Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 84 of 295
Found at i:26257297 original size:48 final size:48
Alignment explanation
Indices: 26257231--26257498 Score: 414
Period size: 48 Copynumber: 5.6 Consensus size: 48
26257221 CGTGCTAATA
*
26257231 TGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATG
1 TGCCTGTGTAAGACCATGTCTAGGACATGGCATCGACGATGATATATG
* *
26257279 TGCCTGTGTAAGACCATGTCTAGGACATGGCATCGACAATGATAAATG
1 TGCCTGTGTAAGACCATGTCTAGGACATGGCATCGACGATGATATATG
* *
26257327 TGCCTCTGTAAGACCATGTCTAGGACATGGCATCGGCGATGATATATG
1 TGCCTGTGTAAGACCATGTCTAGGACATGGCATCGACGATGATATATG
* *
26257375 TGCCTGTGTAAGACCATGCCTAGGACATGGCATTGACGATGATATATG
1 TGCCTGTGTAAGACCATGTCTAGGACATGGCATCGACGATGATATATG
* *
26257423 TGCCTGTGTCAA-ACCATGTCTGGGACATGGCATC-ACGATGATATGTG
1 TGCCTGTGT-AAGACCATGTCTAGGACATGGCATCGACGATGATATATG
**
26257470 TGCCTGTGTAAGACCATGTCGGGGACATG
1 TGCCTGTGTAAGACCATGTCTAGGACATG
26257499 ACATTCGTAC
Statistics
Matches: 202, Mismatches: 16, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
46 2 0.01
47 37 0.18
48 161 0.80
49 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (48 bp):
TGCCTGTGTAAGACCATGTCTAGGACATGGCATCGACGATGATATATG
Found at i:26259327 original size:38 final size:38
Alignment explanation
Indices: 26259284--26259362 Score: 149
Period size: 38 Copynumber: 2.1 Consensus size: 38
26259274 GCGTGAAATG
26259284 TGATATATGCTTGCATGAGTATGTAAATGTTGTGTAGA
1 TGATATATGCTTGCATGAGTATGTAAATGTTGTGTAGA
*
26259322 TGATATATGTTTGCATGAGTATGTAAATGTTGTGTAGA
1 TGATATATGCTTGCATGAGTATGTAAATGTTGTGTAGA
26259360 TGA
1 TGA
26259363 ACTAGTAGGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.29, C:0.04, G:0.27, T:0.41
Consensus pattern (38 bp):
TGATATATGCTTGCATGAGTATGTAAATGTTGTGTAGA
Found at i:26264179 original size:6 final size:6
Alignment explanation
Indices: 26264156--26264196 Score: 64
Period size: 6 Copynumber: 6.8 Consensus size: 6
26264146 TATCAAAACT
* *
26264156 AGAATC AAAATG AGAATC AGAATC AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT
26264197 TAGGTGACAC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.54, C:0.12, G:0.17, T:0.17
Consensus pattern (6 bp):
AGAATC
Found at i:26264248 original size:31 final size:31
Alignment explanation
Indices: 26264173--26264248 Score: 89
Period size: 31 Copynumber: 2.5 Consensus size: 31
26264163 AAATGAGAAT
* *
26264173 CAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGAATCAGGTAA
* * * *
26264204 CACAATTAGAATCATAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGAATCAGGTAA
*
26264235 CAGAATCAAAATCA
1 CAGAATCAGAATCA
26264249 AAATGTGAAT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.47, C:0.16, G:0.16, T:0.21
Consensus pattern (31 bp):
CAGAATCAGAATCAGAATCAGAATCAGGTAA
Found at i:26264419 original size:27 final size:27
Alignment explanation
Indices: 26264371--26264454 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 27
26264361 GCGAGGCTGC
*
26264371 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGATA
* * *
26264398 CAGATATTGTGGCTAGGCCACCAGAATAAA
1 CAGATATTGTGACGAAGCCACCAG-AT--A
* * *
26264428 TATATATATGTGGCGAAGCCACCAGAT
1 CAGATAT-TGTGACGAAGCCACCAGAT
26264455 TGCAGCGAGG
Statistics
Matches: 45, Mismatches: 8, Indels: 5
0.78 0.14 0.09
Matches are distributed among these distances:
27 20 0.44
28 2 0.04
30 8 0.18
31 15 0.33
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.23
Consensus pattern (27 bp):
CAGATATTGTGACGAAGCCACCAGATA
Found at i:26264787 original size:27 final size:27
Alignment explanation
Indices: 26264757--26264949 Score: 262
Period size: 27 Copynumber: 7.2 Consensus size: 27
26264747 AACACCCTAG
** *
26264757 GGGTAAAATGGTAATTTTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
26264784 GGGTAAAACAGTAATTCTATAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
26264811 GGATAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
26264838 GGGTAAAACAGTAATTTTGTAAATAGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* *
26264865 GGGTAAAACAGTAATTCTGTCAATCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
* * *
26264892 GGGTAAAACAATAATTTTTTAAGTCGA
1 GGGTAAAACAGTAATTTTGTAAATCGA
*
26264919 GGGTAAAACGGTAATTTTGTAAATC-A
1 GGGTAAAACAGTAATTTTGTAAATCGA
26264945 GGGTA
1 GGGTA
26264950 CTTTGGTAAT
Statistics
Matches: 146, Mismatches: 20, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
26 6 0.04
27 140 0.96
ACGTcount: A:0.41, C:0.08, G:0.22, T:0.30
Consensus pattern (27 bp):
GGGTAAAACAGTAATTTTGTAAATCGA
Found at i:26264998 original size:80 final size:79
Alignment explanation
Indices: 26264805--26265047 Score: 209
Period size: 81 Copynumber: 3.0 Consensus size: 79
26264795 TAATTCTATA
* * ** * *
26264805 AATCGAGGATAAAACAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATAGAGGGTA
1 AATCGAGGGTAAAACAATAATTTTACAAGTCGAGGGTAAAACAGTAATTTTGTAAAT-CAGGGTA
****
26264870 AAACAGTAATTCTGT-C
65 ATTTGGTAATT-T-TAC
** * *
26264886 AATCGAGGGTAAAACAATAATTTTTTAAGTCGAGGGTAAAACGGTAATTTTGTAAATCAGGGTAC
1 AATCGAGGGTAAAACAATAATTTTACAAGTCGAGGGTAAAACAGTAATTTTGTAAATCAGGGTAA
26264951 TTTGGTAATTTTAC
66 TTTGGTAATTTTAC
*** * *** ***
26264965 AAGTCGAGGGTATTTCAATAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAATCAGGGGT
1 AA-TCGAGGGTAAAACAATAATTTTACAAGTCGAGGGTAAAACAGTAATTTTGTAAATCA-GGGT
*
26265030 ATTTTGGTAATTTTAC
64 AATTTGGTAATTTTAC
26265046 AA
1 AA
26265048 ACTAGGGGTA
Statistics
Matches: 134, Mismatches: 25, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
78 1 0.01
79 4 0.03
80 56 0.42
81 73 0.54
ACGTcount: A:0.36, C:0.09, G:0.21, T:0.33
Consensus pattern (79 bp):
AATCGAGGGTAAAACAATAATTTTACAAGTCGAGGGTAAAACAGTAATTTTGTAAATCAGGGTAA
TTTGGTAATTTTAC
Found at i:26265048 original size:27 final size:27
Alignment explanation
Indices: 26264928--26265231 Score: 271
Period size: 27 Copynumber: 11.3 Consensus size: 27
26264918 AGGGTAAAAC
** *
26264928 GGTAATTTTGTAAATCA-GGGTACTTT
1 GGTAATTTTACAAATCAGGGGTATTTT
* *
26264954 GGTAATTTTACAAGTC-GAGGGTATTTC
1 GGTAATTTTACAAATCAG-GGGTATTTT
** ** *
26264981 AATAATTTTACAGGTC-GAGGGTATTTC
1 GGTAATTTTACAAATCAG-GGGTATTTT
* *
26265008 AGTAATTTCACAAATCAGGGGTATTTT
1 GGTAATTTTACAAATCAGGGGTATTTT
26265035 GGTAATTTTACAAA-CTAGGGGTATTTT
1 GGTAATTTTACAAATC-AGGGGTATTTT
* *
26265062 GATAATTTTA-AAAACTAGGGGTATTTT
1 GGTAATTTTACAAATC-AGGGGTATTTT
*
26265089 GGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAATCAGGGGTATTTT
* *
26265116 GGTAATTTTATAAA-CAAAGGGTATTTT
1 GGTAATTTTACAAATC-AGGGGTATTTT
* *
26265143 AGTAATTTTACAAACCAGGGGTATTTT
1 GGTAATTTTACAAATCAGGGGTATTTT
** * *
26265170 GGTAATTTTTTAAACCAAGGGTATTTT
1 GGTAATTTTACAAATCAGGGGTATTTT
** *
26265197 GGTAATTTTTTAAA-CTAAGGGTATTTT
1 GGTAATTTTACAAATC-AGGGGTATTTT
26265224 GGTAATTT
1 GGTAATTT
26265232 GGTAAACTAA
Statistics
Matches: 242, Mismatches: 27, Indels: 17
0.85 0.09 0.06
Matches are distributed among these distances:
26 19 0.08
27 217 0.90
28 6 0.02
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
GGTAATTTTACAAATCAGGGGTATTTT
Found at i:26265069 original size:81 final size:81
Alignment explanation
Indices: 26264928--26265231 Score: 319
Period size: 81 Copynumber: 3.8 Consensus size: 81
26264918 AGGGTAAAAC
** * * * * **
26264928 GGTAATTTTGTAAATCA-GGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTA
1 GGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACT-AAGGGTATTTTGATAATTTTA
*** *
26264991 CAGGTC-GAGGGTATTTC
65 CAAACCAG-GGGTATTTT
* * * * *
26265008 AGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTAA
1 GGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGATAATTTTAC
*
26265073 AAACTAGGGGTATTTT
66 AAACCAGGGGTATTTT
* *
26265089 GGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTT-AGTAATTTTA
1 GGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGA-TAATTTTA
26265153 CAAACCAGGGGTATTTT
65 CAAACCAGGGGTATTTT
** * ** *
26265170 GGTAATTTTTTAAACCAAGGGTATTTTGGTAATTTTTTAAACTAAGGGTATTTTGGTAATTT
1 GGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGATAATTT
26265232 GGTAAACTAA
Statistics
Matches: 189, Mismatches: 30, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
80 14 0.07
81 171 0.90
82 4 0.02
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (81 bp):
GGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTACAAACTAAGGGTATTTTGATAATTTTAC
AAACCAGGGGTATTTT
Found at i:26265238 original size:54 final size:54
Alignment explanation
Indices: 26265026--26265231 Score: 304
Period size: 54 Copynumber: 3.8 Consensus size: 54
26265016 CACAAATCAG
* * * * *
26265026 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTAAAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
26265080 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
* * *
26265134 GGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTTTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
** * *
26265188 GGGTATTTTGGTAATTTTTTAAACTAAGGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
26265232 GGTAAACTAA
Statistics
Matches: 139, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 139 1.00
ACGTcount: A:0.31, C:0.06, G:0.20, T:0.42
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAAA
Found at i:26266589 original size:47 final size:47
Alignment explanation
Indices: 26266508--26266618 Score: 141
Period size: 47 Copynumber: 2.4 Consensus size: 47
26266498 CACAATCGAT
* * * *
26266508 AAGTACCTATACCATGGCCCTTAGTCAAACCAAGGTAACTTATCTCG
1 AAGTACCTATACCATGGCACGTAGCCAAACCAAGGTAACTCATCTCG
* * * *
26266555 GAGTACCTATACCATGGCACGTAGCCAAATCAAGGTAACTCCTCTCT
1 AAGTACCTATACCATGGCACGTAGCCAAACCAAGGTAACTCATCTCG
*
26266602 AAATACCTATACCATGG
1 AAGTACCTATACCATGG
26266619 TCCGTGGCCA
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 54 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.24
Consensus pattern (47 bp):
AAGTACCTATACCATGGCACGTAGCCAAACCAAGGTAACTCATCTCG
Found at i:26270561 original size:16 final size:17
Alignment explanation
Indices: 26270534--26270568 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
26270524 TTAAATAAGC
*
26270534 TTTAATATATTTTATTA
1 TTTAATATATTTTAATA
26270551 TTTAA-ATATTTTAATA
1 TTTAATATATTTTAATA
26270567 TT
1 TT
26270569 GCATGAACTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (17 bp):
TTTAATATATTTTAATA
Found at i:26272211 original size:20 final size:20
Alignment explanation
Indices: 26272186--26272239 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
26272176 CACGGCCTTC
*
26272186 CCACACAGGCGTGTCCCAAG
1 CCACACGGGCGTGTCCCAAG
*
26272206 CCACACGGGTGTGTCCCAAG
1 CCACACGGGCGTGTCCCAAG
26272226 CCACACGGGCGTGT
1 CCACACGGGCGTGT
26272240 GACCCCTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.20, C:0.37, G:0.30, T:0.13
Consensus pattern (20 bp):
CCACACGGGCGTGTCCCAAG
Found at i:26293178 original size:44 final size:41
Alignment explanation
Indices: 26293073--26293198 Score: 171
Period size: 44 Copynumber: 3.0 Consensus size: 41
26293063 GTTATCAAAT
* * *
