Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 87 of 295
Found at i:27452191 original size:38 final size:38
Alignment explanation
Indices: 27452140--27452232 Score: 159
Period size: 38 Copynumber: 2.4 Consensus size: 38
27452130 AAATTAAGAC
* *
27452140 ACATAATAAAAACACATATTCATGATGTTCAAACTAAG
1 ACATAATTAAAACACATATTAATGATGTTCAAACTAAG
27452178 ACATAATTAAAACACATATTAATGATGTTCAAACTAAG
1 ACATAATTAAAACACATATTAATGATGTTCAAACTAAG
27452216 ACATAATTAAAGACACA
1 ACATAATTAAA-ACACA
27452233 AACTAAAATA
Statistics
Matches: 52, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
38 47 0.90
39 5 0.10
ACGTcount: A:0.52, C:0.15, G:0.08, T:0.26
Consensus pattern (38 bp):
ACATAATTAAAACACATATTAATGATGTTCAAACTAAG
Found at i:27452914 original size:20 final size:20
Alignment explanation
Indices: 27452889--27452927 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
27452879 CAGCTTATCT
*
27452889 AGCTCGCTTCTAACTCATTG
1 AGCTCGATTCTAACTCATTG
*
27452909 AGCTCGATTCTATCTCATT
1 AGCTCGATTCTAACTCATT
27452928 TTAATTTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.28, G:0.13, T:0.38
Consensus pattern (20 bp):
AGCTCGATTCTAACTCATTG
Found at i:27453063 original size:46 final size:46
Alignment explanation
Indices: 27453011--27453109 Score: 114
Period size: 46 Copynumber: 2.2 Consensus size: 46
27453001 GTCTTAAATA
* *
27453011 TGTCTTAAGTCT-ATTAA-TGCATCT-TAATTAGTATAGCATTTTAATG
1 TGTCTTAAGTCTAATTAATTG--T-TATAATAAGTACAGCATTTTAATG
* *
27453057 TGTCTTAAGTTTAATTAATTGTTATAATAAGTACAGCTTTTTAATG
1 TGTCTTAAGTCTAATTAATTGTTATAATAAGTACAGCATTTTAATG
27453103 TGTCTTA
1 TGTCTTA
27453110 GATTAAGATA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
45 1 0.02
46 38 0.83
47 5 0.11
48 2 0.04
ACGTcount: A:0.30, C:0.09, G:0.13, T:0.47
Consensus pattern (46 bp):
TGTCTTAAGTCTAATTAATTGTTATAATAAGTACAGCATTTTAATG
Found at i:27463113 original size:18 final size:18
Alignment explanation
Indices: 27463086--27463137 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
27463076 AAACTCTTTT
*
27463086 TCATTCTCTTTTTCAATC
1 TCATTTTCTTTTTCAATC
* *
27463104 TCATTTTCTTTTTCATTT
1 TCATTTTCTTTTTCAATC
* *
27463122 TCTTTTTGTTTTTCAA
1 TCATTTTCTTTTTCAA
27463138 AGGCTTTTTC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.13, C:0.19, G:0.02, T:0.65
Consensus pattern (18 bp):
TCATTTTCTTTTTCAATC
Found at i:27463135 original size:12 final size:12
Alignment explanation
Indices: 27463104--27463128 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
27463094 TTTTTCAATC
27463104 TCATTTTCTTTT
1 TCATTTTCTTTT
27463116 TCATTTTCTTTT
1 TCATTTTCTTTT
27463128 T
1 T
27463129 GTTTTTCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (12 bp):
TCATTTTCTTTT
Found at i:27463207 original size:5 final size:5
Alignment explanation
Indices: 27463197--27463252 Score: 62
Period size: 5 Copynumber: 11.0 Consensus size: 5
27463187 CTTTTGCCTC
*
27463197 TCTTT TCTTT T-TTT TCATTT TCATTT TCTTC T-TTT TCTTTT TCTTT
1 TCTTT TCTTT TCTTT TC-TTT TC-TTT TCTTT TCTTT TC-TTT TCTTT
27463243 TCTTT TCTTT
1 TCTTT TCTTT
27463253 GTTTTCTCGT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
4 7 0.16
5 22 0.49
6 16 0.36
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.79
Consensus pattern (5 bp):
TCTTT
Found at i:27463223 original size:21 final size:20
Alignment explanation
Indices: 27463197--27463248 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 20
27463187 CTTTTGCCTC
27463197 TCTTTTCTTTTTTTTCATTT
1 TCTTTTCTTTTTTTTCATTT
* *
27463217 TCATTTTCTTCTTTTTCTTTT
1 TC-TTTTCTTTTTTTTCATTT
27463238 TCTTTTCTTTT
1 TCTTTTCTTTT
27463249 CTTTGTTTTC
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 10 0.36
21 18 0.64
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.79
Consensus pattern (20 bp):
TCTTTTCTTTTTTTTCATTT
Found at i:27468073 original size:13 final size:13
Alignment explanation
Indices: 27468048--27468083 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 13
27468038 CGGGCTAATA
27468048 AATAAATAATATAT
1 AATAAA-AATATAT
27468062 AATAAAAATATAT
1 AATAAAAATATAT
27468075 AATATAAAA
1 AATA-AAAA
27468084 AATAGGCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 11 0.52
14 10 0.48
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AATAAAAATATAT
Found at i:27474579 original size:15 final size:15
Alignment explanation
Indices: 27474561--27474597 Score: 51
Period size: 13 Copynumber: 2.5 Consensus size: 15
27474551 GTTAATAAAT
27474561 AAAAAATATATAAT-
1 AAAAAATATATAATG
27474575 -AAAAATATATAATG
1 AAAAAATATATAATG
27474589 TAAAAAATA
1 -AAAAAATA
27474598 GACAATAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 13 0.65
16 7 0.35
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (15 bp):
AAAAAATATATAATG
Found at i:27474580 original size:13 final size:13
Alignment explanation
Indices: 27474562--27474587 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27474552 TTAATAAATA
27474562 AAAAATATATAAT
1 AAAAATATATAAT
27474575 AAAAATATATAAT
1 AAAAATATATAAT
27474588 GTAAAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AAAAATATATAAT
Found at i:27478680 original size:42 final size:43
Alignment explanation
Indices: 27478611--27478724 Score: 115
Period size: 43 Copynumber: 2.7 Consensus size: 43
27478601 CATTAACTCA
* *
27478611 TGATTTATGTGTAAGACCATGTTTGGGACA-TCGACATCG-TATT
1 TGATTT-TATGTAAGACCATGTCTGGGACAGT-GACATCGATATT
* * *
27478654 TGATTTTATGTAAGACCCTGTCTGGGATAGTGGCATCGATATT
1 TGATTTTATGTAAGACCATGTCTGGGACAGTGACATCGATATT
** * *
27478697 TGATTACATGTAAGACCACGTCTAGGAC
1 TGATTTTATGTAAGACCATGTCTGGGAC
27478725 GTTGGCATTG
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
42 25 0.43
43 33 0.57
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (43 bp):
TGATTTTATGTAAGACCATGTCTGGGACAGTGACATCGATATT
Found at i:27483843 original size:27 final size:27
Alignment explanation
Indices: 27483795--27483897 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
27483785 CATACCTGAA
* * * *
27483795 CCCTCATGTGATATAATGACGATTTTA
1 CCCTTATGTGATAAAATAACGATTTTG
* *
27483822 CCTTTATGTCATAAAATAACGATTTTG
1 CCCTTATGTGATAAAATAACGATTTTG
* *
27483849 CCCTTATGTGATAAAATGACAATTTTG
1 CCCTTATGTGATAAAATAACGATTTTG
*
27483876 CCCTTATATGATAAAATAACGA
1 CCCTTATGTGATAAAATAACGA
27483898 CTTATACCCT
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 63 1.00
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.36
Consensus pattern (27 bp):
CCCTTATGTGATAAAATAACGATTTTG
Found at i:27483859 original size:54 final size:54
Alignment explanation
Indices: 27483795--27483923 Score: 152
Period size: 54 Copynumber: 2.4 Consensus size: 54
27483785 CATACCTGAA
* * * *
27483795 CCCTCATGTGATATAATGACGATTTTACCTTTATGTCATAAAATAACGATTTTG
1 CCCTCATGTGATAAAATGACAATTTTACCCTTATATCATAAAATAACGATTTTG
* * * * *
27483849 CCCTTATGTGATAAAATGACAATTTTGCCCTTATATGATAAAATAACGACTTATA
1 CCCTCATGTGATAAAATGACAATTTTACCCTTATATCATAAAATAACGA-TTTTG
27483904 CCCTCATAG-GATAAAATGAC
1 CCCTCAT-GTGATAAAATGAC
27483924 CGAAATACCC
Statistics
Matches: 63, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
54 42 0.67
55 20 0.32
56 1 0.02
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (54 bp):
CCCTCATGTGATAAAATGACAATTTTACCCTTATATCATAAAATAACGATTTTG
Found at i:27483938 original size:27 final size:27
Alignment explanation
Indices: 27483901--27484031 Score: 140
Period size: 27 Copynumber: 4.9 Consensus size: 27
27483891 ATAACGACTT
27483901 ATACCCTCATAGGATAAAATGACCGAA
1 ATACCCTCATAGGATAAAATGACCGAA
* * * * *
27483928 ATACCCCCATAGGGTAGAAGGACCAAA
1 ATACCCTCATAGGATAAAATGACCGAA
27483955 ATACCCTCATAGGATAAAATGACCGAA
1 ATACCCTCATAGGATAAAATGACCGAA
* * *
27483982 ATA-CCTCCAAATGG-TAGAATGATCGAA
1 ATACCCT-CATA-GGATAAAATGACCGAA
* *
27484009 ATACCCTTATAGGGTAAAATGAC
1 ATACCCTCATAGGATAAAATGAC
27484032 TACAATACCT
Statistics
Matches: 83, Mismatches: 17, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
26 5 0.06
27 73 0.88
28 5 0.06
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (27 bp):
ATACCCTCATAGGATAAAATGACCGAA
Found at i:27484041 original size:54 final size:54
Alignment explanation
Indices: 27483901--27484031 Score: 190
Period size: 54 Copynumber: 2.4 Consensus size: 54
27483891 ATAACGACTT
* *
27483901 ATACCCTCATAGGATAAAATGACCGAAATACCCCCATAGGGTAGAAGGACCAAA
1 ATACCCTCATAGGATAAAATGACCGAAATACCTCCAAAGGGTAGAAGGACCAAA
* * * *
27483955 ATACCCTCATAGGATAAAATGACCGAAATACCTCCAAATGGTAGAATGATCGAA
1 ATACCCTCATAGGATAAAATGACCGAAATACCTCCAAAGGGTAGAAGGACCAAA
* *
27484009 ATACCCTTATAGGGTAAAATGAC
1 ATACCCTCATAGGATAAAATGAC
27484032 TACAATACCT
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
54 69 1.00
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (54 bp):
ATACCCTCATAGGATAAAATGACCGAAATACCTCCAAAGGGTAGAAGGACCAAA
Found at i:27484492 original size:34 final size:34
Alignment explanation
Indices: 27484454--27484546 Score: 107
Period size: 34 Copynumber: 2.7 Consensus size: 34
27484444 CTGATTATTA
* *
27484454 TTACTGAAACAGGCTAAAGCCCAGACTTG-TACTG
1 TTACTGAAATAGGCTAAGGCCCAGAC-TGCTACTG
* * *
27484488 TTACTAAAATGGGCTAAGGCCTAGACTGCTACTG
1 TTACTGAAATAGGCTAAGGCCCAGACTGCTACTG
* *
27484522 TTACTGATATAGGCTTAGGCCCAGA
1 TTACTGAAATAGGCTAAGGCCCAGA
27484547 ATGTATTCAC
Statistics
Matches: 48, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
33 2 0.04
34 46 0.96
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.26
Consensus pattern (34 bp):
TTACTGAAATAGGCTAAGGCCCAGACTGCTACTG
Found at i:27485179 original size:81 final size:82
Alignment explanation
Indices: 27485023--27485184 Score: 227
Period size: 81 Copynumber: 2.0 Consensus size: 82
27485013 TTTTCAAACA
* * *
27485023 TTATCACGTTTTACAAAAAAAAACATCAATGTGACATCACCAGATTTGGCCATAACATCTAGCCC
1 TTATCACATTTTACAAAAAAAAACATCAATGTGACATCACCAGACTTGGCCATAACATCTAGCAC
* *
27485088 TGTATGGGGTGTTACAT
66 GGTATAGGGTGTTACAT
* * * * *
27485105 TTATCACATTTTAC-GAAAAATACTTCAATGTGACATCACCAGACTTGGCCATAACATCTAGGAG
1 TTATCACATTTTACAAAAAAAAACATCAATGTGACATCACCAGACTTGGCCATAACATCTAGCAC
27485169 GGTATAGGGTGTTACA
66 GGTATAGGGTGTTACA
27485185 GAAATAACAG
Statistics
Matches: 70, Mismatches: 10, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
81 57 0.81
82 13 0.19
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (82 bp):
TTATCACATTTTACAAAAAAAAACATCAATGTGACATCACCAGACTTGGCCATAACATCTAGCAC
GGTATAGGGTGTTACAT
Found at i:27488418 original size:20 final size:20
Alignment explanation
Indices: 27488402--27488533 Score: 210
Period size: 20 Copynumber: 6.6 Consensus size: 20
27488392 CTATATTTAA
27488402 GGCTTTGTGCCACTATTGAT
1 GGCTTTGTGCCACTATTGAT
*
27488422 GGCTTTGTGCCACTACTGAT
1 GGCTTTGTGCCACTATTGAT
* *
27488442 GGCTTTGTGCCGCTATTTAT
1 GGCTTTGTGCCACTATTGAT
27488462 GGCTTTGTGCCACTATTGAT
1 GGCTTTGTGCCACTATTGAT
*
