Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 80 of 295
Found at i:24880130 original size:11 final size:11
Alignment explanation
Indices: 24880105--24880155 Score: 86
Period size: 11 Copynumber: 4.6 Consensus size: 11
24880095 TAATATATTT
24880105 TAACTATAATT-
1 TAAC-ATAATTA
24880116 TAACATAATTA
1 TAACATAATTA
24880127 TAACATAATTA
1 TAACATAATTA
24880138 TAACATAATTA
1 TAACATAATTA
24880149 TAACATA
1 TAACATA
24880156 TAATTTAATA
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.15
11 33 0.85
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (11 bp):
TAACATAATTA
Found at i:24880170 original size:22 final size:22
Alignment explanation
Indices: 24880105--24880163 Score: 93
Period size: 22 Copynumber: 2.6 Consensus size: 22
24880095 TAATATATTT
24880105 TAACTATAATTTAACATAATTA
1 TAACTATAATTTAACATAATTA
24880127 TAAC-ATAATTATAACATAATTA
1 TAACTATAATT-TAACATAATTA
24880149 TAACATATAATTTAA
1 TAAC-TATAATTTAA
24880164 TAAATTAACA
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
21 6 0.18
22 19 0.56
23 3 0.09
24 6 0.18
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (22 bp):
TAACTATAATTTAACATAATTA
Found at i:24882386 original size:25 final size:25
Alignment explanation
Indices: 24882356--24882408 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
24882346 GGCCAAAAAG
24882356 TTAGTGGCTTTCTAAGTTGAGGCAT
1 TTAGTGGCTTTCTAAGTTGAGGCAT
24882381 TTAGTGGCTTTCTAAGTTGAGGCAT
1 TTAGTGGCTTTCTAAGTTGAGGCAT
24882406 TTA
1 TTA
24882409 AGTTGCAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.21, C:0.11, G:0.26, T:0.42
Consensus pattern (25 bp):
TTAGTGGCTTTCTAAGTTGAGGCAT
Found at i:24895842 original size:42 final size:42
Alignment explanation
Indices: 24895740--24895848 Score: 121
Period size: 42 Copynumber: 2.6 Consensus size: 42
24895730 TTGTTTCAAT
* *
24895740 GCCATATCCCCGATATGGTCTTACATGAAATATCATATCGAC
1 GCCATATCCCCGATATGGTCTTATATGAAATATCATACCGAC
* * * * * *
24895782 ACCATGTCCCTGACATGGTCTTATATTAAATCA-CATACCGAG
1 GCCATATCCCCGATATGGTCTTATATGAAAT-ATCATACCGAC
*
24895824 GCCATATCCCGGATATGGTCTTATA
1 GCCATATCCCCGATATGGTCTTATA
24895849 CGGAATCTTA
Statistics
Matches: 54, Mismatches: 12, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
42 53 0.98
43 1 0.02
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (42 bp):
GCCATATCCCCGATATGGTCTTATATGAAATATCATACCGAC
Found at i:24900069 original size:26 final size:25
Alignment explanation
Indices: 24900017--24900073 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
24900007 CTATTCTTGC
*
24900017 AATTTTACCAGGGAAAAATTATGAA
1 AATTTTACCAGGGAAAAATCATGAA
* * *
24900042 AATTTTACCATGGGTAAAATCGTTAA
1 AATTTTACCA-GGGAAAAATCATGAA
24900068 AATTTT
1 AATTTT
24900074 GCTGGAGGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
25 10 0.37
26 17 0.63
ACGTcount: A:0.42, C:0.09, G:0.14, T:0.35
Consensus pattern (25 bp):
AATTTTACCAGGGAAAAATCATGAA
Found at i:24901751 original size:82 final size:82
Alignment explanation
Indices: 24901592--24901752 Score: 268
Period size: 82 Copynumber: 2.0 Consensus size: 82
24901582 AGATTTATAC
* *
24901592 AATGAAGTATTGGAGTAGTCCGAGGATTGTTCCTAAGGGAGATGAAACTAAACTAATTCTAACTT
1 AATGAAGTATTGGAGTAGTCCGAGGATTGTTCCCAAGGGAGACGAAACTAAACTAATTCTAACTT
* *
24901657 CGACGTTAATAGATCTA
66 CAACATTAATAGATCTA
*
24901674 AATGAAGTATTGGAGTAGTTCGAGGATTGTTCCCAAGGGAGACGAAACTAAACTAATTCTAACTT
1 AATGAAGTATTGGAGTAGTCCGAGGATTGTTCCCAAGGGAGACGAAACTAAACTAATTCTAACTT
*
24901739 CAACATTTATAGAT
66 CAACATTAATAGAT
24901753 ATAATTAGTA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
82 73 1.00
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (82 bp):
AATGAAGTATTGGAGTAGTCCGAGGATTGTTCCCAAGGGAGACGAAACTAAACTAATTCTAACTT
CAACATTAATAGATCTA
Found at i:24906227 original size:36 final size:36
Alignment explanation
Indices: 24906177--24906249 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 36
24906167 GTGGAAACAC
*
24906177 ATAAAGCTAAAATTGTAGGGAAAAAATATATACAGA
1 ATAAAGCTAAAATTGTAGGGAAAAAATATACACAGA
* * *
24906213 ATAAAGCTAGAATTGTAGGGAAAGACTATACACAGA
1 ATAAAGCTAAAATTGTAGGGAAAAAATATACACAGA
24906249 A
1 A
24906250 AGAAGGCATC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.52, C:0.08, G:0.19, T:0.21
Consensus pattern (36 bp):
ATAAAGCTAAAATTGTAGGGAAAAAATATACACAGA
Found at i:24909694 original size:44 final size:43
Alignment explanation
Indices: 24909570--24909710 Score: 144
Period size: 42 Copynumber: 3.3 Consensus size: 43
24909560 GCCTCACACG
* * *
24909570 TGGTCTTACATGT-AATCAAATATCGATGCCATTGTCCCAGACA
1 TGGTCTTACACGTAAATCATA-ATCGATGCCAATGTCCCAGACA
* * * *
24909613 GGGTCTTACACG-AACTCAT-ATACGATGCCGATGTCCCAAACA
1 TGGTCTTACACGTAAATCATAAT-CGATGCCAATGTCCCAGACA
** *
24909655 TGGTCTTACACGTAAATCATAAGTCGATGCCAACATCCCAGACG
1 TGGTCTTACACGTAAATCATAA-TCGATGCCAATGTCCCAGACA
24909699 TGGTCTTACACG
1 TGGTCTTACACG
24909711 AAAACACATA
Statistics
Matches: 79, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
41 2 0.03
42 28 0.35
43 20 0.25
44 28 0.35
45 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (43 bp):
TGGTCTTACACGTAAATCATAATCGATGCCAATGTCCCAGACA
Found at i:24920698 original size:40 final size:40
Alignment explanation
Indices: 24920614--24920838 Score: 246
Period size: 40 Copynumber: 5.7 Consensus size: 40
24920604 TTGAATGATG
* * *
24920614 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
24920653 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
24920694 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
24920733 TCCGGGTTAAGTGCCGAAGGCATTTGTGCGAGTTACTAAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
* *
24920774 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-TTAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
24920812 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
24920839 AACGAGGAGC
Statistics
Matches: 159, Mismatches: 18, Indels: 16
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 35 0.22
40 109 0.69
41 13 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:24927253 original size:40 final size:40
Alignment explanation
Indices: 24927197--24927343 Score: 240
Period size: 40 Copynumber: 3.7 Consensus size: 40
24927187 TAATTTTGGT
* * * *
24927197 TTAATAATTGAGTTGCTAGACTTTATTAAACTCATCTTAT
1 TTAATTATTGATTTGCTGGACTTTATTAAACTCATCTTAG
24927237 TTAATTATTGATTTGCTGGACTTTATTAAACTCATCTTAG
1 TTAATTATTGATTTGCTGGACTTTATTAAACTCATCTTAG
*
24927277 TTAATTATTGATGTGCTGGACTTTATTAAACTCATCTTAG
1 TTAATTATTGATTTGCTGGACTTTATTAAACTCATCTTAG
*
24927317 TTAGTTATTGATTTGCTGGACTTTATT
1 TTAATTATTGATTTGCTGGACTTTATT
24927344 TTTATTACAT
Statistics
Matches: 100, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 100 1.00
ACGTcount: A:0.27, C:0.12, G:0.14, T:0.48
Consensus pattern (40 bp):
TTAATTATTGATTTGCTGGACTTTATTAAACTCATCTTAG
Found at i:24929735 original size:12 final size:12
Alignment explanation
Indices: 24929718--24929742 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
24929708 AGAGATTGAG
24929718 AGTGAAAAAGAA
1 AGTGAAAAAGAA
24929730 AGTGAAAAAGAA
1 AGTGAAAAAGAA
24929742 A
1 A
24929743 AAGATAGTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.24, T:0.08
Consensus pattern (12 bp):
AGTGAAAAAGAA
Found at i:24929742 original size:18 final size:20
Alignment explanation
Indices: 24929720--24929767 Score: 64
Period size: 18 Copynumber: 2.5 Consensus size: 20
24929710 AGATTGAGAG
24929720 TGAAAAAGAAAGTGA-AAAA
1 TGAAAAAGAAAGTGAGAAAA
*
24929739 -GAAAAAGATAGTGAGAAAA
1 TGAAAAAGAAAGTGAGAAAA
24929758 TGCAAAAAGA
1 TG-AAAAAGA
24929768 GATAAAGAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 13 0.52
19 4 0.16
20 1 0.04
21 7 0.28
ACGTcount: A:0.65, C:0.02, G:0.23, T:0.10
Consensus pattern (20 bp):
TGAAAAAGAAAGTGAGAAAA
Found at i:24931364 original size:24 final size:24
Alignment explanation
Indices: 24931332--24931379 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
24931322 TATTACACTC
24931332 CTTTTAGTTAATTAGTTGCTGGAA
1 CTTTTAGTTAATTAGTTGCTGGAA
24931356 CTTTTAGTTAATTAGTTGCTGGAA
1 CTTTTAGTTAATTAGTTGCTGGAA
24931380 TAAATGTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.08, G:0.21, T:0.46
Consensus pattern (24 bp):
CTTTTAGTTAATTAGTTGCTGGAA
Found at i:24941145 original size:58 final size:60
Alignment explanation
Indices: 24941019--24941153 Score: 170
Period size: 58 Copynumber: 2.3 Consensus size: 60
24941009 TGATTATCTT
* * * * *
24941019 AATATTAAATTTAATTTAATATTTATATTGTAGACAATTATTCTATTAATTTAATAGATTT
1 AATATTAAATTTAATCTAATATTTATACTGTAGACAAATATTATATTAATTTAATA-ATTA
24941080 AATATTAAATTTAATCTAATATTTAT-CT-T-GACAAATATTATATTAATTTAAT-ATTA
1 AATATTAAATTTAATCTAATATTTATACTGTAGACAAATATTATATTAATTTAATAATTA
24941136 AAGTGATTAAATTTAATC
1 AA-T-ATTAAATTTAATC
24941154 ATAGTTGAAA
Statistics
Matches: 67, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
56 5 0.07
57 1 0.01
58 34 0.51
59 1 0.01
60 1 0.01
61 25 0.37
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.48
Consensus pattern (60 bp):
AATATTAAATTTAATCTAATATTTATACTGTAGACAAATATTATATTAATTTAATAATTA
Found at i:24955022 original size:37 final size:37
Alignment explanation
Indices: 24954972--24955050 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
24954962 TTATTACGAA
* * *
24954972 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
24955009 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
24955046 GTCTT
1 GTCTT
24955051 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:24955373 original size:47 final size:47
Alignment explanation
Indices: 24955223--24955443 Score: 327
Period size: 47 Copynumber: 4.7 Consensus size: 47
24955213 CCCTTCGGGA
* * * * * * *
24955223 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24955270 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24955316 CTTATCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24955363 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24955410 CTTATCACATATATACACTTTCACATTCATCACA
1 CTTATCACATATATACACTTTCACATTCATCACA
24955444 AACATATATA
Statistics
Matches: 157, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
46 40 0.25
47 117 0.75
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24955382 original size:93 final size:94
Alignment explanation
Indices: 24955223--24955442 Score: 343
Period size: 93 Copynumber: 2.4 Consensus size: 94
24955213 CCCTTCGGGA
* * * * * *
24955223 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACGTCGGCCACTAGGCCCTATCACATATATACAC
24955288 TTTCACATTCA-CACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
