Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 85 of 295
Found at i:26710435 original size:40 final size:40
Alignment explanation
Indices: 26710380--26710524 Score: 256
Period size: 40 Copynumber: 3.6 Consensus size: 40
26710370 CGGATGATAA
26710380 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
26710420 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
26710460 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
26710500 CCGGGCTAAGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
26710525 AGCAAGTAGT
Statistics
Matches: 102, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
40 101 0.99
41 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:26710824 original size:22 final size:21
Alignment explanation
Indices: 26710783--26710826 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
26710773 GAATGTGCGT
26710783 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
26710805 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
26710827 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:26718969 original size:43 final size:43
Alignment explanation
Indices: 26718811--26718971 Score: 141
Period size: 43 Copynumber: 3.7 Consensus size: 43
26718801 TATGTGTTAT
* *
26718811 CGTGTAAGACCACGTCTGGGACGTTGGCA-TCA-ACTTATGATTTA
1 CGTGTAAGACCACGTCTGAGACGTTGGCATTGATA-TT-TGA-TTA
* * * * *
26718855 CGTGTAAGACCTCATCTGAGACGTTGGCATCG-TATCTGATTT
1 CGTGTAAGACCACGTCTGAGACGTTGGCATTGATATTTGATTA
** **
26718897 CGTGTAAGACCTTGTCT-ATGACGGAGGCATTGATATTTGATTA
1 CGTGTAAGACCACGTCTGA-GACGTTGGCATTGATATTTGATTA
* *
26718940 CATGTAAGACCACCTCTGAGACGTTGGCATTG
1 CGTGTAAGACCACGTCTGAGACGTTGGCATTG
26718972 TACGAGCTTT
Statistics
Matches: 92, Mismatches: 20, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
41 1 0.01
42 27 0.29
43 35 0.38
44 28 0.30
45 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGAGACGTTGGCATTGATATTTGATTA
Found at i:26720898 original size:51 final size:52
Alignment explanation
Indices: 26720794--26720936 Score: 146
Period size: 51 Copynumber: 2.8 Consensus size: 52
26720784 GTAGTCAAAA
* * * * *
26720794 CTATCTTCTTCACAAAGTGGCCTTCACATTGTACCAAAC-TTCTGAACCAAG
1 CTATCTTCTACACATAGTGGCCTGCACTTTGTACCACACATTCTGAACCAAG
* **
26720845 CTATCTTCTACACATAGTGGCCTGCACTTTGTACCACACATT-TGATCGTAG
1 CTATCTTCTACACATAGTGGCCTGCACTTTGTACCACACATTCTGAACCAAG
*** * * *
26720896 CTATCGGGTACACATAGTAGCCTGCACTTAGTACTACACAT
1 CTATCTTCTACACATAGTGGCCTGCACTTTGTACCACACAT
26720937 GCGACCTAAC
Statistics
Matches: 77, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
51 75 0.97
52 2 0.03
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (52 bp):
CTATCTTCTACACATAGTGGCCTGCACTTTGTACCACACATTCTGAACCAAG
Found at i:26721035 original size:52 final size:49
Alignment explanation
Indices: 26720905--26721037 Score: 135
Period size: 52 Copynumber: 2.6 Consensus size: 49
26720895 GCTATCGGGT
*
26720905 ACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCAAG
1 ACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCAAG
* * * * *
26720954 TACACGTAGTGGCCTACACTTAGTACTACACACGTGA-CTGAAAACCATTTTAA-
1 -ACACATAGTAGCCTGCACTTAGTACTACACACGCGACCT---AACCA--TCAAG
*
26721007 ACACATAGTAGCCTGCACATAGTACTACACA
1 ACACATAGTAGCCTGCACTTAGTACTACACA
26721038 TGTTTTCTCA
Statistics
Matches: 68, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
49 2 0.03
50 31 0.46
52 32 0.47
54 3 0.04
ACGTcount: A:0.35, C:0.28, G:0.14, T:0.23
Consensus pattern (49 bp):
ACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCAAG
Found at i:26730106 original size:46 final size:46
Alignment explanation
Indices: 26730049--26730216 Score: 180
Period size: 46 Copynumber: 3.6 Consensus size: 46
26730039 TATTTGGGCA
26730049 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAGCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAGCG
* * * * *
26730095 TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATG---CGA-GCG
* * *
26730142 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAGCG
* * *
26730188 CCCGAGCTCTTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
26730217 GCTTATGGGC
Statistics
Matches: 101, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
43 4 0.04
45 2 0.02
46 58 0.57
47 31 0.31
48 2 0.02
50 4 0.04
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAGCG
Found at i:26730204 original size:93 final size:93
Alignment explanation
Indices: 26730045--26730217 Score: 283
Period size: 93 Copynumber: 1.9 Consensus size: 93
26730035 GGGATATTTG
* *
26730045 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAGCGTCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCAAACTCGTTGAG
26730110 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * * *
26730138 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCTTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCAAACTCGTTGAG
26730203 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
26730218 CTTATGGGCG
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCAAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:26732360 original size:60 final size:60
Alignment explanation
Indices: 26732267--26732404 Score: 224
Period size: 60 Copynumber: 2.3 Consensus size: 60
26732257 TAGGGTCTGA
* *
26732267 ATTTAGCCTAGACTGGTATTTCAGATTCGAGCTCATT-AAGGTTGTTTGTCACTATAAAGG
1 ATTTAGCCTGGACTGGTATTTCAGATCCGAGCTCATTAAAGG-TGTTTGTCACTATAAAGG
* *
26732327 ATTTAGCCTGGACTGGTATTTCAGATCCGAGCTCATTAAAGGTGTTTGTCGCTATAAGGG
1 ATTTAGCCTGGACTGGTATTTCAGATCCGAGCTCATTAAAGGTGTTTGTCACTATAAAGG
26732387 ATTTAGCCTGGACTGGTA
1 ATTTAGCCTGGACTGGTA
26732405 ATTCCGACAT
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
60 69 0.95
61 4 0.05
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.35
Consensus pattern (60 bp):
ATTTAGCCTGGACTGGTATTTCAGATCCGAGCTCATTAAAGGTGTTTGTCACTATAAAGG
Found at i:26734995 original size:13 final size:13
Alignment explanation
Indices: 26734979--26735057 Score: 104
Period size: 13 Copynumber: 6.1 Consensus size: 13
26734969 TTTAAACCAA
*
26734979 ACTTTTCAAAAGT
1 ACTTTTCAAAAGC
*
26734992 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
*
26735005 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
* *
26735018 ACTTTTCCACAGC
1 ACTTTTCAAAAGC
26735031 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
26735044 ACTTTGCAAAAGC
1 ACTTTTCAAAAGC
26735057 A
1 A
26735058 TTGCCAAACT
Statistics
Matches: 58, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 58 1.00
ACGTcount: A:0.37, C:0.27, G:0.09, T:0.28
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:26735694 original size:42 final size:42
Alignment explanation
Indices: 26735632--26735759 Score: 107
Period size: 43 Copynumber: 3.0 Consensus size: 42
26735622 ACATAGGATC
*
26735632 CGATATGTG-TTATCATGTAAGACAACGTCTGGGACATTGGCAT
1 CGATATTTGATTA-CATGTAAGAC-ACGTCTGGGACATTGGCAT
* * * ****
26735675 C-ATATTTGATTTCGTGTAAGACCCTGTCTGGGACAGACACAT
1 CGATATTTGATTACATGTAAGACAC-GTCTGGGACATTGGCAT
* * *
26735717 CGATATTTGATTACATGTAAGACCATGTTTGGGACGTTGGCAT
1 CGATATTTGATTACATGTAAGA-CACGTCTGGGACATTGGCAT
26735760 TGTACAAGCT
Statistics
Matches: 63, Mismatches: 18, Indels: 8
0.71 0.20 0.09
Matches are distributed among these distances:
41 1 0.02
42 29 0.46
43 32 0.51
44 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (42 bp):
CGATATTTGATTACATGTAAGACACGTCTGGGACATTGGCAT
Found at i:26739015 original size:23 final size:23
Alignment explanation
Indices: 26738970--26739017 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
26738960 TTCAGAGAGA
26738970 AATGCCATGTCTATACAGACCAT
1 AATGCCATGTCTATACAGACCAT
26738993 AATGCCATGTCTATACAGACCAT
1 AATGCCATGTCTATACAGACCAT
26739016 AA
1 AA
26739018 AAGTCTTAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.25, G:0.12, T:0.25
Consensus pattern (23 bp):
AATGCCATGTCTATACAGACCAT
Found at i:26753291 original size:28 final size:28
Alignment explanation
Indices: 26753258--26753312 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
26753248 ACGGGTGACC
26753258 ACACGGGC-GTGTCTAGGCCGTGTGAAGG
1 ACACGGGCAGTGT-TAGGCCGTGTGAAGG
*
26753286 ACACGGGCATGTGTTTGGCCGTGTGAA
1 ACACGGGCA-GTGTTAGGCCGTGTGAA
26753313 AACCCCTGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 8 0.33
29 12 0.50
30 4 0.17
ACGTcount: A:0.18, C:0.20, G:0.40, T:0.22
Consensus pattern (28 bp):
ACACGGGCAGTGTTAGGCCGTGTGAAGG
Found at i:26755910 original size:47 final size:48
Alignment explanation
Indices: 26755838--26755969 Score: 132
Period size: 47 Copynumber: 2.8 Consensus size: 48
26755828 CATAGGGTAT
*
26755838 AATGCCGATGCCATGTCCCAGACAT-GTTTTACACTAGCTCTCATCTC
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTC
* * * *
26755885 AATGCCGATGCCATGTCCTATACATGGTCTTGCACTGGCTCTCA--T-
1 AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTC
* *
26755930 AATGTGGTCGATG-CATGTCCCAGACAT-GTCTTACAATAGC
1 AA--T-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGC
26755970 ACACACACAT
Statistics
Matches: 70, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
45 2 0.03
46 11 0.16
47 36 0.51
48 21 0.30
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (48 bp):
AATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTC
Found at i:26759884 original size:3 final size:3
Alignment explanation
Indices: 26759878--26759910 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
26759868 AACCACCACC
26759878 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
26759911 TTCATATATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:26765134 original size:18 final size:18
Alignment explanation
Indices: 26765111--26765147 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
26765101 TACTTCTAAG
26765111 AAGCACTTTTGAGACAAA
1 AAGCACTTTTGAGACAAA
26765129 AAGCACTTTTGAGACAAA
1 AAGCACTTTTGAGACAAA
26765147 A
1 A
26765148 GTATTCCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.16, G:0.16, T:0.22
Consensus pattern (18 bp):
AAGCACTTTTGAGACAAA
Found at i:26768298 original size:20 final size:20
Alignment explanation
Indices: 26768275--26768328 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 20
26768265 GTACTGACAA
**
26768275 CTTGTCTGCAATACTGGTGG
1 CTTGTCTGCAATACTGGCCG
*
26768295 CTTGTC-ACAATACTGGCCG
1 CTTGTCTGCAATACTGGCCG
26768314 CTTGTCTGCAATACT
1 CTTGTCTGCAATACT
26768329 AGCACTTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 16 0.55
20 13 0.45
ACGTcount: A:0.19, C:0.26, G:0.22, T:0.33
Consensus pattern (20 bp):
CTTGTCTGCAATACTGGCCG
Found at i:26768418 original size:40 final size:40
Alignment explanation
Indices: 26768381--26768468 Score: 131
Period size: 40 Copynumber: 2.2 Consensus size: 40
26768371 CAACTTGTAT
