Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 74 of 295
Found at i:22770509 original size:23 final size:23
Alignment explanation
Indices: 22770477--22770520 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
22770467 AAAATTTCAC
* *
22770477 ACATGTAATTTCACATATAATAG
1 ACATGAAATTTAACATATAATAG
*
22770500 ACATGAAATTTAACATTTAAT
1 ACATGAAATTTAACATATAAT
22770521 TATTTTTGCG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.45, C:0.11, G:0.07, T:0.36
Consensus pattern (23 bp):
ACATGAAATTTAACATATAATAG
Found at i:22787955 original size:60 final size:60
Alignment explanation
Indices: 22787837--22787988 Score: 232
Period size: 60 Copynumber: 2.5 Consensus size: 60
22787827 TAGCCAAAAA
* * * *
22787837 GGCTGACATGTAACAAAGAACAACCAAAAAGGCTTCCACATATAATAGGTTCTGCCACTAG
1 GGCTCACATGTAACAAAGAACAACCACAAA-GCTTCCACATACAACAGGTTCTGCCACTAG
* * *
22787898 GGCTCACATGTAATAAAGAACAACCACAAAGCTTCCATATACAGCAGGTTCTGCCACTAG
1 GGCTCACATGTAACAAAGAACAACCACAAAGCTTCCACATACAACAGGTTCTGCCACTAG
22787958 GGCTCACATGTAACAAAGAACAACCACAAAG
1 GGCTCACATGTAACAAAGAACAACCACAAAG
22787989 GCATCACTTT
Statistics
Matches: 83, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
60 56 0.67
61 27 0.33
ACGTcount: A:0.40, C:0.25, G:0.17, T:0.18
Consensus pattern (60 bp):
GGCTCACATGTAACAAAGAACAACCACAAAGCTTCCACATACAACAGGTTCTGCCACTAG
Found at i:22795697 original size:40 final size:41
Alignment explanation
Indices: 22795642--22795764 Score: 117
Period size: 45 Copynumber: 2.9 Consensus size: 41
22795632 TAAGCCAATT
*
22795642 ATGAGTAAGGCCATAGCAGAAAGATGTTATGACATCAT-AA
1 ATGAGTAAGACCATAGCAGAAAGATGTTATGACATCATAAA
*
22795682 ATGAGTAAGACCATAGCTA-AAATACT-TTATGACATCATGATAGAA
1 ATGAGTAAGACCATAGC-AGAAAGA-TGTTATGACATC---ATA-AA
* * * *
22795727 ATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCAT
1 ATGAGTAAGACCATAGCAGAAAGATGTTATGACATCAT
22795765 GTGAAAGCAC
Statistics
Matches: 67, Mismatches: 7, Indels: 16
0.74 0.08 0.18
Matches are distributed among these distances:
40 30 0.45
41 2 0.03
42 2 0.03
43 2 0.03
45 31 0.46
ACGTcount: A:0.41, C:0.15, G:0.20, T:0.24
Consensus pattern (41 bp):
ATGAGTAAGACCATAGCAGAAAGATGTTATGACATCATAAA
Found at i:22795763 original size:45 final size:45
Alignment explanation
Indices: 22795680--22795765 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 45
22795670 ATGACATCAT
* **
22795680 AAATGAGTAAGACCATAGCTAAAATACTTTATGACATCATGATAG
1 AAATGAGTAAGACCATAGCTAAAAGACGCTATGACATCATGATAG
* *
22795725 AAATGAGTAAGACCATAGCTGAAAGACGCTATGGCATCATG
1 AAATGAGTAAGACCATAGCTAAAAGACGCTATGACATCATG
22795766 TGAAAGCACG
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.42, C:0.15, G:0.20, T:0.23
Consensus pattern (45 bp):
AAATGAGTAAGACCATAGCTAAAAGACGCTATGACATCATGATAG
Found at i:22795891 original size:27 final size:27
Alignment explanation
Indices: 22795843--22795895 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
22795833 AAGCCCATCG
* *
22795843 AGACACTAAACACAGGACAGTCCACCA
1 AGACACTAAACACAGAAAAGTCCACCA
22795870 AGACACTAAACAC-GAAAAAGTCCACC
1 AGACACTAAACACAG-AAAAGTCCACC
22795896 GGGATACTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.47, C:0.32, G:0.13, T:0.08
Consensus pattern (27 bp):
AGACACTAAACACAGAAAAGTCCACCA
Found at i:22795992 original size:27 final size:25
Alignment explanation
Indices: 22795962--22796021 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 25
22795952 GACACTCTAT
*
22795962 ATGGGGAACTCTGCTGGGACACTAAAC
1 ATGGGGAA-TCAGCTGGGACACT-AAC
**
22795989 ATGGGGTAATCAGCTGGGACTGTAAC
1 ATGGGG-AATCAGCTGGGACACTAAC
22796015 ATGGGGA
1 ATGGGGA
22796022 GTTTGCCAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 1 0.03
26 9 0.31
27 17 0.59
28 2 0.07
ACGTcount: A:0.28, C:0.17, G:0.35, T:0.20
Consensus pattern (25 bp):
ATGGGGAATCAGCTGGGACACTAAC
Found at i:22802715 original size:46 final size:44
Alignment explanation
Indices: 22802641--22802847 Score: 154
Period size: 46 Copynumber: 4.6 Consensus size: 44
22802631 GTCGATGCTG
* *
22802641 TGTCCCAGATAGGTCTTACACT-GACACATGTAACCGTGGCGATGCA
1 TGTCCCAGACATGTCTTACACTAG-CACA--TAACCGTGGCGATGCA
* ** *
22802687 TGTCCCAGACATGTCTTACACTAGCACAT-ATCGTACCCGACGCA
1 TGTCCCAGACATGTCTTACACTAGCACATAACCGT-GGCGATGCA
* * *
22802731 TGTCCCAGACATGTCTGACACTGGCTA-A-AATCTCGAGGCCGATGCA
1 TGTCCCAGACATGTCTTACACTAGC-ACATAA-C-CGTGG-CGATGCA
* * * *
22802777 TGTCCCAAACATGTCTTACACTGGCTC-TCATACTGTGGCTGATGCA
1 TGTCCCAGACATGTCTTACACTAGCACAT-A-ACCGTGGC-GATGCA
*
22802823 TGTCCTAGACATGTCTTACACTAGC
1 TGTCCCAGACATGTCTTACACTAGC
22802848 CCTCGTCTCA
Statistics
Matches: 128, Mismatches: 21, Indels: 24
0.74 0.12 0.14
Matches are distributed among these distances:
43 4 0.03
44 32 0.25
45 2 0.02
46 86 0.67
47 3 0.02
48 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTAGCACATAACCGTGGCGATGCA
Found at i:22808733 original size:44 final size:44
Alignment explanation
Indices: 22808631--22808741 Score: 127
Period size: 46 Copynumber: 2.5 Consensus size: 44
22808621 GTCGATGCCG
* * * *
22808631 TGTCCCAGACAGGTCTTACACTGACACATGTAACTGTACTGATGCA
1 TGTCCCAGACATGTCTTACACTGACACATCT-A-TGTACCGACGCA
22808677 TGTCCCAGACATGTCTTACACT-AGCACATCT-TGTACCCGACGCA
1 TGTCCCAGACATGTCTTACACTGA-CACATCTATGTA-CCGACGCA
*
22808721 TGTCCCAGACATGTCTGACAC
1 TGTCCCAGACATGTCTTACAC
22808742 CTGCTAAAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
43 4 0.07
44 26 0.45
45 1 0.02
46 27 0.47
ACGTcount: A:0.26, C:0.31, G:0.18, T:0.25
Consensus pattern (44 bp):
TGTCCCAGACATGTCTTACACTGACACATCTATGTACCGACGCA
Found at i:22810093 original size:11 final size:11
Alignment explanation
Indices: 22810077--22810101 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
22810067 GTATAATTAA
22810077 AATGAATTTAC
1 AATGAATTTAC
22810088 AATGAATTTAC
1 AATGAATTTAC
22810099 AAT
1 AAT
22810102 CCTATAGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.36
Consensus pattern (11 bp):
AATGAATTTAC
Found at i:22813903 original size:39 final size:38
Alignment explanation
Indices: 22813860--22813957 Score: 115
Period size: 39 Copynumber: 2.5 Consensus size: 38
22813850 CAGACTTAGG
* * * *
22813860 GTCCGCAGGCTATGTGTTGGAATTATATCCGGACCTTAA
1 GTCCGCAGGCTACGTGCTGGAAATATATCCGGACC-AAA
* *
22813899 GTCCGCAGGCTACGTGCTGGAAATATGTCCGGGCCAAA
1 GTCCGCAGGCTACGTGCTGGAAATATATCCGGACCAAA
*
22813937 GTCCCGCAGGCTTCGTGCTGG
1 GT-CCGCAGGCTACGTGCTGG
22813958 TATTATACCG
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 4 0.08
39 47 0.92
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (38 bp):
GTCCGCAGGCTACGTGCTGGAAATATATCCGGACCAAA
Found at i:22813969 original size:38 final size:37
Alignment explanation
Indices: 22813862--22814000 Score: 100
Period size: 39 Copynumber: 3.6 Consensus size: 37
22813852 GACTTAGGGT
* * *
22813862 CCGCAGGCTATGTGTTGGAATTATATCCGGACCTTAAGT-
1 CCGCAGGCT-TGTGCTGGAATTATA-CCGGGCC-AAAGTC
* * *
22813901 CCGCAGGCTACGTGCTGGAAATATGTCCGGGCCAAAGTC
1 CCGCAGGCT-TGTGCTGGAATTAT-ACCGGGCCAAAGTC
* ** *
22813940 CCGCAGGCTTCGTGCTGGTATTATACCGGGTTTAAATTC
1 CCGCAGGCTT-GTGCTGGAATTATACCGGG-CCAAAGTC
*
22813979 CCACAGGCTTGTGCTGGTAATT
1 CCGCAGGCTTGTGCTGG-AATT
22814001 GGTTTCAAGT
Statistics
Matches: 80, Mismatches: 15, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
38 16 0.20
39 64 0.80
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (37 bp):
CCGCAGGCTTGTGCTGGAATTATACCGGGCCAAAGTC
Found at i:22821793 original size:39 final size:39
Alignment explanation
Indices: 22821695--22821797 Score: 109
Period size: 39 Copynumber: 2.6 Consensus size: 39
22821685 ATTTGATGTG
* ** * *
22821695 TATCCGTACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAATA
* *
22821734 TATCTGGACTTAAGGTCCGCAGGCTACGTGCTGGAAATA
1 TATCCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAATA
* *
22821773 TGTCCGGGC-TAAAGTCCCGCAGGCT
1 TATCCGGACTTAAAGT-CCGCAGGCT
22821798 TCAAGCTGGT
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
38 5 0.09
39 49 0.91
ACGTcount: A:0.21, C:0.23, G:0.29, T:0.26
Consensus pattern (39 bp):
TATCCGGACTTAAAGTCCGCAGGCTACGTGCTGGAAATA
Found at i:22821806 original size:39 final size:39
Alignment explanation
Indices: 22821763--22821837 Score: 89
Period size: 39 Copynumber: 1.9 Consensus size: 39
22821753 CAGGCTACGT
*
22821763 GCTGGAAATATGTCCGGG-CTAAAGTCCCGCAGGCTTCAA
1 GCTGGAAATAT-ACCGGGTCTAAAGTCCCGCAGGCTTCAA
* * * *
22821802 GCTGGTATTATACCGGGTTTAAATTCCCGCAGGCTT
1 GCTGGAAATATACCGGGTCTAAAGTCCCGCAGGCTT
22821838 GTGCTGGTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
38 5 0.17
39 25 0.83
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.27
Consensus pattern (39 bp):
GCTGGAAATATACCGGGTCTAAAGTCCCGCAGGCTTCAA
Found at i:22833070 original size:43 final size:42
Alignment explanation
Indices: 22833009--22833126 Score: 130
Period size: 42 Copynumber: 2.7 Consensus size: 42
22832999 TCCAAGACGT
* * *
22833009 GGTCTTACATGTAATCAAATATCGATGCTACTATCCCAGAAAA
1 GGTCTTACATGAAATCAAATA-CGATGCCAATATCCCAGAAAA
* * * *
22833052 GGTCTTACACGAAATCAAATACGATGCCAATGTCCCAGACAT
1 GGTCTTACATGAAATCAAATACGATGCCAATATCCCAGAAAA
22833094 GGTCTTACATGTAAATCATAAGT-CGATGCCAAT
1 GGTCTTACATG-AAATCA-AA-TACGATGCCAAT
22833127 GTCCTAGACG
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
42 26 0.41
43 25 0.39
44 12 0.19
45 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.26
Consensus pattern (42 bp):
GGTCTTACATGAAATCAAATACGATGCCAATATCCCAGAAAA
Found at i:22833141 original size:44 final size:42
Alignment explanation
Indices: 22832990--22833146 Score: 156
Period size: 43 Copynumber: 3.7 Consensus size: 42
22832980 AGCTCGTACA
* * *
22832990 ATGCCAACGTCCAAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATC-AA-ATCG
* * * * * *
22833033 ATGCTACTATCCCAGAAAAGGTCTTACACG-AAATCAAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAAT-CG
22833075 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCATAAGTCG
1 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCA-AA-TCG
* *
22833119 ATGCCAATGTCCTAGACGTGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
22833147 CGAAAACACA
Statistics
Matches: 92, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
41 2 0.02
42 28 0.30
43 31 0.34
44 30 0.33
45 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCAAATCG
Found at i:22833142 original size:86 final size:85
Alignment explanation
Indices: 22832990--22833151 Score: 200
Period size: 86 Copynumber: 1.9 Consensus size: 85
22832980 AGCTCGTACA
* * *
22832990 ATGCCAACGTCCAAGACGTGGTCTTACATGTAATCAAATATCGATGCTACTATCCCAGAAAAGGT