24955316 CTTATCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATTACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACGTCGGCCACTAGGCCCTATCACATATATACAC
*
24955381 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
24955410 CTTATCACATATATACACTTTCACATTCATCAC
1 CTTATCACATATATACACTTTCACATTCATCAC
24955443 AAACATATAT
Statistics
Matches: 116, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
93 67 0.58
94 49 0.42
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACGTCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:24955453 original size:76 final size:76
Alignment explanation
Indices: 24955369--24955519 Score: 302
Period size: 76 Copynumber: 2.0 Consensus size: 76
24955359 AGGCCTTATT
24955369 ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC
1 ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC
24955434 ATTCATCACAA
66 ATTCATCACAA
24955445 ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC
1 ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC
24955510 ATTCATCACA
66 ATTCATCACA
24955520 TCGGCCATTT
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 75 1.00
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.33
Consensus pattern (76 bp):
ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC
ATTCATCACAA
Found at i:24955458 original size:29 final size:29
Alignment explanation
Indices: 24955416--24955472 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
24955406 AGGCCTTATC
24955416 ACATATATACACTTTCACATTCATCACAA
1 ACATATATACACTTTCACATTCATCACAA
24955445 ACATATATACACTTTCACATTCATCACA
1 ACATATATACACTTTCACATTCATCACA
24955473 TCGGCTATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.40, C:0.28, G:0.00, T:0.32
Consensus pattern (29 bp):
ACATATATACACTTTCACATTCATCACAA
Found at i:24955460 original size:123 final size:125
Alignment explanation
Indices: 24955322--24955706 Score: 549
Period size: 123 Copynumber: 3.0 Consensus size: 125
24955312 AGGCCTTATC
* *
24955322 ACATATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATTACATATATACACTTTCAC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCAC
24955387 ATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA-A-
66 ATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACACAT
*
24955445 ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCAC
* * *
24955510 ATTCATCACATCGGCCATTTGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCAT
66 ATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCAT--CA-----CA-
24955575 TGGCCTTAT
123 ----C--AT
* *
24955584 CACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCA
1 -ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
24955649 CATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
65 CATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
24955707 TCGGCCATTA
Statistics
Matches: 233, Mismatches: 12, Indels: 24
0.87 0.04 0.09
Matches are distributed among these distances:
123 112 0.48
125 2 0.01
130 2 0.01
133 2 0.01
138 3 0.01
140 112 0.48
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (125 bp):
ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCAC
ATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACACAT
Found at i:24955502 original size:47 final size:47
Alignment explanation
Indices: 24955449--24955723 Score: 498
Period size: 47 Copynumber: 5.9 Consensus size: 47
24955439 TCACAAACAT
* *
24955449 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAT
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
*
24955496 ATATACACTTTCACATTCATCACATCGGCCATTTGGCCTTATCACAC
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
24955543 ATATACACTTTCACATTCATCACATCGGCCATT-GGCCTTATCACAC
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
24955589 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
* *
24955636 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAT
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
24955683 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
24955724 CTATCATTTC
Statistics
Matches: 221, Mismatches: 6, Indels: 2
0.97 0.03 0.01
Matches are distributed among these distances:
46 46 0.21
47 175 0.79
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
Found at i:24955605 original size:140 final size:141
Alignment explanation
Indices: 24955449--24955723 Score: 498
Period size: 140 Copynumber: 2.0 Consensus size: 141
24955439 TCACAAACAT
* *
24955449 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTC
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTC
*
24955514 ATCACATCGGCCATTTGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATT-GG
66 ATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGG
24955578 CCTTATCACAC
131 CCTTATCACAC
24955589 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTC
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTC
* *
24955654 ATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
66 ATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGG
24955719 CCTTA
131 CCTTA
24955724 CTATCATTTC
Statistics
Matches: 129, Mismatches: 5, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
140 122 0.95
141 7 0.05
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (141 bp):
ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTC
ATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGG
CCTTATCACAC
Found at i:24955690 original size:263 final size:263
Alignment explanation
Indices: 24955223--24955706 Score: 826
Period size: 263 Copynumber: 1.8 Consensus size: 263
24955213 CCCTTCGGGA
* * * * * *
24955223 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTCGGCCCTATCACACATATACAC
* *
24955288 TTTCACATTCACACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACGTCG
66 TTTCACATTCACACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCG
* *
24955353 GCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC
131 GCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC
24955418 ATATATACACTTTCACATTCATCACAAACATATATACACTTTCACATTCATCACATCGGCTATTA
196 ATATATACACTTTCACATTCATCACAAACATATATACACTTTCACATTCATCACATCGGCTATTA
24955483 GGC
261 GGC
* * * *
24955486 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTTGGCCTTATCACACATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTCGGCCCTATCACACATATACAC
24955551 TTTCACATTCATCACATCGGCCATT-GGCCTTATCACACATATACACTTTCACATTCATCACATC
66 TTTCACATTCA-CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
24955615 GGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCA
130 GGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCA
24955680 CATATATACACTTTCACATTCATCACA
195 CATATATACACTTTCACATTCATCACA
24955707 TCGGCCATTA
Statistics
Matches: 206, Mismatches: 14, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
263 193 0.94
264 13 0.06
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (263 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTCGGCCCTATCACACATATACAC
TTTCACATTCACACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCG
GCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC
ATATATACACTTTCACATTCATCACAAACATATATACACTTTCACATTCATCACATCGGCTATTA
GGC
Found at i:24958747 original size:25 final size:25
Alignment explanation
Indices: 24958719--24958770 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
24958709 AAGGAATTCG
24958719 CACACACACAGTGCCTCTAATT-ATT
1 CACACACACAGTG-CTCTAATTCATT
* * *
24958744 CACATACATAGTGCTCTTATTCATT
1 CACACACACAGTGCTCTAATTCATT
24958769 CA
1 CA
24958771 TTAATACACA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 7 0.30
25 16 0.70
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.33
Consensus pattern (25 bp):
CACACACACAGTGCTCTAATTCATT
Found at i:24959003 original size:40 final size:40
Alignment explanation
Indices: 24958946--24959128 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 40
24958936 CCAGCATGAT
* *
24958946 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
24958986 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
24959026 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAA
* *
24959067 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
24959107 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
24959129 CATCATTCGA
Statistics
Matches: 119, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 3 0.03
40 96 0.81
41 20 0.17
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:24959472 original size:29 final size:29
Alignment explanation
Indices: 24959438--24959540 Score: 154
Period size: 29 Copynumber: 3.6 Consensus size: 29
24959428 TAATCAACCA
* * *
24959438 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTTAGTGCCATGCA-TTTCAAGCC
*
24959467 CGCACAATTAGTGCCATGCATTTCAAGCC
1 CGCACACTTAGTGCCATGCATTTCAAGCC
24959496 CGCACACTTAGTGCCATGCATTTCAAGCC
1 CGCACACTTAGTGCCATGCATTTCAAGCC
24959525 CGCACACTTAGTGCCA
1 CGCACACTTAGTGCCA
24959541 ATCTCACAAC
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
28 3 0.04
29 65 0.96
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.25
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCATTTCAAGCC
Found at i:24959583 original size:43 final size:43
Alignment explanation
Indices: 24959522--24959624 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
24959512 TGCATTTCAA
24959522 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
24959565 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
24959608 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
24959625 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:24961549 original size:36 final size:37
Alignment explanation
Indices: 24961477--24961554 Score: 113
Period size: 36 Copynumber: 2.1 Consensus size: 37
24961467 TTATTACGAA
* * *
24961477 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACATAAACCCCACACGAAGTCATCGG
*
24961514 GTCTTACCCGGACA-AAACCCCACACGTAGTCATCGG
1 GTCTTACCCGGACATAAACCCCACACGAAGTCATCGG
24961550 GTCTT
1 GTCTT
24961555 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
36 23 0.62
37 14 0.38
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACATAAACCCCACACGAAGTCATCGG
Found at i:24961751 original size:47 final size:47
Alignment explanation
Indices: 24961673--24962191 Score: 889
Period size: 47 Copynumber: 11.1 Consensus size: 47
24961663 CCCTTCGGGA
* * * * * * *