** *
26768381 ACAATACTAACAATTTATTTGCATTTCTGGTGGCTTGTCC
1 ACAATACTAACAATTTATTTGCATAACTGGTAGCTTGTCC
* *
26768421 ACAATACTAGCAGTTTATTTGCATAACTGGTAGCTTGTCC
1 ACAATACTAACAATTTATTTGCATAACTGGTAGCTTGTCC
26768461 ACAATACT
1 ACAATACT
26768469 GGCAGCTTGA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.36
Consensus pattern (40 bp):
ACAATACTAACAATTTATTTGCATAACTGGTAGCTTGTCC
Found at i:26768483 original size:40 final size:40
Alignment explanation
Indices: 26768381--26768480 Score: 119
Period size: 40 Copynumber: 2.5 Consensus size: 40
26768371 CAACTTGTAT
* * * ** *
26768381 ACAATACTAACAATTTATTTGCATTTCTGGTGGCTTGTCC
1 ACAATACTAGCAGTTGATTTGCATAACTGGTAGCTTGTCC
*
26768421 ACAATACTAGCAGTTTATTTGCATAACTGGTAGCTTGTCC
1 ACAATACTAGCAGTTGATTTGCATAACTGGTAGCTTGTCC
*
26768461 ACAATACTGGCAGCTTGATT
1 ACAATACTAGCAG-TTGATT
26768481 GCAATATTGG
Statistics
Matches: 52, Mismatches: 7, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
40 47 0.90
41 5 0.10
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (40 bp):
ACAATACTAGCAGTTGATTTGCATAACTGGTAGCTTGTCC
Found at i:26772199 original size:15 final size:15
Alignment explanation
Indices: 26772175--26772204 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26772165 ACTAATGTAT
26772175 TTTTGAGGTTTCGGC
1 TTTTGAGGTTTCGGC
*
26772190 TTTTGTGGTTTCGGC
1 TTTTGAGGTTTCGGC
26772205 ACAAGTGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.13, G:0.33, T:0.50
Consensus pattern (15 bp):
TTTTGAGGTTTCGGC
Found at i:26781314 original size:21 final size:21
Alignment explanation
Indices: 26781290--26781330 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26781280 GCCTAGGAAT
*
26781290 TGAATTGAATTAAATTGATAA
1 TGAAATGAATTAAATTGATAA
*
26781311 TGAAATGGATTAAATTGATA
1 TGAAATGAATTAAATTGATA
26781331 TTAAATTCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.17, T:0.37
Consensus pattern (21 bp):
TGAAATGAATTAAATTGATAA
Found at i:26781846 original size:25 final size:24
Alignment explanation
Indices: 26781810--26781862 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 24
26781800 CACAAACGCA
26781810 GCTCTTTATGAG-TGTCCTGATATAG
1 GCTCTTTATGAGCT-TCCTGATAT-G
*
26781835 GCTCTTTTTGAGCTTCCTGATATG
1 GCTCTTTATGAGCTTCCTGATATG
26781859 GCTC
1 GCTC
26781863 ACTTGAACTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 5 0.19
25 20 0.77
26 1 0.04
ACGTcount: A:0.15, C:0.21, G:0.23, T:0.42
Consensus pattern (24 bp):
GCTCTTTATGAGCTTCCTGATATG
Found at i:26781873 original size:23 final size:25
Alignment explanation
Indices: 26781824--26781874 Score: 61
Period size: 23 Copynumber: 2.1 Consensus size: 25
26781814 TTTATGAGTG
** *
26781824 TCCTGATATAGGCTCTTTTTGAGCT
1 TCCTGATATAGGCTCTACTTGAACT
26781849 TCCTGATAT-GGCTC-ACTTGAACT
1 TCCTGATATAGGCTCTACTTGAACT
26781872 TCC
1 TCC
26781875 AGTTATATGG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 9 0.39
24 5 0.22
25 9 0.39
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.39
Consensus pattern (25 bp):
TCCTGATATAGGCTCTACTTGAACT
Found at i:26783167 original size:21 final size:21
Alignment explanation
Indices: 26783132--26783173 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
26783122 CCTAGCACAC
**
26783132 GAGTGTGTGGTTGGCCGTCTT
1 GAGTGTGTGCCTGGCCGTCTT
*
26783153 GAGTGTGTGCCTGGCTGTCTT
1 GAGTGTGTGCCTGGCCGTCTT
26783174 ACCCAAGTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.05, C:0.17, G:0.40, T:0.38
Consensus pattern (21 bp):
GAGTGTGTGCCTGGCCGTCTT
Found at i:26783370 original size:20 final size:19
Alignment explanation
Indices: 26783326--26783375 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
26783316 CTGCACCTAA
*
26783326 GAAAAATTTTTAAATTGTG
1 GAAAAATTTTAAAATTGTG
*
26783345 GAAAAAATTTTAAAATTTTG
1 G-AAAAATTTTAAAATTGTG
*
26783365 CGAAAACTTTT
1 -GAAAAATTTT
26783376 CTGAGTTTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 1 0.04
20 24 0.92
21 1 0.04
ACGTcount: A:0.44, C:0.04, G:0.12, T:0.40
Consensus pattern (19 bp):
GAAAAATTTTAAAATTGTG
Found at i:26787371 original size:19 final size:19
Alignment explanation
Indices: 26787347--26787412 Score: 73
Period size: 19 Copynumber: 3.6 Consensus size: 19
26787337 CACATGCACT
26787347 AACCAATCCAAGACATTAA
1 AACCAATCCAAGACATTAA
* **
26787366 AACCAAACCAA-A-ACCAA
1 AACCAATCCAAGACATTAA
*
26787383 CACCAATCCAAGACATTAA
1 AACCAATCCAAGACATTAA
*
26787402 AACCAAGCCAA
1 AACCAATCCAA
26787413 AACCAATCTT
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
17 12 0.33
18 2 0.06
19 22 0.61
ACGTcount: A:0.55, C:0.32, G:0.05, T:0.09
Consensus pattern (19 bp):
AACCAATCCAAGACATTAA
Found at i:26787395 original size:36 final size:36
Alignment explanation
Indices: 26787348--26787418 Score: 133
Period size: 36 Copynumber: 2.0 Consensus size: 36
26787338 ACATGCACTA
26787348 ACCAATCCAAGACATTAAAACCAAACCAAAACCAAC
1 ACCAATCCAAGACATTAAAACCAAACCAAAACCAAC
*
26787384 ACCAATCCAAGACATTAAAACCAAGCCAAAACCAA
1 ACCAATCCAAGACATTAAAACCAAACCAAAACCAA
26787419 TCTTATTCAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.55, C:0.32, G:0.04, T:0.08
Consensus pattern (36 bp):
ACCAATCCAAGACATTAAAACCAAACCAAAACCAAC
Found at i:26788336 original size:23 final size:25
Alignment explanation
Indices: 26788319--26788371 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
26788309 AAGTTCAAGC
26788319 GAGCC-ATATCAGGAAGTTCACAAA
1 GAGCCTATATCAGGAAGTTCACAAA
* * *
26788343 GAGCCTATATCAGGACGCTCATAAA
1 GAGCCTATATCAGGAAGTTCACAAA
26788368 GAGC
1 GAGC
26788372 TGCTGTATGT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (25 bp):
GAGCCTATATCAGGAAGTTCACAAA
Found at i:26793779 original size:25 final size:25
Alignment explanation
Indices: 26793745--26793795 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
26793735 CCGTAGTTGA
26793745 TAATAACCAGAACGAAGATCTATCT
1 TAATAACCAGAACGAAGATCTATCT
26793770 TAATAACCAGAACGAAGATCTATCT
1 TAATAACCAGAACGAAGATCTATCT
26793795 T
1 T
26793796 CGAGAATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.43, C:0.20, G:0.12, T:0.25
Consensus pattern (25 bp):
TAATAACCAGAACGAAGATCTATCT
Found at i:26794253 original size:21 final size:21
Alignment explanation
Indices: 26794227--26794282 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
26794217 AACAGCGGTG
*
26794227 GCGGTGAGATTAGTTACAGTA
1 GCGGTGAGATTAGATACAGTA
* *
26794248 GCGGTGAGATTGGATACTGTA
1 GCGGTGAGATTAGATACAGTA
26794269 GCGGTGAGATTAGA
1 GCGGTGAGATTAGA
26794283 AACAATGGTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.27, C:0.09, G:0.38, T:0.27
Consensus pattern (21 bp):
GCGGTGAGATTAGATACAGTA
Found at i:26797834 original size:32 final size:32
Alignment explanation
Indices: 26797794--26797914 Score: 188
Period size: 32 Copynumber: 3.8 Consensus size: 32
26797784 AAAAAATATG
*
26797794 ATACATTAGGTTTACGTATAAAAAAGTAGATC
1 ATACATTAGGTTTACATATAAAAAAGTAGATC
* * *
26797826 ATACATTAGTTTTGCATATAAAAAAGTAGATA
1 ATACATTAGGTTTACATATAAAAAAGTAGATC
*
26797858 ATACATTAGGTTCACATATAAAAAAGTAGATC
1 ATACATTAGGTTTACATATAAAAAAGTAGATC
*
26797890 ATACATTAGTTTTACATATAAAAAA
1 ATACATTAGGTTTACATATAAAAAA
26797915 CTAGCATAGT
Statistics
Matches: 79, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 79 1.00
ACGTcount: A:0.47, C:0.09, G:0.12, T:0.32
Consensus pattern (32 bp):
ATACATTAGGTTTACATATAAAAAAGTAGATC
Found at i:26797879 original size:64 final size:64
Alignment explanation
Indices: 26797794--26797914 Score: 215
Period size: 64 Copynumber: 1.9 Consensus size: 64
26797784 AAAAAATATG
* * *
26797794 ATACATTAGGTTTACGTATAAAAAAGTAGATCATACATTAGTTTTGCATATAAAAAAGTAGATA
1 ATACATTAGGTTCACATATAAAAAAGTAGATCATACATTAGTTTTACATATAAAAAAGTAGATA
26797858 ATACATTAGGTTCACATATAAAAAAGTAGATCATACATTAGTTTTACATATAAAAAA
1 ATACATTAGGTTCACATATAAAAAAGTAGATCATACATTAGTTTTACATATAAAAAA
26797915 CTAGCATAGT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
64 54 1.00
ACGTcount: A:0.47, C:0.09, G:0.12, T:0.32
Consensus pattern (64 bp):
ATACATTAGGTTCACATATAAAAAAGTAGATCATACATTAGTTTTACATATAAAAAAGTAGATA
Found at i:26799848 original size:32 final size:32
Alignment explanation
Indices: 26799807--26799871 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
26799797 CCAATCATAT
26799807 TTAAATTTATTTACGTTATGAACCGAAAAGGC
1 TTAAATTTATTTACGTTATGAACCGAAAAGGC
26799839 TTAAATTTATTTACGTTATGAACCGAAAAGGC
1 TTAAATTTATTTACGTTATGAACCGAAAAGGC
26799871 T
1 T
26799872 AACATGTTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.35
Consensus pattern (32 bp):
TTAAATTTATTTACGTTATGAACCGAAAAGGC
Found at i:26800269 original size:18 final size:19
Alignment explanation
Indices: 26800234--26800269 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
26800224 ATGATATTAA
26800234 TGATATACCTACAAGGTAG
1 TGATATACCTACAAGGTAG
26800253 TGATATACCTA-AAGGTA
1 TGATATACCTACAAGGTA
26800270 TGAAAACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (19 bp):
TGATATACCTACAAGGTAG
Found at i:26811956 original size:40 final size:40
Alignment explanation
Indices: 26811899--26812004 Score: 108
Period size: 40 Copynumber: 2.6 Consensus size: 40
26811889 CCAGCATGAT
* * * *
26811899 TGCTCTTCGGGATTTAGCACGGATATA-TCACTAGCACGAA
1 TGCTCTTCGGAACTTAGC-CGGATATAGTAACTAGCACCAA
* *
26811939 TGCTCTTCGGAACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGAACTTAG-CCGGATATAGTAACTAGCACCAA
*
26811980 TGC-CTTCGGATCTTAGTCCGGATAT
1 TGCTCTTCGGAACTTAG-CCGGATAT
26812005 GGTCACTTAG
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
40 41 0.75
41 14 0.25
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (40 bp):
TGCTCTTCGGAACTTAGCCGGATATAGTAACTAGCACCAA
Found at i:26812384 original size:29 final size:29
Alignment explanation
Indices: 26812345--26812423 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
26812335 CTTAATAATC
*
26812345 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
26812375 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
26812404 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
26812424 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:26812466 original size:43 final size:43
Alignment explanation
Indices: 26812405--26812507 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
26812395 TGCATTTCAA
26812405 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
26812448 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
26812491 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
26812508 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:26814656 original size:47 final size:47
Alignment explanation
Indices: 26814511--26814935 Score: 640
Period size: 47 Copynumber: 9.1 Consensus size: 47
26814501 CCCTTCGGGA