1 ATGCCAACGTCCAAGACATGGTCTTACATGTAATCAAATATCGATGCCAATATCCCAGAAAAGGT
22833055 CTTACACGAAATCAAATACG
66 CTTACACGAAATCAAATACG
* * * * * ***
22833075 ATGCCAATGTCCCAGACATGGTCTTACATGTAAATCATAA-GTCGATGCCAATGTCCTAGACGTG
1 ATGCCAACGTCCAAGACATGGTCTTACATGT-AATCA-AATATCGATGCCAATATCCCAGAAAAG
22833139 GTCTTACACGAAA
64 GTCTTACACGAAA
22833152 ACACATATCG
Statistics
Matches: 64, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
85 28 0.44
86 34 0.53
87 2 0.03
ACGTcount: A:0.34, C:0.23, G:0.18, T:0.25
Consensus pattern (85 bp):
ATGCCAACGTCCAAGACATGGTCTTACATGTAATCAAATATCGATGCCAATATCCCAGAAAAGGT
CTTACACGAAATCAAATACG
Found at i:22834841 original size:42 final size:42
Alignment explanation
Indices: 22834717--22834876 Score: 187
Period size: 42 Copynumber: 3.8 Consensus size: 42
22834707 ACACAGTACT
* * * *
22834717 ATATCAATTCCATATCCCAGATATGGTCTTACATGAAATCTC
1 ATATCAATGCCAAATCCCAGATATGGTCTTACAAGAAGTCTC
* * * *
22834759 GTATCGATGCCAATAGCCCAGCTATGGTCTTACACA-AAGTCTC
1 ATATCAATGCCAA-ATCCCAGATATGGTCTTACA-AGAAGTCTC
*
22834802 ATATCAATGCCAAATCTCAGATATGGTCTTACAAGAAGTCTC
1 ATATCAATGCCAAATCCCAGATATGGTCTTACAAGAAGTCTC
* * *
22834844 GTATCGATGCCATATCCCAGATATGGTCTTACA
1 ATATCAATGCCAAATCCCAGATATGGTCTTACA
22834877 CGTAATCCTA
Statistics
Matches: 98, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
41 1 0.01
42 62 0.63
43 35 0.36
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.29
Consensus pattern (42 bp):
ATATCAATGCCAAATCCCAGATATGGTCTTACAAGAAGTCTC
Found at i:22834847 original size:85 final size:84
Alignment explanation
Indices: 22834704--22834877 Score: 251
Period size: 85 Copynumber: 2.1 Consensus size: 84
22834694 GAGATTCTGG
* * * *
22834704 TACACACAGTACTATATCAATTCCATATCCCAGATATGGTCTTACATGAAATCTCGTATCGATGC
1 TACACAAAGTACTATATCAATGCCAAATCCCAGATATGGTCTTACAAGAAATCTCGTATCGATGC
*
22834769 CAATAGCCCAGCTATGGTCT
66 C-ATAGCCCAGATATGGTCT
* *
22834789 TACACAAAGT-CTCATATCAATGCCAAATCTCAGATATGGTCTTACAAGAAGTCTCGTATCGATG
1 TACACAAAGTACT-ATATCAATGCCAAATCCCAGATATGGTCTTACAAGAAATCTCGTATCGATG
*
22834853 CCATATCCCAGATATGGTCT
65 CCATAGCCCAGATATGGTCT
22834873 TACAC
1 TACAC
22834878 GTAATCCTAG
Statistics
Matches: 80, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
84 23 0.29
85 57 0.71
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (84 bp):
TACACAAAGTACTATATCAATGCCAAATCCCAGATATGGTCTTACAAGAAATCTCGTATCGATGC
CATAGCCCAGATATGGTCT
Found at i:22835723 original size:12 final size:13
Alignment explanation
Indices: 22835706--22835734 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
22835696 AGATGGACAA
22835706 AATTTGGC-TTTT
1 AATTTGGCTTTTT
22835718 AATTTGGCTTTTT
1 AATTTGGCTTTTT
22835731 AATT
1 AATT
22835735 CATTTAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.21, C:0.07, G:0.14, T:0.59
Consensus pattern (13 bp):
AATTTGGCTTTTT
Found at i:22838846 original size:20 final size:20
Alignment explanation
Indices: 22838821--22838861 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
22838811 AAGTTGTATC
22838821 GATGCCATATCCCAGATATG
1 GATGCCATATCCCAGATATG
22838841 GATGCCATATCCCAGATATG
1 GATGCCATATCCCAGATATG
22838861 G
1 G
22838862 TCTTACACGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (20 bp):
GATGCCATATCCCAGATATG
Found at i:22848647 original size:50 final size:50
Alignment explanation
Indices: 22848531--22848714 Score: 253
Period size: 50 Copynumber: 3.7 Consensus size: 50
22848521 CTGGTACGCA
22848531 TAGTAGCCTGCACTTAGTACTACACATGTGACC-AATTATCCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAATTATCCGATACACG
* * *
22848580 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACTGTCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAATTATCCGATACACG
* * * * * * *
22848630 TAGTAGCCTACACTTAGTACTACACATGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-TTATCCGATACACG
*
22848681 TAGTAGCCTGCACTTAGTACTACACATGCGACCT
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT
22848715 CATAATAGAT
Statistics
Matches: 117, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
49 33 0.28
50 46 0.39
51 38 0.32
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAATTATCCGATACACG
Found at i:22848653 original size:26 final size:26
Alignment explanation
Indices: 22848574--22848654 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
22848564 AATTATCCGA
*
22848574 TACACGTAGTAGCCTGCACTTAGTAC
1 TACACGTAGTAGCCTACACTTAGTAC
* *
22848600 TACACAT-GT-GACCTA-ACTGT-CTGA-
1 TACACGTAGTAG-CCTACACT-TAGT-AC
22848624 TACACGTAGTAGCCTACACTTAGTAC
1 TACACGTAGTAGCCTACACTTAGTAC
22848650 TACAC
1 TACAC
22848655 ATGTGATCGA
Statistics
Matches: 42, Mismatches: 5, Indels: 16
0.67 0.08 0.25
Matches are distributed among these distances:
24 11 0.26
25 15 0.36
26 16 0.38
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (26 bp):
TACACGTAGTAGCCTACACTTAGTAC
Found at i:22848705 original size:101 final size:99
Alignment explanation
Indices: 22848531--22848714 Score: 287
Period size: 101 Copynumber: 1.8 Consensus size: 99
22848521 CTGGTACGCA
* *
22848531 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATCCGATACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTACACTTAGTACTACACATGTGACCAATTATCCGATACACATAGTAGCCTGCACTTA
*
22848596 GTACTACACATGTGACCTAACTGTCTGATACACG
66 GTACTACACATGCGACCTAACTGTCTGATACACG
* * * *
22848630 TAGTAGCCTACACTTAGTACTACACATGTGATCGAAGTTATCGGGTACGCATAGTAGCCTGCACT
1 TAGTAGCCTACACTTAGTACTACACATGTGA-CCAA-TTATCCGATACACATAGTAGCCTGCACT
22848695 TAGTACTACACATGCGACCT
64 TAGTACTACACATGCGACCT
22848715 CATAATAGAT
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
99 30 0.39
100 3 0.04
101 43 0.57
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (99 bp):
TAGTAGCCTACACTTAGTACTACACATGTGACCAATTATCCGATACACATAGTAGCCTGCACTTA
GTACTACACATGCGACCTAACTGTCTGATACACG
Found at i:22857214 original size:31 final size:31
Alignment explanation
Indices: 22857179--22857242 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
22857169 ACGGTCATAC
22857179 CTTAGCTTAATTTCATTTTTACAATAATTCT
1 CTTAGCTTAATTTCATTTTTACAATAATTCT
22857210 CTTAGCTTAATTTCATTTTTACAATAATTCT
1 CTTAGCTTAATTTCATTTTTACAATAATTCT
22857241 CT
1 CT
22857243 AAGTTTTACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.28, C:0.17, G:0.03, T:0.52
Consensus pattern (31 bp):
CTTAGCTTAATTTCATTTTTACAATAATTCT
Found at i:22863019 original size:23 final size:24
Alignment explanation
Indices: 22862970--22863022 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
22862960 AAACCTGCAC
*
22862970 TTAAAGTGTTTAGCTTAAGACACA
1 TTAAAATGTTTAGCTTAAGACACA
*
22862994 TTAAAATGTTGTAGC-T-AGACATA
1 TTAAAATGTT-TAGCTTAAGACACA
22863017 TTAAAA
1 TTAAAA
22863023 ACATGTATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 12 0.46
24 10 0.38
25 4 0.15
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.34
Consensus pattern (24 bp):
TTAAAATGTTTAGCTTAAGACACA
Found at i:22865866 original size:35 final size:35
Alignment explanation
Indices: 22865818--22865890 Score: 110
Period size: 35 Copynumber: 2.1 Consensus size: 35
22865808 GTTAAATGGC
* *
22865818 GTGCTGGATGGTACTGGCTCTTACGAGCAACTGGT
1 GTGCTAGACGGTACTGGCTCTTACGAGCAACTGGT
* *
22865853 GTGCTAGACGGTACTGGCTCTTATGAGCATCTGGT
1 GTGCTAGACGGTACTGGCTCTTACGAGCAACTGGT
22865888 GTG
1 GTG
22865891 TTGATTGGTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.16, C:0.19, G:0.34, T:0.30
Consensus pattern (35 bp):
GTGCTAGACGGTACTGGCTCTTACGAGCAACTGGT
Found at i:22884098 original size:28 final size:29
Alignment explanation
Indices: 22884046--22884100 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
22884036 ACAGCGGTTT
*
22884046 TCACACGGCCAAGCACACGCCCGTGTCCC
1 TCACACGGCCAAGCACACCCCCGTGTCCC
*
22884075 TCACACGGCCTAG-ACACCCCCGTGTC
1 TCACACGGCCAAGCACACCCCCGTGTC
22884101 GTCGTCCGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.20, C:0.47, G:0.20, T:0.13
Consensus pattern (29 bp):
TCACACGGCCAAGCACACCCCCGTGTCCC
Found at i:22905287 original size:21 final size:20
Alignment explanation
Indices: 22905246--22905289 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
22905236 TAGGGATTTG
**
22905246 GTATCGATACCTTATTTCAA
1 GTATCGATACCTTATAACAA
22905266 GTATCGATACTCTTATAACAA
1 GTATCGATAC-CTTATAACAA
22905287 GTA
1 GTA
22905290 CTGATAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.36
Consensus pattern (20 bp):
GTATCGATACCTTATAACAA
Found at i:22907991 original size:101 final size:101
Alignment explanation
Indices: 22907880--22908142 Score: 420
Period size: 101 Copynumber: 2.6 Consensus size: 101
22907870 ACATTTGTAG
* *
22907880 TGCCATAACCCAATTATAGTATTATCATCAGAATGCCATAGCCCAGCTATGGTCTTACATATAAA
1 TGCCATAACCCAATTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGTCTTACATATAAA
*
22907945 CACTGCCATAGTCCAACCATGGTCTTATGTA-CATAC
66 CACTGCCATAGTCCAACCATGGTCTTACG-ACCATAC
*
22907981 TGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGTCTTACATATAAA
1 TGCCATAACCCAATTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGTCTTACATATAAA
* *
22908046 CACTGCCATGGTCCAACCATGGTCTTACGACCATAG
66 CACTGCCATAGTCCAACCATGGTCTTACGACCATAC
* * * *
22908082 TGTCATAACCCAATTATGGTCTTATCATCAGAATGTCATAGCCTAGCTATGGTTTTACATA
1 TGCCATAACCCAATTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGTCTTACATA
22908143 CGAATGCAAC
Statistics
Matches: 150, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
100 1 0.01
101 149 0.99
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (101 bp):
TGCCATAACCCAATTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGTCTTACATATAAA
CACTGCCATAGTCCAACCATGGTCTTACGACCATAC
Found at i:22908000 original size:33 final size:33
Alignment explanation
Indices: 22907981--22908134 Score: 96
Period size: 33 Copynumber: 4.6 Consensus size: 33
22907971 ATGTACATAC
*
22907981 TGCCATAACCCAGTTATGGTCTTATCATCAGAA
1 TGCCATAACCCAGCTATGGTCTTATCATCAGAA
* * *
22908014 TGCCATAGCCCAGCTATGGTCTTA-CATATAAACA
1 TGCCATAACCCAGCTATGGTCTTATCAT-CAGA-A
*** * * * * *
22908048 CTGCCATGGTCCAACCATGGTCTTA-CGACCATAG
1 -TGCCATAACCCAGCTATGGTCTTATC-ATCAGAA
* **
22908082 TGTCATAACCCAATTATGGTCTTATCATCAGAA
1 TGCCATAACCCAGCTATGGTCTTATCATCAGAA
* * *
22908115 TGTCATAGCCTAGCTATGGT
1 TGCCATAACCCAGCTATGGT
22908135 TTTACATACG
Statistics
Matches: 91, Mismatches: 25, Indels: 10
0.72 0.20 0.08
Matches are distributed among these distances:
32 3 0.03
33 62 0.68
34 2 0.02
35 23 0.25
36 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (33 bp):
TGCCATAACCCAGCTATGGTCTTATCATCAGAA
Found at i:22923621 original size:47 final size:47
Alignment explanation
Indices: 22923570--22923702 Score: 153
