Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 76 of 295
Found at i:23676130 original size:15 final size:15
Alignment explanation
Indices: 23676075--23676132 Score: 80
Period size: 15 Copynumber: 3.8 Consensus size: 15
23676065 TCATATATAT
23676075 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
*
23676091 TATAAATTTAATCAA
1 TATAAATTCAATCAA
* *
23676106 AATAATTTCAATCAA
1 TATAAATTCAATCAA
23676121 TATAAATTCAAT
1 TATAAATTCAAT
23676133 AAATTCATCG
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
15 32 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:23677411 original size:5 final size:5
Alignment explanation
Indices: 23677398--23677459 Score: 106
Period size: 5 Copynumber: 12.2 Consensus size: 5
23677388 TTCTTTAGTT
*
23677398 TATATA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TGTAA TATAA
1 TATA-A TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA
23677449 TATAA TATAA T
1 TATAA TATAA T
23677460 TAAAACATAA
Statistics
Matches: 54, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
5 50 0.93
6 4 0.07
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (5 bp):
TATAA
Found at i:23680812 original size:13 final size:13
Alignment explanation
Indices: 23680794--23680818 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23680784 GTTTATTAAC
23680794 CCCCAACAGACTG
1 CCCCAACAGACTG
23680807 CCCCAACAGACT
1 CCCCAACAGACT
23680819 CACCACTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.48, G:0.12, T:0.08
Consensus pattern (13 bp):
CCCCAACAGACTG
Found at i:23690703 original size:11 final size:11
Alignment explanation
Indices: 23690687--23690723 Score: 65
Period size: 11 Copynumber: 3.4 Consensus size: 11
23690677 AAGGATCATA
23690687 TGAGGGTTCTG
1 TGAGGGTTCTG
23690698 TGAGGGTTCTG
1 TGAGGGTTCTG
*
23690709 TGATGGTTCTG
1 TGAGGGTTCTG
23690720 TGAG
1 TGAG
23690724 TACCCTATGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.11, C:0.08, G:0.43, T:0.38
Consensus pattern (11 bp):
TGAGGGTTCTG
Found at i:23700290 original size:20 final size:19
Alignment explanation
Indices: 23700254--23700292 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
23700244 CCTTCAAACT
*
23700254 TTTTTTAAAATTAATAAAA
1 TTTTTAAAAATTAATAAAA
*
23700273 TTTTTAAAAAGTTCATAAAA
1 TTTTTAAAAA-TTAATAAAA
23700293 AAAACTAATC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (19 bp):
TTTTTAAAAATTAATAAAA
Found at i:23704681 original size:11 final size:12
Alignment explanation
Indices: 23704667--23704715 Score: 66
Period size: 11 Copynumber: 4.2 Consensus size: 12
23704657 AAATAAATAT
23704667 AAATTAT-TAAA
1 AAATTATGTAAA
23704678 AAATTAT-TAAA
1 AAATTATGTAAA
**
23704689 AAATTATGTTGA
1 AAATTATGTAAA
23704701 AAATTATGTAAA
1 AAATTATGTAAA
23704713 AAA
1 AAA
23704716 CTCAACAAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
11 18 0.55
12 15 0.45
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (12 bp):
AAATTATGTAAA
Found at i:23705244 original size:13 final size:12
Alignment explanation
Indices: 23705215--23705245 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
23705205 TTAAATTTTT
23705215 TAAAAATTACAA
1 TAAAAATTACAA
*
23705227 TAAAAATTACAG
1 TAAAAATTACAA
23705239 TAAAAAT
1 TAAAAAT
23705246 ATATATATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (12 bp):
TAAAAATTACAA
Found at i:23712499 original size:30 final size:30
Alignment explanation
Indices: 23712463--23712522 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
23712453 TTCCCGAGCC
*
23712463 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
23712493 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
23712523 CTTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:23717463 original size:22 final size:20
Alignment explanation
Indices: 23717430--23717518 Score: 90
Period size: 21 Copynumber: 4.2 Consensus size: 20
23717420 TTTATAATAT
23717430 TATTTTTTAAAATTTTAAAAA
1 TATTTTTTAAAA-TTTAAAAA
*
23717451 TATTTTTTAAAAATTTAAATAT
1 TATTTTTT-AAAATTTAAA-AA
* *
23717473 TATTTTTTTAAATTTAAATA
1 TATTTTTTAAAATTTAAAAA
*
23717493 TATATTTTTAATAATAT-AAAA
1 TAT-TTTTTAA-AATTTAAAAA
23717514 TATTT
1 TATTT
23717519 AAAATATATT
Statistics
Matches: 57, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
20 5 0.09
21 35 0.61
22 17 0.30
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
TATTTTTTAAAATTTAAAAA
Found at i:23717472 original size:43 final size:43
Alignment explanation
Indices: 23717387--23717517 Score: 131
Period size: 43 Copynumber: 3.0 Consensus size: 43
23717377 TTATTATTGG
* * * *
23717387 TTTTATAAAATTT-AAAATGTATATTTAAAATGTTTTATAATATTA
1 TTTTTTAAAATTTAAAAATATATTTTTAAAA--ATTTA-AATATTA
23717432 TTTTTTAAAATTTTAAAAATAT-TTTTTAAAAATTTAAATATTA
1 TTTTTTAAAA-TTTAAAAATATATTTTTAAAAATTTAAATATTA
* * * *
23717475 TTTTTTTAAATTTAAATATATATTTTTAATAATATAAAATATT
1 TTTTTTAAAATTTAAAAATATATTTTTAAAAAT-TTAAATATT
23717518 TAAAATATAT
Statistics
Matches: 74, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
42 10 0.14
43 26 0.35
44 12 0.16
45 9 0.12
46 11 0.15
47 6 0.08
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (43 bp):
TTTTTTAAAATTTAAAAATATATTTTTAAAAATTTAAATATTA
Found at i:23717602 original size:22 final size:22
Alignment explanation
Indices: 23717576--23717641 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 22
23717566 TTATAATATG
*
23717576 TTAAATGTATATTTTTAAAATT
1 TTAAATATATATTTTTAAAATT
* *
23717598 TTAAATTTAAACTTATTT--AATT
1 TTAAATATATA-TT-TTTAAAATT
*
23717620 TTAAATATATTTTTTTAAAATT
1 TTAAATATATATTTTTAAAATT
23717642 ATTATTTTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
20 3 0.09
21 2 0.06
22 25 0.71
23 2 0.06
24 3 0.09
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (22 bp):
TTAAATATATATTTTTAAAATT
Found at i:23717625 original size:44 final size:44
Alignment explanation
Indices: 23717440--23717659 Score: 120
Period size: 44 Copynumber: 5.0 Consensus size: 44
23717430 TATTTTTTAA
* * * *
23717440 AATTTTAAAAATAT-TTTTTAAAAAT-TTAAATATT-ATTTTTTT
1 AATTTTAAATATATATTTTTAAAATTATTAAAT-TTAAATTATTT
* * *
23717482 AAATTTAAATATATATTTTTAATAA-TATAAAATATTTAAAATATATT
1 AATTTTAAATATATATTTTTAA-AATTAT-TAA-ATTTAAATTAT-TT
* * * * *
23717529 -ATTTTAAAGATATGACCTTTCAAATTTATT--ATTT--GTT-TTAT
1 AATTTTAAATATAT-A-TTTTTAAAATTATTAAATTTAAATTATT-T
*
23717570 AATATGTTAAATGTATATTTTTAAAATT-TTAAATTTAAACTTATTT
1 AAT-T-TTAAATATATATTTTTAAAATTATTAAATTTAAA-TTATTT
* **
23717616 AATTTTAAATATATTTTTTTAAAATTATTATTTTTAAATTATTT
1 AATTTTAAATATATATTTTTAAAATTATTAAATTTAAATTATTT
23717660 TTAAAAATAT
Statistics
Matches: 133, Mismatches: 24, Indels: 40
0.68 0.12 0.20
Matches are distributed among these distances:
40 1 0.01
41 4 0.03
42 23 0.17
43 14 0.11
44 41 0.31
45 14 0.11
46 22 0.17
47 6 0.05
48 8 0.06
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (44 bp):
AATTTTAAATATATATTTTTAAAATTATTAAATTTAAATTATTT
Found at i:23717637 original size:14 final size:14
Alignment explanation
Indices: 23717618--23717661 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
23717608 ACTTATTTAA
23717618 TTTTAAATATATTT
1 TTTTAAATATATTT
23717632 TTTTAAA-ATTATTAT
1 TTTTAAATA-TATT-T
23717647 TTTTAAAT-TATTT
1 TTTTAAATATATTT
23717660 TT
1 TT
23717662 AAAAATATTC
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
13 4 0.15
14 15 0.56
15 8 0.30
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (14 bp):
TTTTAAATATATTT
Found at i:23717637 original size:30 final size:28
Alignment explanation
Indices: 23717603--23717661 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 28
23717593 AAATTTTAAA
*
23717603 TTTAAACTTATTTAATTTTAAATATATTTT
1 TTTAAAATTA-TTAATTTTAAAT-TATTTT
*
23717633 TTTAAAATTATTATTTTTAAATTATTTT
1 TTTAAAATTATTAATTTTAAATTATTTT
23717661 T
1 T
23717662 AAAAATATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
28 7 0.26
29 11 0.41
30 9 0.33
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.63
Consensus pattern (28 bp):
TTTAAAATTATTAATTTTAAATTATTTT
Found at i:23717775 original size:19 final size:19
Alignment explanation
Indices: 23717751--23717796 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
23717741 TGGAAAAAAA
23717751 TAAAAAATGATTTATTTGT
1 TAAAAAATGATTTATTTGT
*
23717770 TAAAAAAAGATTTATTTGT
1 TAAAAAATGATTTATTTGT
23717789 TAAAAAAT
1 TAAAAAAT
23717797 TTATGGCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (19 bp):
TAAAAAATGATTTATTTGT
Found at i:23717867 original size:21 final size:21
Alignment explanation
Indices: 23717816--23717868 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
23717806 TTCTTTAAAC
*
23717816 TATATATTAAAAAAATAAAAA
1 TATATATTATAAAAATAAAAA
* *
23717837 TTTATATTATAAAATTAAAAA
1 TATATATTATAAAAATAAAAA
23717858 TATATATTATA
1 TATATATTATA
23717869 GCTAGTCACA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (21 bp):
TATATATTATAAAAATAAAAA
Found at i:23720515 original size:30 final size:30
Alignment explanation
Indices: 23720474--23720575 Score: 89
Period size: 30 Copynumber: 3.4 Consensus size: 30
23720464 GTCGTAGAGC
23720474 AGTTCATATCACTCAAACATGGACGGTTCG
1 AGTTCATATCACTCAAACATGGACGGTTCG
* ** ** *
23720504 AGTTTATATCACTCGGATGTGGGCGGTTCG
1 AGTTCATATCACTCAAACATGGACGGTTCG
* * * *
23720534 TGTTCATATCACCCAAACATAGG-TGGTTCA
1 AGTTCATATCACTCAAACAT-GGACGGTTCG
*
23720564 AGTTCATTTCAC
1 AGTTCATATCAC
23720576 CCAGAGCAAC
Statistics
Matches: 54, Mismatches: 17, Indels: 2
0.74 0.23 0.03
Matches are distributed among these distances:
30 52 0.96
31 2 0.04
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (30 bp):
AGTTCATATCACTCAAACATGGACGGTTCG
Found at i:23723983 original size:33 final size:31
Alignment explanation
Indices: 23723901--23723983 Score: 76
Period size: 33 Copynumber: 2.5 Consensus size: 31
23723891 AAACATTAAT
* *
23723901 TTTTAAAATTTAAAATATAATTTAAAAAAATG
1 TTTTAAAA-TTAAAAAATAATTTAAAAAAATA
* * *
23723933 TTTGAATATCTTTAAAAATAATTTAAAAAAATTA
1 TTTTAA-A-ATTAAAAAATAATTTAAAAAAA-TA
23723967 TATTTAAAATTAAAAAA
1 T-TTTAAAATTAAAAAA
23723984 ATTAAAAATT
Statistics
Matches: 39, Mismatches: 8, Indels: 7
0.72 0.15 0.13
Matches are distributed among these distances:
32 5 0.13
33 27 0.69
34 3 0.08
35 4 0.10
ACGTcount: A:0.57, C:0.01, G:0.02, T:0.40
Consensus pattern (31 bp):
TTTTAAAATTAAAAAATAATTTAAAAAAATA
Found at i:23724115 original size:21 final size:21
Alignment explanation
Indices: 23724086--23724145 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
23724076 TTTTATTATA
*
23724086 TTAATAAAATCATATTTAAATT
1 TTAA-AAAATAATATTTAAATT
23724108 TTAAAAAATAATATTTAAATT
1 TTAAAAAATAATATTTAAATT
23724129 TT-AAAAATAAT-TTTAAA
1 TTAAAAAATAATATTTAAA
23724146 AAATATATTT
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
19 6 0.16
20 9 0.24
21 18 0.49
22 4 0.11
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
TTAAAAAATAATATTTAAATT
Found at i:23724141 original size:33 final size:33
Alignment explanation
Indices: 23724104--23724181 Score: 122
Period size: 33 Copynumber: 2.4 Consensus size: 33
23724094 ATCATATTTA
23724104 AATTTTAAAAAATAATATTT-AAATTTTAAAAAT
1 AATTTTAAAAAAT-ATATTTAAAATTTTAAAAAT
23724137 AATTTTAAAAAATATATTTAAAATTTTAAAAAT
1 AATTTTAAAAAATATATTTAAAATTTTAAAAAT
* *
23724170 AATATTATAAAA
1 AATTTTAAAAAA
23724182 CATTTAAAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