27488482 GGCTTTGTACCACTATTGAT
1 GGCTTTGTGCCACTATTGAT
* *
27488502 GGCTTTGTGCCACTACTCAT
1 GGCTTTGTGCCACTATTGAT
27488522 GGCTTTGTGCCA
1 GGCTTTGTGCCA
27488534 TATACTGATA
Statistics
Matches: 102, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 102 1.00
ACGTcount: A:0.14, C:0.23, G:0.24, T:0.39
Consensus pattern (20 bp):
GGCTTTGTGCCACTATTGAT
Found at i:27488572 original size:26 final size:26
Alignment explanation
Indices: 27488542--27488617 Score: 98
Period size: 26 Copynumber: 2.9 Consensus size: 26
27488532 CATATACTGA
* * * *
27488542 TACTGGTAGCTTTGTTGCGTTACTAT
1 TACTGGCAACTTTGCTGCGATACTAT
*
27488568 TACTGGCAACTTTGCTGCGATATTAT
1 TACTGGCAACTTTGCTGCGATACTAT
*
27488594 TACTGGCAACTATGCTGCGATACT
1 TACTGGCAACTTTGCTGCGATACT
27488618 GGTGTGTTGG
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (26 bp):
TACTGGCAACTTTGCTGCGATACTAT
Found at i:27492583 original size:43 final size:43
Alignment explanation
Indices: 27492426--27492584 Score: 142
Period size: 43 Copynumber: 3.7 Consensus size: 43
27492416 TATGTGTTTT
* * * *
27492426 CGTGTAAGACCACATCTGGAACGTTGGCATCGACTA-ATGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGA-TTA
* * *** *
27492470 CGTGTAAGACCATGTTTGGGACATCAACATCG-TATTTGATTT
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
* * * *
27492512 CGTGTAAGACCCCGTCTGCGATAGTGGCATCGATATTTGATTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
* *
27492555 CATGTAAGACCACGTTTGGGACATTGGCAT
1 CGTGTAAGACCACGTCTGGGACATTGGCAT
27492585 TGTACGTGCT
Statistics
Matches: 87, Mismatches: 26, Indels: 5
0.74 0.22 0.04
Matches are distributed among these distances:
42 27 0.31
43 36 0.41
44 24 0.28
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.30
Consensus pattern (43 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTA
Found at i:27504876 original size:29 final size:29
Alignment explanation
Indices: 27504834--27504891 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
27504824 TTCAACTGAC
27504834 GATAATCTATACACATTCTCATCGTACCT
1 GATAATCTATACACATTCTCATCGTACCT
27504863 GATAATCTATACACATTCTCATCGTACCT
1 GATAATCTATACACATTCTCATCGTACCT
27504892 TCTTTCTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (29 bp):
GATAATCTATACACATTCTCATCGTACCT
Found at i:27508572 original size:23 final size:23
Alignment explanation
Indices: 27508515--27508573 Score: 100
Period size: 23 Copynumber: 2.6 Consensus size: 23
27508505 ACATCGCAGT
*
27508515 AAAGCTGCTAACAGTAACGCAAC
1 AAAGCTGCTAATAGTAACGCAAC
*
27508538 AAAGCTGCTAATAGTAATGCAAC
1 AAAGCTGCTAATAGTAACGCAAC
27508561 AAAGCTGCTAATA
1 AAAGCTGCTAATA
27508574 ACAGTAAACA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.44, C:0.20, G:0.17, T:0.19
Consensus pattern (23 bp):
AAAGCTGCTAATAGTAACGCAAC
Found at i:27514684 original size:40 final size:40
Alignment explanation
Indices: 27514617--27514873 Score: 315
Period size: 40 Copynumber: 6.5 Consensus size: 40
27514607 ACCCAAGTAT
*
27514617 CTTCGGGAT-TTAG-CCGGATATAACAACTCGCACAAATGC
1 CTTCGGG-TCTTAGCCCGGATATAGCAACTCGCACAAATGC
*
27514656 CCTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * * *
27514696 CTTCGCGTCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* *
27514736 CTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* * * *
27514776 CTTCGGATCTTAGCCCGGATATAATC-ACTAGCATAAATGC
1 CTTCGGGTCTTAGCCCGGATAT-AGCAACTCGCACAAATGC
* *
27514816 CTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATGC
1 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
* *
27514856 CTTCGGATCTTAGTCCGG
1 CTTCGGGTCTTAGCCCGG
27514874 TTATCATCCG
Statistics
Matches: 183, Mismatches: 29, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
38 1 0.01
39 14 0.08
40 164 0.90
41 4 0.02
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACAAATGC
Found at i:27514750 original size:80 final size:80
Alignment explanation
Indices: 27514617--27514873 Score: 405
Period size: 80 Copynumber: 3.2 Consensus size: 80
27514607 ACCCAAGTAT
* * * * *
27514617 CTTCGGGAT-TTAG-CCGGATATAA-CAACTCGCACAAATGCCCTCGGGTCTTAGCCCGGATATA
1 CTTC-GGATCTTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGACATAGCCCGGATATA
27514679 GCAACTCGCACAAATGC
64 GCAACTCGCACAAATGC
27514696 CTTCGCG-TCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAG
1 CTTCG-GATCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAG
27514760 CAACTCGCACAAATGC
65 CAACTCGCACAAATGC
27514776 CTTCGGATCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
1 CTTCGGATCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
27514841 AACTCGCACAAATGC
66 AACTCGCACAAATGC
*
27514856 CTTCGGATCTTAGTCCGG
1 CTTCGGATCTTAGCCCGG
27514874 TTATCATCCG
Statistics
Matches: 167, Mismatches: 6, Indels: 9
0.92 0.03 0.05
Matches are distributed among these distances:
78 2 0.01
79 10 0.06
80 154 0.92
81 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (80 bp):
CTTCGGATCTTAGCCCGGATATAATCACTAGCATAAATGCCTTCGGGACATAGCCCGGATATAGC
AACTCGCACAAATGC
Found at i:27526641 original size:40 final size:40
Alignment explanation
Indices: 27526597--27526823 Score: 283
Period size: 40 Copynumber: 5.7 Consensus size: 40
27526587 CGACAAAAAA
* * * *
27526597 TCGGCTATTTGTGGCATTTAGTGTGCGATTCGACATAGTT
1 TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
* *
27526637 TCGGCTACATATGGCACTTAGTGTACGATTCGACATAGCT
1 TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
* *
27526677 TCGGCTATATATGGCACTTAGTGTGTGATTTGACATAGCT
1 TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
* * * * *
27526717 TCAGCTATTTCTAGCGCTTAGTGTGCGATTCGACATAGCT
1 TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
* * * * *
27526757 TTGGCTATATATGGCACTTAGTGTGTGATTTGAGATAACT
1 TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
*
27526797 TCGGCTATGTATGGCACTTAGTGTGCG
1 TCGGCTATATATGGCACTTAGTGTGCG
27526824 TGACATTGAA
Statistics
Matches: 157, Mismatches: 30, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 157 1.00
ACGTcount: A:0.21, C:0.17, G:0.26, T:0.36
Consensus pattern (40 bp):
TCGGCTATATATGGCACTTAGTGTGCGATTCGACATAGCT
Found at i:27530277 original size:38 final size:38
Alignment explanation
Indices: 27530235--27530312 Score: 156
Period size: 38 Copynumber: 2.1 Consensus size: 38
27530225 GATTTGAAAG
27530235 TATGAAAATAAGCTAAAATCAACTGATTGGATCAACTA
1 TATGAAAATAAGCTAAAATCAACTGATTGGATCAACTA
27530273 TATGAAAATAAGCTAAAATCAACTGATTGGATCAACTA
1 TATGAAAATAAGCTAAAATCAACTGATTGGATCAACTA
27530311 TA
1 TA
27530313 GGGACAATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.27
Consensus pattern (38 bp):
TATGAAAATAAGCTAAAATCAACTGATTGGATCAACTA
Found at i:27532807 original size:46 final size:46
Alignment explanation
Indices: 27532742--27533062 Score: 421
Period size: 46 Copynumber: 7.0 Consensus size: 46
27532732 TTATCTTTGA
* * * * *
27532742 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATAT
* *
27532788 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* * * * **
27532834 CACGCTGCCATAGTATCTTTCAACCATGGTCTTATTCATTTCCCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
*
27532880 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* *
27532926 CAAGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* * *
27532971 CAGGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
* * *
27533017 CAGGTTGCCATGGTATCTTTCGACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
27533063 TAGAGAGCAC
Statistics
Matches: 250, Mismatches: 23, Indels: 4
0.90 0.08 0.01
Matches are distributed among these distances:
45 47 0.19
46 203 0.81
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATAT
Found at i:27538871 original size:11 final size:11
Alignment explanation
Indices: 27538852--27538882 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
27538842 TAAATGAAAT
*
27538852 TATGTGTAACG
1 TATGAGTAACG
27538863 TATGAGTAACG
1 TATGAGTAACG
27538874 TATGAGTAA
1 TATGAGTAA
27538883 TAAGCTCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.35, C:0.06, G:0.26, T:0.32
Consensus pattern (11 bp):
TATGAGTAACG
Found at i:27553559 original size:27 final size:27
Alignment explanation
Indices: 27553529--27553842 Score: 143
Period size: 27 Copynumber: 11.6 Consensus size: 27
27553519 GGTAAATCTA
*
27553529 CAAACCAAGGGTATTTCGATAATTTTG
1 CAAATCAAGGGTATTTCGATAATTTTG
* * *
27553556 CAAACCAATGGTATTTCTATAATTTTTTG
1 CAAATCAAGGGTATTTCGATAA--TTTTG
* * *
27553585 -AAAGTCATGGGTATTTTTG-TAATTTTC
1 CAAA-TCAAGGGTA-TTTCGATAATTTTG
*** *
27553612 CAAATTGGGGGTATTTCGATAATTTTA
1 CAAATCAAGGGTATTTCGATAATTTTG
* *
27553639 CAAATCGAGGGTATTTC-AGTAATTTTA
1 CAAATCAAGGGTATTTCGA-TAATTTTG
** *
27553666 CAGGTCAAGGGTATCTCTG-TAATTTTG
1 CAAATCAAGGGTATTTC-GATAATTTTG
* * * * *
27553693 TAAATCAGGGGTATTTTGGTAATTTTA
1 CAAATCAAGGGTATTTCGATAATTTTG
* * * * * *
27553720 CTAATCGAGGATATTTTGGTAA-TTTA
1 CAAATCAAGGGTATTTCGATAATTTTG
** * * * **
27553746 CAGGTTAAGGGTATGTCGGTAATTTCA
1 CAAATCAAGGGTATTTCGATAATTTTG
* * *
27553773 CAAATCAGGGGTATTTTGGTAATTTTG
1 CAAATCAAGGGTATTTCGATAATTTTG
* * * * *
27553800 CTAATCGAGGATATTTTGGTAATTTTG
1 CAAATCAAGGGTATTTCGATAATTTTG
* *
27553827 TAAAGCAAGGGTATTT
1 CAAATCAAGGGTATTT
27553843 TAGTAATTCT
Statistics
Matches: 218, Mismatches: 58, Indels: 22
0.73 0.19 0.07
Matches are distributed among these distances:
26 24 0.11
27 171 0.78
28 6 0.03
29 14 0.06
30 3 0.01
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (27 bp):
CAAATCAAGGGTATTTCGATAATTTTG
Found at i:27553787 original size:80 final size:80
Alignment explanation
Indices: 27553619--27553824 Score: 286
Period size: 80 Copynumber: 2.6 Consensus size: 80
27553609 TTCCAAATTG
* * * * ** *
27553619 GGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCAGTAATTTTACAGGTCAAGGGTATCTCT
1 GGGGTATTTTGGTAATTTTACTAATCGAGGATATTTTGGTAA-TTTACAGGTCAAGGGTATCTCG
***
27553684 GTAATTTTGTAAATCA
65 GTAATTTCACAAATCA
* *
27553700 GGGGTATTTTGGTAATTTTACTAATCGAGGATATTTTGGTAATTTACAGGTTAAGGGTATGTCGG
1 GGGGTATTTTGGTAATTTTACTAATCGAGGATATTTTGGTAATTTACAGGTCAAGGGTATCTCGG
27553765 TAATTTCACAAATCA
66 TAATTTCACAAATCA
*
27553780 GGGGTATTTTGGTAATTTTGCTAATCGAGGATATTTTGGTAATTT
1 GGGGTATTTTGGTAATTTTACTAATCGAGGATATTTTGGTAATTT
27553825 TGTAAAGCAA
Statistics
Matches: 112, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
80 76 0.68
81 36 0.32
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (80 bp):
GGGGTATTTTGGTAATTTTACTAATCGAGGATATTTTGGTAATTTACAGGTCAAGGGTATCTCGG
TAATTTCACAAATCA
Found at i:27556470 original size:27 final size:26
Alignment explanation
Indices: 27556430--27556541 Score: 98
Period size: 27 Copynumber: 4.2 Consensus size: 26
27556420 AACATGGCTG
* *
27556430 CCAGAACAGCTAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGACAGAGCCA
**
27556456 CCAGATACAGATAATCGTCCCAGAGCCA
1 CCAGA-ACAGATAAT-GTGACAGAGCCA
* * *
