Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 77 of 295
Found at i:23909324 original size:3 final size:3
Alignment explanation
Indices: 23909316--23909353 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
23909306 CGCTTTGACT
23909316 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
23909354 CAATTTAACC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:23909398 original size:17 final size:18
Alignment explanation
Indices: 23909378--23909417 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
23909368 AATTATACTA
23909378 ACTTTCTT-CACTTTGAT
1 ACTTTCTTCCACTTTGAT
* *
23909395 ACTTTTTTCCACTTTTAT
1 ACTTTCTTCCACTTTGAT
23909413 ACTTT
1 ACTTT
23909418 AAACTTGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.17, C:0.23, G:0.03, T:0.57
Consensus pattern (18 bp):
ACTTTCTTCCACTTTGAT
Found at i:23910256 original size:17 final size:17
Alignment explanation
Indices: 23910234--23910266 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
23910224 TATTTAACCC
*
23910234 AAATTAAATTTAATTAA
1 AAATTAAAATTAATTAA
23910251 AAATTAAAATTAATTA
1 AAATTAAAATTAATTA
23910267 TATTATGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
AAATTAAAATTAATTAA
Found at i:23925243 original size:19 final size:19
Alignment explanation
Indices: 23925198--23925243 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
23925188 CTTACTTGAT
*
23925198 TTTCTAGAGACAAATTCTC
1 TTTCTAGGGACAAATTCTC
23925217 TTTCTAGGGACAAATTCTC
1 TTTCTAGGGACAAATTCTC
23925236 TTTCTAGG
1 TTTCTAGG
23925244 AAGACACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.26, C:0.20, G:0.15, T:0.39
Consensus pattern (19 bp):
TTTCTAGGGACAAATTCTC
Found at i:23927960 original size:37 final size:37
Alignment explanation
Indices: 23927910--23927988 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
23927900 TTATTACGAA
* * *
23927910 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
23927947 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
23927984 GTCTT
1 GTCTT
23927989 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:23928178 original size:47 final size:47
Alignment explanation
Indices: 23928107--23928517 Score: 662
Period size: 47 Copynumber: 8.7 Consensus size: 47
23928097 CCCTTCGGGA
* * * * * *
23928107 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
23928154 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23928201 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23928248 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23928295 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23928342 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATCAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23928389 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23928436 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
23928483 CTTATCACATATATATA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
23928518 AGAATCCTAA
Statistics
Matches: 347, Mismatches: 16, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
46 1 0.00
47 346 1.00
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:23928185 original size:25 final size:25
Alignment explanation
Indices: 23928157--23928235 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
23928147 ACTCGGCCCT
23928157 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
23928182 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
23928204 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
23928229 ATCACAT
1 ATCACAT
23928236 CGGCTATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:23933719 original size:39 final size:38
Alignment explanation
Indices: 23933675--23933761 Score: 102
Period size: 38 Copynumber: 2.3 Consensus size: 38
23933665 TATAATTGCC
*
23933675 ATAATTATAATAATGTTTGACCCAAAAATTACAATTACA
1 ATAATTATAATAATATTTGACCC-AAAATTACAATTACA
* * * * *
23933714 GTAATTATAATATTATTTGATCCTAAATTATAATTACA
1 ATAATTATAATAATATTTGACCCAAAATTACAATTACA
*
23933752 ATAGTTATAA
1 ATAATTATAA
23933762 CAAGGATTTC
Statistics
Matches: 40, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
38 21 0.52
39 19 0.47
ACGTcount: A:0.46, C:0.09, G:0.06, T:0.39
Consensus pattern (38 bp):
ATAATTATAATAATATTTGACCCAAAATTACAATTACA
Found at i:23943667 original size:55 final size:53
Alignment explanation
Indices: 23943566--23943813 Score: 238
Period size: 55 Copynumber: 4.7 Consensus size: 53
23943556 TTTAAGGATG
* **
23943566 CCATGTAAGACCATGCCAAGGCATGTAAATTGGTAAGGTTTC-TAAGGAAATGATA
1 CCATGTAAGACCATGCCAAGACATG-GCATTGGTAA-GTTTCATAAGGAAA-GATA
* * * * *
23943621 TCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGCAAAGGTC
1 CCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-ATAAGG-AAAGATA
* *
23943676 CCATGTAAGACCATGCCAAGACATGGCATTGGTGAG-TTCATAAGGCAAGAATA
1 CCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGAAAG-ATA
* * * *
23943729 CCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTTC--AA--AAGGATA
1 CCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGAAAGATA
* * * *
23943778 CCACGTAAGACCATGACAAGTCATGGCAATGGTAAG
1 CCATGTAAGACCATGCCAAGACATGGCATTGGTAAG
23943814 GTACCTGTGT
Statistics
Matches: 163, Mismatches: 25, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
49 35 0.21
50 2 0.01
52 5 0.03
53 44 0.27
54 13 0.08
55 61 0.37
56 3 0.02
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (53 bp):
CCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGAAAGATA
Found at i:23943765 original size:108 final size:110
Alignment explanation
Indices: 23943566--23943768 Score: 279
Period size: 108 Copynumber: 1.9 Consensus size: 110
23943556 TTTAAGGATG
* *
23943566 CCATGTAAGACCATGCCAAGGCATGTAAATTGGTAAGGTTTCTAAGGAAATGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGACATGTAAATTGGTAAGGTTTCTAAGGAAATGATACCATGTAAGA
*
23943631 CCATGTCAAGACATGGCATTGATAAGTTTCTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTTCTATAAGGCAAAGGTC
** * *
23943676 CCATGTAAGACCATGCCAAGACATG-GCATTGGTGA-G-TTCATAAGGCAA-GAATACCATGTAA
1 CCATGTAAGACCATGCCAAGACATGTAAATTGGTAAGGTTTC-TAAGGAAATG-ATACCATGTAA
* *
23943737 GACCATGTCGAGACATGGCAATGGTAAGTTTC
64 GACCATGTCAAGACATGGCAATGATAAGTTTC
23943769 AAAAGGATAC
Statistics
Matches: 82, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
107 4 0.05
108 47 0.57
109 7 0.09
110 24 0.29
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGACATGTAAATTGGTAAGGTTTCTAAGGAAATGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTTCTATAAGGCAAAGGTC
Found at i:23946390 original size:22 final size:22
Alignment explanation
Indices: 23946363--23946427 Score: 78
Period size: 21 Copynumber: 3.0 Consensus size: 22
23946353 CTTGCAGCTA
23946363 AGCTTTCAATTCTTTTAACTCT
1 AGCTTTCAATTCTTTTAACTCT
* * ** *
23946385 ATCTTTCAACTCTTGCAACT-A
1 AGCTTTCAATTCTTTTAACTCT
23946406 AGCTTTCAATTCTTTTAACTCT
1 AGCTTTCAATTCTTTTAACTCT
23946428 GTTGGAGCCA
Statistics
Matches: 32, Mismatches: 10, Indels: 2
0.73 0.23 0.05
Matches are distributed among these distances:
21 16 0.50
22 16 0.50
ACGTcount: A:0.25, C:0.25, G:0.05, T:0.46
Consensus pattern (22 bp):
AGCTTTCAATTCTTTTAACTCT
Found at i:23946413 original size:21 final size:21
Alignment explanation
Indices: 23946351--23946419 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
23946341 TTCTTAAATG
*
23946351 CTCTTGCAGCTAAGCTTTCAA
1 CTCTTGCAACTAAGCTTTCAA
* ** * *
23946372 TTCTTTTAACTCTATCTTTCAA
1 CTCTTGCAACT-AAGCTTTCAA
23946394 CTCTTGCAACTAAGCTTTCAA
1 CTCTTGCAACTAAGCTTTCAA
*
23946415 TTCTT
1 CTCTT
23946420 TTAACTCTGT
Statistics
Matches: 35, Mismatches: 12, Indels: 2
0.71 0.24 0.04
Matches are distributed among these distances:
21 19 0.54
22 16 0.46
ACGTcount: A:0.23, C:0.26, G:0.07, T:0.43
Consensus pattern (21 bp):
CTCTTGCAACTAAGCTTTCAA
Found at i:23947701 original size:20 final size:20
Alignment explanation
Indices: 23947676--23947720 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
23947666 AACCTCTTAC
23947676 ACATAATCTCTTCGGTAGAA
1 ACATAATCTCTTCGGTAGAA
*
23947696 ACATAATCTCTTTGGTAGAA
1 ACATAATCTCTTCGGTAGAA
23947716 ACATA
1 ACATA
23947721 TTCCCCAGCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (20 bp):
ACATAATCTCTTCGGTAGAA
Found at i:23957768 original size:42 final size:42
Alignment explanation
Indices: 23957656--23957816 Score: 155
Period size: 42 Copynumber: 3.8 Consensus size: 42
23957646 TACCATACCA
* *** * *
23957656 ATGCCATATCCCAAATATGGTCTTACA-TGGGATCTCGTATTG
1 ATGCCATATCCCAGATATGGTCTTACACAAAG-TCTCATATAG
* * * * * *
23957698 ATGACAATAGCCCAGCTATAGTCTTACACGAAGTCTCATATTG
1 ATG-CCATATCCCAGATATGGTCTTACACAAAGTCTCATATAG
**
23957741 ATGCCATATCTTAGATATGGTCTTACACAAAGTCTCATATAG
1 ATGCCATATCCCAGATATGGTCTTACACAAAGTCTCATATAG
*
23957783 ATGCCATATCCCAGATATGG-CTTACACATAGTCT
1 ATGCCATATCCCAGATATGGTCTTACACAAAGTCT
23957817 TAGTAACCTT
Statistics
Matches: 97, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
41 13 0.13
42 52 0.54
43 31 0.32
44 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACAAAGTCTCATATAG
Found at i:23966174 original size:20 final size:20
Alignment explanation
Indices: 23966149--23966223 Score: 60
Period size: 20 Copynumber: 3.4 Consensus size: 20
23966139 ATTGGAACTT
23966149 ATTAAATAAACTTAAGACAA
1 ATTAAATAAACTTAAGACAA
* * *
23966169 ATTAAATTGTTGAACTAATTAGAACAC
1 ATTAAA----TAAACT--TAAG-ACAA
23966196 ATTAAATAAACTTAAGACAA
1 ATTAAATAAACTTAAGACAA
23966216 ATTAAATA
1 ATTAAATA
23966224 CTTAAACTAA
Statistics
Matches: 42, Mismatches: 6, Indels: 14
0.68 0.10 0.23
Matches are distributed among these distances:
20 17 0.40
21 3 0.07
23 5 0.12
24 5 0.12
26 3 0.07
27 9 0.21
ACGTcount: A:0.55, C:0.09, G:0.07, T:0.29
Consensus pattern (20 bp):
ATTAAATAAACTTAAGACAA
Found at i:23966175 original size:47 final size:47
Alignment explanation
Indices: 23966114--23966233 Score: 186
Period size: 47 Copynumber: 2.6 Consensus size: 47
23966104 TGTAATAAGC
* **
23966114 TAAGACAAATTAAATAGTTGAACTAATTGGAACTTATTAAATAAACT
1 TAAGACAAATTAAATAGTTGAACTAATTAGAACACATTAAATAAACT
*
23966161 TAAGACAAATTAAATTGTTGAACTAATTAGAACACATTAAATAAACT
1 TAAGACAAATTAAATAGTTGAACTAATTAGAACACATTAAATAAACT
* *
23966208 TAAGACAAATTAAATACTTAAACTAA
1 TAAGACAAATTAAATAGTTGAACTAA
23966234 AATAACTAAA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 66 1.00
ACGTcount: A:0.52, C:0.10, G:0.08, T:0.30
Consensus pattern (47 bp):
TAAGACAAATTAAATAGTTGAACTAATTAGAACACATTAAATAAACT
Found at i:23969285 original size:18 final size:17
Alignment explanation
Indices: 23969264--23969320 Score: 68