Period size: 46 Copynumber: 2.9 Consensus size: 47
22923560 GAATTATAAG
* * *
22923570 GCATCCGAACTCGTTGAGTTGCATTCTGAGTTCACCTATGGATGC-AA
1 GCATCCGAACTCATTGAGTTGCATTCCGAGTTCA-CTATGGATACGAA
* ** *
22923617 GCATCCAAACTCATTGAGTTGTGTTCCGAGTTCATTATGGATACGAA
1 GCATCCGAACTCATTGAGTTGCATTCCGAGTTCACTATGGATACGAA
* * *
22923664 -CACCCGAGCTCATTGAGTTGCATTCCGAGTTCATTATGG
1 GCATCCGAACTCATTGAGTTGCATTCCGAGTTCACTATGG
22923703 GTGAGATTAT
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
46 42 0.58
47 31 0.42
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.31
Consensus pattern (47 bp):
GCATCCGAACTCATTGAGTTGCATTCCGAGTTCACTATGGATACGAA
Found at i:22927090 original size:32 final size:32
Alignment explanation
Indices: 22927047--22927110 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
22927037 TGTGTCAGAT
22927047 AATTGTTTTCGTGTGATTTCAATTGATGAGAG
1 AATTGTTTTCGTGTGATTTCAATTGATGAGAG
*
22927079 AATTTTTTTCGTGTGATTTCAATTGATGAGAG
1 AATTGTTTTCGTGTGATTTCAATTGATGAGAG
22927111 GCATAAACTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.25, C:0.06, G:0.23, T:0.45
Consensus pattern (32 bp):
AATTGTTTTCGTGTGATTTCAATTGATGAGAG
Found at i:22934008 original size:46 final size:46
Alignment explanation
Indices: 22933939--22934028 Score: 153
Period size: 46 Copynumber: 2.0 Consensus size: 46
22933929 AATCTATTGC
* *
22933939 CTACATCTCAGTGGTACCTTCGGCTACAATATAGTGGTAGCTTCAG
1 CTACATCTCAGTGGTACCATCGGCTACAATACAGTGGTAGCTTCAG
*
22933985 CTACATCTCAGTGGTAGCATCGGCTACAATACAGTGGTAGCTTC
1 CTACATCTCAGTGGTACCATCGGCTACAATACAGTGGTAGCTTC
22934029 GCCTACGTTA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (46 bp):
CTACATCTCAGTGGTACCATCGGCTACAATACAGTGGTAGCTTCAG
Found at i:22934040 original size:23 final size:23
Alignment explanation
Indices: 22933947--22934034 Score: 106
Period size: 23 Copynumber: 3.8 Consensus size: 23
22933937 GCCTACATCT
*
22933947 CAGTGGTACCTTCGGCTACAATA
1 CAGTGGTAGCTTCGGCTACAATA
* * *
22933970 TAGTGGTAGCTTCAGCTAC-ATCT
1 CAGTGGTAGCTTCGGCTACAAT-A
*
22933993 CAGTGGTAGCATCGGCTACAATA
1 CAGTGGTAGCTTCGGCTACAATA
*
22934016 CAGTGGTAGCTTCGCCTAC
1 CAGTGGTAGCTTCGGCTAC
22934035 GTTACAATGA
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
22 2 0.04
23 49 0.92
24 2 0.04
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (23 bp):
CAGTGGTAGCTTCGGCTACAATA
Found at i:22940207 original size:23 final size:23
Alignment explanation
Indices: 22940158--22940225 Score: 73
Period size: 23 Copynumber: 3.0 Consensus size: 23
22940148 ATCTCAGTGG
* * * *
22940158 TAGCTTCGGCTACAATATAGTGG
1 TAGCTTCGGCTACATTACAATGA
*
22940181 TAGCTTCGGCTACGTTACAATGA
1 TAGCTTCGGCTACATTACAATGA
* *
22940204 TAGCTTCGACTATATTACAATG
1 TAGCTTCGGCTACATTACAATG
22940226 TGGCACTATG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 37 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (23 bp):
TAGCTTCGGCTACATTACAATGA
Found at i:22942929 original size:24 final size:24
Alignment explanation
Indices: 22942868--22942949 Score: 101
Period size: 24 Copynumber: 3.4 Consensus size: 24
22942858 CTCGAAACAA
*
22942868 TGAAAAGGTTGAAAAGGATACCAG
1 TGAAAAGGTTGAAAAGGATACCAT
** *
22942892 TGAAAACATCGAAAAGGATACCAT
1 TGAAAAGGTTGAAAAGGATACCAT
* *
22942916 TGAAAAGGTTGAAAATGATATCAT
1 TGAAAAGGTTGAAAAGGATACCAT
*
22942940 TGAAATGGTT
1 TGAAAAGGTT
22942950 ATTATATTAT
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (24 bp):
TGAAAAGGTTGAAAAGGATACCAT
Found at i:22946347 original size:51 final size:49
Alignment explanation
Indices: 22946264--22946384 Score: 125
Period size: 51 Copynumber: 2.4 Consensus size: 49
22946254 CTGAAACACC
* * *
22946264 TTTTGTGGACAAGACATCACTGGTTTGCAGATAAACTACCACTAATAACA
1 TTTTGTGGACAAGACACCACTGATATGCAGATAAACTACCACTAATAA-A
* * * ** *
22946314 TTTTTGTGGACAAGGCACCACTGATATGTAGATATACTGTCACTGATAAA
1 -TTTTGTGGACAAGACACCACTGATATGCAGATAAACTACCACTAATAAA
* *
22946364 TTTAGTGGACAAGCCACCACT
1 TTTTGTGGACAAGACACCACT
22946385 TATTCGCAAA
Statistics
Matches: 59, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
49 19 0.32
50 1 0.02
51 39 0.66
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (49 bp):
TTTTGTGGACAAGACACCACTGATATGCAGATAAACTACCACTAATAAA
Found at i:22950825 original size:14 final size:15
Alignment explanation
Indices: 22950797--22950825 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22950787 TTCTTTCAAG
22950797 GACAAGAATAATCCA
1 GACAAGAATAATCCA
22950812 GACAAGAA-AATCCA
1 GACAAGAATAATCCA
22950826 AATTAACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.55, C:0.21, G:0.14, T:0.10
Consensus pattern (15 bp):
GACAAGAATAATCCA
Found at i:22951543 original size:15 final size:15
Alignment explanation
Indices: 22951525--22951574 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
22951515 ACGGAGGAGC
22951525 CCAAAATAAAGAAAT
1 CCAAAATAAAGAAAT
* *
22951540 CCAAGATAAAAAAAT
1 CCAAAATAAAGAAAT
** *
22951555 CCATGATAAGGAAAT
1 CCAAAATAAAGAAAT
22951570 CCAAA
1 CCAAA
22951575 TTACAATACC
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.60, C:0.16, G:0.10, T:0.14
Consensus pattern (15 bp):
CCAAAATAAAGAAAT
Found at i:22968956 original size:39 final size:40
Alignment explanation
Indices: 22968897--22969025 Score: 172
Period size: 39 Copynumber: 3.3 Consensus size: 40
22968887 CGCTTGGATA
* *
22968897 AAAAACGCCGCTATAGATCGAGCATTAG-GGCACTTTTTG
1 AAAAACGCCACTATAGATCGAGCATTAGCGGCGCTTTTTG
*
22968936 AAAAACGCCACTATATATCGAGCATTAGCGGCGCTTTTT-
1 AAAAACGCCACTATAGATCGAGCATTAGCGGCGCTTTTTG
* * * * *
22968975 AAAAAAGCCGCTATAGGTCGACCATTAGTGGCGCTTTTTG
1 AAAAACGCCACTATAGATCGAGCATTAGCGGCGCTTTTTG
22969015 AAAAACGCCAC
1 AAAAACGCCAC
22969026 AAAAAAATTA
Statistics
Matches: 77, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
39 59 0.77
40 18 0.23
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (40 bp):
AAAAACGCCACTATAGATCGAGCATTAGCGGCGCTTTTTG
Found at i:22969224 original size:7 final size:7
Alignment explanation
Indices: 22969198--22969442 Score: 77
Period size: 7 Copynumber: 34.6 Consensus size: 7
22969188 TAGTTACTAT
*
22969198 TTTAAGG
1 TTTATGG
22969205 TTTATGG
1 TTTATGG
**
22969212 ACTATGG
1 TTTATGG
22969219 TTTATGG
1 TTTATGG
*
22969226 TTTAAGG
1 TTTATGG
* *
22969233 GTT-GGTG
1 TTTATG-G
**
22969240 TTTAAAG
1 TTTATGG
*
22969247 TTTAGGG
1 TTTATGG
*
22969254 GTTAGTGG
1 TTTA-TGG
*
22969262 TTTATAG
1 TTTATGG
*
22969269 TTTAAGGG
1 TTT-ATGG
*
22969277 TTTAGGG
1 TTTATGG
*
22969284 TTTATAG
1 TTTATGG
*
22969291 TTTATGT
1 TTTATGG
22969298 TTTATGG
1 TTTATGG
*
22969305 TTTAGGG
1 TTTATGG
*
22969312 TTTAGGGG
1 TTTA-TGG
* * *
22969320 ATAAAGG
1 TTTATGG
*
22969327 -TTATGA
1 TTTATGG
*
22969333 TATAAT-G
1 T-TTATGG
**
22969340 TTTATTA
1 TTTATGG
22969347 TTT-TGGGG
1 TTTAT--GG
*
22969355 TTTAGGG
1 TTTATGG
22969362 TTTATGG
1 TTTATGG
* * *
22969369 CTTAAGA
1 TTTATGG
*
22969376 TTTAAGG
1 TTTATGG
22969383 TTTAAT-G
1 TTT-ATGG
* *
22969390 TCTAGGG
1 TTTATGG
*
22969397 TTTAGGG
1 TTTATGG
*
22969404 TTTAGGG
1 TTTATGG
22969411 TTTATGG
1 TTTATGG
22969418 TTTATGG
1 TTTATGG
*
22969425 TTTAGGG
1 TTTATGG
22969432 TTTATGG
1 TTTATGG
22969439 TTTA
1 TTTA
22969443 ATGTCTATAT
Statistics
Matches: 174, Mismatches: 51, Indels: 26
0.69 0.20 0.10
Matches are distributed among these distances:
6 9 0.05
7 143 0.82
8 22 0.13
ACGTcount: A:0.21, C:0.01, G:0.31, T:0.47
Consensus pattern (7 bp):
TTTATGG
Found at i:22969270 original size:22 final size:22
Alignment explanation
Indices: 22969216--22969294 Score: 90
Period size: 22 Copynumber: 3.6 Consensus size: 22
22969206 TTATGGACTA
* * *
22969216 TGGTTTATGGTTTAAGGGTTGG
1 TGGTTTATAGTTTAGGGGTTAG
*
22969238 T-GTTTAAAGTTTAGGGGTTAG
1 TGGTTTATAGTTTAGGGGTTAG
*
22969259 TGGTTTATAGTTTAAGGGTTTAG
1 TGGTTTATAGTTT-AGGGGTTAG
22969282 -GGTTTATAGTTTA
1 TGGTTTATAGTTTA
22969295 TGTTTTATGG
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
21 18 0.37
22 23 0.47
23 8 0.16
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.47
Consensus pattern (22 bp):
TGGTTTATAGTTTAGGGGTTAG
Found at i:22969286 original size:15 final size:15
Alignment explanation
Indices: 22969217--22969287 Score: 51
Period size: 15 Copynumber: 4.9 Consensus size: 15
22969207 TATGGACTAT
*
22969217 GGTTTATGGTTTAAG
1 GGTTTAGGGTTTAAG
22969232 GG-TT-GGTGTTTAA-
1 GGTTTAGG-GTTTAAG
* *
22969245 AGTTTAGGGGTT-AG
1 GGTTTAGGGTTTAAG
**
22969259 TGGTTTATAGTTTAAG
1 -GGTTTAGGGTTTAAG
22969275 GGTTTAGGGTTTA
1 GGTTTAGGGTTTA
22969288 TAGTTTATGT
Statistics
Matches: 41, Mismatches: 9, Indels: 12
0.66 0.15 0.19
Matches are distributed among these distances:
13 3 0.07
14 13 0.32
15 23 0.56
16 2 0.05
ACGTcount: A:0.20, C:0.00, G:0.35, T:0.45
Consensus pattern (15 bp):
GGTTTAGGGTTTAAG
Found at i:22969419 original size:21 final size:21
Alignment explanation
Indices: 22969353--22969442 Score: 90
Period size: 21 Copynumber: 4.3 Consensus size: 21
22969343 ATTATTTTGG
* * *
22969353 GGTTTAGGGTTTATGGCTTAA
1 GGTTTAGGGTTTAGGGTTTAT
* * ** * *
22969374 GATTTAAGGTTTAATGTCTAG
1 GGTTTAGGGTTTAGGGTTTAT
22969395 GGTTTAGGGTTTAGGGTTTAT
1 GGTTTAGGGTTTAGGGTTTAT
*
22969416 GGTTTATGGTTTAGGGTTTAT
1 GGTTTAGGGTTTAGGGTTTAT
22969437 GGTTTA
1 GGTTTA
22969443 ATGTCTATAT
Statistics
Matches: 55, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 55 1.00
ACGTcount: A:0.19, C:0.02, G:0.32, T:0.47
Consensus pattern (21 bp):
GGTTTAGGGTTTAGGGTTTAT
Found at i:22969473 original size:36 final size:35
Alignment explanation
Indices: 22969423--22969511 Score: 110
Period size: 36 Copynumber: 2.5 Consensus size: 35
22969413 TATGGTTTAT
*
22969423 GGTTTAGGGTTTATGGTTTAATGTCTA-TATTTTAAG
1 GGTTTAGGGTTTATGGTTTAATGTCTATTATGTT--G
* * *
22969459 GGTTTAGGGTTTATGATATAATGTTTATTATGTTG
1 GGTTTAGGGTTTATGGTTTAATGTCTATTATGTTG
22969494 GGTTTAGGGTTTA-GGTTT
1 GGTTTAGGGTTTATGGTTT
22969512 TATTGTTCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
34 3 0.07
35 14 0.30
36 24 0.52
37 5 0.11
ACGTcount: A:0.20, C:0.01, G:0.28, T:0.51
Consensus pattern (35 bp):
GGTTTAGGGTTTATGGTTTAATGTCTATTATGTTG
Found at i:22976307 original size:34 final size:34
Alignment explanation
Indices: 22976264--22976333 Score: 113
Period size: 34 Copynumber: 2.1 Consensus size: 34
22976254 TTATCCTTAA
*
22976264 AAGTATATAGTTGAAAGTTCAAATTTCAAAAATT
1 AAGTATATAGTTGAAAGTTCAAATTTAAAAAATT
* *
22976298 AAGTATATAGTTTAAATTTCAAATTTAAAAAATT
1 AAGTATATAGTTGAAAGTTCAAATTTAAAAAATT
22976332 AA
1 AA
22976334 ACATAATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.50, C:0.04, G:0.09, T:0.37
Consensus pattern (34 bp):