24961673 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24961720 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24961767 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24961814 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24961861 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24961908 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24961955 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24962002 CTTATCAC--ATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24962047 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24962094 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24962141 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24962188 CTTA
1 CTTA
24962192 CTATCATTTC
Statistics
Matches: 452, Mismatches: 18, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
45 45 0.10
47 407 0.90
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24962011 original size:22 final size:22
Alignment explanation
Indices: 24961983--24962055 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
24961973 TTTCACATTC
24961983 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
*** * *
24962005 ATCACATATACACTTTCA--CATT
1 ATCACATCGGC-CATT-AGGCCTT
24962027 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
24962050 ATCACA
1 ATCACA
24962056 CATATACACT
Statistics
Matches: 36, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
21 1 0.03
22 20 0.56
23 14 0.39
24 1 0.03
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.29
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:24964856 original size:37 final size:37
Alignment explanation
Indices: 24964806--24964884 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
24964796 TTATTACGAA
* * *
24964806 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
24964843 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
24964880 GTCTT
1 GTCTT
24964885 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:24965170 original size:47 final size:47
Alignment explanation
Indices: 24965020--24965240 Score: 336
Period size: 47 Copynumber: 4.7 Consensus size: 47
24965010 CCCTTCGGGA
* * * * * * *
24965020 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24965067 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24965113 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24965160 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24965207 CTTATCACATATATACACTTTCACATTCATCACA
1 CTTATCACATATATACACTTTCACATTCATCACA
24965241 AACATATATA
Statistics
Matches: 159, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
46 40 0.25
47 119 0.75
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24965179 original size:93 final size:94
Alignment explanation
Indices: 24965020--24965240 Score: 336
Period size: 93 Copynumber: 2.4 Consensus size: 94
24965010 CCCTTCGGGA
* * * * * * *
24965020 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
24965085 TTTCACATTCA-CACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * *
24965113 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
*
24965178 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
24965207 CTTATCACATATATACACTTTCACATTCATCACA
1 CTTATCACATATATACACTTTCACATTCATCACA
24965241 AACATATATA
Statistics
Matches: 116, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
93 66 0.57
94 50 0.43
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:24965250 original size:76 final size:76
Alignment explanation
Indices: 24965166--24965316 Score: 302
Period size: 76 Copynumber: 2.0 Consensus size: 76
24965156 AGGCCTTATT
24965166 ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC
1 ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC
24965231 ATTCATCACAA
66 ATTCATCACAA
24965242 ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC
1 ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC
24965307 ATTCATCACA
66 ATTCATCACA
24965317 TCGGCCATTT
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 75 1.00
ACGTcount: A:0.34, C:0.28, G:0.05, T:0.33
Consensus pattern (76 bp):
ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC
ATTCATCACAA
Found at i:24965255 original size:29 final size:29
Alignment explanation
Indices: 24965213--24965269 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
24965203 AGGCCTTATC
24965213 ACATATATACACTTTCACATTCATCACAA
1 ACATATATACACTTTCACATTCATCACAA
24965242 ACATATATACACTTTCACATTCATCACA
1 ACATATATACACTTTCACATTCATCACA
24965270 TCGGCTATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.40, C:0.28, G:0.00, T:0.32
Consensus pattern (29 bp):
ACATATATACACTTTCACATTCATCACAA
Found at i:24965259 original size:123 final size:124
Alignment explanation
Indices: 24965119--24965503 Score: 540
Period size: 123 Copynumber: 3.0 Consensus size: 124
24965109 AGGCCTTATC
*
24965119 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACACTTTCAC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCAC
24965184 ATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA-A-
66 ATTCATCACATCGGC-ATTAGGCCTTATCACATATATACACTTTCACATTCATCACACAT
*
24965242 ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC
1 ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCAC
* *
24965307 ATTCATCACATCGGCCATTTGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCAT
66 ATTCATCACATCGG-CATTAGGCCTTATCACATATATACACTTTCACATTCAT--CA-----CA-
24965372 TTGGCCTTAT
122 -----C--AT
* *
24965382 CACACATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCA
1 -ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCA
24965447 CATTCATCACATCGGCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
65 CATTCATCACATCGGCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
24965504 TCGGCCATTA
Statistics
Matches: 234, Mismatches: 9, Indels: 28
0.86 0.03 0.10
Matches are distributed among these distances:
123 112 0.48
124 1 0.00
125 2 0.01
130 2 0.01
133 2 0.01
138 2 0.01
139 1 0.00
140 36 0.15
141 76 0.32
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.32
Consensus pattern (124 bp):
ACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCAC
ATTCATCACATCGGCATTAGGCCTTATCACATATATACACTTTCACATTCATCACACAT
Found at i:24965299 original size:47 final size:47
Alignment explanation
Indices: 24965246--24965520 Score: 498
Period size: 47 Copynumber: 5.9 Consensus size: 47
24965236 TCACAAACAT
* *
24965246 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAT
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
*
24965293 ATATACACTTTCACATTCATCACATCGGCCATTTGGCCTTATCACAC
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
*
24965340 ATATACACTTTCACATTCATCACATCGGCCATTTGGCCTTATCACAC
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
24965387 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
*
24965434 ATATACACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACAT
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
24965480 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
24965521 CTATCATTTC
Statistics
Matches: 222, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
46 45 0.20
47 177 0.80
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
Found at i:24965354 original size:170 final size:171
Alignment explanation
Indices: 24965073--24965520 Score: 659
Period size: 170 Copynumber: 2.5 Consensus size: 171
24965063 CGGCCCTGTC
24965073 ACATATATACACTTTCACATTCA-CACATCGGCCATTAGGCCTTATCACATATATACACTTTCAC
1 ACATATATACACTTTCACATTCATCACATCGG-CATTAGGCCTTATCACATATATACACTTTCAC
* * *
24965137 ATTCATCACATCGGCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCTAT
65 ATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCAT
*
24965202 TAGGCCTTATCACATATATACACTTTCACATTCATCACA-A-
130 TAGGCCTTATCACACATATACACTTTCACATTCATCACACAT
24965242 ACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCAC
1 ACATATATACACTTTCACATTCATCACATCGGC-ATTAGGCCTTATCACATATATACACTTTCAC
*
24965307 ATTCATCACATCGGCCATTTGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCAT
65 ATTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCAT
*
24965372 TTGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATT
130 TAGGCCTTATCACACATATACACTTTCACATTCATCACA-----CA-T
24965420 AGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACATATATA
1 A---C--AT-----ATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACATATATA
24965485 CACTTTCACATTCATCACATCGGCCATTAGGCCTTA
56 CACTTTCACATTCATCACATCGGCCATTAGGCCTTA
24965521 CTATCATTTC
Statistics
Matches: 252, Mismatches: 7, Indels: 22
0.90 0.02 0.08
Matches are distributed among these distances:
169 24 0.10
170 137 0.54
176 1 0.00
178 1 0.00
181 1 0.00
183 2 0.01
187 57 0.23
188 29 0.12
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (171 bp):
ACATATATACACTTTCACATTCATCACATCGGCATTAGGCCTTATCACATATATACACTTTCACA
TTCATCACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCCATT
AGGCCTTATCACACATATACACTTTCACATTCATCACACAT
Found at i:24967691 original size:48 final size:48
Alignment explanation
Indices: 24967623--24967772 Score: 232
Period size: 48 Copynumber: 3.1 Consensus size: 48
24967613 GGCTGTCACA
* *
24967623 AATGTAACTCGCACCCGAAGTGCCGATATCATGGCCTGAAGCCAAATC
1 AATGTAACTCGCACCTGAAGTGCCGATATCATGGCCCGAAGCCAAATC
* *
24967671 AATGTAACTCACACCTGAAGTGCCGATATCATGTCCCGAAGCCAAATC
1 AATGTAACTCGCACCTGAAGTGCCGATATCATGGCCCGAAGCCAAATC
24967719 AATG-AAGCTCGCA-CTCGAAGTGCCGATATCATGGCCCGAAGCCAAATC
1 AATGTAA-CTCGCACCT-GAAGTGCCGATATCATGGCCCGAAGCCAAATC
24967767 AATGTA
1 AATGTA
24967773 TTCCCTAATG
Statistics
Matches: 93, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
47 4 0.04
48 88 0.95
49 1 0.01
ACGTcount: A:0.33, C:0.28, G:0.20, T:0.19
Consensus pattern (48 bp):
AATGTAACTCGCACCTGAAGTGCCGATATCATGGCCCGAAGCCAAATC
Found at i:24989016 original size:30 final size:30
Alignment explanation
Indices: 24988978--24989041 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
24988968 TATTATATTA
24988978 CTTA-AATGTTAAATGTATGGTAAGATTTT
1 CTTATAATGTTAAATGTATGGTAAGATTTT
24989007 CTTATAATGTTAAATGTATGGTAAGATTTT
1 CTTATAATGTTAAATGTATGGTAAGATTTT
24989037 CTTAT
1 CTTAT
24989042 TTCTTTCATA
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 4 0.12
30 30 0.88
ACGTcount: A:0.33, C:0.05, G:0.16, T:0.47
Consensus pattern (30 bp):
CTTATAATGTTAAATGTATGGTAAGATTTT
Found at i:24993205 original size:42 final size:42
Alignment explanation
Indices: 24993087--24993198 Score: 125
Period size: 42 Copynumber: 2.7 Consensus size: 42
24993077 AGTCATCATG
* * * * * *
24993087 TAAGACCATATTTGGGATAAGGCGTTGATATGACATTTCGTG
1 TAAGACCATATTTGGGATATGGCGTCGAAATGAGAATTCGTA
* * *
24993129 TAAGACCATGTTTAGGACATGGCGTCGAAATGAGAATTCGTA
1 TAAGACCATATTTGGGATATGGCGTCGAAATGAGAATTCGTA
* *
24993171 TAAGACCATATCTGGGATATGGCATCGA
1 TAAGACCATATTTGGGATATGGCGTCGA
24993199 CGTGAGATCC
Statistics
Matches: 56, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 56 1.00