Period size: 14 Copynumber: 3.5 Consensus size: 17
23969254 TTTCCTCTCT
23969264 TTTTTCTATTCTCTTTTC
1 TTTTTCT-TTCTCTTTTC
23969282 TTTTTCTTTCTC-TTTC
1 TTTTTCTTTCTCTTTTC
*
23969298 -TTTT-TTTCT-TGTTC
1 TTTTTCTTTCTCTTTTC
23969312 TTTTTCTTT
1 TTTTTCTTT
23969321 TGGTTTTTCC
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
14 8 0.23
15 8 0.23
16 7 0.20
17 5 0.14
18 7 0.20
ACGTcount: A:0.02, C:0.19, G:0.02, T:0.77
Consensus pattern (17 bp):
TTTTTCTTTCTCTTTTC
Found at i:23969288 original size:6 final size:6
Alignment explanation
Indices: 23969272--23969321 Score: 57
Period size: 6 Copynumber: 8.2 Consensus size: 6
23969262 CTTTTTTCTA
* *
23969272 TTCTCTT TTCTTT TTCTTT CTCTTT CTT-TTT TTCTTG TTCTTT TTCTTT
1 TTCT-TT TTCTTT TTCTTT TTCTTT -TTCTTT TTCTTT TTCTTT TTCTTT
23969321 T
1 T
23969322 GGTTTTTCCA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
5 2 0.05
6 30 0.81
7 5 0.14
ACGTcount: A:0.00, C:0.20, G:0.02, T:0.78
Consensus pattern (6 bp):
TTCTTT
Found at i:23969321 original size:17 final size:16
Alignment explanation
Indices: 23969264--23969321 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 16
23969254 TTTCCTCTCT
23969264 TTTTTCTATTCTCTTTTC
1 TTTTTCT-TT-TCTTTTC
*
23969282 TTTTTCTTTCTCTTTCTT
1 TTTTTCTTT-TCTTT-TC
23969300 TTTTTCTTGTTCTTTTTC
1 TTTTTCTT-TTC-TTTTC
23969318 TTTT
1 TTTT
23969322 GGTTTTTCCA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
17 8 0.23
18 23 0.66
19 4 0.11
ACGTcount: A:0.02, C:0.19, G:0.02, T:0.78
Consensus pattern (16 bp):
TTTTTCTTTTCTTTTC
Found at i:23969327 original size:24 final size:24
Alignment explanation
Indices: 23969277--23969329 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
23969267 TTCTATTCTC
* *
23969277 TTTTCTTTTTCTTTCTCTTTCTTT
1 TTTTCTTGTTCTTTCTCTTTCTGT
*
23969301 TTTTCTTGTTCTTTTTCTTT-TGGT
1 TTTTCTTGTTCTTTCTCTTTCT-GT
23969325 TTTTC
1 TTTTC
23969330 CATAGATTGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 1 0.04
24 24 0.96
ACGTcount: A:0.00, C:0.17, G:0.06, T:0.77
Consensus pattern (24 bp):
TTTTCTTGTTCTTTCTCTTTCTGT
Found at i:23971905 original size:48 final size:48
Alignment explanation
Indices: 23971838--23972239 Score: 678
Period size: 48 Copynumber: 8.4 Consensus size: 48
23971828 ACAGCTTGTA
23971838 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
1 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
* *
23971886 GTGAAATGTGAATGAGATATGTATATGTGGTAAAGCCGAATGGCTACT
1 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
* * *
23971934 GTGAAATATGAATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
* *
23971982 GTGAAATCTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
*
23972030 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
23972078 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
1 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
* * *
23972126 GTGAAATATGAATGAGATATATATATGTGGTAAAGCCGAATGGCTAGT
1 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
*
23972174 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
1 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
* *
23972222 GTGAAATATGTAGGAGAT
1 GTGAAATGTGTATGAGAT
23972240 GTGTGTATAT
Statistics
Matches: 340, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 340 1.00
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.30
Consensus pattern (48 bp):
GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
Found at i:23972430 original size:37 final size:37
Alignment explanation
Indices: 23972380--23972482 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
23972370 GGAAATATAT
23972380 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
23972417 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
23972454 TCCGGGTAAGATCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
23972483 GGACTATTCG
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 63 1.00
ACGTcount: A:0.23, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:23973814 original size:40 final size:40
Alignment explanation
Indices: 23973762--23974119 Score: 545
Period size: 40 Copynumber: 8.9 Consensus size: 40
23973752 TGAGAGTTAG
* *
23973762 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
23973802 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
* * *
23973842 ATATCCGGGCTAGGTCCCGAAGAGCATTTGAGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
* ** *
23973882 ATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCCAGTGAT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
23973922 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
* *
23973962 ATATCCGGGCTAGGTCCCGAAGAGCATTCGAGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
* *
23974002 ATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
* * *
23974042 ATATCAGGGTTAAGTCCCGAAGAGCATTCGAGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
* * *
23974082 ATATTCGGGCTAGGTCCCGAAGAGCATTCATGCTGGTG
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
23974120 ATGTGTATTT
Statistics
Matches: 285, Mismatches: 33, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 285 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
Found at i:23973975 original size:120 final size:120
Alignment explanation
Indices: 23973762--23974119 Score: 610
Period size: 120 Copynumber: 3.0 Consensus size: 120
23973752 TGAGAGTTAG
*
23973762 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGC
1 ATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGC
*
23973827 ATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCATTTGAGCTGGTGTT
66 ATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCATTCGAGCTGGTGTT
*
23973882 ATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCCAGTGATATATCCGGGCTAAGTCCCGAAGAGC
1 ATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGC
23973947 ATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCATTCGAGCTGGTGTT
66 ATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCATTCGAGCTGGTGTT
* * * * *
23974002 ATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTTATATCAGGGTTAAGTCCCGAAGAGC
1 ATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGC
* *
23974067 ATTCGAGCTGGTGTTATATTCGGGCTAGGTCCCGAAGAGCATTC-ATGCTGGTG
66 ATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCATTCGA-GCTGGTG
23974120 ATGTGTATTT
Statistics
Matches: 226, Mismatches: 11, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
119 1 0.00
120 225 1.00
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (120 bp):
ATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGC
ATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCATTCGAGCTGGTGTT
Found at i:23977728 original size:48 final size:48
Alignment explanation
Indices: 23977661--23978062 Score: 678
Period size: 48 Copynumber: 8.4 Consensus size: 48
23977651 ACAGCTTGTA
23977661 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
1 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
* *
23977709 GTGAAATGTGAATGAGATATGTATATGTGGTAAAGCCGAATGGCTACT
1 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
* * *
23977757 GTGAAATATGAATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
* *
23977805 GTGAAATCTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
*
23977853 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
23977901 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
1 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
* * *
23977949 GTGAAATATGAATGAGATATATATATGTGGTAAAGCCGAATGGCTAGT
1 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
*
23977997 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
1 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
* *
23978045 GTGAAATATGTAGGAGAT
1 GTGAAATGTGTATGAGAT
23978063 GTGTGTATAT
Statistics
Matches: 340, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 340 1.00
ACGTcount: A:0.34, C:0.06, G:0.29, T:0.30
Consensus pattern (48 bp):
GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
Found at i:23979599 original size:40 final size:40
Alignment explanation
Indices: 23979547--23979903 Score: 545
Period size: 40 Copynumber: 8.9 Consensus size: 40
23979537 TGAGAGTTAG
* *
23979547 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGAT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
23979587 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
* * *
23979627 ATATCCGGGCTAGGTCCCGAAGAGCATTTGAGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
* ** *
23979667 ATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCCAGTGAT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
23979707 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
*
23979747 ATATCCGGGCT-AGTCCCGAAGAGCATTCGAGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
* *
23979786 ATATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTGGAGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
* * *
23979826 ATATCAGGGTTAAGTCCCGAAGAGCATTCGAGCTGGTGTT
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
* * *
23979866 ATATTCGGGCTAGGTCCCGAAGAGCATTCATGCTGGTG
1 ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTG
23979904 ATGTGTATTT
Statistics
Matches: 285, Mismatches: 31, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
39 38 0.13
40 247 0.87
ACGTcount: A:0.22, C:0.21, G:0.30, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTT
Found at i:23983517 original size:48 final size:48
Alignment explanation
Indices: 23983450--23983816 Score: 518
Period size: 48 Copynumber: 7.4 Consensus size: 48
23983440 ACAGCTTGTA
23983450 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
1 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
* *
23983498 GTGAAATGTGAATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
* *
23983546 GTGAAATATGAATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGT
1 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGC----------TA-GT
*
23983605 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAAT
1 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
23983653 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
1 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
* * *
23983701 GTGAAATATGAATGAGATATATATATATGTGGTAAAGCCGAATGGCTAGT
1 GTGAAATGTGTATGAG--ATATGTATATGTGGTAAAGCCGAATGGCTAGT
*
23983751 GTGAAATATGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
1 GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
* *
23983799 GTGAAATATGTAGGAGAT
1 GTGAAATGTGTATGAGAT
23983817 GTGTGTATAT
Statistics
Matches: 292, Mismatches: 14, Indels: 26