32 6 0.14
33 36 0.86
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (33 bp):
AATTTTAAAAAATATATTTAAAATTTTAAAAAT
Found at i:23724187 original size:23 final size:20
Alignment explanation
Indices: 23724144--23724194 Score: 59
Period size: 22 Copynumber: 2.5 Consensus size: 20
23724134 AATAATTTTA
*
23724144 AAAAATATATTTAAAATTTT
1 AAAAATATATTTAAAAATTT
23724164 AAAAATAATATTATAAAACATTT
1 AAAAAT-ATATT-TAAAA-ATTT
23724187 -AAAATATA
1 AAAAATATA
23724195 CATTTCAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
20 6 0.22
21 8 0.30
22 10 0.37
23 3 0.11
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (20 bp):
AAAAATATATTTAAAAATTT
Found at i:23724212 original size:23 final size:22
Alignment explanation
Indices: 23724137--23724213 Score: 79
Period size: 21 Copynumber: 3.5 Consensus size: 22
23724127 TTTTAAAAAT
23724137 AATTTTAAAAA-ATATATTTAA
1 AATTTTAAAAATATATATTTAA
23724158 AATTTTAAAAATA-ATATTATAA
1 AATTTTAAAAATATATATT-TAA
* * *
23724180 AACATTT-AAAATATACATTTCA
1 AA-TTTTAAAAATATATATTTAA
23724202 AATTTTATAAAA
1 AATTTTA-AAAA
23724214 CCAATAATAA
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
21 19 0.41
22 16 0.35
23 11 0.24
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (22 bp):
AATTTTAAAAATATATATTTAA
Found at i:23724224 original size:44 final size:43
Alignment explanation
Indices: 23724140--23724224 Score: 100
Period size: 44 Copynumber: 1.9 Consensus size: 43
23724130 TAAAAATAAT
* *
23724140 TTTAAAAAATATATTTAAAATTTTAAAAATAATATTATAAAACA
1 TTTAAAAAATACATTTAAAATTTTAAAAACAATA-TATAAAACA
* *
23724184 TTTAAAATATACATTTCAAATTTTATAAAACCAATA-ATAAA
1 TTTAAAAAATACATTTAAAATTTTA-AAAA-CAATATATAAA
23724225 TAAATAAATA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
44 27 0.77
45 4 0.11
46 4 0.11
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (43 bp):
TTTAAAAAATACATTTAAAATTTTAAAAACAATATATAAAACA
Found at i:23729445 original size:40 final size:40
Alignment explanation
Indices: 23729390--23729581 Score: 287
Period size: 40 Copynumber: 4.8 Consensus size: 40
23729380 CGGATGATAA
23729390 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
23729430 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* * *
23729470 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACCAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
* * *
23729510 CCAGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-T
* * *
23729550 CCGGGCTATGTCCCGAAGGTATTTGAGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
23729582 AGCTATATCC
Statistics
Matches: 137, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 1 0.01
40 136 0.99
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATT
Found at i:23731845 original size:46 final size:46
Alignment explanation
Indices: 23731795--23731970 Score: 201
Period size: 46 Copynumber: 3.8 Consensus size: 46
23731785 TGGTTGAGCA
*
23731795 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
23731841 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* *
23731888 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * *
23731934 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23731971 GCGGGTTACA
Statistics
Matches: 106, Mismatches: 21, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
46 71 0.67
47 35 0.33
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:23731951 original size:93 final size:93
Alignment explanation
Indices: 23731792--23731962 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
23731782 GGATGGTTGA
* *
23731792 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
23731857 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
23731885 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
23731950 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
23731963 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:23733199 original size:26 final size:27
Alignment explanation
Indices: 23733157--23733222 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 27
23733147 TGATGCAGTT
23733157 AGCCAGCCAGATACAGATA-TTGTGGCAG
1 AGCCA-CCAGA-ACAGATATTTGTGGCAG
* *
23733185 AGCCACTAGAACAGATATTTGTGGCAT
1 AGCCACCAGAACAGATATTTGTGGCAG
23733212 AGCCACCAGAA
1 AGCCACCAGAA
23733223 AGCTTCCTCC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 7 0.21
27 22 0.65
28 5 0.15
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (27 bp):
AGCCACCAGAACAGATATTTGTGGCAG
Found at i:23739411 original size:53 final size:53
Alignment explanation
Indices: 23739299--23739446 Score: 176
Period size: 53 Copynumber: 2.8 Consensus size: 53
23739289 CCATGGCAAC
* * * *
23739299 AAGTGATAAGTGATATTCGTATAAAACCATAGCTGGGCCATGGCATCGAAAAT
1 AAGTGATAAGCGATATCCGTATAAGACCATAGCTGGGCTATGGCATCGAAAAT
* * *
23739352 AAGTGATAAGCGATATCCGTATAAGACCATAGCTGGGCTATGGCTTCG-GATT
1 AAGTGATAAGCGATATCCGTATAAGACCATAGCTGGGCTATGGCATCGAAAAT
*
23739404 AAGGTGAT-A-CAAGTGATCCGTATAAGACCATAGCTGGGCTATG
1 AA-GTGATAAGCGA-T-ATCCGTATAAGACCATAGCTGGGCTATG
23739447 ATATCAGAGA
Statistics
Matches: 84, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
51 2 0.02
52 6 0.07
53 76 0.90
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (53 bp):
AAGTGATAAGCGATATCCGTATAAGACCATAGCTGGGCTATGGCATCGAAAAT
Found at i:23742029 original size:15 final size:15
Alignment explanation
Indices: 23742009--23742055 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
23741999 TAATATATAT
23742009 TTCAATCAATATAAA
1 TTCAATCAATATAAA
* * *
23742024 TTCAATCAAAATGAT
1 TTCAATCAATATAAA
23742039 TTCAATCAATATAAA
1 TTCAATCAATATAAA
23742054 TT
1 TT
23742056 TGATAAATTC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.36
Consensus pattern (15 bp):
TTCAATCAATATAAA
Found at i:23750403 original size:53 final size:54
Alignment explanation
Indices: 23750263--23750435 Score: 196
Period size: 54 Copynumber: 3.2 Consensus size: 54
23750253 GGACCATGGC
* *
23750263 AACAAGTGATAAGTGATATTCGTATAAGACCATAGCTGGGCTATGGCATC-GAAA
1 AACAAGTGATAAGCGA-ATCCGTATAAGACCATAGCTGGGCTATGGCATCGGAAA
* **
23750317 AACAAGTGATAAGCGATATCCGTATAAGACCATAGCTGGGCTATGGCTTCGGATT
1 AACAAGTGATAAGCGA-ATCCGTATAAGACCATAGCTGGGCTATGGCATCGGAAA
* * *
23750372 AA-GA-TGATACAAGTG-ATCCGTATAAGACCATAGCTGGGCTATGGCATCGGAGA
1 AACAAGTGAT--AAGCGAATCCGTATAAGACCATAGCTGGGCTATGGCATCGGAAA
23750425 AA-AA-TGATAAG
1 AACAAGTGATAAG
23750436 TGCTCCCATG
Statistics
Matches: 105, Mismatches: 11, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
51 3 0.03
53 46 0.44
54 48 0.46
55 8 0.08
ACGTcount: A:0.36, C:0.16, G:0.25, T:0.23
Consensus pattern (54 bp):
AACAAGTGATAAGCGAATCCGTATAAGACCATAGCTGGGCTATGGCATCGGAAA
Found at i:23755217 original size:18 final size:18
Alignment explanation
Indices: 23755194--23755231 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
23755184 AATTTTAAAG
23755194 TATAAAT-TTTGAAATTTT
1 TATAAATATTTG-AATTTT
23755212 TATAAATAATTTGAATTTT
1 TATAAAT-ATTTGAATTTT
23755231 T
1 T
23755232 GAAAATTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 7 0.39
20 4 0.22
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.55
Consensus pattern (18 bp):
TATAAATATTTGAATTTT
Found at i:23755244 original size:20 final size:20
Alignment explanation
Indices: 23755199--23755250 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
23755189 TAAAGTATAA
23755199 ATTTTGAAATTTTTATAAAT
1 ATTTTGAAATTTTTATAAAT
*
23755219 AATTTG-AATTTTTGA-AAATT
1 ATTTTGAAATTTTT-ATAAA-T
*
23755239 ATTTTGTAATTT
1 ATTTTGAAATTT
23755251 ATGTTGAGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
19 10 0.37
20 12 0.44
21 5 0.19
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.56
Consensus pattern (20 bp):
ATTTTGAAATTTTTATAAAT
Found at i:23757442 original size:5 final size:5
Alignment explanation
Indices: 23757432--23757456 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
23757422 ATAATCATCT
23757432 TTTTC TTTTC TTTTC TTTTC TTTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC
23757457 ACCCGACACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTC
Found at i:23761403 original size:246 final size:248
Alignment explanation
Indices: 23761001--23761450 Score: 778
Period size: 246 Copynumber: 1.8 Consensus size: 248
23760991 TATTTTTGTT
*
23761001 ATTCTTTTACCTTATTTTCTTCTTTTTATCTACATTTTTCTCCTCCTCTTTCCTCTCTTTTTCTC
1 ATTCTTTTACCTTATTTTCTTCTTTTTATCTACATTTTTCTCCTCCTCTTTCCTCTC-TTCTCTC
* * *
23761066 TTTTCTTCTCTCATTATGGGCAGCATATTCGTTTCTGCAACTTGGTTATTTAAAGTTCCTTGTAA
65 TTTTCTTCTCTCATTATGGGCAGCATATTCATCTCTGCAACTTGGTTATTTAAAGTTCATTGTAA
* *
23761131 TTATCTCGCATATATCAATCAACATTCTTTTGAGTAAAGCTGTGATATTATAAGCTTTTAATTGT
130 TTATCTCGCATATATCAATCAACATTCTTTTGAGTAAAGCTGTGATATTATAAGCTTCTAATTAT
23761196 TCTATTATGACATGCCACGTCATTTAAACTTCAAGAAAAAAATTATATTCTTCA
195 TCTATTATGACATGCCACGTCATTTAAACTTCAAGAAAAAAATTATATTCTTCA
* *
23761250 ATTCTTTTACCTTATTTTCTTCTTTTTATTTACATTTTTCTCCTTCTCTTTCCTCTC-TCTCTCT
1 ATTCTTTTACCTTATTTTCTTCTTTTTATCTACATTTTTCTCCTCCTCTTTCCTCTCTTCTCTCT
*
23761314 TTTCTTCTCTCATTAT-GGCAGCATATTCATCTCTGCAACTTGGTTATTTTAAGTTCATTGTAAT
66 TTTCTTCTCTCATTATGGGCAGCATATTCATCTCTGCAACTTGGTTATTTAAAGTTCATTGTAAT
* *
23761378 TTTCTCGCATATATCAATCAACATTCTTTTGAGTAAAGCTTTGATATTATAAGCTTCTAATTATT
131 TATCTCGCATATATCAATCAACATTCTTTTGAGTAAAGCTGTGATATTATAAGCTTCTAATTATT
23761443 CTATTATG
196 CTATTATG
23761451 GCATTCACAT
Statistics
Matches: 190, Mismatches: 11, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
246 113 0.59
247 22 0.12
249 55 0.29
ACGTcount: A:0.23, C:0.20, G:0.08, T:0.49
Consensus pattern (248 bp):
ATTCTTTTACCTTATTTTCTTCTTTTTATCTACATTTTTCTCCTCCTCTTTCCTCTCTTCTCTCT
TTTCTTCTCTCATTATGGGCAGCATATTCATCTCTGCAACTTGGTTATTTAAAGTTCATTGTAAT
TATCTCGCATATATCAATCAACATTCTTTTGAGTAAAGCTGTGATATTATAAGCTTCTAATTATT
CTATTATGACATGCCACGTCATTTAAACTTCAAGAAAAAAATTATATTCTTCA
Found at i:23763361 original size:26 final size:26
Alignment explanation
Indices: 23763332--23763383 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
23763322 GGATTTTATT
**
23763332 CTTGTAGACTAAGAAACTAAAATTAA
1 CTTGTAGAAAAAGAAACTAAAATTAA
*
23763358 CTTGTAGAAAAAGAAACTACAATTAA
1 CTTGTAGAAAAAGAAACTAAAATTAA
23763384 GGAAACTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.52, C:0.12, G:0.12, T:0.25
Consensus pattern (26 bp):
CTTGTAGAAAAAGAAACTAAAATTAA
Found at i:23771130 original size:30 final size:30
Alignment explanation
Indices: 23771094--23771192 Score: 144
Period size: 30 Copynumber: 3.3 Consensus size: 30
23771084 CTAGCCTTTG
* *
23771094 CCACCACCAACTCCACTAACCACACTTACT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
23771124 CCACCACCTACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
23771154 CCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
23771184 CTACCACCA
1 CCACCACCA
23771193 CTTGTACCTA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 63 1.00
ACGTcount: A:0.27, C:0.49, G:0.04, T:0.19
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:23771727 original size:25 final size:24
Alignment explanation
Indices: 23771662--23771776 Score: 80
Period size: 23 Copynumber: 4.9 Consensus size: 24
23771652 TTATTATTTT
*
23771662 TAATATTATATTA--TATATATTC
1 TAATACTATATTATGTATATATTC
** * *
23771684 TTTTAATATATTA-G-GTATATTC
1 TAATACTATATTATGTATATATTC