** * * * * * *
26814511 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26814558 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26814604 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
26814651 CTTATCAC-CTATATACACTTTCACATTCATCACATCGGCTGTTAGGC
1 CTTATCACAC-ATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26814698 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26814745 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26814792 CTTATCACACATATACACTTTCACATTCATCACATC-GCCATTTGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
26814838 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26814885 CTTATCACACATATACACTTTCACATTCATCACGTCGACCATTAGGC
1 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
26814932 CTTA
1 CTTA
26814936 CTATCATTTC
Statistics
Matches: 354, Mismatches: 20, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
46 86 0.24
47 267 0.75
48 1 0.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26814848 original size:23 final size:23
Alignment explanation
Indices: 26814775--26814849 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
26814765 TCACATTCAT
26814775 CACATCGGCCATTTGGCCTTATCA
1 CACATC-GCCATTTGGCCTTATCA
*** *
26814799 CACATATACACTTT--CACAT-TCA
1 CACATCGCCA-TTTGGC-CTTATCA
26814821 TCACATCGCCATTTGGCCTTATCA
1 -CACATCGCCATTTGGCCTTATCA
26814845 CACAT
1 CACAT
26814850 ATACACTTTC
Statistics
Matches: 37, Mismatches: 8, Indels: 13
0.64 0.14 0.22
Matches are distributed among these distances:
22 7 0.19
23 18 0.49
24 12 0.32
ACGTcount: A:0.27, C:0.33, G:0.09, T:0.31
Consensus pattern (23 bp):
CACATCGCCATTTGGCCTTATCA
Found at i:26814854 original size:187 final size:187
Alignment explanation
Indices: 26814511--26814935 Score: 647
Period size: 187 Copynumber: 2.3 Consensus size: 187
26814501 CCCTTCGGGA
** * * * * * * * *
26814511 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACACATATACAC
*
26814576 TTTCACATTCACACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
66 TTTCACATTCACACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCG
* **
26814641 GCTATTAGGCCTTATCACCTATATACACTTTCACATTCATCACATCGGCTGTTAGGC
131 GCCATTAGGCCTTATCACCTATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26814698 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATACAC
1 CTTATCACACATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACACATATACAC
*
26814763 TTTCACATTCATCACATCGGCCATTTGGCCTTATCACACATATACACTTTCACATTCATCACATC
66 TTTCACATTCA-CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
*
26814828 -GCCATTTGGCCTTATCACAC-ATATACACTTTCACATTCATCACATCGGCCATTAGGC
130 GGCCATTAGGCCTTATCAC-CTATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26814885 CTTATCACACATATACACTTTCACATTCATCACGTCGACCATTAGGCCTTA
1 CTTATCACACATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTA
26814936 CTATCATTTC
Statistics
Matches: 215, Mismatches: 21, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
187 163 0.76
188 52 0.24
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (187 bp):
CTTATCACACATATACACTTTCACATTCATCACGTCGGCCATTAGGCCTTATCACACATATACAC
TTTCACATTCACACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCG
GCCATTAGGCCTTATCACCTATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26814932 original size:234 final size:234
Alignment explanation
Indices: 26814511--26814935 Score: 656
Period size: 234 Copynumber: 1.8 Consensus size: 234
26814501 CCCTTCGGGA
** * * * * *
26814511 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACACATATACACTTTCACATCCATCACATCGGCCACTCGGCCCTATCACACATATACAC
*
26814576 TTTCACATTCACACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
66 TTTCACATTCACACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCG
* * **
26814641 GCTATTAGGCCTTATCACCTATATACACTTTCACATTCATCACATCGGCTGTTAGGCCTTATCAC
131 GCCATTAGGCCTTATCACCTATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCAC
26814706 ACATATACACTTTCACATTCATCACATCGGCTATTAGGC
196 ACATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * * *
26814745 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGCCTTATCACACATATACAC
1 CTTATCACACATATACACTTTCACATCCATCACATCGGCCACTCGGCCCTATCACACATATACAC
*
26814810 TTTCACATTCATCACATC-GCCATTTGGCCTTATCACACATATACACTTTCACATTCATCACATC
66 TTTCACATTCA-CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATC
*
26814874 GGCCATTAGGCCTTATCACAC-ATATACACTTTCACATTCATCACGTCGACCATTAGGCCTTA
130 GGCCATTAGGCCTTATCAC-CTATATACACTTTCACATTCATCACATCGACCATTAGGCCTTA
26814936 CTATCATTTC
Statistics
Matches: 171, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
234 164 0.96
235 7 0.04
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.32
Consensus pattern (234 bp):
CTTATCACACATATACACTTTCACATCCATCACATCGGCCACTCGGCCCTATCACACATATACAC
TTTCACATTCACACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCG
GCCATTAGGCCTTATCACCTATATACACTTTCACATTCATCACATCGACCATTAGGCCTTATCAC
ACATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:26836862 original size:25 final size:25
Alignment explanation
Indices: 26836824--26836871 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
26836814 CAAGCGAGTC
*
26836824 ATATCAGGAAGCTCACAAAGAGCCT
1 ATATCAAGAAGCTCACAAAGAGCCT
* *
26836849 ATATCAAGACGCTCATAAAGAGC
1 ATATCAAGAAGCTCACAAAGAGC
26836872 TGTGGTATGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.42, C:0.23, G:0.19, T:0.17
Consensus pattern (25 bp):
ATATCAAGAAGCTCACAAAGAGCCT
Found at i:26837618 original size:17 final size:17
Alignment explanation
Indices: 26837598--26837633 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
26837588 ATCATAATTT
26837598 CATGAAAATTTCCTTTA
1 CATGAAAATTTCCTTTA
26837615 CATGAAAATTTCCTTTA
1 CATGAAAATTTCCTTTA
26837632 CA
1 CA
26837634 AAAGTTGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.19, G:0.06, T:0.39
Consensus pattern (17 bp):
CATGAAAATTTCCTTTA
Found at i:26838678 original size:116 final size:117
Alignment explanation
Indices: 26838473--26838705 Score: 459
Period size: 116 Copynumber: 2.0 Consensus size: 117
26838463 AAACACGGGG
26838473 ATAATGAGGTGTAAAACCATAGCTTATATTGTGTGGTCCATTGGGACAGTAAACATAGGGTTGTC
1 ATAATGAGGTGTAAAACCATAGCTTATATTGTGTGGTCCATTGGGACAGTAAACATAGGGTTGTC
26838538 CACTGGGACACTACACATGGGATAGTCTGCCAAGATGTTAAATATGAGATTA
66 CACTGGGACACTACACATGGGATAGTCTGCCAAGATGTTAAATATGAGATTA
26838590 ATAATGAGGTGTAAAACCATAGCTTATATTGTGTGGTCCATT-GGACAGTAAACATAGGGTTGTC
1 ATAATGAGGTGTAAAACCATAGCTTATATTGTGTGGTCCATTGGGACAGTAAACATAGGGTTGTC
26838654 CACTGGGACACTACACATGGGATAGTCTGCCAAGATGTTAAATATGAGATTA
66 CACTGGGACACTACACATGGGATAGTCTGCCAAGATGTTAAATATGAGATTA
26838706 TATTGTGTAA
Statistics
Matches: 116, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
116 74 0.64
117 42 0.36
ACGTcount: A:0.33, C:0.15, G:0.24, T:0.28
Consensus pattern (117 bp):
ATAATGAGGTGTAAAACCATAGCTTATATTGTGTGGTCCATTGGGACAGTAAACATAGGGTTGTC
CACTGGGACACTACACATGGGATAGTCTGCCAAGATGTTAAATATGAGATTA
Found at i:26840005 original size:29 final size:29
Alignment explanation
Indices: 26839972--26840031 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
26839962 TAGGAATATG
26839972 AAATTCCATTAGAAT-ATATTAGGTTAATT
1 AAATTCCATTAGAATAAT-TTAGGTTAATT
* **
26840001 AAATTCTATTAGGTTAATTTAGGTTAATT
1 AAATTCCATTAGAATAATTTAGGTTAATT
26840030 AA
1 AA
26840032 TTTAATTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
29 25 0.93
30 2 0.07
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.43
Consensus pattern (29 bp):
AAATTCCATTAGAATAATTTAGGTTAATT
Found at i:26843090 original size:26 final size:26
Alignment explanation
Indices: 26843057--26843118 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
26843047 ATATGGCTTC
* *
26843057 GTGAGCTTCCCGTTTAAAGGCTCTTT
1 GTGAGCTTCCCGATTAAAAGCTCTTT
* *
26843083 GTGAGCTTCCTGATTAAAAGTTCTTT
1 GTGAGCTTCCCGATTAAAAGCTCTTT
*
26843109 GTGAACTTCC
1 GTGAGCTTCC
26843119 TAATTATGGC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (26 bp):
GTGAGCTTCCCGATTAAAAGCTCTTT
Found at i:26845400 original size:23 final size:23
Alignment explanation
Indices: 26845355--26845400 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
26845345 CGACCCAATT
* *
26845355 TGGCCTGGCTCATGAATCGCACA
1 TGGCCTGCCTCATGAATCACACA
26845378 TGGCCTGCCTCATCG-ATCACACA
1 TGGCCTGCCTCAT-GAATCACACA
26845401 CCTGTGTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.22, C:0.35, G:0.22, T:0.22
Consensus pattern (23 bp):
TGGCCTGCCTCATGAATCACACA
Found at i:26847543 original size:44 final size:42
Alignment explanation
Indices: 26847491--26847619 Score: 168
Period size: 43 Copynumber: 3.0 Consensus size: 42
26847481 ATAGGATTTA
26847491 CGATATGTGATTGCATGTAAGACCATGTCTGGGACATTGGCAT
1 CGATATGTGATT-CATGTAAGACCATGTCTGGGACATTGGCAT
* * * * *
26847534 CGTATATGTGATTCGTGTAAGACCCTATCTAGGACAGTGGCAT
1 CG-ATATGTGATTCATGTAAGACCATGTCTGGGACATTGGCAT
* *
26847577 CGATATATGATTACATGTAAGACCACGTCTGGGACATTGGCAT
1 CGATATGTGATT-CATGTAAGACCATGTCTGGGACATTGGCAT
26847620 TGTACGATAT
Statistics
Matches: 72, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
42 9 0.12
43 53 0.74
44 10 0.14
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (42 bp):
CGATATGTGATTCATGTAAGACCATGTCTGGGACATTGGCAT
Found at i:26849787 original size:46 final size:46
Alignment explanation
Indices: 26849588--26849805 Score: 203
Period size: 46 Copynumber: 4.7 Consensus size: 46
26849578 TGGGTATCCG
* * *
26849588 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAACGTCTA
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTA
*
26849634 AACTCGTTGAGTTGACTCCGAGTTCACTTATGGATGCGAACGTCC-A
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTA
* * * * * **
26849680 AACTCGTTGAGTTGAGTCCTAGTGC-GTGA--GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---GC--CTA
* * *
26849727 AGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTA
* *
26849773 AGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26849806 GCGGGTTACA
Statistics
Matches: 140, Mismatches: 21, Indels: 22
0.77 0.11 0.12
Matches are distributed among these distances:
42 3 0.02
43 4 0.03
44 1 0.01
45 3 0.02
46 96 0.69
47 22 0.16
48 4 0.03
50 4 0.03
51 3 0.02
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTA
Found at i:26852538 original size:40 final size:40
Alignment explanation
Indices: 26852464--26852722 Score: 389
Period size: 40 Copynumber: 6.5 Consensus size: 40
26852454 AACCCAAGTA
* *
26852464 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
*
26852503 CCTTCGTGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
26852543 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
** * * * *
26852583 CCTTCGGGGTTTAGCCTGGATATAGTCACTAGCAC-ACTA