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (42 bp):
TAAGACCATATTTGGGATATGGCGTCGAAATGAGAATTCGTA
Found at i:25000061 original size:26 final size:26
Alignment explanation
Indices: 25000032--25000091 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 26
25000022 TCCCTTTGAA
* * *
25000032 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
25000058 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
25000086 TCATTC
1 TCATTC
25000092 TCAATATTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 5 0.17
27 2 0.07
28 22 0.76
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.37
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:25000077 original size:28 final size:28
Alignment explanation
Indices: 25000046--25000108 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
25000036 TCGATATTTT
25000046 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGTCATTCTCAATATCTC
*
25000074 GCACACTAAGTGTCATTCTCAATATTTC
1 GCACACTAAGTGTCATTCTCAATATCTC
*
25000102 GTACACT
1 GCACACT
25000109 GAGTACCATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.29, C:0.27, G:0.11, T:0.33
Consensus pattern (28 bp):
GCACACTAAGTGTCATTCTCAATATCTC
Found at i:25010225 original size:29 final size:29
Alignment explanation
Indices: 25010185--25010243 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
25010175 TCTTGGAAGA
* * *
25010185 GGTGGAGAACTTGTTTGTTGAGAGTTCGT
1 GGTGAAGAACTTGTTCGTTGAGAATTCGT
25010214 GGTGAAGAACTTGTTCGTTGAGAATTCGT
1 GGTGAAGAACTTGTTCGTTGAGAATTCGT
25010243 G
1 G
25010244 TCAAAGCAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.20, C:0.08, G:0.36, T:0.36
Consensus pattern (29 bp):
GGTGAAGAACTTGTTCGTTGAGAATTCGT
Found at i:25010364 original size:24 final size:24
Alignment explanation
Indices: 25010335--25010398 Score: 92
Period size: 24 Copynumber: 2.7 Consensus size: 24
25010325 TTTCTAGAAG
* *
25010335 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGCATAATAT
25010359 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATTAGCATAATAT
* *
25010383 ATTTAACATTGATTAG
1 ATTTAGCATTTATTAG
25010399 AATTAGGTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.38, C:0.05, G:0.09, T:0.48
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATAATAT
Found at i:25024525 original size:6 final size:6
Alignment explanation
Indices: 25024498--25024548 Score: 52
Period size: 6 Copynumber: 8.8 Consensus size: 6
25024488 TGTACCCTTT
* * * *
25024498 TTTTTG TTTTTG TTTTTG TTTTCC TTTTTC --TTTC TTTTTC TTTTTC
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC
25024544 TTTTT
1 TTTTT
25024549 TCTGGGCCTG
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
4 4 0.10
6 36 0.90
ACGTcount: A:0.00, C:0.12, G:0.06, T:0.82
Consensus pattern (6 bp):
TTTTTC
Found at i:25024525 original size:12 final size:12
Alignment explanation
Indices: 25024498--25024548 Score: 52
Period size: 11 Copynumber: 4.4 Consensus size: 12
25024488 TGTACCCTTT
*
25024498 TTTTTGTTTTTG
1 TTTTTGTTTTTC
25024510 TTTTTG-TTTTC
1 TTTTTGTTTTTC
* *
25024521 CTTTT-TCTTTC
1 TTTTTGTTTTTC
*
25024532 TTTTTCTTTTTC
1 TTTTTGTTTTTC
25024544 TTTTT
1 TTTTT
25024549 TCTGGGCCTG
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
11 16 0.50
12 16 0.50
ACGTcount: A:0.00, C:0.12, G:0.06, T:0.82
Consensus pattern (12 bp):
TTTTTGTTTTTC
Found at i:25024536 original size:28 final size:27
Alignment explanation
Indices: 25024493--25024547 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
25024483 CCTCTTGTAC
* * *
25024493 CCTTTTTTTTGTTTTTGTTTTTGTTTT
1 CCTTTTTTTTCTTTTTCTTTTTCTTTT
25024520 CCTTTTTCTTTCTTTTTCTTTTTCTTTT
1 CCTTTTT-TTTCTTTTTCTTTTTCTTTT
25024548 TTCTGGGCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 7 0.29
28 17 0.71
ACGTcount: A:0.00, C:0.15, G:0.05, T:0.80
Consensus pattern (27 bp):
CCTTTTTTTTCTTTTTCTTTTTCTTTT
Found at i:25024540 original size:16 final size:15
Alignment explanation
Indices: 25024494--25024549 Score: 58
Period size: 16 Copynumber: 3.5 Consensus size: 15
25024484 CTCTTGTACC
*
25024494 CTTTTTTTTGTTTTT
1 CTTTTTTTTCTTTTT
*
25024509 GTTTTTGTTTTCCTTTTT
1 -CTTTT-TTTT-CTTTTT
25024527 CTTTCTTTTTCTTTTT
1 CTTT-TTTTTCTTTTT
25024543 CTTTTTT
1 CTTTTTT
25024550 CTGGGCCTGC
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
15 3 0.09
16 14 0.41
17 11 0.32
18 6 0.18
ACGTcount: A:0.00, C:0.12, G:0.05, T:0.82
Consensus pattern (15 bp):
CTTTTTTTTCTTTTT
Found at i:25025748 original size:43 final size:44
Alignment explanation
Indices: 25025666--25025758 Score: 113
Period size: 43 Copynumber: 2.2 Consensus size: 44
25025656 CATGTTTAGC
** *
25025666 AGAGAAAAGGAAATTGGGATAAAGAAAGGTCACAGGGAAAAATA
1 AGAGAAAAGGAAATTGGGATAAAGAAACATCACAGGGAAAAACA
25025710 AGAGAAAAGGAAATT-GGA-AGAAGAAACATCACCA-GGAAAAACA
1 AGAGAAAAGGAAATTGGGATA-AAGAAACATCA-CAGGGAAAAACA
25025753 A-AGAAA
1 AGAGAAA
25025759 GAAAAAAAGA
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
42 6 0.14
43 21 0.48
44 17 0.39
ACGTcount: A:0.58, C:0.08, G:0.26, T:0.09
Consensus pattern (44 bp):
AGAGAAAAGGAAATTGGGATAAAGAAACATCACAGGGAAAAACA
Found at i:25029811 original size:17 final size:17
Alignment explanation
Indices: 25029789--25029822 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
25029779 CAAATATAAA
25029789 ACCTCTCATGTTATTTG
1 ACCTCTCATGTTATTTG
25029806 ACCTCTCATGTTATTTG
1 ACCTCTCATGTTATTTG
25029823 CTTGAACGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.18, C:0.24, G:0.12, T:0.47
Consensus pattern (17 bp):
ACCTCTCATGTTATTTG
Found at i:25032664 original size:8 final size:8
Alignment explanation
Indices: 25032618--25032665 Score: 62
Period size: 8 Copynumber: 5.9 Consensus size: 8
25032608 TTCTATCAAA
*
25032618 TAAATTAT
1 TAAAATAT
25032626 TAAAA-AT
1 TAAAATAT
25032633 TAAAAATATT
1 T-AAAATA-T
25032643 TAAAATAT
1 TAAAATAT
25032651 TAAAATAT
1 TAAAATAT
25032659 TAAAATA
1 TAAAATA
25032666 AATAGTTGGT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
7 3 0.08
8 24 0.67
9 7 0.19
10 2 0.06
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
TAAAATAT
Found at i:25044602 original size:26 final size:26
Alignment explanation
Indices: 25044569--25044687 Score: 125
Period size: 26 Copynumber: 4.6 Consensus size: 26
25044559 AAGGCCTTGG
25044569 GAGTTTGAGTTGGTCGGAGGACCTTT
1 GAGTTTGAGTTGGTCGGAGGACCTTT
* *
25044595 GAGTTTGAGTTGGTCAGAGGACCCTT
1 GAGTTTGAGTTGGTCGGAGGACCTTT
*
25044621 GAGTTTGAGTTGGTTGGAGGACAC-TT
1 GAGTTTGAGTTGGTCGGAGGAC-CTTT
* * * * *
25044647 GAGTTTTAGTGGGTTGGA-GAACTCTA
1 GAGTTTGAGTTGGTCGGAGGACCT-TT
*
25044673 GAGTTTAAGTTGGTC
1 GAGTTTGAGTTGGTC
25044688 AGATGGCCCT
Statistics
Matches: 79, Mismatches: 11, Indels: 6
0.82 0.11 0.06
Matches are distributed among these distances:
24 1 0.01
25 2 0.03
26 75 0.95
27 1 0.01
ACGTcount: A:0.19, C:0.10, G:0.36, T:0.34
Consensus pattern (26 bp):
GAGTTTGAGTTGGTCGGAGGACCTTT
Found at i:25044677 original size:52 final size:52
Alignment explanation
Indices: 25044569--25044687 Score: 141
Period size: 52 Copynumber: 2.3 Consensus size: 52
25044559 AAGGCCTTGG
* * *
25044569 GAGTTTGAGTTGGTCGGAGGACCTTTGAGTTTGAGTTGGTCAGAGGACCCTT
1 GAGTTTGAGTTGGTCGGAGGACCTTTGAGTTTGAGTGGGTCAGAGAACCCTA
* * ** *
25044621 GAGTTTGAGTTGGTTGGAGGACAC-TTGAGTTTTAGTGGGTTGGAGAACTCTA
1 GAGTTTGAGTTGGTCGGAGGAC-CTTTGAGTTTGAGTGGGTCAGAGAACCCTA
*
25044673 GAGTTTAAGTTGGTC
1 GAGTTTGAGTTGGTC
25044688 AGATGGCCCT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
52 55 0.98
53 1 0.02
ACGTcount: A:0.19, C:0.10, G:0.36, T:0.34
Consensus pattern (52 bp):
GAGTTTGAGTTGGTCGGAGGACCTTTGAGTTTGAGTGGGTCAGAGAACCCTA
Found at i:25046520 original size:24 final size:23
Alignment explanation
Indices: 25046475--25046527 Score: 61
Period size: 24 Copynumber: 2.3 Consensus size: 23
25046465 ACATGACAAC
25046475 TGATATATGAAAACATGAGATGA
1 TGATATATGAAAACATGAGATGA
** * *
25046498 TTGATATATGGTAATATGGGATGA
1 -TGATATATGAAAACATGAGATGA
25046522 TGATAT
1 TGATAT
25046528 TTGTACATGA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
23 6 0.24
24 19 0.76
ACGTcount: A:0.40, C:0.02, G:0.25, T:0.34
Consensus pattern (23 bp):
TGATATATGAAAACATGAGATGA
Found at i:25052862 original size:38 final size:38
Alignment explanation
Indices: 25052820--25052892 Score: 103
Period size: 38 Copynumber: 1.9 Consensus size: 38
25052810 AAAAATATAT
* *
25052820 TTTTAAACGGTTAC-GATTTGACAAAATTAGAATCTAGC
1 TTTTAAACGATTACAG-TTTGACAAAATCAGAATCTAGC
*
25052858 TTTTAAACTATTACAGTTTGACAAAATCAGAATCT
1 TTTTAAACGATTACAGTTTGACAAAATCAGAATCT
25052893 GGCGGTTGAG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
38 30 0.97
39 1 0.03
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.36
Consensus pattern (38 bp):
TTTTAAACGATTACAGTTTGACAAAATCAGAATCTAGC
Found at i:25053951 original size:15 final size:16
Alignment explanation
Indices: 25053931--25053963 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
25053921 ATATATATTT
25053931 TTATTTT-ATTTTTAA
1 TTATTTTAATTTTTAA
25053946 TTATTTTAAATTTTTAA
1 TTATTTT-AATTTTTAA
25053963 T
1 T
25053964 ATAACCATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (16 bp):
TTATTTTAATTTTTAA
Found at i:25054036 original size:21 final size:22
Alignment explanation
Indices: 25054010--25054068 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
25054000 GTTTTAAGAA
*
25054010 TTGTTTTAGTA-TTATTTTTAT
1 TTGTTTTAATATTTATTTTTAT
*
25054031 TTGTTTTAATATTTGTTTTTAT
1 TTGTTTTAATATTTATTTTTAT
* *
25054053 GT-TTTTAA-ATATATTT
1 TTGTTTTAATATTTATTT
25054069 GATTTATTGT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
20 6 0.19
21 16 0.50
22 10 0.31
ACGTcount: A:0.22, C:0.00, G:0.08, T:0.69
Consensus pattern (22 bp):
TTGTTTTAATATTTATTTTTAT
Found at i:25057885 original size:30 final size:30
Alignment explanation
Indices: 25057828--25057885 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
25057818 TTTTCAAGCT
* **
25057828 TAGGGGCAAAATGGTCATTTTGTCAAAGTC
1 TAGGGGCAAAATGGTCACTTTACCAAAGTC
25057858 TAGGGGCAAAATGGTCACTTTACCAAAG
1 TAGGGGCAAAATGGTCACTTTACCAAAG
25057886 ATATGAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.26
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCACTTTACCAAAGTC
Found at i:25058402 original size:46 final size:46
Alignment explanation
Indices: 25058218--25058438 Score: 193
Period size: 46 Copynumber: 4.8 Consensus size: 46
25058208 GGTCACTTGT
* * * * * *
25058218 GTGAGCTAGTGTAAGACATTTCTGGGACATGCATTGGCCA-TATTAT
1 GTGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GAC
* * *
25058264 GAGAGCAAGTGTAAGACCATGTCTGGGACATGGCATCGGC-ATTGAGAC
1 GTGAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGAC
* * **
25058312 GAGTGCTAGTGTAAGACATGTCTGGGACATGCATCAACCT-CGAGAC
1 GTGAGCTAGTGTAAGACATGTCTGGGACATGCATC-GGCTACGAGAC
*
25058358 GTGAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGA-
1 GTGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGAC
* *
25058403 -TGTGTTAGTGTAAGACCATGTCTGGGAC-TGACATCG
1 GTGAGCTAGTGTAAGA-CATGTCTGGGACATG-CATCG
25058439 ACACATATAT
Statistics
Matches: 146, Mismatches: 20, Indels: 19
0.79 0.11 0.10
Matches are distributed among these distances:
44 14 0.10
45 19 0.13
46 61 0.42
47 29 0.20
48 22 0.15
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (46 bp):
GTGAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGAC
Found at i:25061979 original size:47 final size:47
Alignment explanation
Indices: 25061910--25062035 Score: 207
Period size: 47 Copynumber: 2.7 Consensus size: 47
25061900 TTTTATGTGT
*
25061910 ATATATGCGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
* *
25061957 ATATATGTGTTCAGGCCGAATGGCCAATGTGATGAATATGAACATGC
1 ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
* *
25062004 ATATATGTGATAAGGCCGAATGACTAATGTGA
1 ATATATGTGATAAGGCCGAATGGCCAATGTGA
25062036 AATATGTATG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.26
Consensus pattern (47 bp):
ATATATGTGATAAGGCCGAATGGCCAATGTGATGAATATGAACATGC
Found at i:25062072 original size:48 final size:48
Alignment explanation
Indices: 25062005--25062142 Score: 204
Period size: 50 Copynumber: 2.8 Consensus size: 48
25061995 TGAACATGCA
* * *
25062005 TATATGTGATAAGGCCGAATGACTAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
*
25062053 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTG-AA-ATATGTATGAGATATG
* *
25062103 TAAATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTAT
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTAT
25062143 ATGTGGTAAA
Statistics
Matches: 81, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
48 34 0.42
49 4 0.05
50 43 0.53
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATG
Found at i:25062139 original size:37 final size:37
Alignment explanation
Indices: 25062098--25062178 Score: 153
Period size: 37 Copynumber: 2.2 Consensus size: 37
25062088 TATATATGAG
25062098 ATATGTAAATGTGGTAAAGCCGAATGGCTAGTGTGAA
1 ATATGTAAATGTGGTAAAGCCGAATGGCTAGTGTGAA
*
25062135 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAA
1 ATATGTAAATGTGGTAAAGCCGAATGGCTAGTGTGAA
25062172 ATATGTA
1 ATATGTA
25062179 GGCGATGTGC
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 43 1.00
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (37 bp):
ATATGTAAATGTGGTAAAGCCGAATGGCTAGTGTGAA
Found at i:25062374 original size:37 final size:37
Alignment explanation
Indices: 25062324--25062436 Score: 181
Period size: 37 Copynumber: 3.1 Consensus size: 37
25062314 GGAAATATAT
*
25062324 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
25062361 TCCGGGTAAGACCCGATGACTACGTGTGGAAATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
25062398 TCCGAGTAAGACCCGATAACTTCGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
25062435 TC
1 TC
25062437 TGAGCTAAAG
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 70 1.00
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:25073709 original size:21 final size:22
Alignment explanation
Indices: 25073683--25073729 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
25073673 CTCTGCTCAA
*
25073683 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
25073704 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
25073726 ACTC
1 ACTC
25073730 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:25085176 original size:49 final size:51
Alignment explanation
Indices: 25085122--25085222 Score: 152
Period size: 51 Copynumber: 2.0 Consensus size: 51
25085112 TTTAGTTATT
*
25085122 TTAGTTTAATTAATTAAG-T-TGTTTTAATTGTCTTTAGTTGTTTAAATAA
1 TTAGTTTAATTAATTAAGCTGTGTTTTAATTGTCTTTAGTTGCTTAAATAA
* * *
25085171 TTAGTTTAATTAATTAAGCTGTTTTTTAATTTTCTTTAGTTGCTTAAGTAA
1 TTAGTTTAATTAATTAAGCTGTGTTTTAATTGTCTTTAGTTGCTTAAATAA
25085222 T
1 T
25085223 GTCGGCAATT
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
49 18 0.39
50 1 0.02
51 27 0.59
ACGTcount: A:0.29, C:0.04, G:0.12, T:0.55
Consensus pattern (51 bp):
TTAGTTTAATTAATTAAGCTGTGTTTTAATTGTCTTTAGTTGCTTAAATAA
Found at i:25085233 original size:51 final size:49
Alignment explanation
Indices: 25085129--25085235 Score: 117
Period size: 51 Copynumber: 2.1 Consensus size: 49
25085119 ATTTTAGTTT
* **
25085129 AATTAATTAAGTTGTTTTAATTGTCTTTAGTTGTTTAAATAATTAGTTT
1 AATTAATTAAGTTGTTTTAATTGTCTTTAGTTGCTTAAATAATTAGTGC
* * * *
25085178 AATTAATTAAGCTGTTTTTTAATTTTCTTTAGTTGCTTAAGTAATGTCG-GC
1 AATTAATTAAG-T-TGTTTTAATTGTCTTTAGTTGCTTAAATAAT-TAGTGC
25085229 AATTAAT
1 AATTAAT
25085236 ATGTTCCAGC
Statistics
Matches: 48, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
49 11 0.23
50 1 0.02
51 34 0.71
52 2 0.04
ACGTcount: A:0.30, C:0.06, G:0.13, T:0.51
Consensus pattern (49 bp):
AATTAATTAAGTTGTTTTAATTGTCTTTAGTTGCTTAAATAATTAGTGC
Found at i:25085288 original size:17 final size:17
Alignment explanation
Indices: 25085266--25085298 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
25085256 TTGCTATAGC
25085266 CATTTAACTTGTTTAAA
1 CATTTAACTTGTTTAAA
25085283 CATTTAACTTGTTTAA
1 CATTTAACTTGTTTAA
25085299 TTGTGCTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.48
Consensus pattern (17 bp):
CATTTAACTTGTTTAAA
Found at i:25086951 original size:28 final size:28
Alignment explanation
Indices: 25086911--25086969 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
25086901 GGCAATGTTG
25086911 AATTAAGATCGAATGTGAAATCGAGCTA
1 AATTAAGATCGAATGTGAAATCGAGCTA
25086939 AATTAAGATCGAATGTGAAATCGAGCTA
1 AATTAAGATCGAATGTGAAATCGAGCTA
25086967 AAT
1 AAT
25086970 GGTTTAGGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.44, C:0.10, G:0.20, T:0.25
Consensus pattern (28 bp):
AATTAAGATCGAATGTGAAATCGAGCTA
Found at i:25088616 original size:29 final size:29
Alignment explanation
Indices: 25088583--25088641 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
25088573 GTTACATATG
25088583 TTAGAGTTTCTCAAAGGTCTTTTAGTTTT
1 TTAGAGTTTCTCAAAGGTCTTTTAGTTTT
25088612 TTAGAGTTTCTCAAAGGTCTTTTAGTTTT
1 TTAGAGTTTCTCAAAGGTCTTTTAGTTTT
25088641 T
1 T
25088642 AATTAGCTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.20, C:0.10, G:0.17, T:0.53
Consensus pattern (29 bp):
TTAGAGTTTCTCAAAGGTCTTTTAGTTTT
Found at i:25089384 original size:37 final size:37
Alignment explanation
Indices: 25089343--25089418 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
25089333 TTACAGAGTA
*
25089343 TATATGGCATGTATAGCTAGACTATCACACGCTATGT
1 TATATGGCATGTATAGCTAGACTATCACACGCTACGT
25089380 TATATGGCATGTATAGCTAGACTATCACACGCTACGT
1 TATATGGCATGTATAGCTAGACTATCACACGCTACGT
25089417 TA
1 TA
25089419 GTCCTAGAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (37 bp):
TATATGGCATGTATAGCTAGACTATCACACGCTACGT
Found at i:25089471 original size:57 final size:57
Alignment explanation
Indices: 25089380--25089493 Score: 219
Period size: 57 Copynumber: 2.0 Consensus size: 57
25089370 CACGCTATGT
25089380 TATATGGCATGTATAGCTAGACTATCACACGCTACGTTAGTCCTAGAATTGACTAAA
1 TATATGGCATGTATAGCTAGACTATCACACGCTACGTTAGTCCTAGAATTGACTAAA
*
25089437 TATATGGCATGTATAGCTAGACTATCACATGCTACGTTAGTCCTAGAATTGACTAAA
1 TATATGGCATGTATAGCTAGACTATCACACGCTACGTTAGTCCTAGAATTGACTAAA
25089494 CCGTAGCTCT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (57 bp):
TATATGGCATGTATAGCTAGACTATCACACGCTACGTTAGTCCTAGAATTGACTAAA
Found at i:25095848 original size:16 final size:17
Alignment explanation
Indices: 25095815--25095867 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 17
25095805 TTATCAGCTA
*
25095815 TTATTATT-TTATTATT
1 TTATTATTATAATTATT
25095831 TTATTATTATAATT-TT
1 TTATTATTATAATTATT
* *
25095847 TTATAATTATTAAGTATT
1 TTATTATTA-TAATTATT
25095865 TTA
1 TTA
25095868 AGTTATTTAG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
16 18 0.58
17 8 0.26
18 5 0.16
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (17 bp):
TTATTATTATAATTATT
Found at i:25110090 original size:206 final size:206
Alignment explanation
Indices: 25109736--25110117 Score: 647
Period size: 206 Copynumber: 1.9 Consensus size: 206
25109726 TACTGTTAGT
* * * **
25109736 CATAAAAATAGGAATTGATTTGTCTTTTTCCTAAGGCTATTAGTAGGCACATGGCAAACAATAAC
1 CATAAAAATAAGAACTGATTTGTCTCTTTCCTAAGGAAATTAGTAGGCACATGGCAAACAATAAC
*
25109801 TTTAGAAAAATCCAAACCTGCAATTCAATTTGATACAGACAATGATCATATTTGAATCAACATTT
66 TTTAGAAAAATCCAAACCTGCAATTCAATTTGATACAAACAATGATCATATTTGAATCAACATTT
*
25109866 AAAAAATATTTTGAATCATATTTGAATAATTCAATGACTTACACAGATTCAAATGATTTAATAAA
131 AAAAAATATTTTGAATCATATTTGAATAATTCAATGACATACACAGATTCAAATGATTTAATAAA
25109931 GATTGATAAGC
196 GATTGATAAGC
* * *
25109942 CATAAAAATAAGAACTGATTTGTCTCTTTCCTAAGGAAATTAGTATGCACATGGCAGACAATACC
1 CATAAAAATAAGAACTGATTTGTCTCTTTCCTAAGGAAATTAGTAGGCACATGGCAAACAATAAC
* *
25110007 TTTAGAAAAATCCAAACCTGCAATTCACTTTGATACAAACAATGATCATATTTGGATCAACATTT
66 TTTAGAAAAATCCAAACCTGCAATTCAATTTGATACAAACAATGATCATATTTGAATCAACATTT
*
25110072 AAAAAATGTTTTGAATCATATTTGAATAATTCAATGACATACACAG
131 AAAAAATATTTTGAATCATATTTGAATAATTCAATGACATACACAG
25110118 TTTTGAATAA
Statistics
Matches: 163, Mismatches: 13, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
206 163 1.00
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (206 bp):
CATAAAAATAAGAACTGATTTGTCTCTTTCCTAAGGAAATTAGTAGGCACATGGCAAACAATAAC
TTTAGAAAAATCCAAACCTGCAATTCAATTTGATACAAACAATGATCATATTTGAATCAACATTT
AAAAAATATTTTGAATCATATTTGAATAATTCAATGACATACACAGATTCAAATGATTTAATAAA
GATTGATAAGC
Found at i:25113860 original size:18 final size:18
Alignment explanation
Indices: 25113820--25113857 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
25113810 TAATTCATAA
*
25113820 TTATTATAAAATATTATT
1 TTATTATAAAATAATATT
25113838 TTATTATAAAATAAATATT
1 TTATTATAAAAT-AATATT
25113857 T
1 T
25113858 ATTTTCAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TTATTATAAAATAATATT
Found at i:25114954 original size:27 final size:26
Alignment explanation
Indices: 25114906--25114957 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
25114896 GCGAGGCTCC
25114906 CAGATATTGTGACGAAGACACCAGAA
1 CAGATATTGTGACGAAGACACCAGAA
* * *
25114932 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGACACCAGA
25114958 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.37, C:0.21, G:0.27, T:0.15
Consensus pattern (26 bp):
CAGATATTGTGACGAAGACACCAGAA
Found at i:25115802 original size:27 final size:27
Alignment explanation
Indices: 25115607--25115805 Score: 245