27556484 CCAGAATAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
* * *
27556511 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGACAGAGCCA
27556538 CCAG
1 CCAG
27556542 GACACTTCCT
Statistics
Matches: 70, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
26 6 0.09
27 48 0.69
28 16 0.23
ACGTcount: A:0.37, C:0.25, G:0.22, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:27564307 original size:28 final size:28
Alignment explanation
Indices: 27564275--27564367 Score: 120
Period size: 27 Copynumber: 3.4 Consensus size: 28
27564265 ACTAATATGA
* *
27564275 CAGAGTCACCAGATACAGATAATCGTGG
1 CAGAGCCACCAGATACAGATAATTGTGG
*
27564303 CAGAGCCACCAGA-ATAGA-AATATGTGG
1 CAGAGCCACCAGATACAGATAAT-TGTGG
27564330 CAGAGCCACCAGAT-CAGATAATTGTGG
1 CAGAGCCACCAGATACAGATAATTGTGG
*
27564357 CATAGCCACCA
1 CAGAGCCACCA
27564368 AGACGCTTCC
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
26 3 0.05
27 39 0.68
28 15 0.26
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.16
Consensus pattern (28 bp):
CAGAGCCACCAGATACAGATAATTGTGG
Found at i:27565803 original size:24 final size:24
Alignment explanation
Indices: 27565787--27565846 Score: 120
Period size: 24 Copynumber: 2.5 Consensus size: 24
27565777 CCCTTACCTG
27565787 CTCCTAAATCCTATCCCTTATCAA
1 CTCCTAAATCCTATCCCTTATCAA
27565811 CTCCTAAATCCTATCCCTTATCAA
1 CTCCTAAATCCTATCCCTTATCAA
27565835 CTCCTAAATCCT
1 CTCCTAAATCCT
27565847 CTCCTGACAG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.28, C:0.38, G:0.00, T:0.33
Consensus pattern (24 bp):
CTCCTAAATCCTATCCCTTATCAA
Found at i:27570301 original size:25 final size:25
Alignment explanation
Indices: 27570272--27570323 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
27570262 TTTAATTGAG
27570272 TTAATTTTTTTGTATATTTTGTCCT
1 TTAATTTTTTTGTATATTTTGTCCT
27570297 TTAATTTTTTTGTATATTTTGTCCT
1 TTAATTTTTTTGTATATTTTGTCCT
27570322 TT
1 TT
27570324 TTTGGCTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.69
Consensus pattern (25 bp):
TTAATTTTTTTGTATATTTTGTCCT
Found at i:27574422 original size:43 final size:43
Alignment explanation
Indices: 27574355--27574473 Score: 118
Period size: 42 Copynumber: 2.8 Consensus size: 43
27574345 CAACTACAAC
* * *
27574355 GCCGACGTCCCGGAC-GTGGTCTTACATGTAATTCA-ATATCGAT
1 GCCGATGTCCCAGACAG-GGTCTTACATGTAAATCAGATA-CGAT
** *
27574398 GCCTCTGTCCCAGACAGGGTCTTACAAG-AAATCAGATACGAT
1 GCCGATGTCCCAGACAGGGTCTTACATGTAAATCAGATACGAT
* * *
27574440 GTCGATGTCCCAGACATGGTCTTATATGTAAATC
1 GCCGATGTCCCAGACAGGGTCTTACATGTAAATC
27574474 TCAATCGAGG
Statistics
Matches: 61, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
42 31 0.51
43 29 0.48
44 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (43 bp):
GCCGATGTCCCAGACAGGGTCTTACATGTAAATCAGATACGAT
Found at i:27582335 original size:28 final size:27
Alignment explanation
Indices: 27582283--27582355 Score: 76
Period size: 27 Copynumber: 2.6 Consensus size: 27
27582273 CCATACAAGT
*
27582283 CCAAATAACACATTTAATTCACAATTTAGTC
1 CCAAATAACTCATTT--TT-ACAATTTAG-C
27582314 CCTAAA-AACTCATTTTTACAATTTAGC
1 CC-AAATAACTCATTTTTACAATTTAGC
*
27582341 CCAAATAGCTCATTT
1 CCAAATAACTCATTT
27582356 CATCAAAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
26 3 0.08
27 11 0.29
28 9 0.24
29 2 0.05
31 10 0.26
32 3 0.08
ACGTcount: A:0.38, C:0.23, G:0.04, T:0.34
Consensus pattern (27 bp):
CCAAATAACTCATTTTTACAATTTAGC
Found at i:27590278 original size:20 final size:20
Alignment explanation
Indices: 27590248--27590311 Score: 103
Period size: 20 Copynumber: 3.2 Consensus size: 20
27590238 CTATTTTGTT
27590248 ATGGG-CCAACTGTATTGAA
1 ATGGGCCCAACTGTATTGAA
27590267 ATGGGCCCAACTGTATTGAA
1 ATGGGCCCAACTGTATTGAA
* *
27590287 ATGGGCCCAACTGTGTTGAT
1 ATGGGCCCAACTGTATTGAA
27590307 ATGGG
1 ATGGG
27590312 TTAAGGCCCA
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
19 5 0.12
20 37 0.88
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTGAA
Found at i:27594653 original size:19 final size:20
Alignment explanation
Indices: 27594631--27594674 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
27594621 CTGTTTTGTT
27594631 ATGGG-CCAACTGTATTGAA
1 ATGGGCCCAACTGTATTGAA
*
27594650 ATGGGCCCAACTGTATTGAT
1 ATGGGCCCAACTGTATTGAA
27594670 ATGGG
1 ATGGG
27594675 TTAAGGCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 5 0.22
20 18 0.78
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (20 bp):
ATGGGCCCAACTGTATTGAA
Found at i:27597173 original size:13 final size:13
Alignment explanation
Indices: 27597155--27597180 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27597145 GCGTGTGGGC
27597155 CCACACAAGCATG
1 CCACACAAGCATG
27597168 CCACACAAGCATG
1 CCACACAAGCATG
27597181 TGGGTTTTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.38, G:0.15, T:0.08
Consensus pattern (13 bp):
CCACACAAGCATG
Found at i:27598895 original size:24 final size:24
Alignment explanation
Indices: 27598838--27598898 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
27598828 CCAGGTAGGT
* ***
27598838 ACAAAGCCCGATAAACACACTGGC
1 ACAAAGCCTGATAAACACACCAAC
* *
27598862 AAAAAACCTGATAAACACACCAAC
1 ACAAAGCCTGATAAACACACCAAC
27598886 ACAAAGCCTGATA
1 ACAAAGCCTGATA
27598899 GATAACACTG
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.49, C:0.30, G:0.11, T:0.10
Consensus pattern (24 bp):
ACAAAGCCTGATAAACACACCAAC
Found at i:27609435 original size:40 final size:40
Alignment explanation
Indices: 27609214--27609431 Score: 332
Period size: 40 Copynumber: 5.5 Consensus size: 40
27609204 AAACCAAGTA
* * *
27609214 CCTTTGGGAATTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
27609253 CCTTCGGGATTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
27609293 CCTTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
27609333 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
27609373 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
27609413 CCTTCGGTACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
27609432 TTATCATCCA
Statistics
Matches: 165, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
39 13 0.08
40 152 0.92
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:27620258 original size:276 final size:276
Alignment explanation
Indices: 27619765--27620318 Score: 1099
Period size: 276 Copynumber: 2.0 Consensus size: 276
27619755 TTTCTGTAAA
27619765 CCACTGACTCATTAAATCAAAAAGTCATTTTGATTTCACTATCAGACAATTATAAGACCTATAAA
1 CCACTGACTCATTAAATCAAAAAGTCATTTTGATTTCACTATCAGACAATTATAAGACCTATAAA
*
27619830 CTGTAACGCCTCAAAAATCTTTAATGTTTATCTTTGTATGTTTATGTTACACAAATGCATGTCTA
66 CTGTAACGCCTCAAAAATCCTTAATGTTTATCTTTGTATGTTTATGTTACACAAATGCATGTCTA
27619895 CTTCAATGGTTAAGTGTCCTGGGAAGAGGCTAAGAAGTCTTGGGTTCAAGCCTTGGCTTGTGCAA
131 CTTCAATGGTTAAGTGTCCTGGGAAGAGGCTAAGAAGTCTTGGGTTCAAGCCTTGGCTTGTGCAA
27619960 AAGTTTTGTTTTAAATGGATAAACCCCTGTCTCTAGTCAGTAGGTTTATAAATAAATATGGGTAT
196 AAGTTTTGTTTTAAATGGATAAACCCCTGTCTCTAGTCAGTAGGTTTATAAATAAATATGGGTAT
27620025 AACATGACAGAATGGG
261 AACATGACAGAATGGG
27620041 CCACTGACTCATTAAATCAAAAAGTCATTTTGATTTCACTATCAGACAATTATAAGACCTATAAA
1 CCACTGACTCATTAAATCAAAAAGTCATTTTGATTTCACTATCAGACAATTATAAGACCTATAAA
27620106 CTGTAACGCCTCAAAAATCCTTAATGTTTATCTTTGTATGTTTATGTTACACAAATGCATGTCTA
66 CTGTAACGCCTCAAAAATCCTTAATGTTTATCTTTGTATGTTTATGTTACACAAATGCATGTCTA
27620171 CTTCAATGGTTAAGTGTCCTGGGAAGAGGCTAAGAAGTCTTGGGTTCAAGCCTTGGCTTGTGCAA
131 CTTCAATGGTTAAGTGTCCTGGGAAGAGGCTAAGAAGTCTTGGGTTCAAGCCTTGGCTTGTGCAA
27620236 AAGTTTTGTTTTAAATGGATAAACCCCTGTCTCTAGTCAGTAGGTTTATAAATAAATATGGGTAT
196 AAGTTTTGTTTTAAATGGATAAACCCCTGTCTCTAGTCAGTAGGTTTATAAATAAATATGGGTAT
27620301 AACATGACAGAATGGG
261 AACATGACAGAATGGG
27620317 CC
1 CC
27620319 TGCTGGTCTG
Statistics
Matches: 277, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
276 277 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.33
Consensus pattern (276 bp):
CCACTGACTCATTAAATCAAAAAGTCATTTTGATTTCACTATCAGACAATTATAAGACCTATAAA
CTGTAACGCCTCAAAAATCCTTAATGTTTATCTTTGTATGTTTATGTTACACAAATGCATGTCTA
CTTCAATGGTTAAGTGTCCTGGGAAGAGGCTAAGAAGTCTTGGGTTCAAGCCTTGGCTTGTGCAA
AAGTTTTGTTTTAAATGGATAAACCCCTGTCTCTAGTCAGTAGGTTTATAAATAAATATGGGTAT
AACATGACAGAATGGG
Found at i:27627092 original size:33 final size:33
Alignment explanation
Indices: 27627055--27627122 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
27627045 ATTGAACAAT
*
27627055 TGGGATAAGTAAAGTTGTTCAAAATCCATAGAA
1 TGGGATAAGTAAAGTTATTCAAAATCCATAGAA
27627088 TGGGATAAGTAAAGTTATTCAAAATCCATAGAA
1 TGGGATAAGTAAAGTTATTCAAAATCCATAGAA
27627121 TG
1 TG
27627123 CATGCATAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.43, C:0.09, G:0.21, T:0.28
Consensus pattern (33 bp):
TGGGATAAGTAAAGTTATTCAAAATCCATAGAA
Found at i:27628025 original size:15 final size:15
Alignment explanation
Indices: 27628005--27628049 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
27627995 TATTGTATTT
27628005 TGGATTTCTTTATCA
1 TGGATTTCTTTATCA
* *
27628020 TGGATTTCTTTGTCT
1 TGGATTTCTTTATCA
*
27628035 TAGGACTTCTTTATC
1 T-GGATTTCTTTATC
27628050 TTGGTTTTCA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
15 14 0.56
16 11 0.44
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.53
Consensus pattern (15 bp):
TGGATTTCTTTATCA
Found at i:27630589 original size:14 final size:16
Alignment explanation
Indices: 27630570--27630608 Score: 55
Period size: 14 Copynumber: 2.6 Consensus size: 16
27630560 AAGAAAATGA
*
27630570 TGATATATGACA-A-G
1 TGATATATGAAATAGG
27630584 TGATATATGAAATAGG
1 TGATATATGAAATAGG
27630600 TGATATATG
1 TGATATATG
27630609 TTATGTAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 11 0.50
15 1 0.05
16 10 0.45
ACGTcount: A:0.41, C:0.03, G:0.23, T:0.33
Consensus pattern (16 bp):
TGATATATGAAATAGG
Found at i:27630940 original size:43 final size:43
Alignment explanation
Indices: 27630866--27630947 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
27630856 GATATATGTG
* * * *
27630866 GCATCCGAGCTCGTTGAGTGGTTCGATTTCATTATGGATACGA
1 GCATCCGAGCTCGTTGAGTGGTCCAAGTTCATAATGGATACGA
27630909 GCATCCGAGCTCGTTGAGTGGTCCAAGTTCATAATGGAT
1 GCATCCGAGCTCGTTGAGTGGTCCAAGTTCATAATGGAT
27630948 GCGATACATG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (43 bp):
GCATCCGAGCTCGTTGAGTGGTCCAAGTTCATAATGGATACGA
Found at i:27632580 original size:22 final size:22
Alignment explanation
Indices: 27632555--27632620 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 22
27632545 GATTATCTTA
27632555 TGGCATGTATAAAATAGACTAG
1 TGGCATGTATAAAATAGACTAG
* * *
27632577 TGGC--GGA-AGAATA-TCTTA-
1 TGGCATGTATAAAATAGAC-TAG
27632595 TGGCATGTATAAAATAGACTAG
1 TGGCATGTATAAAATAGACTAG
27632617 TGGC
1 TGGC
27632621 GGAAGAATAT
Statistics
Matches: 32, Mismatches: 6, Indels: 12
0.64 0.12 0.24
Matches are distributed among these distances:
18 5 0.16