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
26852622 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
26852662 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
26852702 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGACTTAGCCCGGAT
26852723 GTCATCCGAA
Statistics
Matches: 202, Mismatches: 15, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
39 46 0.23
40 153 0.76
41 3 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:26852661 original size:79 final size:80
Alignment explanation
Indices: 26852462--26852722 Score: 393
Period size: 79 Copynumber: 3.3 Consensus size: 80
26852452 CAAACCCAAG
* * *
26852462 TACCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGCCTTCGTGACTTAGCCCGGATA
1 TACCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATA
*
26852525 TAGTCAATAGCACAAA
65 TAGTCACTAGCACAAA
* * ** *
26852541 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATGCCTTCGGGGTTTAGCCTGGATAT
1 TACCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
*
26852606 AGTCACTAGCAC-AC
66 AGTCACTAGCACAAA
26852620 TACCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 TACCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
26852685 AGTCACTAGCACAAA
66 AGTCACTAGCACAAA
*
26852700 TGCCTTCGGGACTTAGCCCGGAT
1 TACCTTCGGGACTTAGCCCGGAT
26852723 GTCATCCGAA
Statistics
Matches: 162, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
79 87 0.54
80 74 0.46
81 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.23, T:0.24
Consensus pattern (80 bp):
TACCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
AGTCACTAGCACAAA
Found at i:26852675 original size:119 final size:119
Alignment explanation
Indices: 26852464--26852722 Score: 405
Period size: 119 Copynumber: 2.2 Consensus size: 119
26852454 AACCCAAGTA
* * *
26852464 CCTTCGGGATTTAGCCGGATATAGCAACTCGCACAAATGCCTTCGTGACTTAGCCCGGATATAGT
1 CCTTCGGGATTTAGCCGGATATAGCAACTAGCACAAATACCTTCGGGACTTAGCCCGGATATAGT
26852529 CAATAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
66 CAATAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
26852583 CCTTCGGGGTTTAGCCTGGATATAGTC-ACTAGCAC-ACTACCTTCGGGACTTAGCCCGGATATA
1 CCTTCGGGATTTAGCC-GGATATAG-CAACTAGCACAAATACCTTCGGGACTTAGCCCGGATATA
* *
26852646 GTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
64 GTCAATAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
*
26852702 CCTTCGGGACTTAGCCCGGAT
1 CCTTCGGGATTTAG-CCGGAT
26852723 GTCATCCGAA
Statistics
Matches: 128, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
119 110 0.86
120 17 0.13
121 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (119 bp):
CCTTCGGGATTTAGCCGGATATAGCAACTAGCACAAATACCTTCGGGACTTAGCCCGGATATAGT
CAATAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:26859043 original size:46 final size:46
Alignment explanation
Indices: 26858970--26859135 Score: 158
Period size: 46 Copynumber: 3.6 Consensus size: 46
26858960 TATTTGGGTA
* *
26858970 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * * * *
26859016 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
26859063 TCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
26859109 TCCGAACTCATTAAGTTGAGTCTGAGT
1 TCCGAACTCATTGAGTTGAGTCCGAGT
26859136 GCGTGAGATG
Statistics
Matches: 95, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 51 0.54
47 27 0.28
48 3 0.03
50 5 0.05
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:26859083 original size:47 final size:47
Alignment explanation
Indices: 26859026--26859185 Score: 168
Period size: 47 Copynumber: 3.4 Consensus size: 47
26859016 TCTGAACTCG
26859026 TTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTCA
1 TTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTCA
* * * *
26859073 TTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCGAACTCA
1 TTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCGAGCTCA
* * * * *
26859119 TTAAGTTGAGTCTGAGTGCGTGAGATGTAACTAGGCATCTGAGCTCG
1 TTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTCA
26859166 TTGAGTTGAGTCCGAGTTCG
1 TTGAGTTGAGTCCGAGTTCG
26859186 CTTATGGGCA
Statistics
Matches: 88, Mismatches: 16, Indels: 18
0.72 0.13 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.06
45 3 0.03
46 25 0.28
47 43 0.49
48 3 0.03
50 5 0.06
51 2 0.02
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (47 bp):
TTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCGAGCTCA
Found at i:26859084 original size:93 final size:93
Alignment explanation
Indices: 26858969--26859192 Score: 340
Period size: 93 Copynumber: 2.4 Consensus size: 93
26858959 ATATTTGGGT
* * * * *
26858969 ATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAACGTCTGAACTCGTTGAGTTG
1 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCATTAAGTTG
*
26859034 AGTCCGAGTTCGTGAGATGTAACTAGGC
66 AGTCCGAGTGCGTGAGATGTAACTAGGC
* * *
26859062 ATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCATTAAGTTG
1 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCATTAAGTTG
*
26859127 AGTCTGAGTGCGTGAGATGTAACTAGGC
66 AGTCCGAGTGCGTGAGATGTAACTAGGC
* *
26859155 ATCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26859193 GCAGGTTACA
Statistics
Matches: 118, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 118 1.00
ACGTcount: A:0.23, C:0.18, G:0.29, T:0.30
Consensus pattern (93 bp):
ATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCGAACTCATTAAGTTG
AGTCCGAGTGCGTGAGATGTAACTAGGC
Found at i:26862761 original size:40 final size:40
Alignment explanation
Indices: 26862708--26862892 Score: 318
Period size: 40 Copynumber: 4.6 Consensus size: 40
26862698 ACTACTTGCT
*
26862708 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
26862748 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
26862788 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
26862828 CAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGAA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
26862868 CAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
26862893 TTATCATCCG
Statistics
Matches: 140, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
39 1 0.01
40 139 0.99
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:26870784 original size:40 final size:40
Alignment explanation
Indices: 26870731--26870879 Score: 237
Period size: 40 Copynumber: 3.7 Consensus size: 40
26870721 ACTACTTGCT
26870731 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
26870771 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
26870811 CAAATGCCTTCGGGACTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
*
26870851 CAAATACCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
26870880 CATCCGAATA
Statistics
Matches: 101, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
39 1 0.01
40 99 0.98
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:26872077 original size:11 final size:11
Alignment explanation
Indices: 26872061--26872085 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26872051 GAGGATGAAG
26872061 CTTTTTTTTTT
1 CTTTTTTTTTT
26872072 CTTTTTTTTTT
1 CTTTTTTTTTT
26872083 CTT
1 CTT
26872086 CTAGGTACGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (11 bp):
CTTTTTTTTTT
Found at i:26873936 original size:43 final size:43
Alignment explanation
Indices: 26873841--26874003 Score: 143
Period size: 43 Copynumber: 3.8 Consensus size: 43
26873831 ACCAAGATGT
* * * * * *
26873841 GATTACATGTAAGACAATGTCTGGGACATTGGCGTTGTATTGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAATGC
26873884 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTTAAT-C
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCG-TAATGC
* * * ** *
26873927 GATTTCGTGTAAAACCCTGTCTGGGACAGAGGCATCG-ATATGT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTA-ATGC
* * * *
26873970 GATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 GATTACGTGTAAGACCATGTCTGGGACATTGGCAT
26874004 TGTACGAGCT
Statistics
Matches: 97, Mismatches: 20, Indels: 7
0.78 0.16 0.06
Matches are distributed among these distances:
41 1 0.01
42 7 0.07
43 86 0.89
44 3 0.03
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (43 bp):
GATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTAATGC
Found at i:26880064 original size:82 final size:82
Alignment explanation
Indices: 26879926--26880115 Score: 254
Period size: 82 Copynumber: 2.3 Consensus size: 82
26879916 CCGTGTGTGA
** *
26879926 CACACGGCCTAGCACATAGGCGTGTGATTTGGCCGTGTGTCCCCTACATCTCTAAAACGTCAAAA
1 CACACGGCCTAGCACAT-GG-GCATGATCTGGCCGTGTGTCCCCTACATCTCTAAAACGTCAAAA
*
26879991 CAGAATGCTCAGAATTGAT
64 CAGAATGCTCAAAATTGAT
* ** * * *
26880010 CACACGGCCTAGCACATGGGCATGATCTGGCCGTGTGTCTCCTTTATCTTTAAAATGTCAAAATA
1 CACACGGCCTAGCACATGGGCATGATCTGGCCGTGTGTCCCCTACATCTCTAAAACGTCAAAACA
26880075 GAATGCTCAAAATTGAT
66 GAATGCTCAAAATTGAT
* *
26880092 CACACGGCTTGGCACATGGGCATG
1 CACACGGCCTAGCACATGGGCATG
26880116 TGGCTTGGCT
Statistics
Matches: 94, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
82 75 0.80
83 2 0.02
84 17 0.18
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (82 bp):
CACACGGCCTAGCACATGGGCATGATCTGGCCGTGTGTCCCCTACATCTCTAAAACGTCAAAACA
GAATGCTCAAAATTGAT
Found at i:26883036 original size:27 final size:25
Alignment explanation
Indices: 26882984--26883036 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 25
26882974 AAACTCTTCT
*
26882984 AAAAGAAACTCAAGAGAAATTCTTA
1 AAAAGAAACTCAAGAGAAATTATTA
*
26883009 AAAAGAAAACTCAAAGAGAATTTATTA
1 AAAAG-AAACTC-AAGAGAAATTATTA
26883036 A
1 A
26883037 CGCAAAAGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.21
26 6 0.25
27 13 0.54
ACGTcount: A:0.58, C:0.09, G:0.11, T:0.21
Consensus pattern (25 bp):
AAAAGAAACTCAAGAGAAATTATTA
Found at i:26884170 original size:11 final size:12
Alignment explanation
Indices: 26884144--26884175 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
26884134 TAAATAATAT
26884144 GATCCTAGATAA
1 GATCCTAGATAA
26884156 -ATCC-AGATAA
1 GATCCTAGATAA
26884166 GATCCTAGAT
1 GATCCTAGAT
26884176 GTATATTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
10 6 0.33
11 8 0.44
12 4 0.22
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.25
Consensus pattern (12 bp):
GATCCTAGATAA
Found at i:26890033 original size:49 final size:49
Alignment explanation
Indices: 26889961--26890055 Score: 181
Period size: 49 Copynumber: 1.9 Consensus size: 49
26889951 ATGTAAATGA
*
26889961 ATCAAAAATATAAAAGTATCAAAGCTATGATGAATTGACGGATATTGAG
1 ATCAAAAATATAAAAGTATCAAAGCTATGATGAATAGACGGATATTGAG
26890010 ATCAAAAATATAAAAGTATCAAAGCTATGATGAATAGACGGATATT
1 ATCAAAAATATAAAAGTATCAAAGCTATGATGAATAGACGGATATT
26890056 AAGTCCCAGT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.48, C:0.08, G:0.17, T:0.26