Period size: 27 Copynumber: 7.4 Consensus size: 27
25115597 GGGGCAAAAT
* * * *
25115607 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
25115634 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
* **
25115661 GTATTTCTACCCTACAAAGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
** *
25115688 GTAATTCTATGCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
*
25115715 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
* * * *
25115742 ATAATTCTACCTTACAGGGGTAGTTCA
1 GTAATTCTACCCTACAGGGGTATTTCG
* *
25115769 ATAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCG
25115796 GTAATTCTAC
1 GTAATTCTAC
25115806 AAATTATCCA
Statistics
Matches: 149, Mismatches: 23, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 149 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCG
Found at i:25122857 original size:27 final size:27
Alignment explanation
Indices: 25122688--25122860 Score: 159
Period size: 27 Copynumber: 6.4 Consensus size: 27
25122678 GGGGAAAAAT
* * * * *
25122688 GGTAATTTTACCCCACAAGGATATCTC
1 GGTAATTCTACTCTACAAGGGTATTTC
* * * *
25122715 GGTAATTTTACTCCACAGGGGTATTTT
1 GGTAATTCTACTCTACAAGGGTATTTC
* * *
25122742 TGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACTCTACAAGGGTATTTC
* *
25122769 GGTAATTCTA-TCCTATAGGGGTATTTC
1 GGTAATTCTACT-CTACAAGGGTATTTC
* ** *
25122796 GGTAATTCTACCCTACAAGTTTATTTT
1 GGTAATTCTACTCTACAAGGGTATTTC
*
25122823 GGTAATTCTACTTTACAAGGGTATTTC
1 GGTAATTCTACTCTACAAGGGTATTTC
25122850 GGTAATTCTAC
1 GGTAATTCTAC
25122861 AACTTATCCA
Statistics
Matches: 116, Mismatches: 28, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
27 116 1.00
ACGTcount: A:0.25, C:0.18, G:0.17, T:0.39
Consensus pattern (27 bp):
GGTAATTCTACTCTACAAGGGTATTTC
Found at i:25129754 original size:10 final size:10
Alignment explanation
Indices: 25129741--25129788 Score: 53
Period size: 10 Copynumber: 4.7 Consensus size: 10
25129731 AAAACCTGTC
25129741 AAAAA-TAAT
1 AAAAATTAAT
25129750 AAAAATTAAT
1 AAAAATTAAT
*
25129760 CAAAATTAATT
1 AAAAATTAA-T
25129771 ATAAAATTAAT
1 A-AAAATTAAT
*
25129782 TAAAATT
1 AAAAATT
25129789 CATTATGTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
9 5 0.15
10 18 0.55
11 2 0.06
12 8 0.24
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (10 bp):
AAAAATTAAT
Found at i:25129779 original size:22 final size:22
Alignment explanation
Indices: 25129739--25129794 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
25129729 TGAAAACCTG
*
25129739 TCAAAAATAA-TA-AAAATTAA
1 TCAAAATTAATTATAAAATTAA
25129759 TCAAAATTAATTATAAAATTAA
1 TCAAAATTAATTATAAAATTAA
* *
25129781 TTAAAATTCATTAT
1 TCAAAATTAATTAT
25129795 GTTAGTAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 9 0.29
21 2 0.06
22 20 0.65
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (22 bp):
TCAAAATTAATTATAAAATTAA
Found at i:25135246 original size:24 final size:25
Alignment explanation
Indices: 25135206--25135288 Score: 125
Period size: 25 Copynumber: 3.4 Consensus size: 25
25135196 CTGGAGGCCT
25135206 AGCCTCTTTTAAT-AACTGGGGC-AA
1 AGCC-CTTTTAATAAACTGGGGCAAA
*
25135230 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTAATAAACTGGGGCAAA
*
25135255 AGCCCTTTTAATAAACTCGGGCAAA
1 AGCCCTTTTAATAAACTGGGGCAAA
25135280 AGCCCTTTT
1 AGCCCTTTT
25135289 CGGTAAACTG
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
23 7 0.13
24 13 0.24
25 34 0.63
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (25 bp):
AGCCCTTTTAATAAACTGGGGCAAA
Found at i:25135262 original size:25 final size:24
Alignment explanation
Indices: 25135206--25135313 Score: 119
Period size: 25 Copynumber: 4.4 Consensus size: 24
25135196 CTGGAGGCCT
25135206 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
*
25135230 AGCCCTTTTGATAAACTGGGGCAAA
1 AGCCCTTTTAATAAACTGGGGC-AA
*
25135255 AGCCCTTTTAATAAACTCGGGCAAA
1 AGCCCTTTTAATAAACTGGGGC-AA
** * *
25135280 AGCCCTTTTCGGTAAACTGGGACAT
1 AGCCCTTTT-AATAAACTGGGGCAA
25135305 AGCCCTTTT
1 AGCCCTTTT
25135314 TGCACTTCCT
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
23 7 0.10
24 13 0.18
25 44 0.60
26 9 0.12
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:25135309 original size:50 final size:48
Alignment explanation
Indices: 25135205--25135313 Score: 139
Period size: 50 Copynumber: 2.2 Consensus size: 48
25135195 ACTGGAGGCC
* *
25135205 TAGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTGATAAACTGGGGCAA
1 TAGCC-CTTTTAATAACTCGGGCAAAGCCCTTTTGATAAACTGGGACAA
* *
25135254 AAGCCCTTTTAATAAACTCGGGCAAAAGCCCTTTTCGGTAAACTGGGAC-A
1 TAGCCCTTTTAAT-AACTCGGGC-AAAGCCCTTTT-GATAAACTGGGACAA
25135304 TAGCCCTTTT
1 TAGCCCTTTT
25135314 TGCACTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
48 8 0.15
49 12 0.23
50 21 0.40
51 11 0.21
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (48 bp):
TAGCCCTTTTAATAACTCGGGCAAAGCCCTTTTGATAAACTGGGACAA
Found at i:25135384 original size:20 final size:20
Alignment explanation
Indices: 25135361--25135427 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
25135351 TTATGAATAC
25135361 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
25135381 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
25135401 ATCATGTGCATATTATATCA-
1 ATCATGTGCATATCATA-CAT
25135421 ATCATGT
1 ATCATGT
25135428 ATATCAAATC
Statistics
Matches: 45, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:25135391 original size:40 final size:39
Alignment explanation
Indices: 25135347--25135427 Score: 94
Period size: 40 Copynumber: 2.0 Consensus size: 39
25135337 CCCAACCCAA
25135347 TGCATTATGAATAC-ATCATGTGCATATCATA-CATATCATG
1 TGCA-TAT-AATACAATCATGTGCATATCATATCA-ATCATG
* *
25135387 TGCATATCATACATATCATGTGCATATTATATCAATCATG
1 TGCATATAATACA-ATCATGTGCATATCATATCAATCATG
25135427 T
1 T
25135428 ATATCAAATC
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
38 4 0.11
39 3 0.08
40 27 0.75
41 2 0.06
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (39 bp):
TGCATATAATACAATCATGTGCATATCATATCAATCATG
Found at i:25135392 original size:11 final size:11
Alignment explanation
Indices: 25135361--25135413 Score: 60
Period size: 11 Copynumber: 5.2 Consensus size: 11
25135351 TTATGAATAC
25135361 ATCATGTGCAT
1 ATCATGTGCAT
*
25135372 ATCA--TACAT
1 ATCATGTGCAT
25135381 ATCATGTGCAT
1 ATCATGTGCAT
*
25135392 ATCA--TACAT
1 ATCATGTGCAT
25135401 ATCATGTGCAT
1 ATCATGTGCAT
25135412 AT
1 AT
25135414 TATATCAATC
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
9 16 0.47
11 18 0.53
ACGTcount: A:0.34, C:0.19, G:0.11, T:0.36
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:25145739 original size:31 final size:31
Alignment explanation
Indices: 25145704--25145767 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
25145694 TCTTTTCATA
*
25145704 TTTCATATTTCATAACACTGGGCTGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
**
25145735 TTTCATATTTCATATTACTGGGCCGAAGCCT
1 TTTCATATTTCATAACACTGGGCCGAAGCCT
25145766 TT
1 TT
25145768 ACTGTAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.23, C:0.22, G:0.16, T:0.39
Consensus pattern (31 bp):
TTTCATATTTCATAACACTGGGCCGAAGCCT
Found at i:25146057 original size:25 final size:24
Alignment explanation
Indices: 25145982--25146058 Score: 102
Period size: 25 Copynumber: 3.2 Consensus size: 24
25145972 GCCTAGCCTA
25145982 TTTTAAT-AACTGGGGCAAAGCCC
1 TTTTAATAAACTGGGGCAAAGCCC
*
25146005 TTTTAATAAACTGGGGCAAAAGCTC
1 TTTTAATAAACTGGGGC-AAAGCCC
* *
25146030 TTTTCAGTAAACTGGGGCATAGCCC
1 TTTT-AATAAACTGGGGCAAAGCCC
25146055 TTTT
1 TTTT
25146059 TGCACTTCCT
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
23 7 0.15
24 9 0.19
25 19 0.40
26 12 0.26
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (24 bp):
TTTTAATAAACTGGGGCAAAGCCC
Found at i:25146129 original size:20 final size:20
Alignment explanation
Indices: 25146106--25146172 Score: 100
Period size: 20 Copynumber: 3.4 Consensus size: 20
25146096 TTATGAATAC
25146106 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
25146126 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
* *
25146146 ATTATGCGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
25146166 ATCATGT
1 ATCATGT
25146173 ATATCAAATC
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
20 40 0.95
21 2 0.05
ACGTcount: A:0.34, C:0.19, G:0.10, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:25146236 original size:25 final size:25
Alignment explanation
Indices: 25146208--25146255 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
25146198 ATAATTAAAT
* * *
25146208 CCTAGGGGTATAATGGTCATTTTTA
1 CCTAGGGGCAAAATAGTCATTTTTA
25146233 CCTAGGGGCAAAATAGTCATTTT
1 CCTAGGGGCAAAATAGTCATTTT
25146256 CATAATATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGGGCAAAATAGTCATTTTTA
Found at i:25149100 original size:43 final size:43
Alignment explanation
Indices: 25149035--25149146 Score: 145
Period size: 43 Copynumber: 2.6 Consensus size: 43
25149025 AATGTGATGA
** *
25149035 AATGGATTTAGCCTGGACGGGTAATCCATTGATCTT-AGTATGG
1 AATGGATTTAGCCCAGACGGGTAATCCATTGAT-TTCAGTATAG
* * *
25149078 AATGGATTTAGCCCAGATGGGTAACCCATTGATTTCAGTATAT
1 AATGGATTTAGCCCAGACGGGTAATCCATTGATTTCAGTATAG
*
25149121 AAAGGATTTAGCCCAGACGGGTAATC
1 AATGGATTTAGCCCAGACGGGTAATC
25149147 TTGAGTTGAA
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 2 0.03
43 57 0.97
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.29
Consensus pattern (43 bp):
AATGGATTTAGCCCAGACGGGTAATCCATTGATTTCAGTATAG
Found at i:25152976 original size:40 final size:40
Alignment explanation
Indices: 25152939--25153158 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
25152929 GCTACTCGTT
*
25152939 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
25152979 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
25153019 CAAATGCCTTCGGG-CTTAGCCCGGAATTAG-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
25153057 CAAATGCCTTC--G-CTTAG-CCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
25153093 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
25153134 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25153159 CATCATTCAA
Statistics
Matches: 158, Mismatches: 14, Indels: 16
0.84 0.07 0.09
Matches are distributed among these distances:
35 10 0.06
36 25 0.16
37 1 0.01
38 18 0.11
39 19 0.12
40 72 0.46
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:25153089 original size:36 final size:37
Alignment explanation
Indices: 25152967--25153105 Score: 174
Period size: 36 Copynumber: 3.7 Consensus size: 37
25152957 AGCCCGGTTA
* * *
25152967 TAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTC-GG-CTT-AGCCGGAAT