*
23771706 TAAATTCTATATTATGTATATATAT-
1 T-AATACTATATTATGTATATAT-TC
* *
23771731 T-ATACTATTTTATGTATATATCTT
1 TAATACTATATTATGTATATAT-TC
*
23771755 TAATACTATATTATTTATATAT
1 TAATACTATATTATGTATATAT
23771777 ATTTTTTCTA
Statistics
Matches: 72, Mismatches: 14, Indels: 11
0.74 0.14 0.11
Matches are distributed among these distances:
22 18 0.25
23 27 0.38
24 2 0.03
25 24 0.33
26 1 0.01
ACGTcount: A:0.37, C:0.05, G:0.03, T:0.55
Consensus pattern (24 bp):
TAATACTATATTATGTATATATTC
Found at i:23771765 original size:48 final size:48
Alignment explanation
Indices: 23771647--23771779 Score: 132
Period size: 48 Copynumber: 2.9 Consensus size: 48
23771637 CTTTTTTTTC
* * * *
23771647 TTTTAT-TAT-TATTTTTAATATTATATTATATATAT-TCTTTTAATA
1 TTTTATGTATATATCTTTAATACTATATTATATATATATATTATAATA
* * * * * *
23771692 TATTAGGTATAT-TC-TAAATTCTATATTATGTATATATATTATACTA
1 TTTTATGTATATATCTTTAATACTATATTATATATATATATTATAATA
*
23771738 TTTTATGTATATATCTTTAATACTATATTATTTATATATATT
1 TTTTATGTATATATCTTTAATACTATATTATATATATATATT
23771780 TTTTCTACAT
Statistics
Matches: 68, Mismatches: 15, Indels: 7
0.76 0.17 0.08
Matches are distributed among these distances:
45 21 0.31
46 21 0.31
47 3 0.04
48 23 0.34
ACGTcount: A:0.35, C:0.05, G:0.03, T:0.58
Consensus pattern (48 bp):
TTTTATGTATATATCTTTAATACTATATTATATATATATATTATAATA
Found at i:23771772 original size:29 final size:28
Alignment explanation
Indices: 23771717--23771846 Score: 95
Period size: 27 Copynumber: 5.0 Consensus size: 28
23771707 AAATTCTATA
*
23771717 TTATGTATATATATT-ATAC--TA-T-T
1 TTATGTATATATTTTAATACTATATTAT
23771740 TTATGTATATATCTTTAATACTATATTAT
1 TTATGTATATAT-TTTAATACTATATTAT
* ** *
23771769 TTATATATAT-TTTTTCTAC-ATGTTAT
1 TTATGTATATATTTTAATACTATATTAT
23771795 CTTATGTATATATTTTAAT--TATATTAT
1 -TTATGTATATATTTTAATACTATATTAT
* *
23771822 GTATGTAT-T-TTTT-ACACTATATTAT
1 TTATGTATATATTTTAATACTATATTAT
23771847 GTACATATTT
Statistics
Matches: 85, Mismatches: 11, Indels: 20
0.73 0.09 0.17
Matches are distributed among these distances:
23 13 0.15
24 6 0.07
25 13 0.15
26 13 0.15
27 23 0.27
28 7 0.08
29 10 0.12
ACGTcount: A:0.32, C:0.06, G:0.05, T:0.58
Consensus pattern (28 bp):
TTATGTATATATTTTAATACTATATTAT
Found at i:23771845 original size:78 final size:78
Alignment explanation
Indices: 23771717--23771860 Score: 191
Period size: 78 Copynumber: 1.8 Consensus size: 78
23771707 AAATTCTATA
* * * *
23771717 TTATGTATATATATTATACTATTTTATGTATATATCTTTAATACTATATTATTTATATATATTTT
1 TTATGTATATATATTATACTATATTATGTATATATCTTTAACACTATATTATGTACATAT-TTTT
23771782 TTCTACATGTTATC
65 TTCTACATGTTATC
* * * * *
23771796 TTATGTATATATTTTA-ATTATATTATGTATGTATTTTTTACACTATATTATGTACATATTTTTT
1 TTATGTATATATATTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTT
23771860 T
66 T
23771861 ATATTTATTT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
77 6 0.11
78 35 0.62
79 15 0.27
ACGTcount: A:0.31, C:0.06, G:0.05, T:0.58
Consensus pattern (78 bp):
TTATGTATATATATTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATTTTTT
TCTACATGTTATC
Found at i:23771847 original size:25 final size:25
Alignment explanation
Indices: 23771712--23771859 Score: 99
Period size: 25 Copynumber: 5.9 Consensus size: 25
23771702 ATTCTAAATT
* *
23771712 CTATATTATGTATATA--TATTATA
1 CTATATTATGTATATATTTTTTACA
* * * *
23771735 CTATTTTATGTATATATCTTTAATA
1 CTATATTATGTATATATTTTTTACA
*
23771760 CTATATTATTTATATATATTTTTTCTACA
1 CTATATTA--TGTATATA-TTTTT-TACA
* *
23771789 TGTTATCTTATGTATATA--TTTTA-A
1 --CTATATTATGTATATATTTTTTACA
* *
23771813 TTATATTATGTATGTATTTTTTACA
1 CTATATTATGTATATATTTTTTACA
*
23771838 CTATATTATGTACATATTTTTT
1 CTATATTATGTATATATTTTTT
23771860 TATATTTATT
Statistics
Matches: 98, Mismatches: 16, Indels: 20
0.73 0.12 0.15
Matches are distributed among these distances:
22 14 0.14
23 15 0.15
24 6 0.06
25 34 0.35
26 3 0.03
27 7 0.07
28 4 0.04
29 9 0.09
31 6 0.06
ACGTcount: A:0.31, C:0.07, G:0.05, T:0.57
Consensus pattern (25 bp):
CTATATTATGTATATATTTTTTACA
Found at i:23771869 original size:25 final size:24
Alignment explanation
Indices: 23771807--23771879 Score: 58
Period size: 25 Copynumber: 2.9 Consensus size: 24
23771797 TATGTATATA
**
23771807 TTTTAATTATATTATGTATGTA-TT
1 TTTTAATT-TATTATGTACATATTT
*
23771831 TTTTACACTATATTATGTACATATTT
1 TTTTA-A-TTTATTATGTACATATTT
* *
23771857 TTTTATATTTATTTTATACATAT
1 TTTTA-ATTTATTATGTACATAT
23771880 GTATATATTA
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
24 5 0.13
25 25 0.64
26 9 0.23
ACGTcount: A:0.30, C:0.05, G:0.04, T:0.60
Consensus pattern (24 bp):
TTTTAATTTATTATGTACATATTT
Found at i:23771896 original size:78 final size:77
Alignment explanation
Indices: 23771724--23771896 Score: 179
Period size: 78 Copynumber: 2.2 Consensus size: 77
23771714 ATATTATGTA
* * * * *
23771724 TATATATTATACTATTTTATGTATATATCTTTAATACTATATTATTTATATATATTTTTTCTACA
1 TATATATTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATATTTTTTATACA
*
23771789 TGTTATCTTATG
66 TGTTATCATATG
* * * * *
23771801 TATATATTTTAATTATATTATGTATGTATTTTTTACACTATATTATGTACATAT-TTTTTTATAT
1 TATATATTAT-ACTATATTATGTATATATCTTTAACACTATATTATGTACATATATTTTTTATA-
* *
23771865 TTATTTTATACATATG
64 -CATGTTAT-CATATG
23771881 TATATATTATA-TATAT
1 TATATATTATACTATAT
23771897 CTTAACATTA
Statistics
Matches: 78, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
77 17 0.22
78 40 0.51
79 7 0.09
80 14 0.18
ACGTcount: A:0.32, C:0.06, G:0.04, T:0.58
Consensus pattern (77 bp):
TATATATTATACTATATTATGTATATATCTTTAACACTATATTATGTACATATATTTTTTATACA
TGTTATCATATG
Found at i:23771948 original size:25 final size:24
Alignment explanation
Indices: 23771920--23771975 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
23771910 GTTATATTTT
*
23771920 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
23771945 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
23771968 CACTATTA
1 CACTATTA
23771976 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:23782670 original size:87 final size:92
Alignment explanation
Indices: 23782500--23782665 Score: 220
Period size: 90 Copynumber: 1.9 Consensus size: 92
23782490 TATTTCTATC
* * *
23782500 TTTCAAAAAATCAAACTCATATTGCGAGAGGTGAGTTGGGCCTCAGGTCACACGCTGAGGTATTT
1 TTTCAAAAAATCAAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGTCACACGCCGAGGTATTT
23782565 TCAATTTCCGTTTTTTCAATTTATGCT
66 TCAATTTCCGTTTTTTCAATTTATGCT
** *
23782592 TTTC-AAAAATC-AACTCATATTGCGAGA-GTGAGCTGAGCCTC-GG-GGCACGCCGGGGTATTT
1 TTTCAAAAAATCAAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGTCACACGCCGAGGTATTT
*
23782652 T-AATTT-TGTTTTTT
66 TCAATTTCCGTTTTTT
23782666 TTCAAAAATC
Statistics
Matches: 67, Mismatches: 7, Indels: 7
0.83 0.09 0.09
Matches are distributed among these distances:
85 7 0.10
86 5 0.07
87 14 0.21
88 2 0.03
89 12 0.18
90 16 0.24
91 7 0.10
92 4 0.06
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.36
Consensus pattern (92 bp):
TTTCAAAAAATCAAACTCATATTGCGAGAGGTGAGCTGAGCCTCAGGTCACACGCCGAGGTATTT
TCAATTTCCGTTTTTTCAATTTATGCT
Found at i:23782677 original size:73 final size:75
Alignment explanation
Indices: 23782591--23782739 Score: 241
Period size: 73 Copynumber: 2.0 Consensus size: 75
23782581 CAATTTATGC
* *
23782591 TTTTCAAAAATCAACTCATATTGCGAGA-GTGAGCTGAGCCTCGGGGCACGCCGGGGTATTTT-A
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAG-TGAGCCTCAGGGCACGCCGAGGTATTTTCA
23782654 ATTT-TGTTTT
65 ATTTCTGTTTT
*
23782664 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTGAGCCTCAGGGCACGCTGAGGTATTTTCAA
1 TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTGAGCCTCAGGGCACGCCGAGGTATTTTCAA
23782729 TTTCTGTTTT
66 TTTCTGTTTT
23782739 T
1 T
23782740 AATTTTTGCC
Statistics
Matches: 70, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
73 53 0.76
74 10 0.14
75 7 0.10
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.35
Consensus pattern (75 bp):
TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTGAGCCTCAGGGCACGCCGAGGTATTTTCAA
TTTCTGTTTT
Found at i:23782740 original size:87 final size:88
Alignment explanation
Indices: 23782649--23782922 Score: 301
Period size: 97 Copynumber: 3.0 Consensus size: 88
23782639 CGCCGGGGTA
*
23782649 TTTTAATTTTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAG-TGAGCCTCAGGGCAC
1 TTTTAATTTTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
23782713 GCTGAGGTATTTTCAATTTCTGT
66 GCTGAGGTATTTTCAATTTCTGT
23782736 TTTTAATTTTTGCCTTACAAATTCTGCTTTTC--AAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTTAA-TTTTG---T-----TT-T--TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
*
23782799 G-CTCAGGACACGCTGAGGTATTTTCAATTTTCGTTT
54 GCCTCAGGACACGCTGAGGTATTTTCAA-TTTC-TGT
* * *
23782835 TTTTAATTTATG---TTTCTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACA
1 TTTTAATTT-TGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *
23782897 CGCTGAGGTAATTTCAATTTTTGT
65 CGCTGAGGTATTTTCAATTTCTGT
23782921 TT
1 TT
23782923 GTCAAAACTC
Statistics
Matches: 160, Mismatches: 8, Indels: 39
0.77 0.04 0.19
Matches are distributed among these distances:
85 3 0.02
86 4 0.03
87 41 0.26
88 30 0.19
91 1 0.01
96 2 0.01
97 53 0.33
98 11 0.07
99 15 0.09
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (88 bp):
TTTTAATTTTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
GCTGAGGTATTTTCAATTTCTGT
Found at i:23782821 original size:170 final size:179
Alignment explanation
Indices: 23782588--23782922 Score: 438
Period size: 170 Copynumber: 1.9 Consensus size: 179
23782578 TTTCAATTTA
* * *
23782588 TGCTTTTCAAAAATCAACTCATATTGCGAGAGTGAGCTGAGCCTCGGGGCACGCCGGGGTATTTT
1 TGCTTTTC-AAAATCAACTCATATTGCGAGAGTGAGCTGAGCCTCAGGACACGCCGAGGTATTTT
* *
23782653 -AATTTT-G-T-TTT-T-TTTC-AAAAATCAACTCATATTGCGAGAGGTGAG-TGAGCCTCAGGG
65 CAATTTTCGTTATTTATGTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGA
*
23782710 CACGCTGAGGTATTTTCAATTTCTGTTTTTAATTTTTGCCTTACAAATTC
130 CACGCTGAGGTAATTTCAATTTCTGTTTTTAATTTTTGCCTTACAAATTC
* *
23782760 TGCTTTTC-AAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTCAGGACACGCTGAGGTATTTT
1 TGCTTTTCAAAATCAACTCATATTGCGAGA-GTGAGCTGAGCCTCAGGACACGCCGAGGTATTTT
23782823 CAATTTTCGTTTTTTTAATTTATGTTTCTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
65 CAATTTTCG-----TT-ATTTATGTTTC-AAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGC
*
23782888 CTCAGGACACGCTGAGGTAATTTCAATTTTTGTTT
123 CTCAGGACACGCTGAGGTAATTTCAATTTCTGTTT
23782923 GTCAAAACTC
Statistics
Matches: 138, Mismatches: 9, Indels: 19
0.83 0.05 0.11
Matches are distributed among these distances:
170 40 0.29
171 15 0.11
172 9 0.07
178 1 0.01
180 3 0.02
181 1 0.01
182 4 0.03
184 28 0.20
185 37 0.27
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.37
Consensus pattern (179 bp):
TGCTTTTCAAAATCAACTCATATTGCGAGAGTGAGCTGAGCCTCAGGACACGCCGAGGTATTTTC
AATTTTCGTTATTTATGTTTCAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGAC
ACGCTGAGGTAATTTCAATTTCTGTTTTTAATTTTTGCCTTACAAATTC
Found at i:23782996 original size:257 final size:260
Alignment explanation
Indices: 23782507--23782996 Score: 733
Period size: 257 Copynumber: 1.9 Consensus size: 260
23782497 ATCTTTCAAA
*
23782507 AAATCAAACTCATATTGCGAGAGGTGAGTTGGGCCTCAGGTCACACGCTGAGGTATTTTCAATTT