0.88 0.04 0.08
Matches are distributed among these distances:
48 199 0.68
49 2 0.01
50 46 0.16
58 2 0.01
59 43 0.15
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.31
Consensus pattern (48 bp):
GTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAGT
Found at i:23983644 original size:107 final size:106
Alignment explanation
Indices: 23983496--23983809 Score: 500
Period size: 107 Copynumber: 3.0 Consensus size: 106
23983486 CGAATGGCTA
*
23983496 GTGTGAAATGTGAATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGAATGA
1 GTGTGAAATGTG-ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
*
23983561 GATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
65 GATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
*
23983603 GTGTGAAATGTGTATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATGTGTATGA
1 GTGTGAAATGTG-ATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGA
23983668 GATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATA-
65 GATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
* * *
23983709 ---TG-AA--TGA-GATATATATATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 GTGTGAAATGTGATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
23983767 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
66 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
23983808 GT
1 GT
23983810 AGGAGATGTG
Statistics
Matches: 196, Mismatches: 8, Indels: 12
0.91 0.04 0.06
Matches are distributed among these distances:
98 87 0.44
99 1 0.01
100 2 0.01
102 2 0.01
103 2 0.01
107 102 0.52
ACGTcount: A:0.35, C:0.06, G:0.29, T:0.31
Consensus pattern (106 bp):
GTGTGAAATGTGATGAGATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAG
ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATAT
Found at i:23983654 original size:28 final size:28
Alignment explanation
Indices: 23983564--23983654 Score: 80
Period size: 28 Copynumber: 3.1 Consensus size: 28
23983554 TGAATGAGAT
23983564 ATGTATATGTGGTAAAGCCGAATGGCTA
1 ATGTATATGTGGTAAAGCCGAATGGCTA
* * *
23983592 ATGTGAAATATGT-GTGAAATG-TGTATGAGAT-
1 ATGT---ATATGTGGT-AAA-GCCGAATG-GCTA
23983623 ATGTATATGTGGTAAAGCCGAATGGCTA
1 ATGTATATGTGGTAAAGCCGAATGGCTA
23983651 ATGT
1 ATGT
23983655 GAAATGTGTA
Statistics
Matches: 48, Mismatches: 6, Indels: 18
0.67 0.08 0.25
Matches are distributed among these distances:
27 3 0.06
28 21 0.44
29 2 0.04
30 2 0.04
31 17 0.35
32 3 0.06
ACGTcount: A:0.33, C:0.07, G:0.29, T:0.32
Consensus pattern (28 bp):
ATGTATATGTGGTAAAGCCGAATGGCTA
Found at i:23984010 original size:37 final size:37
Alignment explanation
Indices: 23983957--23984096 Score: 253
Period size: 37 Copynumber: 3.8 Consensus size: 37
23983947 GGAAATATAT
23983957 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
23983994 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
23984031 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
23984068 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
23984097 GGACTATTTG
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 99 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:23991886 original size:30 final size:29
Alignment explanation
Indices: 23991852--23991912 Score: 104
Period size: 30 Copynumber: 2.1 Consensus size: 29
23991842 AAACGGAAGT
23991852 TTTGGCACTAAGTGTGAGATTTAAACTAGC
1 TTTGGCACTAAGTGTGAGATTT-AACTAGC
*
23991882 TTTGGCACTAAGTGTGCGATTTAACTAGC
1 TTTGGCACTAAGTGTGAGATTTAACTAGC
23991911 TT
1 TT
23991913 CGGCTACTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 9 0.30
30 21 0.70
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (29 bp):
TTTGGCACTAAGTGTGAGATTTAACTAGC
Found at i:23993601 original size:61 final size:61
Alignment explanation
Indices: 23993506--23993627 Score: 244
Period size: 61 Copynumber: 2.0 Consensus size: 61
23993496 CAAATTCAAG
23993506 AATGCAACATCTCAACATATTCTCGAGTATCTGAATAATCCGTTCAGATTGACCATCTGTT
1 AATGCAACATCTCAACATATTCTCGAGTATCTGAATAATCCGTTCAGATTGACCATCTGTT
23993567 AATGCAACATCTCAACATATTCTCGAGTATCTGAATAATCCGTTCAGATTGACCATCTGTT
1 AATGCAACATCTCAACATATTCTCGAGTATCTGAATAATCCGTTCAGATTGACCATCTGTT
23993628 TGTGTAACAC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.31, C:0.23, G:0.13, T:0.33
Consensus pattern (61 bp):
AATGCAACATCTCAACATATTCTCGAGTATCTGAATAATCCGTTCAGATTGACCATCTGTT
Found at i:23995238 original size:29 final size:29
Alignment explanation
Indices: 23995204--23995277 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
23995194 TAATCAACCG
*
23995204 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAACT
**
23995233 CGCACACTTAGTGCCATGCATTTCAAGTT
1 CGCACACTTAGTGCCATGCATTTCAAACT
*
23995262 CGCACACCTAGTGCCA
1 CGCACACTTAGTGCCA
23995278 ATCTCACAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 3 0.08
29 37 0.93
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAACT
Found at i:24004092 original size:48 final size:46
Alignment explanation
Indices: 24003931--24004286 Score: 183
Period size: 46 Copynumber: 7.6 Consensus size: 46
24003921 TGATATGTGT
* * * * *
24003931 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCC--ACACTATGAGA
1 GCTAGTGTAAGACCTGTCTGGGACATGCATCGACCTGAGA-TAT-AAA
* * * * *
24003977 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCAGTGAGAT-GAAA
1 GCTAGTGTAAGACCTGTCTGGGACATGCATCGAC-CTGAGATATAAA
* *
24004023 GCTAGCGTAAGACATGTCTGGGACATGCATCGACCTCGAGATATACAA
1 GCTAGTGTAAGACCTGTCTGGGACATGCATCGACCT-GAGATATA-AA
* * * * * **
24004071 GCTAGTGTAAGACCTGTCTGGGACATGTCAT-AAGCT-TGTTCT-GT
1 GCTAGTGTAAGACCTGTCTGGGACATG-CATCGACCTGAGATATAAA
* * * *
24004115 G-TCAGTGTAAGACCTGT-TTGGACATGGCATCGACACTGATAGATGAGA
1 GCT-AGTGTAAGACCTGTCTGGGACAT-GCATCGAC-CTGAGATAT-AAA
* * * * *
24004163 GCCACTATAAGACCTGCCTGGGACATGGCATCGACCTCGATATATGAAA
1 GCTAGTGTAAGACCTGTCTGGGACAT-GCATCGACCT-GAGATAT-AAA
** * **
24004212 G-TCAGTGTAAGACCTGTCTGGGACATGGCATCGA-CTTTGATGTGCTA
1 GCT-AGTGTAAGACCTGTCTGGGACAT-GCATCGACCTGAGATAT-AAA
*
24004259 GCCAGTGTAAGACCATGTCTGGGACATG
1 GCTAGTGTAAGACC-TGTCTGGGACATG
24004287 GCGTCGGCAT
Statistics
Matches: 243, Mismatches: 47, Indels: 39
0.74 0.14 0.12
Matches are distributed among these distances:
43 11 0.05
44 17 0.07
45 3 0.01
46 74 0.30
47 19 0.08
48 60 0.25
49 59 0.24
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACCTGTCTGGGACATGCATCGACCTGAGATATAAA
Found at i:24004193 original size:49 final size:49
Alignment explanation
Indices: 24004134--24004246 Score: 156
Period size: 49 Copynumber: 2.3 Consensus size: 49
24004124 AGACCTGTTT
*
24004134 GGACATGGCATCGACACT-GATAGATGAGAGCCACTATAAGACCTGCCTG
1 GGACATGGCATCGAC-CTCGATAGATGAAAGCCACTATAAGACCTGCCTG
* * * * *
24004183 GGACATGGCATCGACCTCGATATATGAAAGTCAGTGTAAGACCTGTCTG
1 GGACATGGCATCGACCTCGATAGATGAAAGCCACTATAAGACCTGCCTG
24004232 GGACATGGCATCGAC
1 GGACATGGCATCGAC
24004247 TTTGATGTGC
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
48 2 0.04
49 55 0.96
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.20
Consensus pattern (49 bp):
GGACATGGCATCGACCTCGATAGATGAAAGCCACTATAAGACCTGCCTG
Found at i:24008292 original size:46 final size:46
Alignment explanation
Indices: 24008225--24008394 Score: 202
Period size: 46 Copynumber: 3.7 Consensus size: 46
24008215 TGTAACCCGC
*
24008225 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCAT
*
24008271 CCATAAGTGAACTCGGACTCAACTCAACGAGCTC-GG-ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGC-A--T
* *** * * *
24008317 ACATCTCTCGAACTCGAACTCAACTCAACGAGTTCAGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCAT
24008364 CCATAAGTGAACTCGGACTCAACTCAACGAG
1 CCATAAGTGAACTCGGACTCAACTCAACGAG
24008395 TTTGGATGCT
Statistics
Matches: 102, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 2 0.02
46 61 0.60
47 29 0.28
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGGCATTCGCAT
Found at i:24008345 original size:93 final size:93
Alignment explanation
Indices: 24008233--24008403 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
24008223 GCCCATAAGT
* * *
24008233 GAACTCGGACTCAACTCAACGAGCTCAGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
24008298 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
24008326 GAACTCGAACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
* *
24008391 CGAGTTTGGATGC
66 CGAGCTCGGATGC
24008404 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:24010698 original size:20 final size:19
Alignment explanation
Indices: 24010673--24010744 Score: 54
Period size: 20 Copynumber: 3.6 Consensus size: 19
24010663 CATTCCTGTT
24010673 GTTCATATGTATCAAACATG
1 GTTCAT-TGTATCAAACATG
* * ** *
24010693 GTTCATTTTGTCATTCCTATT
1 GTTCATTGTATCA-AAC-ATG
*
24010714 GTTCATATGTATCGAACATG
1 GTTCAT-TGTATCAAACATG
24010734 GTTCATTGTAT
1 GTTCATTGTAT
24010745 GGGATATTCT
Statistics
Matches: 38, Mismatches: 11, Indels: 7
0.68 0.20 0.12
Matches are distributed among these distances:
19 10 0.26
20 15 0.39
21 9 0.24
22 4 0.11
ACGTcount: A:0.25, C:0.15, G:0.15, T:0.44
Consensus pattern (19 bp):
GTTCATTGTATCAAACATG
Found at i:24010716 original size:41 final size:41
Alignment explanation
Indices: 24010658--24010740 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
24010648 TCTCGAATCG
*
24010658 TTTGTCATTCCTGTTGTTCATATGTATCAAACATGGTTCAT
1 TTTGTCATTCCTATTGTTCATATGTATCAAACATGGTTCAT
*
24010699 TTTGTCATTCCTATTGTTCATATGTATCGAACATGGTTCAT
1 TTTGTCATTCCTATTGTTCATATGTATCAAACATGGTTCAT
24010740 T
1 T
24010741 GTATGGGATA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.22, C:0.17, G:0.14, T:0.47
Consensus pattern (41 bp):
TTTGTCATTCCTATTGTTCATATGTATCAAACATGGTTCAT
Found at i:24014210 original size:49 final size:50
Alignment explanation
Indices: 24014106--24014238 Score: 144
Period size: 49 Copynumber: 2.7 Consensus size: 50
24014096 CTTGTTGTGT
* * * *
24014106 GTCAGTGTAAGACTTGTCTGGGACATGGCAT-TGACACCAATAGATGAGA
1 GTCAGTGTAAGACCTGTATGGGACATGGCATCGGACACCAATAGATGAAA
* * * * * *
24014155 GCCAGTGTAAGACCTGTTTGGGACATGGCATCGGGC-TCGATATATGAAA
1 GTCAGTGTAAGACCTGTATGGGACATGGCATCGGACACCAATAGATGAAA
*
24014204 GTCAGTGTAAGACCATGTATGGGACATGGCGTCGG
1 GTCAGTGTAAGACC-TGTATGGGACATGGCATCGG
24014239 CATCTTATCC
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
49 50 0.71
50 20 0.29
ACGTcount: A:0.27, C:0.17, G:0.32, T:0.24
Consensus pattern (50 bp):
GTCAGTGTAAGACCTGTATGGGACATGGCATCGGACACCAATAGATGAAA
Found at i:24016961 original size:20 final size:20
Alignment explanation
Indices: 24016910--24017000 Score: 51
Period size: 20 Copynumber: 4.5 Consensus size: 20
24016900 GTACAGACAG