19 7 0.22
20 4 0.12
21 7 0.22
22 9 0.28
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.27
Consensus pattern (22 bp):
TGGCATGTATAAAATAGACTAG
Found at i:27632603 original size:40 final size:40
Alignment explanation
Indices: 27632548--27632630 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
27632538 CTATATGGAT
27632548 TATCTTATGGCATGTATAAAATAGACTAGTGGCGGAAGAA
1 TATCTTATGGCATGTATAAAATAGACTAGTGGCGGAAGAA
27632588 TATCTTATGGCATGTATAAAATAGACTAGTGGCGGAAGAA
1 TATCTTATGGCATGTATAAAATAGACTAGTGGCGGAAGAA
27632628 TAT
1 TAT
27632631 TTTGGTTAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (40 bp):
TATCTTATGGCATGTATAAAATAGACTAGTGGCGGAAGAA
Found at i:27633999 original size:43 final size:43
Alignment explanation
Indices: 27633951--27634053 Score: 188
Period size: 43 Copynumber: 2.4 Consensus size: 43
27633941 TTGGTTTTCA
27633951 GCACTAAGTGTGCGGGCAATAAGGGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGGGTTCACGGTTGTGAGATTG
* *
27633994 GCACTAAGTGTGCTGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGGGTTCACGGTTGTGAGATTG
27634037 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
27634054 TTGAAATGCA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGGGTTCACGGTTGTGAGATTG
Found at i:27634070 original size:29 final size:29
Alignment explanation
Indices: 27634035--27634108 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
27634025 GTTGTGAGAT
* *
27634035 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
27634064 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
27634093 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
27634109 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:27634542 original size:40 final size:40
Alignment explanation
Indices: 27634419--27634774 Score: 360
Period size: 40 Copynumber: 8.9 Consensus size: 40
27634409 TCGAAAGATG
** *
27634419 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
27634459 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
* *
27634499 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
27634539 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
27634579 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAATGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
27634619 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
27634659 TCCGAGCTAAGTTCTGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * * *
27634699 TCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
27634739 TCCGGGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
27634775 CGTGTATTCG
Statistics
Matches: 267, Mismatches: 45, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.00
40 248 0.93
41 18 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:27634632 original size:120 final size:120
Alignment explanation
Indices: 27634419--27634769 Score: 404
Period size: 120 Copynumber: 2.9 Consensus size: 120
27634409 TCGAAAGATG
* * *
27634419 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG-GCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATATCCGGGCTAAGATCCGAAGAGCA
* * * *
27634481 TTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
64 TTCGTGCTAGTGA-TATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
* * *
27634539 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGATCCGAAGAGCATT
* * * * *
27634604 CATGCTAATGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTA
66 CGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
* * * * * *
27634659 TCCGAGCTAAGTTCTGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAA-ACCCCAAAGAGCAT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGA-TCCGAAGAGCAT
* * * * *
27634723 TCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGTAATCATGCT
65 TCGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCT
27634770 GGTGACGTGT
Statistics
Matches: 194, Mismatches: 33, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
120 170 0.88
121 18 0.09
122 6 0.03
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGATCCGAAGAGCATT
CGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
Found at i:27636649 original size:22 final size:22
Alignment explanation
Indices: 27636624--27636689 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 22
27636614 GATTATCTTA
27636624 TGGCATGTATAAAATAGACTAG
1 TGGCATGTATAAAATAGACTAG
* * *
27636646 TGGC--GGA-AGAATA-TCTTA-
1 TGGCATGTATAAAATAGAC-TAG
27636664 TGGCATGTATAAAATAGACTAG
1 TGGCATGTATAAAATAGACTAG
27636686 TGGC
1 TGGC
27636690 GGAAGAATAT
Statistics
Matches: 32, Mismatches: 6, Indels: 12
0.64 0.12 0.24
Matches are distributed among these distances:
18 5 0.16
19 7 0.22
20 4 0.12
21 7 0.22
22 9 0.28
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.27
Consensus pattern (22 bp):
TGGCATGTATAAAATAGACTAG
Found at i:27636672 original size:40 final size:40
Alignment explanation
Indices: 27636617--27636699 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
27636607 CTATATGGAT
27636617 TATCTTATGGCATGTATAAAATAGACTAGTGGCGGAAGAA
1 TATCTTATGGCATGTATAAAATAGACTAGTGGCGGAAGAA
27636657 TATCTTATGGCATGTATAAAATAGACTAGTGGCGGAAGAA
1 TATCTTATGGCATGTATAAAATAGACTAGTGGCGGAAGAA
27636697 TAT
1 TAT
27636700 TTTGGTTAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (40 bp):
TATCTTATGGCATGTATAAAATAGACTAGTGGCGGAAGAA
Found at i:27638054 original size:43 final size:43
Alignment explanation
Indices: 27638006--27638108 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
27637996 TTGGTTTTCA
27638006 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
27638049 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
27638092 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
27638109 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:27638125 original size:29 final size:29
Alignment explanation
Indices: 27638090--27638163 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
27638080 GTTGTGAGAT
* *
27638090 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
27638119 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
27638148 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
27638164 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:27638595 original size:40 final size:40
Alignment explanation
Indices: 27638472--27638825 Score: 369
Period size: 40 Copynumber: 8.9 Consensus size: 40
27638462 TTCGAAGATG
** *
27638472 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
27638512 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
* *
27638552 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
27638592 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
27638632 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTA-TGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
27638671 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
27638711 TCCGGGCTAAGT-TCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * * *
27638750 TCCGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
27638790 TCCGGGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
27638826 CGTGTATTCG
Statistics
Matches: 268, Mismatches: 40, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
39 69 0.26
40 181 0.68
41 18 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:27638702 original size:79 final size:80
Alignment explanation
Indices: 27638472--27638825 Score: 387
Period size: 79 Copynumber: 4.5 Consensus size: 80
27638462 TTCGAAGATG
** * *
27638472 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAG-GC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATATCCGGGCTAAG-TCCCGAAGAGC
* * * **
27638533 ATTGGTGCGAGTTACTAAA
63 ATTCGTGCTAGTGA-TGTA
* *
27638552 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
*
27638617 CATGCTAGTGATGTA
66 CGTGCTAGTGATGTA
* *
27638632 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTA-TGATATATCCGGGCTAAGTCCCGAGGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
27638696 CGTGCTAGTGATGTA
66 CGTGCTAGTGATGTA
* * * ** *
27638711 TCCGGGCTAAGT-TCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCAAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
* * *
27638775 CGTGCTGGTGTTATA
66 CGTGCTAGTGATGTA
* * * *
27638790 TCCGGGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
27638826 CGTGTATTCG
Statistics
Matches: 235, Mismatches: 33, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
78 17 0.07
79 106 0.45
80 88 0.37
81 18 0.08
82 6 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
CGTGCTAGTGATGTA
Found at i:27640698 original size:22 final size:22
Alignment explanation
Indices: 27640673--27640738 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 22
27640663 GATTATCTTA
27640673 TGGCATGTATAAAATAGACTAG
1 TGGCATGTATAAAATAGACTAG
* * *
27640695 TGGC--GGA-AGAATA-TCTTA-
1 TGGCATGTATAAAATAGAC-TAG
27640713 TGGCATGTATAAAATAGACTAG
1 TGGCATGTATAAAATAGACTAG
27640735 TGGC
1 TGGC
27640739 GGAAGAATAT
Statistics
Matches: 32, Mismatches: 6, Indels: 12
0.64 0.12 0.24
Matches are distributed among these distances:
18 5 0.16
19 7 0.22
20 4 0.12
21 7 0.22
22 9 0.28
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.27
Consensus pattern (22 bp):
TGGCATGTATAAAATAGACTAG
Found at i:27640721 original size:40 final size:40
Alignment explanation
Indices: 27640666--27640748 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
27640656 CTATATGGAT
27640666 TATCTTATGGCATGTATAAAATAGACTAGTGGCGGAAGAA
1 TATCTTATGGCATGTATAAAATAGACTAGTGGCGGAAGAA
27640706 TATCTTATGGCATGTATAAAATAGACTAGTGGCGGAAGAA
1 TATCTTATGGCATGTATAAAATAGACTAGTGGCGGAAGAA
27640746 TAT
1 TAT
27640749 TTTGGTTAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (40 bp):
TATCTTATGGCATGTATAAAATAGACTAGTGGCGGAAGAA
Found at i:27642115 original size:43 final size:43
Alignment explanation
Indices: 27642067--27642169 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
27642057 TTGGTTTTCA
27642067 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
27642110 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
27642153 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
27642170 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:27642186 original size:29 final size:29
Alignment explanation
Indices: 27642151--27642224 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
27642141 GTTGTGAGAT
* *
27642151 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
27642180 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
27642209 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
27642225 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:27642704 original size:39 final size:40
Alignment explanation
Indices: 27642535--27642887 Score: 369
Period size: 40 Copynumber: 8.9 Consensus size: 40
27642525 TCGAAAGATG
