Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 81 of 295
Found at i:25252116 original size:26 final size:24
Alignment explanation
Indices: 25252049--25252119 Score: 88
Period size: 24 Copynumber: 2.9 Consensus size: 24
25252039 AAGCTTACTG
25252049 TTCAGCTCAGTAGAGCTTACCGTT
1 TTCAGCTCAGTAGAGCTTACCGTT
* * *
25252073 TTCATCTCAATAGAGCTTACTGTT
1 TTCAGCTCAGTAGAGCTTACCGTT
*
25252097 TATTAGCTCAGTAAGAGCTTACC
1 T-TCAGCTCAGT-AGAGCTTACC
25252120 ACCCATGACT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
24 22 0.58
25 7 0.18
26 9 0.24
ACGTcount: A:0.25, C:0.23, G:0.17, T:0.35
Consensus pattern (24 bp):
TTCAGCTCAGTAGAGCTTACCGTT
Found at i:25259179 original size:22 final size:22
Alignment explanation
Indices: 25259141--25259223 Score: 96
Period size: 22 Copynumber: 3.6 Consensus size: 22
25259131 TAGTTCATTG
* *
25259141 GAGCTTACCGATTTAGCTTGAA-A
1 GAGCTTA-CTATTTAGC-TCAATA
25259164 GAGCTTACTATTTAGCTCAATA
1 GAGCTTACTATTTAGCTCAATA
*
25259186 GAGCTTACTGTTTTCAGCTCAATA
1 GAGCTTACT-ATTT-AGCTCAATA
25259210 GAGCTTACTATTTA
1 GAGCTTACTATTTA
25259224 TGAGCTCAGT
Statistics
Matches: 53, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
21 3 0.06
22 19 0.36
23 13 0.25
24 18 0.34
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (22 bp):
GAGCTTACTATTTAGCTCAATA
Found at i:25259209 original size:24 final size:22
Alignment explanation
Indices: 25259163--25259243 Score: 90
Period size: 24 Copynumber: 3.4 Consensus size: 22
25259153 TTAGCTTGAA
*
25259163 AGAGCTTACTATTTAGCTCAAT
1 AGAGCTTACTTTTTAGCTCAAT
25259185 AGAGCTTACTGTTTTCAGCTCAAT
1 AGAGCTTACT-TTTT-AGCTCAAT
*
25259209 AGAGCTTACTATTTATGAGCTCAGT
1 AGAGCTTACT-TTT-T-AGCTCAAT
25259234 AAGAGCTTAC
1 -AGAGCTTAC
25259244 CGCCCATGAC
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
22 10 0.20
23 3 0.06
24 21 0.41
25 8 0.16
26 9 0.18
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.35
Consensus pattern (22 bp):
AGAGCTTACTTTTTAGCTCAAT
Found at i:25259653 original size:39 final size:40
Alignment explanation
Indices: 25259594--25259678 Score: 127
Period size: 39 Copynumber: 2.1 Consensus size: 40
25259584 GCTATAAGCT
* *
25259594 TACTCTGTTTTGTTTTCTATGTATTATAGGGTTCTAGCGC
1 TACTCTATTTTGTTCTCTATGTATTATAGGGTTCTAGCGC
*
25259634 TACTCTATTTT-TTCTCTATGTCTTATAGGGTTCTAGCGC
1 TACTCTATTTTGTTCTCTATGTATTATAGGGTTCTAGCGC
25259673 TCACTC
1 T-ACTC
25259679 GTTTTGGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
39 27 0.66
40 14 0.34
ACGTcount: A:0.15, C:0.20, G:0.16, T:0.48
Consensus pattern (40 bp):
TACTCTATTTTGTTCTCTATGTATTATAGGGTTCTAGCGC
Found at i:25261826 original size:41 final size:41
Alignment explanation
Indices: 25261769--25261849 Score: 126
Period size: 41 Copynumber: 2.0 Consensus size: 41
25261759 TTATAGGTGC
* *
25261769 CGAAACTAACTGACTTTTCAAAACATTGAAAGCTCTTAAGT
1 CGAAACTAACTAACTTTTCAAAACATTAAAAGCTCTTAAGT
* *
25261810 CGAAACTAACTAACTTTTCAAATCATTAAAATCTCTTAAG
1 CGAAACTAACTAACTTTTCAAAACATTAAAAGCTCTTAAG
25261850 CGCTCCTTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (41 bp):
CGAAACTAACTAACTTTTCAAAACATTAAAAGCTCTTAAGT
Found at i:25265815 original size:14 final size:14
Alignment explanation
Indices: 25265796--25265822 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
25265786 AAATTTTAAC
25265796 AAAGTAAAATAAAT
1 AAAGTAAAATAAAT
25265810 AAAGTAAAATAAA
1 AAAGTAAAATAAA
25265823 GTTCCTATGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.19
Consensus pattern (14 bp):
AAAGTAAAATAAAT
Found at i:25267354 original size:10 final size:10
Alignment explanation
Indices: 25267339--25267377 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
25267329 GTGCAAATCT
*
25267339 ATCAAAAATA
1 ATCAAAATTA
25267349 ATCAAAATTA
1 ATCAAAATTA
25267359 ATCAAAATTA
1 ATCAAAATTA
*
25267369 ATTAAAATT
1 ATCAAAATT
25267378 CATTATGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.31
Consensus pattern (10 bp):
ATCAAAATTA
Found at i:25271781 original size:27 final size:27
Alignment explanation
Indices: 25271750--25271812 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
25271740 TATTTACTTG
25271750 AAAATGACTGAAATACCCTCAT-AGGAT
1 AAAATGACTGAAATACCCTCATAAGG-T
* **
25271777 AAAATGACTGTAATACCCTTGTAAGGT
1 AAAATGACTGAAATACCCTCATAAGGT
25271804 AAAATGACT
1 AAAATGACT
25271813 ATTTTGCCCT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
27 29 0.91
28 3 0.09
ACGTcount: A:0.43, C:0.16, G:0.16, T:0.25
Consensus pattern (27 bp):
AAAATGACTGAAATACCCTCATAAGGT
Found at i:25271822 original size:27 final size:27
Alignment explanation
Indices: 25271801--25272016 Score: 224
Period size: 27 Copynumber: 8.0 Consensus size: 27
25271791 ACCCTTGTAA
*
25271801 GGTAAAATGACTATTTTGCCCTTGTGT
1 GGTAAAATGACTATTTTGCCCTTATGT
* *
25271828 GTTAAAATGA-TGATTTTGTCCTTATGT
1 GGTAAAATGACT-ATTTTGCCCTTATGT
* *
25271855 GATAAAATGAC-AGTTTTTCCCTTATGT
1 GGTAAAATGACTA-TTTTGCCCTTATGT
* * *
25271882 GGAAAAATGATTGTTTTGCCCTTATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
*
25271909 GGTAAAATGAC-AGTTTTTCCCTTATGT
1 GGTAAAATGACTA-TTTTGCCCTTATGT
* * *
25271936 GGTAAAATGACAATTTTTCCCTTATGA
1 GGTAAAATGACTATTTTGCCCTTATGT
25271963 GGTAAAATGACTATTTTGCCCTTAT-T
1 GGTAAAATGACTATTTTGCCCTTATGT
* ** * *
25271989 TGTAGGATGACTGTTTTGCCCCTATGT
1 GGTAAAATGACTATTTTGCCCTTATGT
25272016 G
1 G
25272017 ATGTATGTTT
Statistics
Matches: 157, Mismatches: 25, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
26 22 0.14
27 134 0.85
28 1 0.01
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.41
Consensus pattern (27 bp):
GGTAAAATGACTATTTTGCCCTTATGT
Found at i:25271877 original size:81 final size:81
Alignment explanation
Indices: 25271800--25272018 Score: 264
Period size: 81 Copynumber: 2.7 Consensus size: 81
25271790 TACCCTTGTA
* * *
25271800 AGGTAAAATGACTATTTTGCCCTTGTGTGTTAAAATGA-TGATTTTGT-CCTTATGTGATAAAAT
1 AGGTAAAATGACTATTTTGCCCTTATGTGGTAAAATGACAG-TTTT-TCCCTTATGTGATAAAAT
25271863 GACAGTTTTTCCCTTATG
64 GACAGTTTTTCCCTTATG
* * * * *
25271881 TGGAAAAATGATTGTTTTGCCCTTATGTGGTAAAATGACAGTTTTTCCCTTATGTGGTAAAATGA
1 AGGTAAAATGACTATTTTGCCCTTATGTGGTAAAATGACAGTTTTTCCCTTATGTGATAAAATGA
*
25271946 CAATTTTTCCCTTATG
66 CAGTTTTTCCCTTATG
* ** * * *
25271962 AGGTAAAATGACTATTTTGCCCTTAT-TTGTAGGATGACTGTTTTGCCCCTATGTGAT
1 AGGTAAAATGACTATTTTGCCCTTATGTGGTAAAATGACAGTTTTTCCCTTATGTGAT
25272019 GTATGTTTAT
Statistics
Matches: 116, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
80 25 0.22
81 90 0.78
82 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.41
Consensus pattern (81 bp):
AGGTAAAATGACTATTTTGCCCTTATGTGGTAAAATGACAGTTTTTCCCTTATGTGATAAAATGA
CAGTTTTTCCCTTATG
Found at i:25272372 original size:24 final size:20
Alignment explanation
Indices: 25272339--25272401 Score: 67
Period size: 18 Copynumber: 3.0 Consensus size: 20
25272329 TAGGACTTGC
*
25272339 ATACTATTTACTGTTACTGCT
1 ATACTGTTTACTGTTACTG-T
25272360 ACTGCACTGTTTACTGTTA-T-T
1 A-T--ACTGTTTACTGTTACTGT
25272381 ATACTGTTTACTGTTACTGT
1 ATACTGTTTACTGTTACTGT
25272401 A
1 A
25272402 ATGGGCCAAG
Statistics
Matches: 36, Mismatches: 1, Indels: 11
0.75 0.02 0.23
Matches are distributed among these distances:
18 14 0.39
19 1 0.03
20 3 0.08
21 3 0.08
22 1 0.03
23 1 0.03
24 13 0.36
ACGTcount: A:0.22, C:0.17, G:0.13, T:0.48
Consensus pattern (20 bp):
ATACTGTTTACTGTTACTGT
Found at i:25273671 original size:3 final size:3
Alignment explanation
Indices: 25273663--25273717 Score: 56
Period size: 3 Copynumber: 18.0 Consensus size: 3
25273653 TATGTTGGTT
* ** * *
25273663 TAA TAA TAA AAA TAA TGC TATA TAA TAA TAA AAA TAA TAT TAA TAA
1 TAA TAA TAA TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA
25273709 TAA TAA TAA
1 TAA TAA TAA
25273718 AACCCGCTGT
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
3 39 0.95
4 2 0.05
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:25273688 original size:22 final size:21
Alignment explanation
Indices: 25273663--25273714 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 21
25273653 TATGTTGGTT
*
25273663 TAATAATAAAAATAATGCTATA
1 TAATAATAAAAATAATACTA-A
*
25273685 TAATAATAAAAATAATATTAA
1 TAATAATAAAAATAATACTAA
25273706 TAATAATAA
1 TAATAATAA
25273715 TAAAACCCGC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
21 10 0.36
22 18 0.64
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (21 bp):
TAATAATAAAAATAATACTAA
Found at i:25276020 original size:42 final size:43
Alignment explanation
Indices: 25275899--25276030 Score: 117
Period size: 43 Copynumber: 3.1 Consensus size: 43
25275889 AGATGTTCAT
* * * *
25275899 AATCAAGTA-CAATGCCAACGTCCCAGACGTGGTCTTACATGTA
1 AATCAA-TATCAATGCCGATGTCCCAAACGTGGTCTTACACGTA
* ** ** *
25275942 ATTCAATATCAATGCCTCTGTCCCAAACAAGCTCTTACACG-A
1 AATCAATATCAATGCCGATGTCCCAAACGTGGTCTTACACGTA
* *
25275984 AATCAGATAT-GATGCCGATGTCCCAAACGTGGTCTTATACGTA
1 AATCA-ATATCAATGCCGATGTCCCAAACGTGGTCTTACACGTA
25276027 AATC
1 AATC
25276031 TCAATCGAGG
Statistics
Matches: 69, Mismatches: 17, Indels: 6
0.75 0.18 0.07
Matches are distributed among these distances:
42 31 0.45
43 38 0.55
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.26
Consensus pattern (43 bp):
AATCAATATCAATGCCGATGTCCCAAACGTGGTCTTACACGTA
Found at i:25280520 original size:23 final size:24
Alignment explanation
Indices: 25280480--25280569 Score: 109
Period size: 22 Copynumber: 3.9 Consensus size: 24
25280470 AAGCTTTTCA
25280480 TGAGCTGATAAACAGTAAGCTCTAT
1 TGAGCTGA-AAACAGTAAGCTCTAT
*
25280505 TGAG-TGAAAACTGTAAGCTCTAT
1 TGAGCTGAAAACAGTAAGCTCTAT
* *
25280528 TGAGCTG--AACAGTAAGCTCCAA
1 TGAGCTGAAAACAGTAAGCTCTAT
25280550 TGAGCTG--AACAGTAAGCTCT
1 TGAGCTGAAAACAGTAAGCTCT
25280570 TACGAGCTAT
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
22 31 0.53
23 19 0.32
24 5 0.08
25 4 0.07
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (24 bp):
TGAGCTGAAAACAGTAAGCTCTAT
Found at i:25280576 original size:22 final size:22
Alignment explanation
Indices: 25280529--25280577 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
25280519 AAGCTCTATT
*
25280529 GAGCTGAACAGTAAGCTCCAAT
1 GAGCTGAACAGTAAGCTCCAAC
**
25280551 GAGCTGAACAGTAAGCTCTTAC
1 GAGCTGAACAGTAAGCTCCAAC
25280573 GAGCT
1 GAGCT
25280578 ATGGTGAGTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.33, C:0.22, G:0.24, T:0.20
Consensus pattern (22 bp):
GAGCTGAACAGTAAGCTCCAAC
Found at i:25290877 original size:29 final size:29
Alignment explanation
Indices: 25290834--25290950 Score: 157
Period size: 29 Copynumber: 4.1 Consensus size: 29
25290824 CATGATTATG
* *
25290834 AATGTGA-CTGGGCCTAACGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
25290862 AATGTGATTTGGGCCTAATGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
* * *
25290891 CAGGTGATTTGGACCTAATGGGCCATATA
1 AATGTGATTTGGGCCTAATGGGCCATATA
*
25290920 CAA-GTGATTTGGGCCTAATGGGCCAGATA
1 -AATGTGATTTGGGCCTAATGGGCCATATA
