAATTAATTGATT
1 AAATTAATTTATT
*
22692911 AAATAATATTTATT
1 AAATTA-ATTTATT
22692925 TTGGGTAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
13 17 0.49
14 18 0.51
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (13 bp):
AAATTAATTTATT
Found at i:22695148 original size:23 final size:23
Alignment explanation
Indices: 22695122--22695167 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
22695112 TAATTTCACT
22695122 TAGTTTTTTCTGTAACACCCTAC
1 TAGTTTTTTCTGTAACACCCTAC
22695145 TAGTTTTTTCTGTAACACCCTAC
1 TAGTTTTTTCTGTAACACCCTAC
22695168 ACCCATCCCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.26, G:0.09, T:0.43
Consensus pattern (23 bp):
TAGTTTTTTCTGTAACACCCTAC
Found at i:22697456 original size:21 final size:21
Alignment explanation
Indices: 22697432--22697471 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
22697422 TTTACCTAGT
*
22697432 ATATGAATTGAATTAAATTGA
1 ATATGAAATGAATTAAATTGA
*
22697453 ATATGAAATGGATTAAATT
1 ATATGAAATGAATTAAATT
22697472 AACGTTAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.15, T:0.38
Consensus pattern (21 bp):
ATATGAAATGAATTAAATTGA
Found at i:22697722 original size:25 final size:24
Alignment explanation
Indices: 22697679--22697730 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
22697669 ACAAACATAT
*
22697679 CTCTTTATGAGAATTCTGATATAGG
1 CTCTTTATGAGAATTCTGACAT-GG
*
22697704 CTCTTTATGAG-CTTCCTGACATGG
1 CTCTTTATGAGAATT-CTGACATGG
22697728 CTC
1 CTC
22697731 GCTTGGACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 7 0.29
25 17 0.71
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.38
Consensus pattern (24 bp):
CTCTTTATGAGAATTCTGACATGG
Found at i:22708187 original size:51 final size:47
Alignment explanation
Indices: 22708132--22708270 Score: 151
Period size: 43 Copynumber: 2.9 Consensus size: 47
22708122 AACATGTATA
22708132 CATCCATAATGAACTTGGACCTCTCAACGAGCTCGGATGTTACATGAATCG
1 CATCCATAATGAACTTGGACCTCTCAACGAGCTCGGATG-TACAT---TCG
* * *
22708183 CATCCATCATGAACTTAGACCACTCAACGAGCTCGGATG--C--TCG
1 CATCCATAATGAACTTGGACCTCTCAACGAGCTCGGATGTACATTCG
* * *
22708226 CATCCATAATAAACTCGGACCTCTCAACGAGCTCAGATGCTACAT
1 CATCCATAATGAACTTGGACCTCTCAACGAGCTCGGATG-TACAT
22708271 ACCTCATGAA
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
43 36 0.49
46 1 0.01
48 1 0.01
51 36 0.49
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.23
Consensus pattern (47 bp):
CATCCATAATGAACTTGGACCTCTCAACGAGCTCGGATGTACATTCG
Found at i:22708252 original size:43 final size:43
Alignment explanation
Indices: 22708180--22708298 Score: 125
Period size: 43 Copynumber: 2.8 Consensus size: 43
22708170 GTTACATGAA
* * * *
22708180 TCGCATCCATCATGAACTTAGACCACTCAACGAGCTCGGATGC
1 TCGCATCCATAATAAACTCAGACCACTCAACGAGCTCAGATGC
* *
22708223 TCGCATCCATAATAAACTCGGACCTCTCAACGAGCTCAGATGC
1 TCGCATCCATAATAAACTCAGACCACTCAACGAGCTCAGATGC
* * * *
22708266 T-ACATACC-TCATGAACCCAGACCACTCAACGAG
1 TCGCAT-CCATAATAAACTCAGACCACTCAACGAG
22708299 TTTGGACTTC
Statistics
Matches: 63, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
42 23 0.37
43 40 0.63
ACGTcount: A:0.31, C:0.34, G:0.16, T:0.19
Consensus pattern (43 bp):
TCGCATCCATAATAAACTCAGACCACTCAACGAGCTCAGATGC
Found at i:22716171 original size:43 final size:43
Alignment explanation
Indices: 22716101--22716185 Score: 127
Period size: 43 Copynumber: 2.0 Consensus size: 43
22716091 TACATGAATT
* *
22716101 GCATTCATCATGAACTCGAACCACTCAACGAGCTCGGATGCTC
1 GCATCCATAATGAACTCGAACCACTCAACGAGCTCGGATGCTC
*
22716144 GCATCCATAATGAACTC-AGACCTCTCAACGAGCTCGGATGCT
1 GCATCCATAATGAACTCGA-ACCACTCAACGAGCTCGGATGCT
22716186 ACATACCTCA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 1 0.03
43 37 0.97
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.21
Consensus pattern (43 bp):
GCATCCATAATGAACTCGAACCACTCAACGAGCTCGGATGCTC