** *
27642535 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
27642575 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
* *
27642615 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
27642655 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT-ATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
*
27642694 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
27642734 TCCGGGCTAAGTCCCGAGGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* *
27642774 TCCGGGCTAAGT-TCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * * * *
27642813 TCCGTGCTAA-ACCCAAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * * *
27642852 TCCGGGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
27642888 CGTGTATTCG
Statistics
Matches: 268, Mismatches: 38, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
39 103 0.38
40 147 0.55
41 18 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:27642713 original size:79 final size:80
Alignment explanation
Indices: 27642535--27642887 Score: 387
Period size: 79 Copynumber: 4.5 Consensus size: 80
27642525 TCGAAAGATG
** * *
27642535 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAG-GC
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATATCCGGGCTAAG-TCCCGAAGAGC
* * * **
27642596 ATTGGTGCGAGTTACTAAA
63 ATTCGTGCTAGTGA-TGTA
* *
27642615 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
*
27642680 CATGCTAGT-ATGTA
66 CGTGCTAGTGATGTA
* *
27642694 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAGGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
27642759 CGTGCTAGTGATGTA
66 CGTGCTAGTGATGTA
* * * * *
27642774 TCCGGGCTAAGT-TCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAA-ACCCAAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
* * *
27642837 CGTGCTGGTGTTATA
66 CGTGCTAGTGATGTA
* * * *
27642852 TCCGGGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
27642888 CGTGTATTCG
Statistics
Matches: 236, Mismatches: 31, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
78 34 0.14
79 124 0.53
80 55 0.23
81 17 0.07
82 6 0.03
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATT
CGTGCTAGTGATGTA
Found at i:27644763 original size:22 final size:22
Alignment explanation
Indices: 27644738--27644803 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 22
27644728 GATTATCTTA
27644738 TGGCATGTATAAAATAGACTAG
1 TGGCATGTATAAAATAGACTAG
* * *
27644760 TGGC--GGA-AGAATA-TCTTA-
1 TGGCATGTATAAAATAGAC-TAG
27644778 TGGCATGTATAAAATAGACTAG
1 TGGCATGTATAAAATAGACTAG
27644800 TGGC
1 TGGC
27644804 GGAAGAATAT
Statistics
Matches: 32, Mismatches: 6, Indels: 12
0.64 0.12 0.24
Matches are distributed among these distances:
18 5 0.16
19 7 0.22
20 4 0.12
21 7 0.22
22 9 0.28
ACGTcount: A:0.36, C:0.11, G:0.26, T:0.27
Consensus pattern (22 bp):
TGGCATGTATAAAATAGACTAG
Found at i:27644786 original size:40 final size:40
Alignment explanation
Indices: 27644731--27644813 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
27644721 CTATATGGAT
27644731 TATCTTATGGCATGTATAAAATAGACTAGTGGCGGAAGAA
1 TATCTTATGGCATGTATAAAATAGACTAGTGGCGGAAGAA
27644771 TATCTTATGGCATGTATAAAATAGACTAGTGGCGGAAGAA
1 TATCTTATGGCATGTATAAAATAGACTAGTGGCGGAAGAA
27644811 TAT
1 TAT
27644814 TTTGGTTAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (40 bp):
TATCTTATGGCATGTATAAAATAGACTAGTGGCGGAAGAA
Found at i:27646183 original size:43 final size:43
Alignment explanation
Indices: 27646135--27646237 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
27646125 TTGGTTTTCA
27646135 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
27646178 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
27646221 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
27646238 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:27646254 original size:29 final size:29
Alignment explanation
Indices: 27646219--27646292 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
27646209 GTTGTGAGAT
* *
27646219 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
27646248 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
27646277 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
27646293 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:27652372 original size:23 final size:22
Alignment explanation
Indices: 27652336--27652378 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
27652326 TAACATCCAT
* *
27652336 GCCAAAACATACCATAACATGA
1 GCCAAAACAAACCAAAACATGA
27652358 GCCATAAACAAACCAAAACAT
1 GCCA-AAACAAACCAAAACAT
27652379 ATGGTTTATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.53, C:0.28, G:0.07, T:0.12
Consensus pattern (22 bp):
GCCAAAACAAACCAAAACATGA
Found at i:27653163 original size:43 final size:42
Alignment explanation
Indices: 27653114--27653195 Score: 112
Period size: 42 Copynumber: 1.9 Consensus size: 42
27653104 TCTTACATGT
*
27653114 AATCAAATATCGATGAC-ACTGTCCCAGACAGGGTCTTACACAA
1 AATCAAATAT-GATG-CTAATGTCCCAGACAGGGTCTTACACAA
* *
27653157 AATCAAATATGATGCTAATGTCTCAGACATGGTCTTACA
1 AATCAAATATGATGCTAATGTCCCAGACAGGGTCTTACA
27653196 AGTAAATCAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
41 1 0.03
42 24 0.69
43 10 0.29
ACGTcount: A:0.37, C:0.22, G:0.16, T:0.26
Consensus pattern (42 bp):
AATCAAATATGATGCTAATGTCCCAGACAGGGTCTTACACAA
Found at i:27653203 original size:43 final size:42
Alignment explanation
Indices: 27653096--27653239 Score: 125
Period size: 43 Copynumber: 3.4 Consensus size: 42
27653086 CCAACATCTT
* * *
27653096 AGACGTGGTCTTACATGT-AATCAAATATCGATGACACTGTCCC
1 AGACATGGTCTTACAAGTAAATCAAATAT-GATG-CAATGTCCC
* *
27653139 AGACAGGGTCTTACACA--AAATCAAATATGATGCTAATGTCTC
1 AGACATGGTCTTACA-AGTAAATCAAATATGATGC-AATGTCCC
*
27653181 AGACATGGTCTTACAAGTAAATCATAAGT-TGATGCCAACGTCCC
1 AGACATGGTCTTACAAGTAAATCA-AA-TATGATG-CAATGTCCC
**
27653225 AGATGTGGTCTTACA
1 AGACATGGTCTTACA
27653240 CGATAACACA
Statistics
Matches: 83, Mismatches: 10, Indels: 15
0.77 0.09 0.14
Matches are distributed among these distances:
41 2 0.02
42 24 0.29
43 29 0.35
44 26 0.31
45 2 0.02
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (42 bp):
AGACATGGTCTTACAAGTAAATCAAATATGATGCAATGTCCC
Found at i:27656843 original size:48 final size:48
Alignment explanation
Indices: 27656791--27657023 Score: 184
Period size: 48 Copynumber: 4.9 Consensus size: 48
27656781 TTGGCCACAT
* * * * *
27656791 TATGTGAGCCAGTATAAGACCATGTTTAGGACATGGTATCGGTGTTGA
1 TATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGTATTGA
* * * * * **
27656839 TATGTGCGCTAGTGTAAGACCATGTCTAGGACATGGCGTCGGCCA-CAA
1 TATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGG-TATTGA
* *
27656887 TATGAGAGCCATTGTAAGACCATGT-TTGGATCATGGCATCGGTATTGA
1 TATGAGAGCCAGTGTAAGACCATGTCTAGGA-CATGGCATCGGTATTGA
* * * * * ** *
27656935 GATGAGAGCTAGTGTAAGGCCATGTCTGGGACATGGGATCGGCCTCGA
1 TATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGTATTGA
** * *
27656983 CGTGTA-AGCTAGTGTAAGACCATGTCTAGGACGTGGCATCG
1 TATG-AGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCG
27657024 ATAATTTACT
Statistics
Matches: 146, Mismatches: 34, Indels: 10
0.77 0.18 0.05
Matches are distributed among these distances:
47 5 0.03
48 136 0.93
49 5 0.03
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.26
Consensus pattern (48 bp):
TATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGGTATTGA
Found at i:27656905 original size:96 final size:95
Alignment explanation
Indices: 27656740--27656978 Score: 284
Period size: 96 Copynumber: 2.5 Consensus size: 95
27656730 GACATTTGAG
* * * * * *
27656740 TGATATGTGTGCTAGTGTAAGACCATGT-TTGGAACATGGAATTGGCCACATTATGTGAGCCAGT
1 TGATATGTGAGCTAGTGTAAGACCATGTCTAGG-ACATGG-GTCGGCCACAATATGAGAGCCAGT
* *
27656804 ATAAGACCATGTTTAGGA-CATGGTATCGGTGT
64 ATAAGACCATGTTT-GGATCATGGCATCGGTAT
* * *
27656836 TGATATGTGCGCTAGTGTAAGACCATGTCTAGGACATGGCGTCGGCCACAATATGAGAGCCATTG
1 TGATATGTGAGCTAGTGTAAGACCATGTCTAGGACATGG-GTCGGCCACAATATGAGAGCCAGTA
27656901 TAAGACCATGTTTGGATCATGGCATCGGTAT
65 TAAGACCATGTTTGGATCATGGCATCGGTAT
* * * *
27656932 TGAGATGAGAGCTAGTGTAAGGCCATGTCTGGGACATGGGATCGGCC
1 TGATATGTGAGCTAGTGTAAGACCATGTCTAGGACATGGG-TCGGCC
27656979 TCGACGTGTA
Statistics
Matches: 124, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
95 4 0.03
96 117 0.94
97 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (95 bp):
TGATATGTGAGCTAGTGTAAGACCATGTCTAGGACATGGGTCGGCCACAATATGAGAGCCAGTAT
AAGACCATGTTTGGATCATGGCATCGGTAT
Found at i:27656999 original size:96 final size:96
Alignment explanation
Indices: 27656750--27657023 Score: 277
Period size: 96 Copynumber: 2.9 Consensus size: 96
27656740 TGATATGTGT
* ** * ** * *
27656750 GCTAGTGTAAGACCATGT-TTGGAACATGGAATTGGCCACATTATGTGAGCCAGTATAAGACCAT
1 GCTAGTGTAAGACCATGTCTAGG-ACATGGCGTCGGCCACAACATGAGAGCCAGTGTAAGACCAT
* * * * *
27656814 GTTTAGGACATGGTATCGGTGTTGATATGTGC
65 GTTTAGGACATGGCATCGGTATTGAGATGAGA
* *
27656846 GCTAGTGTAAGACCATGTCTAGGACATGGCGTCGGCCACAATATGAGAGCCATTGTAAGACCATG
1 GCTAGTGTAAGACCATGTCTAGGACATGGCGTCGGCCACAACATGAGAGCCAGTGTAAGACCATG
27656911 TTT-GGATCATGGCATCGGTATTGAGATGAGA
66 TTTAGGA-CATGGCATCGGTATTGAGATGAGA
* * * * * *
27656942 GCTAGTGTAAGGCCATGTCTGGGACATGG-GATCGGCCTCGACGTGTA-AGCTAGTGTAAGACCA
1 GCTAGTGTAAGACCATGTCTAGGACATGGCG-TCGGCCACAACATG-AGAGCCAGTGTAAGACCA
* *
27657005 TGTCTAGGACGTGGCATCG
64 TGTTTAGGACATGGCATCG
27657024 ATAATTTACT
Statistics
Matches: 150, Mismatches: 23, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
95 4 0.03
96 139 0.93
97 7 0.05
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (96 bp):
GCTAGTGTAAGACCATGTCTAGGACATGGCGTCGGCCACAACATGAGAGCCAGTGTAAGACCATG
TTTAGGACATGGCATCGGTATTGAGATGAGA
Found at i:27659803 original size:13 final size:13
Alignment explanation
Indices: 27659785--27659809 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27659775 CACAAATGAT
27659785 AAAATTTTCACAC
1 AAAATTTTCACAC
27659798 AAAATTTTCACA
1 AAAATTTTCACA
27659810 GATATAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.32
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:27661896 original size:48 final size:48
Alignment explanation
Indices: 27661835--27662061 Score: 208
Period size: 48 Copynumber: 4.7 Consensus size: 48
27661825 GATATGTGCA
*
27661835 CCAGTGTAAGACCATGTCTGGGACATGGCGTCGACCACGATATGAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGATATGAGAG
* * * ** *
27661883 CCAGTGTAAGACCATGTTTGGAACATGGCATC-AGCAATATTGTGAGAG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGA-TATGAGAG
* * * * *
27661931 CCAGTGTAAGACCATGTCTAGGACATGGCATCG-GCATTGATATGTGTG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCA-CGATATGAGAG
** * * * * *
27661979 GTAGTGTAAGACCATGTCTGGGACATAGCATTGGCCTCGACATGTA-AG
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGATATG-AGAG