* *
24016910 GGGCACGTAAGTACAATTCA
1 GGGCACGTAAGTACAAATAA
* ** *
24016930 GGGTACCAAAGTATAAATAA
1 GGGCACGTAAGTACAAATAA
* * *
24016950 GGGCACGTAAGTGCAATTTA
1 GGGCACGTAAGTACAAATAA
* *
24016970 GGGGATCG-AAGTACAAACATA
1 GGGCA-CGTAAGTACAAATA-A
24016991 -GGCACGTAAG
1 GGGCACGTAAG
24017001 CGCAATTCAA
Statistics
Matches: 49, Mismatches: 19, Indels: 6
0.66 0.26 0.08
Matches are distributed among these distances:
19 2 0.04
20 44 0.90
21 3 0.06
ACGTcount: A:0.38, C:0.15, G:0.27, T:0.19
Consensus pattern (20 bp):
GGGCACGTAAGTACAAATAA
Found at i:24016961 original size:81 final size:79
Alignment explanation
Indices: 24016809--24017015 Score: 193
Period size: 81 Copynumber: 2.6 Consensus size: 79
24016799 ATGCAATTTA
* * * * ** * *
24016809 GGGTACCGAAGTACAAACAGGGGCAGGTAACTATAATTCAGGGGGTGTCGAAGTACAATAGGGAA
1 GGGTACTGAAGTACAAACAGGGGCACGTAAGTACAATTCA--GGGTACCAAAGTAAAATAGGGAA
24016874 CATAAGTGAAATTCAG
64 CATAAGTGAAATTCAG
* *
24016890 GGGTACTGAAGTACAGACAGGGGCACGTAAGTACAATTCAGGGTACCAAAGTATAAATAAGGGCA
1 GGGTACTGAAGTACAAACAGGGGCACGTAAGTACAATTCAGGGTACCAAAGTA-AAAT-AGGGAA
* * *
24016955 CGTAAGTGCAATTTAG
64 CATAAGTGAAATTCAG
** **
24016971 GGG-A-TCGAAGTACAAACATAGGCACGTAAGCGCAATTCAAGGGTA
1 GGGTACT-GAAGTACAAACAGGGGCACGTAAGTACAATTC-AGGGTA
24017016 TAATTAAGTG
Statistics
Matches: 104, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
79 11 0.11
80 31 0.30
81 62 0.60
ACGTcount: A:0.37, C:0.15, G:0.29, T:0.18
Consensus pattern (79 bp):
GGGTACTGAAGTACAAACAGGGGCACGTAAGTACAATTCAGGGTACCAAAGTAAAATAGGGAACA
TAAGTGAAATTCAG
Found at i:24016982 original size:40 final size:41
Alignment explanation
Indices: 24016866--24017009 Score: 123
Period size: 40 Copynumber: 3.6 Consensus size: 41
24016856 TCGAAGTACA
* * * ** *
24016866 ATAGGGAACATAAGTGAAATTCAGGGGTACTGAAGTACAGAC
1 ATAGGGCACGTAAGTGCAATTCAGGGG-ACCAAAGTACAAAC
* * * * *
24016908 A-GGGGCACGTAAGTACAATTCAGGGTACCAAAGTATAAAT
1 ATAGGGCACGTAAGTGCAATTCAGGGGACCAAAGTACAAAC
* * *
24016948 A-AGGGCACGTAAGTGCAATTTAGGGGATCGAAGTACAAAC
1 ATAGGGCACGTAAGTGCAATTCAGGGGACCAAAGTACAAAC
*
24016988 ATA-GGCACGTAAGCGCAATTCA
1 ATAGGGCACGTAAGTGCAATTCA
24017010 AGGGTATAAT
Statistics
Matches: 80, Mismatches: 21, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
40 59 0.74
41 20 0.25
42 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.27, T:0.19
Consensus pattern (41 bp):
ATAGGGCACGTAAGTGCAATTCAGGGGACCAAAGTACAAAC
Found at i:24022259 original size:5 final size:5
Alignment explanation
Indices: 24022251--24022281 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
24022241 GAGAAGGAAT
24022251 TCGAA TCGAA TCGAA TCGAA TCGAA TCGAA T
1 TCGAA TCGAA TCGAA TCGAA TCGAA TCGAA T
24022282 ATATTTGTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (5 bp):
TCGAA
Found at i:24022841 original size:17 final size:17
Alignment explanation
Indices: 24022807--24022848 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 17
24022797 TTTTGAGGAA
*
24022807 AAATAAAAAGTTTTGGGG
1 AAAT-AAAAGTTTAGGGG
24022825 -AATAAAAGTTTGAGGGG
1 AAATAAAAGTTT-AGGGG
24022842 AAATAAA
1 AAATAAA
24022849 TAGGGGGAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 8 0.38
17 7 0.33
18 6 0.29
ACGTcount: A:0.50, C:0.00, G:0.26, T:0.24
Consensus pattern (17 bp):
AAATAAAAGTTTAGGGG
Found at i:24023183 original size:9 final size:9
Alignment explanation
Indices: 24023169--24023205 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
24023159 TATAGTTTGA
24023169 TATTCGAAT
1 TATTCGAAT
24023178 TATTCGAAT
1 TATTCGAAT
* *
24023187 TATTTGAGT
1 TATTCGAAT
24023196 TATTCGAAT
1 TATTCGAAT
24023205 T
1 T
24023206 CGAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.49
Consensus pattern (9 bp):
TATTCGAAT
Found at i:24027046 original size:54 final size:54
Alignment explanation
Indices: 24026980--24027084 Score: 183
Period size: 54 Copynumber: 1.9 Consensus size: 54
24026970 CACACAACTA
*
24026980 TGTGCCAGGCCGTGTAACACTCGAAATGACCTCACAGGCCTGTGTGTCAAGCCG
1 TGTGCCAGGCCGTGTAACACTCGAAATAACCTCACAGGCCTGTGTGTCAAGCCG
* *
24027034 TGTGCTAGGCCGTGTAACACTCGAAATAACCTCACAGGCCTGTTTGTCAAG
1 TGTGCCAGGCCGTGTAACACTCGAAATAACCTCACAGGCCTGTGTGTCAAG
24027085 TCGCATGGCC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.23
Consensus pattern (54 bp):
TGTGCCAGGCCGTGTAACACTCGAAATAACCTCACAGGCCTGTGTGTCAAGCCG
Found at i:24029328 original size:33 final size:34
Alignment explanation
Indices: 24029291--24029362 Score: 94
Period size: 33 Copynumber: 2.1 Consensus size: 34
24029281 ACTGGGCTTG
*
24029291 AGCCC-ATACTAGCAGCAATATCAGT-GGGGCCTT
1 AGCCCAATAC-AGCAGCAATAACAGTAGGGGCCTT
* *
24029324 AGCCCAATACAGTAGCAATAACAGTATGGGCCTT
1 AGCCCAATACAGCAGCAATAACAGTAGGGGCCTT
24029358 AGCCC
1 AGCCC
24029363 GATTCAGTAC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
33 18 0.53
34 16 0.47
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.19
Consensus pattern (34 bp):
AGCCCAATACAGCAGCAATAACAGTAGGGGCCTT
Found at i:24029360 original size:34 final size:32
Alignment explanation
Indices: 24029283--24029376 Score: 93
Period size: 33 Copynumber: 2.8 Consensus size: 32
24029273 TTGAATAGAC
* *
24029283 TGGG-CTTGAGCCCATACTAGCAGCAATATCAGT
1 TGGGCCTT-AGCCCATAC-AGTAGCAATAACAGT
*
24029316 GGGGCCTTAGCCCAATACAGTAGCAATAACAGT
1 TGGGCCTTAGCCC-ATACAGTAGCAATAACAGT
*
24029349 ATGGGCCTTAGCCCGATTCAGTA-CAATA
1 -TGGGCCTTAGCCC-ATACAGTAGCAATA
24029377 TCAGAAATGC
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
33 26 0.50
34 26 0.50
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.22
Consensus pattern (32 bp):
TGGGCCTTAGCCCATACAGTAGCAATAACAGT
Found at i:24047627 original size:26 final size:26
Alignment explanation
Indices: 24047598--24047705 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
24047588 TGGTACAAAT
24047598 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
24047624 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
24047650 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
24047676 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
24047702 TGAT
1 TGAT
24047706 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:24049215 original size:26 final size:26
Alignment explanation
Indices: 24049186--24049238 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
24049176 TTTACAGTTT
24049186 TACCCCTAGTGGGTAAA-TTACCGAAA
1 TACCCCTAG-GGGTAAATTTACCGAAA
* *
24049212 TACCCCTAGGGTTAAATTTACCTAAA
1 TACCCCTAGGGGTAAATTTACCGAAA
24049238 T
1 T
24049239 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (26 bp):
TACCCCTAGGGGTAAATTTACCGAAA
Found at i:24051095 original size:50 final size:50
Alignment explanation
Indices: 24051020--24051245 Score: 217
Period size: 50 Copynumber: 4.5 Consensus size: 50
24051010 TGAATACACG
* * *
24051020 TGTGTAGTACTAAGTTCAGGCTACTACGTGTACCATACTGTTAAGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
* * * ** *
24051070 TGTGTAGTACTAAGTGCAGACTACTATGCGTACTCAATGACT-TCGA-TCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-C-A-GACTGTTAAGTCACA
* * * * *
24051121 TGTGTAGTACTAAGTGCAGGATACTACGTGTATCAGA-TGGTGAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GTTAAGTCACA
* * * *
24051171 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATTGTT-GGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
*
24051220 TGTGTAGTACAAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
24051246 TGCGTATCAG
Statistics
Matches: 145, Mismatches: 24, Indels: 15
0.79 0.13 0.08
Matches are distributed among these distances:
47 1 0.01
48 2 0.01
49 32 0.22
50 71 0.49
51 33 0.23
52 3 0.02
53 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCACA
Found at i:24051149 original size:28 final size:27
Alignment explanation
Indices: 24051118--24051201 Score: 81
Period size: 28 Copynumber: 3.2 Consensus size: 27
24051108 GACTTCGATC
24051118 ACGTGTGTAGTACTAAGTGCAGGATACT
1 ACGTGTGTAGTACTAAGTGCAGG-TACT
* *
24051146 ACGTGTATCAG-A-T-GGTG-AGGT-C-
1 ACGTGTGT-AGTACTAAGTGCAGGTACT
24051168 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGG-TACT
24051196 ACGTGT
1 ACGTGT
24051202 ACCGGATTGT
Statistics
Matches: 44, Mismatches: 4, Indels: 16
0.69 0.06 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.18
23 2 0.05
24 4 0.09
25 6 0.14
26 4 0.09
27 2 0.05
28 14 0.32
29 2 0.05
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (27 bp):
ACGTGTGTAGTACTAAGTGCAGGTACT
Found at i:24059525 original size:50 final size:50
Alignment explanation
Indices: 24059419--24059540 Score: 129
Period size: 50 Copynumber: 2.4 Consensus size: 50
24059409 TTATGTCATG
* * * * *
24059419 CATTATGTAACTCATATGTTAATTAAGTTTGCAGCTTAAATTATGTCATG
1 CATTATGAAACTCATATGTTAAATAAGTTTGCAGCTTAAATTAAGCCATA
* * *
24059469 CATTATGAAACTCATATGTTAAATAAGTTTTCA-TTTTAATTAAGCCATA
1 CATTATGAAACTCATATGTTAAATAAGTTTGCAGCTTAAATTAAGCCATA
* * *
24059518 CATTTATGCATCTTATATGTTAA
1 CA-TTATGAAACTCATATGTTAA
24059541 TTATGTTTAA
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
49 13 0.22
50 47 0.78
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.43
Consensus pattern (50 bp):
CATTATGAAACTCATATGTTAAATAAGTTTGCAGCTTAAATTAAGCCATA
Found at i:24060063 original size:33 final size:31
Alignment explanation
Indices: 24059983--24060098 Score: 117
Period size: 31 Copynumber: 3.7 Consensus size: 31
24059973 AAGCTTGCTT
* *
24059983 ATTTAATTATGTCTTGCGTTATATGTTTAAC
1 ATTTAATTATGTCTTGCATTATGTGTTTAAC
*
24060014 ATTTAATTATGACTTGCATTATGTGTTTGAATC
1 ATTTAATTATGTCTTGCATTATGTGTTT-AA-C
** *
24060047 -TTTAAATTATGTCTTGCATTATGTGAGTAGC
1 ATTT-AATTATGTCTTGCATTATGTGTTTAAC
* * *
24060078 ATTTAATGAAGTCATGCATTA
1 ATTTAATTATGTCTTGCATTA
24060099 AAGCATCCCA
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
31 40 0.56
32 9 0.13
33 22 0.31
ACGTcount: A:0.28, C:0.09, G:0.16, T:0.47
Consensus pattern (31 bp):
ATTTAATTATGTCTTGCATTATGTGTTTAAC
Found at i:24060322 original size:29 final size:25
Alignment explanation
Indices: 24060262--24060311 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
24060252 ACTCATTTGT
*
24060262 TCATTTAGTTTGCATCTTAATTAAA
1 TCATTTAGTTTGCATATTAATTAAA
24060287 TCATTTAGTTTGCATATTAATTAAA
1 TCATTTAGTTTGCATATTAATTAAA
24060312 CCATGCATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.34, C:0.10, G:0.08, T:0.48
Consensus pattern (25 bp):
TCATTTAGTTTGCATATTAATTAAA
Found at i:24069604 original size:18 final size:18
Alignment explanation
Indices: 24069581--24069615 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
24069571 GAAATGTTTC
*
24069581 GATATATCTGGTAATACG
1 GATATATCCGGTAATACG