AAGTATATAGTTGAAAGTTCAAATTTAAAAAATT
Found at i:22976699 original size:43 final size:43
Alignment explanation
Indices: 22976388--22976679 Score: 347
Period size: 43 Copynumber: 6.8 Consensus size: 43
22976378 AATAATTTTT
* * * **
22976388 TAAAGGTCATATTTTTTAGCGGCGTTTGTGAGAAAAGCATCGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
* * * * *
22976431 TAAATGTCTAT-TT-TATAGTGCCGTTTGTGGCAAAAGCGCCGC
1 TAAAGGTC-ATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
* * *
22976473 TAAAGGTC-TGTTCTATAGCGGCGTTTGTGGGAAAAGCGCTGT
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
* * **
22976515 TAAAGGTCATGTTCTTTAGCGGTGTTTGTGGGACAAGCATCGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
*
22976558 TAAAGGTCATGTTCTTTAGCGGCGTTTGTAGGAAAAGCGCCGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
* *
22976601 TAAAGGTCATGTTCTCTAACGGCGTTTGTGGGAAAAGCGCCGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
* * *
22976644 TAAAGATCATGTTCTTTATCAGCGTTTGTGGGAAAA
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAA
22976680 ACGTTACTAA
Statistics
Matches: 212, Mismatches: 33, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
40 1 0.00
41 2 0.01
42 61 0.29
43 146 0.69
44 2 0.01
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.31
Consensus pattern (43 bp):
TAAAGGTCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
Found at i:22982130 original size:29 final size:28
Alignment explanation
Indices: 22982087--22982196 Score: 121
Period size: 29 Copynumber: 3.9 Consensus size: 28
22982077 CATGATTATG
* *
22982087 AATGTGACTGGGCCTAACGGGCCATATA
1 AATGTGATTGGGCCTAATGGGCCATATA
22982115 AATGTGATTTGGGCCTAATGGGCCATATA
1 AATGTGA-TTGGGCCTAATGGGCCATATA
* * * *
22982144 CAGGTGATTTAGGCCTAATGGGCCATATG
1 AATGTGA-TTGGGCCTAATGGGCCATATA
* * *
22982173 AATATGATTGGGCTTAATAGGCCA
1 AATGTGATTGGGCCTAATGGGCCA
22982197 GATACAAGTA
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
28 21 0.30
29 48 0.70
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.27
Consensus pattern (28 bp):
AATGTGATTGGGCCTAATGGGCCATATA
Found at i:22985389 original size:55 final size:54
Alignment explanation
Indices: 22985301--22985555 Score: 251
Period size: 55 Copynumber: 4.8 Consensus size: 54
22985291 ATTAGGGTTT
*
22985301 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGC
* * * * * * *
22985356 AAGGAAATCATGTAAGACCATGTCAAGAAATGGC-ATTGATAAGTTACTATAAGGGA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAA-GGC
* * *
22985412 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGC
* *
22985464 AAGGCTACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * *
22985513 AACGATACCATGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAG
22985556 GTACCTGTGT
Statistics
Matches: 167, Mismatches: 26, Indels: 20
0.78 0.12 0.09
Matches are distributed among these distances:
49 39 0.23
52 9 0.05
53 38 0.23
54 12 0.07
55 63 0.38
56 6 0.04
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:22985507 original size:108 final size:110
Alignment explanation
Indices: 22985308--22985508 Score: 309
Period size: 108 Copynumber: 1.8 Consensus size: 110
22985298 TTTAAGGATA
*
22985308 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
*
22985373 CCATGTCAAGAAATGGCATTGATAAGTTACTATAAGGGAAAGGTC
66 CCATGTCAAGAAATGGCAATGATAAGTTACTATAAGGGAAAGGTC
* **
22985418 CCATGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
* *
22985480 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGAAATGGCAATGATAAGTT
22985509 TCAAAACGAT
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.55
109 7 0.08
110 27 0.33
ACGTcount: A:0.34, C:0.17, G:0.26, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGAAATGGCAATGATAAGTTACTATAAGGGAAAGGTC
Found at i:22985768 original size:16 final size:16
Alignment explanation
Indices: 22985747--22985777 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22985737 ATAAATTTGA
22985747 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
22985763 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
22985778 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:22986990 original size:136 final size:135
Alignment explanation
Indices: 22986745--22987006 Score: 461
Period size: 136 Copynumber: 1.9 Consensus size: 135
22986735 CGACTGTGAT
* *
22986745 GCAGATTGCCAGCTTCTCTGGAAGTTTTAAAATATATTGTTTGAGTTGTTTAAGTAATAAATTAA
1 GCAGATTGCCAGCTTCTCTGGAAGTTTTAAAATAAATTGTTTGAGCTGTTTAAGTAATAAATTAA
* *
22986810 GTCCGTTAACACCTCGTGTTCGACTCCAGCGACGGTCTCGGGTACGGGGTGTTACATTTATATTT
66 GTCCGTTAACACCTCGTGTTCGACTCCAGCGACGGTCTCAGGTACGGGGCGTTACATTTATATTT
22986875 TTGAC
131 TTGAC
*
22986880 GCAGATTGCCAGCTTCTCTGGAAGTTTTAAAAATAAATTGTTTGAGCTGTTTAAGTAATGAATTA
1 GCAGATTGCCAGCTTCTCTGGAAGTTTT-AAAATAAATTGTTTGAGCTGTTTAAGTAATAAATTA
*
22986945 AGTCCGTTAACACCTCGTGTTCGACTCCGGCGACGGTCTCAGGTACGGGGCGTTACATTTAT
65 AGTCCGTTAACACCTCGTGTTCGACTCCAGCGACGGTCTCAGGTACGGGGCGTTACATTTAT
22987007 TGGTATCAGA
Statistics
Matches: 120, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
135 28 0.23
136 92 0.77
ACGTcount: A:0.25, C:0.18, G:0.23, T:0.34
Consensus pattern (135 bp):
GCAGATTGCCAGCTTCTCTGGAAGTTTTAAAATAAATTGTTTGAGCTGTTTAAGTAATAAATTAA
GTCCGTTAACACCTCGTGTTCGACTCCAGCGACGGTCTCAGGTACGGGGCGTTACATTTATATTT
TTGAC
Found at i:22992169 original size:27 final size:27
Alignment explanation
Indices: 22992132--22992336 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
22992122 TAAATTGTAC
22992132 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
22992159 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
22992186 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
22992212 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
22992240 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
22992268 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
22992295 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
22992322 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
22992337 GACTCAATAT
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:22992271 original size:109 final size:108
Alignment explanation
Indices: 22992133--22992336 Score: 320
Period size: 109 Copynumber: 1.9 Consensus size: 108
22992123 AAATTGTACA
* *
22992133 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
22992198 GCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATAT-ATAGCACTAAGTGTGCGAATTGACCATGCG
*
22992241 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTG
** * *
22992306 TGCGAGTTGATTATATAGCACTGAGTGTGCG
65 TGCGAAATGAATATATAGCACTAAGTGTGCG
22992337 GACTCAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
108 17 0.20
109 70 0.80
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (108 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
GCGAAATGAATATATAGCACTAAGTGTGCGAATTGACCATGCG
Found at i:23000306 original size:27 final size:27
Alignment explanation
Indices: 23000269--23000473 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
23000259 TAAATTGTAC
23000269 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
23000296 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
23000323 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23000349 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
23000377 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
23000405 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23000432 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
23000459 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23000474 GACTCAATAT
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 133 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:23000408 original size:109 final size:108
Alignment explanation
Indices: 23000270--23000473 Score: 320
Period size: 109 Copynumber: 1.9 Consensus size: 108
23000260 AAATTGTACA
* *
23000270 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGT
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
23000335 GCGAAATGAATATGAT-GCACTAAGTGTGCGAATTGACCATGCG
66 GCGAAATGAATAT-ATAGCACTAAGTGTGCGAATTGACCATGCG
*
23000378 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTG
** * *
23000443 TGCGAGTTGATTATATAGCACTGAGTGTGCG
65 TGCGAAATGAATATATAGCACTAAGTGTGCG
23000474 GACTCAATAT
Statistics
Matches: 87, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
108 17 0.20
109 70 0.80
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (108 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTACGTAGCACTAAGTGT
GCGAAATGAATATATAGCACTAAGTGTGCGAATTGACCATGCG
Found at i:23008398 original size:27 final size:27
Alignment explanation
Indices: 23008361--23008564 Score: 259
Period size: 27 Copynumber: 7.6 Consensus size: 27
23008351 TAAATTGTAC
23008361 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
23008388 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
** *
23008415 -GCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23008440 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
23008468 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
23008496 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23008523 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
23008550 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23008565 GACTCAATAT
Statistics
Matches: 156, Mismatches: 17, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
26 22 0.14
27 111 0.71
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:23008555 original size:82 final size:79
Alignment explanation
Indices: 23008361--23008564 Score: 264
Period size: 82 Copynumber: 2.5 Consensus size: 79
23008351 TAAATTGTAC
*
23008361 AGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTGCACTAAGTGT
1 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTGCACTAAGTGT
*
23008426 GCGAAATGAATATG
66 GCGAAATGAATACG
* **
23008440 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAG
1 A-GCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGA-TTTGACTATGT-GCACTAAG
** *
23008505 TGTGCGATTTGATTACG
63 TGTGCGAAATGAATACG
* * * *
23008522 TAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 -AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCG
23008565 GACTCAATAT
Statistics
Matches: 106, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
79 1 0.01
80 38 0.36
81 11 0.10
82 55 0.52
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (79 bp):
AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGATTTGACTATGTGCACTAAGTGT
GCGAAATGAATACG
Found at i:23018528 original size:8 final size:8
Alignment explanation