1 AAATCAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-CACACGCTGAGGTATTTTCAATTT
* * *
23782572 CCGTTTTTTCAATTTATGCTTTTCAAAAATCAACTCATATTGCGAGAGTGAGCTGAGCCTCGGGG
65 CCGTTTTTTCAATTTATGCTTTTAAAAAATCAACTCATATTGCGAGAGTGAGCTGAGCCTCAGGA
* * * * *
23782637 CACGCCGGGGTATTTTAATTTTGTTTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTGAG
130 CACGCCGAGGTATTTCAATTTTGTTGTTTGTCAAAAATCAACTCATATTGCAAGAGGTGAGTGAG
* *
23782702 CCTCAGGGCACGCTGAGGTATTTTCAATTTCTGTTTTTAATTTTTGCCTTACAAATTCTGCTTTT
195 CCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTAATTTTTGCCTTACAAATTCTGCTTTT
23782767 C
260 C
*
23782768 AAATC-AACTCATATTGCGAGAGGTGAGTTGAG-CTCAGG-ACACGCTGAGGTATTTTCAATTTT
1 AAATCAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCTGAGGTATTTTCAATTTC
* *
23782830 CGTTTTTTTAATTTATG-TTTCTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGG
66 CGTTTTTTCAATTTATGCTTT-TAAAAAATCAACTCATATTGCGAG-AGTGAGCTGAGCCTCAGG
* *
23782894 ACACGCTGAGGTAATTTCAA-TTT-TTGTTTGTCAAAACTCAACTCATATTGCAAGAGGTGAGTT
129 ACACGCCGAGGT-ATTTCAATTTTGTTGTTTGTCAAAAATCAACTCATATTGCAAGAGGTGAG-T
*
23782957 GAGCCTCAAGACACGTTGAGGTATTTTCAATTT-TGTTTTT
192 GAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTT
23782997 CAAAAAATCA
Statistics
Matches: 208, Mismatches: 17, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
256 3 0.01
257 103 0.50
258 59 0.28
259 12 0.06
260 26 0.12
261 5 0.02
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (260 bp):
AAATCAAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGCACACGCTGAGGTATTTTCAATTTC
CGTTTTTTCAATTTATGCTTTTAAAAAATCAACTCATATTGCGAGAGTGAGCTGAGCCTCAGGAC
ACGCCGAGGTATTTCAATTTTGTTGTTTGTCAAAAATCAACTCATATTGCAAGAGGTGAGTGAGC
CTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTTAATTTTTGCCTTACAAATTCTGCTTTTC
Found at i:23783087 original size:71 final size:73
Alignment explanation
Indices: 23782839--23783338 Score: 640
Period size: 73 Copynumber: 6.9 Consensus size: 73
23782829 TCGTTTTTTT
* * * * *
23782839 AATTTATGTTTCTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAGGACACGCTGAG
1 AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
23782904 GTAATTTC
66 GTAATTTC
* * *
23782912 AATTTTTGTTTGTCAAAACTCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAAGACACGTTGAG
1 AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
*
23782977 GTATTTTC
66 GTAATTTC
* * * *
23782985 AA-TTTTGTTTTTCAAAAAATCAACTCA-ATTGCGATAGGTGAGTT-AGCCTCAGGACATGCTGA
1 AATTTTTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGA
23783047 GGTAATTTC
65 GGTAATTTC
* *
23783056 AATTTTTGTTTGTC-AAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGAC-CGTTGAG
1 AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
*
23783119 GTATTTTC
66 GTAATTTC
* *** * * *
23783127 AATTTTGTCTTTAAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACGTTGA
1 AATTTT-TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGA
*
23783192 GGTATTTTC
65 GGTAATTTC
* * * *
23783201 AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCAAG--ACGCTG
1 AATTTTTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTG
23783264 AGGTAATTTC
64 AGGTAATTTC
*
23783274 AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAG--ACGCTGAG
1 AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
23783337 GT
66 GT
23783339 GTTTTCCATT
Statistics
Matches: 375, Mismatches: 43, Indels: 20
0.86 0.10 0.05
Matches are distributed among these distances:
70 11 0.03
71 109 0.29
72 49 0.13
73 147 0.39
74 20 0.05
75 39 0.10
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.33
Consensus pattern (73 bp):
AATTTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
GTAATTTC
Found at i:23783448 original size:13 final size:13
Alignment explanation
Indices: 23783430--23783463 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
23783420 ACGCTGAGGT
23783430 TTTTCAAATTCTA
1 TTTTCAAATTCTA
* *
23783443 TTTTCAAATTTTG
1 TTTTCAAATTCTA
23783456 TTTTCAAA
1 TTTTCAAA
23783464 AAACACTCAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.29, C:0.12, G:0.03, T:0.56
Consensus pattern (13 bp):
TTTTCAAATTCTA
Found at i:23783535 original size:14 final size:14
Alignment explanation
Indices: 23783516--23783550 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
23783506 TGCTGAGGTA
23783516 TTTTCAATTTCTAC
1 TTTTCAATTTCTAC
*
23783530 TTTTCAATTTCTAT
1 TTTTCAATTTCTAC
23783544 TTTTCAA
1 TTTTCAA
23783551 AAGAATCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.23, C:0.17, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTAC
Found at i:23783658 original size:75 final size:75
Alignment explanation
Indices: 23783530--23783705 Score: 264
Period size: 75 Copynumber: 2.3 Consensus size: 75
23783520 CAATTTCTAC
* * *
23783530 TTTTCAATTTCTATTTTTCAAAAGAATCAACTCATATTGTGAGAGATGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACA
*
23783595 CATTGAGGTAA
66 CATTGAGAT-A
*
23783606 TTTT-AATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACA
*
23783670 CGTTGAGATA
66 CATTGAGATA
* *
23783680 TTTTCAATTTCTGTCTTTCAAAAAAA
1 TTTTCAATTTCTATTTTTCAAAAAAA
23783706 AAATCAAAAA
Statistics
Matches: 91, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
74 5 0.05
75 82 0.90
76 4 0.04
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.36
Consensus pattern (75 bp):
TTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACA
CATTGAGATA
Found at i:23783863 original size:336 final size:337
Alignment explanation
Indices: 23783196--23784330 Score: 1654
Period size: 336 Copynumber: 3.4 Consensus size: 337
23783186 CGTTGAGGTA
** * * * *
23783196 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGATAGGTGAGTTGAACCTCA--AGA
1 TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* * *
23783259 CGCTGAGGTAATTTCAATTTTTGTTTGTC--AAAAATCAACTCATATTGCGAGAGGTGAGTTGAA
66 CGCTGAGGTAATTTTAATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
* * * ******** * *
23783322 CCTCAAG--ACGCTGAGGTGTTTTCCATTTCTGT-TCTTCAATTTCTGTGTTTCAAAAAAGTCAG
131 CCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCT-TTCAA--AAAAAAAATCAAAAAAATCAA
* * * * **
23783384 CTCATATTGCGAGTGATGAGTTGAGCCTTAACTCACACGCTGAGGT-TTTTCAAATTCTATTT-T
193 CTCATATTGCGAGAGGTGAGTTGAGCC-T--C-AAGACGCTGAGGTATTTTC-AATTCCGTTTGT
*
23783447 CAAATTT-TGTTTTCAAAAA-AC-ACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACGTGC
253 CAAATTTAT-TTTTCAAAAATCCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACGTGC
*
23783509 TGAGGTATTTTCAATTTCTAC
317 TGAGGTATTTTCAATTTCTGC
* * *
23783530 TTTTCAATTTCTATTTTTCAAAAGAATCAACTCATATTGTGAGAGATGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
** * *
23783595 CATTGAGGTAATTTTAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
66 CGCTGAGGTAATTTTAATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
*
23783660 CCTCAAGACACGTTGAGATATTTTCAATTTCTGTCTTTCAAAAAAAAAATCAAAAAAATCAACTC
131 CCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAATCAAAAAAATCAACTC
23783725 ATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTT-AATTCCGTTTGTCAAATTTA
196 ATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTCCGTTTGTCAAATTTA
* * *
23783789 TTTTTCAAAAATCCAACTCATATTGCGAGAGGTAAGTTGAGCCTCGGCTTACGTGCTAAGGTATT
261 TTTTTCAAAAATCCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACGTGCTGAGGTATT
23783854 TTCAATTTCTGC
326 TTCAATTTCTGC
*
23783866 TTTTTAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
*
23783931 CGCTGAGGTAATTTTAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
66 CGCTGAGGTAATTTTAATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
23783996 CCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTC-AAAAAAAAATCAAAAAAATCAACTC
131 CCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAATCAAAAAAATCAACTC
*
23784060 ATATTGCGAGAGGTGAGTTGAGCTTCAAGACGCTGAGGTATTTTCAATTTCCGTTTGTC-AATTT
196 ATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAA-TTCCGTTTGTCAAATTT
23784124 ATTTTTCAAAAATCCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACGTGCTGAGGTAT
260 ATTTTTCAAAAATCCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACGTGCTGAGGTAT
23784189 TTTCAATTTCTGC
325 TTTCAATTTCTGC
23784202 TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
* *
23784267 CGCTGAGGTAATTTTAATTTCTG-TTGTCAAAAAAATCAACTCGTATTACGAGAGGTGAGTTGAG
66 CGCTGAGGTAATTTTAATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
23784331 TCTTGGGCTA
Statistics
Matches: 732, Mismatches: 55, Indels: 27
0.90 0.07 0.03
Matches are distributed among these distances:
333 8 0.01
334 83 0.11
335 113 0.15
336 413 0.56
337 12 0.02
338 76 0.10
340 26 0.04
341 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35
Consensus pattern (337 bp):
TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
CGCTGAGGTAATTTTAATTTCTGTTTGTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
CCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAAATCAAAAAAATCAACTC
ATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAATTCCGTTTGTCAAATTTA
TTTTTCAAAAATCCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACGTGCTGAGGTATT
TTCAATTTCTGC
Found at i:23783874 original size:14 final size:14
Alignment explanation
Indices: 23783852--23783886 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
23783842 TGCTAAGGTA
*
23783852 TTTTCAATTTCTGC
1 TTTTCAATTTCTAC
*
23783866 TTTTTAATTTCTAC
1 TTTTCAATTTCTAC
23783880 TTTTCAA
1 TTTTCAA
23783887 AAGAATCAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.20, C:0.17, G:0.03, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTAC
Found at i:23783898 original size:261 final size:247
Alignment explanation
Indices: 23783606--23784285 Score: 702
Period size: 261 Copynumber: 2.6 Consensus size: 247
23783596 ATTGAGGTAA
*
23783606 TTTTAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
1 TTTTAATTTCTATTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
23783671 GTTGAGATATTTTCAATTTCTGTCTTTCAAAAAAAAAATCAAAAAAATCAACTCATATTGCGAGA
65 GTTGAGGTATTTTCAATTTCTGTCTTTC-------AAATCAAAAAAATCAACTCATATTGCGAGA
*** ** ***
23783736 GGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTAATTCCGT-TTGTCAAATTTATTTTTCAAAAA
123 GGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTAATTCCGTCTT-TCAAAAAAAAATCAAAAAAA
* *
23783800 TCCAACTCATATTGCGAGAGGTAAGTTGAGCCTC-GGCTTACGTGCTAAGGTATTTTCAATTTCT
187 T-CAACTCATATTGCGAGAGGTAAGTTGAGCCTCAAG---AC--GCTAAGGTATTTTCAATTTCC
23783864 GCT
246 G-T
*
23783867 TTTTAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
1 TTTTAATTTCTATTTTTCAAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
23783932 GCTGAGGTAATTTT-AATTTCTGT-TTT----TCAAAAAAATCAACTCATATTGCGAGAGGTGAG
65 GTTGAGGT-ATTTTCAATTTCTGTCTTTCAAATCAAAAAAATCAACTCATATTGCGAGAGGTGAG
* *
23783991 TTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCTGTCTTTCAAAAAAAAATCAAAAAAATCA
129 TTGAGCCTCAAG--ACGCTGAGGTATTTT-AA-TTCCGTCTTTCAAAAAAAAATCAAAAAAATCA
* * *
23784056 ACTCATATTGCGAGAGGTGAGTTGAGCTTCAAGACGCTGAGGTATTTTCAATTTCCGT
190 ACTCATATTGCGAGAGGTAAGTTGAGCCTCAAGACGCTAAGGTATTTTCAATTTCCGT
* *
23784114 TTGTCAA-TT-TATTTTTC-AAAAATCCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTC
1 TT-TTAATTTCTATTTTTCAAAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-AC
*