Found at i:22718235 original size:39 final size:38
Alignment explanation
Indices: 22718176--22718254 Score: 113
Period size: 39 Copynumber: 2.1 Consensus size: 38
22718166 CCCCACTCGT
* * *
22718176 TTCAGAATTTGGTACGGCCTAATAAATAGAGGGCTCAAC
1 TTCAGAATCTGGTACAGCCTAAT-AACAGAGGGCTCAAC
*
22718215 TTCAGAATCTGGTACAGCCTAATAACCGAGGGCTCAAC
1 TTCAGAATCTGGTACAGCCTAATAACAGAGGGCTCAAC
22718253 TT
1 TT
22718255 GCCCTTGCGC
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
38 15 0.42
39 21 0.58
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.25
Consensus pattern (38 bp):
TTCAGAATCTGGTACAGCCTAATAACAGAGGGCTCAAC
Found at i:22726508 original size:26 final size:26
Alignment explanation
Indices: 22726477--22726530 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
22726467 ATGAAAGGAG
* * *
22726477 ATAGAATTTCAGGTCGGAGACAAGGT
1 ATAGAATTTCAAGTCAGACACAAGGT
22726503 ATAGAATTTCAAGTCAGACACAAGGT
1 ATAGAATTTCAAGTCAGACACAAGGT
22726529 AT
1 AT
22726531 TCTTGAAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.39, C:0.13, G:0.24, T:0.24
Consensus pattern (26 bp):
ATAGAATTTCAAGTCAGACACAAGGT
Found at i:22727856 original size:21 final size:21
Alignment explanation
Indices: 22727832--22727871 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
22727822 TCCTAGGATG
*
22727832 TGAATTGAATTAAATTGAATA
1 TGAAATGAATTAAATTGAATA
*
22727853 TGAAATGGATTAAATTGAA
1 TGAAATGAATTAAATTGAA
22727872 GTTAAATGCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.17, T:0.35
Consensus pattern (21 bp):
TGAAATGAATTAAATTGAATA
Found at i:22728058 original size:30 final size:30
Alignment explanation
Indices: 22728023--22728090 Score: 136
Period size: 30 Copynumber: 2.3 Consensus size: 30
22728013 TAAATTGAAT
22728023 AATATGTATGTGAATTATATCTTTTTCATG
1 AATATGTATGTGAATTATATCTTTTTCATG
22728053 AATATGTATGTGAATTATATCTTTTTCATG
1 AATATGTATGTGAATTATATCTTTTTCATG
22728083 AATATGTA
1 AATATGTA
22728091 ATAAATCTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.32, C:0.06, G:0.13, T:0.49
Consensus pattern (30 bp):
AATATGTATGTGAATTATATCTTTTTCATG
Found at i:22728105 original size:31 final size:30
Alignment explanation
Indices: 22728023--22728105 Score: 105
Period size: 30 Copynumber: 2.7 Consensus size: 30
22728013 TAAATTGAAT
* *
22728023 AATATGTATGTGAATTATATCTTTTTCATG
1 AATATGTATATAAATTATATCTTTTTCATG
* *
22728053 AATATGTATGTGAATTATATCTTTTTCATG
1 AATATGTATATAAATTATATCTTTTTCATG
22728083 AATATGTA-ATAAATCTTATATCT
1 AATATGTATATAAA--TTATATCT
22728106 GAAAAATCTT
Statistics
Matches: 49, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
29 3 0.06
30 38 0.78
31 8 0.16
ACGTcount: A:0.34, C:0.07, G:0.11, T:0.48
Consensus pattern (30 bp):
AATATGTATATAAATTATATCTTTTTCATG
Found at i:22734183 original size:43 final size:44
Alignment explanation
Indices: 22734127--22734243 Score: 130
Period size: 44 Copynumber: 2.7 Consensus size: 44
22734117 AACATAGACA
* *
22734127 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATCAAACATT-G
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAAACAAA-ATTCG
* * * * * * *
22734170 ATGTCGATGTCCCAAACATGGTGTTACACGTAAAACAGAATTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAAACAAAATTCG
22734214 ATGCCAACGTCCCAGACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG
22734244 AAATCACATA
Statistics
Matches: 57, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
43 27 0.47
44 30 0.53
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.24
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAAACAAAATTCG
Found at i:22741316 original size:23 final size:23
Alignment explanation
Indices: 22741290--22741336 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
22741280 CACACAAAGT
22741290 AAGTTTCAAAAGCTTAGTAAGCC
1 AAGTTTCAAAAGCTTAGTAAGCC