Indices: 23018497--23018539 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
23018487 TCTTTTGGGT
23018497 TTTTGGCA
1 TTTTGGCA
**
23018505 TTTCAGCA
1 TTTTGGCA
*
23018513 TTTCGGCA
1 TTTTGGCA
23018521 TTTTGGCA
1 TTTTGGCA
*
23018529 TTTTGGGA
1 TTTTGGCA
23018537 TTT
1 TTT
23018540 GCTAATTTAG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.14, C:0.14, G:0.23, T:0.49
Consensus pattern (8 bp):
TTTTGGCA
Found at i:23023011 original size:18 final size:18
Alignment explanation
Indices: 23022985--23023040 Score: 51
Period size: 18 Copynumber: 3.0 Consensus size: 18
23022975 TTTACACATC
*
23022985 TAGGTCCAACGGGCCCAT
1 TAGGCCCAACGGGCCCAT
**
23023003 TAGGCCCAAATGGCCCAACT
1 TAGGCCCAACGGGCCC-A-T
23023023 T-GGCCCAACGTGGCCCAT
1 TAGGCCCAACG-GGCCCAT
23023041 GACGGCTACA
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
18 14 0.47
19 9 0.30
20 7 0.23
ACGTcount: A:0.23, C:0.36, G:0.25, T:0.16
Consensus pattern (18 bp):
TAGGCCCAACGGGCCCAT
Found at i:23027446 original size:18 final size:18
Alignment explanation
Indices: 23027423--23027457 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
23027413 TAAAATGATT
23027423 TTTATT-TCTATTTAATTA
1 TTTATTATCT-TTTAATTA
23027441 TTTATTATCTTTTAATT
1 TTTATTATCTTTTAATT
23027458 TTATCACTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTATTATCTTTTAATTA
Found at i:23030451 original size:27 final size:27
Alignment explanation
Indices: 23030414--23030480 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
23030404 TAAATTGTAC
*
23030414 AGCACTAAGTGT-TGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAG-TTGATTATAT
23030441 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATAT
*
23030468 AGCACTGAGTGTG
1 AGCACTAAGTGTG
23030481 TGGACTTAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 34 0.92
28 3 0.08
ACGTcount: A:0.28, C:0.10, G:0.27, T:0.34
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATAT
Found at i:23030493 original size:27 final size:27
Alignment explanation
Indices: 23030414--23030495 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
23030404 TAAATTGTAC
* * *
23030414 AGCACTAAGTGT-TGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
23030441 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
* *
23030468 AGCACTGAGTGTGTGGACTT-AATATAT
1 AGCACTAAGTGTG-CGACTTGAATATAT
23030495 A
1 A
23030496 TTTTTGAATC
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
27 41 0.87
28 6 0.13
ACGTcount: A:0.30, C:0.10, G:0.24, T:0.35
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:23030495 original size:29 final size:27
Alignment explanation
Indices: 23030434--23030496 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
23030424 GTTGAGTTTG
* *
23030434 ATTATATAGCACTAAGTGTGCGAGTTG
1 ATTATATAGCACTAAGTGTGCGACTTA
* *
23030461 ATTATATAGCACTGAGTGTGTGGACTTA
1 ATTATATAGCACTAAGTGTG-CGACTTA
23030489 ATATATAT
1 AT-TATAT
23030497 TTTTGAATCA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 19 0.63
28 6 0.20
29 5 0.17
ACGTcount: A:0.32, C:0.10, G:0.22, T:0.37
Consensus pattern (27 bp):
ATTATATAGCACTAAGTGTGCGACTTA
Found at i:23047863 original size:27 final size:27
Alignment explanation
Indices: 23047841--23047937 Score: 140
Period size: 27 Copynumber: 3.6 Consensus size: 27
23047831 CGATTTGTAG
23047841 AATTACCATTTTACCCCCAATTTACAA
1 AATTACCATTTTACCCCCAATTTACAA
* *
23047868 AATTACCGTTTTACCCTCAATTTACAA
1 AATTACCATTTTACCCCCAATTTACAA
***
23047895 AATTACCATTTTACCTTTAATTTACAA
1 AATTACCATTTTACCCCCAATTTACAA
*
23047922 AATTACCGTTTTACCC
1 AATTACCATTTTACCC
23047938 TCGATTGTGA
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 63 1.00
ACGTcount: A:0.34, C:0.26, G:0.02, T:0.38
Consensus pattern (27 bp):
AATTACCATTTTACCCCCAATTTACAA
Found at i:23047977 original size:27 final size:27
Alignment explanation
Indices: 23047942--23048098 Score: 176
Period size: 27 Copynumber: 5.8 Consensus size: 27
23047932 TTACCCTCGA
*
23047942 TTGTGAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
23047969 TTGTAAAATTACCAAAATACCCCTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
** *
23047996 TTGTAAAATTACGGAAATACCACTAGT
1 TTGTAAAATTACCAAAATACCCCTAGT
* * *
23048023 TTGTGAAATTACCGAAATA-CCCTCAAT
1 TTGTAAAATTACCAAAATACCCCT-AGT
*
23048050 TAGTAAAATTACCAAAATACCCCT-GAT
1 TTGTAAAATTACCAAAATACCCCTAG-T
**
23048077 TTACAAAATTA-CAGAAATACCC
1 TTGTAAAATTACCA-AAATACCC
23048099 TTGACTTTTT
Statistics
Matches: 111, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
26 5 0.05
27 102 0.92
28 4 0.04
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (27 bp):
TTGTAAAATTACCAAAATACCCCTAGT
Found at i:23048043 original size:81 final size:81
Alignment explanation
Indices: 23047942--23048097 Score: 226
Period size: 81 Copynumber: 1.9 Consensus size: 81
23047932 TTACCCTCGA
* * **
23047942 TTGTGAAATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCT-AGTTTGTAAAAT
1 TTGTGAAATTACCAAAATACCCTC-AATTAGTAAAATTACCAAAATACCCCTGA-TTTACAAAAT
*
23048005 TACGGAAATACCACTAGT
64 TACAGAAATACCACTAGT
*
23048023 TTGTGAAATTACCGAAATACCCTCAATTAGTAAAATTACCAAAATACCCCTGATTTACAAAATTA
1 TTGTGAAATTACCAAAATACCCTCAATTAGTAAAATTACCAAAATACCCCTGATTTACAAAATTA
23048088 CAGAAATACC
66 CAGAAATACC
23048098 CTTGACTTTT
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
81 65 0.97
82 2 0.03
ACGTcount: A:0.42, C:0.21, G:0.10, T:0.28
Consensus pattern (81 bp):
TTGTGAAATTACCAAAATACCCTCAATTAGTAAAATTACCAAAATACCCCTGATTTACAAAATTA
CAGAAATACCACTAGT
Found at i:23048099 original size:54 final size:53
Alignment explanation
Indices: 23047807--23048099 Score: 178
Period size: 54 Copynumber: 5.5 Consensus size: 53
23047797 AATACTTTAG
* * * * * * *** *
23047807 TTTACCAAATTACTGAAATGCCCTCGATTTGTAGAATTACCATTTTACCCCCAA
1 TTTACAAAATTACCGAAATACCCTCAATTAGTAAAATTACCAAAATA-CCCCTA
*** * *** **
23047861 TTTACAAAATTACCGTTTTACCCTCAATTTA-CAAAATTACCATTTTACCTTTAA
1 TTTACAAAATTACCGAAATACCCTCAA-TTAGTAAAATTACCAAAATACCCCT-A
*** * *
23047915 TTTACAAAATTACCGTTTTACCCTCGATT-GTGAAATTACCAAAATACCCCTA
1 TTTACAAAATTACCGAAATACCCTCAATTAGTAAAATTACCAAAATACCCCTA
** * * * ** *
23047967 GTTTGTAAAATTACCAAAATACCC-CTAGTTTGTAAAATTACGGAAATACCACTA
1 -TTTACAAAATTACCGAAATACCCTC-AATTAGTAAAATTACCAAAATACCCCTA
***
23048021 GTTTGTGAAATTACCGAAATACCCTCAATTAGTAAAATTACCAAAATACCCCTGA
1 -TTTACAAAATTACCGAAATACCCTCAATTAGTAAAATTACCAAAATACCCCT-A
*
23048076 TTTACAAAATTACAGAAATACCCT
1 TTTACAAAATTACCGAAATACCCT
23048100 TGACTTTTTA
Statistics
Matches: 187, Mismatches: 44, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
52 2 0.01
53 37 0.20
54 144 0.77
55 4 0.02
ACGTcount: A:0.37, C:0.23, G:0.08, T:0.32
Consensus pattern (53 bp):
TTTACAAAATTACCGAAATACCCTCAATTAGTAAAATTACCAAAATACCCCTA
Found at i:23048149 original size:27 final size:27
Alignment explanation
Indices: 23048054--23048161 Score: 103
Period size: 27 Copynumber: 3.9 Consensus size: 27
23048044 CTCAATTAGT
** * *
23048054 AAAATTACCAAAATACCCCTGATTTAC
1 AAAATTACTGAAATACCCTTGGTTTAC
* *
23048081 AAAATTACAGAAATACCCTTGACTTTTTA-
1 AAAATTACTGAAATACCCTTG---GTTTAC
*
23048110 AAAATTA-TAGAAATACCATTGGTTTAC
1 AAAATTACT-GAAATACCCTTGGTTTAC
23048137 AAAATTACTGAAATACCCTTGGTTT
1 AAAATTACTGAAATACCCTTGGTTT
23048162 GTAGATTTAC
Statistics
Matches: 67, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
26 4 0.06
27 40 0.60
28 1 0.01
29 18 0.27
30 4 0.06
ACGTcount: A:0.42, C:0.18, G:0.08, T:0.32
Consensus pattern (27 bp):
AAAATTACTGAAATACCCTTGGTTTAC
Found at i:23048256 original size:27 final size:27
Alignment explanation
Indices: 23048215--23048279 Score: 69
Period size: 27 Copynumber: 2.4 Consensus size: 27
23048205 ACCCCTAATT
* *
23048215 GGTAAAAAGATTGTAA-AGCCCCTGTAG
1 GGTAAAATGACTGTAATA-CCCCTGTAG
* * *
23048242 GGTAAAGTGACTGTAATACCCTTGTAT
1 GGTAAAATGACTGTAATACCCCTGTAG
23048269 GGTAAAATGAC
1 GGTAAAATGAC
23048280 GAATATGCCC
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
27 30 0.97
28 1 0.03
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (27 bp):
GGTAAAATGACTGTAATACCCCTGTAG
Found at i:23049162 original size:24 final size:24
Alignment explanation
Indices: 23049080--23049162 Score: 96
Period size: 25 Copynumber: 3.4 Consensus size: 24
23049070 AGGAAGTGCT
* * *
23049080 AAAAGGGCTCTGCCCGAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
23049104 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
*
23049129 AGAAAGGGCTTTGCCCCAG-TTATT
1 A-AAAGGGCTTTGCCCCAGTTTATC
23049153 AAAAGAGGCT
1 AAAAG-GGCT
23049163 AGGCCTTCAG
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 38 0.73
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:23049356 original size:42 final size:42
Alignment explanation
Indices: 23049297--23049428 Score: 255
Period size: 42 Copynumber: 3.1 Consensus size: 42
23049287 TAGTCTCCCC
23049297 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
23049339 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
23049381 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
23049423 AAATGG
1 AAATGG
23049429 CCTAACGGCC
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
42 89 1.00
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:23049488 original size:31 final size:31
Alignment explanation
Indices: 23049453--23049598 Score: 206
Period size: 31 Copynumber: 4.7 Consensus size: 31
23049443 CGTTTACAGT
23049453 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
23049484 AAAGGCTTCAGCCCAGTGATACGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
23049515 AAAGGCTTCAGCCCTA-TCATATGATTTATGA
1 AAAGGCTTCGGCCC-AGTGATATGATTTATGA
* *
23049546 AAAGGCTTCGGCCGAGTGATATGATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
23049577 AAAGGTTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
23049599 TAAAGACTAA
Statistics
Matches: 103, Mismatches: 10, Indels: 5
0.87 0.08 0.04
Matches are distributed among these distances:
30 6 0.06
31 96 0.93
32 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:23051788 original size:14 final size:14
Alignment explanation
Indices: 23051769--23051796 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
23051759 CAAATGGTGT
23051769 CTCCAAATTTTTAA
1 CTCCAAATTTTTAA
23051783 CTCCAAATTTTTAA
1 CTCCAAATTTTTAA
23051797 GGCAAATACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.43
Consensus pattern (14 bp):
CTCCAAATTTTTAA
Found at i:23059770 original size:21 final size:23
Alignment explanation
Indices: 23059724--23059779 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 23
23059714 TTCAAACCTT
*