26293073 ATCGATGCCACTGTCCCAGACAGGGTCTTACACGAAATCAT
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCAA
*
26293114 ATACGATGCCAATGTCCCAGACATGGTCTTACACATAAATCTCAA
1 AT-CGATGCCAATGTCCCAGACATGGTCTTACAC-GAAA--TCAA
*
26293159 ATCGATGCCAATGTCCCAGACGTGGTCTTACACGAAATCA
1 ATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCA
26293199 CATACCAGAA
Statistics
Matches: 75, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
41 5 0.07
42 29 0.39
43 6 0.08
44 30 0.40
45 5 0.07
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (41 bp):
ATCGATGCCAATGTCCCAGACATGGTCTTACACGAAATCAA
Found at i:26293217 original size:44 final size:42
Alignment explanation
Indices: 26293035--26293203 Score: 180
Period size: 42 Copynumber: 4.0 Consensus size: 42
26293025 AACTCGTACA
* * * ** *
26293035 ATGCCAACGTCCCA-ACGTGGTCTTAAATGTTATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCACATA-CG
* *
26293077 ATGCCACTGTCCCAGACAG-GGTCTTACACGAAATCATATACG
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGAAATCACATACG
* * * *
26293119 ATGCCAATGTCCCAGACATGGTCTTACACATAAATCTCAAATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACAC-GAAATCACATA-CG
26293163 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCACATAC
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCACATAC
26293204 CAGAATCCTA
Statistics
Matches: 105, Mismatches: 17, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
42 41 0.39
43 33 0.31
44 31 0.30
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (42 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCACATACG
Found at i:26294593 original size:13 final size:14
Alignment explanation
Indices: 26294575--26294605 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
26294565 TTGTTATTCT
26294575 TTCTCTTC-TTTTC
1 TTCTCTTCTTTTTC
26294588 TTCTCTTCTTTTTC
1 TTCTCTTCTTTTTC
26294602 TTCT
1 TTCT
26294606 TCAATTCTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (14 bp):
TTCTCTTCTTTTTC
Found at i:26296017 original size:40 final size:40
Alignment explanation
Indices: 26295932--26296090 Score: 196
Period size: 40 Copynumber: 4.0 Consensus size: 40
26295922 CCGAATCCAA
* * * *
26295932 TTACTAGCACAAAACCTGTGGGACTTTAGGCCCGGATATA--
1 TTACCAGCACAAAGCCTGCGGGA-TTTA-ACCCGGATATACC
* * * *
26295972 GTACCAGCACTAAGCCTACGGGAATTAACCCGGATATACC
1 TTACCAGCACAAAGCCTGCGGGATTTAACCCGGATATACC
* *
26296012 TTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATACT
1 TTACCAGCACAAAGCCTGCGGGATTTAACCCGGATATACC
26296052 TTACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAC
1 TTACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAC
26296091 AATATATCGA
Statistics
Matches: 103, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
38 10 0.10
39 3 0.03
40 90 0.87
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.21
Consensus pattern (40 bp):
TTACCAGCACAAAGCCTGCGGGATTTAACCCGGATATACC
Found at i:26303520 original size:27 final size:27
Alignment explanation
Indices: 26303403--26303579 Score: 151
Period size: 27 Copynumber: 6.5 Consensus size: 27
26303393 ATATTGAGCC
* *
26303403 CGCACACTCAGTGCTATACA-A-TCAACT
1 CGCACACTTAGTGC-A-ACATAGTCAAAT
* * * *
26303430 CGCACACTTAGGGCCACGTAATCAAAT
1 CGCACACTTAGTGCAACATAGTCAAAT
* * *
26303457 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCAACATAGTCA-AAT
* ** * *
26303485 CGCAAACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAACATAGTCAAAT
* * **
26303512 CGCACACTTAGTGCATCATATTCATTT
1 CGCACACTTAGTGCAACATAGTCAAAT
26303539 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCAACATAGTCAAAT
26303566 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26303580 TGTACAATTT
Statistics
Matches: 120, Mismatches: 27, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
25 2 0.02
26 1 0.01
27 96 0.80
28 21 0.17
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCAACATAGTCAAAT
Found at i:26307135 original size:40 final size:39
Alignment explanation
Indices: 26307080--26307238 Score: 187
Period size: 40 Copynumber: 4.0 Consensus size: 39
26307070 CCGAATCCAG
* * *
26307080 TTACTAGCACAAAGCCTGCGGGACTTTAGGCCCGGATATA-
1 TTACCAGCACGAAGCCTGCGGGA-TTTA-ACCCGGATATAC
* * *
26307120 GTACCAGCACTAAGCCTGCGGGAATTAACCCGGATATAC
1 TTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAC
*
26307159 TTTACCAGTACGAAGCCTGCGGGATTTAACCC-GAGTATAC
1 -TTACCAGCACGAAGCCTGCGGGATTTAACCCGGA-TATAC
*
26307199 TTTACCAGCACGAAGCCTGCGGGATTTAACCCAGATATAC
1 -TTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAC
26307239 AATATATTGA
Statistics
Matches: 105, Mismatches: 10, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
38 10 0.10
39 5 0.05
40 88 0.84
41 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (39 bp):
TTACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAC
Found at i:26312284 original size:45 final size:45
Alignment explanation
Indices: 26312217--26312307 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 45
26312207 ATTTAATGTC
* * *
26312217 TAGGATCATATATCTTTAAAGATCACCTTCCATATTTGCCAAGCT
1 TAGGATCACATATATTTAAAGATCACCTTCCATATTTACCAAGCT
* * *
26312262 TAGGATCGCATATATTTGAAGATCACCTTCTATATTTACCAAGCT
1 TAGGATCACATATATTTAAAGATCACCTTCCATATTTACCAAGCT
26312307 T
1 T
26312308 TTAAGACAGG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (45 bp):
TAGGATCACATATATTTAAAGATCACCTTCCATATTTACCAAGCT
Found at i:26319096 original size:68 final size:68
Alignment explanation
Indices: 26318998--26319137 Score: 280
Period size: 68 Copynumber: 2.1 Consensus size: 68
26318988 AAATCACTTA
26318998 AATTGTGTCCATAAATGTCCAATAATAATATTAATAGTCTATTTACCATATAAACCCCTTAACCA
1 AATTGTGTCCATAAATGTCCAATAATAATATTAATAGTCTATTTACCATATAAACCCCTTAACCA
26319063 TTT
66 TTT
26319066 AATTGTGTCCATAAATGTCCAATAATAATATTAATAGTCTATTTACCATATAAACCCCTTAACCA
1 AATTGTGTCCATAAATGTCCAATAATAATATTAATAGTCTATTTACCATATAAACCCCTTAACCA
26319131 TTT
66 TTT
26319134 AATT
1 AATT
26319138 TCATAGTTAA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 72 1.00
ACGTcount: A:0.39, C:0.19, G:0.06, T:0.37
Consensus pattern (68 bp):
AATTGTGTCCATAAATGTCCAATAATAATATTAATAGTCTATTTACCATATAAACCCCTTAACCA
TTT
Found at i:26324473 original size:9 final size:9
Alignment explanation
Indices: 26324450--26324480 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
26324440 CGCTAGGTAC
26324450 GAGCTATAT
1 GAGCTATAT
26324459 -AGCTATAT
1 GAGCTATAT
26324467 GAGCTATAT
1 GAGCTATAT
26324476 GAGCT
1 GAGCT
26324481 CGAAATGATC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.32, C:0.13, G:0.23, T:0.32
Consensus pattern (9 bp):
GAGCTATAT
Found at i:26326494 original size:43 final size:43
Alignment explanation
Indices: 26326406--26326570 Score: 142
Period size: 43 Copynumber: 3.9 Consensus size: 43
26326396 TGAGATGTGG
* * *
26326406 TTACATGTAAGACCATGTTTGGGACATTGGCATTGTATTGTGA
1 TTACATGTAAGACCATGTCTGGGACATTGGCATTGTAATGCGA
* *
26326449 TTACGTGTAAGACCATGTCTGGGACATTTGCATCAT-TAAT-CGA
1 TTACATGTAAGACCATGTCTGGGACATTGGCAT--TGTAATGCGA
* * * * *
26326492 TTACATGTAAAACCCA-GTCTAGGACAGTGGCAATG-ATATGTGA
1 TTACATGTAAGA-CCATGTCTGGGACATTGGCATTGTA-ATGCGA
* * *
26326535 TAACATGTAAGACCATATCTGGGATA-TGGCATTGTA
1 TTACATGTAAGACCATGTCTGGGACATTGGCATTGTA
26326571 TGAGCTATAT
Statistics
Matches: 96, Mismatches: 18, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
41 2 0.02
42 12 0.12
43 75 0.78
44 6 0.06
45 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (43 bp):
TTACATGTAAGACCATGTCTGGGACATTGGCATTGTAATGCGA
Found at i:26339025 original size:43 final size:44
Alignment explanation
Indices: 26338954--26339088 Score: 184
Period size: 43 Copynumber: 3.1 Consensus size: 44
26338944 TATCGAAATG
* *
26338954 TGATATTCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
* * *
26338998 TGATA-TCGGGCTTTGAGCTTAGTAGGCTATGATGCCGGTGAAA
1 TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
*
26339041 T-ATTATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGA-TATTCG-GGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
26339086 TGA
1 TGA
26339089 AATGTTATGT
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
42 1 0.01
43 36 0.46
44 8 0.10
45 32 0.41
46 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.30, T:0.28
Consensus pattern (44 bp):
TGATATTCGGGCTTTGAGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:26339070 original size:45 final size:43
Alignment explanation
Indices: 26338971--26339088 Score: 166
Period size: 45 Copynumber: 2.7 Consensus size: 43
26338961 CGGGCTTCGG
*
26338971 GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTTGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGCCTTTGA
* * *
26339014 GCTTAGTAGGCTATGATGCCGGTGAAAT-ATTATTCGAGCCTTTGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGA-TA-TCG-GCCTTTGA
26339059 GCCTAGCAGGCTATAATGCCGGTGAAATGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATGA
26339089 AATGTTATGT
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
42 1 0.02
43 27 0.42
44 3 0.05
45 32 0.50
46 1 0.02
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (43 bp):
GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGCCTTTGA
Found at i:26339401 original size:38 final size:38
Alignment explanation
Indices: 26339358--26339517 Score: 182
Period size: 38 Copynumber: 4.2 Consensus size: 38
26339348 ATGATATTTT
* **
26339358 TATCCGGCTTAAAGACCGCAGGCTAT-ATGCTGGAATTA
1 TATCCGGGTTAAATCCCGCAGGCT-TCATGCTGGAATTA
*
26339396 TATCCGGGTTAAATCCTGCAGGCTTCATGCTGGTAA-TA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGG-AATTA
* * *
26339434 TATCCGGGTTAATTCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGAATTA
* *
26339472 TATCCGGGTTAAATCCCGCAGGCCT-AGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCA-TGCTGGAATTA
*
26339510 TATTCGGG
1 TATCCGGG
26339518 CCTTTGAGCC
Statistics
Matches: 106, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
37 2 0.02
38 102 0.96
39 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.26, T:0.31
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCATGCTGGAATTA
Found at i:26339574 original size:45 final size:44
Alignment explanation
Indices: 26339510--26339635 Score: 180
Period size: 45 Copynumber: 2.8 Consensus size: 44
26339500 GCTGGTATTA
* *
26339510 TATTCGGGCCTTTGAGCCTAGCAAGCTATTATGCCGGTGAGACAC
1 TATTC-GGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
* *
26339555 TATTCGAGCCTTTGGGCCTAGCAGGCTATAATGCCGGTGAGATAC
1 TATTCG-GCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
*
26339600 TATTCGGGCTTTCGAGCCTAGCAGGCTATAATGCCG
1 TATTCGGCCTTT-GAGCCTAGCAGGCTATAATGCCG
26339636 ATGAAATGAT
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
44 6 0.08
45 67 0.92
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (44 bp):
TATTCGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGACAC
Found at i:26339652 original size:45 final size:44
Alignment explanation
Indices: 26339513--26339669 Score: 136
Period size: 45 Copynumber: 3.5 Consensus size: 44
26339503 GGTATTATAT