25153007 TAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTC-GGCTTAG-CCGGAAT
*
25153046 TAG-ATCTCGCACAAATGCCTTC-GCTTAGCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGCTTAGCCGGAAT
*
25153081 TAGTATCTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGG
25153106 ATCTTAGTCC
Statistics
Matches: 92, Mismatches: 4, Indels: 9
0.88 0.04 0.09
Matches are distributed among these distances:
35 10 0.11
36 25 0.27
37 1 0.01
38 19 0.21
39 12 0.13
40 25 0.27
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (37 bp):
TAGTAACTCGCACAAATGCCTTCGGCTTAGCCGGAAT
Found at i:25153094 original size:74 final size:79
Alignment explanation
Indices: 25152939--25153158 Score: 222
Period size: 74 Copynumber: 2.8 Consensus size: 79
25152929 GCTACTCGTT
* *
25152939 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTC-GGACTTAACCCGG
*
25153004 ATTTAGTAACTCGCA
65 AATTAGTAACTCGCA
* * *
25153019 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAG-ATCTCGCACAAATGCCTTC-G-CTT-AGCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGACTTAACCCGG
*
25153078 AATTAGTATCTCGCA
65 AATTAGTAACTCGCA
* * * * * *
25153093 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CATAGCCCGGATATAGTAAC-TCGCACAAATGCCTTC-GGACTTAACCC
25153156 GGA
63 GGA
25153159 CATCATTCAA
Statistics
Matches: 116, Mismatches: 14, Indels: 20
0.77 0.09 0.13
Matches are distributed among these distances:
73 2 0.02
74 29 0.25
75 15 0.13
76 9 0.08
77 8 0.07
78 19 0.16
79 15 0.13
80 19 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGGA
ATTAGTAACTCGCA
Found at i:25160373 original size:79 final size:77
Alignment explanation
Indices: 25160273--25160496 Score: 243
Period size: 79 Copynumber: 2.8 Consensus size: 77
25160263 GCTCCTCGTT
* *
25160273 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCTGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAA-TGCCTTCGGGACTTAACCCGG
*
25160338 ATTTAGTAACTCGCA
63 AATTAGTAACTCGCA
* * *
25160353 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCAC-AATGCCTTCGGGACTTAACCCGGA
*
25160417 ATTAGTATCTCGCA
64 ATTAGTAACTCGCA
* * * * * * *
25160431 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAATGCCTTCGGGACTTAACCCGG
25160496 A
63 A
25160497 CATCATTCAA
Statistics
Matches: 123, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
78 35 0.28
79 55 0.45
80 33 0.27
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (77 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAATGCCTTCGGGACTTAACCCGGAAT
TAGTAACTCGCA
Found at i:25160394 original size:39 final size:40
Alignment explanation
Indices: 25160273--25160496 Score: 262
Period size: 40 Copynumber: 5.7 Consensus size: 40
25160263 GCTCCTCGTT
* *
25160273 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * * *
25160313 CAATTGCCTTCGGGACTTAACCTGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
25160353 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
25160392 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
25160431 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
25160472 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25160497 CATCATTCAA
Statistics
Matches: 162, Mismatches: 15, Indels: 13
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.01
39 73 0.45
40 74 0.46
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:25176875 original size:40 final size:40
Alignment explanation
Indices: 25176704--25176849 Score: 181
Period size: 40 Copynumber: 3.7 Consensus size: 40
25176694 GCTCCTCGTT
* * * *
25176704 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCACA
1 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTATCTCGCA
* * *
25176744 TAATTGCCTTCGGTTCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTATCTCGCA
*
25176784 CAAATGCCTTC-GATCTTAGTCCGTATTTAGTATCTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTATCTCGCA
25176823 CAAATGCCTTCGGATCTTAGTCCGGAT
1 CAAATGCCTTCGGATCTTAGTCCGGAT
25176850 ATGGTCACTT
Statistics
Matches: 91, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
39 39 0.43
40 50 0.55
41 2 0.02
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.32
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGTCCGGATTTAGTATCTCGCA
Found at i:25184962 original size:40 final size:40
Alignment explanation
Indices: 25184791--25184936 Score: 199
Period size: 40 Copynumber: 3.7 Consensus size: 40
25184781 GCTCCTCGTT
* * *
25184791 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTC-CA
1 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTATCTCGCA
* * *
25184830 TAATTGCCTTCGGTTCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTATCTCGCA
25184870 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTATCTCGCA
25184910 CAAATGCCTTCGGATCTTAGTCCGGAT
1 CAAATGCCTTCGGATCTTAGTCCGGAT
25184937 ATGGTTACTT
Statistics
Matches: 95, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
38 2 0.02
39 25 0.26
40 68 0.72
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.32
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGTCCGGATTTAGTATCTCGCA
Found at i:25184969 original size:40 final size:40
Alignment explanation
Indices: 25184791--25184975 Score: 173
Period size: 40 Copynumber: 4.7 Consensus size: 40
25184781 GCTCCTCGTT
* * * * *
25184791 CAAATGCCTTCGGGA-CATAGCCCGGTTATAGTAACT-CCA
1 CAAATGCCTTC-GGATCTTAGTCCGGATATAGTATCTAGCA
* * * * *
25184830 TAATTGCCTTCGGTTCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATATAGTATCTAGCA
* *
25184870 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATATAGTATCTAGCA
*
25184910 CAAATGCCTTCGGATCTTAGTCCGGATATGGT-TACTTAGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATATAGTAT-C-TAGCA
*
25184951 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTC-GGATCTTAGTCCGGA
25184976 CATCATTCAA
Statistics
Matches: 125, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
38 2 0.02
39 26 0.21
40 86 0.69
41 11 0.09
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.30
Consensus pattern (40 bp):
CAAATGCCTTCGGATCTTAGTCCGGATATAGTATCTAGCA
Found at i:25192318 original size:48 final size:49
Alignment explanation
Indices: 25192235--25192499 Score: 184
Period size: 48 Copynumber: 5.5 Consensus size: 49
25192225 GTCAAGGCCA
* * * * ** *
25192235 ATGCAATGTCCTAGAGATGGTCTTACACTAACTCTCGTCTCAAT-GCTG
1 ATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCGTCTCAATCGCCG
* * * *
25192283 ATGCCATGTCCCAGACATGGTCTTATATTGGCTCTC-AC-AACATCACCG
1 ATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCGTCTCA-ATCGCCG
* * * * * *
25192331 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCGTATC-TTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCGTCTCAATCGCCG
* * * *
25192379 ATGCCATGTCCCAGACATGGTCTTATACTGGCTCTC-AC-AACATCACTG
1 ATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCGTCTCA-ATCGCCG
* * * * * * * *
25192427 ATGCCATGTTCAAAACATGGTCTTACACTGGCTTTCGTATC-TTGGCCG
1 ATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCGTCTCAATCGCCG
* *
25192475 ACGCCATGTCTCAGACATGGTCTTA
1 ATGCCATGTCCCAGACATGGTCTTA
25192500 CACTAGCACA
Statistics
Matches: 161, Mismatches: 48, Indels: 16
0.72 0.21 0.07
Matches are distributed among these distances:
46 1 0.01
47 3 0.02
48 157 0.98
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCGTCTCAATCGCCG
Found at i:25192382 original size:96 final size:96
Alignment explanation
Indices: 25192251--25192499 Score: 383
Period size: 96 Copynumber: 2.6 Consensus size: 96
25192241 TGTCCTAGAG
** * * * *
25192251 ATGGTCTTACACTAACTCTCGTCTCAAT-GCTGATGCCATGTCCCAGACATGGTCTTATATTGGC
1 ATGGTCTTACACTGGCTCTCGTATC-TTGGCCGATGCCATGTCCCAGACATGGTCTTATACTGGC
*
25192315 TCTCACAACATCACCGATGCCATGTTCCAAAC
65 TCTCACAACATCACCGATGCCATGTTCAAAAC
25192347 ATGGTCTTACACTGGCTCTCGTATCTTGGCCGATGCCATGTCCCAGACATGGTCTTATACTGGCT
1 ATGGTCTTACACTGGCTCTCGTATCTTGGCCGATGCCATGTCCCAGACATGGTCTTATACTGGCT
*
25192412 CTCACAACATCACTGATGCCATGTTCAAAAC
66 CTCACAACATCACCGATGCCATGTTCAAAAC
* * *
25192443 ATGGTCTTACACTGGCTTTCGTATCTTGGCCGACGCCATGTCTCAGACATGGTCTTA
1 ATGGTCTTACACTGGCTCTCGTATCTTGGCCGATGCCATGTCCCAGACATGGTCTTA
25192500 CACTAGCACA
Statistics
Matches: 141, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
95 1 0.01
96 140 0.99
ACGTcount: A:0.22, C:0.29, G:0.18, T:0.30
Consensus pattern (96 bp):
ATGGTCTTACACTGGCTCTCGTATCTTGGCCGATGCCATGTCCCAGACATGGTCTTATACTGGCT
CTCACAACATCACCGATGCCATGTTCAAAAC
Found at i:25192500 original size:48 final size:47
Alignment explanation
Indices: 25192328--25192503 Score: 199
Period size: 48 Copynumber: 3.7 Consensus size: 47
25192318 CACAACATCA
25192328 CCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCGTATCTTGG
1 CCGATGCCATGTT-CAAACATGGTCTTACACTGGCTCTCGTATCTTGG
* * * ** * * **
25192376 CCGATGCCATGTCCCAGACATGGTCTTATACTGGCTCTCACAACATCA
1 CCGATGCCATGT-TCAAACATGGTCTTACACTGGCTCTCGTATCTTGG
* *
25192424 CTGATGCCATGTTCAAAACATGGTCTTACACTGGCTTTCGTATCTTGG
1 CCGATGCCATGTTC-AAACATGGTCTTACACTGGCTCTCGTATCTTGG
* *
25192472 CCGACGCCATGTCTCAGACATGGTCTTACACT
1 CCGATGCCATGT-TCAAACATGGTCTTACACT
25192504 AGCACACATA
Statistics
Matches: 102, Mismatches: 23, Indels: 6
0.78 0.18 0.05
Matches are distributed among these distances:
47 1 0.01
48 99 0.97
49 2 0.02
ACGTcount: A:0.22, C:0.30, G:0.19, T:0.30
Consensus pattern (47 bp):
CCGATGCCATGTTCAAACATGGTCTTACACTGGCTCTCGTATCTTGG
Found at i:25198783 original size:13 final size:13
Alignment explanation
Indices: 25198765--25198790 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25198755 TATATTATAT
25198765 GTGTGAAAATTTC
1 GTGTGAAAATTTC
25198778 GTGTGAAAATTTC
1 GTGTGAAAATTTC
25198791 ATTGTTTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:25199939 original size:43 final size:43
Alignment explanation
Indices: 25199892--25200054 Score: 168
Period size: 43 Copynumber: 3.8 Consensus size: 43
25199882 ATTCTAATAG
* * *
25199892 GTGATTTTGTGTAAGACCATGTCTGGGACGTTGGCATCGATTT
1 GTGATTTCGTGTAAGACCATATCTGGGACGTTGGCATCGATAT
* * * * *
25199935 GTGATTTACGTGTAAGACCATGTCTAGGACATCGACATC-ATAT
1 GTGATTT-CGTGTAAGACCATATCTGGGACGTTGGCATCGATAT
* * *
25199978 ATGAGTTCGTGTAAGACCTTATCTGGGACAG-TGGCATCGATAT
1 GTGATTTCGTGTAAGACCATATCTGGGAC-GTTGGCATCGATAT
* * *
25200021 GTGATTACATGTAAGACCACATCTGGGACGTTGG
1 GTGATTTCGTGTAAGACCATATCTGGGACGTTGG
25200055 TGTTGTATGA
Statistics
Matches: 96, Mismatches: 20, Indels: 8
0.77 0.16 0.06
Matches are distributed among these distances:
42 25 0.26
43 45 0.47
44 26 0.27
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (43 bp):
GTGATTTCGTGTAAGACCATATCTGGGACGTTGGCATCGATAT
Found at i:25208743 original size:13 final size:13