Consensus pattern (49 bp):
ATCAAAAATATAAAAGTATCAAAGCTATGATGAATAGACGGATATTGAG
Found at i:26893807 original size:46 final size:44
Alignment explanation
Indices: 26893628--26893844 Score: 190
Period size: 46 Copynumber: 4.7 Consensus size: 44
26893618 ATTGTGAGCT
* * *
26893628 AGTGTAAGACATGTTTGGGACATGCATCGG-TCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCT-ACGA-GAT--GAGTC
* *
26893674 AGTGTAAGAACATGTCTGGGACATGGCATCGGC-ATTGAGACGAGTGC
1 AGTGTAAG-ACATGTCTGGGACAT-GCATCGGCTA-CGAGATGAGT-C
* *
26893721 TAGTGTAAGACATGTTTGGGACATGCATCGGCCT-CAAGATGTAAGTC
1 -AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATG--AGTC
* *
26893768 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGTGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGAGTC
*
26893812 TGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
26893845 ACCTTACCCC
Statistics
Matches: 143, Mismatches: 14, Indels: 28
0.77 0.08 0.15
Matches are distributed among these distances:
44 10 0.07
45 16 0.11
46 65 0.45
47 32 0.22
48 19 0.13
49 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.25
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGATGAGTC
Found at i:26895618 original size:18 final size:17
Alignment explanation
Indices: 26895591--26895624 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
26895581 AATTGTGGTT
26895591 TGATAAATGTTGCATATA
1 TGATAAATGTTG-ATATA
*
26895609 TGATAGATGTTGATAT
1 TGATAAATGTTGATAT
26895625 TGTATTGGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.35, C:0.03, G:0.21, T:0.41
Consensus pattern (17 bp):
TGATAAATGTTGATATA
Found at i:26896174 original size:20 final size:20
Alignment explanation
Indices: 26896149--26896186 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26896139 TATTTAGGGC
26896149 AAAAATTTTCT-AAGTTCTAT
1 AAAAA-TTTCTAAAGTTCTAT
26896169 AAAAATTTCTAAAGTTCT
1 AAAAATTTCTAAAGTTCT
26896187 CAGTTTAGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.42, C:0.11, G:0.05, T:0.42
Consensus pattern (20 bp):
AAAAATTTCTAAAGTTCTAT
Found at i:26897373 original size:145 final size:146
Alignment explanation
Indices: 26897175--26897480 Score: 458
Period size: 145 Copynumber: 2.1 Consensus size: 146
26897165 GGAAACATGT
* *
26897175 TGATTTTTTCTAAAAAAGATAAAGTTTAGATTTTTAAAATAAAAATATTTTTTTAGTCATATTAA
1 TGATTTTTT-TTAAAAAGATAAAGTTTAGATTTTTAAAATAAAAATATATTTTTAGTCATATTAA
* *
26897240 AGGAAATGTTTAAA-TTTTTAAAACAAAGTTTTGATCTTTTTCAATTATTTCGAAATAAAG-TTT
65 AGGAAAAGTTTAAATTTTTTAAAACAAA-TTTTGATCTTTTTCAACTATTTCGAAATAAAGTTTT
26897303 GATTTTTAAGAAAAATAG
129 GATTTTTAAGAAAAATAG
* *
26897321 TGATTTTTTTTAAAAAGA-AAAGGTTTAGA-TTTTAAAATAAAAATATGATTTTTCGTCATTTTA
1 TGATTTTTTTTAAAAAGATAAA-GTTTAGATTTTTAAAATAAAAATAT-ATTTTTAGTCATATTA
* *
26897384 AAGGAAAAGTTTAAATTTTTTAAAATAAATTTTGATCTTTTTCAACTATTTCTAAATAAAGTTTT
64 AAGGAAAAGTTTAAATTTTTTAAAACAAATTTTGATCTTTTTCAACTATTTCGAAATAAAGTTTT
*
26897449 GATTTTTAAGAAAAGTAG
129 GATTTTTAAGAAAAATAG
*
26897467 TGATTCTTTTTAAA
1 TGATTTTTTTTAAA
26897481 GAAACTTTGA
Statistics
Matches: 146, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
144 20 0.14
145 72 0.49
146 54 0.37
ACGTcount: A:0.41, C:0.04, G:0.10, T:0.45
Consensus pattern (146 bp):
TGATTTTTTTTAAAAAGATAAAGTTTAGATTTTTAAAATAAAAATATATTTTTAGTCATATTAAA
GGAAAAGTTTAAATTTTTTAAAACAAATTTTGATCTTTTTCAACTATTTCGAAATAAAGTTTTGA
TTTTTAAGAAAAATAG
Found at i:26903183 original size:45 final size:45
Alignment explanation
Indices: 26903132--26903217 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
26903122 ATGTGATCTG
*
26903132 AACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGACATCCA
1 AACTCATTGAGTCGTGGTCTGAGTTCATGATATATGTGACATCCA
*
26903177 AACTCATTGAGTCGTGGTCTGAGTTCATGATGTATGTGACA
1 AACTCATTGAGTCGTGGTCTGAGTTCATGATATATGTGACA
26903218 CATGTTTTGG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (45 bp):
AACTCATTGAGTCGTGGTCTGAGTTCATGATATATGTGACATCCA
Found at i:26906118 original size:49 final size:49
Alignment explanation
Indices: 26906046--26906233 Score: 241
Period size: 49 Copynumber: 3.8 Consensus size: 49
26906036 TGAGGTCACG
*
26906046 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * * *
26906095 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGTGATCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCGCA
* * *
26906146 CGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * *
26906195 TGTGTATTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
26906234 GCTTCAGCTA
Statistics
Matches: 116, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
49 75 0.65
50 2 0.02
51 39 0.34
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:26906220 original size:100 final size:100
Alignment explanation
Indices: 26906047--26906228 Score: 328
Period size: 100 Copynumber: 1.8 Consensus size: 100
26906037 GAGGTCACGT
**
26906047 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGTGC
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTGGTCGCATGTGTAGTACTAAGTGC
26906112 AGGCTACTATGCGTACCTGAAAACTGTGATCACAC
66 AGGCTACTATGCGTACCTGAAAACTGTGATCACAC
* *
26906147 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTATTGGTCGCATGTGTATTACTAAGTGC
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTGGTCGCATGTGTAGTACTAAGTGC
26906212 AGGCTACTATGCGTACC
66 AGGCTACTATGCGTACC
26906229 AGATAGCTTC
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 78 1.00
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (100 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATAATTGGTCGCATGTGTAGTACTAAGTGC
AGGCTACTATGCGTACCTGAAAACTGTGATCACAC
Found at i:26913638 original size:12 final size:12
Alignment explanation
Indices: 26913598--26913631 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
26913588 ATCAATTATT
26913598 CATTCATTCATC
1 CATTCATTCATC
26913610 CATTCA-TCAATC
1 CATTCATTC-ATC
26913622 CATTCATTCA
1 CATTCATTCA
26913632 CTCATTCGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
11 2 0.10
12 16 0.80
13 2 0.10
ACGTcount: A:0.29, C:0.32, G:0.00, T:0.38
Consensus pattern (12 bp):
CATTCATTCATC
Found at i:26917712 original size:29 final size:29
Alignment explanation
Indices: 26917641--26917736 Score: 131
Period size: 29 Copynumber: 3.3 Consensus size: 29
26917631 AAGTCTACAT
* * *
26917641 ACATGCATTTGGCCCACTAGGCCC-AATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
* *
26917669 TCATTCATATGGCCCATTAGGCCCAAATA
1 ACATTCATATGGCCCATTAGGCCCAAATC
*
26917698 ACATTCGTATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCATTAGGCCCAAATC
26917727 ACATTCATAT
1 ACATTCATAT
26917737 ACATGCTTTC
Statistics
Matches: 58, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
28 20 0.34
29 38 0.66
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.26
Consensus pattern (29 bp):
ACATTCATATGGCCCATTAGGCCCAAATC
Found at i:26921398 original size:42 final size:42
Alignment explanation
Indices: 26921304--26921454 Score: 153
Period size: 42 Copynumber: 3.6 Consensus size: 42
26921294 GATTTAAGAT
26921304 TTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATCTGA
1 TTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATCTGA
** *
26921346 TTACACGTAAGACTATGTCTGGGACATTGGCATCGTATCTGA
1 TTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATCTGA
* * * ** *
26921388 -TATCGTGTAAGACCCTATCAGGGACAGAGGCATCG-ACACTGAA
1 TTA-CGTGTAAGACCATGTCTGGGACATTGGCATCGTA-TCTG-A
* **
26921431 TTACATGTAAGACCACATCTGGGA
1 TTACGTGTAAGACCATGTCTGGGA
26921455 TGTAGGCATT
Statistics
Matches: 89, Mismatches: 16, Indels: 7
0.79 0.14 0.06
Matches are distributed among these distances:
41 3 0.03
42 66 0.74
43 18 0.20
44 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATCTGA
Found at i:26924716 original size:29 final size:29
Alignment explanation
Indices: 26924652--26924769 Score: 184
Period size: 29 Copynumber: 4.1 Consensus size: 29
26924642 CATACATGCA
* * * *
26924652 TATGGCCCACTAAGCCC-AATCTCATTCA
1 TATGGCCCATTAGGCCCAAATCACATTCG
*
26924680 TATGGCCCATTAGGCCCAAATAACATTCG
1 TATGGCCCATTAGGCCCAAATCACATTCG
26924709 TATGGCCCATTAGGCCCAAATCACATTCG
1 TATGGCCCATTAGGCCCAAATCACATTCG
26924738 TATGGCCCATTAGGCCCAAATCACATTCG
1 TATGGCCCATTAGGCCCAAATCACATTCG
26924767 TAT
1 TAT
26924770 ACATGTTTTC
Statistics
Matches: 83, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
28 15 0.18
29 68 0.82
ACGTcount: A:0.29, C:0.31, G:0.15, T:0.25
Consensus pattern (29 bp):
TATGGCCCATTAGGCCCAAATCACATTCG
Found at i:26932890 original size:30 final size:30
Alignment explanation
Indices: 26932854--26932910 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
26932844 CCGAGCCTGG
*
26932854 GGGCAAAAGTGTAATTATGCAAAAGTTTAA
1 GGGCAAAAATGTAATTATGCAAAAGTTTAA
* *
26932884 GGGCAAAAATGTAATTTTGCCAAAGTT
1 GGGCAAAAATGTAATTATGCAAAAGTT
26932911 CGTATTAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (30 bp):
GGGCAAAAATGTAATTATGCAAAAGTTTAA
Found at i:26945511 original size:18 final size:18
Alignment explanation
Indices: 26945488--26945522 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
26945478 AGGGTGCCGA
26945488 TGATGATGATGACGAGGT
1 TGATGATGATGACGAGGT
26945506 TGATGATGATGACGAGG
1 TGATGATGATGACGAGG
26945523 AGACCCCTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.06, G:0.40, T:0.26
Consensus pattern (18 bp):
TGATGATGATGACGAGGT
Found at i:26948521 original size:24 final size:23
Alignment explanation
Indices: 26948485--26948534 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 23
26948475 TCAAGTACAT
26948485 TTTAGTTTTTGTTTTTCATTTTAG
1 TTTAGTTTTTGTTTTT-ATTTTAG
*
26948509 TTTA-TTTTCTGTTTTTATTTTTG
1 TTTAGTTTT-TGTTTTTATTTTAG
26948532 TTT
1 TTT
26948535 TTGTTTTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 13 0.54
24 11 0.46
ACGTcount: A:0.10, C:0.04, G:0.10, T:0.76
Consensus pattern (23 bp):
TTTAGTTTTTGTTTTTATTTTAG
Found at i:26968491 original size:29 final size:29
Alignment explanation
Indices: 26968437--26968494 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
26968427 CTCTAAAGTT
* *
26968437 CTGATATCATGGTCTGAAGCCAAAATCAG
1 CTGATATCATGGCCCGAAGCCAAAATCAG
*
26968466 CTGATATGCATGGCCCGAAG-CTAAATCAG
1 CTGATAT-CATGGCCCGAAGCCAAAATCAG
26968495 TATATCTTGC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 15 0.60
30 10 0.40
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22
Consensus pattern (29 bp):
CTGATATCATGGCCCGAAGCCAAAATCAG
Found at i:26971993 original size:29 final size:27
Alignment explanation
Indices: 26971975--26972044 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
26971965 ATATTAAGTC
26971975 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