* * * * * * *
26339513 TCGGGCCTTTGAGCCTAGCAAGCTATTATGCCGGTGAGACACTAT
1 TCGGGCC-TCGAGCCTAGCAGGCTATAATGCCGATGAAATACTAA
* * * * * *
26339558 TCGAGCCTTTGGGCCTAGCAGGCTATAATGCCGGTGAGATACTAT
1 TCGGGCC-TCGAGCCTAGCAGGCTATAATGCCGATGAAATACTAA
*
26339603 TCGGGCTTTCGAGCCTAGCAGGCTATAATGCCGATGAAATGA-TAA
1 TCGGGC-CTCGAGCCTAGCAGGCTATAATGCCGATGAAAT-ACTAA
*
26339648 TCGGGCCTCGATCCTAGCAGGC
1 TCGGGCCTCGAGCCTAGCAGGC
26339670 AAAATACCAG
Statistics
Matches: 96, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
44 14 0.15
45 81 0.84
46 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (44 bp):
TCGGGCCTCGAGCCTAGCAGGCTATAATGCCGATGAAATACTAA
Found at i:26342715 original size:21 final size:21
Alignment explanation
Indices: 26342689--26342741 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
26342679 CGCTGTTTCT
*
26342689 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
* *
26342710 AATCTCACTGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
26342731 AATCTCACCGC
1 AATCTCACCGC
26342742 CACTGCTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.30, C:0.36, G:0.09, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:26347639 original size:22 final size:22
Alignment explanation
Indices: 26347614--26347657 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
26347604 TAGTCATATA
26347614 ATAAATTATTAATATAATAAAT
1 ATAAATTATTAATATAATAAAT
* * *
26347636 ATAATTTATTATTTTAATAAAT
1 ATAAATTATTAATATAATAAAT
26347658 TATTTAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAAATTATTAATATAATAAAT
Found at i:26349569 original size:24 final size:24
Alignment explanation
Indices: 26349516--26349562 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
26349506 GTTCATTTTG
* *
26349516 ATTCAATATGTAATTTATTTCTAA
1 ATTCAATATGTAATTCATTTCCAA
26349540 ATTCAATATGTAATTCATTTCCA
1 ATTCAATATGTAATTCATTTCCA
26349563 GTTTCAACAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.36, C:0.13, G:0.04, T:0.47
Consensus pattern (24 bp):
ATTCAATATGTAATTCATTTCCAA
Found at i:26352181 original size:23 final size:24
Alignment explanation
Indices: 26352149--26352193 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
26352139 AAAGAAAATA
*
26352149 AAGAACAAAATAAAATTAAAACCC
1 AAGAACAAAAGAAAATTAAAACCC
*
26352173 AAGAA-AAAAGATAATTAAAAC
1 AAGAACAAAAGAAAATTAAAAC
26352194 TGAATTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.69, C:0.11, G:0.07, T:0.13
Consensus pattern (24 bp):
AAGAACAAAAGAAAATTAAAACCC
Found at i:26355985 original size:20 final size:21
Alignment explanation
Indices: 26355962--26356001 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
26355952 GTTTAAAAGG
*
26355962 GTATTTGTA-TTTTAAAAATA
1 GTATTTGTAGGTTTAAAAATA
*
26355982 GTATTTTTAGGTTTAAAAAT
1 GTATTTGTAGGTTTAAAAAT
26356002 TGGGTAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (21 bp):
GTATTTGTAGGTTTAAAAATA
Found at i:26357729 original size:17 final size:19
Alignment explanation
Indices: 26357703--26357739 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
26357693 TCTAAAACCC
26357703 ATGAGTATGAAC-TTTGGT
1 ATGAGTATGAACTTTTGGT
26357721 ATGAG-ATGAACTTTTGGT
1 ATGAGTATGAACTTTTGGT
26357739 A
1 A
26357740 AGAATACTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.30, C:0.05, G:0.27, T:0.38
Consensus pattern (19 bp):
ATGAGTATGAACTTTTGGT
Found at i:26358680 original size:19 final size:20
Alignment explanation
Indices: 26358652--26358691 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 20
26358642 TGTTTTGATG
26358652 AAAAATTTTCT-AAGTGTTCT
1 AAAAATTTTCTGAAGT-TTCT
26358672 AAAAA-TTTCTGAAGTTTCT
1 AAAAATTTTCTGAAGTTTCT
26358691 A
1 A
26358692 GTTTAGTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (20 bp):
AAAAATTTTCTGAAGTTTCT
Found at i:26364301 original size:29 final size:29
Alignment explanation
Indices: 26364259--26364316 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
26364249 TAAGGTGTAA
26364259 TGAACAACTTTTACTAAGTGATTTTTAGT
1 TGAACAACTTTTACTAAGTGATTTTTAGT
*
26364288 TGAATAACTTTTACTAAGTGATTTTTAGT
1 TGAACAACTTTTACTAAGTGATTTTTAGT
26364317 GAAAATGCAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.47
Consensus pattern (29 bp):
TGAACAACTTTTACTAAGTGATTTTTAGT
Found at i:26367992 original size:28 final size:28
Alignment explanation
Indices: 26367956--26368009 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
26367946 TAGCACCAAA
26367956 AACTTGACCAACTCCAGACGTACTAAAC
1 AACTTGACCAACTCCAGACGTACTAAAC
* * *
26367984 AACTTGACCACCTCCGGACGTGCTAA
1 AACTTGACCAACTCCAGACGTACTAA
26368010 CATCCAGAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.33, C:0.33, G:0.15, T:0.19
Consensus pattern (28 bp):
AACTTGACCAACTCCAGACGTACTAAAC
Found at i:26370760 original size:47 final size:48
Alignment explanation
Indices: 26370701--26370799 Score: 175
Period size: 47 Copynumber: 2.1 Consensus size: 48
26370691 TGAGTTATTG
*
26370701 GTTTGTGCTATTTAATTTTTGAAATACTTTATACTATTGATT-AATTT
1 GTTTGTGATATTTAATTTTTGAAATACTTTATACTATTGATTAAATTT
26370748 GTTTGTGATATTTAATTTTTGAAATACTTTATACTATTGATTAAATTT
1 GTTTGTGATATTTAATTTTTGAAATACTTTATACTATTGATTAAATTT
26370796 -TTTG
1 GTTTG
26370800 CTTATGAATG
Statistics
Matches: 50, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
47 45 0.90
48 5 0.10
ACGTcount: A:0.28, C:0.05, G:0.11, T:0.56
Consensus pattern (48 bp):
GTTTGTGATATTTAATTTTTGAAATACTTTATACTATTGATTAAATTT
Found at i:26375547 original size:19 final size:17
Alignment explanation
Indices: 26375496--26375567 Score: 63
Period size: 21 Copynumber: 3.9 Consensus size: 17
26375486 TTTATATATT
*
26375496 TTTTAATATTTTTAGAA
1 TTTTAATATTTTTATAA
26375513 TTTGTATTAATATTTTTATAGA
1 --T-T-TTAATATTTTTATA-A
26375535 TTTTAATTATTTTTATAA
1 TTTTAA-TATTTTTATAA
* *
26375553 TTTAAACATTTTTAT
1 TTTTAATATTTTTAT
26375568 TTATTTTAAG
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
17 8 0.17
18 10 0.22
19 12 0.26
20 2 0.04
21 13 0.28
22 1 0.02
ACGTcount: A:0.33, C:0.01, G:0.04, T:0.61
Consensus pattern (17 bp):
TTTTAATATTTTTATAA
Found at i:26375563 original size:17 final size:19
Alignment explanation
Indices: 26375524--26375567 Score: 56
Period size: 17 Copynumber: 2.4 Consensus size: 19
26375514 TTGTATTAAT
**
26375524 ATTTTTATAGATTTTAATT
1 ATTTTTATAGATTTTAAAC
26375543 ATTTTTATA-A-TTTAAAC
1 ATTTTTATAGATTTTAAAC
26375560 ATTTTTAT
1 ATTTTTAT
26375568 TTATTTTAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 13 0.57
18 1 0.04
19 9 0.39
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (19 bp):
ATTTTTATAGATTTTAAAC
Found at i:26379600 original size:25 final size:25
Alignment explanation
Indices: 26379572--26379628 Score: 105
Period size: 25 Copynumber: 2.3 Consensus size: 25
26379562 CAGTAGGACA
26379572 ATTAGTTAGAATAAATAATAGATTG
1 ATTAGTTAGAATAAATAATAGATTG
26379597 ATTAGTTAGAATAAATAATAGATTG
1 ATTAGTTAGAATAAATAATAGATTG
*
26379622 ATCAGTT
1 ATTAGTT
26379629 CCAAAGATGA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.46, C:0.02, G:0.16, T:0.37
Consensus pattern (25 bp):
ATTAGTTAGAATAAATAATAGATTG
Found at i:26381287 original size:69 final size:69
Alignment explanation
Indices: 26381206--26381344 Score: 233
Period size: 69 Copynumber: 2.0 Consensus size: 69
26381196 AACTAAGACT
* *
26381206 AGATTTGAATGTGTTTTCTTAATAAAAATAAAATCCGGTCTAATTTGGATTTGAGCCCGGTTTAA
1 AGATTTGAATGTGTTTTCTTAATAAAAATAAAATCCGGTCCAATTTGGATTTAAGCCCGGTTTAA
26381271 ACCC
66 ACCC
** *
26381275 AGATTTGAATGTGTTTTCTTAATAAATCTAAAATCCGGTCCAATTTGGGTTTAAGCCCGGTTTAA
1 AGATTTGAATGTGTTTTCTTAATAAAAATAAAATCCGGTCCAATTTGGATTTAAGCCCGGTTTAA
26381340 ACCC
66 ACCC
26381344 A
1 A
26381345 CTCGTCTTCT
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
69 65 1.00
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (69 bp):
AGATTTGAATGTGTTTTCTTAATAAAAATAAAATCCGGTCCAATTTGGATTTAAGCCCGGTTTAA
ACCC
Found at i:26385008 original size:20 final size:21
Alignment explanation
Indices: 26384985--26385028 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
26384975 AAAATAAAGG
26384985 AAAAAAATTTAAA-AAT-TTAT
1 AAAAAAA-TTAAATAATATTAT
*
26385005 AAAAACATTAAATAATATTAT
1 AAAAAAATTAAATAATATTAT
26385026 AAA
1 AAA
26385029 CATTAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 5 0.24
20 9 0.43
21 7 0.33
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (21 bp):
AAAAAAATTAAATAATATTAT
Found at i:26389460 original size:44 final size:44
Alignment explanation
Indices: 26389392--26389479 Score: 131
Period size: 44 Copynumber: 2.0 Consensus size: 44
26389382 ATTACATGTA
* * **
26389392 TCGCATCCATTATGAACTCGGACCAATTCAACGAGTTTAGATGC
1 TCGCATCCATTATGAACTCAGACCAACTCAACGACCTTAGATGC
*
26389436 TCGCATCCATTGTGAACTCAGACCAACTCAACGACCTTAGATGC
1 TCGCATCCATTATGAACTCAGACCAACTCAACGACCTTAGATGC
26389480 CTCATATATA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (44 bp):
TCGCATCCATTATGAACTCAGACCAACTCAACGACCTTAGATGC
Found at i:26405244 original size:18 final size:18
Alignment explanation
Indices: 26405207--26405244 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
26405197 ACCACAAGCA
* *
26405207 CAACCATTCTCAATTCAT
1 CAACCATTCTCAAGTAAT
26405225 CAACCATTCTCAAGTAAT
1 CAACCATTCTCAAGTAAT
26405243 CA
1 CA
26405245 TGAACCATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.37, C:0.32, G:0.03, T:0.29
Consensus pattern (18 bp):
CAACCATTCTCAAGTAAT
Found at i:26409296 original size:30 final size:30
Alignment explanation
Indices: 26409261--26409325 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
26409251 AAAAATATTG
26409261 TTAAAATATAAATAGTA-TAGATTAAAATAA
1 TTAAAAT-TAAATAGTATTAGATTAAAATAA
** **
26409291 TTAAAATTAAATTTTATTTTATTAAAATAA
1 TTAAAATTAAATAGTATTAGATTAAAATAA
26409321 TTAAA
1 TTAAA
26409326 TTTCAAGAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 7 0.23
30 23 0.77
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (30 bp):
TTAAAATTAAATAGTATTAGATTAAAATAA
Found at i:26416352 original size:55 final size:54
Alignment explanation
Indices: 26416267--26416498 Score: 275
Period size: 55 Copynumber: 4.4 Consensus size: 54
26416257 TAGGGTTTAC
*
26416267 GGATACCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAA
1 GGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGCAA
* *
26416322 GGATACCATGTAAGACCATGTCAAGACATGGC-ATTGGTAAGTTACTATAAGGCAAA
1 GGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTT--TCTAAGGC-AA
* * * *
26416378 GG-TCCCATGTAAGAGCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGCAA
1 GGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGCAA
* *
26416430 GGATACCATGTAAGACCATGTCGAGACATGGCAA-TGGTAAGTTTC-AA---AA
1 GGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGCAA
26416479 GGATACCATGTAAGACCATG
1 GGATACCATGTAAGACCATG
26416499 AAAAGTCATG
Statistics
Matches: 155, Mismatches: 15, Indels: 20
0.82 0.08 0.11
Matches are distributed among these distances:
49 22 0.14
52 7 0.05
53 39 0.25
54 13 0.08
55 70 0.45
56 4 0.03
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (54 bp):
GGATACCATGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGCAA
Found at i:26416468 original size:108 final size:110
Alignment explanation
Indices: 26416272--26416472 Score: 336
Period size: 108 Copynumber: 1.8 Consensus size: 110
26416262 TTTACGGATA
26416272 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
*
26416337 CCATGTCAAGACATGGCATTGGTAAGTTACTATAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGGTAAGTTACTATAAGGCAAAGGTC
* *
26416382 CCATGTAAGAGCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
*
26416444 ACCATGTCGAGACATGGCAATGGTAAGTT
65 ACCATGTCAAGACATGGCAATGGTAAGTT
26416473 TCAAAAGGAT
Statistics
Matches: 86, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
107 3 0.03
108 50 0.58
109 7 0.08
110 26 0.30
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.22
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGGTAAGTTACTATAAGGCAAAGGTC
Found at i:26416737 original size:16 final size:16
Alignment explanation
Indices: 26416716--26416746 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26416706 ATAAATTTGA
26416716 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
26416732 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
26416747 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:26419428 original size:51 final size:51
Alignment explanation
Indices: 26419344--26419476 Score: 139
Period size: 51 Copynumber: 2.6 Consensus size: 51
26419334 CGGATACCCG
* *
26419344 GTGGCC-AGCACATAGTACCAC-CATTGT-AGTCAAAGCTACCATCTT-CACAAA
1 GTGGCCTA-CACATAGTACCACAC-TTGTGA-TCAAAACCACC-TCTTACACAAA
* * *
26419395 GTGGCCTTCACATAGTACCACACTTGTGATCAAAACCATCTCTTACACATA
1 GTGGCCTACACATAGTACCACACTTGTGATCAAAACCACCTCTTACACAAA
* *
26419446 GTGGCCTACACTTAGTACCACACATGTGATC
1 GTGGCCTACACATAGTACCACACTTGTGATC
26419477 GAAGTTATCG
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
50 4 0.06
51 64 0.91
52 2 0.03
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (51 bp):
GTGGCCTACACATAGTACCACACTTGTGATCAAAACCACCTCTTACACAAA
Found at i:26428658 original size:40 final size:40
Alignment explanation
Indices: 26428626--26428937 Score: 482
Period size: 40 Copynumber: 7.8 Consensus size: 40
26428616 CCAGCATGAT
* * * * *
26428626 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
* ** * *
26428666 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
*
26428706 TGCTCTTCG-GAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGAG-ACTTAGCCCGGATACATCACTAGCACGAA
* *
26428746 TGCTCTTCGAGACTTAGCCCGGATACATTAGTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
26428786 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
26428826 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
26428866 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
*
26428906 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGAGACTTAGCCCGGATACATCACT
26428938 CTCAATTCTC
Statistics
Matches: 253, Mismatches: 17, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
39 1 0.00
40 251 0.99
41 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:26430422 original size:47 final size:47
Alignment explanation
Indices: 26430351--26430847 Score: 895
Period size: 47 Copynumber: 10.6 Consensus size: 47
26430341 CCCTTCGGGA
* * * * * *
26430351 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26430398 CCTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26430445 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26430492 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26430539 CTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26430586 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26430633 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26430680 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26430727 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26430774 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26430821 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
26430848 TATTCAAATA
Statistics
Matches: 438, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 438 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26430429 original size:25 final size:25
Alignment explanation
Indices: 26430401--26430479 Score: 76
Period size: 25 Copynumber: 3.3 Consensus size: 25
26430391 ACTCGGCCCT
26430401 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
** * * *
26430426 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
26430448 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
26430473 ATCACAT
1 ATCACAT
26430480 CGGCCATTAG
Statistics
Matches: 39, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 11 0.28
23 5 0.13
24 5 0.13
25 18 0.46
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:26452098 original size:23 final size:22
Alignment explanation
Indices: 26452055--26452144 Score: 83
Period size: 23 Copynumber: 3.9 Consensus size: 22
26452045 GTTGATGGAC
*
26452055 AGTAAGCTCTATTGAGCTGAAAT
1 AGTAAGCTCTA-CGAGCTGAAAT
*
26452078 AGTAAGCTCTGACGAGTTG-AAT
1 AGTAAGCTCT-ACGAGCTGAAAT
* *
26452100 CAGTAAGCTCATACGAGCTAAGAAC
1 -AGTAAGCTC-TACGAGCTGA-AAT
26452125 AGTAAGCTCTTACGAGCTGA
1 AGTAAGCTC-TACGAGCTGA
26452145 TATATCGGTA
Statistics
Matches: 55, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
22 3 0.05
23 30 0.55
24 20 0.36
25 2 0.04
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.24
Consensus pattern (22 bp):
AGTAAGCTCTACGAGCTGAAAT
Found at i:26463415 original size:70 final size:70
Alignment explanation
Indices: 26463297--26463437 Score: 266
Period size: 70 Copynumber: 2.0 Consensus size: 70
26463287 CCAATTTTCG
26463297 ATTTTTCTCTCATTCTAGGTTCAAATCTCATTTTTCGGGATCTAAAACATCATATTTTACTTATT
1 ATTTTTCTCTCATTCTAGGTTCAAATCTCATTTTTCGGGATCTAAAACATCATATTTTACTTATT
26463362 TAATT
66 TAATT
26463367 ATTTTTCTCTCATTCTAGGTTCAAATCTCATTTTTTCGGGATCT-AAACATCATATTTTACTTAT
1 ATTTTTCTCTCATTCTAGGTTCAAATCTCA-TTTTTCGGGATCTAAAACATCATATTTTACTTAT
26463431 TTAATT
65 TTAATT
26463437 A
1 A
26463438 ATGTTATTCA
Statistics
Matches: 70, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
70 57 0.81
71 13 0.19
ACGTcount: A:0.27, C:0.17, G:0.07, T:0.49
Consensus pattern (70 bp):
ATTTTTCTCTCATTCTAGGTTCAAATCTCATTTTTCGGGATCTAAAACATCATATTTTACTTATT
TAATT
Found at i:26465917 original size:16 final size:16
Alignment explanation
Indices: 26465898--26465928 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26465888 TTATAAACAC
*
26465898 ATATCATTATTTCATT
1 ATATCAATATTTCATT
26465914 ATATCAATATTTCAT
1 ATATCAATATTTCAT
26465929 ATACCATAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.13, G:0.00, T:0.52
Consensus pattern (16 bp):
ATATCAATATTTCATT
Found at i:26467815 original size:30 final size:30
Alignment explanation
Indices: 26467781--26467841 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
26467771 TCCTTAACTC
26467781 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
26467811 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
26467841 A
1 A
26467842 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:26469177 original size:42 final size:42
Alignment explanation
Indices: 26469111--26469265 Score: 159
Period size: 42 Copynumber: 3.7 Consensus size: 42
26469101 TGTGTTATCA
* * * * *
26469111 TGTAAGACCATATCTAGGATATGGCGTTGATATGAGATTTCG
1 TGTAAGACCATGTTTGGGACATGGCATTGATATGAGATTTCG
* *
26469153 TGTAAGACCATGTTTGGAACATGGCATTGAAATGAGATTTCG
1 TGTAAGACCATGTTTGGGACATGGCATTGATATGAGATTTCG
* * * ** *
26469195 TAG-AAGACCATGTTTGGGATATGGCATCGATGTGAGATCCCA
1 T-GTAAGACCATGTTTGGGACATGGCATTGATATGAGATTTCG
* *
26469237 TGTAAGACCACGTTCGGGACATGGCATTG
1 TGTAAGACCATGTTTGGGACATGGCATTG
26469266 GTATCTTATT
Statistics
Matches: 92, Mismatches: 19, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
41 1 0.01
42 90 0.98
43 1 0.01
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATGTTTGGGACATGGCATTGATATGAGATTTCG
Found at i:26483706 original size:46 final size:46
Alignment explanation
Indices: 26483570--26483778 Score: 139
Period size: 46 Copynumber: 4.6 Consensus size: 46
26483560 ATGCCTATGC
* * *
26483570 CATGTCCCAGACATGGTCTTACAC-GGAC-ACATCTC--GTAGCTGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCCTACATCTCAAGGA-C-GATG
* * * * * *
26483615 CATGTCCCAGACAAGTCTTACATTGGCTTACATCTCGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCCTACATCTCAAGGACGATG
* *
26483661 CATGTCCCAGACATGTCTTACACTAGCACT-CGTCTCAATGACGATG
1 CATGTCCCAGACATGTCTTACACTAGC-CTACATCTCAAGGACGATG
* * * *
26483707 CCATGTCCCAGACATGGTCTTACACTGGCTCT-CATGT--A-GCCAATG
1 -CATGTCCCAGACAT-GTCTTACACTAGC-CTACATCTCAAGGACGATG
* *
26483752 CCTGTCCCAGACATGTCTTACAGTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
26483779 TCACACAAGT
Statistics
Matches: 134, Mismatches: 23, Indels: 16
0.77 0.13 0.09
Matches are distributed among these distances:
43 11 0.08
44 21 0.16
45 20 0.15
46 48 0.36
47 16 0.12
48 18 0.13
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCCTACATCTCAAGGACGATG
Found at i:26483758 original size:91 final size:91
Alignment explanation
Indices: 26483611--26483778 Score: 225
Period size: 91 Copynumber: 1.8 Consensus size: 91
26483601 TCTCGTAGCT
* *
26483611 GATGCATGTCCCAGACAAGTCTTACATTGGCTTACATCTCGAGGCCGATGCATGTCCCAGACATG
1 GATGCATGTCCCAGACAAGTCTTACACTGGCTTACATCTC-AGGCCAATGCATGTCCCAGACATG
26483676 TCTTACACTAGCACTCGTCTCAATGAC
65 TCTTACACTAGCACTCGTCTCAATGAC
* * *
26483703 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATGT-A-GCCAATGCCTGTCCCAGACA
1 GATG-CATGTCCCAGACA-AGTCTTACACTGGCT-TACATCTCAGGCCAATGCATGTCCCAGACA
*
26483765 TGTCTTACAGTAGC
63 TGTCTTACACTAGC
26483779 TCACACAAGT
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
91 31 0.46
92 5 0.07
93 13 0.19
94 17 0.25
95 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (91 bp):
GATGCATGTCCCAGACAAGTCTTACACTGGCTTACATCTCAGGCCAATGCATGTCCCAGACATGT
CTTACACTAGCACTCGTCTCAATGAC
Found at i:26490059 original size:33 final size:33
Alignment explanation
Indices: 26490022--26490085 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
26490012 CAAGACAAGT
26490022 ATGGTTTGTACAAGTGGTTGGTTATGCCTTTCG
1 ATGGTTTGTACAAGTGGTTGGTTATGCCTTTCG
26490055 ATGGTTTGTACAAGTGGTTGGTTATGCCTTT
1 ATGGTTTGTACAAGTGGTTGGTTATGCCTTT
26490086 TGGCTTAACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.16, C:0.11, G:0.30, T:0.44
Consensus pattern (33 bp):
ATGGTTTGTACAAGTGGTTGGTTATGCCTTTCG
Found at i:26499520 original size:43 final size:43
Alignment explanation
Indices: 26499453--26499565 Score: 149
Period size: 43 Copynumber: 2.7 Consensus size: 43
26499443 CCATATATCG
* * * * *
26499453 ATGCCACT-TCCCAGACAGGGTCTTACACGAAATC-GATTAACC
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAAT-ACA
*
26499495 ATGCCAATGTCCCAAACATGGTCTTACACGAAATCTCAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAATACA
26499538 ATGCCAATGTCCCAGACATGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
26499566 TGTAATCAAG
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