24069599 GATATATCCGGTAATAC
1 GATATATCCGGTAATAC
24069616 CTCTTAACCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.31
Consensus pattern (18 bp):
GATATATCCGGTAATACG
Found at i:24070815 original size:41 final size:41
Alignment explanation
Indices: 24070763--24070845 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
24070753 GGCCATGTAG
24070763 CATGACCGTGTGTCCCACACAGCTGAGACACATGCCCATGT
1 CATGACCGTGTGTCCCACACAGCTGAGACACATGCCCATGT
24070804 CATGACCGTGTGTCCCACACAGCTGAGACACATGCCCATGT
1 CATGACCGTGTGTCCCACACAGCTGAGACACATGCCCATGT
24070845 C
1 C
24070846 TCTGCACGTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.24, C:0.35, G:0.22, T:0.19
Consensus pattern (41 bp):
CATGACCGTGTGTCCCACACAGCTGAGACACATGCCCATGT
Found at i:24074800 original size:19 final size:19
Alignment explanation
Indices: 24074778--24074815 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
24074768 TGGACCTAAG
*
24074778 ATAGTAAATTAGGCCTGGC
1 ATAGTAAATTAGACCTGGC
24074797 ATAGTAAATTAGACCTGGC
1 ATAGTAAATTAGACCTGGC
24074816 CCAAAACCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (19 bp):
ATAGTAAATTAGACCTGGC
Found at i:24077783 original size:39 final size:39
Alignment explanation
Indices: 24077740--24077815 Score: 143
Period size: 39 Copynumber: 1.9 Consensus size: 39
24077730 TTAGTTTGTG
24077740 TCTTTAATTATGTCATAGTTTGAACATCATTAATATGAA
1 TCTTTAATTATGTCATAGTTTGAACATCATTAATATGAA
*
24077779 TCTTTAATTATGTCATAGTTTGAACATTATTAATATG
1 TCTTTAATTATGTCATAGTTTGAACATCATTAATATG
24077816 TGTTCTGCAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.46
Consensus pattern (39 bp):
TCTTTAATTATGTCATAGTTTGAACATCATTAATATGAA
Found at i:24077894 original size:50 final size:52
Alignment explanation
Indices: 24077830--24077951 Score: 153
Period size: 50 Copynumber: 2.4 Consensus size: 52
24077820 CTGCATTTAA
*
24077830 TAAAGTCATGCATTATGTAACTCTCC-TGTAAGTT-AAGTTTGCATCAT-AAAT
1 TAAA-TCATGCATTATGTAACTC-CCATATAAGTTAAAGTTTGCATCATCAAAT
* *
24077881 TATGA-CATGCATTATGTAACTCCCATATTAGTTAAAGTTTGCATCATCAAAT
1 TA-AATCATGCATTATGTAACTCCCATATAAGTTAAAGTTTGCATCATCAAAT
*
24077933 TAAATCATGCATTAAGTAA
1 TAAATCATGCATTATGTAA
24077952 TTCATTTGTT
Statistics
Matches: 61, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
49 2 0.03
50 23 0.38
51 16 0.26
52 20 0.33
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (52 bp):
TAAATCATGCATTATGTAACTCCCATATAAGTTAAAGTTTGCATCATCAAAT
Found at i:24079285 original size:20 final size:21
Alignment explanation
Indices: 24079251--24079293 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
24079241 AATTTTTACT
*
24079251 TTTCATAATCTCAATATCGCA
1 TTTCATAATCTCAATATCACA
24079272 TTTCATAA-CTCAATATCACA
1 TTTCATAATCTCAATATCACA
24079292 TT
1 TT
24079294 CACTTCAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.35, C:0.23, G:0.02, T:0.40
Consensus pattern (21 bp):
TTTCATAATCTCAATATCACA
Found at i:24082444 original size:15 final size:15
Alignment explanation
Indices: 24082421--24082452 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
24082411 GAGAAAAAGA
24082421 TGAGATGAGGTGAGG
1 TGAGATGAGGTGAGG
*
24082436 TGAGTTGAGGTGAGG
1 TGAGATGAGGTGAGG
24082451 TG
1 TG
24082453 TGCAACCGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.22, C:0.00, G:0.53, T:0.25
Consensus pattern (15 bp):
TGAGATGAGGTGAGG
Found at i:24085122 original size:2 final size:2
Alignment explanation
Indices: 24085115--24085139 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
24085105 TTTCCTGCCA
24085115 CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT C
24085140 CCTCATATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:24090070 original size:44 final size:44
Alignment explanation
Indices: 24090007--24090094 Score: 149
Period size: 44 Copynumber: 2.0 Consensus size: 44
24089997 AGCTGCTGGA
* *
24090007 GATTTTAGCCATTGGAATAATTAATCTCTAACATTTAATGAACT
1 GATTTTAGCCATCGGAATAATTAATATCTAACATTTAATGAACT
*
24090051 GATTTTAGCCATCGGAATAATTAATATTTAACATTTAATGAACT
1 GATTTTAGCCATCGGAATAATTAATATCTAACATTTAATGAACT
24090095 ATGTAGGGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.38, C:0.12, G:0.11, T:0.39
Consensus pattern (44 bp):
GATTTTAGCCATCGGAATAATTAATATCTAACATTTAATGAACT
Found at i:24094428 original size:42 final size:42
Alignment explanation
Indices: 24094331--24094482 Score: 166
Period size: 43 Copynumber: 3.5 Consensus size: 42
24094321 TATCCTATAT
* *
24094331 GACCAAGTCTGGGACGTTGGCATCG-ACTTATAATTTATGTGTAA
1 GACCACGTCTGGGACGTTGGCATCGTA-TT-TAATTT-CGTGTAA
*
24094375 GACCACGTCTGGAACGTTGGCATCGTATTTAATTTCGTGTAA
1 GACCACGTCTGGGACGTTGGCATCGTATTTAATTTCGTGTAA
* * * *
24094417 GACC-CTGTCTGGGACAG-TGGCATCAATATTTGATTACATGTAA
1 GACCAC-GTCTGGGAC-GTTGGCATC-GTATTTAATTTCGTGTAA
24094460 GACCACGTCTGGGACGTTGGCAT
1 GACCACGTCTGGGACGTTGGCAT
24094483 TGTACGAGAT
Statistics
Matches: 94, Mismatches: 8, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
41 1 0.01
42 26 0.28
43 40 0.43
44 26 0.28
45 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (42 bp):
GACCACGTCTGGGACGTTGGCATCGTATTTAATTTCGTGTAA
Found at i:24099935 original size:20 final size:20
Alignment explanation
Indices: 24099912--24099957 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
24099902 TAAGCTCGAT
*
24099912 TGAGCTCAACCGAGCTGAAA
1 TGAGCTCAAACGAGCTGAAA
* *
24099932 TGAGCTCAAATGAGCTGAAT
1 TGAGCTCAAACGAGCTGAAA
24099952 TGAGCT
1 TGAGCT
24099958 GGACGGAGCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.20, G:0.26, T:0.22
Consensus pattern (20 bp):
TGAGCTCAAACGAGCTGAAA
Found at i:24099936 original size:10 final size:10
Alignment explanation
Indices: 24099923--24099958 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
24099913 GAGCTCAACC
24099923 GAGCTGAAAT
1 GAGCTGAAAT
*
24099933 GAGCTCAAAT
1 GAGCTGAAAT
*
24099943 GAGCTGAATT
1 GAGCTGAAAT
24099953 GAGCTG
1 GAGCTG
24099959 GACGGAGCTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (10 bp):
GAGCTGAAAT
Found at i:24102037 original size:19 final size:20
Alignment explanation
Indices: 24102013--24102053 Score: 75
Period size: 19 Copynumber: 2.1 Consensus size: 20
24102003 TTGTTCACTT
24102013 TCTTTTCTTTGTTT-TTCTC
1 TCTTTTCTTTGTTTCTTCTC
24102032 TCTTTTCTTTGTTTCTTCTC
1 TCTTTTCTTTGTTTCTTCTC
24102052 TC
1 TC
24102054 GATTTCATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.00, C:0.24, G:0.05, T:0.71
Consensus pattern (20 bp):
TCTTTTCTTTGTTTCTTCTC
Found at i:24103031 original size:9 final size:9
Alignment explanation
Indices: 24103008--24103042 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
24102998 ATAAAACACC
24103008 TTTTTTTCTA
1 TTTTTTT-TA
*
24103018 ATTTTTTTA
1 TTTTTTTTA
24103027 TTTTTTTTA
1 TTTTTTTTA
24103036 TTTTTTT
1 TTTTTTT
24103043 AATATACTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 17 0.74
10 6 0.26
ACGTcount: A:0.11, C:0.03, G:0.00, T:0.86
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:24104342 original size:33 final size:33
Alignment explanation
Indices: 24104304--24104369 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
24104294 TGGACAAAAG
24104304 TATGGTAAGGTTGGTCCTAAGAACAAGTTGAAC
1 TATGGTAAGGTTGGTCCTAAGAACAAGTTGAAC
24104337 TATGGTAAGGTTGGTCCTAAGAACAAGTTGAAC
1 TATGGTAAGGTTGGTCCTAAGAACAAGTTGAAC
24104370 CGATATTATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.27
Consensus pattern (33 bp):
TATGGTAAGGTTGGTCCTAAGAACAAGTTGAAC
Found at i:24105513 original size:20 final size:20
Alignment explanation
Indices: 24105490--24105528 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
24105480 TAAGCTCGGT
*
24105490 TGAGCTCAACCGAGCTAAAA
1 TGAGCTCAAACGAGCTAAAA
*
24105510 TGAGCTCAAATGAGCTAAA
1 TGAGCTCAAACGAGCTAAA
24105529 TTGAACTGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.21, G:0.21, T:0.18
Consensus pattern (20 bp):
TGAGCTCAAACGAGCTAAAA
Found at i:24107614 original size:19 final size:20
Alignment explanation
Indices: 24107590--24107630 Score: 75
Period size: 19 Copynumber: 2.1 Consensus size: 20
24107580 TTGTTCACTT
24107590 TCTTTTCTTTGTTT-TTCTC
1 TCTTTTCTTTGTTTCTTCTC
24107609 TCTTTTCTTTGTTTCTTCTC
1 TCTTTTCTTTGTTTCTTCTC
24107629 TC
1 TC
24107631 GATTTCATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.00, C:0.24, G:0.05, T:0.71
Consensus pattern (20 bp):
TCTTTTCTTTGTTTCTTCTC
Found at i:24107704 original size:14 final size:15
Alignment explanation
Indices: 24107678--24107719 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
24107668 TTTTCTTGCC
*
24107678 TCTCTTTTCTTTTGA
1 TCTCTTTTCTTTTCA
24107693 TCTCTTTT-TTTTCA
1 TCTCTTTTCTTTTCA
*
24107707 TCT-TGTTCTTTTC
1 TCTCTTTTCTTTTC
24107720 TTGTTTTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 3 0.12
14 13 0.54
15 8 0.33
ACGTcount: A:0.05, C:0.21, G:0.05, T:0.69
Consensus pattern (15 bp):
TCTCTTTTCTTTTCA
Found at i:24109931 original size:15 final size:16
Alignment explanation
Indices: 24109900--24109932 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
24109890 AACCTACAAA
24109900 TAAATAAACACATAAT
1 TAAATAAACACATAAT
*
24109916 TAAATAAA-ATATAAT
1 TAAATAAACACATAAT
24109931 TA
1 TA
24109933 TTCATATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (16 bp):
TAAATAAACACATAAT
Found at i:24110210 original size:20 final size:20
Alignment explanation
Indices: 24110172--24110217 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
24110162 TAAGCTCGGT
* *
24110172 TGAGCTCAACCGAGTTGAAA
1 TGAGCTCAAACGAGCTGAAA
* *
24110192 TGAGCTCAAATGAGCTGAAT
1 TGAGCTCAAACGAGCTGAAA
24110212 TGAGCT
1 TGAGCT
24110218 GGACGGAGCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (20 bp):
TGAGCTCAAACGAGCTGAAA
Found at i:24110360 original size:17 final size:17
Alignment explanation
Indices: 24110338--24110382 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
24110328 AGATCTCCGG
24110338 CGAGCTTCCAACCCAAT
1 CGAGCTTCCAACCCAAT
* *
24110355 CGAGCTTTCAACCCGAT
1 CGAGCTTCCAACCCAAT
*
24110372 CAAGCTTCCAA
1 CGAGCTTCCAA
24110383 TAATCTGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.29, C:0.38, G:0.13, T:0.20
Consensus pattern (17 bp):
CGAGCTTCCAACCCAAT
Found at i:24113348 original size:45 final size:44
Alignment explanation
Indices: 24113244--24113348 Score: 103
Period size: 45 Copynumber: 2.4 Consensus size: 44
24113234 AATATTATAC
24113244 AATTT-TTTTAA-ATTATTAAGAATAAATTAAAATTAATTTTGA
1 AATTTATTTTAATATTATTAAGAATAAATTAAAATTAATTTTGA
**
24113286 AATTGTA-AATAATTATTATTAA-AATTAAATTAAAATTAAATATTT-A
1 AATT-TATTTTAA-TATTATTAAGAA-TAAATTAAAATT-AAT-TTTGA
*
24113332 TATTTATTTTAATATTA