23059724 TATTTTAATTTTATTTATTTTAA
1 TATTTTAATTTTATTTATTCTAA
23059747 TATTTT-ATTTTA-TTATTCCTATA
1 TATTTTAATTTTATTTATT-CTA-A
23059770 TATTTTAATT
1 TATTTTAATT
23059780 ATTTAACCTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 5 0.17
22 8 0.28
23 13 0.45
24 3 0.10
ACGTcount: A:0.29, C:0.04, G:0.00, T:0.68
Consensus pattern (23 bp):
TATTTTAATTTTATTTATTCTAA
Found at i:23062961 original size:42 final size:42
Alignment explanation
Indices: 23062915--23063024 Score: 157
Period size: 42 Copynumber: 2.6 Consensus size: 42
23062905 TACCATACCA
* *
23062915 ATGCCATATCCCAGCTATGGTCTTACACGAAATCCCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCCCATATAG
* * * *
23062957 ATGCCATATCCTAGATATGGTCTTACATGAAGTCTCATATAG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCCCATATAG
*
23062999 ATGCCCTATCCCAGATATGGTCTTAC
1 ATGCCATATCCCAGATATGGTCTTAC
23063025 TCATAGTCTT
Statistics
Matches: 60, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 60 1.00
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCCCATATAG
Found at i:23067110 original size:40 final size:40
Alignment explanation
Indices: 23067050--23067201 Score: 144
Period size: 40 Copynumber: 3.8 Consensus size: 40
23067040 CACCAGTTTG
** * * * *
23067050 TGGACAAGCCACCAGTATTGCAGATAAACTGCCAGTACTA
1 TGGACAAGCCACCAAAATTGCAAACAAGCTGCCAGTAATA
* * *
23067090 TGGACAAGCCACCAAAATTGCAAACAAGCTAG-CAATATTG
1 TGGACAAGCCACCAAAATTGCAAACAAGCT-GCCAGTAATA
*
23067130 TGGACAAGCCATCAAAATTGCAAACAAGCTGCCAGTAATA
1 TGGACAAGCCACCAAAATTGCAAACAAGCTGCCAGTAATA
* ***
23067170 TGTGGTCAAGCCACCATTGTTGCAAACAAGCT
1 --TGGACAAGCCACCAAAATTGCAAACAAGCT
23067202 ACTAATAATG
Statistics
Matches: 91, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
39 1 0.01
40 64 0.70
41 1 0.01
42 25 0.27
ACGTcount: A:0.38, C:0.24, G:0.19, T:0.20
Consensus pattern (40 bp):
TGGACAAGCCACCAAAATTGCAAACAAGCTGCCAGTAATA
Found at i:23067118 original size:20 final size:20
Alignment explanation
Indices: 23067093--23067158 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 20
23067083 AGTACTATGG
23067093 ACAAGCCACCAAAATTGCAA
1 ACAAGCCACCAAAATTGCAA
* * * ***
23067113 ACAAGCTAGCAATATTGTGG
1 ACAAGCCACCAAAATTGCAA
*
23067133 ACAAGCCATCAAAATTGCAA
1 ACAAGCCACCAAAATTGCAA
23067153 ACAAGC
1 ACAAGC
23067159 TGCCAGTAAT
Statistics
Matches: 34, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.45, C:0.24, G:0.15, T:0.15
Consensus pattern (20 bp):
ACAAGCCACCAAAATTGCAA
Found at i:23068614 original size:13 final size:13
Alignment explanation
Indices: 23068596--23068638 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
23068586 TTAGCAATGT
23068596 TTTTAAAAAGTGC
1 TTTTAAAAAGTGC
*
23068609 TTTTAAAAGGTGC
1 TTTTAAAAAGTGC
* **
23068622 TGTGGAAAAGTGC
1 TTTTAAAAAGTGC
23068635 TTTT
1 TTTT
23068639 GAGAAGTATT
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (13 bp):
TTTTAAAAAGTGC
Found at i:23078740 original size:39 final size:38
Alignment explanation
Indices: 23078674--23078770 Score: 115
Period size: 39 Copynumber: 2.5 Consensus size: 38
23078664 CGGATAGATT
* * *
23078674 CGATGAGGTACTGGGTACCAACTTTACTTCG-GCTAGGC
1 CGATGAGGCACTGGGTGCCAACTTTACTTCGAACTA-GC
* * *
23078712 CGATGAGACACTGGGTGTCAACTATTACTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACT-TTACTTCGAACTAGC
23078751 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
23078771 TATTGGTGTG
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
38 19 0.39
39 27 0.55
40 3 0.06
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (38 bp):
CGATGAGGCACTGGGTGCCAACTTTACTTCGAACTAGC
Found at i:23083532 original size:5 final size:5
Alignment explanation
Indices: 23083522--23083557 Score: 63
Period size: 5 Copynumber: 7.0 Consensus size: 5
23083512 AATAATTAAG
23083522 TATAT TATAT TATAT TATAT TATAT TATTAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TA-TAT TATAT
23083558 AACAGAAACA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 25 0.83
6 5 0.17
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TATAT
Found at i:23083625 original size:31 final size:30
Alignment explanation
Indices: 23083590--23083650 Score: 70
Period size: 30 Copynumber: 2.0 Consensus size: 30
23083580 GAAACAGAAT
*
23083590 GAAAGCAAACGAAACAGAGA-AGAACAGGGGA
1 GAAAG-AAACGAAACA-AGACAGAAAAGGGGA
* *
23083621 GAAAGAAAGGAAAGAAGACAGAAAAGGGGA
1 GAAAGAAACGAAACAAGACAGAAAAGGGGA
23083651 AATAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
29 3 0.12
30 18 0.69
31 5 0.19
ACGTcount: A:0.57, C:0.08, G:0.34, T:0.00
Consensus pattern (30 bp):
GAAAGAAACGAAACAAGACAGAAAAGGGGA
Found at i:23086334 original size:46 final size:46
Alignment explanation
Indices: 23086267--23086438 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
23086257 AACCCGCCCC
*
23086267 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
** *
23086313 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-AAAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * ** *
23086361 TCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
23086406 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
23086439 ATGCTCAACC
Statistics
Matches: 102, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 2 0.02
44 1 0.01
45 2 0.02
46 59 0.58
47 27 0.26
48 3 0.03
49 1 0.01
50 2 0.02
51 3 0.03
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:23086379 original size:93 final size:93
Alignment explanation
Indices: 23086272--23086442 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
23086262 GCCCCTAAGT
** *
23086272 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23086337 CGAGTTCGGATGCCTAGTTAAATTTCAC
66 CGAGTTCGGATGCCTAGTTAAATTTCAC
*
23086365 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
23086430 CGAGTTCGGATGC
66 CGAGTTCGGATGC
23086443 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTAAATTTCAC
Found at i:23087651 original size:46 final size:46
Alignment explanation
Indices: 23087584--23087759 Score: 175
Period size: 46 Copynumber: 3.8 Consensus size: 46
23087574 TATTTGGGCA
23087584 TCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* * *
23087630 TCCGAACTCGTTGAGTTGAGTCCGAGTT---C-GTGAGATG-TAACTAGG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATG-GATGCGAA-T--G
* *
23087675 CATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
* * *
23087723 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCC-GAACTCATTGAGTTGAGTCCGAGTTCACCTATGG
23087760 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 10, Indels: 24
0.76 0.07 0.17
Matches are distributed among these distances:
42 4 0.04
43 6 0.06
45 3 0.03
46 59 0.55
47 27 0.25
48 1 0.01
50 4 0.04
51 4 0.04
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATG
Found at i:23087739 original size:93 final size:93
Alignment explanation
Indices: 23087580--23087751 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
23087570 AGGATATTTG
*
23087580 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAG
23087645 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
23087673 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGA
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCC-GAACTCGTTGA
23087737 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
23087752 ACTTATGGGC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:23088383 original size:33 final size:33
Alignment explanation
Indices: 23088346--23088445 Score: 86
Period size: 31 Copynumber: 3.2 Consensus size: 33
23088336 TGAATGAATA
23088346 ATGTACAATTATTTGTAGTTGCTTCAGCAATGC
1 ATGTACAATTATTTGTAGTTGCTTCAGCAATGC
* * *** *
23088379 ATGTAGC-A-T-TCTGTAGCT-CAAAATG-AAT-A
1 ATGTA-CAATTATTTGTAGTTGCTTCA-GCAATGC
23088408 ATGTACAATTATTTGTAGTTGCTTCAGCAATGC
1 ATGTACAATTATTTGTAGTTGCTTCAGCAATGC
23088441 ATGTA
1 ATGTA
23088446 GCATTCTGTA
Statistics
Matches: 47, Mismatches: 12, Indels: 16
0.63 0.16 0.21
Matches are distributed among these distances:
28 1 0.02
29 6 0.13
30 6 0.13
31 16 0.34
32 6 0.13
33 11 0.23
34 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37
Consensus pattern (33 bp):
ATGTACAATTATTTGTAGTTGCTTCAGCAATGC
Found at i:23088394 original size:31 final size:31
Alignment explanation
Indices: 23088359--23088456 Score: 78
Period size: 31 Copynumber: 3.2 Consensus size: 31
23088349 TACAATTATT
23088359 TGTAGTTGCTTCAGCAATGCATGTAGCATTC
1 TGTAGTTGCTTCAGCAATGCATGTAGCATTC
* *** * *
23088390 TGTAGCT-CAAAATG-AAT-AATGTA-CAATTATT
1 TGTAGTTGCTTCA-GCAATGCATGTAGC-A-T-TC
23088421 TGTAGTTGCTTCAGCAATGCATGTAGCATTC
1 TGTAGTTGCTTCAGCAATGCATGTAGCATTC
23088452 TGTAG
1 TGTAG
23088457 CTCAAACCTG
Statistics
Matches: 47, Mismatches: 12, Indels: 16
0.63 0.16 0.21
Matches are distributed among these distances:
28 1 0.02
29 6 0.13
30 6 0.13
31 21 0.45
32 6 0.13
33 6 0.13
34 1 0.02
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (31 bp):
TGTAGTTGCTTCAGCAATGCATGTAGCATTC
Found at i:23088408 original size:62 final size:62
Alignment explanation
Indices: 23088338--23088462 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
23088328 TGTTTGGATG
23088338 AATGAATAATGTACAATTATTTGTAGTTGCTTCAGCAATGCATGTAGCATTCTGTAGCTCAA
1 AATGAATAATGTACAATTATTTGTAGTTGCTTCAGCAATGCATGTAGCATTCTGTAGCTCAA
23088400 AATGAATAATGTACAATTATTTGTAGTTGCTTCAGCAATGCATGTAGCATTCTGTAGCTCAA
1 AATGAATAATGTACAATTATTTGTAGTTGCTTCAGCAATGCATGTAGCATTCTGTAGCTCAA
23088462 A
1 A
23088463 CCTGAAGACT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (62 bp):
AATGAATAATGTACAATTATTTGTAGTTGCTTCAGCAATGCATGTAGCATTCTGTAGCTCAA
Found at i:23101111 original size:18 final size:17
Alignment explanation
Indices: 23101090--23101133 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
23101080 ATTGCATGGG
23101090 ATGCATGGTTCACATGAA
1 ATGCATGGTT-ACATGAA
*
23101108 ATGCATGGGTTGCATGAA
1 ATGCAT-GGTTACATGAA
23101126 ATGCATGG
1 ATGCATGG
23101134 AACGTATGGC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 2 0.08
18 18 0.75
19 4 0.17
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.27
Consensus pattern (17 bp):
ATGCATGGTTACATGAA
Found at i:23101180 original size:45 final size:45
Alignment explanation
Indices: 23101130--23101233 Score: 136
Period size: 45 Copynumber: 2.3 Consensus size: 45
23101120 CATGAAATGC
* * *
23101130 ATGGAACGTATGGCACGCATGGAGTGCATGAAATACATGTTTTGT
1 ATGGAACGTATGGAACGCATGGAATACATGAAATACATGTTTTGT
** * *
23101175 ATGGAACACATGGAATGCATGGAATACATGAAATTCATGTTTTGT
1 ATGGAACGTATGGAACGCATGGAATACATGAAATACATGTTTTGT
*
23101220 ATGGAATGTATGGA
1 ATGGAACGTATGGA
23101234 GTGCATGAAC