23784175 ACGTGCTGAGGTATTTTCAATTTCTG-CTTTTCAATTTCTACTTTTCAAAAGAATCAACTCATAT
63 ACGT--TGAGGTATTTTCAATTTCTGTC-TTTCAA-----A----TCAAAAAAATCAACTCATAT
*
23784239 TGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTTAATT
116 TGCGAGAGGTGAGTTGAGCCTCA--AGACGCTGAGGT-ATTTTAATT
23784286 TCTGTTGTCA
Statistics
Matches: 361, Mismatches: 26, Indels: 65
0.80 0.06 0.14
Matches are distributed among these distances:
244 5 0.01
245 39 0.11
246 12 0.03
247 19 0.05
248 26 0.07
249 45 0.12
250 2 0.01
251 14 0.04
252 32 0.09
253 19 0.05
254 2 0.01
260 9 0.02
261 126 0.35
262 10 0.03
263 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.34
Consensus pattern (247 bp):
TTTTAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
TTGAGGTATTTTCAATTTCTGTCTTTCAAATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTT
GAGCCTCAAGACGCTGAGGTATTTTAATTCCGTCTTTCAAAAAAAAATCAAAAAAATCAACTCAT
ATTGCGAGAGGTAAGTTGAGCCTCAAGACGCTAAGGTATTTTCAATTTCCGT
Found at i:23783990 original size:75 final size:75
Alignment explanation
Indices: 23783866--23784208 Score: 316
Period size: 75 Copynumber: 4.3 Consensus size: 75
23783856 CAATTTCTGC
* ** *
23783866 TTTTTAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
23783931 CGCTGAGGTAA
66 CGCTGAGGT-A
*
23783942 TTTT-AATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACA
1 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
*
23784006 CGTTGAGGTA
66 CGCTGAGGTA
23784016 TTTTCAATTTCTGTCTTTCAAAAAAAAATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTTCAATTTCTGT-TTT----------TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
* *
23784081 GCTTCA--AGACGCTGAGGTA
55 GCCTCAGGACACGCTGAGGTA
* *
23784100 TTTTCAATTTCCGTTTGTCAATTTATTTTTCAAAAATCCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTTCAATTTCTGTTTTTC-A---A------AAAAAT-CAACTCATATTGCGAGAGGTGAGTTGA
*
23784165 GCCTC-GGCTCACGTGCTGAGGTA
55 GCCTCAGG-ACAC--GCTGAGGTA
*
23784188 TTTTCAATTTCTGCTTTTCAA
1 TTTTCAATTTCTGTTTTTCAA
23784209 TTTCTACTTT
Statistics
Matches: 223, Mismatches: 16, Indels: 48
0.78 0.06 0.17
Matches are distributed among these distances:
73 2 0.01
74 6 0.03
75 73 0.33
76 7 0.03
77 1 0.00
83 8 0.04
84 56 0.25
86 44 0.20
87 1 0.00
88 25 0.11
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (75 bp):
TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACA
CGCTGAGGTA
Found at i:23784150 original size:84 final size:83
Alignment explanation
Indices: 23783955--23784296 Score: 368
Period size: 84 Copynumber: 3.9 Consensus size: 83
23783945 TAATTTCTGT
*
23783955 TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGTTGAGGTATTTT
1 TTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG--ACGCTGAGGTATTTT
**
23784020 CAATTTCTGTCTTTCAA-AAAA
63 CAATTTCTGT-TTTCAATTTAA
*** *
23784041 AAATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAAGACGCTGAGGTATTTTCA
1 TTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCA
* *
23784106 ATTTCCGTTTGTCAATTTAT
65 ATTTCTGTTT-TCAATTTAA
*
23784126 TTTTC-AAAAATCCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GGCTCACGTGCTGAGGTAT
1 TTTTCAAAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAG---AC--GCTGAGGTAT
*
23784189 TTTCAATTTCTGCTTTTCAATTTCTAC
60 TTTCAATTTCTG-TTTTCAA-TT-TAA
*
23784216 TTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTT
1 TTTTCAAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCA--AGACGCTGAGGT-ATTT
*
23784281 T-AATTTCTGTTGTCAA
62 TCAATTTCTGTTTTCAA
23784297 AAAAATCAAC
Statistics
Matches: 220, Mismatches: 19, Indels: 32
0.81 0.07 0.12
Matches are distributed among these distances:
83 9 0.04
84 58 0.26
85 3 0.01
86 46 0.21
88 31 0.14
89 21 0.10
90 12 0.05
91 37 0.17
92 3 0.01
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (83 bp):
TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACGCTGAGGTATTTTCAA
TTTCTGTTTTCAATTTAA
Found at i:23784207 original size:14 final size:14
Alignment explanation
Indices: 23784188--23784222 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
23784178 TGCTGAGGTA
*
23784188 TTTTCAATTTCTGC
1 TTTTCAATTTCTAC
23784202 TTTTCAATTTCTAC
1 TTTTCAATTTCTAC
23784216 TTTTCAA
1 TTTTCAA
23784223 AAGAATCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.03, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCTAC
Found at i:23785196 original size:30 final size:30
Alignment explanation
Indices: 23785159--23785287 Score: 204
Period size: 30 Copynumber: 4.3 Consensus size: 30
23785149 CTAGCCTTTG
23785159 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
*
23785189 TCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
23785219 CCACCACCTACTCCACTAGCCACACTTGCA
1 CCACCACCAACTCCACTAGCCACACTTGCT
* * *
23785249 CCACCACCTACTCCATTGGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
23785279 CCACCACCA
1 CCACCACCA
23785288 CTTATACCTA
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 91 1.00
ACGTcount: A:0.26, C:0.50, G:0.07, T:0.18
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:23785854 original size:25 final size:26
Alignment explanation
Indices: 23785826--23785885 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 26
23785816 CTATATTACG
*
23785826 TATATATATT-ATACTATTTTATGTA
1 TATATATATTAATACTATATTATGTA
* *
23785851 TATATCT-TTAATACTATATTATTTA
1 TATATATATTAATACTATATTATGTA
23785876 TATATATATT
1 TATATATATT
23785886 TTTTTCTACA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
24 2 0.07
25 25 0.86
26 2 0.07
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.57
Consensus pattern (26 bp):
TATATATATTAATACTATATTATGTA
Found at i:23785933 original size:25 final size:25
Alignment explanation
Indices: 23785904--23785955 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
23785894 CATGTTATCT
*
23785904 TATGTATATATTTA-ATTATATTATG
1 TATGTAT-TATTTACACTATATTATG
*
23785929 TATGTATTTTTTACACTATATTATG
1 TATGTATTATTTACACTATATTATG
23785954 TA
1 TA
23785956 CATATTTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.33, C:0.04, G:0.08, T:0.56
Consensus pattern (25 bp):
TATGTATTATTTACACTATATTATG
Found at i:23785969 original size:21 final size:21
Alignment explanation
Indices: 23785898--23785970 Score: 65
Period size: 21 Copynumber: 3.3 Consensus size: 21
23785888 TTTCTACATG
* **
23785898 TTATCTTATGTATATATTTAA
1 TTATATTATGTATATATTTTT
*
23785919 TTATATTATGTATGTATTTTT
1 TTATATTATGTATATATTTTT
*
23785940 TACACTATATTATGTACATATTTTT
1 T----TATATTATGTATATATTTTT
23785965 TTATAT
1 TTATAT
23785971 CTATTTCATA
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
21 23 0.55
25 19 0.45
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.59
Consensus pattern (21 bp):
TTATATTATGTATATATTTTT
Found at i:23786054 original size:25 final size:24
Alignment explanation
Indices: 23786026--23786081 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 24
23786016 GTTATATTTT
*
23786026 CACTATTTTAT-GTATATACTTCAAA
1 CACTATTATATAGTATAT--TTCAAA
*
23786051 CACTA-TATATAGTATATTTCTAA
1 CACTATTATATAGTATATTTCAAA
23786074 CACTATTA
1 CACTATTA
23786082 CTATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
23 10 0.37
24 6 0.22
25 11 0.41
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (24 bp):
CACTATTATATAGTATATTTCAAA
Found at i:23791144 original size:33 final size:33
Alignment explanation
Indices: 23791107--23791171 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
23791097 AACAAGTTAT
23791107 AATTGCTCCAAAGTATCAATATTTTACAAGATG
1 AATTGCTCCAAAGTATCAATATTTTACAAGATG
*
23791140 AATTGCTCCAAAGTATCGATATTTTACAAGAT
1 AATTGCTCCAAAGTATCAATATTTTACAAGAT
23791172 ATCAATACCA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.34
Consensus pattern (33 bp):
AATTGCTCCAAAGTATCAATATTTTACAAGATG
Found at i:23791274 original size:20 final size:20
Alignment explanation
Indices: 23791224--23791268 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
23791214 GTATCGATCC
*
23791224 GGTATCAATACT-TTTCTTAA
1 GGTATCAATA-TATTTCCTAA
23791244 GGTATCAATATATTTCCTAA
1 GGTATCAATATATTTCCTAA
23791264 GGTAT
1 GGTAT
23791269 AGATATTCCT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 1 0.04
20 22 0.96
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.42
Consensus pattern (20 bp):
GGTATCAATATATTTCCTAA
Found at i:23792511 original size:24 final size:24
Alignment explanation
Indices: 23792484--23792531 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
23792474 TGTGTAAGAA
23792484 AAAAAAAGAACATTATCCTTAAAT
1 AAAAAAAGAACATTATCCTTAAAT
23792508 AAAAAAAGAACATTATCCTTAAAT
1 AAAAAAAGAACATTATCCTTAAAT
23792532 CATAACTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.58, C:0.12, G:0.04, T:0.25
Consensus pattern (24 bp):
AAAAAAAGAACATTATCCTTAAAT
Found at i:23795975 original size:18 final size:19
Alignment explanation
Indices: 23795952--23795996 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
23795942 TACTTTACGT
23795952 AAAACATGCATA-ATATTC
1 AAAACATGCATATATATTC
*
23795970 AAAACACT-CTTATATATTC
1 AAAACA-TGCATATATATTC
23795989 AAAA-ATGC
1 AAAACATGC
23795997 TTATTCATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
17 1 0.04
18 11 0.48
19 11 0.48
ACGTcount: A:0.49, C:0.18, G:0.04, T:0.29
Consensus pattern (19 bp):
AAAACATGCATATATATTC
Found at i:23796137 original size:38 final size:38
Alignment explanation
Indices: 23796095--23796169 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
23796085 TGTTTCGGGG
* *
23796095 ATGCCATGGTATCTTTCAATCATGGTCTTTTCCTTTTA
1 ATGCCATGATATATTTCAATCATGGTCTTTTCCTTTTA
*
23796133 ATGCCATGATATATTTCAATGATGGTCTTTTCCTTTT
1 ATGCCATGATATATTTCAATCATGGTCTTTTCCTTTT
23796170 TTTAATCAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.20, C:0.19, G:0.13, T:0.48
Consensus pattern (38 bp):
ATGCCATGATATATTTCAATCATGGTCTTTTCCTTTTA
Found at i:23798156 original size:21 final size:21
Alignment explanation
Indices: 23798126--23798168 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
23798116 TTATTAATAA
23798126 AATAAAATAAAATAAAAGGTT
1 AATAAAATAAAATAAAAGGTT
* *
23798147 AATAAGATAATATAAAAGGTT
1 AATAAAATAAAATAAAAGGTT
23798168 A
1 A
23798169 GTTTTCTTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.63, C:0.00, G:0.12, T:0.26
Consensus pattern (21 bp):
AATAAAATAAAATAAAAGGTT
Found at i:23802628 original size:11 final size:11
Alignment explanation
Indices: 23802612--23802637 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
23802602 TGAATTAAGT
23802612 AAAAAAAGAAA
1 AAAAAAAGAAA
23802623 AAAAAAAGAAA
1 AAAAAAAGAAA
23802634 AAAA
1 AAAA
23802638 CTTAAAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:23804065 original size:12 final size:12
Alignment explanation
Indices: 23804016--23804068 Score: 61
Period size: 13 Copynumber: 4.1 Consensus size: 12
23804006 AAAATTAATT
23804016 TTCTCAAATTATAA
1 TTCTCAAA--ATAA
23804030 TTCTCATAAATAA
1 TTCTCA-AAATAA
23804043 TGTCTCAAAATAA
1 T-TCTCAAAATAA
*
23804056 TTCACAAAATAA
1 TTCTCAAAATAA
23804068 T
1 T
23804069 CATGCATTGG
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
12 11 0.31
13 12 0.33
14 11 0.31
15 2 0.06
ACGTcount: A:0.47, C:0.15, G:0.02, T:0.36
Consensus pattern (12 bp):
TTCTCAAAATAA
Found at i:23804977 original size:145 final size:145
Alignment explanation
Indices: 23804714--23805004 Score: 519
Period size: 145 Copynumber: 2.0 Consensus size: 145