1 AATTTATTTTAATATTA
24113349 AATGAAAATA
Statistics
Matches: 50, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
42 4 0.08
43 4 0.08
44 2 0.04
45 27 0.54
46 10 0.20
47 3 0.06
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (44 bp):
AATTTATTTTAATATTATTAAGAATAAATTAAAATTAATTTTGA
Found at i:24113363 original size:25 final size:24
Alignment explanation
Indices: 24113335--24113383 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
24113325 ATATTTATAT
* *
24113335 TTATTTTAATATTAAATGAAAATAA
1 TTATATTAATATAAAAT-AAAATAA
24113360 TTATATTAATATAAAATAAAATAA
1 TTATATTAATATAAAATAAAATAA
24113384 AACTCTTCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (24 bp):
TTATATTAATATAAAATAAAATAA
Found at i:24114005 original size:21 final size:21
Alignment explanation
Indices: 24113955--24114010 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 21
24113945 TTTGAATAGT
24113955 AAATTTTAATTATTTATATAATA
1 AAATTTT-A-TATTTATATAATA
24113978 ATTAATTTTATATTTCATAT-ATA
1 A--AATTTTATATTT-ATATAATA
24114001 AAATTTTATA
1 AAATTTTATA
24114011 AATAATATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
21 9 0.30
23 10 0.33
24 5 0.17
25 6 0.20
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (21 bp):
AAATTTTATATTTATATAATA
Found at i:24114542 original size:22 final size:22
Alignment explanation
Indices: 24114517--24114591 Score: 71
Period size: 22 Copynumber: 3.3 Consensus size: 22
24114507 TATTATTTTG
24114517 AATAAGATTCTTTTGTATTAAA
1 AATAAGATTCTTTTGTATTAAA
* ***
24114539 AATAAG-TATCTTAATTATTATTTTG
1 AATAAGAT-TCTT--TT-GTATTAAA
24114564 AATAAGATTCTTTTGTATTAAA
1 AATAAGATTCTTTTGTATTAAA
24114586 AATAAG
1 AATAAG
24114592 TATATTATAT
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
21 1 0.03
22 20 0.50
23 2 0.05
24 2 0.05
25 14 0.35
26 1 0.03
ACGTcount: A:0.41, C:0.04, G:0.09, T:0.45
Consensus pattern (22 bp):
AATAAGATTCTTTTGTATTAAA
Found at i:24114555 original size:47 final size:47
Alignment explanation
Indices: 24114501--24114594 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
24114491 AATTATATTA
24114501 CTTAATTATTATTTTGAATAAGATTCTTTTGTATTAAAAATAAGTAT
1 CTTAATTATTATTTTGAATAAGATTCTTTTGTATTAAAAATAAGTAT
24114548 CTTAATTATTATTTTGAATAAGATTCTTTTGTATTAAAAATAAGTAT
1 CTTAATTATTATTTTGAATAAGATTCTTTTGTATTAAAAATAAGTAT
24114595 ATTATATATT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.38, C:0.04, G:0.09, T:0.49
Consensus pattern (47 bp):
CTTAATTATTATTTTGAATAAGATTCTTTTGTATTAAAAATAAGTAT
Found at i:24114567 original size:25 final size:25
Alignment explanation
Indices: 24114501--24114575 Score: 77
Period size: 25 Copynumber: 3.1 Consensus size: 25
24114491 AATTATATTA
24114501 CTTAATTATTATTTTGAATAAGATT
1 CTTAATTATTATTTTGAATAAGATT
* ***
24114526 CTT--TT-GTATTAAAAATAAG-TAT
1 CTTAATTATTATTTTGAATAAGAT-T
24114548 CTTAATTATTATTTTGAATAAGATT
1 CTTAATTATTATTTTGAATAAGATT
24114573 CTT
1 CTT
24114576 TTGTATTAAA
Statistics
Matches: 37, Mismatches: 8, Indels: 10
0.67 0.15 0.18
Matches are distributed among these distances:
21 1 0.03
22 14 0.38
23 2 0.05
24 2 0.05
25 17 0.46
26 1 0.03
ACGTcount: A:0.36, C:0.05, G:0.08, T:0.51
Consensus pattern (25 bp):
CTTAATTATTATTTTGAATAAGATT
Found at i:24114582 original size:25 final size:25
Alignment explanation
Indices: 24114507--24114583 Score: 74
Period size: 25 Copynumber: 3.2 Consensus size: 25
24114497 ATTACTTAAT
24114507 TATTATTTTGAATAAGATTCTTTTG
1 TATTATTTTGAATAAGATTCTTTTG
** *
24114532 TATTA---AAAATAAG-TATCTTAAT-
1 TATTATTTTGAATAAGAT-TCTT-TTG
24114554 TATTATTTTGAATAAGATTCTTTTG
1 TATTATTTTGAATAAGATTCTTTTG
24114579 TATTA
1 TATTA
24114584 AAAATAAGTA
Statistics
Matches: 39, Mismatches: 6, Indels: 14
0.66 0.10 0.24
Matches are distributed among these distances:
21 1 0.03
22 15 0.38
23 1 0.03
24 1 0.03
25 20 0.51
26 1 0.03
ACGTcount: A:0.35, C:0.04, G:0.09, T:0.52
Consensus pattern (25 bp):
TATTATTTTGAATAAGATTCTTTTG
Found at i:24117911 original size:24 final size:24
Alignment explanation
Indices: 24117884--24117931 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
24117874 AAAGCTGTCT
24117884 TTATCATTCTAATCATATCTTTTG
1 TTATCATTCTAATCATATCTTTTG
24117908 TTATCATTCTAATCATATCTTTTG
1 TTATCATTCTAATCATATCTTTTG
24117932 GACATTCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.04, T:0.54
Consensus pattern (24 bp):
TTATCATTCTAATCATATCTTTTG
Found at i:24124082 original size:33 final size:33
Alignment explanation
Indices: 24124040--24124107 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
24124030 AAGTTAAATG
24124040 ATAGGTTTATAAGCTCAATTGTTAAATAGGACT
1 ATAGGTTTATAAGCTCAATTGTTAAATAGGACT
24124073 ATAGGTTTATAAGCTCAATTGTTAAATAGGACT
1 ATAGGTTTATAAGCTCAATTGTTAAATAGGACT
24124106 AT
1 AT
24124108 TTTGTAAAGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.37, C:0.09, G:0.18, T:0.37
Consensus pattern (33 bp):
ATAGGTTTATAAGCTCAATTGTTAAATAGGACT
Found at i:24126859 original size:36 final size:36
Alignment explanation
Indices: 24126808--24126891 Score: 134
Period size: 36 Copynumber: 2.3 Consensus size: 36
24126798 AATCCTACCA
* *
24126808 AAACACACCAGATGCTCATAAGAGCT-AGTCCATTCG
1 AAACACACCAAATGCTCATAAGAGCTCA-TCCATCCG
24126844 AAACACACCAAATGCTCATAAGAGCTCATCCATCCG
1 AAACACACCAAATGCTCATAAGAGCTCATCCATCCG
24126880 AAACACACCAAA
1 AAACACACCAAA
24126892 ATAGAGAGTA
Statistics
Matches: 45, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
36 44 0.98
37 1 0.02
ACGTcount: A:0.42, C:0.31, G:0.12, T:0.15
Consensus pattern (36 bp):
AAACACACCAAATGCTCATAAGAGCTCATCCATCCG
Found at i:24136317 original size:53 final size:53
Alignment explanation
Indices: 24136249--24136455 Score: 200
Period size: 53 Copynumber: 3.8 Consensus size: 53
24136239 TTCCTTTTTA
* * *
24136249 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCTTTATC
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCTTTATC
* * * * * *
24136302 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATC
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCTTTATC
** * * * * * *
24136355 GTAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTACCTTGTA-A
1 --AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT-GCTT-TATC
* *
24136411 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
24136456 AAACCCTAAT
Statistics
Matches: 121, Mismatches: 29, Indels: 7
0.77 0.18 0.04
Matches are distributed among these distances:
53 46 0.38
54 37 0.31
55 34 0.28
56 2 0.02
57 2 0.02
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (53 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCTTTATC
Found at i:24149096 original size:39 final size:40
Alignment explanation
Indices: 24149053--24149221 Score: 220
Period size: 40 Copynumber: 4.3 Consensus size: 40
24149043 GGACTAAGAT
* * *
24149053 CCGAAGGTATTTGTGCG-GTTATT-AATTCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTC
* * ** *
24149092 CCGAAGGCCTTTGTGCGAGATACT-AATTCCGGG-TAAGTC
1 CCGAAGGCATTCGTGCGAG-TTTTAAAATCCGGGTTAAGTC
24149131 CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
24149171 CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
24149211 CCGAAGGCATT
1 CCGAAGGCATT
24149222 GAATGAGTTA
Statistics
Matches: 117, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
38 2 0.02
39 46 0.39
40 68 0.58
41 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
Found at i:24149162 original size:79 final size:79
Alignment explanation
Indices: 24149053--24149221 Score: 218
Period size: 79 Copynumber: 2.1 Consensus size: 79
24149043 GGACTAAGAT
* * * * *
24149053 CCGAAGGTATTTGTGCGGTTATTAATTCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACT-A
1 CCGAAGGCATTCGTGCGGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TACTAA
*
24149117 ATTCCGGG-TAAGTC
65 AATCCGGGTTAAGTC
**
24149131 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTA
1 CCGAAGGCATTCGTGCG-GTTATT-AAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTACTA
24149195 AAATCCGGGTTAAGTC
64 AAATCCGGGTTAAGTC
24149211 CCGAAGGCATT
1 CCGAAGGCATT
24149222 GAATGAGTTA
Statistics
Matches: 79, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
78 19 0.24
79 43 0.54
80 17 0.22
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTACTAAA
ATCCGGGTTAAGTC
Found at i:24152412 original size:89 final size:89
Alignment explanation
Indices: 24152309--24152488 Score: 360
Period size: 89 Copynumber: 2.0 Consensus size: 89
24152299 AAAGCTATCA
24152309 GACTTGTCCAGAATAAATCAACAAGTTAGAGGGCCAAAGAGTAAAATTTATCCAATTTAATTTAT
1 GACTTGTCCAGAATAAATCAACAAGTTAGAGGGCCAAAGAGTAAAATTTATCCAATTTAATTTAT
24152374 TAATTTAAAACCCAAATTATTAAT
66 TAATTTAAAACCCAAATTATTAAT
24152398 GACTTGTCCAGAATAAATCAACAAGTTAGAGGGCCAAAGAGTAAAATTTATCCAATTTAATTTAT
1 GACTTGTCCAGAATAAATCAACAAGTTAGAGGGCCAAAGAGTAAAATTTATCCAATTTAATTTAT
24152463 TAATTTAAAACCCAAATTATTAAT
66 TAATTTAAAACCCAAATTATTAAT
24152487 GA
1 GA
24152489 AATATTTTAA
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 91 1.00
ACGTcount: A:0.44, C:0.13, G:0.12, T:0.31
Consensus pattern (89 bp):
GACTTGTCCAGAATAAATCAACAAGTTAGAGGGCCAAAGAGTAAAATTTATCCAATTTAATTTAT
TAATTTAAAACCCAAATTATTAAT
Found at i:24160002 original size:47 final size:47
Alignment explanation
Indices: 24159951--24160126 Score: 309
Period size: 47 Copynumber: 3.7 Consensus size: 47
24159941 TTAGGATTCT
* *
24159951 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
24159998 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
24160045 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
24160092 ATGTGATGAATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
24160127 TCCCGAAGGG
Statistics
Matches: 125, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
46 1 0.01
47 124 0.99
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:24160301 original size:37 final size:37
Alignment explanation
Indices: 24160245--24160323 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
24160235 CCGAGCTCTA
* * *
24160245 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
24160282 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
24160319 AAGAC
1 AAGAC
24160324 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:24162191 original size:29 final size:30
Alignment explanation
Indices: 24162124--24162238 Score: 107
Period size: 29 Copynumber: 4.0 Consensus size: 30
24162114 TACATACATG
* *
24162124 CATATAGCCCA-CTAGGCCCAA-TCTTATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
* *
24162152 CAAATGACCCATCT-GGCCCAATTCATATT
1 CATATGGCCCATCTAGGCCCAATTCATATT
* * **
24162181 CTTATGGCCCA-CTACGCCCAATTCACCTT