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.33, C:0.11, G:0.27, T:0.30
Consensus pattern (45 bp):
ATGGAACGTATGGAACGCATGGAATACATGAAATACATGTTTTGT
Found at i:23101213 original size:18 final size:18
Alignment explanation
Indices: 23101175--23101213 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
23101165 CATGTTTTGT
*
23101175 ATGGAACACATGGAATGC
1 ATGGAACACATGAAATGC
* *
23101193 ATGGAATACATGAAATTC
1 ATGGAACACATGAAATGC
23101211 ATG
1 ATG
23101214 TTTTGTATGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.41, C:0.13, G:0.23, T:0.23
Consensus pattern (18 bp):
ATGGAACACATGAAATGC
Found at i:23102314 original size:22 final size:23
Alignment explanation
Indices: 23102289--23102334 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
23102279 CAACCAAATC
23102289 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
23102311 AATTCATACATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
23102334 A
1 A
23102335 CGTCATCACA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 6 0.27
23 15 0.68
24 1 0.05
ACGTcount: A:0.48, C:0.11, G:0.04, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:23102340 original size:23 final size:24
Alignment explanation
Indices: 23102295--23102347 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
23102285 AATCAATTCA
*
23102295 ACATATTTTCAAGATAAATTCAT-
1 ACATATTTTCAAGATAAAGTCATC
*
23102318 ACATATTTAT-AAGATAACGTCATC
1 ACATATTT-TCAAGATAAAGTCATC
23102342 ACATAT
1 ACATAT
23102348 CTAAAACCAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
23 19 0.73
24 7 0.27
ACGTcount: A:0.43, C:0.15, G:0.06, T:0.36
Consensus pattern (24 bp):
ACATATTTTCAAGATAAAGTCATC
Found at i:23107584 original size:28 final size:27
Alignment explanation
Indices: 23107527--23107678 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
23107517 TAAATTGTGC
*
23107527 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
23107554 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
23107582 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
23107609 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
23107637 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
23107664 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23107679 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:23107591 original size:55 final size:55
Alignment explanation
Indices: 23107527--23107678 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
23107517 TAAATTGTGC
*
23107527 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
23107582 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
23107637 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
23107679 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:23139461 original size:40 final size:40
Alignment explanation
Indices: 23139413--23139538 Score: 200
Period size: 40 Copynumber: 3.2 Consensus size: 40
23139403 GGACTAAGAT
23139413 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
23139453 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCCAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* * *
23139493 CCGAAGGCATTTGTGTGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
23139532 CTGAAGG
1 CCGAAGG
23139539 TACTTGGATT
Statistics
Matches: 80, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 13 0.16
40 67 0.84
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:23144079 original size:24 final size:22
Alignment explanation
Indices: 23144052--23144105 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
23144042 CACTCTCTTC
*
23144052 TTTTCTTTCATTCTTCTCTTGTGT
1 TTTTCTTTCACTC-TCT-TTGTGT
*
23144076 TTTTAC-CTCACTCTCTTTGTGT
1 TTTT-CTTTCACTCTCTTTGTGT
23144098 TTTTCTTT
1 TTTTCTTT
23144106 TTTTTTTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
21 1 0.04
22 11 0.44
23 3 0.12
24 9 0.36
25 1 0.04
ACGTcount: A:0.06, C:0.22, G:0.07, T:0.65
Consensus pattern (22 bp):
TTTTCTTTCACTCTCTTTGTGT
Found at i:23147536 original size:9 final size:9
Alignment explanation
Indices: 23147518--23147574 Score: 51
Period size: 9 Copynumber: 6.3 Consensus size: 9
23147508 AACATATTGT
*
23147518 ATGGGATGC
1 ATGGAATGC
**
23147527 ATGGTTTGC
1 ATGGAATGC
*
23147536 ATGAAATGC
1 ATGGAATGC
**
23147545 ATGGGTTGC
1 ATGGAATGC
23147554 ATGGAATGC
1 ATGGAATGC
*
23147563 ATGAAATGC
1 ATGGAATGC
23147572 ATG
1 ATG
23147575 TTTTGCATGG
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
9 37 1.00
ACGTcount: A:0.28, C:0.11, G:0.33, T:0.28
Consensus pattern (9 bp):
ATGGAATGC
Found at i:23147548 original size:27 final size:27
Alignment explanation
Indices: 23147518--23147611 Score: 98
Period size: 27 Copynumber: 3.5 Consensus size: 27
23147508 AACATATTGT
* *
23147518 ATGGGATGCATGGTTTGCATGAAATGC
1 ATGGGTTGCATGGTATGCATGAAATGC
*
23147545 ATGGGTTGCATGGAATGCATGAAATGC
1 ATGGGTTGCATGGTATGCATGAAATGC
** ** *
23147572 ATGTTTTGCATGGTGCGCATGGAATGC
1 ATGGGTTGCATGGTATGCATGAAATGC
**
23147599 ATGTTTTGCATGG
1 ATGGGTTGCATGG
23147612 AACACATGGA
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.23, C:0.12, G:0.33, T:0.32
Consensus pattern (27 bp):
ATGGGTTGCATGGTATGCATGAAATGC
Found at i:23147609 original size:18 final size:18
Alignment explanation
Indices: 23147518--23147613 Score: 84
Period size: 18 Copynumber: 5.3 Consensus size: 18
23147508 AACATATTGT
*
23147518 ATGGGATGCATGGTTTGC
1 ATGGAATGCATGGTTTGC
* *
23147536 ATGAAATGCATGGGTTGC
1 ATGGAATGCATGGTTTGC
***
23147554 ATGGAATGCATGAAATGC
1 ATGGAATGCATGGTTTGC
*** **
23147572 ATGTTTTGCATGGTGCGC
1 ATGGAATGCATGGTTTGC
*
23147590 ATGGAATGCATGTTTTGC
1 ATGGAATGCATGGTTTGC
23147608 ATGGAA
1 ATGGAA
23147614 CACATGGAGT
Statistics
Matches: 58, Mismatches: 20, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 58 1.00
ACGTcount: A:0.25, C:0.11, G:0.32, T:0.31
Consensus pattern (18 bp):
ATGGAATGCATGGTTTGC
Found at i:23147619 original size:27 final size:27
Alignment explanation
Indices: 23147534--23147628 Score: 109
Period size: 27 Copynumber: 3.5 Consensus size: 27
23147524 TGCATGGTTT
** *
23147534 GCATGAAATGCATGGGTTGCATGGAAT
1 GCATGAAATGCATGTTTTGCATGGAAC
**
23147561 GCATGAAATGCATGTTTTGCATGGTGC
1 GCATGAAATGCATGTTTTGCATGGAAC
*
23147588 GCATGGAATGCATGTTTTGCATGGAAC
1 GCATGAAATGCATGTTTTGCATGGAAC
* * *
23147615 ACATGGAGTGCATG
1 GCATGAAATGCATG
23147629 CTCAAACTCG
Statistics
Matches: 58, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 58 1.00
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.28
Consensus pattern (27 bp):
GCATGAAATGCATGTTTTGCATGGAAC
Found at i:23150422 original size:10 final size:10
Alignment explanation
Indices: 23150409--23150434 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
23150399 TTAAAATATA
23150409 TTATAAAATT
1 TTATAAAATT
23150419 TTATAAAATT
1 TTATAAAATT
23150429 TTATAA
1 TTATAA
23150435 TTTTTTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (10 bp):
TTATAAAATT
Found at i:23151171 original size:22 final size:22
Alignment explanation
Indices: 23151144--23151189 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
23151134 TTCTTTTCTA
23151144 TTCTTTATTTAT-TATTATTTTC
1 TTCTTT-TTTATCTATTATTTTC
* *
23151166 TTCTTTTTTTTCTATTTTTTTC
1 TTCTTTTTTATCTATTATTTTC
23151188 TT
1 TT
23151190 TTATAACATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.78
Consensus pattern (22 bp):
TTCTTTTTTATCTATTATTTTC
Found at i:23155760 original size:46 final size:45
Alignment explanation
Indices: 23155707--23155882 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 45
23155697 TATTTGGGCA
23155707 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * * *
23155753 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTGGGCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-TGCGAAG
* *
23155800 T-CTAAGCTTGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * * *
23155846 CCCGAGCTCGTTGATTTGAATCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23155883 GCGGGTTACA
Statistics
Matches: 102, Mismatches: 21, Indels: 14
0.74 0.15 0.10
Matches are distributed among these distances:
44 4 0.04
45 1 0.01
46 63 0.62
47 29 0.28
48 1 0.01
49 4 0.04
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:23167172 original size:27 final size:27
Alignment explanation
Indices: 23167142--23167195 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
23167132 TTCTACAACC
* *
23167142 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
23167169 CATGTAACAATAATTTTCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
23167196 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.06, T:0.41
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:23168200 original size:21 final size:21
Alignment explanation
Indices: 23168176--23168229 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
23168166 GTTGTTAAGA
*
23168176 AGGAAGTTACTGCTGCAGAAG
1 AGGAAGTTACTGCTGAAGAAG
**
23168197 AGGAAGTTGTTGCTGAAGAAG
1 AGGAAGTTACTGCTGAAGAAG
*
23168218 AAGAAGTTACTG
1 AGGAAGTTACTG
23168230 AGAATGAAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.35, C:0.09, G:0.33, T:0.22
Consensus pattern (21 bp):
AGGAAGTTACTGCTGAAGAAG
Found at i:23174804 original size:23 final size:23
Alignment explanation
Indices: 23174775--23174818 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
23174765 TATACATGAA
23174775 AAATGATGAT-ACATGATATATGG
1 AAATGAT-ATCACATGATATATGG
*
23174798 AAATGATATCACTTGATATAT
1 AAATGATATCACATGATATAT
23174819 TGAAGCATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.43, C:0.07, G:0.16, T:0.34
Consensus pattern (23 bp):
AAATGATATCACATGATATATGG
Found at i:23179446 original size:40 final size:40
Alignment explanation
Indices: 23179360--23179656 Score: 456
Period size: 40 Copynumber: 7.5 Consensus size: 40
23179350 AAGCCAAGTA
* * * * * *
23179360 CCTTCGGGATTTA-ACCGGATATAGCT-ACTTGCTCGAATA
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
23179399 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
23179439 CCATCGGGACTGAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
23179479 CCTTCGGGACTTAGCCCGAATATGGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
23179519 CCTTCGGGATTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
23179559 CCTTC-GGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
23179598 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
23179638 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
23179657 TTATCATCCA
Statistics
Matches: 237, Mismatches: 18, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 50 0.21
40 187 0.79