25290949 AA
1 AA
25290951 GGTATGTGAA
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
28 9 0.11
29 69 0.87
30 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (29 bp):
AATGTGATTTGGGCCTAATGGGCCATATA
Found at i:25293348 original size:25 final size:24
Alignment explanation
Indices: 25293306--25293374 Score: 77
Period size: 24 Copynumber: 2.8 Consensus size: 24
25293296 ACATGGTCGA
*
25293306 TAAGCTCTTCATGAGCTGATAAA-TAG
1 TAAGCTC-TAATGAGCTGA-AAACT-G
25293332 TAAGCTCTAATGAGCTGAAAACTG
1 TAAGCTCTAATGAGCTGAAAACTG
* *
25293356 TAAGCACTATTGAGCTGAA
1 TAAGCTCTAATGAGCTGAA
25293375 CAATAAGCTC
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
24 21 0.54
25 11 0.28
26 7 0.18
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (24 bp):
TAAGCTCTAATGAGCTGAAAACTG
Found at i:25296691 original size:46 final size:48
Alignment explanation
Indices: 25296542--25296762 Score: 226
Period size: 46 Copynumber: 4.7 Consensus size: 48
25296532 ATTTGTGTGT
* * ** * *
25296542 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCAC-ATTATAA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCGA-GATGA
*
25296588 CAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT-GAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TTCGAGATGA
* * *
25296636 GAGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCTTCGAGACGTA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCGAGATG-A
* *
25296683 -AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCTACGAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCGAGATGA
* *
25296728 TAGTCAGTGTAAGACCATGTCTGGGACATGGCATC
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC
25296763 AGCACCTTAC
Statistics
Matches: 148, Mismatches: 18, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
45 3 0.02
46 76 0.51
47 42 0.28
48 26 0.18
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTCGAGATGA
Found at i:25296755 original size:93 final size:95
Alignment explanation
Indices: 25296589--25296762 Score: 250
Period size: 93 Copynumber: 1.9 Consensus size: 95
25296579 ACATTATAAC
*
25296589 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATGAGAGCTAGTGTAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGAGAGCTAGTGTAAGACATG
25296654 TCTAGGACAT-GCATCGGCTTCGAGACGTA
66 TCTAGGACATGGCATCGGCTTCGAGACGTA
* *
25296683 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATTGGC-TACGAGATGATAG-TCAGTGTAAGACC
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-CGAGATGAGAGCT-AGTGTAAGA-C
*
25296744 ATGTCTGGGACATGGCATC
63 ATGTCTAGGACATGGCATC
25296763 AGCACCTTAC
Statistics
Matches: 72, Mismatches: 4, Indels: 8
0.86 0.05 0.10
Matches are distributed among these distances:
91 2 0.03
92 25 0.35
93 27 0.38
94 18 0.25
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (95 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCGAGATGAGAGCTAGTGTAAGACATG
TCTAGGACATGGCATCGGCTTCGAGACGTA
Found at i:25304325 original size:46 final size:46
Alignment explanation
Indices: 25304167--25304388 Score: 216
Period size: 46 Copynumber: 4.7 Consensus size: 46
25304157 ATTTGTGTGT
* * * * *
25304167 GAGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCAC-ATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGA-GACGA
* ** **
25304213 GAGCCAGTGTAAGACCATGTCTGGGACATGGCCTCGGTATTTAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGA
* *
25304261 GAGCTAGTGTAAGGCATGTCTGGGACATGCATCGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACG-A
* *
25304308 -AGCCAGTGTAAGACATGTCTGGGACATGTATCGG-CTGCGAGATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGA
* *
25304353 TAGTCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
25304389 ACTTGAGATA
Statistics
Matches: 146, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
45 3 0.02
46 74 0.51
47 43 0.29
48 25 0.17
49 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGA
Found at i:25304397 original size:47 final size:48
Alignment explanation
Indices: 25304217--25304434 Score: 190
Period size: 47 Copynumber: 4.6 Consensus size: 48
25304207 TTATGAGAGC
* ** *
25304217 CAGTGTAAGACCATGTCTGGGACATGGCCTCGGTA-TTTAGACGA-GAG
1 CAGTGTAAGACCATGTCTGGGACATGGCATCGG-ACTCGAGACGATAAG
* *
25304264 CTAGTGTAAG-GCATGTCTGGGACAT-GCATCGGCCTCGAGACG-TAAG
1 C-AGTGTAAGACCATGTCTGGGACATGGCATCGGACTCGAGACGATAAG
* *
25304310 CCAGTGTAAGA-CATGTCTGGGACAT-GTATCGG-CTGCGAGATGAT-AG
1 -CAGTGTAAGACCATGTCTGGGACATGGCATCGGACT-CGAGACGATAAG
* * *
25304356 TCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGA-TATGAG
1 -CAGTGTAAGACCATGTCTGGGACATGGCATCGGACTCGAGACGATAAG
25304403 CTAGTGTAAGACCATGTCTAGGG-CATGGCATC
1 C-AGTGTAAGACCATGTCT-GGGACATGGCATC
25304435 AGCACCTTAC
Statistics
Matches: 146, Mismatches: 12, Indels: 26
0.79 0.07 0.14
Matches are distributed among these distances:
45 2 0.01
46 63 0.43
47 64 0.44
48 17 0.12
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (48 bp):
CAGTGTAAGACCATGTCTGGGACATGGCATCGGACTCGAGACGATAAG
Found at i:25306418 original size:15 final size:15
Alignment explanation
Indices: 25306398--25306427 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
25306388 GTGGTAAATG
25306398 ATGGTCGAAACCATC
1 ATGGTCGAAACCATC
25306413 ATGGTCGAAACCATC
1 ATGGTCGAAACCATC
25306428 CCTTTTCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (15 bp):
ATGGTCGAAACCATC
Found at i:25306574 original size:33 final size:33
Alignment explanation
Indices: 25306553--25306643 Score: 155
Period size: 33 Copynumber: 2.8 Consensus size: 33
25306543 TTACGCTCAT
*
25306553 AATGCCATAACCCGGTTATGGTATTCTCATTAG
1 AATGCCATAACCCGGTTATGGTCTTCTCATTAG
25306586 AATGCCATAACCCGGTTATGGTCTTCTCATTAG
1 AATGCCATAACCCGGTTATGGTCTTCTCATTAG
* *
25306619 AATGCCATAACCCAGCTATGGTCTT
1 AATGCCATAACCCGGTTATGGTCTT
25306644 ACATATATAT
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (33 bp):
AATGCCATAACCCGGTTATGGTCTTCTCATTAG
Found at i:25310450 original size:29 final size:29
Alignment explanation
Indices: 25310417--25310474 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
25310407 GTTTACAAAG
*
25310417 CCGAAACTATACTTTTAAGATGAAAATTT
1 CCGAAACTATACGTTTAAGATGAAAATTT
25310446 CCGAAACTATACGTTTAAGATGAAAATTT
1 CCGAAACTATACGTTTAAGATGAAAATTT
25310475 TTACTTTCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (29 bp):
CCGAAACTATACGTTTAAGATGAAAATTT
Found at i:25315256 original size:17 final size:16
Alignment explanation
Indices: 25315230--25315282 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
25315220 AATATATAAA
*
25315230 AAATTCAAAAAAGTAC
1 AAATTTAAAAAAGTAC
**
25315246 ACAATTTAAAAAAAGTTT
1 A-AATTT-AAAAAAGTAC
*
25315264 AAATTTAAAAAATTAC
1 AAATTTAAAAAAGTAC
25315280 AAA
1 AAA
25315283 AACCTCAAAG
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
16 11 0.38
17 9 0.31
18 9 0.31
ACGTcount: A:0.62, C:0.08, G:0.04, T:0.26
Consensus pattern (16 bp):
AAATTTAAAAAAGTAC
Found at i:25315259 original size:18 final size:17
Alignment explanation
Indices: 25315236--25315275 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
25315226 TAAAAAATTC
25315236 AAAAAAGTACACAATTTA
1 AAAAAAGTACA-AATTTA
**
25315254 AAAAAAGTTTAAATTTA
1 AAAAAAGTACAAATTTA
25315271 AAAAA
1 AAAAA
25315276 TTACAAAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.25
Consensus pattern (17 bp):
AAAAAAGTACAAATTTA
Found at i:25317013 original size:2 final size:2
Alignment explanation
Indices: 25317006--25317031 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
25316996 CGATTATGCG
25317006 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
25317032 TATATATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:25318376 original size:43 final size:43
Alignment explanation
Indices: 25318329--25318567 Score: 302
Period size: 43 Copynumber: 5.6 Consensus size: 43
25318319 ATCCAAGATG
* *
25318329 TGGTCTTACATGTAATCACATATCGATGCCATTGTCCCAGACA
1 TGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGACA
* * * *
25318372 TGGTCTTACATG-AATCAAATA-CGATGCCGATGTCCCAAACA
1 TGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGACA
*
25318413 TGGTCTTACACGTAATCACATATCGATGCCATTGTCCCAGACA
1 TGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGACA
* * * * * *
25318456 GGGTCTTACATGTAATCACACATCGATGCCAACGTCACAGACG
1 TGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGACA
* * *
25318499 TGGTCTTACACGTAATCACATATCGATGCTAACGTCCCAGACC
1 TGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGACA
* *
25318542 TGGTCTTACACGAAAACACATATCGA
1 TGGTCTTACACGTAATCACATATCGA
25318568 AAATCCTATG
Statistics
Matches: 170, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
41 28 0.16
42 16 0.09
43 126 0.74
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (43 bp):
TGGTCTTACACGTAATCACATATCGATGCCAATGTCCCAGACA
Found at i:25318538 original size:86 final size:83
Alignment explanation
Indices: 25318306--25318551 Score: 314
Period size: 84 Copynumber: 2.9 Consensus size: 83
25318296 CACACATATC
* * * *
25318306 ATACAATGCCAACATCCAAGATGTGGTCTTACATGTAATCACATATCGATGCCATTGTCCCAGAC
1 ATACGATGCCAACGTCC-AGACGTGGTCTTACACGTAATCACATATCGATGCCATTGTCCCAGAC
25318371 ATGGTCTTACATGAATCAA
65 ATGGTCTTACATGAATCAA
* * * *
25318390 ATACGATGCCGATGTCCCAAACATGGTCTTACACGTAATCACATATCGATGCCATTGTCCCAGAC
1 ATACGATGCCAACGT-CCAGACGTGGTCTTACACGTAATCACATATCGATGCCATTGTCCCAGAC
*
25318455 AGGGTCTTACATGTAATCACA
65 ATGGTCTTACATG-AATCA-A
* **
25318476 CAT-CGATGCCAACGTCACAGACGTGGTCTTACACGTAATCACATATCGATGCTAACGTCCCAGA
1 -ATACGATGCCAACGTC-CAGACGTGGTCTTACACGTAATCACATATCGATGCCATTGTCCCAGA
*
25318540 CCTGGTCTTACA
64 CATGGTCTTACA
25318552 CGAAAACACA
Statistics
Matches: 139, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
84 66 0.47
85 8 0.06
86 63 0.45
87 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (83 bp):
ATACGATGCCAACGTCCAGACGTGGTCTTACACGTAATCACATATCGATGCCATTGTCCCAGACA
TGGTCTTACATGAATCAA
Found at i:25321192 original size:34 final size:34
Alignment explanation
Indices: 25321141--25321232 Score: 98
Period size: 34 Copynumber: 2.7 Consensus size: 34
25321131 CAGTGTCGTA
*
25321141 CAGTGTAGGCC-CAAGCCCATATCAGTAGCAATAT
1 CAGTGTGGGCCTC-AGCCCATATCAGTAGCAATAT
* * * *
25321175 TAGTGTGGGCTTTAGCCCAT-TACAGTAGCAGTAT
1 CAGTGTGGGCCTCAGCCCATAT-CAGTAGCAATAT
*
25321209 CAGTGTGGGCCTCAGCCCAAATCA
1 CAGTGTGGGCCTCAGCCCATATCA
25321233 ATAAGTTTCA
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
33 1 0.02
34 44 0.96
35 1 0.02
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (34 bp):
CAGTGTGGGCCTCAGCCCATATCAGTAGCAATAT
Found at i:25324392 original size:34 final size:34
Alignment explanation
Indices: 25324339--25324406 Score: 109
Period size: 34 Copynumber: 2.0 Consensus size: 34
25324329 AGTTTTTGCA
*
25324339 GTGAGTAATCTGTATGAACAGGAATGAAATGGGT
1 GTGAGTAATCTGTACGAACAGGAATGAAATGGGT
* *
25324373 GTGAGTAATTTGTACGAACAGGTATGAAATGGGT
1 GTGAGTAATCTGTACGAACAGGAATGAAATGGGT