42 7 0.11
43 53 0.85
44 2 0.03
ACGTcount: A:0.33, C:0.29, G:0.15, T:0.23
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAATACA
Found at i:26507494 original size:43 final size:43
Alignment explanation
Indices: 26507447--26507560 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 43
26507437 TCATATATCG
* * * * * *
26507447 ATGCCACTATCCCAGACAAGGTCTTACACGAAATC-GATTAACC
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAAT-ACA
* *
26507490 ATGCCAATGTCCCAAACATGGTCTTACACGTAATCTCAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAATACA
26507533 ATGCCAATGTCCCAGACATGGTCTTACA
1 ATGCCAATGTCCCAGACATGGTCTTACA
26507561 TGTAATCAAG
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 59 0.97
44 2 0.03
ACGTcount: A:0.33, C:0.29, G:0.14, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCTCAATACA
Found at i:26507566 original size:43 final size:43
Alignment explanation
Indices: 26507404--26507567 Score: 138
Period size: 43 Copynumber: 3.8 Consensus size: 43
26507394 AAGCTCGTAT
** * *
26507404 AATGCC-ATATCCCAGGTATGGTCTTACATGT--TATCATATATC
1 AATGCCAATATCCCAGACATGGTCTTACACGTAATCTCA-ATA-C
* * * * * *
26507446 GATGCCACTATCCCAGACAAGGTCTTACACGAAATC-GATTAAC
1 AATGCCAATATCCCAGACATGGTCTTACACGTAATCTCAAT-AC
* * *
26507489 CATGCCAATGTCCCAAACATGGTCTTACACGTAATCTCAATAC
1 AATGCCAATATCCCAGACATGGTCTTACACGTAATCTCAATAC
* *
26507532 AATGCCAATGTCCCAGACATGGTCTTACATGTAATC
1 AATGCCAATATCCCAGACATGGTCTTACACGTAATC
26507568 AAGTCTCGAT
Statistics
Matches: 96, Mismatches: 21, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
42 5 0.05
43 86 0.90
44 4 0.04
45 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (43 bp):
AATGCCAATATCCCAGACATGGTCTTACACGTAATCTCAATAC
Found at i:26514536 original size:26 final size:26
Alignment explanation
Indices: 26514500--26514567 Score: 100
Period size: 26 Copynumber: 2.6 Consensus size: 26
26514490 TTTACATCAT
* * *
26514500 TGCTCACACGATCTGTGGAATGGGTA
1 TGCTCACACGAGCTGTGAAATGGGCA
*
26514526 TGCTCACACGAGCTGTGAAATGGGCC
1 TGCTCACACGAGCTGTGAAATGGGCA
26514552 TGCTCACACGAGCTGT
1 TGCTCACACGAGCTGT
26514568 AGGTCGAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (26 bp):
TGCTCACACGAGCTGTGAAATGGGCA
Found at i:26515694 original size:39 final size:39
Alignment explanation
Indices: 26515651--26515779 Score: 177
Period size: 39 Copynumber: 3.3 Consensus size: 39
26515641 CTTTAACCCT
** *
26515651 GATATTTTTCCAGCACGTAGCCTGCGGACCTCAAGTCCG
1 GATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCCG
* * * *
26515690 GATATATTTCTAGCATATACCCTGCGGATCTCATGTCCG
1 GATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCCG
* *
26515729 GATGTTTTTCCAGCATATAGCCTCCGGACCTCATGTCCG
1 GATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCCG
26515768 GATATTTTTCCA
1 GATATTTTTCCA
26515780 ATCTCATATA
Statistics
Matches: 76, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 76 1.00
ACGTcount: A:0.21, C:0.28, G:0.19, T:0.32
Consensus pattern (39 bp):
GATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCCG
Found at i:26523557 original size:39 final size:39
Alignment explanation
Indices: 26523497--26523624 Score: 177
Period size: 39 Copynumber: 3.3 Consensus size: 39
26523487 CTTTAACCCT
** *
26523497 GATA-TTTTCCAGCACGTAGCCTGCGGACCTCAAGTCCG
1 GATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCCG
* * *
26523535 GATATATTTCTAGCATATAGCCTGCGGATCTCATGTCCG
1 GATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCCG
* *
26523574 GATGTTTTTCCAGCATATAGCCTGCGGACCTTATGTCCG
1 GATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCCG
26523613 GATATTTTTCCA
1 GATATTTTTCCA
26523625 ATCTCATATA
Statistics
Matches: 77, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
38 4 0.05
39 73 0.95
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (39 bp):
GATATTTTTCCAGCATATAGCCTGCGGACCTCATGTCCG
Found at i:26525143 original size:30 final size:30
Alignment explanation
Indices: 26525108--26525168 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
26525098 TAACCATAAG
26525108 AACAACAATCTATCCCCTTCAATTTCTCCC
1 AACAACAATCTATCCCCTTCAATTTCTCCC
26525138 AACAACAATCTATCCCCTTCAATTTCTCCC
1 AACAACAATCTATCCCCTTCAATTTCTCCC
26525168 A
1 A
26525169 TGGCCGAATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.31, C:0.39, G:0.00, T:0.30
Consensus pattern (30 bp):
AACAACAATCTATCCCCTTCAATTTCTCCC
Found at i:26527170 original size:45 final size:44
Alignment explanation
Indices: 26527106--26527275 Score: 204
Period size: 45 Copynumber: 3.8 Consensus size: 44
26527096 AACCCGCCCC
*
26527106 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-CGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTT--CATCCA
26527151 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C--GTT-CATCCA
* * *
26527199 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCATCCA
26527242 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
26527276 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 7, Indels: 19
0.81 0.05 0.14
Matches are distributed among these distances:
41 3 0.03
42 3 0.03
43 2 0.02
44 30 0.28
45 32 0.29
47 29 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (44 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACGTTCATCCA
Found at i:26527223 original size:47 final size:47
Alignment explanation
Indices: 26527106--26527278 Score: 177
Period size: 44 Copynumber: 3.8 Consensus size: 47
26527096 AACCCGCCCC
* * *
26527106 TAAGTGAACTCGGACTCAACTCAACGAGCTC-G--G-CGTTCGCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATT--CATCCA
*
26527151 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A-TT-CATCCA
*
26527199 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA---CATTCATCCA
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCATCCA
*
26527242 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGC
26527279 TCAACCATCC
Statistics
Matches: 109, Mismatches: 7, Indels: 22
0.79 0.05 0.16
Matches are distributed among these distances:
41 3 0.03
42 3 0.03
43 3 0.03
44 30 0.28
45 30 0.28
46 1 0.01
47 29 0.27
48 3 0.03
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (47 bp):
TAAGCGAACTCGGACTCAACTCAACGAGTTCGGATGCCATTCATCCA
Found at i:26527267 original size:91 final size:91
Alignment explanation
Indices: 26527111--26527278 Score: 293
Period size: 91 Copynumber: 1.8 Consensus size: 91
26527101 GCCCCTAAGT
*
26527111 GAACTCGGACTCAACTCAACGAGCTCGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGGCATTC-CATCCATAAGTGAACTCGGACTCAACTCAAC
26527176 GAGTTCGGATGCCTAGTTACATCTCAC
65 GAGTTCGGATGCCTAGTTACATCTCAC
*
26527203 GAACTCGGACTCAACTCAACGAGTTCGGACATT-CATCCATAAGTGAACTCGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACGAGCTCGG-CATTCCATCCATAAGTGAACTCGGACTCAACTCAAC
26527267 GAGTTCGGATGC
65 GAGTTCGGATGC
26527279 TCAACCATCC
Statistics
Matches: 73, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
91 43 0.59
92 27 0.37
93 3 0.04
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (91 bp):
GAACTCGGACTCAACTCAACGAGCTCGGCATTCCATCCATAAGTGAACTCGGACTCAACTCAACG
AGTTCGGATGCCTAGTTACATCTCAC
Found at i:26527728 original size:30 final size:30
Alignment explanation
Indices: 26527694--26527753 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
26527684 ATTTAATACG
26527694 AACTTTAAAAAAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
*** *
26527724 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAAAAAAATTACACTTTTGCCCCTA
26527754 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.05, T:0.37
Consensus pattern (30 bp):
AACTTTAAAAAAATTACACTTTTGCCCCTA
Found at i:26589264 original size:43 final size:43
Alignment explanation
Indices: 26589203--26589370 Score: 291
Period size: 43 Copynumber: 3.9 Consensus size: 43
26589193 ACATATCATT
* * *
26589203 TCACCGGCATTACGCCTGCTAAGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
* *
26589246 TCACCGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
26589289 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
26589332 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATA
1 TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATA
26589371 TAATACCAGC
Statistics
Matches: 118, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 118 1.00
ACGTcount: A:0.30, C:0.35, G:0.23, T:0.12
Consensus pattern (43 bp):
TCACCGGCACTAAGCCTGCTAGGCACGAAGGCCCGAATACACA
Found at i:26589411 original size:38 final size:38
Alignment explanation
Indices: 26589363--26589446 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 38
26589353 GGCACGAAGG
* * *
26589363 CCCGAATATAATACCAGCACTAGGCCTACGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTACGGGATTTAA
* *
26589401 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTACGGGATTTAA
26589439 CCCGAATA
1 CCCGAATA
26589447 CACATCAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.20
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTACGGGATTTAA
Found at i:26615949 original size:27 final size:26
Alignment explanation
Indices: 26615912--26616026 Score: 149
Period size: 27 Copynumber: 4.3 Consensus size: 26
26615902 AGCATGGCTG
* *
26615912 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
26615938 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
26615966 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
26615993 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
26616020 CCAGAAC
1 CCAGAAC
26616027 GCTTCCTCCA
Statistics
Matches: 80, Mismatches: 6, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 5 0.06
27 58 0.73
28 17 0.21
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:26615971 original size:54 final size:54
Alignment explanation
Indices: 26615912--26616026 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
26615902 AGCATGGCTG
*
26615912 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * *
26615966 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
26616020 CCAGAAC
1 CCAGAAC
26616027 GCTTCCTCCA
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:26617671 original size:26 final size:26
Alignment explanation
Indices: 26617635--26617770 Score: 227
Period size: 26 Copynumber: 5.2 Consensus size: 26
26617625 CATGAAATTC
* *
26617635 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
* *
26617661 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCTA
26617687 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
26617713 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
*
26617739 TTACCATGGAACATTTACCTAACCTA
1 TTATCATGGAACATTTACCTAACCTA
26617765 TTATCA
1 TTATCA
26617771 ATTTGTATCA
Statistics
Matches: 106, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 106 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCTA
Found at i:26621744 original size:27 final size:26
Alignment explanation
Indices: 26621707--26621821 Score: 140
Period size: 27 Copynumber: 4.3 Consensus size: 26
26621697 AGCATGGCTG
* *