23804704 AACGAAAAAT
23804714 TGAGTTATGGGTTAACATTAATGGAAAAATCAAGAAACGATGTGTTAGGCGCAATGGAGTTCATT
1 TGAGTTATGGGTTAACATTAATGGAAAAATCAAGAAACGATGTGTTAGGCGCAATGGAGTTCATT
* *
23804779 AAAGGTTAATTACGAAGGTAGGGCTTTTATGGAATAAGTGGGTTAAAACCTAAGTGCCTTTATCA
66 AAAGGTTAATTACAAAGGTAGGGCTTTTATGGAATAAGTGGGCTAAAACCTAAGTGCCTTTATCA
23804844 TCTTAGTATATCAAA
131 TCTTAGTATATCAAA
* * *
23804859 TGAGTTATGGGTTAACATTATTGGAAAAATCAAGAAACGATGTGTTAGGCTCAATGGGGTTCATT
1 TGAGTTATGGGTTAACATTAATGGAAAAATCAAGAAACGATGTGTTAGGCGCAATGGAGTTCATT
* *
23804924 AAGGGTTAATTACAAAGGTAGGGCTTTTATGGAATAAGTGGGCTGAAACCTAAGTGCCTTTATCA
66 AAAGGTTAATTACAAAGGTAGGGCTTTTATGGAATAAGTGGGCTAAAACCTAAGTGCCTTTATCA
23804989 TCTTAGTATATCAAA
131 TCTTAGTATATCAAA
23805004 T
1 T
23805005 CAAATGTGTG
Statistics
Matches: 139, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
145 139 1.00
ACGTcount: A:0.34, C:0.11, G:0.24, T:0.32
Consensus pattern (145 bp):
TGAGTTATGGGTTAACATTAATGGAAAAATCAAGAAACGATGTGTTAGGCGCAATGGAGTTCATT
AAAGGTTAATTACAAAGGTAGGGCTTTTATGGAATAAGTGGGCTAAAACCTAAGTGCCTTTATCA
TCTTAGTATATCAAA
Found at i:23805731 original size:6 final size:6
Alignment explanation
Indices: 23805722--23805775 Score: 63
Period size: 6 Copynumber: 8.8 Consensus size: 6
23805712 ACAACACAAC
* * * *
23805722 TAAAAA TAAAAA TAAACA TAAACA TAAAAAA TAAAAT TAAAAT TAAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA T-AAAAA TAAAAA TAAAAA TAAAAA
23805771 TAAAA
1 TAAAA
23805776 CAAATAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
6 38 0.88
7 5 0.12
ACGTcount: A:0.76, C:0.04, G:0.00, T:0.20
Consensus pattern (6 bp):
TAAAAA
Found at i:23805751 original size:25 final size:26
Alignment explanation
Indices: 23805723--23805784 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 26
23805713 CAACACAACT
*
23805723 AAAAATAAAAATAAACA-TAAACAT-A
1 AAAAATAAAAATAAA-ATTAAAAATAA
*
23805748 AAAAATAAAATTAAAATTAAAAATAA
1 AAAAATAAAAATAAAATTAAAAATAA
23805774 AACAAATAAAA
1 AA-AAATAAAA
23805785 TCAATGATCC
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 1 0.03
25 20 0.62
26 3 0.09
27 8 0.25
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (26 bp):
AAAAATAAAAATAAAATTAAAAATAA
Found at i:23812438 original size:21 final size:21
Alignment explanation
Indices: 23812414--23812488 Score: 64
Period size: 21 Copynumber: 3.6 Consensus size: 21
23812404 ATAAGTGCTA
*
23812414 AACAGAAACTCGTAAGGATTG
1 AACAGAAACTCATAAGGATTG
23812435 AACA-AAAGCTCATAA-GAGTTG
1 AACAGAAA-CTCATAAGGA-TTG
* * * *
23812456 AATAGAAACCCATAAGGGTTA
1 AACAGAAACTCATAAGGATTG
*
23812477 AACAGAAGCTCA
1 AACAGAAACTCA
23812489 AAAGAGCTGA
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
20 5 0.12
21 33 0.79
22 4 0.10
ACGTcount: A:0.47, C:0.16, G:0.20, T:0.17
Consensus pattern (21 bp):
AACAGAAACTCATAAGGATTG
Found at i:23812464 original size:42 final size:42
Alignment explanation
Indices: 23812417--23812533 Score: 119
Period size: 42 Copynumber: 2.8 Consensus size: 42
23812407 AGTGCTAAAC
* * * * *
23812417 AGAAACTCGTAAGGATTGAACAAAAGCTCATAAGAGTTGAAT
1 AGAAACCCATAAGGATTAAACAAAAGCTCAAAAGAGCTGAAT
* * *
23812459 AGAAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTGAAC
1 AGAAACCCATAAGGATTAAACAAAAGCTCAAAAGAGCTGAAT
* * *
23812501 GGAAACCCGAT-AGGGTTAAACGAAAGCTCAAAA
1 AGAAACCC-ATAAGGATTAAACAAAAGCTCAAAA
23812534 AGGATGAACG
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
42 61 0.97
43 2 0.03
ACGTcount: A:0.46, C:0.16, G:0.22, T:0.15
Consensus pattern (42 bp):
AGAAACCCATAAGGATTAAACAAAAGCTCAAAAGAGCTGAAT
Found at i:23812542 original size:42 final size:41
Alignment explanation
Indices: 23812435--23812562 Score: 125
Period size: 42 Copynumber: 3.0 Consensus size: 41
23812425 GTAAGGATTG
* * * **
23812435 AACAAAAGCTCATAAGAGTTGAATAGAAACCCATAAGGGTTA
1 AACAGAAGCTCAAAAGAGATGAACGGAAACCCAT-AGGGTTA
*
23812477 AACAGAAGCTCAAAAGAGCTGAACGGAAACCCGATAGGGTTA
1 AACAGAAGCTCAAAAGAGATGAACGGAAACCC-ATAGGGTTA
* *
23812519 AAC-GAAAGCTCAAAA-AGGATGAACGAAAACCTAATAGGGTTA
1 AACAG-AAGCTCAAAAGA-GATGAACGGAAACC-CATAGGGTTA
23812561 AA
1 AA
23812563 TGGAAACTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
41 2 0.03
42 70 0.95
43 2 0.03
ACGTcount: A:0.48, C:0.16, G:0.22, T:0.15
Consensus pattern (41 bp):
AACAGAAGCTCAAAAGAGATGAACGGAAACCCATAGGGTTA
Found at i:23817469 original size:26 final size:27
Alignment explanation
Indices: 23817419--23817469 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
23817409 ATTATTCAAC
*
23817419 TTCTCTTTGAGTTTTCTTTTTAAGAAT
1 TTCTCTTTGAGTTTTCTTTTGAAGAAT
23817446 TTCTC-TTGAG-TTTCTTTTAGAAGA
1 TTCTCTTTGAGTTTTCTTTT-GAAGA
23817470 GTTTTAACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 8 0.36
26 9 0.41
27 5 0.23
ACGTcount: A:0.20, C:0.12, G:0.14, T:0.55
Consensus pattern (27 bp):
TTCTCTTTGAGTTTTCTTTTGAAGAAT
Found at i:23820949 original size:29 final size:29
Alignment explanation
Indices: 23820890--23820955 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
23820880 AGTGCCCAAT
23820890 ATAATATGAG-CACCAATACAAAGTATCTG
1 ATAATAT-AGTCACCAATACAAAGTATCTG
* * *
23820919 ATACTATAGTCACCGATACATAGTA-CTTG
1 ATAATATAGTCACCAATACAAAGTATC-TG
23820948 ATAATATA
1 ATAATATA
23820956 AACACCGGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
28 3 0.10
29 28 0.90
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (29 bp):
ATAATATAGTCACCAATACAAAGTATCTG
Found at i:23827335 original size:17 final size:18
Alignment explanation
Indices: 23827301--23827343 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
23827291 ATGCTAGGTG
*
23827301 TGTATCCTAGCTCTTATA
1 TGTATCCTAACTCTTATA
23827319 TGTATCCTAAC-CTTATA
1 TGTATCCTAACTCTTATA
*
23827336 TGTTTCCT
1 TGTATCCT
23827344 TTTCCCCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 13 0.57
18 10 0.43
ACGTcount: A:0.21, C:0.23, G:0.09, T:0.47
Consensus pattern (18 bp):
TGTATCCTAACTCTTATA
Found at i:23831048 original size:126 final size:126
Alignment explanation
Indices: 23830823--23831169 Score: 545
Period size: 126 Copynumber: 2.7 Consensus size: 126
23830813 CAGTAATTAC
* *
23830823 TGTAGAAAAAGAGTGTCCACGTGGGAGCTTTTTTCAGTAATTTTGTTGACAGTGCATCCTGCTTG
1 TGTAGAAAAAGAGTGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTACTTG
* *
23830888 AAGCGTTTTTGACACTATTTTTTCAGAATCGTCTTCTCAAAATTATTTTTTCAAGAACTAT
66 AAGCGTTTTTGACACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTTCAAGAACTAT
* *
23830949 TGTAGAAAAAGAATGTCCACGTGGGAGCTTTTTTCAATAATTTTGCT-ATCAGTG-AGTCCTACT
1 TGTAGAAAAAGAGTGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGA-CAGTGCA-TCCTACT
23831012 TGAAGCGTTTTTGACACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTTCAAGAACTAT
64 TGAAGCGTTTTTGACACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTTCAAGAACTAT
* * * *
23831075 TGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTTAGTACTTTTGCTGACAGTGCATACTACTTG
1 TGTAGAAAAAGAGTGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTACTTG
* *
23831140 AAGCATTTTTGACATTATTTTTTCAGAAAC
66 AAGCGTTTTTGACACTATTTTTTCA-AAAC
23831170 TACTGTAGAA
Statistics
Matches: 202, Mismatches: 14, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
125 2 0.01
126 194 0.96
127 6 0.03
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.39
Consensus pattern (126 bp):
TGTAGAAAAAGAGTGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCCTACTTG
AAGCGTTTTTGACACTATTTTTTCAAAACCGTCTTCTCAAAATTATTTTTTCAAGAACTAT
Found at i:23831202 original size:98 final size:98
Alignment explanation
Indices: 23831055--23831260 Score: 306
Period size: 98 Copynumber: 2.1 Consensus size: 98
23831045 TCTTCTCAAA
* * * *
23831055 ATTATTTTTTCAAGAACTATTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTTAGTACTTTTG
1 ATTATTTTTTCAAGAACTACTGTAGAAAAAGAACGTCCACGTGGAAGCTTTTTTCAGTACTTTTG
23831120 CTGACAGTGCATACTACTTGAAGCATTTTTGAC
66 CTGACAGTGCATACTACTTGAAGCATTTTTGAC
*
23831153 ATTATTTTTTC-AGAAACTACTGTAGAAAAAGAACGTCCATGTGGAAGCTTTTTTCAGTACTTTT
1 ATTATTTTTTCAAG-AACTACTGTAGAAAAAGAACGTCCACGTGGAAGCTTTTTTCAGTACTTTT
* * * *
23831217 GCTGACAGTGCATCCTGCTTGAAGCGTTTTTGTC
65 GCTGACAGTGCATACTACTTGAAGCATTTTTGAC
*
23831251 ACTATTTTTT
1 ATTATTTTTT
23831261 TTAGAACCGT
Statistics
Matches: 97, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
97 2 0.02
98 95 0.98
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.39
Consensus pattern (98 bp):
ATTATTTTTTCAAGAACTACTGTAGAAAAAGAACGTCCACGTGGAAGCTTTTTTCAGTACTTTTG
CTGACAGTGCATACTACTTGAAGCATTTTTGAC
Found at i:23831521 original size:34 final size:33
Alignment explanation
Indices: 23831393--23831510 Score: 146
Period size: 34 Copynumber: 3.4 Consensus size: 33
23831383 CTAAACACAA
*
23831393 AATTATTTTTAAAAAACTCTAAACTCTAATTTAATT
1 AATT-TTTTT-AAAAACCCTAAAC-CTAATTTAATT
*
23831429 AAATTTTTTAAAAACCCTAAACCCTAATTTAATT
1 AATTTTTTTAAAAACCCTAAA-CCTAATTTAATT
** *
23831463 AATTTACTTAAAACCCCTAAAACCTAATTTAATT
1 AATTTTTTTAAAAACCCT-AAACCTAATTTAATT
23831497 AATTTTTTTAAAAA
1 AATTTTTTTAAAAA
23831511 ATTCTAAACC
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
34 59 0.83
35 9 0.13
36 3 0.04
ACGTcount: A:0.45, C:0.14, G:0.00, T:0.41
Consensus pattern (33 bp):
AATTTTTTTAAAAACCCTAAACCTAATTTAATT
Found at i:23832535 original size:19 final size:20
Alignment explanation
Indices: 23832513--23832554 Score: 61
Period size: 18 Copynumber: 2.2 Consensus size: 20
23832503 AAAATCATAA
*
23832513 AAAAATTATA-AAATATTGT
1 AAAAATTATATAAAAATTGT
23832532 -AAAATTATATAAAAATTGT
1 AAAAATTATATAAAAATTGT
23832551 AAAA
1 AAAA
23832555 GAAAATTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
18 9 0.45
19 8 0.40
20 3 0.15
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (20 bp):
AAAAATTATATAAAAATTGT
Found at i:23832637 original size:21 final size:20
Alignment explanation
Indices: 23832613--23832667 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 20
23832603 ATAAAGTCGT
23832613 AAGAAAATTATAAAAAATGTA
1 AAGAAAA-TATAAAAAATGTA
**
23832634 AAG-AAATATAAAATTTGTA
1 AAGAAAATATAAAAAATGTA
*
23832653 AAAAAAAGTATAAAA
1 AAGAAAA-TATAAAA
23832668 TTAGTGTACT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 13 0.45
20 6 0.21
21 10 0.34
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (20 bp):
AAGAAAATATAAAAAATGTA
Found at i:23832926 original size:10 final size:10
Alignment explanation
Indices: 23832913--23832948 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
23832903 TTTTATATTT
23832913 TTTAATAAAA
1 TTTAATAAAA
23832923 TTTAATAAAA
1 TTTAATAAAA
23832933 TTTAAT--AA
1 TTTAATAAAA
23832941 TTTAATAA
1 TTTAATAA
23832949 TTTCATTGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
8 8 0.33
10 16 0.67
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (10 bp):
TTTAATAAAA
Found at i:23833543 original size:5 final size:5
Alignment explanation
Indices: 23833533--23833557 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
23833523 GAGAATGCAA
23833533 TTTAT TTTAT TTTAT TTTAT TTTAT
1 TTTAT TTTAT TTTAT TTTAT TTTAT
23833558 AATAATTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTAT
Found at i:23852290 original size:40 final size:40
Alignment explanation
Indices: 23852118--23852283 Score: 280
Period size: 40 Copynumber: 4.2 Consensus size: 40
23852108 AACCCAAGTA