25324407 AGACTTGGTC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.34, C:0.06, G:0.32, T:0.28
Consensus pattern (34 bp):
GTGAGTAATCTGTACGAACAGGAATGAAATGGGT
Found at i:25327168 original size:18 final size:18
Alignment explanation
Indices: 25327145--25327180 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
25327135 CGTCTAGTGG
25327145 GGATAAAATCGACCCACC
1 GGATAAAATCGACCCACC
25327163 GGATAAAATCGACCCACC
1 GGATAAAATCGACCCACC
25327181 CATCCCTACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.33, G:0.17, T:0.11
Consensus pattern (18 bp):
GGATAAAATCGACCCACC
Found at i:25332604 original size:12 final size:12
Alignment explanation
Indices: 25332587--25332613 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
25332577 CACATGCCCA
25332587 TGTACCAGGCCG
1 TGTACCAGGCCG
25332599 TGTACCAGGCCG
1 TGTACCAGGCCG
25332611 TGT
1 TGT
25332614 GCTAGGCTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.30, G:0.33, T:0.22
Consensus pattern (12 bp):
TGTACCAGGCCG
Found at i:25339344 original size:26 final size:26
Alignment explanation
Indices: 25339275--25339437 Score: 208
Period size: 26 Copynumber: 6.3 Consensus size: 26
25339265 CTGGAGGCCT
* *
25339275 AGCCTCTTTT-AAT-AACTGGGGTAAA
1 AGCC-CTTTTCAATAAACTGGGGCATA
*
25339300 AGCCC-TTTCGAA-AATCTGGGGCATA
1 AGCCCTTTTC-AATAAACTGGGGCATA
25339325 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
** *
25339351 AGCCCTTTTCGGTAAACTGGGTCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
25339377 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
**
25339403 AGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATA
25339429 AGCCCTTTT
1 AGCCCTTTT
25339438 GCACTTCCTC
Statistics
Matches: 121, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
23 3 0.02
24 1 0.01
25 22 0.18
26 95 0.79
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
AGCCCTTTTCAATAAACTGGGGCATA
Found at i:25339379 original size:52 final size:52
Alignment explanation
Indices: 25339275--25339437 Score: 244
Period size: 52 Copynumber: 3.2 Consensus size: 52
25339265 CTGGAGGCCT
* * *
25339275 AGCCTCTTTT-AAT-AACTGGGGTAAAAGCCC-TTTC-GAAAATCTGGGGCATA
1 AGCC-CTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAA-CTGGGGCATA
*
25339325 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGTCATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
25339377 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
25339429 AGCCCTTTT
1 AGCCCTTTT
25339438 GCACTTCCTC
Statistics
Matches: 104, Mismatches: 5, Indels: 6
0.90 0.04 0.05
Matches are distributed among these distances:
49 5 0.05
50 7 0.07
51 15 0.14
52 73 0.70
53 4 0.04
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (52 bp):
AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATA
Found at i:25339508 original size:20 final size:20
Alignment explanation
Indices: 25339483--25339557 Score: 111
Period size: 20 Copynumber: 3.9 Consensus size: 20
25339473 GCATGAATAC
*
25339483 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
25339503 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
25339523 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
25339543 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
25339558 TCCCACGTAT
Statistics
Matches: 53, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
18 8 0.15
20 43 0.81
21 2 0.04
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:25339514 original size:11 final size:11
Alignment explanation
Indices: 25339483--25339538 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
25339473 GCATGAATAC
25339483 ATCATGTGCAT
1 ATCATGTGCAT
* *
25339494 TTCA--TACAT
1 ATCATGTGCAT
25339503 ATCATGTGCAT
1 ATCATGTGCAT
*
25339514 ATCA--TACAT
1 ATCATGTGCAT
25339523 ATCATGTGCAT
1 ATCATGTGCAT
25339534 ATCAT
1 ATCAT
25339539 ATCAATCATG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.11, T:0.38
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:25339555 original size:9 final size:10
Alignment explanation
Indices: 25339500--25339556 Score: 57
Period size: 9 Copynumber: 5.8 Consensus size: 10
25339490 GCATTTCATA
25339500 CATATCATGT
1 CATATCATGT
*
25339510 GCATATCAT-A
1 -CATATCATGT
25339520 CATATCATGT
1 CATATCATGT
*
25339530 GCATATCATAT
1 -CATATCATGT
25339541 CA-ATCATGT
1 CATATCATGT
25339550 -ATATCAT
1 CATATCAT
25339557 ATCCCACGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 19 0.49
10 2 0.05
11 17 0.44
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (10 bp):
CATATCATGT
Found at i:25341285 original size:20 final size:21
Alignment explanation
Indices: 25341256--25341295 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
25341246 TGGGCCTGAA
25341256 AGCCCATTGA-GCCCAACTTC
1 AGCCCATTGAGGCCCAACTTC
*
25341276 AGCCCCTTGAGGCCCAACTT
1 AGCCCATTGAGGCCCAACTT
25341296 ACTGTAATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.23, C:0.40, G:0.17, T:0.20
Consensus pattern (21 bp):
AGCCCATTGAGGCCCAACTTC
Found at i:25352986 original size:40 final size:40
Alignment explanation
Indices: 25352843--25352971 Score: 170
Period size: 40 Copynumber: 3.2 Consensus size: 40
25352833 CTCATTCAAT
* * * * *
25352843 GCCTTCGGGACTTAACCCGGATTTTA-AAACTCGCACGAAT
1 GCCTTCGGGACTTAACCCGGA-ATTAGTATCTCGCACAAAG
* *
25352883 GCCTTTCGGGACTTAAACCGGAATTGGTATCTCGCACAAAG
1 GCC-TTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
25352924 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
1 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
25352964 GCCTTCGG
1 GCCTTCGG
25352972 ATCTTAGTCC
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
40 48 0.62
41 30 0.38
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
Found at i:25353016 original size:38 final size:39
Alignment explanation
Indices: 25352887--25353021 Score: 136
Period size: 40 Copynumber: 3.4 Consensus size: 39
25352877 ACGAATGCCT
* * *
25352887 TTCGGGACTTAAACCGGAATTGGTATCTCGCACAAAGGCC
1 TTCGGGACTT-AGCCGGAATTAGTATCTAGCACAAAGGCC
* *
25352927 TTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCC
1 TTCGGGACTT-AGCCGGAATTAGTATCTAGCACAAAGGCC
25352967 TTC-GGATCTTAGTCCGGAA-TAGTCA-CTTAGCAC-AA-GCC
1 TTCGGGA-CTTAG-CCGGAATTAGT-ATC-TAGCACAAAGGCC
25353005 TTCGGGACTTAGCCGGA
1 TTCGGGACTTAGCCGGA
25353022 CAGCATTCAA
Statistics
Matches: 86, Mismatches: 4, Indels: 13
0.83 0.04 0.13
Matches are distributed among these distances:
37 5 0.06
38 11 0.13
39 14 0.16
40 56 0.65
ACGTcount: A:0.26, C:0.26, G:0.24, T:0.24
Consensus pattern (39 bp):
TTCGGGACTTAGCCGGAATTAGTATCTAGCACAAAGGCC
Found at i:25360681 original size:79 final size:80
Alignment explanation
Indices: 25360582--25360802 Score: 202
Period size: 80 Copynumber: 2.8 Consensus size: 80
25360572 CTCGTTCAAG
* * ** * *
25360582 TGCCTTCGGGACATAGCCCGGTCA-TAGTAACTCATTC-AATGCCTTCGGGACTTAACCCGGATT
1 TGCCTTCGGGACATAACCCGG-AATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGA-A
*
25360645 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * *
25360661 TGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAATT
1 TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
25360726 AATAACTCGCACAAA
66 AATAACTCGCACAAA
* * ** * * *
25360741 TACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGAAT-TAGTAACTCA-CACAAAGGCCTTCGGGACTTAACCCGGA
25360803 CAGCATTCAA
Statistics
Matches: 118, Mismatches: 18, Indels: 11
0.80 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 37 0.31
80 74 0.63
81 6 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGAATTAGTAACTCACACAAAGGCCTTCGGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:25360733 original size:80 final size:80
Alignment explanation
Indices: 25360622--25360802 Score: 219
Period size: 80 Copynumber: 2.3 Consensus size: 80
25360612 CTCATTCAAT
* * *
25360622 GCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCGGA-AT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTC-GGATCTTAACCCGGATA-
*
25360685 TAGT-A-TCTCGCACAAA
64 TAGTCACT-TAGCACAAA
**
25360701 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTCGGATCTTAGTCCGGATA
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGATCTTAACCCGGATA
25360765 TAGTCACTTAGCACAAA
64 TAGTCACTTAGCACAAA
*
25360782 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
25360803 CAGCATTCAA
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 7 0.08
80 71 0.80
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGATCTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:25360762 original size:40 final size:40
Alignment explanation
Indices: 25360619--25360802 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
25360609 TAACTCATTC
* *
25360619 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
25360659 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
25360699 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
* ** * * *
25360739 AATACCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
25360780 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
25360803 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 16, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
39 8 0.07
40 103 0.84
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:25364509 original size:39 final size:40
Alignment explanation
Indices: 25364410--25364632 Score: 219
Period size: 40 Copynumber: 5.6 Consensus size: 40
25364400 TGAATGATGT
* * *
25364410 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATA
* * * *
25364449 TCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAATT
1 -CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
25364490 TCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAA-A
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
* *
25364528 TCTGGGTTAAGTCCCGAAGGCA-TTGTGCGAGTTACTAA-A
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
*
25364567 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-A
*
25364608 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
25364633 AACGAGGAGC
Statistics
Matches: 154, Mismatches: 20, Indels: 18
0.80 0.10 0.09
Matches are distributed among these distances:
39 68 0.44
40 75 0.49
41 11 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATA
Found at i:25364583 original size:79 final size:78
Alignment explanation
Indices: 25364409--25364630 Score: 234
Period size: 79 Copynumber: 2.8 Consensus size: 78
25364399 TTGAATGATG
* * * * * * *
25364409 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CTGAAGGCAT
1 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCA-
*
25364472 TTGTGCGAGATACTAAT
62 TTGTGCGAGATACTAAA
* * *
25364489 TTCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTA-AATCTGGGTTAAGTCCCGAAGGCATTG
1 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATTG
*
25364553 TGCGAGTTACTAAA
65 TGCGAGATACTAAA
* * *
25364567 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATT
25364631 TGAACGAGGA
Statistics
Matches: 119, Mismatches: 18, Indels: 11
0.80 0.12 0.07
Matches are distributed among these distances:
78 26 0.22
79 75 0.63
80 18 0.15
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (78 bp):
TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTGT
GCGAGATACTAAA
Found at i:25364646 original size:40 final size:40
Alignment explanation
Indices: 25364491--25364651 Score: 127
Period size: 40 Copynumber: 4.1 Consensus size: 40
25364481 ATACTAATTT
* ** *
25364491 CGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATC
1 CGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAA-C
* * *
25364530 TGGGTTAAGTCCCGAAGGCATTGTG--CGAGTTACTA-AATC
1 CGGGCTAAGTCCCGAAGGCATT-TGAACGAGTGACTATAA-C
* ** *
25364569 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAAC
* *
25364609 CGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTATAAC
25364649 CGG
1 CGG
25364652 TTAAATTCCG
Statistics
Matches: 106, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
38 2 0.02
39 43 0.41
40 58 0.55
41 3 0.03
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAAC
Found at i:25364663 original size:79 final size:79
Alignment explanation
Indices: 25364464--25364665 Score: 200
Period size: 79 Copynumber: 2.6 Consensus size: 79
25364454 ACTAAGATCT
* * * *
25364464 GAAGGCATTTGTGCGAGAT-ACTAATTTCGGGCT-AAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 GAAGGCA-TTGTGCGAG-TGACTAAATCCGGGTTAAATCCCGAAGGCATTGGTGCGAGTTACTAA
* *
25364527 ATCTGGGTTAAGTCCC
64 ATCCGGGCTAAGTCCC
* * *
25364543 GAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 GAAGGCATTGTGCGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTGGTGCGAGTTACTA-AA
*
25364608 -CCGGGCTATGTCCC
65 TCCGGGCTAAGTCCC
* *
25364622 GAAGGCATT-TGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 GAAGGCATTGTG--CGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
25364666 TACGTGATTT
Statistics
Matches: 104, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
77 1 0.01
78 22 0.21
79 68 0.65
80 13 0.12
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (79 bp):
GAAGGCATTGTGCGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTGGTGCGAGTTACTAAAT
CCGGGCTAAGTCCC
Found at i:25368033 original size:25 final size:26
Alignment explanation
Indices: 25368005--25368057 Score: 99
Period size: 25 Copynumber: 2.1 Consensus size: 26
25367995 GCCTGGCCTC
25368005 TTTTAATAACTGGGGCA-AAGCCCTT
1 TTTTAATAACTGGGGCATAAGCCCTT
25368030 TTTTAATAACTGGGGCATAAGCCCTT
1 TTTTAATAACTGGGGCATAAGCCCTT
25368056 TT
1 TT
25368058 GCACTTCCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 17 0.63
26 10 0.37
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (26 bp):
TTTTAATAACTGGGGCATAAGCCCTT
Found at i:25368129 original size:9 final size:9
Alignment explanation
Indices: 25368115--25368171 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
25368105 ATCTCGTGTG
25368115 CATATCATA
1 CATATCATA
*
25368124 CATATCATGTG
1 CATATCA--TA
25368135 CATATCATA
1 CATATCATA
* *
25368144 CATGTCATGTG
1 CATATCA--TA
25368155 CATATCATA
1 CATATCATA
25368164 CATATCAT
1 CATATCAT
25368172 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:25368134 original size:20 final size:20
Alignment explanation
Indices: 25368111--25368173 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
25368101 GAACATCTCG
25368111 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
*
25368131 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
25368151 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
25368171 TGT
1 TGT
25368174 TTATCAAAAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:25368238 original size:25 final size:25
Alignment explanation
Indices: 25368210--25368257 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
25368200 ATATATAAAC
* *
25368210 CCTAGGCGTATAATGGTCATTTTTA
1 CCTAGGCGCAAAATGGTCATTTTTA
*
25368235 CCTAGGGGCAAAATGGTCATTTT
1 CCTAGGCGCAAAATGGTCATTTT
25368258 CATATTACCA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (25 bp):
CCTAGGCGCAAAATGGTCATTTTTA
Found at i:25375797 original size:30 final size:31
Alignment explanation
Indices: 25375741--25375803 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
25375731 CCTTTTCATA
25375741 TTTCATAATTCATAACACTGGGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
* **
25375772 TTTCATATTTCATATTACT-GGCCGAAGCCT
1 TTTCATAATTCATAACACTGGGCCGAAGCCT
25375802 TT
1 TT
25375804 ACTGTAACGG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 13 0.45
31 16 0.55
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (31 bp):
TTTCATAATTCATAACACTGGGCCGAAGCCT
Found at i:25376074 original size:23 final size:23
Alignment explanation
Indices: 25376016--25376109 Score: 156
Period size: 22 Copynumber: 4.1 Consensus size: 23
25376006 CCTAGCCTCT
*
25376016 TTTAATAACTGGGGCA-AAGCCT
1 TTTAATAACTGGGGCATAAGCCC
25376038 TTTAATAACT-GGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
25376060 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
25376083 TTTTAATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
25376107 TTT
1 TTT
25376110 TGCACTTCCT
Statistics
Matches: 68, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
21 5 0.07
22 25 0.37
23 15 0.22
24 23 0.34
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:25376092 original size:24 final size:24
Alignment explanation
Indices: 25375995--25376110 Score: 170
Period size: 24 Copynumber: 5.0 Consensus size: 24
25375985 GCTTTATCAT
*
25375995 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
25376020 ATAACTGGGGCA-AAG-CCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
25376042 ATAACT-GGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
25376064 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
25376088 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
25376111 GCACTTCCTC
Statistics
Matches: 85, Mismatches: 1, Indels: 11
0.88 0.01 0.11
Matches are distributed among these distances:
21 5 0.06
22 25 0.29
23 15 0.18
24 32 0.38
25 8 0.09
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:25376186 original size:20 final size:20
Alignment explanation
Indices: 25376163--25376205 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
25376153 GAACATCTCG
*
25376163 TGTGCATATCATACATGTCA
1 TGTGCATATCATACATATCA
25376183 TGTGCATATCATACATATCA
1 TGTGCATATCATACATATCA
25376203 TGT
1 TGT
25376206 TTATCAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (20 bp):
TGTGCATATCATACATATCA
Found at i:25376283 original size:24 final size:24
Alignment explanation
Indices: 25376242--25376289 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
25376232 ATATATAAAC
* * *
25376242 CCTAGGGGTATAATGGTCATTTTA
1 CCTAGGGGCAAAACGGTCATTTTA
25376266 CCTAGGGGCAAAACGGTCATTTTA
1 CCTAGGGGCAAAACGGTCATTTTA
25376290 TATTATAAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (24 bp):
CCTAGGGGCAAAACGGTCATTTTA
Found at i:25384610 original size:12 final size:13
Alignment explanation
Indices: 25384593--25384630 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
25384583 ATCCTAAAAT
25384593 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
25384605 ATTAAGAACACATA
1 ATTAAGAACA-AGA
25384619 ATTAAGAACAAG
1 ATTAAGAACAAG
25384631 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:25387350 original size:25 final size:25
Alignment explanation
Indices: 25387321--25387368 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
25387311 TTATAATATG
* * *
25387321 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
25387346 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
25387369 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:25387419 original size:9 final size:9
Alignment explanation
Indices: 25387407--25387463 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
25387397 TTTGATAAAC
25387407 ATGATATGT
1 ATGATATGT
*
25387416 ATGATATGCAC
1 ATGATATG--T
*
25387427 ATGACATGT
1 ATGATATGT
*
25387436 ATGATATGCAC
1 ATGATATG--T
25387447 ATGATATGT
1 ATGATATGT
25387456 ATGATATG
1 ATGATATG
25387464 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:25387430 original size:20 final size:20
Alignment explanation
Indices: 25387405--25387467 Score: 117
Period size: 20 Copynumber: 3.1 Consensus size: 20
25387395 ATTTTGATAA
25387405 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
25387425 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
25387445 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
25387465 ACA
1 ACA
25387468 CGAGATGTTC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:25387600 original size:23 final size:24
Alignment explanation
Indices: 25387521--25387664 Score: 213
Period size: 24 Copynumber: 6.0 Consensus size: 24
25387511 GAGGAAGTGC
*
25387521 AAAAGGACTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
25387545 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
25387569 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
25387593 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
25387616 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
25387641 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
25387665 ATGATAAAGC
Statistics
Matches: 112, Mismatches: 2, Indels: 11
0.90 0.02 0.09
Matches are distributed among these distances:
23 29 0.26
24 53 0.47
25 21 0.19
26 9 0.08
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:25390692 original size:38 final size:38
Alignment explanation
Indices: 25390650--25390724 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
25390640 TAAAGACCCG
*
25390650 CAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCA
1 CAGGCTTCGTGCTGGTAAAATATCCGGGATAAATCCCA
**
25390688 CAGGCTTCGTGCTGGTATTATATCCGGGATAAATCCC
1 CAGGCTTCGTGCTGGTAAAATATCCGGGATAAATCCC
25390725 GTAGGCCTAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.24, C:0.24, G:0.24, T:0.28
Consensus pattern (38 bp):
CAGGCTTCGTGCTGGTAAAATATCCGGGATAAATCCCA
Found at i:25390738 original size:38 final size:38
Alignment explanation
Indices: 25390658--25390753 Score: 102
Period size: 38 Copynumber: 2.5 Consensus size: 38
25390648 CGCAGGCTTC
** * * *
25390658 GTGCTGGTAAAATATCCGGGTTAAATCCCACAGGCTTC
1 GTGCTGGTATTATATCCGGGATAAATCCCACAGGCCTA
**
25390696 GTGCTGGTATTATATCCGGGATAAATCCCGTAGGCCTA
1 GTGCTGGTATTATATCCGGGATAAATCCCACAGGCCTA
** *
25390734 GTGCTAATATTATATTCGGG
1 GTGCTGGTATTATATCCGGG
25390754 CCTTCGGGCC
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 48 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (38 bp):
GTGCTGGTATTATATCCGGGATAAATCCCACAGGCCTA
Found at i:25390815 original size:43 final size:43
Alignment explanation
Indices: 25390746--25390866 Score: 161
Period size: 43 Copynumber: 2.8 Consensus size: 43
25390736 GCTAATATTA
* ** *
25390746 TATTCGGGCCTTCGGGCCTAGAAGGCTTCGTGCCGGTGATGTG