1 CATATGGCCCATCTAGGCCCAATTCATATT
24162210 CATATGGCCCAT-TAGGCCCAAATT-ATATT
1 CATATGGCCCATCTAGGCCC-AATTCATATT
24162239 ATACTCATGC
Statistics
Matches: 68, Mismatches: 14, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
28 17 0.25
29 47 0.69
30 4 0.06
ACGTcount: A:0.28, C:0.32, G:0.11, T:0.29
Consensus pattern (30 bp):
CATATGGCCCATCTAGGCCCAATTCATATT
Found at i:24162344 original size:19 final size:18
Alignment explanation
Indices: 24162311--24162347 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
24162301 TGGGCCCAAC
24162311 AGCCCATCAGGCCCATTT
1 AGCCCATCAGGCCCATTT
*
24162329 AGCCCATTCCGGCCCATTT
1 AGCCCA-TCAGGCCCATTT
24162348 GGTCAATTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.19, C:0.41, G:0.16, T:0.24
Consensus pattern (18 bp):
AGCCCATCAGGCCCATTT
Found at i:24162501 original size:16 final size:16
Alignment explanation
Indices: 24162482--24162512 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24162472 TTGACTTTTT
24162482 GGCTTCTCGGCATTTC
1 GGCTTCTCGGCATTTC
*
24162498 GGCTTTTCGGCATTT
1 GGCTTCTCGGCATTT
24162513 GCCGATTCAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.06, C:0.26, G:0.26, T:0.42
Consensus pattern (16 bp):
GGCTTCTCGGCATTTC
Found at i:24169918 original size:29 final size:29
Alignment explanation
Indices: 24169837--24169951 Score: 99
Period size: 29 Copynumber: 4.0 Consensus size: 29
24169827 TACATACATG
* *
24169837 CATATAGCCCACTAGGCCCAA-TCTTATT
1 CATATGGCCCACTAGGCCCAATTCATATT
* * * *
24169865 CAAATGACCCATCT-GGCCTAGTTCATATT
1 CATATGGCCCA-CTAGGCCCAATTCATATT
* **
24169894 CTTATGGCCCACTAGGCCCAATTCACCTT
1 CATATGGCCCACTAGGCCCAATTCATATT
* * *
24169923 CATATGGCCCATTAAGCCCAAATCATATT
1 CATATGGCCCACTAGGCCCAATTCATATT
24169952 ATACTCATGC
Statistics
Matches: 65, Mismatches: 19, Indels: 5
0.73 0.21 0.06
Matches are distributed among these distances:
28 15 0.23
29 50 0.77
ACGTcount: A:0.28, C:0.31, G:0.12, T:0.29
Consensus pattern (29 bp):
CATATGGCCCACTAGGCCCAATTCATATT
Found at i:24170199 original size:24 final size:24
Alignment explanation
Indices: 24170172--24170217 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
24170162 CTAACTTTCA
24170172 GCTTTTCAGCATTTCAGCTTTTTG
1 GCTTTTCAGCATTTCAGCTTTTTG
* *
24170196 GCTTTTCGGCATTTCGGCTTTT
1 GCTTTTCAGCATTTCAGCTTTT
24170218 GCGATTCATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.09, C:0.22, G:0.20, T:0.50
Consensus pattern (24 bp):
GCTTTTCAGCATTTCAGCTTTTTG
Found at i:24170202 original size:16 final size:16
Alignment explanation
Indices: 24170167--24170217 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 16
24170157 ATAGCCTAAC
* *
24170167 TTTCAGCTTTTCAGCA
1 TTTCAGCTTTTCGGCT
*
24170183 TTTCAGCTTTTTGGCT
1 TTTCAGCTTTTCGGCT
* *
24170199 TTTCGGCATTTCGGCT
1 TTTCAGCTTTTCGGCT
24170215 TTT
1 TTT
24170218 GCGATTCATT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.10, C:0.22, G:0.18, T:0.51
Consensus pattern (16 bp):
TTTCAGCTTTTCGGCT
Found at i:24178184 original size:27 final size:27
Alignment explanation
Indices: 24178142--24178193 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
24178132 ACCCATTTAA
* *
24178142 TAAAATGACTGTTATGCCCCTATGAGG
1 TAAAATAACTGATATGCCCCTATGAGG
*
24178169 TAAAATAACTGATATGTCCCTATGA
1 TAAAATAACTGATATGCCCCTATGA
24178194 TTTGTATGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (27 bp):
TAAAATAACTGATATGCCCCTATGAGG
Found at i:24184345 original size:132 final size:131
Alignment explanation
Indices: 24184033--24184428 Score: 747
Period size: 131 Copynumber: 3.0 Consensus size: 131
24184023 ACCCAAGGAG
*
24184033 GCGATACGACAACAATACCCTCATCTATTTTGACAGGTAAATTTTGAGGCCGAAATTTTATTTTA
1 GCGATACGACAACAATACCCTCATCTGTTTTGACAGGTAAATTTTGAGGCCGAAATTTTATTTTA
24184098 GGGGGTAGAGTTGTAATGCCCCAAATCTTTAATAATTTTTTTGTGTGTTGTGTTGCATAAATGCA
66 GGGGGTAGAGTTGTAATGCCCCAAATCTTTAATAATTTTTTTGTGTGTTGTGTTGCATAAATGCA
24184163 T
131 T
*
24184164 GCGATACGACAACAATACCCTCATCTGTTTTGACAGGTAAATTTTGAGGCTGAAATTTTATTTTA
1 GCGATACGACAACAATACCCTCATCTGTTTTGACAGGTAAATTTTGAGGCCGAAATTTTATTTTA
24184229 GGGGGTAGAGTTGTAATGCCCCAAATCTTTAATAATTTTTTTTGTGTGTTGTGTTGCATAAATGC
66 GGGGGTAGAGTTGTAATGCCCCAAATCTTTAATAA-TTTTTTTGTGTGTTGTGTTGCATAAATGC
24184294 AT
130 AT
*
24184296 GCGATACGACAACAATACCCTCATCTGTTTTGACAGGTAAATTTCGAGGCCGAAATTTTATTTTA
1 GCGATACGACAACAATACCCTCATCTGTTTTGACAGGTAAATTTTGAGGCCGAAATTTTATTTTA
*
24184361 GGGGGTAGAGTTGTAATGCCCCAAATCTTTAATAATTTTTTTGTTTGTTGTGTTGCATAAATGCA
66 GGGGGTAGAGTTGTAATGCCCCAAATCTTTAATAATTTTTTTGTGTGTTGTGTTGCATAAATGCA
24184426 T
131 T
24184427 GC
1 GC
24184429 TTGCTTCAGT
Statistics
Matches: 259, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
131 130 0.50
132 129 0.50
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.38
Consensus pattern (131 bp):
GCGATACGACAACAATACCCTCATCTGTTTTGACAGGTAAATTTTGAGGCCGAAATTTTATTTTA
GGGGGTAGAGTTGTAATGCCCCAAATCTTTAATAATTTTTTTGTGTGTTGTGTTGCATAAATGCA
T
Found at i:24186547 original size:33 final size:34
Alignment explanation
Indices: 24186487--24186562 Score: 113
Period size: 33 Copynumber: 2.3 Consensus size: 34
24186477 TGCATTCTGT
*
24186487 ACTG-TACTGTTACTGAATTGGGCTAAGG-CTTA
1 ACTGATACTGTTACTGAATTGGGCTAAGGCCCTA
24186519 CACTGATACTGTTACTGAA-TGGGCTAAGGCCCTA
1 -ACTGATACTGTTACTGAATTGGGCTAAGGCCCTA
24186553 ACTGATACTG
1 ACTGATACTG
24186563 GACTAATACT
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
33 24 0.60
34 16 0.40
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.30
Consensus pattern (34 bp):
ACTGATACTGTTACTGAATTGGGCTAAGGCCCTA
Found at i:24190995 original size:81 final size:81
Alignment explanation
Indices: 24190872--24191034 Score: 326
Period size: 81 Copynumber: 2.0 Consensus size: 81
24190862 TGTAGCCAAG
24190872 CTACCATGTAACCCGCCCATAAGCGAACTTGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 CTACCATGTAACCCGCCCATAAGCGAACTTGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
24190937 TAAGTGAACTCGGACT
66 TAAGTGAACTCGGACT
24190953 CTACCATGTAACCCGCCCATAAGCGAACTTGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 CTACCATGTAACCCGCCCATAAGCGAACTTGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
24191018 TAAGTGAACTCGGACT
66 TAAGTGAACTCGGACT
24191034 C
1 C
24191035 AACTCAACGA
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 82 1.00
ACGTcount: A:0.27, C:0.31, G:0.21, T:0.21
Consensus pattern (81 bp):
CTACCATGTAACCCGCCCATAAGCGAACTTGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
TAAGTGAACTCGGACT
Found at i:24191135 original size:93 final size:93
Alignment explanation
Indices: 24190976--24191237 Score: 418
Period size: 93 Copynumber: 2.8 Consensus size: 93
24190966 CGCCCATAAG
* * *
24190976 CGAACTTGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
* *
24191041 ACGATCTCGGATGCCTAGTTACATTTCA
66 ACGAGCTCGGATGCCTAGTTACATCTCA
* *
24191069 CGAACTCGAACTCAACTCAACT-AGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAA-TGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTC
*
24191133 AACAAGCTCGGATGCCTAGTTACATCTCA
65 AACGAGCTCGGATGCCTAGTTACATCTCA
*
24191162 CGAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAATTCA
1 CGAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
24191227 ACGAGTTCGGA
66 ACGAGCTCGGA
24191238 CGTTCGCATC
Statistics
Matches: 154, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
92 1 0.01
93 152 0.99
94 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGCTCGGATGCCTAGTTACATCTCA
Found at i:24191191 original size:47 final size:47
Alignment explanation
Indices: 24191023--24191191 Score: 170
Period size: 47 Copynumber: 3.6 Consensus size: 47
24191013 ATCCATAAGT
*
24191023 GAACTCGGACTCAACTCAACGA-TCTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGT-TCGGATGCCTAGTTACATCTCAC
* * * * *
24191070 GAACTCGAACTCAACTCAACTAGTTCGGA---C-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-C
* *
24191116 GAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
*
24191163 GAACTCGGACTCAACTCAATGAGTTCGGA
1 GAACTCGGACTCAACTCAACGAGTTCGGA
24191192 CGTTCGCATC
Statistics
Matches: 97, Mismatches: 15, Indels: 20
0.73 0.11 0.15
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 26 0.27
47 51 0.53
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.23
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:24191280 original size:46 final size:46
Alignment explanation
Indices: 24190969--24191280 Score: 287
Period size: 46 Copynumber: 6.7 Consensus size: 46
24190959 TGTAACCCGC
* * * * *
24190969 CCATAAGCGAACTTGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * * *
24191015 CCATAAGTGAACTCGGACTCAACTCAACGA-TCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGT-TCGGACG-TTCGCAT
* * * * * *
24191061 ACATTTCA-CGAACTCGAACTCAACTCAACTAGTTCGGACATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
* * *
24191108 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTTCGCAT
* * *
24191158 -C-TCA-CGAACTCGGACTCAACTCAATGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
24191201 CCATAAGTGAACTCGGACTCAATTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
*
24191247 CCATAAGTGAACTCGGACTCAACTCAACAAGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
24191281 AGATGCCCAA
Statistics
Matches: 211, Mismatches: 39, Indels: 32
0.75 0.14 0.11
Matches are distributed among these distances:
42 3 0.01
43 3 0.01
44 2 0.01
45 4 0.02
46 131 0.62
47 56 0.27
48 5 0.02
49 2 0.01
50 3 0.01
51 2 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
Found at i:24194241 original size:18 final size:18
Alignment explanation
Indices: 24194218--24194255 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
24194208 CAGTGAAAAG
24194218 AAAAAGGCAATTCTCTTC
1 AAAAAGGCAATTCTCTTC
24194236 AAAAAGGCAATTCTCTTC
1 AAAAAGGCAATTCTCTTC
24194254 AA
1 AA
24194256 CTCTTACCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.42, C:0.21, G:0.11, T:0.26
Consensus pattern (18 bp):
AAAAAGGCAATTCTCTTC
Found at i:24196189 original size:19 final size:19
Alignment explanation
Indices: 24196156--24196195 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
24196146 AAAATATCAT
*
24196156 ATTAATTTTAATTAATTTG
1 ATTAATTTTAATTAACTTG
24196175 ATTAA-TTTAATTTAACTTG
1 ATTAATTTTAA-TTAACTTG
24196194 AT
1 AT
24196196 CAAAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.38, C:0.03, G:0.05, T:0.55
Consensus pattern (19 bp):
ATTAATTTTAATTAACTTG
Found at i:24202994 original size:44 final size:43
Alignment explanation
Indices: 24202944--24203102 Score: 164
Period size: 43 Copynumber: 3.7 Consensus size: 43