* * *
27662027 CCAGTGTAAGACCATGTCTAGAACGTGGCATCGAC
1 CCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
27662062 AATTTACTCT
Statistics
Matches: 140, Mismatches: 34, Indels: 10
0.76 0.18 0.05
Matches are distributed among these distances:
47 4 0.03
48 134 0.96
49 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
CCAGTGTAAGACCATGTCTGGGACATGGCATCGACCACGATATGAGAG
Found at i:27664919 original size:11 final size:11
Alignment explanation
Indices: 27664899--27664935 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
27664889 CTCCTTCCTC
*
27664899 AACTCAACTCG
1 AACTCGACTCG
27664910 AACTCGACTCG
1 AACTCGACTCG
27664921 AACTCGACTC-
1 AACTCGACTCG
27664931 AACTC
1 AACTC
27664936 AGTCCCACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
10 5 0.20
11 20 0.80
ACGTcount: A:0.32, C:0.38, G:0.11, T:0.19
Consensus pattern (11 bp):
AACTCGACTCG
Found at i:27665932 original size:33 final size:33
Alignment explanation
Indices: 27665890--27665963 Score: 139
Period size: 33 Copynumber: 2.2 Consensus size: 33
27665880 TTCTTTCATG
27665890 TTAGTTTGAACCATCATCCATAATTATATTGAA
1 TTAGTTTGAACCATCATCCATAATTATATTGAA
27665923 TTAGTTTGAACCATCATCCATAATTATATTGAA
1 TTAGTTTGAACCATCATCCATAATTATATTGAA
27665956 TTAAGTTT
1 TT-AGTTT
27665964 TGCATCAATT
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
33 35 0.88
34 5 0.12
ACGTcount: A:0.35, C:0.14, G:0.09, T:0.42
Consensus pattern (33 bp):
TTAGTTTGAACCATCATCCATAATTATATTGAA
Found at i:27666117 original size:108 final size:108
Alignment explanation
Indices: 27665922--27666192 Score: 380
Period size: 108 Copynumber: 2.5 Consensus size: 108
27665912 ATTATATTGA
* * * *
27665922 ATTAGTTTGAACCATCATCCATAATTATATTGAATTAAGTTTTGCATCAATTTTGTTTTCCAAAT
1 ATTAGTTTGAACCATCATCCTTAATTATATTGAATTAAGTTTTGCATCAATGTTGCTTGCCAAAT
* * * * *
27665987 GCTAGGGCAAGCTGAGCCAATAACTCTTGAAACTTTCGTTCTT
66 ACTAGAGCAAGCTGAGCAAATAACTCTTGAAACTTTCATTCGT
*
27666030 ATTAGTTTGAACCGTCATCCTTAATTATATTGAATTAAGTTTTGCATCAATGTTGCTTGCCAAAT
1 ATTAGTTTGAACCATCATCCTTAATTATATTGAATTAAGTTTTGCATCAATGTTGCTTGCCAAAT
* * * *
27666095 ACTAGAGCTAGCTGGGCAAATAACTTTTGAATCTTTCATTCGT
66 ACTAGAGCAAGCTGAGCAAATAACTCTTGAAACTTTCATTCGT
* * * *
27666138 GTTAGTTTGAACCATCCTCCTTAATTACATTGAGTTAAGTTTTGCATCAATGTTG
1 ATTAGTTTGAACCATCATCCTTAATTATATTGAATTAAGTTTTGCATCAATGTTG
27666193 TTAATAAGTT
Statistics
Matches: 144, Mismatches: 19, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
108 144 1.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.39
Consensus pattern (108 bp):
ATTAGTTTGAACCATCATCCTTAATTATATTGAATTAAGTTTTGCATCAATGTTGCTTGCCAAAT
ACTAGAGCAAGCTGAGCAAATAACTCTTGAAACTTTCATTCGT
Found at i:27670790 original size:20 final size:21
Alignment explanation
Indices: 27670765--27670807 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
27670755 AAAGTAGCAT
* *
27670765 TAAGAACTGGAGTGC-AATAA
1 TAAGAACTGAAGTACGAATAA
27670785 TAAGAACTGAAGTACGAATAA
1 TAAGAACTGAAGTACGAATAA
27670806 TA
1 TA
27670808 GTAAGCATCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.49, C:0.09, G:0.21, T:0.21
Consensus pattern (21 bp):
TAAGAACTGAAGTACGAATAA
Found at i:27678557 original size:39 final size:39
Alignment explanation
Indices: 27678416--27678600 Score: 201
Period size: 40 Copynumber: 4.7 Consensus size: 39
27678406 TCGGATGATA
* * **
27678416 ACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT
1 ACCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACT-AT
* * * *
27678456 TCCGGGCTAAGTCCCGAAGGCATTCGTACGAGCTACTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
* * *
27678495 ATCTGGGCTAAGTCCCGAGGGCATTTGTGCGAGTTATTAT
1 A-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
* * *
27678535 ACCGGGCTAATTCCCGAAGGCATTTATGCAAGTTACTAT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
27678574 AACCGGGCTAAGTCCCGAAGGCATTTG
1 -ACCGGGCTAAGTCCCGAAGGCATTTG
27678601 AGCTAGTGGC
Statistics
Matches: 119, Mismatches: 23, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
39 34 0.29
40 83 0.70
41 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT
Found at i:27678614 original size:40 final size:40
Alignment explanation
Indices: 27678413--27678623 Score: 184
Period size: 40 Copynumber: 5.3 Consensus size: 40
27678403 TGTTCGGATG
* *
27678413 ATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGAGCGAGTGACT
* *
27678453 A-ATTCCGGGCTAAGTCCCGAAGGCATTCGTA-CGAGCT-ACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTG-AGCGAG-TGACT
* * * * * *
27678493 ATATCTGGGCTAAGTCCCGAGGGCATTTGTGCGAGTTATT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGACT
* * *
27678533 AT-ACCGGGCTAATTCCCGAAGGCATTT-ATGCAAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGA-GCGAGTGACT
* *
27678572 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGACT
*
27678612 ATATCC-GGCTAA
1 ATAACCGGGCTAA
27678624 ACTCCGAAGG
Statistics
Matches: 140, Mismatches: 21, Indels: 21
0.77 0.12 0.12
Matches are distributed among these distances:
39 39 0.28
40 95 0.68
41 6 0.04
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAGTGACT
Found at i:27678622 original size:79 final size:80
Alignment explanation
Indices: 27678413--27678623 Score: 250
Period size: 79 Copynumber: 2.7 Consensus size: 80
27678403 TGTTCGGATG
27678413 ATAACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTA-ATTCCGGGCTAAGTCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAG-GCATTTGAGCTAGTGGCTATA-TCCGGGCTAAGTCCCGAAGG
* *
27678476 CATTCGTACGAGCTACT
64 CATTCATACAAGCTACT
* * * * * *** *
27678493 ATATCTGGGCTAAGTCCCGAGGGCATTTGTGCGAGTTATTATA-CCGGGCTAATTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAAGTCCCGAAGGCA
* * *
27678557 TTTATGCAAGTTACT
66 TTCATACAAGCTACT
27678572 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAA
27678624 ACTCCGAAGG
Statistics
Matches: 106, Mismatches: 22, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
79 71 0.67
80 33 0.31
81 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.26
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCCGGGCTAAGTCCCGAAGGCA
TTCATACAAGCTACT
Found at i:27682450 original size:83 final size:83
Alignment explanation
Indices: 27682311--27682475 Score: 294
Period size: 83 Copynumber: 2.0 Consensus size: 83
27682301 TTTAAATAGG
27682311 TTATGTTGCATGCTATGAAACATGTTTGAGTAAATGAGTGTTTGAGGGTGGCAATTGGCTTGGAA
1 TTATGTTGCATGCTATGAAACATGTTTGAGTAAATGAGTGTTTGAGGGTGGCAATTGGCTTGGAA
*
27682376 ACTATCCTCTAAAATGTC
66 ACTAGCCTCTAAAATGTC
*
27682394 TTATGTTGCATGCTATGAAACATGTTTGATTAAATGAGTGTTTGAGGGTGGCAATTGGCTTGGAA
1 TTATGTTGCATGCTATGAAACATGTTTGAGTAAATGAGTGTTTGAGGGTGGCAATTGGCTTGGAA
* *
27682459 ATTGGCCTCTAAAATGT
66 ACTAGCCTCTAAAATGT
27682476 TCATACGAGC
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
83 78 1.00
ACGTcount: A:0.27, C:0.11, G:0.26, T:0.36
Consensus pattern (83 bp):
TTATGTTGCATGCTATGAAACATGTTTGAGTAAATGAGTGTTTGAGGGTGGCAATTGGCTTGGAA
ACTAGCCTCTAAAATGTC
Found at i:27685830 original size:53 final size:53
Alignment explanation
Indices: 27685652--27685858 Score: 189
Period size: 53 Copynumber: 3.8 Consensus size: 53
27685642 ATTAGGGTTT
* * * * *
27685652 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * * * * *
27685706 AAGGAAATCATGTAAGACCATGTCTAGACATGACATTGATAAACTACGGTAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * * * *
27685761 AAAGATCCCATGTAAGACCATGCCAAGGCATAGCAATGGTGAGTTCATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* *
27685814 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
27685859 TAAAAAGGAA
Statistics
Matches: 116, Mismatches: 35, Indels: 5
0.74 0.22 0.03
Matches are distributed among these distances:
53 44 0.38
54 36 0.31
55 36 0.31
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.20
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:27689611 original size:43 final size:43
Alignment explanation
Indices: 27689563--27689655 Score: 143
Period size: 43 Copynumber: 2.2 Consensus size: 43
27689553 ATTCTAGAAA
*
27689563 TATTTT-TATTTTATCTTTTAGTAGTTTACTAGAATATGGGAAC
1 TATTTTCT-TTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
* *
27689606 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAAC
1 TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
27689649 TATTTTC
1 TATTTTC
27689656 CCAATTAGGA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 45 0.98
44 1 0.02
ACGTcount: A:0.27, C:0.06, G:0.14, T:0.53
Consensus pattern (43 bp):
TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
Found at i:27690801 original size:15 final size:15
Alignment explanation
Indices: 27690781--27690810 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
27690771 GTCTCCATTC
27690781 ACTAAGGAACAATTA
1 ACTAAGGAACAATTA
27690796 ACTAAGGAACAATTA
1 ACTAAGGAACAATTA
27690811 GAGCATTTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.13, G:0.13, T:0.20
Consensus pattern (15 bp):
ACTAAGGAACAATTA
Found at i:27694362 original size:43 final size:43
Alignment explanation
Indices: 27694314--27694406 Score: 152
Period size: 43 Copynumber: 2.2 Consensus size: 43
27694304 ATTCTAGAAA
27694314 TATTTT-TATTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
1 TATTTTCT-TTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
* *
27694357 TATTTTCTTTTTATGTTTTAGTAGTTTATTAGAATAAGGGAAC
1 TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
27694400 TATTTTC
1 TATTTTC
27694407 CCAATTAGGA
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
43 46 0.98
44 1 0.02
ACGTcount: A:0.28, C:0.06, G:0.14, T:0.52
Consensus pattern (43 bp):
TATTTTCTTTTTATCTTTTAGTAGTTTACTAGAATAAGGGAAC
Found at i:27695677 original size:19 final size:18
Alignment explanation
Indices: 27695653--27695695 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
27695643 GAAAAAACCC
*
27695653 TTTAAACTACTTTACTTTA
1 TTTAAACTAATTTA-TTTA
*
27695672 TTTAAAGTAATTTATTTA
1 TTTAAACTAATTTATTTA
*
27695690 ATTAAA
1 TTTAAA
27695696 TAAACCCCTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 9 0.43
19 12 0.57
ACGTcount: A:0.40, C:0.07, G:0.02, T:0.51
Consensus pattern (18 bp):
TTTAAACTAATTTATTTA
Found at i:27706314 original size:16 final size:16
Alignment explanation
Indices: 27706273--27706317 Score: 54
Period size: 17 Copynumber: 2.8 Consensus size: 16
27706263 GTAAATTCTA
* *
27706273 AAATCCCCAACTTGTC
1 AAATCCCCAAATAGTC
*
27706289 AAATTCCCCAAATAGTG
1 AAA-TCCCCAAATAGTC
27706306 AAATCCCCAAAT
1 AAATCCCCAAAT
27706318 CTAAAACCTC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 12 0.48
17 13 0.52
ACGTcount: A:0.40, C:0.31, G:0.07, T:0.22
Consensus pattern (16 bp):
AAATCCCCAAATAGTC
Found at i:27706371 original size:16 final size:16
Alignment explanation
Indices: 27706350--27706391 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