1 TATTCGAGCCTTCGTACCTAGCAGGCTTCGTGCCGGTGATGTG
*
25390789 TATTCGAGCCTTCGTACGTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGAGCCTTCGTACCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
25390832 TATTTGGGCCTTCGTGCCTAGCAGGCCTTCGTGCC
1 TATTCGAGCCTTCGTACCTAGCAGG-CTTCGTGCC
25390867 TAGCAGGCTT
Statistics
Matches: 68, Mismatches: 9, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
43 59 0.87
44 9 0.13
ACGTcount: A:0.12, C:0.26, G:0.33, T:0.30
Consensus pattern (43 bp):
TATTCGAGCCTTCGTACCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:25390872 original size:60 final size:60
Alignment explanation
Indices: 25390796--25390917 Score: 217
Period size: 60 Copynumber: 2.0 Consensus size: 60
25390786 GTGTATTCGA
* *
25390796 GCCTTCGTACGTAGCAGGCTTCGTGCCGGTGATGTGTATTTGGGCCTTCGTGCCTAGCAG
1 GCCTTCGTACCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAG
*
25390856 GCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAG
1 GCCTTCGTACCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAG
25390916 GC
1 GC
25390918 GTAATGCCGG
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.11, C:0.27, G:0.34, T:0.29
Consensus pattern (60 bp):
GCCTTCGTACCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAG
Found at i:25390879 original size:16 final size:17
Alignment explanation
Indices: 25390838--25390882 Score: 83
Period size: 17 Copynumber: 2.7 Consensus size: 17
25390828 TGTGTATTTG
25390838 GGCCTTCGTGCCTAGCA
1 GGCCTTCGTGCCTAGCA
25390855 GGCCTTCGTGCCTAGCA
1 GGCCTTCGTGCCTAGCA
25390872 GG-CTTCGTGCC
1 GGCCTTCGTGCC
25390883 GGTGATGTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
16 9 0.32
17 19 0.68
ACGTcount: A:0.09, C:0.36, G:0.31, T:0.24
Consensus pattern (17 bp):
GGCCTTCGTGCCTAGCA
Found at i:25401570 original size:12 final size:13
Alignment explanation
Indices: 25401553--25401590 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
25401543 ATCCTGGAAT
25401553 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
25401565 ATTAAGAACACAAA
1 ATTAAGAACA-AGA
25401579 ATTAAGAACAAG
1 ATTAAGAACAAG
25401591 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.61, C:0.11, G:0.13, T:0.16
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:25401581 original size:14 final size:15
Alignment explanation
Indices: 25401559--25401588 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
25401549 GAATATTAAG
25401559 ACAAGAATTAAGAAC
1 ACAAGAATTAAGAAC
25401574 ACAA-AATTAAGAAC
1 ACAAGAATTAAGAAC
25401588 A
1 A
25401589 AGTCAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.63, C:0.13, G:0.10, T:0.13
Consensus pattern (15 bp):
ACAAGAATTAAGAAC
Found at i:25411436 original size:261 final size:261
Alignment explanation
Indices: 25410972--25411494 Score: 913
Period size: 261 Copynumber: 2.0 Consensus size: 261
25410962 GATAAACCGT
*
25410972 AATTTATACATATTTTTATCTCATGCTTAGCACATTTATGGATGATTTCTCCTTAGATTTGGTGC
1 AATTTATACATATTTTTATCTCATGCTTAGCACATTTATGGATGATTTCTCCTTAGATTTGGTGA
25411037 ATTCGATGCTCCTAACCCTTTAATTTCATGTTTTATACTTAGGTGAGCATAGGACAGTAAAAAGA
66 ATTCGATGCTCCTAACCCTTTAATTTCATGTTTTATACTTAGGTGAGCATAGGACAGTAAAAAGA
* *
25411102 GCAAGAAACGGTCCAAAAATAGAGAAAATGGGTCAACATGGGAAATCAACACAGCCTGGGCTTCC
131 GCAAGAAACGGGCCAAAAATAGAGAAAATGGGCCAACATGGGAAATCAACACAGCCTGGGCTTCC
** *
25411167 TCACACGGGTAGACCACACGTTAGTGCCTATTTAACAGCCTTGACCACGATCTGAAGCAATCGCA
196 TCACACGGGTAGACCACACGCCAGTGCCTATTTAACAGCCTTGACCACGATCTGAAGCAATCACA
25411232 C
261 C
25411233 AATTTATACATATTTTTATCTCATGCTTAGCACATTTATGGATGATTTCTCCTTAGATTTGGTGA
1 AATTTATACATATTTTTATCTCATGCTTAGCACATTTATGGATGATTTCTCCTTAGATTTGGTGA
*
25411298 ATTCGATGCTCCTAACCCTTTAATTTCATGTTTTATACTTAGGTGAGCATAGGAGAGTAAAAAGA
66 ATTCGATGCTCCTAACCCTTTAATTTCATGTTTTATACTTAGGTGAGCATAGGACAGTAAAAAGA
* *
25411363 GCGAGAAACGGGCCAAAAA-AGAAGAAAATGGGCCAACATGGGAAATCAACACTGCCTGGGCTTC
131 GCAAGAAACGGGCCAAAAATAG-AGAAAATGGGCCAACATGGGAAATCAACACAGCCTGGGCTTC
* * * *
25411427 CTCACACGGGTAGACCATACGCCCGTGCCTATTTTACAGCCTTGACCACGGTCTGAAGCAATCAC
195 CTCACACGGGTAGACCACACGCCAGTGCCTATTTAACAGCCTTGACCACGATCTGAAGCAATCAC
25411492 AC
260 AC
25411494 A
1 A
25411495 CGGGCATGTC
Statistics
Matches: 248, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
260 2 0.01
261 246 0.99
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.28
Consensus pattern (261 bp):
AATTTATACATATTTTTATCTCATGCTTAGCACATTTATGGATGATTTCTCCTTAGATTTGGTGA
ATTCGATGCTCCTAACCCTTTAATTTCATGTTTTATACTTAGGTGAGCATAGGACAGTAAAAAGA
GCAAGAAACGGGCCAAAAATAGAGAAAATGGGCCAACATGGGAAATCAACACAGCCTGGGCTTCC
TCACACGGGTAGACCACACGCCAGTGCCTATTTAACAGCCTTGACCACGATCTGAAGCAATCACA
C
Found at i:25411897 original size:12 final size:13
Alignment explanation
Indices: 25411861--25411898 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
25411851 ATATATTTAA
25411861 CTTGTTCTTAATT
1 CTTGTTCTTAATT
*
25411874 ATGTGTTCTTAATT
1 CT-TGTTCTTAATT
25411888 CTTG-TCTTAAT
1 CTTGTTCTTAAT
25411899 ATTCTAGGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 7 0.32
13 3 0.14
14 12 0.55
ACGTcount: A:0.18, C:0.13, G:0.11, T:0.58
Consensus pattern (13 bp):
CTTGTTCTTAATT
Found at i:25413658 original size:17 final size:17
Alignment explanation
Indices: 25413636--25413697 Score: 52
Period size: 17 Copynumber: 3.4 Consensus size: 17
25413626 TGAATAATGA
25413636 ATGTATGAAATGATGTT
1 ATGTATGAAATGATGTT
* *
25413653 ATGTATGCTAAATGGTGATGA
1 ATGTATG--AAATGATG-T-T
* *
25413674 ATGTATGGAATGAGGTT
1 ATGTATGAAATGATGTT
25413691 ATGTATG
1 ATGTATG
25413698 CTAAATGGTT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
17 14 0.40
18 1 0.03
19 12 0.34
20 1 0.03
21 7 0.20
ACGTcount: A:0.32, C:0.02, G:0.29, T:0.37
Consensus pattern (17 bp):
ATGTATGAAATGATGTT
Found at i:25413686 original size:38 final size:38
Alignment explanation
Indices: 25413632--25413706 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 38
25413622 AGTTTGAATA
*
25413632 ATGAATGTATGAAATGATGTTATGTATGCTAAATGGTG
1 ATGAATGTATGAAATGAGGTTATGTATGCTAAATGGTG
*
25413670 ATGAATGTATGGAATGAGGTTATGTATGCTAAATGGT
1 ATGAATGTATGAAATGAGGTTATGTATGCTAAATGGT
25413707 TGTTTAAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.33, C:0.03, G:0.28, T:0.36
Consensus pattern (38 bp):
ATGAATGTATGAAATGAGGTTATGTATGCTAAATGGTG
Found at i:25417857 original size:40 final size:40
Alignment explanation
Indices: 25417715--25417844 Score: 174
Period size: 40 Copynumber: 3.3 Consensus size: 40
25417705 TAACTCATTC
* *
25417715 AATGCCTTC-GGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
** *
25417754 AATGCCTTCGGGACTTAACCCGGAATTGGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
25417794 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
25417834 AATACCTTCGG
1 AATGCCTTCGG
25417845 ATCTTAGTCC
Statistics
Matches: 78, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
39 11 0.14
40 67 0.86
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:25417857 original size:80 final size:80
Alignment explanation
Indices: 25417718--25417890 Score: 196
Period size: 80 Copynumber: 2.2 Consensus size: 80
25417708 CTCATTCAAT
* * *
25417718 GCCTTC-GGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGACTTAACCCGGA-ATT
1 GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATA-T
* *
25417781 GGT-A-TCTCGCACAAA
65 AGTCACT-TAGCACAAA
**
25417796 GGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATACCTTC-GGATCTTAGTCCGGAT
1 -GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATACCTTCGGGA-CTTAACCCGGAT
25417859 ATAGTCACTTAGCACAAA
63 ATAGTCACTTAGCACAAA
25417877 GCCTTCGGGACTTA
1 GCCTTCGGGACTTA
25417891 GCCGGACAGC
Statistics
Matches: 81, Mismatches: 7, Indels: 11
0.82 0.07 0.11
Matches are distributed among these distances:
79 13 0.16
80 57 0.70
81 10 0.12
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATACCTTCGGGACTTAACCCGGATATA
GTCACTTAGCACAAA
Found at i:25425492 original size:39 final size:39
Alignment explanation
Indices: 25425422--25425602 Score: 208
Period size: 39 Copynumber: 4.6 Consensus size: 39
25425412 GCTCCTCGTT
* *
25425422 CAAATGCCTTCGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATATAGTAACTCGCA
*
25425461 CAAATGCCTTCGGGACTTAACCCGGAT-TAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATATAGTAACTCGCA
* * *
25425500 CCAATGCCTTCGG-CTTAGCCCGAAT-TAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATATAGTAACTCGCA
* * * *
25425537 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATATAGTAAC-TCGCA
25425578 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
25425603 CATCATTCAA
Statistics
Matches: 121, Mismatches: 15, Indels: 11
0.82 0.10 0.07
Matches are distributed among these distances:
37 33 0.27
38 2 0.02
39 43 0.36
40 32 0.26
41 11 0.09
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:25432386 original size:46 final size:46
Alignment explanation
Indices: 25432292--25432506 Score: 179
Period size: 46 Copynumber: 4.6 Consensus size: 46
25432282 ATATCTGTGT
* * * *
25432292 CGATGCCATGTCCCAGACATGGTCTTATACTGAC-ACA-TCTCGTA-GC
1 CGATG-CATGTCCCAAACAT-GTCTTACACTGGCTTCAGTCTCG-AGGC
*
25432338 CGATGCATGTCCCAAACATGTCTTACACTGGCTTAAGTCTCGAGGC
1 CGATGCATGTCCCAAACATGTCTTACACTGGCTTCAGTCTCGAGGC
* * ** * * *
25432384 CGATGCATGTCCCAGACATGTCTTACACTAGCACCCGTCTCAATGC
1 CGATGCATGTCCCAAACATGTCTTACACTGGCTTCAGTCTCGAGGC
* * *
25432430 CAATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCA-TAAT-GTGGC
1 CGATG-CATGTCCCAAACAT-GTCTTACACTGGCT-TCAGT-CTCGAGGC
* *
25432478 CGATGCATGTCCTAGACATGTCTTACACT
1 CGATGCATGTCCCAAACATGTCTTACACT
25432507 AGCTCACACA
Statistics
Matches: 136, Mismatches: 26, Indels: 14
0.77 0.15 0.08
Matches are distributed among these distances:
44 11 0.08
45 15 0.11
46 64 0.47
47 25 0.18
48 19 0.14
49 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (46 bp):
CGATGCATGTCCCAAACATGTCTTACACTGGCTTCAGTCTCGAGGC
Found at i:25432456 original size:94 final size:92
Alignment explanation
Indices: 25432292--25432514 Score: 258
Period size: 94 Copynumber: 2.4 Consensus size: 92
25432282 ATATCTGTGT
* * *
25432292 CGATGCCATGTCCCAGACATGGTCTTATACT-G-ACACATCTCGTAGCCGATGCATGTCCCAAAC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCACACATCTCATAGCCAATGCATGTCCCAAAC
*
25432355 ATGTCTTACACTGGCT-TAAGT-CTCGAGGC
64 ATGTCTTACACTGGCTCTAA-TAAT-GAGGC
* *
25432384 CGATGCATGTCCCAGACATGTCTTACACTAGCACCCGTCTCA-ATGCCAATGCCATGTCCCAAAC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCATA-GCCAATG-CATGTCCCAAAC
* *
25432448 ATGGTCTTACACTGGCTCTCATAATGTGGC
64 AT-GTCTTACACTGGCTCTAATAATGAGGC
* *
25432478 CGATGCATGTCCTAGACATGTCTTACACTAGCTCACA
1 CGATGCATGTCCCAGACATGTCTTACACTAGCACACA
25432515 CAAGTGACCC
Statistics
Matches: 112, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
90 9 0.08
91 16 0.14
92 18 0.16
93 14 0.12
94 52 0.46
95 3 0.03