26621707 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
26621733 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
26621761 CCAGAATAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* * *
26621788 CCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
26621815 CCAGAAC
1 CCAGAAC
26621822 GCTTCCTCCA
Statistics
Matches: 78, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
26 5 0.06
27 56 0.72
28 17 0.22
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:26621766 original size:54 final size:54
Alignment explanation
Indices: 26621707--26621821 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
26621697 AGCATGGCTG
*
26621707 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * * * *
26621761 CCAGAATAGATATATGTGGCAGAGCCACCAGATCAGATATTTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
26621815 CCAGAAC
1 CCAGAAC
26621822 GCTTCCTCCA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
54 35 0.66
55 18 0.34
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:26621986 original size:28 final size:26
Alignment explanation
Indices: 26621924--26621997 Score: 76
Period size: 28 Copynumber: 2.8 Consensus size: 26
26621914 AAATTAACCC
** *
26621924 TAGGGGTATAACGGTAATTTTGCACC
1 TAGGGGTATAATAGTAATTTTGCACA
*
26621950 TAGGGGTATAATAGTAATTTTCGATACA
1 TAGGGGTATAATAGTAATTTT-G-CACA
* *
26621978 TAGGGGTATTATAGCAATTT
1 TAGGGGTATAATAGTAATTT
26621998 AGCTACTTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
26 19 0.47
27 1 0.03
28 20 0.50
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.35
Consensus pattern (26 bp):
TAGGGGTATAATAGTAATTTTGCACA
Found at i:26625005 original size:49 final size:49
Alignment explanation
Indices: 26624952--26625141 Score: 211
Period size: 50 Copynumber: 3.8 Consensus size: 49
26624942 AAACTATCTT
26624952 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCA
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCA
* * * * *
26625001 GTACACGTAGTAGCCTGCTCTTAGTACTACACATGTGACCTAACTAT-CT
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC-AATTATCCA
* * * * * **
26625050 GATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATCGG
1 G-TACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA-TTATCCA
* *
26625102 GTACGCATAGTACCCTGCACTTAGTACTACACATGCGACC
1 GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACC
26625142 TAGCTACATA
Statistics
Matches: 117, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
49 39 0.33
50 42 0.36
51 35 0.30
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
GTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCA
Found at i:26625081 original size:26 final size:26
Alignment explanation
Indices: 26625002--26625082 Score: 64
Period size: 26 Copynumber: 3.2 Consensus size: 26
26624992 AATTATCCAG
* *
26625002 TACACGTAGTAGCCTGCTCTTAGTAC
1 TACACGTAGTAGCCTACACTTAGTAC
* *
26625028 TACACAT-GT-GACCTA-AC-TATCTGA-
1 TACACGTAGTAG-CCTACACTTA-GT-AC
26625052 TACACGTAGTAGCCTACACTTAGTAC
1 TACACGTAGTAGCCTACACTTAGTAC
26625078 TACAC
1 TACAC
26625083 ACGTGATCGA
Statistics
Matches: 41, Mismatches: 6, Indels: 16
0.65 0.10 0.25
Matches are distributed among these distances:
23 2 0.05
24 9 0.22
25 13 0.32
26 15 0.37
27 2 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (26 bp):
TACACGTAGTAGCCTACACTTAGTAC
Found at i:26625161 original size:101 final size:99
Alignment explanation
Indices: 26624943--26625143 Score: 260
Period size: 101 Copynumber: 2.0 Consensus size: 99
26624933 TATGTAGCCA
* * *
26624943 AACTATCTTG-TACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCAGTACAC
1 AACTATC-TGATACACGTAGTAGCCTACACTTAGTACTACACACGCGACCAATTATCCAGTACAC
* * * *
26625007 GTAGTAGCCTGCTCTTAGTACTACACATGTGACCT
65 ATAGTACCCTGCACTTAGTACTACACATGCGACCT
* * ** *
26625042 AACTATCTGATACACGTAGTAGCCTACACTTAGTACTACACACGTGATCGAAGTTATCGGGTACG
1 AACTATCTGATACACGTAGTAGCCTACACTTAGTACTACACACGCGA-CCAA-TTATCCAGTACA
26625107 CATAGTACCCTGCACTTAGTACTACACATGCGACCT
64 CATAGTACCCTGCACTTAGTACTACACATGCGACCT
26625143 A
1 A
26625144 GCTACATATA
Statistics
Matches: 87, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
98 2 0.02
99 40 0.46
100 3 0.03
101 42 0.48
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (99 bp):
AACTATCTGATACACGTAGTAGCCTACACTTAGTACTACACACGCGACCAATTATCCAGTACACA
TAGTACCCTGCACTTAGTACTACACATGCGACCT
Found at i:26630852 original size:29 final size:28
Alignment explanation
Indices: 26630814--26630911 Score: 90
Period size: 29 Copynumber: 3.4 Consensus size: 28
26630804 AATCGACCAC
* *
26630814 TGAAATGGGATAACTTCGGCTATCGATTA
1 TGAAAAGGGATAACTT-GGCTATCAATTA
** * * *
26630843 TGAAAAGGGAT-GGTGATGACCATCAAATA
1 TGAAAAGGGATAACT--TGGCTATCAATTA
26630872 TGAAAAGGGATAACTTTGGCTATCAATTA
1 TGAAAAGGGATAAC-TTGGCTATCAATTA
26630901 TGAAAAGGGAT
1 TGAAAAGGGAT
26630912 GGTGACGACC
Statistics
Matches: 53, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
28 1 0.02
29 50 0.94
30 1 0.02
31 1 0.02
ACGTcount: A:0.38, C:0.10, G:0.26, T:0.27
Consensus pattern (28 bp):
TGAAAAGGGATAACTTGGCTATCAATTA
Found at i:26630904 original size:58 final size:58
Alignment explanation
Indices: 26630814--26630970 Score: 226
Period size: 58 Copynumber: 2.7 Consensus size: 58
26630804 AATCGACCAC
* * * *
26630814 TGAAATGGGATAACTTCGGCTATCGATTATGAAAAGGGATGGTGATGACCATCAAATA
1 TGAAAAGGGATAACTTCGGCTATCAATTATGAAAAGGGATGGTGACGACCATCAAAAA
*
26630872 TGAAAAGGGATAACTTTGGCTATCAATTATGAAAAGGGATGGTGACGACCATCAAAAA
1 TGAAAAGGGATAACTTCGGCTATCAATTATGAAAAGGGATGGTGACGACCATCAAAAA
* * *
26630930 TGAAAAGGGTTAGCTTCAGCTAT-AGATTATGAAAAGGGATG
1 TGAAAAGGGATAACTTCGGCTATCA-ATTATGAAAAGGGATG
26630971 ACCATCGATT
Statistics
Matches: 89, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
57 1 0.01
58 88 0.99
ACGTcount: A:0.38, C:0.11, G:0.26, T:0.25
Consensus pattern (58 bp):
TGAAAAGGGATAACTTCGGCTATCAATTATGAAAAGGGATGGTGACGACCATCAAAAA
Found at i:26630925 original size:29 final size:29
Alignment explanation
Indices: 26630841--26630938 Score: 108
Period size: 29 Copynumber: 3.4 Consensus size: 29
26630831 GGCTATCGAT
26630841 TATGAAAAGGGATGGTGATGACCATCAAA
1 TATGAAAAGGGATGGTGATGACCATCAAA
** * * * *
26630870 TATGAAAAGGGATAACT-TTGGCTATCAAT
1 TATGAAAAGGGAT-GGTGATGACCATCAAA
*
26630899 TATGAAAAGGGATGGTGACGACCATCAAA
1 TATGAAAAGGGATGGTGATGACCATCAAA
*
26630928 AATGAAAAGGG
1 TATGAAAAGGG
26630939 TTAGCTTCAG
Statistics
Matches: 53, Mismatches: 14, Indels: 4
0.75 0.20 0.06
Matches are distributed among these distances:
28 1 0.02
29 51 0.96
30 1 0.02
ACGTcount: A:0.42, C:0.10, G:0.27, T:0.21
Consensus pattern (29 bp):
TATGAAAAGGGATGGTGATGACCATCAAA
Found at i:26632515 original size:25 final size:26
Alignment explanation
Indices: 26632487--26632540 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 26
26632477 ATTTTAATCC
* *
26632487 TTTTTAAATTTTTTA-AATTTATTTA
1 TTTTTAAATATTATATAATTTATTTA
*
26632512 -TTTTAAATATTATATATTTTATTTA
1 TTTTTAAATATTATATAATTTATTTA
26632537 TTTT
1 TTTT
26632541 ACCATAAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
24 12 0.50
25 9 0.38
26 3 0.12
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (26 bp):
TTTTTAAATATTATATAATTTATTTA
Found at i:26632538 original size:16 final size:16
Alignment explanation
Indices: 26632497--26632532 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
26632487 TTTTTAAATT
*
26632497 TTTTAAAT-TTATTTA
1 TTTTAAATATTATATA
26632512 TTTTAAATATTATATA
1 TTTTAAATATTATATA
26632528 TTTTA
1 TTTTA
26632533 TTTATTTTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTTAAATATTATATA
Found at i:26632592 original size:16 final size:16
Alignment explanation
Indices: 26632571--26632601 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26632561 ATGTAAAAAA
26632571 TTTATTATATATTATT
1 TTTATTATATATTATT
*
26632587 TTTATTATTTATTAT
1 TTTATTATATATTAT
26632602 ATTATTTACA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTATTATATATTATT
Found at i:26632609 original size:19 final size:19
Alignment explanation
Indices: 26632570--26632628 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
26632560 AATGTAAAAA
*
26632570 ATTTATTATATA-T-TATT
1 ATTTATTATTTATTATATT
26632587 -TTTATTATTTATTATATT
1 ATTTATTATTTATTATATT
*
26632605 ATTTA-CATTTTATTATATAT
1 ATTTATTA-TTTATTATAT-T
26632625 ATTT
1 ATTT
26632629 TGATTTATAC
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
16 10 0.29
17 1 0.03
18 5 0.14
19 14 0.40
20 5 0.14
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (19 bp):
ATTTATTATTTATTATATT
Found at i:26632615 original size:26 final size:26
Alignment explanation
Indices: 26632570--26632683 Score: 80
Period size: 26 Copynumber: 4.4 Consensus size: 26
26632560 AATGTAAAAA
*
26632570 ATTTATTATA-TA-TTA-TTTTTATT
1 ATTTATTATATTATTTACATTTTATT
26632593 ATTTATTATATTATTTACATTTTATT
1 ATTTATTATATTATTTACATTTTATT
* *
26632619 ATATATATTTTGATT-TATACATTTTATT
1 AT-T-TATTAT-ATTATTTACATTTTATT
*
26632647 A--TA-TATATTATTCACTATATTTTATT
1 ATTTATTATATTATT---TACATTTTATT
*
26632673 ATATATTATAT
1 ATTTATTATAT
26632684 AATTATCTAT
Statistics
Matches: 72, Mismatches: 6, Indels: 20
0.73 0.06 0.20
Matches are distributed among these distances:
22 3 0.04
23 13 0.18
24 4 0.06
25 3 0.04
26 20 0.28
27 1 0.01
28 20 0.28
29 8 0.11
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (26 bp):
ATTTATTATATTATTTACATTTTATT
Found at i:26632627 original size:28 final size:28
Alignment explanation
Indices: 26632586--26632678 Score: 99
Period size: 28 Copynumber: 3.5 Consensus size: 28
26632576 TATATATTAT
*
26632586 TTTTATTAT-T-TATTATATTATTTACA
1 TTTTATTATATATATTATATTATATACA
*
26632612 TTTTATTATATATATTTTGATT-TATACA
1 TTTTATTATATATATTAT-ATTATATACA
*
26632640 TTTTATTATATATATTAT-TCACTAT--A
1 TTTTATTATATATATTATATTA-TATACA
26632666 TTTTATTATATAT
1 TTTTATTATATAT
26632679 TATATAATTA
Statistics
Matches: 58, Mismatches: 4, Indels: 10
0.81 0.06 0.14
Matches are distributed among these distances:
26 24 0.41
27 1 0.02
28 30 0.52
29 3 0.05
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.62
Consensus pattern (28 bp):
TTTTATTATATATATTATATTATATACA
Found at i:26632635 original size:19 final size:20
Alignment explanation
Indices: 26632570--26632636 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 20
26632560 AATGTAAAAA
*
26632570 ATTTATTATATATTATTTTT
1 ATTTATTATATATTATTTTC
*
26632590 A-TTATTTATTATATTATTTAC
1 ATTTA-TTA-TATATTATTTTC
*
26632611 ATTTTATTATATA-TATTTTG
1 A-TTTATTATATATTATTTTC
26632631 ATTTAT
1 ATTTAT
26632637 ACATTTTATT
Statistics
Matches: 39, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
19 8 0.21
20 10 0.26
21 15 0.38
22 3 0.08
23 3 0.08
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.66
Consensus pattern (20 bp):
ATTTATTATATATTATTTTC
Found at i:26632693 original size:29 final size:27
Alignment explanation
Indices: 26632611--26632703 Score: 77
Period size: 28 Copynumber: 3.4 Consensus size: 27
26632601 TATTATTTAC
* * *
26632611 ATTTTATTATATATATT-TTGATTTATAC