27706340 TGAATCCTTA
27706350 AAATCTTAAAATCCCT
1 AAATCTTAAAATCCCT
* *
27706366 AAATCTTGAAATCCTT
1 AAATCTTAAAATCCCT
27706382 AAATCATTAA
1 AAATC-TTAA
27706392 CATTCCGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 19 0.86
17 3 0.14
ACGTcount: A:0.45, C:0.19, G:0.02, T:0.33
Consensus pattern (16 bp):
AAATCTTAAAATCCCT
Found at i:27706853 original size:116 final size:116
Alignment explanation
Indices: 27706575--27706897 Score: 479
Period size: 116 Copynumber: 2.8 Consensus size: 116
27706565 GTTTTGTTGA
*
27706575 TTATTTTTGATTTATTATTGCAATTTTAGTGCCACAATGTAGGGTTTGTTTTGTCGATTTGTGAT
1 TTATTTGTGATTTATTATTGCAATTTTAGTGCCACAATGTAGGGTTTGTTTTGTCGATTTGTGAT
* * *
27706640 GCAACAGTGGTCTCGGTGTTGTTGATAAAATTGTTGTTAAAATTGTAGATAG
66 GCGACAGTGGTC-CGATGTTGTTGATAAAATTGTTATTAAAATTGTAGATAG
*
27706692 TTATTTGTGATTTATTATTGCAATTTTAGTGCCACAATGTAGGGTTTGTTTTGTCAATTTGTGAT
1 TTATTTGTGATTTATTATTGCAATTTTAGTGCCACAATGTAGGGTTTGTTTTGTCGATTTGTGAT
* * * *
27706757 ACGACAATGGTCCGATGTTATTGAT-AAATCTGTTATTAAAATTGTAGATGG
66 GCGACAGTGGTCCGATGTTGTTGATAAAAT-TGTTATTAAAATTGTAGATAG
* * * * *
27706808 TTATTTGTGATTTATTTTTACAATTTCAATGCCACAATGTAGGGTTTATTTT-TCGATTTGTGAT
1 TTATTTGTGATTTATTATTGCAATTTTAGTGCCACAATGTAGGGTTTGTTTTGTCGATTTGTGAT
27706872 GCGACAGTGGTCCCGATGTTGTTGAT
66 GCGACAGTGGT-CCGATGTTGTTGAT
27706898 TTCTGTTACC
Statistics
Matches: 186, Mismatches: 18, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
115 24 0.13
116 90 0.48
117 72 0.39
ACGTcount: A:0.24, C:0.09, G:0.22, T:0.45
Consensus pattern (116 bp):
TTATTTGTGATTTATTATTGCAATTTTAGTGCCACAATGTAGGGTTTGTTTTGTCGATTTGTGAT
GCGACAGTGGTCCGATGTTGTTGATAAAATTGTTATTAAAATTGTAGATAG
Found at i:27707432 original size:33 final size:33
Alignment explanation
Indices: 27707395--27707463 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
27707385 TGTTGACTAC
* *
27707395 TGGGGAGGGTGATGTTGATGGGGTAGAAGT-TGA
1 TGGGGAGGGTGATGATGAAGGGGTAGAA-TCTGA
27707428 TGGGGAGGGTGATGATGAAGGGGTAGAATCTGA
1 TGGGGAGGGTGATGATGAAGGGGTAGAATCTGA
27707461 TGG
1 TGG
27707464 TGAAAGTGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 1 0.03
33 32 0.97
ACGTcount: A:0.23, C:0.01, G:0.51, T:0.25
Consensus pattern (33 bp):
TGGGGAGGGTGATGATGAAGGGGTAGAATCTGA
Found at i:27707473 original size:33 final size:33
Alignment explanation
Indices: 27707403--27707491 Score: 83
Period size: 33 Copynumber: 2.7 Consensus size: 33
27707393 ACTGGGGAGG
* * **
27707403 GTGATGTTGATGGGGTAGAAGT-TGATGGGGAGG
1 GTGATGATGAAGGGGTAGAA-TCTGATGGGGAAA
*
27707436 GTGATGATGAAGGGGTAGAATCTGATGGTGAAA
1 GTGATGATGAAGGGGTAGAATCTGATGGGGAAA
* *
27707469 GTGAT-CTAGAAAGGGTAGAATCT
1 GTGATGAT-GAAGGGGTAGAATCT
27707492 ATTGAAGAAG
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
32 2 0.04
33 45 0.96
ACGTcount: A:0.29, C:0.03, G:0.42, T:0.26
Consensus pattern (33 bp):
GTGATGATGAAGGGGTAGAATCTGATGGGGAAA
Found at i:27707518 original size:33 final size:34
Alignment explanation
Indices: 27707445--27707527 Score: 82
Period size: 33 Copynumber: 2.5 Consensus size: 34
27707435 GGTGATGATG
** *
27707445 AAGGGGTAGAATCTGATGGTGAAAGTGATCTAGA
1 AAGGGGTAGAATCTGATGAAGAAAGTGATATAGA
*
27707479 AA-GGGTAGAATCT-ATTGAAGAAGGTGATATA-A
1 AAGGGGTAGAATCTGA-TGAAGAAAGTGATATAGA
* *
27707511 AAGGGGTACAAGCTGAT
1 AAGGGGTAGAATCTGAT
27707528 ACAGAGGGTG
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
32 4 0.10
33 33 0.82
34 3 0.08
ACGTcount: A:0.39, C:0.06, G:0.33, T:0.23
Consensus pattern (34 bp):
AAGGGGTAGAATCTGATGAAGAAAGTGATATAGA
Found at i:27714753 original size:29 final size:29
Alignment explanation
Indices: 27714714--27714792 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
27714704 CTTAATAATC
*
27714714 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
27714744 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
27714773 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
27714793 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:27733343 original size:51 final size:52
Alignment explanation
Indices: 27733213--27733355 Score: 143
Period size: 51 Copynumber: 2.8 Consensus size: 52
27733203 TGGATGCCCG
* * * * *
27733213 GTGGCCTGCACATAATACCACCCTTGT-AGTC-AAAGCTACCTTCTTCACAAA
1 GTGGCCTACACATAGTACCACACATGTGA-TCGAAAGCTATCTTCTTCACAAA
* ** *
27733264 GTGGCCTTCACATAGTACCACAGTTGTGA-CGAAAGCTATCTT-TTACACATA
1 GTGGCCTACACATAGTACCACACATGTGATCGAAAGCTATCTTCTT-CACAAA
*
27733315 GTGGCCTACACTTAGTACCACACATGTGATCG-AAGCTATCT
1 GTGGCCTACACATAGTACCACACATGTGATCGAAAGCTATCT
27733356 GTAACAACCC
Statistics
Matches: 78, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
50 3 0.04
51 72 0.92
52 3 0.04
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (52 bp):
GTGGCCTACACATAGTACCACACATGTGATCGAAAGCTATCTTCTTCACAAA
Found at i:27738243 original size:5 final size:5
Alignment explanation
Indices: 27738233--27738262 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
27738223 TATTGGGGTT
27738233 GACAG GACAG GACAG GACAG GACAG GACAG
1 GACAG GACAG GACAG GACAG GACAG GACAG
27738263 AAATGAGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.40, C:0.20, G:0.40, T:0.00
Consensus pattern (5 bp):
GACAG
Found at i:27738324 original size:46 final size:48
Alignment explanation
Indices: 27738264--27738377 Score: 144
Period size: 48 Copynumber: 2.4 Consensus size: 48
27738254 ACAGGACAGA
*
27738264 AATGAGCCATGTAAGTCCAT-ATCA-A-ATATATGGCTTTGGAGAAAGG
1 AATGAGCCATGTAAGTCCATAAT-ATATATATATGGCATTGGAGAAAGG
* *
27738310 AATGAGCCATGTAAGCCCATAATATATATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGTCCATAATATATATATATGGCATTGGAGAAAGG
* **
27738358 AATAATTCATGTAAGTCCAT
1 AATGAGCCATGTAAGTCCAT
27738378 GTCGAAGACA
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
46 20 0.34
47 3 0.05
48 35 0.60
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (48 bp):
AATGAGCCATGTAAGTCCATAATATATATATATGGCATTGGAGAAAGG
Found at i:27738360 original size:48 final size:46
Alignment explanation
Indices: 27738258--27738360 Score: 136
Period size: 46 Copynumber: 2.2 Consensus size: 46
27738248 GACAGGACAG
* * *
27738258 GACAGAAATGAGCCATGTAAGTCCATATCAAATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATATCAAATATATGGCATTGGA
*
27738304 GAAAGGAATGAGCCATGTAAGCCCATAAT-ATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCAT-ATCA-A-ATATATGGCATTGGA
27738352 GACAGGAAT
1 GACAGGAAT
27738361 AATTCATGTA
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
46 24 0.49
47 3 0.06
48 22 0.45
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.24
Consensus pattern (46 bp):
GACAGGAATGAGCCATGTAAGCCCATATCAAATATATGGCATTGGA
Found at i:27740177 original size:48 final size:48
Alignment explanation
Indices: 27740107--27740320 Score: 216
Period size: 48 Copynumber: 4.5 Consensus size: 48
27740097 ACAGCCCAAC
* * * * *
27740107 TATGGTCTTACAC-GAAGTCTCATAACGGTGCCGATGTCATGTCCCAGA
1 TATGGTCTTATACGGGA-TCTCATAACGATGCCGATGCCATATCCCAGA
* * * * *
27740155 CATGGTCTTATACGGGACCTCATATCGATGCCAATGCCATATCCCATA
1 TATGGTCTTATACGGGATCTCATAACGATGCCGATGCCATATCCCAGA
* * *
27740203 AATGGTCTTACATGGGATCTCAT-ACTGATGCCGATGCCATATCCCAGA
1 TATGGTCTTATACGGGATCTCATAAC-GATGCCGATGCCATATCCCAGA
* * *** * *
27740251 TATGGGCTTATACGAGATCTCATTTTGATGCCGATGTCATATCCTAGA
1 TATGGTCTTATACGGGATCTCATAACGATGCCGATGCCATATCCCAGA
27740299 TATGGTCTTATACGGGATCTCA
1 TATGGTCTTATACGGGATCTCA
27740321 ATACTCACAT
Statistics
Matches: 135, Mismatches: 28, Indels: 6
0.80 0.17 0.04
Matches are distributed among these distances:
47 1 0.01
48 132 0.98
49 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.30
Consensus pattern (48 bp):
TATGGTCTTATACGGGATCTCATAACGATGCCGATGCCATATCCCAGA
Found at i:27740248 original size:96 final size:97
Alignment explanation
Indices: 27740135--27740325 Score: 240
Period size: 96 Copynumber: 2.0 Consensus size: 97
27740125 CTCATAACGG
* * * *
27740135 TGCCGATGTCATGTCCCAGACATGGTCTTATACGGGACCTCATATCGATGCCAATGCCATATCCC
1 TGCCGATGCCATATCCCAGACATGGGCTTATACGAGACCTCATATCGATGCCAATGCCATATCCC
* *
27740200 ATAAATGGTCTTACATGGGATCTC-ATACTGA
66 AGAAATGGTCTTACACGGGATCTCAATACTGA
* * * * * * *
27740231 TGCCGATGCCATATCCCAGATATGGGCTTATACGAGATCTCATTTTGATGCCGATGTCATATCCT
1 TGCCGATGCCATATCCCAGACATGGGCTTATACGAGACCTCATATCGATGCCAATGCCATATCCC
* *
27740296 AGATATGGTCTTATACGGGATCTCAATACT
66 AGAAATGGTCTTACACGGGATCTCAATACT
27740326 CACATGTTGT
Statistics
Matches: 79, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
96 74 0.94
97 5 0.06
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (97 bp):
TGCCGATGCCATATCCCAGACATGGGCTTATACGAGACCTCATATCGATGCCAATGCCATATCCC
AGAAATGGTCTTACACGGGATCTCAATACTGA
Found at i:27740451 original size:6 final size:6
Alignment explanation
Indices: 27740440--27740643 Score: 390
Period size: 6 Copynumber: 34.0 Consensus size: 6
27740430 ATAAAGACAA
*
27740440 ATACAT ATACAT AGACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
*
27740488 ATACAT ATACAT AGACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
27740536 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
27740584 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
1 ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT ATACAT
27740632 ATACAT ATACAT
1 ATACAT ATACAT
27740644 TTCATGCAAT
Statistics
Matches: 194, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 194 1.00
ACGTcount: A:0.50, C:0.17, G:0.01, T:0.32
Consensus pattern (6 bp):
ATACAT
Found at i:27741411 original size:50 final size:50
Alignment explanation
Indices: 27741336--27741444 Score: 209
Period size: 50 Copynumber: 2.2 Consensus size: 50
27741326 CTTGAATATG
27741336 GACAAAAATTGGCTTTTAATTTTGTTTTTAATTCATTTTAATTACTAAAT
1 GACAAAAATTGGCTTTTAATTTTGTTTTTAATTCATTTTAATTACTAAAT
27741386 GACAAAAATTGGCTTTTAATTTTGTTTTTAATTCATTTTAATTACTAAAT
1 GACAAAAATTGGCTTTTAATTTTGTTTTTAATTCATTTTAATTACTAAAT
*
27741436 GACCAAAAT
1 GACAAAAAT
27741445 GCCCCTAACT
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 58 1.00
ACGTcount: A:0.36, C:0.09, G:0.08, T:0.47
Consensus pattern (50 bp):
GACAAAAATTGGCTTTTAATTTTGTTTTTAATTCATTTTAATTACTAAAT
Found at i:27741657 original size:13 final size:13
Alignment explanation
Indices: 27741639--27741677 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
27741629 GCCCAAACGT
27741639 CAAAATTTTCAAA
1 CAAAATTTTCAAA
27741652 CAAAATTTTCAAA
1 CAAAATTTTCAAA
27741665 CAAAATTTTCAAA
1 CAAAATTTTCAAA
27741678 AAATCATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
CAAAATTTTCAAA
Found at i:27745504 original size:15 final size:15
Alignment explanation
Indices: 27745466--27745505 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
27745456 TACGAGATGA
*
27745466 TACAGGTACGTATGG
1 TACAGGTACATATGG
* *
27745481 TAAACGTACATATGG
1 TACAGGTACATATGG
27745496 TACAGGTACA
1 TACAGGTACA