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (92 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCATAGCCAATGCATGTCCCAAACAT
GTCTTACACTGGCTCTAATAATGAGGC
Found at i:25440695 original size:48 final size:48
Alignment explanation
Indices: 25440636--25440763 Score: 154
Period size: 46 Copynumber: 2.7 Consensus size: 48
25440626 TATGTGTGCT
* **
25440636 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCTAGATATTTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCTAGAGA-CGAGAGCC
* * * * *
25440684 AGTGTAAGACATGTCTGGGACATGCA-CCG-GTGTTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCTAGAGACGAGAGCC
25440730 AGTGTAAGACATGTCTGGGACATGCATCAGCCTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCTC
25440764 GCGATGGACA
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
45 1 0.02
46 34 0.52
47 4 0.06
48 27 0.41
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCTCTAGAGACGAGAGCC
Found at i:25440797 original size:48 final size:47
Alignment explanation
Indices: 25440633--25440801 Score: 178
Period size: 48 Copynumber: 3.6 Consensus size: 47
25440623 TGATATGTGT
* **
25440633 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCTAGATATTTAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATA-GAAA
* * * ** * * *
25440681 GCCAGTGTAAGACATGTCTGGGACATGCACCGGTGTTGAGA-CGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATAGAAA
* *
25440727 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGCGATGGACAA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATAGA-AA
* *
25440775 GCTAGTGTAAGACCTGTTTGGGACATG
1 GCTAGTGTAAGACATGTCTGGGACATG
25440802 GCGTTAGCTT
Statistics
Matches: 97, Mismatches: 22, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
46 35 0.36
47 2 0.02
48 60 0.62
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (47 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGATAGAAA
Found at i:25442012 original size:26 final size:26
Alignment explanation
Indices: 25441976--25442025 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
25441966 TGATGACCTT
25441976 GTCGGGATATTATATGCATTCCTCTC
1 GTCGGGATATTATATGCATTCCTCTC
25442002 GTCGGGATATTATATGCATTCCTC
1 GTCGGGATATTATATGCATTCCTC
25442026 GTTCTCAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.20, C:0.22, G:0.20, T:0.38
Consensus pattern (26 bp):
GTCGGGATATTATATGCATTCCTCTC
Found at i:25445074 original size:42 final size:41
Alignment explanation
Indices: 25445015--25445128 Score: 111
Period size: 42 Copynumber: 2.7 Consensus size: 41
25445005 AAGCTATTAA
* * *
25445015 GATTTCGTATAACACCATATCTGGGATATGACCTCGGTATG
1 GATTTCGTATAAGACCATATCAGGGATATGACCTCGATATG
** * * *
25445056 TGATTTCGTATAAGACCATGCCAGGGACATGGCGTCGATATG
1 -GATTTCGTATAAGACCATATCAGGGATATGACCTCGATATG
* * *
25445098 GTATTTCATGTAAGACCATATCGGGGATATG
1 G-ATTTCGTATAAGACCATATCAGGGATATG
25445129 GAACTGAAAC
Statistics
Matches: 57, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
41 1 0.02
42 56 0.98
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (41 bp):
GATTTCGTATAAGACCATATCAGGGATATGACCTCGATATG
Found at i:25450099 original size:16 final size:16
Alignment explanation
Indices: 25450078--25450117 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
25450068 TGTTGAAAAA
25450078 GCACTAGCTATTTTAG
1 GCACTAGCTATTTTAG
25450094 GCACTAGCTATTTTAG
1 GCACTAGCTATTTTAG
*
25450110 GCGCTAGC
1 GCACTAGC
25450118 ATTAATTTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.33
Consensus pattern (16 bp):
GCACTAGCTATTTTAG
Found at i:25455029 original size:37 final size:37
Alignment explanation
Indices: 25454956--25455028 Score: 139
Period size: 36 Copynumber: 2.0 Consensus size: 37
25454946 AGCTATGTTT
25454956 TGTTCTTAATAGTTAGTCTAACTTGTTCTTAAAAAAA
1 TGTTCTTAATAGTTAGTCTAACTTGTTCTTAAAAAAA
25454993 TGTTCTTAATAGTTA-TCTAACTTGTTCTTAAAAAAA
1 TGTTCTTAATAGTTAGTCTAACTTGTTCTTAAAAAAA
25455029 AACTATGTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
36 21 0.58
37 15 0.42
ACGTcount: A:0.36, C:0.11, G:0.10, T:0.44
Consensus pattern (37 bp):
TGTTCTTAATAGTTAGTCTAACTTGTTCTTAAAAAAA
Found at i:25459422 original size:27 final size:27
Alignment explanation
Indices: 25459324--25459437 Score: 113
Period size: 27 Copynumber: 4.2 Consensus size: 27
25459314 TTAGTTTACC
* * * *
25459324 AAATTACTAAAATACCCTTGTTTTACA
1 AAATTACCAAAATACCCCTGATTTATA
**
25459351 AAATTACCAAAATA-CCCTCGATCAATA
1 AAATTACCAAAATACCCCT-GATTTATA
* *
25459378 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGATTTATA
* * *
25459405 AAATTACCAAAATACCCCTAATTTGTG
1 AAATTACCAAAATACCCCTGATTTATA
25459432 AAATTA
1 AAATTA
25459438 TCGAAAAACC
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
26 3 0.04
27 65 0.90
28 4 0.06
ACGTcount: A:0.43, C:0.21, G:0.06, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTTATA
Found at i:25459493 original size:27 final size:27
Alignment explanation
Indices: 25459462--25459733 Score: 298
Period size: 27 Copynumber: 10.1 Consensus size: 27
25459452 ATTCGTAAAA
* *
25459462 TACTAAAATACCCTTGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
* * *
25459489 TACTAAAATACCCCTATATGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
* * *
25459516 TACCGAAATACCCTTGTAGGGTAGAAC
1 TACTGAAATACCCCTGTAGGGTAGAAT
* * * *
25459543 TACCGAAATACCCTTGTAAGGTAGAAA
1 TACTGAAATACCCCTGTAGGGTAGAAT
**
25459570 TACCAAAATACCCCTGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
*
25459597 TAC-CAAATACCCCTGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
* *
25459623 TATTGAAATACCTCTGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
*
25459650 TACCGAAATACCCCTGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAT
*
25459677 TA-TCGAAATACCCCTCTAGGGTAGAAT
1 TACT-GAAATACCCCTGTAGGGTAGAAT
* * * *
25459704 TA-TCGAGATACCCTTGTGGGGTAAAAT
1 TACT-GAAATACCCCTGTAGGGTAGAAT
25459731 TAC
1 TAC
25459734 CATTTTGCCC
Statistics
Matches: 213, Mismatches: 29, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
26 24 0.11
27 189 0.89
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
TACTGAAATACCCCTGTAGGGTAGAAT
Found at i:25459517 original size:80 final size:81
Alignment explanation
Indices: 25459406--25459735 Score: 318
Period size: 80 Copynumber: 4.1 Consensus size: 81
25459396 TGGTTTGTAA
** * ** *
25459406 AATTACCAAAATACCCCTA-ATTTGT-GAAATTATCGAAAAACCCTCG-ATTCGTA-AAATACTA
1 AATTACCAAAATACCCCTATA-GGGTAG-AATTATCGAAATACCCTCGTA-GGGTAGAAATACTG
25459467 AAATACCCTTGTAGGGTAG
63 AAATACCCTTGTAGGGTAG
* * * * * *
25459486 AATTACTAAAATACCCCTATATGGTAGAATTACCGAAATACCCTTGTAGGGTAGAACTACCGAAA
1 AATTACCAAAATACCCCTATAGGGTAGAATTATCGAAATACCCTCGTAGGGTAGAAATACTGAAA
*
25459551 TACCCTTGTAAGGTAG
66 TACCCTTGTAGGGTAG
* * * * *
25459567 AAATACCAAAATACCCCTGTAGGGTAGAATTA-CCAAATACCC-CTGTAGGGTAGAATTATTGAA
1 AATTACCAAAATACCCCTATAGGGTAGAATTATCGAAATACCCTC-GTAGGGTAGAAATACTGAA
25459630 ATA-CCTCTGTAGGGTAG
65 ATACCCT-TGTAGGGTAG
* * *
25459647 AATTACCGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTC-TAGGGTAGAATTA-TCGA
1 AATTACCAAAATACCCCTATAGGGTAGAATTATCGAAATA-CCCTCGTAGGGTAGAAATACT-GA
* * *
25459710 GATACCCTTGTGGGGTAA
64 AATACCCTTGTAGGGTAG
25459728 AATTACCA
1 AATTACCA
25459736 TTTTGCCCCT
Statistics
Matches: 211, Mismatches: 28, Indels: 21
0.81 0.11 0.08
Matches are distributed among these distances:
79 3 0.01
80 108 0.51
81 93 0.44
82 6 0.03
83 1 0.00
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.26
Consensus pattern (81 bp):
AATTACCAAAATACCCCTATAGGGTAGAATTATCGAAATACCCTCGTAGGGTAGAAATACTGAAA
TACCCTTGTAGGGTAG
Found at i:25459531 original size:54 final size:54
Alignment explanation
Indices: 25459467--25459734 Score: 333
Period size: 54 Copynumber: 5.0 Consensus size: 54
25459457 TAAAATACTA
** * *
25459467 AAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTATATGGTAGAATTACCG
1 AAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCG
* * * * *
25459521 AAATACCCTTGTAGGGTAGAACTACCGAAATACCCTTGTAAGGTAGAAATACCA
1 AAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCG
* **
25459575 AAATACCCCTGTAGGGTAGAATTACC-AAATACCCCTGTAGGGTAGAATTATTG
1 AAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCG
*
25459628 AAATA-CCTCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTATCG
1 AAATACCCT-TGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCG
* * * * * * *
25459682 AAATACCCCTCTAGGGTAGAATTATCGAGATACCCTTGTGGGGTAAAATTACC
1 AAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACC
25459735 ATTTTGCCCC
Statistics
Matches: 185, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
52 2 0.01
53 43 0.23
54 138 0.75
55 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (54 bp):
AAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCG
Found at i:25459550 original size:107 final size:107
Alignment explanation
Indices: 25459455--25459705 Score: 310
Period size: 107 Copynumber: 2.3 Consensus size: 107
25459445 ACCCTCGATT
* * *
25459455 CGTA-AAATACTAAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTATATGGTAGAATTAC
1 CGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTAC-AAAATACCCCTATAGGGTAGAATTAC
*
25459519 CGAAATACC-CTTGTAGGGTAGAACTACCGAAATACCCTTGTAA
65 CGAAATACCTC-TGTAGGGTAGAACTACCGAAATACCCTCGTAA
* * * **
25459562 GGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTACCAAATACCCCTGTAGGGTAGAATTATT
1 CGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTACAAAATACCCCTATAGGGTAGAATTACC
* *
25459627 GAAATACCTCTGTAGGGTAGAATTACCGAAATACCC-CTGTAG
66 GAAATACCTCTGTAGGGTAGAACTACCGAAATACCCTC-GTAA
* * * * *
25459669 GGTAGAATTATCGAAATACCCCTCTAGGGTAGAATTA
1 CGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTA
25459706 TCGAGATACC
Statistics
Matches: 126, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
107 94 0.75
108 32 0.25
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (107 bp):
CGTAGAAATACCAAAATACCCCTGTAGGGTAGAATTACAAAATACCCCTATAGGGTAGAATTACC
GAAATACCTCTGTAGGGTAGAACTACCGAAATACCCTCGTAA
Found at i:25459605 original size:134 final size:134
Alignment explanation
Indices: 25459467--25459735 Score: 367
Period size: 134 Copynumber: 2.0 Consensus size: 134
25459457 TAAAATACTA
* * *
25459467 AAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTATATGGTAGAATTACCGAAATACCCTTG
1 AAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTG
* * *
25459532 TAGGGTAGAACTACCGAAATACCCTTGTAAGGTAGAAATACCAAAATACCCCTGTAGGGTAGAAT
66 TAGGGTAGAACTACCGAAATACCCCTCTAAGGTAGAAATACCAAAATACCCCTGTAGGGTAAAAT
25459597 TACC
131 TACC
* * * *
25459601 AAATACCCCTGTAGGGTAGAATTATTGAAATACCTCTGTAGGGTAGAATTACCGAAATACCCCTG
1 AAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTG
* * * * * * * * *
25459666 TAGGGTAGAATTATCGAAATACCCCTCTAGGGTAGAATTATCGAGATACCCTTGTGGGGTAAAAT
66 TAGGGTAGAACTACCGAAATACCCCTCTAAGGTAGAAATACCAAAATACCCCTGTAGGGTAAAAT
25459731 TACC
131 TACC
25459735 A
1 A
25459736 TTTTGCCCCT
Statistics
Matches: 116, Mismatches: 19, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