26972002 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
26972030 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
26972045 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:26972038 original size:28 final size:28
Alignment explanation
Indices: 26971975--26972072 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
26971965 ATATTAAGTC
*
26971975 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
26972002 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
26972030 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
26972059 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26972073 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:26980167 original size:29 final size:27
Alignment explanation
Indices: 26980149--26980218 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
26980139 ATATTAAGTC
26980149 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
26980176 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
26980204 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
26980219 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:26980212 original size:28 final size:28
Alignment explanation
Indices: 26980149--26980246 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
26980139 ATATTAAGTC
*
26980149 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
26980176 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
26980204 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
*
26980233 CGTACACTTAGTGC
1 CGCACACTTAGTGC
26980247 CGAAATCAAC
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
27 22 0.35
28 23 0.37
29 18 0.29
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:26997336 original size:34 final size:34
Alignment explanation
Indices: 26997266--26997359 Score: 109
Period size: 34 Copynumber: 2.8 Consensus size: 34
26997256 CTGATACTGA
* * *
26997266 ACTGAAATGGGCCAAGGCCCACACTAATACTACT
1 ACTGATATGGGCTAAGGCCCACACTGATACTACT
* *
26997300 ACTG-TATTGGGCTAAGGCCCACACTGATATTGCT
1 ACTGATA-TGGGCTAAGGCCCACACTGATACTACT
* *
26997334 ACTGATATGGGCTTAGGCCCAGACTG
1 ACTGATATGGGCTAAGGCCCACACTG
26997360 TTCAACTCTG
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
33 1 0.02
34 48 0.94
35 2 0.04
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (34 bp):
ACTGATATGGGCTAAGGCCCACACTGATACTACT
Found at i:27000969 original size:13 final size:13
Alignment explanation
Indices: 27000951--27000975 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27000941 CTTGGCAGGG
27000951 ACACGCCCGTGTA
1 ACACGCCCGTGTA
27000964 ACACGCCCGTGT
1 ACACGCCCGTGT
27000976 GCGATTACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.40, G:0.24, T:0.16
Consensus pattern (13 bp):
ACACGCCCGTGTA
Found at i:27021609 original size:34 final size:34
Alignment explanation
Indices: 27021564--27021646 Score: 105
Period size: 34 Copynumber: 2.4 Consensus size: 34
27021554 CTGAATTGAA
* *
27021564 ATGGGCCAAGGCCCACACTAATACTGCTACTG-T
1 ATGGGCTAAGGCCCACACTAATACTGCGACTGAT
* *
27021597 ATTGGGCTAAGGCCCACACTGATATTGCGACTGAT
1 A-TGGGCTAAGGCCCACACTAATACTGCGACTGAT
*
27021632 ATGGGCTTAGGCCCA
1 ATGGGCTAAGGCCCA
27021647 GACTGTTCAA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
33 1 0.02
34 40 0.93
35 2 0.05
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (34 bp):
ATGGGCTAAGGCCCACACTAATACTGCGACTGAT
Found at i:27023143 original size:31 final size:31
Alignment explanation
Indices: 27023108--27023184 Score: 95
Period size: 29 Copynumber: 2.5 Consensus size: 31
27023098 AACCGAAGCT
*
27023108 ATCCCTTTTAATAATTTTGGTGGTCGTCACC
1 ATCCCTTTTAATAATTTTGATGGTCGTCACC
* * *
27023139 ATCCCTTTTTAT-A-GTTGATGGTTGTCACC
1 ATCCCTTTTAATAATTTTGATGGTCGTCACC
*
27023168 ATCCCTTTTCATAATTT
1 ATCCCTTTTAATAATTT
27023185 GATAGCCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
29 24 0.63
30 2 0.05
31 12 0.32
ACGTcount: A:0.19, C:0.22, G:0.13, T:0.45
Consensus pattern (31 bp):
ATCCCTTTTAATAATTTTGATGGTCGTCACC
Found at i:27023294 original size:119 final size:119
Alignment explanation
Indices: 27023078--27023360 Score: 372
Period size: 119 Copynumber: 2.4 Consensus size: 119
27023068 GGTTGTCACC
* * * *** *
27023078 ATCCTTTTTCAT-ATATCGATAACCGAAGCTATCCCTTTTAATAATTTTGGTGGTCGTCACCATC
1 ATCCTTTTTCATAAT-TCGATAGCCGAAGCTATCCCTTTTCAT-AGTTCAATGGTCATCACCATC
*
27023142 CCTTTTTATAGTTGATGGTTGTCACCATCCCTTTTCATAATTTGATAGCCAAAGCT
64 CCTTTTTATAGTTGATGGTCGTCACCATCCCTTTTCATAATTTGATAGCCAAAGCT
*
27023198 ATCC-TTTTCATAATTCGATAGCCGAAGCTATCCCTTTTCATAGTTCAATGGTCATCGCCATCCC
1 ATCCTTTTTCATAATTCGATAGCCGAAGCTATCCCTTTTCATAGTTCAATGGTCATCACCATCCC
* **
27023262 TTTTTCATTGTTGATGGTCGTCACCATCCCTTTTCATAATTTGATAGCTGAAGCT
66 TTTTT-ATAGTTGATGGTCGTCACCATCCCTTTTCATAATTTGATAGCCAAAGCT
* * * *
27023317 ATCCTTTTTTCATAATTTGATAGCCAAAGTTATCTCTTTTCATA
1 ATCC-TTTTTCATAATTCGATAGCCGAAGCTATCCCTTTTCATA
27023361 ATTCGATAGC
Statistics
Matches: 143, Mismatches: 16, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
118 22 0.15
119 81 0.57
120 6 0.04
121 34 0.24
ACGTcount: A:0.24, C:0.23, G:0.13, T:0.41
Consensus pattern (119 bp):
ATCCTTTTTCATAATTCGATAGCCGAAGCTATCCCTTTTCATAGTTCAATGGTCATCACCATCCC
TTTTTATAGTTGATGGTCGTCACCATCCCTTTTCATAATTTGATAGCCAAAGCT
Found at i:27023328 original size:31 final size:31
Alignment explanation
Indices: 27023292--27023386 Score: 129
Period size: 31 Copynumber: 3.1 Consensus size: 31
27023282 TCACCATCCC
*
27023292 TTTTCATAATTTGATAGCTGAAGCTATCCTT
1 TTTTCATAATTTGATAGCCGAAGCTATCCTT
* * *
27023323 TTTTCATAATTTGATAGCCAAAGTTAT-CTC
1 TTTTCATAATTTGATAGCCGAAGCTATCCTT
* *
27023353 TTTTCATAATTCGATAGCCGAAGCTATCCCT
1 TTTTCATAATTTGATAGCCGAAGCTATCCTT
27023384 TTT
1 TTT
27023387 CATTGATCGA
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
30 26 0.48
31 28 0.52
ACGTcount: A:0.26, C:0.19, G:0.12, T:0.43
Consensus pattern (31 bp):
TTTTCATAATTTGATAGCCGAAGCTATCCTT
Found at i:27023397 original size:30 final size:30
Alignment explanation
Indices: 27023168--27023389 Score: 191
Period size: 30 Copynumber: 7.4 Consensus size: 30
27023158 GGTTGTCACC
* *
27023168 ATCCCTTTTCATAATTTGATAGCCAAAGCT
1 ATCCCTTTTCATAATTCGATAGCCGAAGCT
27023198 AT-CCTTTTCATAATTCGATAGCCGAAGCT
1 ATCCCTTTTCATAATTCGATAGCCGAAGCT
* * * * * *
27023227 ATCCCTTTTCATAGTTCAATGGTC-ATCGCC
1 ATCCCTTTTCATAATTCGATAGCCGA-AGCT
** * * * *
27023257 ATCCCTTTTTCATTGTT-GATGGTCGTCA-CC
1 ATCCC-TTTTCATAATTCGATAGCCG-AAGCT
* *
27023287 ATCCCTTTTCATAATTTGATAGCTGAAGCT
1 ATCCCTTTTCATAATTCGATAGCCGAAGCT
* * * *
27023317 ATCCTTTTTTCATAATTTGATAGCCAAAGTT
1 ATCC-CTTTTCATAATTCGATAGCCGAAGCT
*
27023348 ATCTCTTTTCATAATTCGATAGCCGAAGCT
1 ATCCCTTTTCATAATTCGATAGCCGAAGCT
27023378 ATCCCTTTTCAT
1 ATCCCTTTTCAT
27023390 TGATCGATGA
Statistics
Matches: 155, Mismatches: 29, Indels: 16
0.77 0.14 0.08
Matches are distributed among these distances:
29 38 0.25
30 82 0.53
31 35 0.23
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.40
Consensus pattern (30 bp):
ATCCCTTTTCATAATTCGATAGCCGAAGCT
Found at i:27025199 original size:22 final size:22
Alignment explanation
Indices: 27025171--27025223 Score: 79
Period size: 22 Copynumber: 2.4 Consensus size: 22
27025161 AAATGATCAC
* *
27025171 GGTGGTGGTGCGGCGGTGGTGA
1 GGTGGTGGTGCAGCGATGGTGA
*
27025193 GGTGGTGGTGCAGTGATGGTGA
1 GGTGGTGGTGCAGCGATGGTGA
27025215 GGTGGTGGT
1 GGTGGTGGT
27025224 ATGGTTCATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.08, C:0.06, G:0.60, T:0.26
Consensus pattern (22 bp):
GGTGGTGGTGCAGCGATGGTGA
Found at i:27025223 original size:11 final size:11
Alignment explanation
Indices: 27025171--27025223 Score: 63
Period size: 11 Copynumber: 4.8 Consensus size: 11
27025161 AAATGATCAC
*
27025171 GGTGGTGGTGC
1 GGTGGTGGTGA
*
27025182 GGCGGTGGTGA
1 GGTGGTGGTGA
27025193 GGTGGTGGTGCA
1 GGTGGTGGTG-A
*
27025205 -GTGATGGTGA
1 GGTGGTGGTGA
27025215 GGTGGTGGT
1 GGTGGTGGT
27025224 ATGGTTCATT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
10 1 0.03
11 33 0.94
12 1 0.03
ACGTcount: A:0.08, C:0.06, G:0.60, T:0.26
Consensus pattern (11 bp):
GGTGGTGGTGA
Found at i:27031496 original size:24 final size:24
Alignment explanation
Indices: 27031465--27031518 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
27031455 TATTGCAAAG
* *
27031465 AAGCCACTCAAT-AGTGTTGTGGTC
1 AAGCCACTCAATAACT-TTGTGGCC
27031489 AAGCCACTCAATAACTTTGTGGCC
1 AAGCCACTCAATAACTTTGTGGCC
27031513 AAGCCA
1 AAGCCA
27031519 TTTAATATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 25 0.93
25 2 0.07
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (24 bp):
AAGCCACTCAATAACTTTGTGGCC
Found at i:27032868 original size:29 final size:29
Alignment explanation
Indices: 27032835--27032893 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
27032825 TCCACCTTGA
* * *
27032835 CACGAATTCTCAATGAACAAGTTCTTCAC
1 CACGAACTCTCAATGAAAAAGTTCTCCAC
27032864 CACGAACTCTCAATGAAAAAGTTCTCCAC
1 CACGAACTCTCAATGAAAAAGTTCTCCAC
27032893 C
1 C
27032894 TCTTCCATGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.36, C:0.31, G:0.10, T:0.24
Consensus pattern (29 bp):
CACGAACTCTCAATGAAAAAGTTCTCCAC
Found at i:27037251 original size:22 final size:19
Alignment explanation
Indices: 27037226--27037273 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 19
27037216 TACCATTTTG
27037226 ATTAAATTCTTGTCAAAAAATA
1 ATTAAATT-TT-T-AAAAAATA
*
27037248 ATT-AATTTTTATAAAATA
1 ATTAAATTTTTAAAAAATA
27037266 ATTAAATT
1 ATTAAATT
27037274 ATACTTAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 10 0.42
19 5 0.21
20 2 0.08
21 4 0.17
22 3 0.12
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (19 bp):
ATTAAATTTTTAAAAAATA
Found at i:27040562 original size:46 final size:46
Alignment explanation
Indices: 27040510--27040775 Score: 184
Period size: 46 Copynumber: 5.7 Consensus size: 46
27040500 ATTTGGGCAT
*
27040510 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAAGGC
* * * *
27040556 CCGAACTCGTTGGGTTGAGTCCGAGTT--CGT-GAGATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAA--AGGC
* * * * * *
27040601 ATCCAAATTTGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAATGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAAGGC
* * * * *
27040649 CCTAACTCGTTGAGTTGTGTCCGAGTT--CGT-GAGATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAA--AGGC
* * * * *
27040694 ATTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAAGGC
* * * * *
27040742 CTGAGCTCGTTTAGTTGAGTCCGACTTCTCTTAT
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT
27040776 GGGTGGGTTA
Statistics
Matches: 166, Mismatches: 40, Indels: 28
0.71 0.17 0.12
Matches are distributed among these distances:
43 12 0.07
44 4 0.02
45 6 0.04
46 78 0.47
47 46 0.28