24202934 TATGTGTTAT
* *
24202944 CGTGTAAGACCACGTTTGGGACATTGGCATTGATTTGTGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATTT-TGATTTA
* * *
24202988 CGTGTAAGACCATGTTTGGGACATTGGCATCG-TATATGATTT-
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGAT-TTTGATTTA
* *
24203030 CGTGTAAGACC-CTGTCTGGGACAATGGCATCAATATTTGA-TTA
1 CGTGTAAGACCAC-GTCTGGGACATTGGCATCGAT-TTTGATTTA
* * *
24203073 CATGTAAGACCACATCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACATTGGCAT
24203103 TATACGAGCT
Statistics
Matches: 98, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
42 29 0.30
43 37 0.38
44 32 0.33
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATTTTGATTTA
Found at i:24203071 original size:86 final size:85
Alignment explanation
Indices: 24202943--24203102 Score: 198
Period size: 86 Copynumber: 1.9 Consensus size: 85
24202933 ATATGTGTTA
* * ** * ** *
24202943 TCGTGTAAGACCACGTTTGGGACATTGGCATTGATTTGTGATTTACGTGTAAGACCATGTTTGGG
1 TCGTGTAAGACCACGTCTGGGACAATGGCATCAATTTGTGA-TTACATGTAAGACCACATCTGGG
24203008 ACATTGGCATCGTATATGATT
65 ACATTGGCATCGTATATGATT
24203029 TCGTGTAAGACC-CTGTCTGGGACAATGGCATCAATATT-TGATTACATGTAAGACCACATCTGG
1 TCGTGTAAGACCAC-GTCTGGGACAATGGCATCAAT-TTGTGATTACATGTAAGACCACATCTGG
*
24203092 GACGTTGGCAT
64 GACATTGGCAT
24203103 TATACGAGCT
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
85 29 0.46
86 32 0.51
87 2 0.03
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.33
Consensus pattern (85 bp):
TCGTGTAAGACCACGTCTGGGACAATGGCATCAATTTGTGATTACATGTAAGACCACATCTGGGA
CATTGGCATCGTATATGATT
Found at i:24203303 original size:21 final size:22
Alignment explanation
Indices: 24203264--24203307 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
24203254 AAAGAATGTT
24203264 ATGTGATGTATATGGAAATGAA
1 ATGTGATGTATATGGAAATGAA
* *
24203286 ATGTGA-GTATGTGTAAATGAA
1 ATGTGATGTATATGGAAATGAA
24203307 A
1 A
24203308 CATGAATAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.41, C:0.00, G:0.27, T:0.32
Consensus pattern (22 bp):
ATGTGATGTATATGGAAATGAA
Found at i:24205977 original size:41 final size:41
Alignment explanation
Indices: 24205932--24206014 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
24205922 ATTCAGATTA
*
24205932 TGCAAAGACATTGTTATAGAAGAAGTTAACCCTGACTAAAT
1 TGCAAAGACATTGTTATAGAAGAAGTTAACCCTAACTAAAT
*
24205973 TGCAAAGACATTGTTATAGAAGAAGTTAGCCCTAACTAAAT
1 TGCAAAGACATTGTTATAGAAGAAGTTAACCCTAACTAAAT
24206014 T
1 T
24206015 ATCTATTCAG
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.28
Consensus pattern (41 bp):
TGCAAAGACATTGTTATAGAAGAAGTTAACCCTAACTAAAT
Found at i:24210727 original size:86 final size:85
Alignment explanation
Indices: 24210599--24210758 Score: 218
Period size: 86 Copynumber: 1.9 Consensus size: 85
24210589 ATATGTGTTA
* * *
24210599 TCGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGTGATTTACGTGTAAGACCATGTCTGGG
1 TCGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGTGA-TTACATGTAAGACCACGCCTGGG
24210664 ACATTGGCATCGTATATGATT
65 ACATTGGCATCGTATATGATT
*
24210685 TCGTGTAAGACTC-TGTCTGGGACAG-TGGCATCGATATT-TGATTACATGTAAGACCACGCCTG
1 TCGTGTAAGAC-CACGTCTGGGAC-GTTGGCATCGAT-TTGTGATTACATGTAAGACCACGCCTG
*
24210747 GGACGTTGGCAT
63 GGACATTGGCAT
24210759 TGTACCAGCT
Statistics
Matches: 66, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
85 29 0.44
86 33 0.50
87 4 0.06
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.31
Consensus pattern (85 bp):
TCGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGTGATTACATGTAAGACCACGCCTGGGA
CATTGGCATCGTATATGATT
Found at i:24210748 original size:43 final size:43
Alignment explanation
Indices: 24210600--24210758 Score: 191
Period size: 43 Copynumber: 3.7 Consensus size: 43
24210590 TATGTGTTAT
24210600 CGTGTAAGACCACGTCTGGGACGTTGGCATCGAT-TTGTGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATT-TGA-TTA
* * * *
24210644 CGTGTAAGACCATGTCTGGGACATTGGCATCG-TATATGATTT
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
*
24210686 CGTGTAAGACTC-TGTCTGGGACAG-TGGCATCGATATTTGATTA
1 CGTGTAAGAC-CACGTCTGGGAC-GTTGGCATCGATATTTGATTA
* *
24210729 CATGTAAGACCACGCCTGGGACGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACGTTGGCAT
24210759 TGTACCAGCT
Statistics
Matches: 99, Mismatches: 10, Indels: 13
0.81 0.08 0.11
Matches are distributed among these distances:
42 32 0.32
43 36 0.36
44 31 0.31
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTA
Found at i:24211191 original size:56 final size:56
Alignment explanation
Indices: 24211105--24211224 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
24211095 ACAAGGGATG
24211105 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAAAAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAAAAAAATAAGAAGC
* *
24211161 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAAAAAAATAAGAAGC
24211217 ATGGGCAA
1 ATGGGCAA
24211225 TAAACTAATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.46, C:0.09, G:0.23, T:0.22
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAAAAAAATAAGAAGC
Found at i:24212623 original size:47 final size:47
Alignment explanation
Indices: 24212491--24213040 Score: 804
Period size: 47 Copynumber: 11.6 Consensus size: 47
24212481 TATTTGAATA
*
24212491 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
24212540 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
24212589 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
24212636 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
24212683 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
24212732 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
24212779 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
24212826 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
24212873 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
24212920 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
24212967 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
24213014 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
24213041 TCCCGAAGGG
Statistics
Matches: 475, Mismatches: 22, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 368 0.77
49 105 0.22
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:24212918 original size:22 final size:22
Alignment explanation
Indices: 24212891--24213012 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
24212881 CATGTGTATG
24212891 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
24212913 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
24212938 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
24212960 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
24212985 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
24213007 TGTGAT
1 TGTGAT
24213013 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:24215404 original size:40 final size:39
Alignment explanation
Indices: 24215320--24215688 Score: 169
Period size: 40 Copynumber: 9.3 Consensus size: 39
24215310 TCGAATGATG
* * *
24215320 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTATA
* *
24215360 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTATA
* *
24215400 TCCGGGCTAAG-CCTGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGCGAGTTACTATA
* ** * * *
24215439 TCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTA
1 TCCGGGCTAAGT-CCGAAG-GCATTTGTGCGAGTTACTATA
** ** * *
24215479 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTTGTGA-TGTA
1 TCCGGGCTAAGT-CCGAAG-GCATTTGTGCGAGTTACTATA
* ** * * *
24215519 TTCGGGCTAAGTCTCGAAGAGCATTCATGCTAGTGA-TGTA
1 TCCGGGCTAAGTC-CGAAG-GCATTTGTGCGAGTTACTATA
** * * *
24215559 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGA-TGTA
1 TCCGGGCTAAG-TCCGAAG-GCATTTGTGCGAGTTACTATA
* ** * * *
24215599 TCCAGGCTAAGTTCCGAAGAGCATTCATGCTAGTGA-TGTA
1 TCCGGGCTAAG-TCCGAAG-GCATTTGTGCGAGTTACTATA
* * * *
24215639 TCCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGA-TATA
1 TCCGGGCTAAG-TCCGAAG-GCATTTGTGCGAGTTACTATA
*
24215679 TCCGTGCTAA
1 TCCGGGCTAA
24215689 ACCCCGAAGA
Statistics
Matches: 294, Mismatches: 27, Indels: 16
0.87 0.08 0.05
Matches are distributed among these distances:
38 2 0.01
39 33 0.11
40 235 0.80
41 24 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTATA
Found at i:24215699 original size:40 final size:40
Alignment explanation
Indices: 24215438--24215757 Score: 442
Period size: 40 Copynumber: 8.0 Consensus size: 40
24215428 GAGTTACTAA
*
24215438 ATCCGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
24215478 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTTGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
24215518 ATTCGGGCTAAGTCTCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
24215558 ATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
24215598 ATCCAGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
24215638 ATCCGGGCTAAGTTCCAAAGAGCATTCGTGCTAGTGATAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* ** * * * * *
24215678 ATCCGTGCTAAACCCCGAAGAGAATTCGTGCTGGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * *
24215718 ATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
24215758 GTATTCGGGC
Statistics
Matches: 250, Mismatches: 30, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 250 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:24218474 original size:47 final size:47
Alignment explanation
Indices: 24218342--24218891 Score: 804
Period size: 47 Copynumber: 11.6 Consensus size: 47
24218332 TATTTGAATA
*
24218342 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
24218391 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
24218440 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
24218487 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
24218534 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
24218583 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
24218630 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
24218677 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
24218724 AATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
24218771 AATGTGAACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
24218818 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
24218865 GATGTGGAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
24218892 TCCCGAAGGG
Statistics
Matches: 475, Mismatches: 22, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 368 0.77
49 105 0.22
50 1 0.00
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
Done.