134 116 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (134 bp):
AAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACCGAAATACCCCTG
TAGGGTAGAACTACCGAAATACCCCTCTAAGGTAGAAATACCAAAATACCCCTGTAGGGTAAAAT
TACC
Found at i:25459973 original size:25 final size:25
Alignment explanation
Indices: 25459939--25460008 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
25459929 AGGAAGTGCT
*
25459939 AAAAGGGCTTTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* * * *
25459964 AAAAGGGCTTTACACCAATTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
25459989 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
25460009 ATTAAAAGAG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:25460021 original size:24 final size:24
Alignment explanation
Indices: 25459989--25460035 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 24
25459979 CAATTTATCA
**
25459989 AAAAGGGCTTTGCC-CCAGTTATT
1 AAAAGGGCTAGGCCTCCAGTTATT
25460012 AAAAGAGGCTAGGCCTCCAGTTAT
1 AAAAG-GGCTAGGCCTCCAGTTAT
25460036 ATGATAAGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 7 0.35
25 8 0.40
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (24 bp):
AAAAGGGCTAGGCCTCCAGTTATT
Found at i:25461071 original size:55 final size:55
Alignment explanation
Indices: 25460984--25461240 Score: 238
Period size: 55 Copynumber: 4.8 Consensus size: 55
25460974 ATTAGGGTTT
* *
25460984 AAGGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGGTTTCTAAGGC
* * * * * *
25461039 AAGGAGATCATGTAAGACCATGTCAAGACATGGC-ATTGATAAGCTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGGT-TTCTAAGGC
*
25461094 AAAGG-T-CTCATGTAAGACCATG-CTAATG-CATGGC-ATTGGTGA-G-TTCATAAGGC
1 -AAGGATAC-CATGTAAGACCATGTC-AA-GACATGGCAATTGGTAAGGTTTC-TAAGGC
*
25461147 AAGAATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAA-GTTTC-AA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGGTTTCTAAGGC
* * *
25461196 AAGGATACCATGTAAGACCATGACAAGTCATGGCAA-CGGTAAGGT
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGGT
25461241 ACCCATGTAT
Statistics
Matches: 168, Mismatches: 21, Indels: 31
0.76 0.10 0.14
Matches are distributed among these distances:
49 38 0.23
50 2 0.01
52 7 0.04
53 35 0.21
54 16 0.10
55 65 0.39
56 5 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (55 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGGTTTCTAAGGC
Found at i:25462771 original size:93 final size:93
Alignment explanation
Indices: 25462661--25462831 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
25462651 GCCCATAAGT
* *
25462661 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
25462726 TGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
* * *
25462754 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCGTAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
25462819 CGAGTTCGGATGC
66 CGAGTTCGGATGC
25462832 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:25462828 original size:46 final size:46
Alignment explanation
Indices: 25462653--25462828 Score: 189
Period size: 46 Copynumber: 3.8 Consensus size: 46
25462643 TGTAACCCGC
* * *
25462653 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
25462699 CCATAAGTGAACTCAGACTCAACTCAATGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
25462749 --TTCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
25462792 CCGTAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
25462829 TGCTCAACCA
Statistics
Matches: 107, Mismatches: 14, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 62 0.58
47 28 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:25470282 original size:46 final size:46
Alignment explanation
Indices: 25470215--25470343 Score: 217
Period size: 46 Copynumber: 2.8 Consensus size: 46
25470205 TGTAACCCGC
*
25470215 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT--GAGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGA-CATTCGCAT
25470261 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
25470307 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
25470344 TGCTCAACCA
Statistics
Matches: 80, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
45 2 0.03
46 76 0.95
47 2 0.03
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:25471746 original size:16 final size:16
Alignment explanation
Indices: 25471725--25471755 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25471715 ATAAATTTGA
25471725 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
25471741 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
25471756 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:25477043 original size:130 final size:130
Alignment explanation
Indices: 25476868--25477127 Score: 475
Period size: 130 Copynumber: 2.0 Consensus size: 130
25476858 GTTATTCAGG
25476868 TACTTGAAAATATGCTTAGATGCTGTGTACTGGAATTTCAAGGCAGTTGGGAAAAATATTTACCA
1 TACTTGAAAATATGCTTAGATGCTGTGTACTGGAATTTCAAGGCAGTTGGGAAAAATATTTACCA
* *
25476933 TTAGTAGAGTTTTCCTACAATAATAGTTATCAGTCGAGTTTGAAGATGGCACCTTATGAAGCTTT
66 TTAGTAGAGTTTGCCTACAATAATAGTTATCAGTCAAGTTTGAAGATGGCACCTTATGAAGCTTT
* *
25476998 TACTTGAAGATATGCTTAGATGTTGTGTACTGGAATTTCAAGGCAGTTGGGAAAAATATTTACCA
1 TACTTGAAAATATGCTTAGATGCTGTGTACTGGAATTTCAAGGCAGTTGGGAAAAATATTTACCA
*
25477063 TTAGTAGAGTTTGCCTAGAATAATAGTTATCAGTCAAGTTTGAAGATGGCACCTTATGAAGCTTT
66 TTAGTAGAGTTTGCCTACAATAATAGTTATCAGTCAAGTTTGAAGATGGCACCTTATGAAGCTTT
25477128 GTATGGACGT
Statistics
Matches: 125, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
130 125 1.00
ACGTcount: A:0.32, C:0.12, G:0.22, T:0.35
Consensus pattern (130 bp):
TACTTGAAAATATGCTTAGATGCTGTGTACTGGAATTTCAAGGCAGTTGGGAAAAATATTTACCA
TTAGTAGAGTTTGCCTACAATAATAGTTATCAGTCAAGTTTGAAGATGGCACCTTATGAAGCTTT
Found at i:25479070 original size:55 final size:54
Alignment explanation
Indices: 25478983--25479237 Score: 255
Period size: 55 Copynumber: 4.8 Consensus size: 54
25478973 ATTAGGGTTT
*
25478983 AAGGATACCATGTAAGACCATGCCAA-AGCATGGCAATTGGTAAGGTTTCTAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGA-CATGGCAATTGGTAA-GTTTCTAAGGC
* * * * *
25479038 AAGGAAATCATGTAAGACTATGTCAAGACATGGC-ATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTT--TCTAAGGC
* * *
25479093 AAAGG-TCCCATGTAAGACCATG-CTAAGGCATGGC-ATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGTC-AAGACATGGCAATTGGTAAGTTTC-TAAGGC
25479146 AAGGATACCATGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGGC
* * *
25479195 AAGGATACCACGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAG
25479238 GTACCCGCGT
Statistics
Matches: 170, Mismatches: 20, Indels: 26
0.79 0.09 0.12
Matches are distributed among these distances:
49 40 0.24
52 7 0.04
53 40 0.24
54 14 0.08
55 64 0.38
56 5 0.03
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGGCAATTGGTAAGTTTCTAAGGC
Found at i:25479189 original size:108 final size:110
Alignment explanation
Indices: 25478990--25479190 Score: 300
Period size: 108 Copynumber: 1.8 Consensus size: 110
25478980 TTTAAGGATA
*
25478990 CCATGTAAGACCATGCCAAAGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAATCATGTAAGA
1 CCATGTAAGACCATGCCAAAGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
* *
25479055 CTATGTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
* * * *
25479100 CCATGTAAGACCATGCTAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAAGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGAAACCATGTAAG
*
25479162 ACCATGTCAAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGATAAGTT
25479191 TCAAAAGGAT
Statistics
Matches: 82, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
107 3 0.04
108 47 0.57
109 7 0.09
110 25 0.30
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAAGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGAAACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTC
Found at i:25483771 original size:20 final size:20
Alignment explanation
Indices: 25483746--25483792 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
25483736 GATTTGATGT
25483746 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
25483766 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
25483786 ACATGAT
1 ACATGAT
25483793 GTATTCATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:25483931 original size:24 final size:24
Alignment explanation
Indices: 25483840--25483947 Score: 128
Period size: 25 Copynumber: 4.4 Consensus size: 24
25483830 AGGAAGTGCA
* *
25483840 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
* *
25483864 GAGAAGGGCTTTTGCCCCAGTTTATT
1 -AAAAGGGC-TTTGCCCCAGTTTATC
25483890 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGC-TTTGCCCCAGTTTATC
*
25483915 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
25483938 AAAAGAGGCT
1 AAAAG-GGCT
25483948 AGGCCTCCAG
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
23 9 0.12
24 14 0.19
25 38 0.51
26 13 0.18
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:25483958 original size:49 final size:50
Alignment explanation
Indices: 25483840--25483960 Score: 158
Period size: 49 Copynumber: 2.4 Consensus size: 50
25483830 AGGAAGTGCA
*
25483840 AAAAGGGCTATGCCCCAGTTTACCGAGAAGGGCTTTTGCCCCAGTTTATT
1 AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTTGCCCCAGTTTATT
* *
25483890 AAAAGGGCTTTTGCCCCAGTTTATC-AAAAGGGC-TTTGCCCCAG-TTATT
1 AAAAGGGC-TATGCCCCAGTTTACCGAAAAGGGCTTTTGCCCCAGTTTATT
*
25483938 AAAAGAGGCTAGGCCTCCAGTTT
1 AAAAG-GGCTATGCC-CCAGTTT
25483961 TATGATAAAG
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
48 14 0.22
49 20 0.32
50 15 0.24
51 14 0.22
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (50 bp):
AAAAGGGCTATGCCCCAGTTTACCGAAAAGGGCTTTTGCCCCAGTTTATT
Found at i:25484191 original size:31 final size:31
Alignment explanation
Indices: 25484156--25484219 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
25484146 CATTTACAAT
25484156 AAAGGCTTCAG-CCTAGTAATATGAAATATGA
1 AAAGGCTTCAGTCC-AGTAATATGAAATATGA
* **
25484187 AAAGGCTTCGGTCCAGTGTTATGAAATATGA
1 AAAGGCTTCAGTCCAGTAATATGAAATATGA
25484218 AA
1 AA
25484220 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 27 0.93
32 2 0.07
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCAGTCCAGTAATATGAAATATGA
Found at i:25485084 original size:20 final size:20
Alignment explanation
Indices: 25485027--25485097 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
25485017 AAAAAGACAA
* * *
25485027 ATTTTAAATTTCTGTAAA-T
1 ATTTTGAATTTTTGAAAATT
* *
25485046 ATTTTGAA-TCTTAAAAATT
1 ATTTTGAATTTTTGAAAATT
25485065 ATTTTGAATTTTTGAAAATT
1 ATTTTGAATTTTTGAAAATT
25485085 ATTTTGAATTTTT
1 ATTTTGAATTTTT
25485098 TTTTTGTAAT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
18 5 0.12
19 16 0.37
20 22 0.51
ACGTcount: A:0.35, C:0.03, G:0.07, T:0.55
Consensus pattern (20 bp):
ATTTTGAATTTTTGAAAATT
Found at i:25489311 original size:115 final size:115