48 6 0.04
49 4 0.02
50 10 0.06
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.31
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAAGGC
Found at i:27040629 original size:47 final size:47
Alignment explanation
Indices: 27040559--27040723 Score: 158
Period size: 47 Copynumber: 3.5 Consensus size: 47
27040549 CAAATGCCCG
*
27040559 AACTCGTTGGGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCA
1 AACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCA
* * * * * * * *
27040606 AATTTGTTGAGTTGAGTCCGAGTTCACT--TATGGATACAAATGC--CCT
1 AACTCGTTGAGTTGAGTCCGAGTTC-GTGAGATGTA-AC-TAGGCATCCA
* * *
27040652 AACTCGTTGAGTTGTGTCCGAGTTCGTGAGATGTAACTAGGCATTCG
1 AACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCA
*
27040699 AGCTCGTTGAGTTGAGTCCGAGTTC
1 AACTCGTTGAGTTGAGTCCGAGTTC
27040724 ACTTATGGAT
Statistics
Matches: 90, Mismatches: 21, Indels: 14
0.72 0.17 0.11
Matches are distributed among these distances:
45 4 0.04
46 30 0.33
47 52 0.58
48 4 0.04
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (47 bp):
AACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCA
Found at i:27040671 original size:93 final size:93
Alignment explanation
Indices: 27040505--27040765 Score: 369
Period size: 93 Copynumber: 2.8 Consensus size: 93
27040495 AGGATATTTG
* * * *
27040505 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATGCCCGAACTCGTTGGG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAATGCCCGAACTCGTTGAG
27040570 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
27040598 GGCATCCAAATTTGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAATGCCCTAACTCGTTGAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAATGCCCGAACTCGTTGAG
*
27040663 TTGTGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * * * * * * *
27040691 GGCATTCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCTGAGCTCGTTTAG
1 GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAATGCCCGAACTCGTTGAG
27040756 TTGAGTCCGA
66 TTGAGTCCGA
27040766 CTTCTCTTAT
Statistics
Matches: 147, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 147 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GGCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACAAATGCCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:27046745 original size:46 final size:46
Alignment explanation
Indices: 27046684--27046951 Score: 215
Period size: 46 Copynumber: 5.8 Consensus size: 46
27046674 ATTTGGGCAT
* *
27046684 CCGAACTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGGC
* * * *
27046730 CCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--AGGC
* * *
27046775 ATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGGC
* * * * *
27046823 CCGAACTCATTGAGGTGAGTCCGAGTTC-GTGA--GATGTAACTAGGC
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--AGGC
* * * * **
27046868 ATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGTATGCGAACAC
1 --CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGGC
* * *
27046916 CCGAGCTAGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
27046952 GCGGGTTACA
Statistics
Matches: 174, Mismatches: 34, Indels: 28
0.74 0.14 0.12
Matches are distributed among these distances:
43 11 0.06
45 11 0.06
46 82 0.47
47 52 0.30
48 9 0.05
50 9 0.05
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (46 bp):
CCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGGC
Found at i:27046796 original size:47 final size:47
Alignment explanation
Indices: 27046733--27046897 Score: 187
Period size: 47 Copynumber: 3.5 Consensus size: 47
27046723 CAAAGGCCCA
*
27046733 AACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCG
1 AACTCATTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCG
* * * * *
27046780 AACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAA-T--GC--CCG
1 AACTCATTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCG
*
27046826 AACTCATTGAGGTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCG
1 AACTCATTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCG
*
27046873 AGCTCATTGAGTTGAGTCCGAGTTC
1 AACTCATTGAGTTGAGTCCGAGTTC
27046898 ACTTATGTAT
Statistics
Matches: 97, Mismatches: 12, Indels: 18
0.76 0.09 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 4 0.04
46 25 0.26
47 50 0.52
48 4 0.04
50 5 0.05
51 2 0.02
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (47 bp):
AACTCATTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCATCCG
Found at i:27046842 original size:93 final size:93
Alignment explanation
Indices: 27046679--27046944 Score: 390
Period size: 93 Copynumber: 2.9 Consensus size: 93
27046669 AGGATATTTG
* * * * * *
27046679 GGCATCCGAACTTGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAAGGCCCAAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
27046744 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* *
27046772 GGCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAATGCCCGAACTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
*
27046837 GTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * * * *
27046865 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGTATGCGAACACCCGAGCT-AGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCA-TTGA
27046929 GTTGAGTCCGAGTTCG
65 GTTGAGTCCGAGTTCG
27046945 CTTATGGGCG
Statistics
Matches: 156, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
92 1 0.01
93 155 0.99
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:27048459 original size:40 final size:40
Alignment explanation
Indices: 27048397--27048611 Score: 222
Period size: 40 Copynumber: 5.4 Consensus size: 40
27048387 AAGCCAAGTT
* * * * *
27048397 CCTTCGGGAGTTA-ACTGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCTGGATATA-ATAACTCGCACAAATG
* * *
27048436 CCTTCGGGACATAGCCTGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCTGGATATAATAACTCGCACAAATG
* *
27048476 CCTTTGGGACTTAGCGC-GGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGC-CTGGATATAATAACTCGCACAAATG
* *
27048516 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCTGGATATAATAACTCGCACAAATG
* * * * *
27048556 CCTTCGGGACTTAGCC-CGAAACTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCTGGATA-TAATAACTCGCACAAATG
27048596 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
27048612 CGGTTATCAT
Statistics
Matches: 153, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
39 15 0.10
40 137 0.90
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCTGGATATAATAACTCGCACAAATG
Found at i:27048556 original size:80 final size:80
Alignment explanation
Indices: 27048423--27048614 Score: 249
Period size: 80 Copynumber: 2.4 Consensus size: 80
27048413 GGATATAGCT
* * * * * * *
27048423 ACTCGCTCGAATGCCTTCGGGACATAGCCTGGATATAGTAACTCGCACCAATGCCTTTGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATGCCTTCGGGACTT
* * **
27048488 AGCGCGGATGTAATA
66 AGCCCGAAACTAATA
*
27048503 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATGCCTTCGGGACTT
* *
27048568 AGCCCGAAACTAGTC
66 AGCCCGAAACTAATA
*
27048583 ACTAGCACAAATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
27048615 TTATCATCCG
Statistics
Matches: 97, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
80 97 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.22
Consensus pattern (80 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAATGCCTTCGGGACTT
AGCCCGAAACTAATA
Found at i:27053435 original size:34 final size:35
Alignment explanation
Indices: 27053372--27053457 Score: 99
Period size: 34 Copynumber: 2.6 Consensus size: 35
27053362 CTCGTTTCAG
* * *
27053372 TACAGT-CCAATATTAGT-TGGGCCTTAGCCC-AT
1 TACAGTACCAGTATCAGTATGGGCCTCAGCCCAAT
27053404 TACAGTACCAGTATCAGTATGGGCCTCAGCCCAAT
1 TACAGTACCAGTATCAGTATGGGCCTCAGCCCAAT
* *
27053439 T-TAGTAACAGTATCAGTAT
1 TACAGTACCAGTATCAGTAT
27053458 AGAATGCAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
32 6 0.13
33 9 0.20
34 28 0.61
35 3 0.07
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (35 bp):
TACAGTACCAGTATCAGTATGGGCCTCAGCCCAAT
Found at i:27060905 original size:47 final size:47
Alignment explanation
Indices: 27060798--27061136 Score: 527
Period size: 47 Copynumber: 7.1 Consensus size: 47
27060788 GAAATGATAG
27060798 TAAGGCCTAATGGCCGATGTGAATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTG-ATGAATGTGAAAGTG--TATATATGTGA
27060848 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27060895 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27060942 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
27060991 TAGGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27061038 TAAGGCCTAATGGCCGATGTGATGAATGTG-AAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * * *
27061086 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27061133 TAAG
1 TAAG
27061137 TCCCGAAGGG
Statistics
Matches: 272, Mismatches: 12, Indels: 13
0.92 0.04 0.04
Matches are distributed among these distances:
46 5 0.02
47 146 0.54
48 34 0.12
49 66 0.24
50 21 0.08
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:27060984 original size:143 final size:143
Alignment explanation
Indices: 27060798--27061136 Score: 558
Period size: 143 Copynumber: 2.4 Consensus size: 143
27060788 GAAATGATAG
27060798 TAAGGCCTAATGGCCGATGTGAATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
1 TAAGGCCTAATGGCCGATGTG-ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCC
27060863 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
65 GATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG-AA
27060928 GTG-TATATATGTGA
129 GTGATATATATGTGA
*
27060942 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
27061007 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGT
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGT
27061072 GTATATATATGTGA
131 G-ATATATATGTGA
* * * * * * *
27061086 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
27061137 TCCCGAAGGG
Statistics
Matches: 184, Mismatches: 9, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
142 14 0.08
143 105 0.57
144 65 0.35
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (143 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGT
GATATATATGTGA
Found at i:27060998 original size:96 final size:96
Alignment explanation
Indices: 27060801--27061136 Score: 552
Period size: 96 Copynumber: 3.5 Consensus size: 96
27060791 ATGATAGTAA
27060801 GGCCTAATGGCCGATGTGAATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAT
1 GGCCTAATGGCCGATGTG-ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGAT
*
27060866 GTGATGAATGTGAAAGTG--TATATATGTGATAA
63 GTGATGAATGTGAAAGTGTATATATATGTGATAG
27060898 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