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:23179649 original size:159 final size:159
Alignment explanation
Indices: 23179360--23179655 Score: 488
Period size: 159 Copynumber: 1.9 Consensus size: 159
23179350 AAGCCAAGTA
* * *
23179360 CCTTCGGGATTTAACCGGATATAGCTACTTGCTCGAATACCTTCGGGACATAGCCCGGATATAGT
1 CCTTCGGGATTTAACCGGATATAGCTACTCGCACAAATACCTTCGGGACATAGCCCGGATATAGT
23179425 AACTCGCACAAATGCCATCGGGACTGAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACT
66 AACTCGCACAAATGCCATCGGGACTGAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACT
23179490 TAGCCCGAATATGGTAACTCGCACAAATG
131 TAGCCCGAATATGGTAACTCGCACAAATG
* * *
23179519 CCTTCGGGATTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTC-GGACTTAGCCCGGATATA
1 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCACAAATACCTTCGGGACATAGCCCGGATATA
* *
23179582 GTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA
64 GTAACTCGCACAAATGCCATCGGGACTGAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGA
23179647 CTTAGCCCG
129 CTTAGCCCG
23179656 GTTATCATCC
Statistics
Matches: 127, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
159 103 0.81
160 24 0.19
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (159 bp):
CCTTCGGGATTTAACCGGATATAGCTACTCGCACAAATACCTTCGGGACATAGCCCGGATATAGT
AACTCGCACAAATGCCATCGGGACTGAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACT
TAGCCCGAATATGGTAACTCGCACAAATG
Found at i:23187111 original size:34 final size:35
Alignment explanation
Indices: 23187069--23187351 Score: 113
Period size: 40 Copynumber: 7.4 Consensus size: 35
23187059 CGGGATTTAA
* *
23187069 CCGGATATAGCTACTCGAATACCTTC-GGACATAG-
1 CCGGATATAGCTA-ACAAATACCTTCGGGACATAGC
* *
23187103 CCGGATATAGCTAACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGCTAACAAATACCTTCGGGACATAGC
* * * *
23187138 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAG---CT--AACAAATACCTTCGGGACATAGC
* * * *
23187178 CCGGATATGGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA---TAGCT--AACAAATACCTTCGGGACATAGC
* * * *
23187218 CCGGATATGGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATA---TAGCT--AACAAATACCTTCGGGACATAGC
* * *
23187258 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAG---CT--AACAAATACCTTCGGGACATAGC
* * *
23187298 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAG---CT--AACAAATACCTTCGGGACATAGC
23187338 CCGGATATAG-TAAC
1 CCGGATATAGCTAAC
23187352 TCGCACAAAT
Statistics
Matches: 226, Mismatches: 10, Indels: 26
0.86 0.04 0.10
Matches are distributed among these distances:
33 9 0.04
34 22 0.10
35 10 0.04
36 1 0.00
37 2 0.01
38 2 0.01
40 178 0.79
43 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.23, T:0.23
Consensus pattern (35 bp):
CCGGATATAGCTAACAAATACCTTCGGGACATAGC
Found at i:23187171 original size:40 final size:40
Alignment explanation
Indices: 23187116--23187381 Score: 505
Period size: 40 Copynumber: 6.7 Consensus size: 40
23187106 GATATAGCTA
23187116 ACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGC
1 ACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGC
* *
23187156 ACAAATGCCTTCGGGACTTAACCCGGATATGGTAACTCGC
1 ACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGC
*
23187196 ACAAATGCCTTCGGGACTTAGCCCGGATATGGTAACTCGC
1 ACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGC
23187236 ACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGC
1 ACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGC
23187276 ACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGC
1 ACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGC
23187316 ACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGC
1 ACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGC
23187356 ACAAATGCCTTCGGGACTTAGCCCGG
1 ACAAATGCCTTCGGGACTTAGCCCGG
23187382 TTATCATCCA
Statistics
Matches: 222, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 222 1.00
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
ACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGC
Found at i:23190962 original size:37 final size:37
Alignment explanation
Indices: 23190901--23190979 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
23190891 TTATTACGAA
* * *
23190901 GTCTTACCCAGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
* *
23190938 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
23190975 GTCTT
1 GTCTT
23190980 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
Found at i:23191321 original size:49 final size:49
Alignment explanation
Indices: 23191098--23191342 Score: 367
Period size: 47 Copynumber: 5.1 Consensus size: 49
23191088 CCCTTCGAGA
* * * * *
23191098 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23191145 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23191192 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23191239 CTTATCACATATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23191290 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23191339 CTTA
1 CTTA
23191343 CTATCATTTC
Statistics
Matches: 183, Mismatches: 9, Indels: 10
0.91 0.04 0.05
Matches are distributed among these distances:
46 1 0.01
47 90 0.49
49 45 0.25
51 47 0.26
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:23197699 original size:23 final size:23
Alignment explanation
Indices: 23197670--23197713 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
23197660 AATTCATGAA
23197670 AAATGATGAT-ACATGATATATGG
1 AAATGAT-ATCACATGATATATGG
*
23197693 AAATGATATCACTTGATATAT
1 AAATGATATCACATGATATAT
23197714 TAAAGCATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.43, C:0.07, G:0.16, T:0.34
Consensus pattern (23 bp):
AAATGATATCACATGATATATGG
Found at i:23207015 original size:48 final size:48
Alignment explanation
Indices: 23206975--23207242 Score: 335
Period size: 48 Copynumber: 5.6 Consensus size: 48
23206965 ATCGGTACTA
* * * *
23206975 ATGCCATGTCCCAGACATGGTCTTACACTTGTACAGATATCAATGTTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAATGCTG
23207023 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAA--CATCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAATGC-T-G
* *
23207071 ATGCCATGTCCCATACATGGTCTTACACTGGCACACATATCAACG-TCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAATGCT-G
* * * * *
23207119 CTACCATGTCCCAGACATGGTTTTACACTGGCACACATATCAACGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAATGCTG
* * * *
23207167 ATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCTGATGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATC-AATGCTG
*
23207216 ATGCCATGTCCCAGACATAGTCTTACA
1 ATGCCATGTCCCAGACATGGTCTTACA
23207243 TGGGATCTTA
Statistics
Matches: 194, Mismatches: 20, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
47 1 0.01
48 163 0.84
49 30 0.15
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGGCACACATATCAATGCTG
Found at i:23207145 original size:144 final size:145
Alignment explanation
Indices: 23206978--23207242 Score: 381
Period size: 144 Copynumber: 1.8 Consensus size: 145
23206968 GGTACTAATG
* * * * **
23206978 CCATGTCCCAGACATGGTCTTACACTTGTACAGATATCAATGTTGATGCCATGTCCCAGACATGG
1 CCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACGCCGATGCCATGTCCCAGACATGG
* *
23207043 TCTTACACTGGCACACATATCAACAT-C-GATGCCATGTCCCATACATGGTCTTACACTGGCACA
66 TCTTACACTGGCACACATATC-ACATGCTGATGCCATGTCCCAGACATAGTCTTACACTGGCACA
23207106 CATATCAACGTCGCTA
130 CATATCAACGTCGCTA
*
23207122 CCATGTCCCAGACATGGTTTTACACTGGCACACATATCAACGCCGATGCCATGTCCCAGACATGG
1 CCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACGCCGATGCCATGTCCCAGACATGG
* * * **
23207187 TCTTACACTGGCTCTCATCTCTGATGCTGATGCCATGTCCCAGACATAGTCTTACA
66 TCTTACACTGGCACACATATCACATGCTGATGCCATGTCCCAGACATAGTCTTACA
23207243 TGGGATCTTA
Statistics
Matches: 105, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
143 2 0.02
144 77 0.73
145 26 0.25
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.26
Consensus pattern (145 bp):
CCATGTCCCAGACATGGTCTTACACTGGCACACATATCAACGCCGATGCCATGTCCCAGACATGG
TCTTACACTGGCACACATATCACATGCTGATGCCATGTCCCAGACATAGTCTTACACTGGCACAC
ATATCAACGTCGCTA
Found at i:23219642 original size:27 final size:26
Alignment explanation
Indices: 23219594--23219759 Score: 161
Period size: 27 Copynumber: 6.2 Consensus size: 26
23219584 AGGAAGCGTC
* * *
23219594 CTGGTGGCTATGCCATAAATATCTGAT
1 CTGGTGGCTCTGCCA-CATTATCTGAT
* *
23219621 CTGGTGGCTCTGGCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
23219648 CTGGTGGCTCTGCCACGATTATCTAAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* * *
23219675 CTGGTGACTCTGCCACGTATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
23219702 CTAGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
23219730 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
23219756 CTGG
1 CTGG
23219760 CAGCCATGCT
Statistics
Matches: 114, Mismatches: 20, Indels: 11
0.79 0.14 0.08
Matches are distributed among these distances:
26 7 0.06
27 90 0.79
28 17 0.15
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:23219677 original size:54 final size:54
Alignment explanation
Indices: 23219594--23219759 Score: 217
Period size: 54 Copynumber: 3.1 Consensus size: 54
23219584 AGGAAGCGTC
* ** * * * *
23219594 CTGGTGGCTATGCCATAAATATCTGATCTGGTGGCTCTGGCACATATATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTAATCTGGTGACTCTGCCACATATATCTGTT
*
23219648 CTGGTGGCTCTGCCACGATTATCTAATCTGGTGACTCTGCCACGTATATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTAATCTGGTGACTCTGCCACATATATCTGTT
* * *
23219702 CTAGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTCTGCCACGATTATCT-AATCTGGTGACTCTGCCACATATATCTGTT
23219756 CTGG
1 CTGG
23219760 CAGCCATGCT
Statistics
Matches: 98, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
54 80 0.82
55 18 0.18
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTCTGCCACGATTATCTAATCTGGTGACTCTGCCACATATATCTGTT
Found at i:23223385 original size:33 final size:32
Alignment explanation
Indices: 23223334--23223425 Score: 94
Period size: 33 Copynumber: 2.8 Consensus size: 32
23223324 GTTTTCTTTG
**
23223334 TGCCATAGTCCAACTATGGTCTTACAAGTGAA
1 TGCCATAACCCAACTATGGTCTTACAAGTGAA
* * **
23223366 TTTCCATAACCCAATTATGGTCTTATCATTTGAA
1 -TGCCATAACCCAACTATGGTCTTA-CAAGTGAA
* *
23223400 TGCCATAACCTAGCTATGGTCTTACA
1 TGCCATAACCCAACTATGGTCTTACA
23223426 TACAAATACT
Statistics
Matches: 48, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
32 2 0.04
33 40 0.83
34 6 0.12
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (32 bp):
TGCCATAACCCAACTATGGTCTTACAAGTGAA
Done.