Alignment explanation
Indices: 25489109--25489338 Score: 451
Period size: 115 Copynumber: 2.0 Consensus size: 115
25489099 ATGTAATTCA
*
25489109 CAATAGTAGGACTTCTTCTCCAAGAGAGGGTAAGGTTGTTGGTGGAAGTGCATGGTTGACCTTTC
1 CAATAGTAGGACTTCTTCTCCAAGAGAGGGTAAGGTTGTTGGTGGAAGTGAATGGTTGACCTTTC
25489174 ACTCGATCCATGATGAGACCACAAGTAAGGTAGGAAAAACAGATTTCCTG
66 ACTCGATCCATGATGAGACCACAAGTAAGGTAGGAAAAACAGATTTCCTG
25489224 CAATAGTAGGACTTCTTCTCCAAGAGAGGGTAAGGTTGTTGGTGGAAGTGAATGGTTGACCTTTC
1 CAATAGTAGGACTTCTTCTCCAAGAGAGGGTAAGGTTGTTGGTGGAAGTGAATGGTTGACCTTTC
25489289 ACTCGATCCATGATGAGACCACAAGTAAGGTAGGAAAAACAGATTTCCTG
66 ACTCGATCCATGATGAGACCACAAGTAAGGTAGGAAAAACAGATTTCCTG
25489339 AGGTAATAGG
Statistics
Matches: 114, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
115 114 1.00
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.26
Consensus pattern (115 bp):
CAATAGTAGGACTTCTTCTCCAAGAGAGGGTAAGGTTGTTGGTGGAAGTGAATGGTTGACCTTTC
ACTCGATCCATGATGAGACCACAAGTAAGGTAGGAAAAACAGATTTCCTG
Found at i:25508120 original size:43 final size:43
Alignment explanation
Indices: 25508063--25508155 Score: 118
Period size: 43 Copynumber: 2.2 Consensus size: 43
25508053 ATATCGTACA
**
25508063 ATGCCAATGCCCCAGAC-GTGGTCTTACAT-GTAATTACATATCG
1 ATGCCAATGCCCCAGACAG-GGTCTTAC-TCGTAAACACATATCG
* *
25508106 ATGCCACTGTCCCAGACAGGGTCTTACTCGTAAACACATATCG
1 ATGCCAATGCCCCAGACAGGGTCTTACTCGTAAACACATATCG
25508149 ATGCCAA
1 ATGCCAA
25508156 CATATTAAAC
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
42 1 0.02
43 41 0.95
44 1 0.02
ACGTcount: A:0.29, C:0.28, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAATGCCCCAGACAGGGTCTTACTCGTAAACACATATCG
Found at i:25508306 original size:55 final size:56
Alignment explanation
Indices: 25508140--25508342 Score: 309
Period size: 56 Copynumber: 3.6 Consensus size: 56
25508130 TACTCGTAAA
* *
25508140 CACATATCGATGCCAACATATTAAACGTGGTCTTACTTGCACACACATATTGAAAT
1 CACATATCGATGCCAACGTATTAAACGTGGTCTTACTTGCACACACATATTGGAAT
* *
25508196 CACATATCGATGCCAACGTATTAGACGTGGTCTTACTTGCACACACATATCGGAAT
1 CACATATCGATGCCAACGTATTAAACGTGGTCTTACTTGCACACACATATTGGAAT
* * *
25508252 TACATATCGATGCCAACGTATTAAATGT-GTCTTACTCGCACACACATATTGGAAT
1 CACATATCGATGCCAACGTATTAAACGTGGTCTTACTTGCACACACATATTGGAAT
* * *
25508307 CACATATCGATACCAACGCATTAAATGTGGTCTTAC
1 CACATATCGATGCCAACGTATTAAACGTGGTCTTAC
25508343 ACTTAATCAC
Statistics
Matches: 134, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
55 50 0.37
56 84 0.63
ACGTcount: A:0.33, C:0.24, G:0.15, T:0.29
Consensus pattern (56 bp):
CACATATCGATGCCAACGTATTAAACGTGGTCTTACTTGCACACACATATTGGAAT
Found at i:25508337 original size:111 final size:112
Alignment explanation
Indices: 25508141--25508342 Score: 325
Period size: 111 Copynumber: 1.8 Consensus size: 112
25508131 ACTCGTAAAC
*
25508141 ACATATCGATGCCAACATATTAAACGTGGTCTTACTTGCACACACATATTGAAATCACATATCGA
1 ACATATCGATGCCAACATATTAAACGTGGTCTTACTCGCACACACATATTGAAATCACATATCGA
* * *
25508206 TGCCAACGTATTAGACGTGGTCTTACTTGCACACACATATCGGAATT
66 TACCAACGCATTAAACGTGGTCTTACTTGCACACACATATCGGAATT
* * *
25508253 ACATATCGATGCCAACGTATTAAATGT-GTCTTACTCGCACACACATATTGGAATCACATATCGA
1 ACATATCGATGCCAACATATTAAACGTGGTCTTACTCGCACACACATATTGAAATCACATATCGA
*
25508317 TACCAACGCATTAAATGTGGTCTTAC
66 TACCAACGCATTAAACGTGGTCTTAC
25508343 ACTTAATCAC
Statistics
Matches: 82, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
111 57 0.70
112 25 0.30
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (112 bp):
ACATATCGATGCCAACATATTAAACGTGGTCTTACTCGCACACACATATTGAAATCACATATCGA
TACCAACGCATTAAACGTGGTCTTACTTGCACACACATATCGGAATT
Found at i:25508380 original size:43 final size:43
Alignment explanation
Indices: 25508333--25508537 Score: 193
Period size: 43 Copynumber: 4.8 Consensus size: 43
25508323 CGCATTAAAT
* * *
25508333 GTGGTCTTACACTTAATCACATATCTATGCTAATGTCCCAAAC
1 GTGGTCTTACACTTAATCACATATCGATGCCAATGTCCCAGAC
* * * * * * **
25508376 GTGGTGTTACAC-AAGAACACCTATCAATGCCACTGTCCTTGAC
1 GTGGTCTTACACTTA-ATCACATATCGATGCCAATGTCCCAGAC
** *
25508419 AG-GGTCGAACA-TGTAATCACATATCGATGCCAACGTCCCAGAC
1 -GTGGTCTTACACT-TAATCACATATCGATGCCAATGTCCCAGAC
*
25508462 GTGGTCTTACA-TGTAATCACATATCGATGCCAATGTCCCAGAT
1 GTGGTCTTACACT-TAATCACATATCGATGCCAATGTCCCAGAC
* *
25508505 ATGGTCTTACACGTAATCACATATCGATGCCAA
1 GTGGTCTTACACTTAATCACATATCGATGCCAA
25508538 CTCAAAAATG
Statistics
Matches: 129, Mismatches: 27, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
42 2 0.02
43 125 0.97
44 2 0.02
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (43 bp):
GTGGTCTTACACTTAATCACATATCGATGCCAATGTCCCAGAC
Found at i:25511660 original size:14 final size:14
Alignment explanation
Indices: 25511641--25511672 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
25511631 TCCAATCACC
25511641 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
25511655 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
25511669 GGGC
1 GGGC
25511673 TAAATGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.47, T:0.31
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:25516780 original size:14 final size:14
Alignment explanation
Indices: 25516761--25516792 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
25516751 TCCAATCACC
25516761 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
25516775 GGGCCAGTTTGGTT
1 GGGCCAGTTTGGTT
25516789 GGGC
1 GGGC
25516793 TAAATGACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.06, C:0.16, G:0.47, T:0.31
Consensus pattern (14 bp):
GGGCCAGTTTGGTT
Found at i:25520690 original size:27 final size:27
Alignment explanation
Indices: 25520660--25520772 Score: 163
Period size: 27 Copynumber: 4.2 Consensus size: 27
25520650 TACTGAAATG
*
25520660 CCCTCAATTTGTAGAATTACCATTTTA
1 CCCTCAATTTATAGAATTACCATTTTA
* * *
25520687 CCCTCGATTCATAGAATTATCATTTTA
1 CCCTCAATTTATAGAATTACCATTTTA
25520714 CCCTCAATTTATAGAATTACCATTTTA
1 CCCTCAATTTATAGAATTACCATTTTA
** *
25520741 CCCTTGATTTACAGAATTACCATTTTA
1 CCCTCAATTTATAGAATTACCATTTTA
25520768 CCCTC
1 CCCTC
25520773 GATCAGTAAA
Statistics
Matches: 75, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 75 1.00
ACGTcount: A:0.29, C:0.25, G:0.06, T:0.40
Consensus pattern (27 bp):
CCCTCAATTTATAGAATTACCATTTTA
Found at i:25520729 original size:54 final size:54
Alignment explanation
Indices: 25520660--25520772 Score: 181
Period size: 54 Copynumber: 2.1 Consensus size: 54
25520650 TACTGAAATG
* * *
25520660 CCCTCAATTTGTAGAATTACCATTTTACCCTCGATTCATAGAATTATCATTTTA
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTCACAGAATTACCATTTTA
* *
25520714 CCCTCAATTTATAGAATTACCATTTTACCCTTGATTTACAGAATTACCATTTTA
1 CCCTCAATTTATAGAATTACCATTTTACCCTCGATTCACAGAATTACCATTTTA
25520768 CCCTC
1 CCCTC
25520773 GATCAGTAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.29, C:0.25, G:0.06, T:0.40
Consensus pattern (54 bp):
CCCTCAATTTATAGAATTACCATTTTACCCTCGATTCACAGAATTACCATTTTA
Found at i:25520785 original size:27 final size:27
Alignment explanation
Indices: 25520674--25520789 Score: 135
Period size: 27 Copynumber: 4.3 Consensus size: 27
25520664 CAATTTGTAG
*
25520674 AATTACCATTTTACCCTCGATTCATAG
1 AATTACCATTTTACCCTCGATTCATAA
* * * *
25520701 AATTATCATTTTACCCTCAATTTATAG
1 AATTACCATTTTACCCTCGATTCATAA
* * * *
25520728 AATTACCATTTTACCCTTGATTTACAG
1 AATTACCATTTTACCCTCGATTCATAA
25520755 AATTACCATTTTACCCTCGA-TCAGTAA
1 AATTACCATTTTACCCTCGATTCA-TAA
25520782 AATTACCA
1 AATTACCA
25520790 AAACACCCTA
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 2 0.03
27 75 0.97
ACGTcount: A:0.33, C:0.23, G:0.06, T:0.38
Consensus pattern (27 bp):
AATTACCATTTTACCCTCGATTCATAA
Found at i:25520786 original size:54 final size:54
Alignment explanation
Indices: 25520660--25520789 Score: 154
Period size: 54 Copynumber: 2.4 Consensus size: 54
25520650 TACTGAAATG
** * * *
25520660 CCCTCAATTTGTAGAATTACCATTTTACCCTCGATTCATAGAATTATCATTTTA
1 CCCTCAATTCATAAAATTACCATTTTACCCTCGATTCACAGAATTACCATTTTA
* * * *
25520714 CCCTCAATTTATAGAATTACCATTTTACCCTTGATTTACAGAATTACCATTTTA
1 CCCTCAATTCATAAAATTACCATTTTACCCTCGATTCACAGAATTACCATTTTA
*
25520768 CCCTCGA-TCAGTAAAATTACCA
1 CCCTCAATTCA-TAAAATTACCA
25520790 AAACACCCTA
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
53 2 0.03
54 65 0.97
ACGTcount: A:0.32, C:0.24, G:0.07, T:0.38
Consensus pattern (54 bp):
CCCTCAATTCATAAAATTACCATTTTACCCTCGATTCACAGAATTACCATTTTA
Found at i:25520938 original size:27 final size:27
Alignment explanation
Indices: 25520778--25520933 Score: 190
Period size: 27 Copynumber: 5.8 Consensus size: 27
25520768 CCCTCGATCA
* *
25520778 GTAAAATTACCAAAACA-CCCTAGTCT
1 GTAAAATTACCAAAATACCCCTAGTTT
*** *
25520804 GTAAAATTGTTAAAATACCCCTGGTTT
1 GTAAAATTACCAAAATACCCCTAGTTT
25520831 GTAAAATTACCAAAATACCCCTAGTTT
1 GTAAAATTACCAAAATACCCCTAGTTT
* *
25520858 GTAAAGTTACCAAAATACCACTAGTTT
1 GTAAAATTACCAAAATACCCCTAGTTT
* * *
25520885 GTGAAATTACCGAAATA-CCCTCAATTT
1 GTAAAATTACCAAAATACCCCT-AGTTT
25520912 GTAAAATTACCAAAATACCCCT
1 GTAAAATTACCAAAATACCCCT
25520934 GATTTACAAA
Statistics
Matches: 108, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
26 16 0.15
27 88 0.81
28 4 0.04
ACGTcount: A:0.40, C:0.22, G:0.10, T:0.29
Consensus pattern (27 bp):
GTAAAATTACCAAAATACCCCTAGTTT
Found at i:25520954 original size:27 final size:27
Alignment explanation
Indices: 25520888--25521014 Score: 80
Period size: 27 Copynumber: 4.6 Consensus size: 27
25520878 CTAGTTTGTG
* * **
25520888 AAATTACCGAAATA-CCCTCAATTTGTA
1 AAATTACAGAAATACCCCT-GATTTACA
25520915 AAATTACCA-AAATACCCCTGATTTACA
1 AAATTA-CAGAAATACCCCTGATTTACA
* **
25520942 AAATTACAGAAATATCATTGACTTTTTA-A
1 AAATTACAGAAATACCCCTGA---TTTACA
* ** *
25520971 AAATTATAGAAATACCATTGGTTTACA
1 AAATTACAGAAATACCCCTGATTTACA
*
25520998 AAATTACTGAAATACCC
1 AAATTACAGAAATACCC
25521015 TTGGTTTGTA
Statistics
Matches: 80, Mismatches: 13, Indels: 14
0.75 0.12 0.13
Matches are distributed among these distances:
26 6 0.08
27 46 0.57
28 5 0.06
29 19 0.24
30 4 0.05
ACGTcount: A:0.44, C:0.18, G:0.07, T:0.31
Consensus pattern (27 bp):
AAATTACAGAAATACCCCTGATTTACA
Found at i:25520954 original size:54 final size:54
Alignment explanation
Indices: 25520815--25520955 Score: 162
Period size: 54 Copynumber: 2.6 Consensus size: 54
25520805 TAAAATTGTT
* * *
25520815 AAAATACCCCTGGTTTGTAAAATTACCA-AAATACCCCTAGTTTGTAAAGTTACC
1 AAAATACCCCTGATTTGTAAAATTA-CAGAAATACCCCTAATTTGTAAAATTACC
* * *
25520869 AAAATACCACT-AGTTTGTGAAATTACCGAAATA-CCCTCAATTTGTAAAATTACC
1 AAAATACCCCTGA-TTTGTAAAATTACAGAAATACCCCT-AATTTGTAAAATTACC
**
25520923 AAAATACCCCTGATTTACAAAATTACAGAAATA
1 AAAATACCCCTGATTTGTAAAATTACAGAAATA
25520956 TCATTGACTT
Statistics
Matches: 72, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
53 5 0.07
54 66 0.92
55 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (54 bp):
AAAATACCCCTGATTTGTAAAATTACAGAAATACCCCTAATTTGTAAAATTACC
Done.