27060963 ATGAATGTGAAAGTGTATATATATGTGATAG
66 ATGAATGTGAAAGTGTATATATATGTGATAG
27060994 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
27061059 ATGAATGTG-AAGTGTATATATATGTGACAG
66 ATGAATGTGAAAGTGTATATATATGTGATAG
* * * * * *
27061089 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
27061137 TCCCGAAGGG
Statistics
Matches: 229, Mismatches: 8, Indels: 6
0.94 0.03 0.02
Matches are distributed among these distances:
94 47 0.21
95 62 0.27
96 102 0.45
97 18 0.08
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (96 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
ATGAATGTGAAAGTGTATATATATGTGATAG
Found at i:27061311 original size:37 final size:37
Alignment explanation
Indices: 27061255--27061333 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
27061245 CCGAGCTCTA
* * *
27061255 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
27061292 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
27061329 AAGAC
1 AAGAC
27061334 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:27063247 original size:43 final size:43
Alignment explanation
Indices: 27063199--27063301 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
27063189 TTGGTTTTCA
27063199 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
27063242 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
27063285 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
27063302 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:27063318 original size:29 final size:29
Alignment explanation
Indices: 27063283--27063356 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
27063273 GTTGTGAGAT
* *
27063283 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
27063312 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
27063341 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
27063357 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:27063750 original size:40 final size:39
Alignment explanation
Indices: 27063706--27063803 Score: 115
Period size: 39 Copynumber: 2.5 Consensus size: 39
27063696 AGTGACCATA
* *
27063706 TCCGGACTAAGATCCGAAGCCATTTGTGCGAGTTACTAAT
1 TCCGGACTAAG-CCCGAAGCCATTGGTGCGAGTTACTAAT
* * *
27063746 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGACTAAGCCCGAAGCCATTGGTGCGAGTTACTAAT
* *
27063785 ACCGGGCTAAGTCCCGAAG
1 TCCGGACTAAG-CCCGAAG
27063804 AGCATTCATG
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
39 34 0.67
40 17 0.33
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGCCATTGGTGCGAGTTACTAAT
Found at i:27063774 original size:39 final size:40
Alignment explanation
Indices: 27063666--27063854 Score: 154
Period size: 40 Copynumber: 4.7 Consensus size: 40
27063656 TTGAATGATG
* * *
27063666 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
27063705 ATCCGGACTAAGAT-CCGAAGCCATTTGTGCGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
27063746 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* ** * * **
27063785 ACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTT
1 TCCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTAAT
* *
27063825 TCCGGGCTAAGTTCCGAAGAGCATTCGTGC
1 TCCGGGCTAAGTCCCGAAG-GCATTTGTGC
27063855 TAGTGAGGTA
Statistics
Matches: 123, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 34 0.28
40 67 0.54
41 22 0.18
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:27063830 original size:40 final size:40
Alignment explanation
Indices: 27063786--27063940 Score: 184
Period size: 40 Copynumber: 3.9 Consensus size: 40
27063776 GTTACTAAAA
*
27063786 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTTT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
* * *
27063826 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGAGGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
** * * * * *
27063866 CCGAACTAAGTTCCGAAGAGCATTCGTGCTGGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
* * *
27063906 CCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
27063941 CGTGTATTCG
Statistics
Matches: 98, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 98 1.00
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
Found at i:27067254 original size:25 final size:25
Alignment explanation
Indices: 27067226--27067304 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
27067216 CTAATGGCCG
27067226 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
27067251 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
27067273 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
27067298 ATGTGAT
1 ATGTGAT
27067305 AAGGCCTAAT
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:27067276 original size:47 final size:47
Alignment explanation
Indices: 27067210--27067546 Score: 557
Period size: 47 Copynumber: 7.1 Consensus size: 47
27067200 GAAATGATAG
27067210 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27067257 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27067304 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
27067353 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27067400 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
27067447 TAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * * *
27067496 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
27067543 TAAG
1 TAAG
27067547 TCCGAAGGGC
Statistics
Matches: 274, Mismatches: 12, Indels: 8
0.93 0.04 0.03
Matches are distributed among these distances:
47 188 0.69
49 86 0.31
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:27067384 original size:96 final size:94
Alignment explanation
Indices: 27067210--27067546 Score: 557
Period size: 96 Copynumber: 3.5 Consensus size: 94
27067200 GAAATGATAG
27067210 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
27067275 GTGATGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
27067304 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
27067369 ATGTGATGAATGTGAAAGTGTATATATGTGA
64 ATGTGATGAATGTGAAAGTGTATATATGTGA
27067400 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
27067465 GTGATGAATGTGGAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTG--TATATATGTGA
* * * * * * * *
27067496 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
27067547 TCCGAAGGGC
Statistics
Matches: 230, Mismatches: 9, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
94 82 0.36
96 148 0.64
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (94 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGA
Found at i:27067468 original size:143 final size:143
Alignment explanation
Indices: 27067210--27067546 Score: 593
Period size: 143 Copynumber: 2.4 Consensus size: 143
27067200 GAAATGATAG
27067210 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
27067275 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
27067340 TATATATATGTGA
131 TATATATATGTGA
27067353 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
27067418 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGGAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
27067483 TATATATATGTGA
131 TATATATATGTGA
* * * * * * * *
27067496 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
27067547 TCCGAAGGGC
Statistics
Matches: 185, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
143 185 1.00
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (143 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATATGTGA
Found at i:27067720 original size:37 final size:37
Alignment explanation
Indices: 27067664--27067742 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
27067654 CCGAGCTCTA
* * *
27067664 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
27067701 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
27067738 AAGAC
1 AAGAC
27067743 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:27071611 original size:24 final size:24
Alignment explanation
Indices: 27071581--27071628 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
27071571 AAACTAAGAG
27071581 TCATACTTCATTATATCATAATCA
1 TCATACTTCATTATATCATAATCA
27071605 TCATACTTCATTATATCATAATCA
1 TCATACTTCATTATATCATAATCA
27071629 AACATCAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.42
Consensus pattern (24 bp):
TCATACTTCATTATATCATAATCA
Found at i:27073370 original size:43 final size:42
Alignment explanation
Indices: 27073202--27073371 Score: 123
Period size: 43 Copynumber: 4.0 Consensus size: 42
27073192 ATAGGATTCG
* * *
27073202 ATATGTGATTTCATGTAAGACCACGTCTGGGACGTTGGCATTGA
1 ATAT-TGATTACATGTAAGACCATGTCTGGGACGTTGGCA-TCA
* * * *
27073246 CT-TATGATTTACGTGTAAGACCATGT-TAGGGACATAGGCATC-
1 ATAT-TGA-TTACATGTAAGACCATGTCT-GGGACGTTGGCATCA
* * * * *
27073288 GTATTTGATTTCGTGTAAGACCCTGTCTGGGATAG-TGGCATCA
1 ATA-TTGATTACATGTAAGACCATGTCTGGGA-CGTTGGCATCA
*
27073331 ATATTCGATTACATATAAGACCATGTCTGGGACGTTGGCAT
1 ATATT-GATTACATGTAAGACCATGTCTGGGACGTTGGCAT
27073372 TGTAGGAGCT
Statistics
Matches: 97, Mismatches: 20, Indels: 19
0.71 0.15 0.14
Matches are distributed among these distances:
42 30 0.31
43 40 0.41
44 27 0.28
ACGTcount: A:0.26, C:0.16, G:0.25, T:0.32
Consensus pattern (42 bp):
ATATTGATTACATGTAAGACCATGTCTGGGACGTTGGCATCA
Found at i:27080952 original size:43 final size:41
Alignment explanation
Indices: 27080904--27081066 Score: 116
Period size: 42 Copynumber: 3.9 Consensus size: 41
27080894 ATACGATATG
27080904 TGATTTCGTGTAAGACCATGTCTGGGATGTTGGCATCGACTT
1 TGATTTCGTGTAAGACCATGTCTGGGATGTTGGCATCGA-TT
* * ** ***
27080946 ATGATTTACATGTAAG-CCATGTCAGGGACATCAACATCGTATT
1 -TGATTT-CGTGTAAGACCATGTCTGGGATGTTGGCATCG-ATT
* *
27080989 TGATTTCGTGTAAGACCCTGTTTGGGATAG-TGGCATCGATAT
1 TGATTTCGTGTAAGACCATGTCTGGGAT-GTTGGCATCGAT-T
* * * **
27081031 TCGA-TACATATAAGACCGCGTCTGGGATGTTGGCAT
1 T-GATTTCGTGTAAGACCATGTCTGGGATGTTGGCAT
27081067 TGTACGAGCT
Statistics
Matches: 91, Mismatches: 22, Indels: 15
0.71 0.17 0.12
Matches are distributed among these distances:
41 10 0.11
42 46 0.51
43 27 0.30
44 8 0.09
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.33
Consensus pattern (41 bp):
TGATTTCGTGTAAGACCATGTCTGGGATGTTGGCATCGATT
Found at i:27081828 original size:22 final size:24
Alignment explanation
Indices: 27081797--27081847 Score: 61
Period size: 22 Copynumber: 2.2 Consensus size: 24
27081787 TGGTATGTTT
*
27081797 TTGGTTTATGGAATG-ACATGA-A
1 TTGGTATATGGAATGAACATGAGA
**
27081819 TTGGTATATGTTATGAACATGAGA
1 TTGGTATATGGAATGAACATGAGA
27081843 TTGGT
1 TTGGT
27081848 TGCTAATGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 12 0.50
23 6 0.25
24 6 0.25
ACGTcount: A:0.29, C:0.04, G:0.27, T:0.39
Consensus pattern (24 bp):
TTGGTATATGGAATGAACATGAGA
Done.