1 ATTTTATTATATATATTATTCA-CTAT-T
26632639 ATTTTATTATATATATTATTCACTA-T
1 ATTTTATTATATATATTATTCACTATT
26632665 ATTTTATTATATATTATATAATT-ATCTATT
1 ATTTTATTATATA-TAT-T-ATTCA-CTATT
26632695 ATTTT-TTAT
1 ATTTTATTAT
26632704 TAGGTATAAT
Statistics
Matches: 56, Mismatches: 3, Indels: 11
0.80 0.04 0.16
Matches are distributed among these distances:
26 13 0.23
27 3 0.05
28 21 0.38
29 13 0.23
30 6 0.11
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.61
Consensus pattern (27 bp):
ATTTTATTATATATATTATTCACTATT
Found at i:26642267 original size:40 final size:40
Alignment explanation
Indices: 26642220--26642352 Score: 158
Period size: 40 Copynumber: 3.3 Consensus size: 40
26642210 TTATGCTTTA
*
26642220 GGCACTTAGTGTGCGATACGACATAGCTTCAACTTTATAT
1 GGCACTTAGTGTGCGATACGACATAGCTTCAACTATATAT
* * *
26642260 GGCACTTAGTGTGTGATTCGACATAGCTTCAGCTATATAT
1 GGCACTTAGTGTGCGATACGACATAGCTTCAACTATATAT
** * ** * *
26642300 GGCACTTAGTGTGCGATTTGACATAACTTCGGCTATGTAC
1 GGCACTTAGTGTGCGATACGACATAGCTTCAACTATATAT
*
26642340 GACACTTAGTGTG
1 GGCACTTAGTGTG
26642353 AGAGATATCG
Statistics
Matches: 82, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 82 1.00
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (40 bp):
GGCACTTAGTGTGCGATACGACATAGCTTCAACTATATAT
Found at i:26642394 original size:28 final size:28
Alignment explanation
Indices: 26642336--26642394 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 28
26642326 CTTCGGCTAT
* * *
26642336 GTACGACACTTAGTGTGAGAGATATCGA
1 GTACGACACTTAGTGTGACAGACATCAA
* * *
26642364 GTACGGCACTTAGTGTGCCAGACATTAA
1 GTACGACACTTAGTGTGACAGACATCAA
26642392 GTA
1 GTA
26642395 TTTAATGGCA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (28 bp):
GTACGACACTTAGTGTGACAGACATCAA
Found at i:26644190 original size:46 final size:48
Alignment explanation
Indices: 26644118--26644220 Score: 147
Period size: 46 Copynumber: 2.2 Consensus size: 48
26644108 GACAGGACAG
* * * *
26644118 GACAGAAATGAGCCATGTAAGTCCATATCA-GT-TATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
*
26644164 GACAGGAATGAGCCATGTAAGCCCATATTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
26644212 GACAGGAAT
1 GACAGGAAT
26644221 AATTAATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
46 27 0.54
47 1 0.02
48 22 0.44
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCATATCATATATATATGGCATTGGA
Found at i:26647544 original size:50 final size:50
Alignment explanation
Indices: 26647467--26647650 Score: 217
Period size: 50 Copynumber: 3.7 Consensus size: 50
26647457 TCACCATTTA
* * * *
26647467 TGGACAAGCCACCACTAATTTGAAGATAAACTGCTA-TTGAAAACACTTTG
1 TGGACAAGCCACCACTAATATGCAGATATACTGCTACTT-ATAACACTTTG
26647517 TGGACAAGCCACCACTAATATGCAGATATACTGCTACTTATAACACTTTG
1 TGGACAAGCCACCACTAATATGCAGATATACTGCTACTTATAACACTTTG
* * * * * *
26647567 TGGTCTAGCCACTACTGATATGCAGATATACTACCACTTATAACACTTTG
1 TGGACAAGCCACCACTAATATGCAGATATACTGCTACTTATAACACTTTG
* * * * *
26647617 TGGTCTAGCCACTACTGATATGCAGATGTACTGC
1 TGGACAAGCCACCACTAATATGCAGATATACTGC
26647651 CACATACTTC
Statistics
Matches: 121, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
50 119 0.98
51 2 0.02
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (50 bp):
TGGACAAGCCACCACTAATATGCAGATATACTGCTACTTATAACACTTTG
Found at i:26652703 original size:42 final size:42
Alignment explanation
Indices: 26652654--26652807 Score: 159
Period size: 42 Copynumber: 3.6 Consensus size: 42
26652644 TGAGACTATG
*
26652654 TGTAAGACCATATCTGGGATATGGCATCTG-TATGAGACTTCG
1 TGTAAGACCATATCTGGGATATGGCATC-GATATGAGACTTCA
* * * *
26652696 TGTAAGACCATATTTGGTATATGGCACCGATATGAGATTTCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTCA
* * * * *
26652738 TGTAAGTCCATAGCTGGGCTATTGACAACGATATGAGA-TTACA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGACTT-CA
* *
26652781 TGTAAGACCGTATCTGGGATATTGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
26652808 TGGTATGGTA
Statistics
Matches: 90, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
41 1 0.01
42 56 0.62
43 33 0.37
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTCA
Found at i:26656870 original size:48 final size:48
Alignment explanation
Indices: 26656802--26656934 Score: 212
Period size: 48 Copynumber: 2.8 Consensus size: 48
26656792 TACAAGATAA
* * *
26656802 ATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
26656850 ATATGTATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
26656898 ATATGTATATGTGGTAAAGTCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
26656935 TGTTGTAACA
Statistics
Matches: 78, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 78 1.00
ACGTcount: A:0.35, C:0.06, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
Found at i:26657029 original size:37 final size:37
Alignment explanation
Indices: 26656979--26657081 Score: 197
Period size: 37 Copynumber: 2.8 Consensus size: 37
26656969 GGAAATGTAT
26656979 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
26657016 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
26657053 TCCGGGTAAGACCCGATAACTACGTGTGG
1 TCCGGGTAAGACCCGATGACTACGTGTGG
26657082 GGACTATTCG
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.22, C:0.20, G:0.32, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:26658773 original size:35 final size:35
Alignment explanation
Indices: 26658726--26658852 Score: 200
Period size: 35 Copynumber: 3.6 Consensus size: 35
26658716 TCCTTATTGA
* *
26658726 AATACCATACCTACATTTCACAACTCAGTATGGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGTT
* *
26658761 GATACCATACCTACGTTTCACAACTCAGTATAGTT
1 AATACCATACCTACGTTTCACAACTCAGTATGGTT
* *
26658796 AATACCATACCAATGTTTCACAACTCAGTATGGTT
1 AATACCATACCTACGTTTCACAACTCAGTATGGTT
26658831 AATACCATACCTACGTTTCACA
1 AATACCATACCTACGTTTCACA
26658853 CTTTGCCATG
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 82 1.00
ACGTcount: A:0.35, C:0.26, G:0.09, T:0.30
Consensus pattern (35 bp):
AATACCATACCTACGTTTCACAACTCAGTATGGTT
Found at i:26665167 original size:42 final size:42
Alignment explanation
Indices: 26665072--26665154 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
26665062 AACACATGTG
*
26665072 TAGTACTATGTGCAGGCTACTATGTGTTTAAGACAGTTTTAA
1 TAGTACTATGTACAGGCTACTATGTGTTTAAGACAGTTTTAA
26665114 TAGTACTATGTACAGGCTACTATGTGTTTAAGACAGTTTTA
1 TAGTACTATGTACAGGCTACTATGTGTTTAAGACAGTTTTA
26665155 GGTCACGTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.29, C:0.12, G:0.20, T:0.39
Consensus pattern (42 bp):
TAGTACTATGTACAGGCTACTATGTGTTTAAGACAGTTTTAA
Found at i:26665337 original size:50 final size:49
Alignment explanation
Indices: 26665152--26665901 Score: 683
Period size: 50 Copynumber: 15.0 Consensus size: 49
26665142 TAAGACAGTT
* *
26665152 TTAGGTCACGTATGTAGTACTAA-TGCAGGCTACTACATGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TG
* * * * *
26665201 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-G
* * * **
26665251 TTTCGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATG
** * * * *
26665301 CTTAGGTCGTGTGTGTGGTACTAAGTGTAGGCTACTACGTGCACCGGATTG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TG
* * * * * * * * * *
26665352 ATAGGGCGCATGTGTAGTTCTAACTGCAGGCTAATATGCGTACCCGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-G
* * * * *
26665402 TTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACAACATGTATCAGATGG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-G
* * * *
26665453 TCAGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTAACGGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TG
* * * ** *
26665503 ATAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCATACCTGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-G
* * * *
26665553 TTTCGATCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATG
* * *
26665603 CTTAGGTCACGTGTTTAGTACTAAGTGCAGGCTATTACGTGTAGCAGATTG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TG
* * * * * * * * *
26665654 ATAGGTCGCATGTGTAGTAATAATTGTAGGCTACTATGCGTACCCGATAG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-G
* * * *
26665704 TTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTAAGTGTATCAGATGG
1 -TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-G
*
26665755 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-G
* *
26665805 ATATGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTG
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TG
* * * * * *
26665855 ATAGGTCGCATGCGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA
26665902 GAGCTTCGGT
Statistics
Matches: 563, Mismatches: 125, Indels: 25
0.79 0.18 0.04
Matches are distributed among these distances:
49 24 0.04
50 382 0.68
51 157 0.28
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATG
Found at i:26665380 original size:151 final size:151
Alignment explanation
Indices: 26665152--26665890 Score: 1032
Period size: 151 Copynumber: 4.9 Consensus size: 151
26665142 TAAGACAGTT
* * *
26665152 TTAGGTCACGTATGTAGTACTAA-TGCAGGCTACTACATGTACCAGATTGTTAGGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
26665216 AGTACTAAGTGCAGGCTACTATGCGTACCCGATAGTTTCGATCACATGTGTAGTACTAAGTGCAG
66 AGTACTAAGTGCAGGCTACTATGCGTACCCGATAGTTTCGATCACATGTGTAGTACTAAGTGCAG
*
26665281 GCTACTACGTGTATTAGATGC
131 GCTACTACGTGTATCAGATGC
** * * * * *
26665302 TTAGGTCGTGTGTGTGGTACTAAGTGTAGGCTACTACGTGCACCGGATTGATAGGGCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
* * * *
26665367 AGTTCTAACTGCAGGCTAATATGCGTACCCGATAGTTTCGATCACGTGTGTAGTACTAAGTGCAG
66 AGTACTAAGTGCAGGCTACTATGCGTACCCGATAGTTTCGATCACATGTGTAGTACTAAGTGCAG
* * *
26665432 GCTACAACATGTATCAGATGG
131 GCTACTACGTGTATCAGATGC
* * * * *
26665453 TCAGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTAACGGATTGATAGGTCACATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
* *
26665518 AGTACTAAGTGCAGGCTACTATGCATACCTGATAGTTTCGATCACATGTGTAGTACTAAGTGCAG
66 AGTACTAAGTGCAGGCTACTATGCGTACCCGATAGTTTCGATCACATGTGTAGTACTAAGTGCAG
26665583 GCTACTACGTGTATCAGATGC
131 GCTACTACGTGTATCAGATGC
* * *
26665604 TTAGGTCACGTGTTTAGTACTAAGTGCAGGCTATTACGTGTAGCAGATTGATAGGTCGCATGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
* * * *
26665669 AGTAATAATTGTAGGCTACTATGCGTACCCGATAGTTTCGATCACGTGTGTAGTACTAAGTGCAG
66 AGTACTAAGTGCAGGCTACTATGCGTACCCGATAGTTTCGATCACATGTGTAGTACTAAGTGCAG
* *
26665734 GCTACTAAGTGTATCAGATGG
131 GCTACTACGTGTATCAGATGC
* * * * *
26665755 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGATATGTCACGTGTGT
1 TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
* * * * * * * * *
26665820 AGTACTAAGTGCAGGCTACTACGTGTACCAGATTG-ATAGGTCGCATGCGTAGTACTAAGTGCAG
66 AGTACTAAGTGCAGGCTACTATGCGTACCCGATAGTTTCGATCACATGTGTAGTACTAAGTGCAG
26665884 GCTACTA
131 GCTACTA
26665891 TGCGTACCAG
Statistics
Matches: 516, Mismatches: 72, Indels: 2
0.87 0.12 0.00
Matches are distributed among these distances:
150 49 0.09
151 467 0.91
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (151 bp):
TTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGATAGGTCGCATGTGT
AGTACTAAGTGCAGGCTACTATGCGTACCCGATAGTTTCGATCACATGTGTAGTACTAAGTGCAG
GCTACTACGTGTATCAGATGC
Found at i:26667386 original size:44 final size:44
Alignment explanation
Indices: 26667321--26667405 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
26667311 TTGATATCTC
* *
26667321 AAAGTCCATGGTTGTACCATGGAAATTAAGGAAGAATTGACGGA
1 AAAGTCCATGGTTATAACATGGAAATTAAGGAAGAATTGACGGA
* * *
26667365 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGAC
1 AAAGTCCATGGTT-ATAACATGGAAATTAAGGAAGAATTGAC
26667406 AGTAAGGATA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
43 3 0.09
44 32 0.91
ACGTcount: A:0.38, C:0.13, G:0.25, T:0.25
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGAAATTAAGGAAGAATTGACGGA
Found at i:26667607 original size:47 final size:47
Alignment explanation
Indices: 26667543--26667664 Score: 217
Period size: 47 Copynumber: 2.6 Consensus size: 47
26667533 GCATTGGCAC
*
26667543 TAAGACAAGGATGCCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
26667590 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
1 TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
* *
26667637 TAAGATAAGGATATCATGTAAGACCATG
1 TAAGACAAGGATACCATGTAAGACCATG
26667665 CCAAGGCATG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.25
Consensus pattern (47 bp):
TAAGACAAGGATACCATGTAAGACCATGTTTGGAACATGGCATTTGG
Found at i:26667707 original size:54 final size:53
Alignment explanation
Indices: 26667643--26667839 Score: 207
Period size: 54 Copynumber: 3.7 Consensus size: 53
26667633 TTGGTAAGAT
* * * *
26667643 AAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAACTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTC-ATAAGGC
* * * * *
26667697 AAGGAAATCATGTAAGACCATGTCAAGACATGTCATTGATGAGTTACCATAAGGAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT--CATAAGG-C
* * * * *
26667753 AAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTACATAAAGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCATAAGGC
* *
26667805 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
26667840 ATGGTAAGTT
Statistics
Matches: 118, Mismatches: 21, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
52 4 0.03
53 32 0.27
54 39 0.33
55 38 0.32
56 5 0.04
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCATAAGGC
Found at i:26667772 original size:55 final size:53
Alignment explanation
Indices: 26667638--26667839 Score: 190
Period size: 55 Copynumber: 3.7 Consensus size: 53
26667628 GGCATTTGGT
* * * * * *
26667638 AAGATAAGGATATCATGTAAGACCATGCCAAGGCATGGCATTGATAACTTCTATA
1 AAGA-AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTAC-ATA
* * * * *
26667693 AGGCAAGGAAATCATGTAAGACCATGTCAAGACATGTCATTGATGAGTTACCATA
1 AAGAAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAG-TA-CATA
* * * * *
26667748 AGGAAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTACATA
1 AAG-AAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTACATA
* *
26667801 AAGCAAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGAAAGGATACCATGTAAGACCATGTCAAGACATGGCA
26667840 ATGGTAAGTT
Statistics
Matches: 120, Mismatches: 23, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
52 4 0.03
53 32 0.27
54 39 0.32
55 40 0.33
56 5 0.04
ACGTcount: A:0.38, C:0.18, G:0.23, T:0.21
Consensus pattern (53 bp):
AAGAAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTACATA
Found at i:26670180 original size:180 final size:181
Alignment explanation
Indices: 26669925--26670281 Score: 542
Period size: 180 Copynumber: 2.0 Consensus size: 181
26669915 CCGAGATCTG
* * *
26669925 TACCATGAGATAAATAATTTTTAGTGAAGAAAGATTAGAACTGTTGGACAGTGAAACAGGAGTAA
1 TACCATGAGATAAATAATTTATAGTGAAGAAAGATGAGAACTATTGGACAGTGAAACAGGAGTAA
* * *
26669990 CTTTAATGAATAAACTGTACTAATT-GACTAAACC-AAAAATTCTGAAAA-GTTTATGGTAAGAA
66 ATTTAATGAATAAAATGTACTAATTGGA-TAAACCAAAAAATTATGAAAATG-TTATGGTAAGAA
* * *
26670052 TATATGTGAGTCTAGTTTCTGGGAAAATTAATGGTTCTTAATTTGGAGTCCAA
129 TATATGTGAGTCTAGTTTCTGGAAAAATTAACGGATCTTAATTTGGAGTCCAA
* * * *
26670105 TACCATGAGATAAATAATTTATAGTGAAGAGAGGTCGA-AACTATTGGACAGTGAAATAGGGGTA
1 TACCATGAGATAAATAATTTATAGTGAAGAAAGAT-GAGAACTATTGGACAGTGAAACAGGAGTA
26670169 AATTTAATGAATAAAATGTACTAATTGGATAAACCAAAAAATTATGAAAATGTTATGGTAAGAAT
65 AATTTAATGAATAAAATGTACTAATTGGATAAACCAAAAAATTATGAAAATGTTATGGTAAGAAT
26670234 ATATGTGAGTCTAGTTTCTGGAAAAATTAACGGATCTTAATTTGGAGT
130 ATATGTGAGTCTAGTTTCTGGAAAAATTAACGGATCTTAATTTGGAGT
26670282 TCTATAGCTC
Statistics
Matches: 160, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
180 85 0.53
181 74 0.46
182 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.20, T:0.31
Consensus pattern (181 bp):
TACCATGAGATAAATAATTTATAGTGAAGAAAGATGAGAACTATTGGACAGTGAAACAGGAGTAA
ATTTAATGAATAAAATGTACTAATTGGATAAACCAAAAAATTATGAAAATGTTATGGTAAGAATA
TATGTGAGTCTAGTTTCTGGAAAAATTAACGGATCTTAATTTGGAGTCCAA
Found at i:26673204 original size:35 final size:35
Alignment explanation
Indices: 26673158--26673303 Score: 238
Period size: 35 Copynumber: 4.2 Consensus size: 35
26673148 ATAGCTACAC
*
26673158 TTCACAACTCAGTATGGATGATACCATACCTACGT
1 TTCACAACTCAGTATGGATAATACCATACCTACGT
* *
26673193 TTCACAACTCAGTATGGTTAATACCATACCTATGT
1 TTCACAACTCAGTATGGATAATACCATACCTACGT
*
26673228 TTCACAACTCAGTATGGATGATACCATACCTACGT
1 TTCACAACTCAGTATGGATAATACCATACCTACGT
* *
26673263 TTCACAACTCAGTATGGTTAATACCATACCTACAT
1 TTCACAACTCAGTATGGATAATACCATACCTACGT
26673298 TTCACA
1 TTCACA
26673304 CTTTTCCATG
Statistics
Matches: 102, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 102 1.00
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.31
Consensus pattern (35 bp):
TTCACAACTCAGTATGGATAATACCATACCTACGT
Found at i:26673316 original size:70 final size:70
Alignment explanation
Indices: 26673142--26673303 Score: 279
Period size: 70 Copynumber: 2.3 Consensus size: 70
26673132 TCCTCATTGA
* * *
26673142 AATACTATAGCTACACTTCACAACTCAGTATGGATGATACCATACCTACGTTTCACAACTCAGTA
1 AATACCATACCTACATTTCACAACTCAGTATGGATGATACCATACCTACGTTTCACAACTCAGTA
26673207 TGGTT
66 TGGTT
**
26673212 AATACCATACCTATGTTTCACAACTCAGTATGGATGATACCATACCTACGTTTCACAACTCAGTA
1 AATACCATACCTACATTTCACAACTCAGTATGGATGATACCATACCTACGTTTCACAACTCAGTA
26673277 TGGTT
66 TGGTT
26673282 AATACCATACCTACATTTCACA
1 AATACCATACCTACATTTCACA
26673304 CTTTTCCATG
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
70 85 1.00
ACGTcount: A:0.33, C:0.25, G:0.11, T:0.30
Consensus pattern (70 bp):
AATACCATACCTACATTTCACAACTCAGTATGGATGATACCATACCTACGTTTCACAACTCAGTA
TGGTT
Found at i:26688890 original size:16 final size:17
Alignment explanation
Indices: 26688869--26688906 Score: 69
Period size: 16 Copynumber: 2.3 Consensus size: 17
26688859 ATTCTCATTT
26688869 TTTTTCATTTTCT-TCC
1 TTTTTCATTTTCTCTCC
26688885 TTTTTCATTTTCTCTCC
1 TTTTTCATTTTCTCTCC
26688902 TTTTT
1 TTTTT
26688907 GAAAAACAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 13 0.62
17 8 0.38
ACGTcount: A:0.05, C:0.24, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTTCATTTTCTCTCC
Found at i:26690585 original size:22 final size:22
Alignment explanation
Indices: 26690537--26690581 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
26690527 ATTATGATGA
26690537 TTGATATGTTGAGATTGATATT
1 TTGATATGTTGAGATTGATATT
26690559 TTGATATGTATG-GATT-ATATT
1 TTGATATGT-TGAGATTGATATT
26690580 TT
1 TT
26690582 TGATGATCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 7 0.32
22 13 0.59
23 2 0.09
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.53
Consensus pattern (22 bp):
TTGATATGTTGAGATTGATATT
Found at i:26699622 original size:25 final size:26
Alignment explanation
Indices: 26699575--26699634 Score: 70
Period size: 25 Copynumber: 2.3 Consensus size: 26
26699565 TTTAATTAAA
* *
26699575 TAAAAATTACTAATGATTCAAT-AAAT
1 TAAAAATTAC-AATAATTAAATAAAAT
26699601 TGAAAAATTA-AATAATTAAATAAAAT
1 T-AAAAATTACAATAATTAAATAAAAT
26699627 TAAAAATT
1 TAAAAATT
26699635 TAGGAGAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
25 16 0.53
26 6 0.20
27 8 0.27
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.33
Consensus pattern (26 bp):
TAAAAATTACAATAATTAAATAAAAT
Found at i:26699758 original size:40 final size:40
Alignment explanation
Indices: 26699699--26699778 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
26699689 GTTAGAAAGC
*
26699699 AAAAGAGGTTAAATGGAAGTAGGTTGGAGGATTTGGCTAA
1 AAAAGAGGTTAAATAGAAGTAGGTTGGAGGATTTGGCTAA
26699739 AAAAGAGGTTAAATAGAAGTAGGTTGGAGGATTTGGCTAA
1 AAAAGAGGTTAAATAGAAGTAGGTTGGAGGATTTGGCTAA
26699779 GGATGGGTGA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.39, C:0.03, G:0.34, T:0.25
Consensus pattern (40 bp):
AAAAGAGGTTAAATAGAAGTAGGTTGGAGGATTTGGCTAA
Found at i:26700296 original size:17 final size:18
Alignment explanation
Indices: 26700269--26700302 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
26700259 AATTAAATAT
26700269 ATGCATATTAATTTATTA
1 ATGCATATTAATTTATTA
26700287 ATGC-TATTAATTTATT
1 ATGCATATTAATTTATT
26700303 TAAAAATAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (18 bp):
ATGCATATTAATTTATTA
Found at i:26703977 original size:38 final size:38
Alignment explanation
Indices: 26703921--26703994 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
26703911 TAAGTATTCA
**
26703921 TCCTCCTCTTCCTTATTCGGAGGATCTGATGTCAAATT
1 TCCTCCTCTTCCCCATTCGGAGGATCTGATGTCAAATT
26703959 TCCTCCTCTTCCCCATTCGGAGGATCTGATGTCAAA
1 TCCTCCTCTTCCCCATTCGGAGGATCTGATGTCAAA
26703995 ATTTGTTCCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.35
Consensus pattern (38 bp):
TCCTCCTCTTCCCCATTCGGAGGATCTGATGTCAAATT
Found at i:26707431 original size:27 final size:27
Alignment explanation
Indices: 26707401--26707462 Score: 83
Period size: 26 Copynumber: 2.3 Consensus size: 27
26707391 ATGTACTAAA
*
26707401 ATACCCCTAAGTATG-AAAATTACCATT
1 ATACCCCTAAG-ATGCAAAATGACCATT
*
26707428 ATACCCCT-AGGTGCAAAATGACCATT
1 ATACCCCTAAGATGCAAAATGACCATT
26707454 ATACCCCTA
1 ATACCCCTA
26707463 GAGTTAATTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 2 0.06
26 21 0.68
27 8 0.26
ACGTcount: A:0.37, C:0.27, G:0.10, T:0.26
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATGACCATT
Found at i:26707607 original size:28 final size:28
Alignment explanation
Indices: 26707567--26707704 Score: 174
Period size: 28 Copynumber: 5.0 Consensus size: 28
26707557 GGAGGAAGCG
26707567 TTCTGGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
* *
26707595 TTCTAGTGGCTATGCCACAAATATCTAT
1 TTCTGGTGGCTATGCCACAAATATCTGT
*
26707623 TTCTGGTGGCTATGGCACAAATATCTG-
1 TTCTGGTGGCTATGCCACAAATATCTGT
* *
26707650 TTCCGGTGGCTTTGCCAC-AATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
* * * *
26707677 ATCTGGTGACTCTGTCAC-AATATCTGT
1 TTCTGGTGGCTATGCCACAAATATCTGT
26707704 T
1 T
26707705 CTAGAAGCCA
Statistics
Matches: 95, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.08
27 37 0.39
28 50 0.53
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACAAATATCTGT
Done.