22741313 AAGTTTCAAAAGCTTAGTAAGCC
1 AAGTTTCAAAAGCTTAGTAAGCC
22741336 A
1 A
22741337 TAAACAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (23 bp):
AAGTTTCAAAAGCTTAGTAAGCC
Found at i:22750375 original size:25 final size:25
Alignment explanation
Indices: 22750346--22750414 Score: 65
Period size: 25 Copynumber: 2.8 Consensus size: 25
22750336 CTACTCTTTC
*
22750346 GAGCTATGAACAGTAAGCTCCTCTT
1 GAGCTATGAACAGTAAGCTCCTATT
*
22750371 GAGCTGAT-AGACAATAAGCT-CTATT
1 GAGCT-ATGA-ACAGTAAGCTCCTATT
22750396 GAGC--TGAAACAGTAAGCTC
1 GAGCTATG-AACAGTAAGCTC
22750415 TGACAAGCTA
Statistics
Matches: 36, Mismatches: 3, Indels: 11
0.72 0.06 0.22
Matches are distributed among these distances:
22 1 0.03
23 9 0.25
24 1 0.03
25 14 0.39
26 11 0.31
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.25
Consensus pattern (25 bp):
GAGCTATGAACAGTAAGCTCCTATT
Found at i:22750411 original size:23 final size:24
Alignment explanation
Indices: 22750339--22750472 Score: 84
Period size: 23 Copynumber: 5.6 Consensus size: 24
22750329 TCATTTTCTA
*
22750339 CTCTTTCGAGCT-ATGAACAGTAAG
1 CTCTATCGAGCTGA-GAACAGTAAG
* * * *
22750363 CTCCTCTTGAGCTGATAGACAATAAG
1 CT-CTATCGAGCTGAGA-ACAGTAAG
*
22750389 CTCTATTGAGCTGA-AACAGTAAG
1 CTCTATCGAGCTGAGAACAGTAAG
*
22750412 CTCTGA-CAAGCT-A-AATCAGTAAG
1 CTCT-ATCGAGCTGAGAA-CAGTAAG
*
22750435 CTC-ATACGAGCTGAGAATAGTAAG
1 CTCTAT-CGAGCTGAGAACAGTAAG
22750459 CTCT-TACGAGCTGA
1 CTCTAT-CGAGCTGA
22750473 TATATAGGTA
Statistics
Matches: 90, Mismatches: 10, Indels: 20
0.75 0.08 0.17
Matches are distributed among these distances:
21 1 0.01
22 3 0.03
23 30 0.33
24 24 0.27
25 22 0.24
26 10 0.11
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (24 bp):
CTCTATCGAGCTGAGAACAGTAAG
Found at i:22750460 original size:24 final size:23
Alignment explanation
Indices: 22750396--22750497 Score: 100
Period size: 24 Copynumber: 4.3 Consensus size: 23
22750386 AAGCTCTATT
*
22750396 GAGCTGAAACAGTAAGCTC-TGAC
1 GAGCTGAAATAGTAAGCTCAT-AC
*
22750419 AAGCT-AAATCAGTAAGCTCATAC
1 GAGCTGAAAT-AGTAAGCTCATAC
*
22750442 GAGCTGAGAATAGTAAGCTCTTAC
1 GAGCTGA-AATAGTAAGCTCATAC
*
22750466 GAGCTGATATATAGGTAAGCTCATAT
1 GAGCTGA-A-ATA-GTAAGCTCATAC
22750492 GAGCTG
1 GAGCTG
22750498 CGGTGAGTTC
Statistics
Matches: 66, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
22 3 0.05
23 19 0.29
24 22 0.33
25 6 0.09
26 16 0.24
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.24
Consensus pattern (23 bp):
GAGCTGAAATAGTAAGCTCATAC
Found at i:22754790 original size:48 final size:48
Alignment explanation
Indices: 22754636--22754783 Score: 242
Period size: 48 Copynumber: 3.1 Consensus size: 48
22754626 ATATATACAC
* **
22754636 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
**
22754684 GGCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
*
22754732 ATCTCATACATATTTTACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
22754780 ATCT
1 ATCT
22754784 TGTACATCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 92 1.00
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.38
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Found at i:22756027 original size:23 final size:23
Alignment explanation
Indices: 22755995--22756038 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
22755985 AAAATTTCAC
* *
22755995 ACATGTAATTTCACATATAATAG
1 ACATGAAATTTAACATATAATAG
*
22756018 ACATGAAATTTAACATTTAAT
1 ACATGAAATTTAACATATAAT
22756039 TATTTTTGCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.36
Consensus pattern (23 bp):
ACATGAAATTTAACATATAATAG
Found at i:22757624 original size:38 final size:40
Alignment explanation
Indices: 22757481--22757703 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
22757471 GCTACTCGTT
* *
22757481 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