* * *
23852118 CCTTCGGGATTTAG-CCGGATATAGCAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
23852157 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
23852197 CCTTCGGGACTTGGCCCGGATATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
23852237 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
23852277 CCTTCGG
1 CCTTCGG
23852284 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 7, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
39 13 0.11
40 106 0.89
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:23853531 original size:13 final size:13
Alignment explanation
Indices: 23853508--23853541 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
23853498 TTATTTTATT
23853508 ATTTCTAACACAAA
1 ATTT-TAACACAAA
23853522 ATTTTAACACAAA
1 ATTTTAACACAAA
23853535 ATGTTTA
1 AT-TTTA
23853542 TAATATGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (13 bp):
ATTTTAACACAAA
Found at i:23860997 original size:25 final size:27
Alignment explanation
Indices: 23860944--23861009 Score: 75
Period size: 25 Copynumber: 2.6 Consensus size: 27
23860934 CATAAGCGCA
23860944 CATA-ATCAAGAAGCACACTCTCGAGC
1 CATATATCAAGAAGCACACTCTCGAGC
* *
23860970 CATATATCAAGATGCTCA-TCT-GAGC
1 CATATATCAAGAAGCACACTCTCGAGC
* *
23860995 CATGTAACAAGAAGC
1 CATATATCAAGAAGC
23861010 TTATCCGGGC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
25 16 0.47
26 7 0.21
27 11 0.32
ACGTcount: A:0.38, C:0.26, G:0.17, T:0.20
Consensus pattern (27 bp):
CATATATCAAGAAGCACACTCTCGAGC
Found at i:23861114 original size:23 final size:23
Alignment explanation
Indices: 23861073--23861117 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
23861063 AGAACTTTTA
* *
23861073 ATCAGGAAGCTCGCGAAGAGCCT
1 ATCAGGAAGCTCACAAAGAGCCT
*
23861096 ATCAGGAAGCTCATAAAGAGCC
1 ATCAGGAAGCTCACAAAGAGCC
23861118 ATGTAACAGG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.36, C:0.24, G:0.27, T:0.13
Consensus pattern (23 bp):
ATCAGGAAGCTCACAAAGAGCCT
Found at i:23861213 original size:24 final size:24
Alignment explanation
Indices: 23861159--23861210 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
23861149 AAGTTCAAGT
* *
23861159 GAGCC-ATGTCAGGAAGCTCATAA
1 GAGCCTATATCAGGAAGCTCAGAA
*
23861182 GAGCCTATATCAGGATGCTCACGAA
1 GAGCCTATATCAGGAAGCTCA-GAA
23861207 GAGC
1 GAGC
23861211 TATGTTTGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 5 0.21
24 13 0.54
25 6 0.25
ACGTcount: A:0.33, C:0.23, G:0.27, T:0.17
Consensus pattern (24 bp):
GAGCCTATATCAGGAAGCTCAGAA
Found at i:23863711 original size:15 final size:16
Alignment explanation
Indices: 23863693--23863729 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
23863683 CTTAACATCA
*
23863693 TAATAATTAACTAA-T
1 TAATAATTAAATAATT
23863708 TAAT-ATTAAATAATT
1 TAATAATTAAATAATT
23863723 TAATAAT
1 TAATAAT
23863730 ATTTTATTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
14 8 0.42
15 9 0.47
16 2 0.11
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (16 bp):
TAATAATTAAATAATT
Found at i:23863877 original size:28 final size:29
Alignment explanation
Indices: 23863846--23863903 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 29
23863836 AATTTTTTTA
* **
23863846 AAAAAAATTG-GAATTGGGAATTGAGAAT
1 AAAAAAATCGAGAATTGACAATTGAGAAT
23863874 -AAAAAATCGAGAATTGACAATTGAGAAT
1 AAAAAAATCGAGAATTGACAATTGAGAAT
23863902 AA
1 AA
23863904 CAAATCAAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
27 8 0.32
28 16 0.64
29 1 0.04
ACGTcount: A:0.53, C:0.03, G:0.21, T:0.22
Consensus pattern (29 bp):
AAAAAAATCGAGAATTGACAATTGAGAAT
Found at i:23863885 original size:14 final size:14
Alignment explanation
Indices: 23863868--23863929 Score: 52
Period size: 14 Copynumber: 4.4 Consensus size: 14
23863858 ATTGGGAATT
23863868 GAGAATAAAAAATC
1 GAGAATAAAAAATC
** * *
23863882 GAGAATTGACAATT
1 GAGAATAAAAAATC
*
23863896 GAGAATAACAAATC
1 GAGAATAAAAAATC
* * *
23863910 AAGAACAAAAAATT
1 GAGAATAAAAAATC
23863924 GAGAAT
1 GAGAAT
23863930 CAAATTGTGA
Statistics
Matches: 33, Mismatches: 15, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
14 33 1.00
ACGTcount: A:0.58, C:0.08, G:0.16, T:0.18
Consensus pattern (14 bp):
GAGAATAAAAAATC
Found at i:23863923 original size:28 final size:28
Alignment explanation
Indices: 23863864--23863929 Score: 78
Period size: 28 Copynumber: 2.4 Consensus size: 28
23863854 TGGAATTGGG
* *** *
23863864 AATTGAGAATAAAAAATCGAGAATTGAC
1 AATTGAGAATAAAAAATCAAGAACAAAA
*
23863892 AATTGAGAATAACAAATCAAGAACAAAA
1 AATTGAGAATAAAAAATCAAGAACAAAA
23863920 AATTGAGAAT
1 AATTGAGAAT
23863930 CAAATTGTGA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.58, C:0.08, G:0.15, T:0.20
Consensus pattern (28 bp):
AATTGAGAATAAAAAATCAAGAACAAAA
Found at i:23868314 original size:11 final size:11
Alignment explanation
Indices: 23868293--23868338 Score: 53
Period size: 10 Copynumber: 4.4 Consensus size: 11
23868283 TAATTAGAGA
23868293 AAAATAA-GTT
1 AAAATAATGTT
23868303 AAAATAATGTT
1 AAAATAATGTT
*
23868314 -AAATTATGTTT
1 AAAATAATG-TT
23868325 AAAAT-ATGTT
1 AAAATAATGTT
23868335 AAAA
1 AAAA
23868339 ACATAAATAC
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
10 20 0.62
11 8 0.25
12 4 0.12
ACGTcount: A:0.54, C:0.00, G:0.09, T:0.37
Consensus pattern (11 bp):
AAAATAATGTT
Found at i:23868339 original size:11 final size:10
Alignment explanation
Indices: 23868293--23868338 Score: 56
Period size: 11 Copynumber: 4.4 Consensus size: 10
23868283 TAATTAGAGA
*
23868293 AAAATAAGTT
1 AAAATATGTT
23868303 AAAATAATGTT
1 AAAAT-ATGTT
*
23868314 AAATTATGTTT
1 AAAATATG-TT
23868325 AAAATATGTT
1 AAAATATGTT
23868335 AAAA
1 AAAA
23868339 ACATAAATAC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
10 14 0.45
11 17 0.55
ACGTcount: A:0.54, C:0.00, G:0.09, T:0.37
Consensus pattern (10 bp):
AAAATATGTT
Found at i:23869235 original size:20 final size:20
Alignment explanation
Indices: 23869210--23869271 Score: 88
Period size: 20 Copynumber: 3.1 Consensus size: 20
23869200 GCTTGTATGG
*
23869210 GTTTGCACTTTGGTGCCTCT
1 GTTTGCACTTCGGTGCCTCT
* *
23869230 GTTTGCACTTCGATGCTTCT
1 GTTTGCACTTCGGTGCCTCT
*
23869250 GCTTGCACTTCGGTGCCTCT
1 GTTTGCACTTCGGTGCCTCT
23869270 GT
1 GT
23869272 ATATCACTAT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.06, C:0.27, G:0.24, T:0.42
Consensus pattern (20 bp):
GTTTGCACTTCGGTGCCTCT
Found at i:23871339 original size:26 final size:26
Alignment explanation
Indices: 23871303--23871410 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
23871293 TGATACAAAT
23871303 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
23871329 TGATAACGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
23871355 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
23871381 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
23871407 TGAT
1 TGAT
23871411 GGGAATTTCA
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 78 1.00
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:23873109 original size:54 final size:54
Alignment explanation
Indices: 23873027--23873170 Score: 254
Period size: 54 Copynumber: 2.7 Consensus size: 54
23873017 TGGAGGAAGC
23873027 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
23873081 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
* *
23873135 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
23873171 ACTTCGTCAC
Statistics
Matches: 87, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
53 6 0.07
54 81 0.93
ACGTcount: A:0.17, C:0.25, G:0.24, T:0.34
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
Found at i:23873181 original size:27 final size:27
Alignment explanation
Indices: 23873030--23873187 Score: 191
Period size: 27 Copynumber: 5.9 Consensus size: 27
23873020 AGGAAGCGTC
*
23873030 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
23873057 CTGGTGGCTCTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
*
23873084 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
23873111 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
23873138 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
* *
23873165 CTGGTGACT-TCGTCACAATATCT
1 CTGGTGGCTCT-GCCACAATATCT
23873188 TGCAGCCTCG
Statistics
Matches: 116, Mismatches: 7, Indels: 16
0.83 0.05 0.12
Matches are distributed among these distances:
26 10 0.09
27 104 0.90
28 2 0.02
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:23873182 original size:81 final size:80
Alignment explanation
Indices: 23873030--23873187 Score: 214
Period size: 81 Copynumber: 2.0 Consensus size: 80
23873020 AGGAAGCGTC
*
23873030 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGGCTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
23873095 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * *
23873111 CTGGTGGCTCTGCCAC-ATATATCTGTTCTGGTGGCTCTGCCACA-ATATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCTGT-CCTGGTGACT
*
23873174 -TCGTCACAATATCT
64 AT-GCCACAATATCT
23873188 TGCAGCCTCG
Statistics
Matches: 69, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
80 16 0.23
81 53 0.77
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTGGTGACTAT
GCCACAATATCTGAT
Found at i:23874727 original size:16 final size:15
Alignment explanation
Indices: 23874708--23874737 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
23874698 AGTAATGATA
23874708 TTGATATGGTATGAGT
1 TTGATATGG-ATGAGT
23874724 TTGATATGGATGAG
1 TTGATATGGATGAG
23874738 ATTTAGTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.27, C:0.00, G:0.33, T:0.40
Consensus pattern (15 bp):
TTGATATGGATGAGT
Found at i:23878106 original size:105 final size:101
Alignment explanation
Indices: 23877984--23878180 Score: 252
Period size: 105 Copynumber: 1.9 Consensus size: 101
23877974 ACACTTGTAA
* *
23877984 TGCCATAACCCAATTATGGTCTTATCATCAG-GATGCCATAGCCAAGCTATGGTCTTACACATAT
1 TGCCATAACCCAATTATGGTCTTATCA-CAGAAATGCCATAGCCAAGCTATGGTATT--ACATAT
23878048 ACATATACTGCTATGGTCCAACCATGGCCTTACGTTCACGG
63 A-A-ATACTGCTATGGTCCAACCATGGCCTTACGTTCACGG
* * * * * *
23878089 TGCCATAACCCAGTTATGGTCTTTTCACTGAAATGCCATAGCCTAGCTGTGGTATTACATTTAAA
1 TGCCATAACCCAATTATGGTCTTATCACAGAAATGCCATAGCCAAGCTATGGTATTACATATAAA
* *
23878154 TATTGCTATGGTCCAACCATGGTCTTA
66 TACTGCTATGGTCCAACCATGGCCTTA
23878181 TCCGTCAATT
Statistics
Matches: 81, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
101 26 0.32
102 1 0.01
103 6 0.07
104 2 0.02
105 46 0.57
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (101 bp):
TGCCATAACCCAATTATGGTCTTATCACAGAAATGCCATAGCCAAGCTATGGTATTACATATAAA
TACTGCTATGGTCCAACCATGGCCTTACGTTCACGG
Found at i:23885608 original size:28 final size:30
Alignment explanation
Indices: 23885551--23885608 Score: 75
Period size: 28 Copynumber: 2.0 Consensus size: 30
23885541 TATAAGGGAC
* **
23885551 AAATTGATTGAGATTTAATGAGAATTGTAT
1 AAATTGATTGAGATGTAATGAGAAAAGTAT
23885581 AAATTGATTGA-ATGT-ATGAGAAAAGTAT
1 AAATTGATTGAGATGTAATGAGAAAAGTAT
23885609 GGTAGTATGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 11 0.44
29 3 0.12
30 11 0.44
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (30 bp):
AAATTGATTGAGATGTAATGAGAAAAGTAT
Found at i:23886506 original size:20 final size:21
Alignment explanation
Indices: 23886465--23886521 Score: 55