Alignment explanation
Indices: 25208725--25208749 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25208715 TATATTATAT
25208725 GTATGAAAATTTC
1 GTATGAAAATTTC
25208738 GTATGAAAATTT
1 GTATGAAAATTT
25208750 TATTGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.40
Consensus pattern (13 bp):
GTATGAAAATTTC
Found at i:25210001 original size:43 final size:41
Alignment explanation
Indices: 25209866--25210011 Score: 150
Period size: 42 Copynumber: 3.5 Consensus size: 41
25209856 TTTGATTTAA
* ** *
25209866 TGTAAGACCACGTCTGGGATGTTGGCATCGATTTGTGATTCG
1 TGTAAGACCATGTCTGGGA-CATGGCATCGATATGTGATTCG
* * *
25209908 TGTAAGACCATGTCTGGGACATCGACATTG-TATATGAGTTCG
1 TGTAAGACCATGTCTGGGACAT-GGCATCGATATGTGA-TTCG
* * *
25209950 TGTAAGACCCTATCTGGGACAGTGGCATCGATATGTGATTACA
1 TGTAAGACCATGTCTGGGACA-TGGCATCGATATGTGATT-CG
25209993 TGTAAGACCATGTCTGGGA
1 TGTAAGACCATGTCTGGGA
25210012 TGTTGGTGTT
Statistics
Matches: 84, Mismatches: 15, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
41 6 0.07
42 53 0.63
43 25 0.30
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (41 bp):
TGTAAGACCATGTCTGGGACATGGCATCGATATGTGATTCG
Found at i:25210996 original size:26 final size:24
Alignment explanation
Indices: 25210966--25211015 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
25210956 AAATAAAAAA
*
25210966 ATTTAAAAATATAATAAATCAAATAT
1 ATTTAAAAACATAA-AAA-CAAATAT
25210992 ATTTAAAAACATAAAAACAAATAT
1 ATTTAAAAACATAAAAACAAATAT
25211016 TAAAACAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.30
25 3 0.13
26 13 0.57
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (24 bp):
ATTTAAAAACATAAAAACAAATAT
Found at i:25211035 original size:21 final size:21
Alignment explanation
Indices: 25210986--25211044 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
25210976 ATAATAAATC
*
25210986 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
25211006 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
25211028 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
25211045 TTCTTAAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:25211121 original size:15 final size:16
Alignment explanation
Indices: 25211091--25211123 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
25211081 AAATGGTTAT
25211091 ATTAAAAATTTAAAATA
1 ATTAAAAA-TTAAAATA
25211108 ATTAAAAA-TAAAATA
1 ATTAAAAATTAAAATA
25211123 A
1 A
25211124 AAAAAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
17 8 0.50
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTAAAAATTAAAATA
Found at i:25213712 original size:48 final size:48
Alignment explanation
Indices: 25213652--25213975 Score: 316
Period size: 48 Copynumber: 6.8 Consensus size: 48
25213642 TAGGGTGAAT
* *
25213652 TGCCAATGCCATGTTCCAGACATGGTCTTACACTAGCTCTCGTCTCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAA
25213700 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAA
* * * * **
25213748 TGCCGATGCCATATCCCAGACATGGTCTTACACTAGCTTTCATGT-TG
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAA
* * * * * * *
25213795 TGGCTGATGCCATGTCCTAAACATGGTCTTACACTAGCACACATATCAA
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAA
* * * *
25213844 TGCCGATGCCATGTCCCAGACATGGTCTTACACTGGATCTC-AC-AACA
1 TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCA-A
* * * * * * **
25213891 TCGCCAATGCCATGTTCCA-ACATGGTCTTACACTGGTTCTTGTAT-TG
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAA
* *
25213938 TGGCTGACGCCATGTCCCAGACATGGTCTTACACTAGC
1 T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
25213976 ACACATATCA
Statistics
Matches: 226, Mismatches: 43, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
46 1 0.00
47 37 0.16
48 187 0.83
49 1 0.00
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
TGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTCTCAA
Found at i:25225649 original size:26 final size:27
Alignment explanation
Indices: 25225596--25225649 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
25225586 ATGACCAAAA
25225596 TACCCCTAAAGGGTAAAATAACTATTT
1 TACCCCTAAAGGGTAAAATAACTATTT
** *
25225623 TACCCCTCGAGGGT-AAATAACTGTTT
1 TACCCCTAAAGGGTAAAATAACTATTT
25225649 T
1 T
25225650 GTGGTATGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 12 0.50
27 12 0.50
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.31
Consensus pattern (27 bp):
TACCCCTAAAGGGTAAAATAACTATTT
Found at i:25225841 original size:26 final size:26
Alignment explanation
Indices: 25225812--25225861 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
25225802 GCGTTACTGT
25225812 TACTGGAAGCTTTGCTGCGATATTAA
1 TACTGGAAGCTTTGCTGCGATATTAA
* * *
25225838 TACTGGCAGTTTTGCTGTGATATT
1 TACTGGAAGCTTTGCTGCGATATT
25225862 GGTGTGTTGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.22, C:0.14, G:0.24, T:0.40
Consensus pattern (26 bp):
TACTGGAAGCTTTGCTGCGATATTAA
Found at i:25227447 original size:30 final size:30
Alignment explanation
Indices: 25227406--25227470 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
25227396 TGGCTGTGTG
25227406 ACTTAGCCATTTGACTTCAATTTCTTCATA
1 ACTTAGCCATTTGACTTCAATTTCTTCATA
*
25227436 ACTTGGCCATTTGACTTCAATTTCTTCATA
1 ACTTAGCCATTTGACTTCAATTTCTTCATA
*
25227466 CCTTA
1 ACTTA
25227471 AAAGTTAGAG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.25, C:0.25, G:0.08, T:0.43
Consensus pattern (30 bp):
ACTTAGCCATTTGACTTCAATTTCTTCATA
Found at i:25240078 original size:39 final size:40
Alignment explanation
Indices: 25239996--25240219 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
25239986 GCTACTCGTT
* *
25239996 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
25240036 CAAATGCCTTCGGGACTTAACCC-GATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
25240075 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
25240115 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
25240154 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
25240195 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
25240220 CATCATTCAA
Statistics
Matches: 161, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 67 0.42
40 81 0.50
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:25240099 original size:79 final size:79
Alignment explanation
Indices: 25239996--25240217 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 79
25239986 GCTACTCGTT
* *
25239996 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
*
25240061 TTTAGTAACTCGCA
66 ATTAGTAACTCGCA
* * *
25240075 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGTACCAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCC-
*
25240138 GAATTAGTATCTCGCA
64 GAATTAGTAACTCGCA
* * * * *
25240154 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
25240217 G
64 G
25240218 GACATCATTC
Statistics
Matches: 122, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
78 11 0.09
79 95 0.78
80 16 0.13
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
ATTAGTAACTCGCA
Found at i:25248065 original size:78 final size:79
Alignment explanation
Indices: 25247882--25248101 Score: 268
Period size: 78 Copynumber: 2.8 Consensus size: 79
25247872 GCTCCTCGTT
* * *
25247882 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACCAATGCCTTCGGGACTT-AGCCG
*
25247946 GATTTAGTAACTCGCA
64 GAATTAGTAACTCGCA
*
25247962 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATGCCTTCGGGACTTAGCCGGA
*
25248026 ATTAGTATCTCGCA
66 ATTAGTAACTCGCA
* * * * * *
25248040 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGCCTTCGGGACTTAGCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACCAATGCCTTCGGGACTTAGCC
25248102 CGGACATCAT
Statistics
Matches: 123, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
77 3 0.02
78 56 0.46
79 14 0.11
80 48 0.39
81 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATGCCTTCGGGACTTAGCCGGA
ATTAGTAACTCGCA
Found at i:25248065 original size:118 final size:120
Alignment explanation
Indices: 25247884--25248105 Score: 292
Period size: 118 Copynumber: 1.9 Consensus size: 120
25247874 TCCTCGTTCA
*
25247884 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
25247949 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
25248004 AATGCCTTCGGG-CTTAG-CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
25248065 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
25248106 CATCATTCAA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
117 4 0.04
118 61 0.69
119 12 0.13
120 12 0.13
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:25248105 original size:40 final size:40
Alignment explanation
Indices: 25247882--25248105 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
25247872 GCTCCTCGTT
* *
25247882 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
25247922 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
25247962 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
25248002 CCAATGCCTTCGGG-CTTAG-CCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
25248040 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
25248081 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25248106 CATCATTCAA
Statistics
Matches: 163, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
37 2 0.01
38 26 0.16
39 9 0.06
40 114 0.70
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:25250218 original size:29 final size:30
Alignment explanation
Indices: 25250160--25250218 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
25250150 GTCTTTTGAA
* *
25250160 AATATTAACAAAAAGAGACATCTAATTTTT
1 AATATTAACAAAAAGAGACAACTAAATTTT
*
25250190 AATATTTACAAAAAGAG-CAACTAAATTTT
1 AATATTAACAAAAAGAGACAACTAAATTTT
25250219 GAAAATAATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 10 0.38
30 16 0.62
ACGTcount: A:0.51, C:0.10, G:0.07, T:0.32
Consensus pattern (30 bp):
AATATTAACAAAAAGAGACAACTAAATTTT
Found at i:25252020 original size:23 final size:23
Alignment explanation
Indices: 25251984--25252094 Score: 79
Period size: 23 Copynumber: 4.8 Consensus size: 23
25251974 GACTCACCAT
25251984 AGCTCATAGAAGCTTACT-ATTTC
1 AGCTCATAGAAGCTTACTGA-TTC
* *
25252007 AGCTCATTGGAGCTTACTGATTC
1 AGCTCATAGAAGCTTACTGATTC
* *
25252030 AGCATGA-AAAAGCTTACTG-TTC
1 AGC-TCATAGAAGCTTACTGATTC
* *
25252052 AGCTCAGTAG-AGCTTACCGTTTTC
1 AGCTCA-TAGAAGCTTACTG-ATTC
*
25252076 ATCTCAATAG-AGCTTACTG
1 AGCTC-ATAGAAGCTTACTG
25252095 TTTATTAGCT
Statistics
Matches: 70, Mismatches: 11, Indels: 13
0.74 0.12 0.14
Matches are distributed among these distances:
21 2 0.03
22 14 0.20
23 32 0.46
24 21 0.30
25 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (23 bp):
AGCTCATAGAAGCTTACTGATTC
Done.