22757521 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
22757561 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
22757600 CAAATGCCTTC-GG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
22757638 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
22757679 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
22757704 CATCATTCAA
Statistics
Matches: 163, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 40 0.25
39 35 0.21
40 75 0.46
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:22757663 original size:117 final size:120
Alignment explanation
Indices: 22757481--22757703 Score: 287
Period size: 117 Copynumber: 1.9 Consensus size: 120
22757471 GCTACTCGTT
* *
22757481 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
22757546 ATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * **
22757600 CAAATGCCTTC-GG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* *
22757661 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
22757704 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
116 4 0.04
117 54 0.60
118 21 0.23
119 11 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:22765561 original size:79 final size:82
Alignment explanation
Indices: 22765450--22765634 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
22765440 GCTACTCGTT
* *
22765450 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
22765513 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
22765530 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
22765593 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
22765610 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
22765635 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:22765634 original size:40 final size:40
Alignment explanation
Indices: 22765431--22765634 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
22765421 CGGAATTTAA
** *
22765431 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
22765471 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
22765511 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
22765550 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
22765590 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
22765630 CCGGA
1 CCGGA
22765635 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:22768165 original size:40 final size:39
Alignment explanation
Indices: 22768066--22768182 Score: 175
Period size: 40 Copynumber: 3.0 Consensus size: 39
22768056 GGATTTTGTC
* * *
22768066 CCAGCACGAATGCT-TTGGGGCTTAGCCCGGATACATCA
1 CCAGCACGAATGCTCTTGGGACTTAGCCCGGATATAACA
22768104 -CAGCACGAATGCCTCTTGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATG-CTCTTGGGACTTAGCCCGGATATAACA
22768143 CCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATAACA
1 CCAGCACGAATGCTCTT-GGGACTTAGCCCGGATATAACA
22768183 TACTGAACTT
Statistics
Matches: 72, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
37 11 0.15
38 2 0.03
39 26 0.36
40 33 0.46
ACGTcount: A:0.26, C:0.29, G:0.24, T:0.21
Consensus pattern (39 bp):
CCAGCACGAATGCTCTTGGGACTTAGCCCGGATATAACA
Found at i:22770239 original size:48 final size:48
Alignment explanation
Indices: 22770085--22770232 Score: 233
Period size: 48 Copynumber: 3.1 Consensus size: 48
22770075 ATCTATACAC
* **
22770085 ATCTCATACATATTTCACATTAGCCATTTGGCTTTACCACATATGCAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
**
22770133 GGCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
* *
22770181 ATCTCATACATATTTTACATTAGCTATTCGGCTTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
22770229 ATCT
1 ATCT
22770233 TGTACATCAA
Statistics
Matches: 91, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 91 1.00
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.39
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATATAT
Done.