Period size: 20 Copynumber: 2.7 Consensus size: 21
23886455 CTATCTTTTT
*
23886465 ATTTCCTTTTCTTTTTCTCTC
1 ATTTCCTTTTCTTTTTCCCTC
23886486 ATTT-CTTTT-TTTCTTCCCTC
1 ATTTCCTTTTCTTT-TTCCCTC
* *
23886506 AATCTCCTTTACTTTT
1 -ATTTCCTTTTCTTTT
23886522 CTTTCATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
19 3 0.10
20 11 0.38
21 7 0.24
22 5 0.17
23 3 0.10
ACGTcount: A:0.09, C:0.28, G:0.00, T:0.63
Consensus pattern (21 bp):
ATTTCCTTTTCTTTTTCCCTC
Found at i:23886590 original size:16 final size:15
Alignment explanation
Indices: 23886548--23886595 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 15
23886538 TCTCTCTCTC
*
23886548 TTTTCTT-AATTTCT
1 TTTTCTTCAATTTTT
23886562 TTTTCTCTC-ATTTTT
1 TTTTCT-TCAATTTTT
23886577 TTCTTCTTCAATTTTT
1 TT-TTCTTCAATTTTT
23886593 TTT
1 TTT
23886596 CTTTTTCTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
14 6 0.21
15 11 0.38
16 12 0.41
ACGTcount: A:0.10, C:0.17, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTTCTTCAATTTTT
Found at i:23889324 original size:46 final size:44
Alignment explanation
Indices: 23889273--23889389 Score: 137
Period size: 46 Copynumber: 2.6 Consensus size: 44
23889263 AGAGCTAGTG
23889273 TAAGACATGTCTGGGACATGCATCAGCCT-CGAGATGTAAGCCAGTC
1 TAAGACATGTCTGGGACATGCATC-GCCTACGAG-T-TAAGCCAGTC
* * * *
23889319 TAAGACATGTTTGGGACATGCATCGGCTACGAGTTAAGCTAGTG
1 TAAGACATGTCTGGGACATGCATCGCCTACGAGTTAAGCCAGTC
*
23889363 TAAGACCATGTCCGGGACATGGCATCG
1 TAAGA-CATGTCTGGGACAT-GCATCG
23889390 GCATCCTATC
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
44 13 0.21
45 16 0.26
46 33 0.53
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.23
Consensus pattern (44 bp):
TAAGACATGTCTGGGACATGCATCGCCTACGAGTTAAGCCAGTC
Found at i:23890498 original size:22 final size:21
Alignment explanation
Indices: 23890467--23890507 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
23890457 TCGAATTGAT
*
23890467 CACACGGGCGCGTTGCCCCTCC
1 CACACAGGCGCG-TGCCCCTCC
*
23890489 CACACAGGCGTGTGCCCCT
1 CACACAGGCGCGTGCCCCT
23890508 GTGTCTAGCA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.12, C:0.46, G:0.27, T:0.15
Consensus pattern (21 bp):
CACACAGGCGCGTGCCCCTCC
Found at i:23891998 original size:48 final size:47
Alignment explanation
Indices: 23891923--23892243 Score: 245
Period size: 48 Copynumber: 6.8 Consensus size: 47
23891913 GAGTAAGTAT
23891923 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATTAACGAG
1 GCCGATGCCATGT-CCAGACATGGTCTTACACTAGCTATCATT-ACGAG
* * * *
23891972 GCCGATGCTATGTCCAGACATGGTCTTACACTAGCTCTCGCATATCCG-T
1 GCCGATGCCATGTCCAGACATGGTCTTACACTAGCTAT--CAT-TACGAG
* *
23892021 GTCGATGCCATGTCCCAGACATGGTCTTACACTAAC-A-CATCT-CGTA-
1 GCCGATGCCATGT-CCAGACATGGTCTTACACTAGCTATCAT-TACG-AG
* * *
23892067 GCTGATG-CTTGTCTCAGACAT-GTCTTACACTAGCT-T-ATGTCTCGAG
1 GCCGATGCCATGTC-CAGACATGGTCTTACACTAGCTATCAT-T-ACGAG
* * *
23892113 GCCGATGCCATGTTCCAGACATGGTCTTACACTAGC-ACTCGACT-CAAT
1 GCCGATGCCATG-TCCAGACATGGTCTTACACTAGCTA-TC-ATTACGAG
* * * * *
23892161 GCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTG
1 GCCGATGCCATGTCC-AGACATGGTCTTACACTAGCTATCATTACGAG
*
23892209 GCCGATG-CATGTCCCAGACAT-GTTTTACACTAGCT
1 GCCGATGCCATGT-CCAGACATGGTCTTACACTAGCT
23892244 CACACAATTA
Statistics
Matches: 220, Mismatches: 29, Indels: 49
0.74 0.10 0.16
Matches are distributed among these distances:
44 16 0.07
45 14 0.06
46 29 0.13
47 25 0.11
48 83 0.38
49 24 0.11
50 27 0.12
51 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (47 bp):
GCCGATGCCATGTCCAGACATGGTCTTACACTAGCTATCATTACGAG
Found at i:23892216 original size:142 final size:142
Alignment explanation
Indices: 23891923--23892243 Score: 382
Period size: 142 Copynumber: 2.2 Consensus size: 142
23891913 GAGTAAGTAT
*
23891923 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTATCATTAACGAGGCCGATGCTATGTCCA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTATCATTAACGAGGCCGATGCCATGTCCA
* ** *
23891988 GACATGGTCTTACACTAGCTCTCGCATATCCGTGTCGATGCCATGTCCCAGACATGGTCTTACAC
64 GACATGGTCTTACACTAGCACTCGCATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACAC
23892053 TAACACATCTCGTA
129 TAACACATCTCGTA
* * * **
23892067 GCTGATGCTTGTCTCAGACATGTCTTACACTAGCT-T-ATGTCTCGAGGCCGATGCCATGTTCCA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTATCAT-TAACGAGGCCGATGCCATG-TCCA
* *
23892130 GACATGGTCTTACACTAGCACTCG-A-CTCAATGCCGATGCCATGTCCTAGACATGGTCTTACAC
64 GACATGGTCTTACACTAGCACTCGCATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACAC
** * * *
23892193 TGGCTC-TCATAATGTG
129 TAACACATC-T--CGTA
*
23892209 GCCGATGCATGTCCCAGACATGTTTTACACTAGCT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCT
23892244 CACACAATTA
Statistics
Matches: 151, Mismatches: 21, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
139 2 0.01
140 39 0.26
141 18 0.12
142 74 0.49
143 12 0.08
144 6 0.04
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (142 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTATCATTAACGAGGCCGATGCCATGTCCAGA
CATGGTCTTACACTAGCACTCGCATATCAATGCCGATGCCATGTCCCAGACATGGTCTTACACTA
ACACATCTCGTA
Found at i:23899887 original size:48 final size:48
Alignment explanation
Indices: 23899696--23899914 Score: 186
Period size: 48 Copynumber: 4.6 Consensus size: 48
23899686 CAACGAGGCT
* * * *
23899696 GATGCCATCT-CCAGACATGGTCTTACACTAGCTCTCGCATATCCATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACTCG-ATCT-CATGCC
* * * **
23899745 GATGTCATATCCCAGACATGGTCTTACACT-G-ACAC-ATCTCATAGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGATCTCAT-GCC
* * *
23899791 GATG-CATGTCCTAGACAT-GTCTTACACTAGC-TTACG-TCTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACT-CGATCTC-ATGCC
*
23899837 GATGCCATGTCCCAGACATGGTCTTACAATAGCACTCGA-CTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGATCTC-ATGCC
* *
23899885 GATGTCATGTCCCAGATATGGTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
23899915 GGCTCTCATA
Statistics
Matches: 138, Mismatches: 21, Indels: 23
0.76 0.12 0.13
Matches are distributed among these distances:
44 10 0.07
45 16 0.12
46 19 0.14
47 14 0.10
48 50 0.36
49 10 0.07
50 19 0.14
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCACTCGATCTCATGCC
Found at i:23899937 original size:142 final size:140
Alignment explanation
Indices: 23899689--23899964 Score: 353
Period size: 142 Copynumber: 1.9 Consensus size: 140
23899679 CTATCATCAA
* * * * *
23899689 CGAGGCTGATGCCATCTCCAGACATGGTCTTACACTAGCTCTCGCATATCCATGTCGATGTCATA
1 CGAGGCCGATGCCATCTCCAGACATGGTCTTACAATAGCACTCGCATATCAATGCCGATGTCATA
*
23899754 TCCCAGACATGGTCTTACACTGACACATCTCATAGTTGATGCATGTCCTAGACATGTCTTACACT
66 TCCCAGACATGGTCTTACACTGA-ACATCTCATAGTTGATGCATGTCCCAGACATGTCTTACACT
23899819 AGCTTACGTCT
130 AGCTTACGTCT
* *
23899830 CGAGGCCGATGCCATGTCCCAGACATGGTCTTACAATAGCACTCG-A-CTCAATGCCGATGTCAT
1 CGAGGCCGATGCCATCT-CCAGACATGGTCTTACAATAGCACTCGCATATCAATGCCGATGTCAT
* * *
23899893 GTCCCAGATATGGTCTTACACTG-GC-TCTCATAATGTGGTCGATGCATGTCCCAGACATGTCTT
65 ATCCCAGACATGGTCTTACACTGAACATCTCAT-A-GT--T-GATGCATGTCCCAGACATGTCTT
*
23899956 ATACTAGCT
125 ACACTAGCT
23899965 CACACAATTA
Statistics
Matches: 117, Mismatches: 12, Indels: 11
0.84 0.09 0.08
Matches are distributed among these distances:
137 6 0.05
138 2 0.02
139 2 0.02
140 35 0.30
141 17 0.15
142 55 0.47
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.29
Consensus pattern (140 bp):
CGAGGCCGATGCCATCTCCAGACATGGTCTTACAATAGCACTCGCATATCAATGCCGATGTCATA
TCCCAGACATGGTCTTACACTGAACATCTCATAGTTGATGCATGTCCCAGACATGTCTTACACTA
GCTTACGTCT
Found at i:23901450 original size:28 final size:28
Alignment explanation
Indices: 23901382--23901525 Score: 178
Period size: 28 Copynumber: 5.4 Consensus size: 28
23901372 GATATGACCT
*
23901382 TGTGCTAAGTGAAATAAGACCATGGC-A
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
23901409 --T-CTAAGTGAAATAAGTCCATGGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
* *
23901434 TGTGCTAAGTGAAATAAGTTCATGCCAA
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
* *
23901462 TGTGCTAAGTGAAATAAGTCTATAGCAA
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
*
23901490 ----CTAAGTGAAATAAGTCCATGGCAT
1 TGTGCTAAGTGAAATAAGTCCATGGCAA
23901514 TGTGCTAAGTGA
1 TGTGCTAAGTGA
23901526 GAAATTTCCC
Statistics
Matches: 99, Mismatches: 10, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
24 42 0.42
25 2 0.02
27 1 0.01
28 54 0.55
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (28 bp):
TGTGCTAAGTGAAATAAGTCCATGGCAA
Found at i:23901494 original size:52 final size:53
Alignment explanation
Indices: 23901385--23901525 Score: 157
Period size: 52 Copynumber: 2.7 Consensus size: 53
23901375 ATGACCTTGT
* * *
23901385 GCTAAGTGAAATAAGACCATGGC-A--T-CTAAGTGAAATAAGTCCATGGCAA
1 GCTAAGTGAAATAAGTCCATGCCAATGTGCTAAGTGAAATAAGTCCATAGCAA
* *
23901434 TGTGCTAAGTGAAATAAGTTCATGCCAATGTGCTAAGTGAAATAAGTCTATAGCAA
1 ---GCTAAGTGAAATAAGTCCATGCCAATGTGCTAAGTGAAATAAGTCCATAGCAA
* *
23901490 -CTAAGTGAAATAAGTCCATGGCATTGTGCTAAGTGA
1 GCTAAGTGAAATAAGTCCATGCCAATGTGCTAAGTGA
23901526 GAAATTTCCC
Statistics
Matches: 77, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
52 53 0.69
53 1 0.01
55 1 0.01
56 22 0.29
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.26
Consensus pattern (53 bp):
GCTAAGTGAAATAAGTCCATGCCAATGTGCTAAGTGAAATAAGTCCATAGCAA
Found at i:23901604 original size:51 final size:51
Alignment explanation
Indices: 23901549--23901798 Score: 430
Period size: 51 Copynumber: 4.9 Consensus size: 51
23901539 TGAACCTAAG
23901549 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* * *
23901600 GAATATAATAGCTTTGGGCACAAGTGTGGTACTATGTGAAGGTCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
*
23901651 GAATATAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
23901702 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
1 GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
* *
23901753 GAATAAAATAACTTTGG-CTACAAGGGTGGTACTATGTGAAGGCCAC
1 GAATAAAATAGCTTTGGAC-ACAAGTGTGGTACTATGTGAAGGCCAC
23901799 CGTGTATCCA
Statistics
Matches: 190, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
50 1 0.01
51 189 0.99
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.30
Consensus pattern (51 bp):
GAATAAAATAGCTTTGGACACAAGTGTGGTACTATGTGAAGGCCACTTTGT
Found at i:23905246 original size:46 final size:47
Alignment explanation
Indices: 23905180--23905274 Score: 156
Period size: 46 Copynumber: 2.0 Consensus size: 47
23905170 TATATAAGGT
*
23905180 ATAAATGCAAAAATGAAAGGGAAGATATAAGTGTAAAAAACTTATTAA
1 ATAAATGC-AAAATGAAAGGGAAGATATAAGTATAAAAAACTTATTAA
*
23905228 ATAAATGC-AAATGAAAGGGAAGATATAAGTATAAATAACTTATTAA
1 ATAAATGCAAAATGAAAGGGAAGATATAAGTATAAAAAACTTATTAA
23905274 A
1 A
23905275 GATAGAAACA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
46 37 0.82
48 8 0.18
ACGTcount: A:0.56, C:0.04, G:0.16, T:0.24
Consensus pattern (47 bp):
ATAAATGCAAAATGAAAGGGAAGATATAAGTATAAAAAACTTATTAA
Found at i:23909186 original size:2 final size:2
Alignment explanation
Indices: 23909179--23909207 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
23909169 ATAGTTTGAT
23909179 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
23909208 TGGCAATAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Done.