27745506 AGTCAGTATA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.35, C:0.15, G:0.25, T:0.25
Consensus pattern (15 bp):
TACAGGTACATATGG
Found at i:27751860 original size:93 final size:93
Alignment explanation
Indices: 27751701--27751965 Score: 494
Period size: 93 Copynumber: 2.8 Consensus size: 93
27751691 CGCCCATAAG
* * * *
27751701 CGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
27751766 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
27751794 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
27751859 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
27751887 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
27751952 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
27751966 TCAACCATCC
Statistics
Matches: 168, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 168 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:27751962 original size:46 final size:46
Alignment explanation
Indices: 27751694--27751962 Score: 293
Period size: 46 Copynumber: 5.8 Consensus size: 46
27751684 TGTAACCCGC
* * * *
27751694 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
27751740 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
27751790 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
27751833 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
27751883 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
27751926 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
27751963 TGCTCAACCA
Statistics
Matches: 188, Mismatches: 17, Indels: 36
0.78 0.07 0.15
Matches are distributed among these distances:
42 4 0.02
43 8 0.04
44 4 0.02
45 4 0.02
46 91 0.48
47 58 0.31
48 4 0.02
49 4 0.02
50 7 0.04
51 4 0.02
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:27751981 original size:46 final size:45
Alignment explanation
Indices: 27751745--27751974 Score: 197
Period size: 47 Copynumber: 5.0 Consensus size: 45
27751735 CGCATCCATA
27751745 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCTC
* * * *
27751793 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--TA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTC
27751838 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCTC
* * * *
27751886 A-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--TA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGC-CAACCATCTC
27751931 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCATC
27751975 CTAGTGACAT
Statistics
Matches: 148, Mismatches: 16, Indels: 38
0.73 0.08 0.19
Matches are distributed among these distances:
43 1 0.01
44 12 0.08
45 4 0.03
46 58 0.39
47 60 0.41
48 3 0.02
49 8 0.05
50 2 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCTC
Found at i:27752418 original size:30 final size:30
Alignment explanation
Indices: 27752384--27752443 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
27752374 ATTTAATACG
27752384 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
27752414 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
27752444 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:27759393 original size:20 final size:20
Alignment explanation
Indices: 27759368--27759430 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 20
27759358 CACATACGTG
27759368 CCCTTGTTTGTACTTTGGTA
1 CCCTTGTTTGTACTTTGGTA
* * * **
27759388 CCCTTGATTGCACATACGTA
1 CCCTTGTTTGTACTTTGGTA
* *
27759408 CCCTTATTTGTACTTTGGGA
1 CCCTTGTTTGTACTTTGGTA
27759428 CCC
1 CCC
27759431 CTAATTGCAC
Statistics
Matches: 31, Mismatches: 12, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.16, C:0.27, G:0.17, T:0.40
Consensus pattern (20 bp):
CCCTTGTTTGTACTTTGGTA
Found at i:27759492 original size:40 final size:40
Alignment explanation
Indices: 27759349--27759496 Score: 172
Period size: 40 Copynumber: 3.7 Consensus size: 40
27759339 GTTAATTATA
*
27759349 CCTGAATTGCACATACGTGCCCTTGTTTGTACTTTGGTACC
1 CCTG-ATTGCACATACGTGCCCCTGTTTGTACTTTGGTACC
* * * * *
27759390 CTTGATTGCACATACGTACCCTTATTTGTACTTTGGGACC
1 CCTGATTGCACATACGTGCCCCTGTTTGTACTTTGGTACC
* ** *
27759430 CCTAATTGCACATACGCT-CCCCTGTTTGTACTCCGATACC
1 CCTGATTGCACATACG-TGCCCCTGTTTGTACTTTGGTACC
*
27759470 CCTGATTGCACATACATGCCCCTGTTT
1 CCTGATTGCACATACGTGCCCCTGTTT
27759497 TCACTTCAGT
Statistics
Matches: 91, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
39 1 0.01
40 86 0.95
41 4 0.04
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.34
Consensus pattern (40 bp):
CCTGATTGCACATACGTGCCCCTGTTTGTACTTTGGTACC
Found at i:27762769 original size:38 final size:38
Alignment explanation
Indices: 27762671--27762773 Score: 125
Period size: 38 Copynumber: 2.7 Consensus size: 38
27762661 GGCTTAAAGA
** * *
27762671 CCCGCAGGCTTCGTGCTGGTAAAATATCCGAGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCAGAGATAAAT
* *
27762709 CCCGCAGGCTTCGTGCTAGTATTATATCAGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCAGAGATAAAT
* * *
27762747 TCCGCAGGCCTAGTGCTGGTATTATAT
1 CCCGCAGGCTTCGTGCTGGTATTATAT
27762774 TCGGGCCTTC
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 55 1.00
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.29
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCAGAGATAAAT
Found at i:27762824 original size:43 final size:43
Alignment explanation
Indices: 27762771--27762917 Score: 276
Period size: 43 Copynumber: 3.4 Consensus size: 43
27762761 GCTGGTATTA
*
27762771 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
27762814 TATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
27762857 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
27762900 TATTCGGGCCTTCGTGCC
1 TATTCGGGCCTTCGTGCC
27762918 GGTGATGTAT
Statistics
Matches: 101, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 101 1.00
ACGTcount: A:0.10, C:0.27, G:0.33, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:27762920 original size:27 final size:27
Alignment explanation
Indices: 27762878--27762944 Score: 109
Period size: 27 Copynumber: 2.5 Consensus size: 27
27762868 TCGTGCCTAG
*
27762878 CAGG-CTTCGTGCCGGTGATGTGTATT
1 CAGGCCTTCGTGCCGGTGATGTATATT
*
27762904 CGGGCCTTCGTGCCGGTGATGTATATT
1 CAGGCCTTCGTGCCGGTGATGTATATT
27762931 CAGGCCTTCGTGCC
1 CAGGCCTTCGTGCC
27762945 TAGCAGGCTT
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
26 3 0.08
27 34 0.92
ACGTcount: A:0.10, C:0.25, G:0.33, T:0.31
Consensus pattern (27 bp):
CAGGCCTTCGTGCCGGTGATGTATATT
Found at i:27762923 original size:70 final size:70
Alignment explanation
Indices: 27762839--27762987 Score: 253
Period size: 70 Copynumber: 2.1 Consensus size: 70
27762829 GCCTAGCAGG
* * * *
27762839 CTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATT
1 CTTCGTGCCGGTGATGTATATTCAGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTGCATT
27762904 CGGGC
66 CGGGC
*
27762909 CTTCGTGCCGGTGATGTATATTCAGGCCTTCGTGCCTAGCAGGCTTCATGTCGGTGATGTGCATT
1 CTTCGTGCCGGTGATGTATATTCAGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTGCATT
27762974 CGGGC
66 CGGGC
27762979 CTTCGTGCC
1 CTTCGTGCC
27762988 TAGCAGGCTT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 74 1.00
ACGTcount: A:0.10, C:0.26, G:0.33, T:0.32
Consensus pattern (70 bp):
CTTCGTGCCGGTGATGTATATTCAGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTGCATT
CGGGC
Found at i:27762951 original size:156 final size:156
Alignment explanation
Indices: 27762769--27763073 Score: 520
Period size: 156 Copynumber: 2.0 Consensus size: 156
27762759 GTGCTGGTAT
* * *
27762769 TATATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTGTATTCAGGCCTTCGTGCCTA
1 TATATTCAGGCCTTCGTGCCTAGCAGGCTTCATGCCAGTGATGTGCATTCAGGCCTTCGTGCCTA
*
27762834 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGT
66 GCAGGCTTCGTGCCGGTGATGTGTATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGT
27762899 GTATTCGGGCCTTCGTGCCGGTGATG
131 GTATTCGGGCCTTCGTGCCGGTGATG
* * *
27762925 TATATTCAGGCCTTCGTGCCTAGCAGGCTTCATGTCGGTGATGTGCATTCGGGCCTTCGTGCCTA
1 TATATTCAGGCCTTCGTGCCTAGCAGGCTTCATGCCAGTGATGTGCATTCAGGCCTTCGTGCCTA
* * *
27762990 GCAGGCTTCGTGCTGGTGATGTGTATTCAGGCCTTCGTTCCTAGCAGGCTTCGTGTCGGTGATGT
66 GCAGGCTTCGTGCCGGTGATGTGTATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGT
27763055 GTATTCGGGCCTTCGTGCC
131 GTATTCGGGCCTTCGTGCC
27763074 TAGCAGGCGT
Statistics
Matches: 139, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
156 139 1.00
ACGTcount: A:0.11, C:0.25, G:0.32, T:0.32
Consensus pattern (156 bp):
TATATTCAGGCCTTCGTGCCTAGCAGGCTTCATGCCAGTGATGTGCATTCAGGCCTTCGTGCCTA
GCAGGCTTCGTGCCGGTGATGTGTATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGT
GTATTCGGGCCTTCGTGCCGGTGATG
Found at i:27762980 original size:43 final size:43
Alignment explanation
Indices: 27762909--27763081 Score: 267
Period size: 43 Copynumber: 4.0 Consensus size: 43
27762899 GTATTCGGGC
* *
27762909 CTTCGTGCCGGTGATGTATATTCAGGCCTTCGTGCCTAGCAGG
1 CTTCGTGTCGGTGATGTGTATTCAGGCCTTCGTGCCTAGCAGG
* * *
27762952 CTTCATGTCGGTGATGTGCATTCGGGCCTTCGTGCCTAGCAGG
1 CTTCGTGTCGGTGATGTGTATTCAGGCCTTCGTGCCTAGCAGG
*
27762995 CTTCGTG-CTGGTGATGTGTATTCAGGCCTTCGTTCCTAGCAGG
1 CTTCGTGTC-GGTGATGTGTATTCAGGCCTTCGTGCCTAGCAGG
*
27763038 CTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGG
1 CTTCGTGTCGGTGATGTGTATTCAGGCCTTCGTGCCTAGCAGG
27763081 C
1 C
27763082 GTAATGCCAG
Statistics
Matches: 117, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
42 1 0.01
43 115 0.98
44 1 0.01
ACGTcount: A:0.12, C:0.25, G:0.32, T:0.32
Consensus pattern (43 bp):
CTTCGTGTCGGTGATGTGTATTCAGGCCTTCGTGCCTAGCAGG
Found at i:27762994 original size:113 final size:113
Alignment explanation
Indices: 27762792--27763027 Score: 402
Period size: 113 Copynumber: 2.1 Consensus size: 113
27762782 TCGTGCCTAG
* *
27762792 CAGG-CTTCGTGCCAGTGATGTGTATTCAGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGT
1 CAGGCCTTCGTGCCAGTGATGTATATTCAGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGT
*
27762856 GTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATT
66 GCATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATT
* * *
27762904 CGGGCCTTCGTGCCGGTGATGTATATTCAGGCCTTCGTGCCTAGCAGGCTTCATGTCGGTGATGT
1 CAGGCCTTCGTGCCAGTGATGTATATTCAGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGT
*
27762969 GCATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCTGGTGATGTGTATT
66 GCATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATT
27763017 CAGGCCTTCGT
1 CAGGCCTTCGT
27763028 TCCTAGCAGG
Statistics
Matches: 115, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
112 3 0.03
113 112 0.97
ACGTcount: A:0.11, C:0.25, G:0.33, T:0.31
Consensus pattern (113 bp):
CAGGCCTTCGTGCCAGTGATGTATATTCAGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGT
GCATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATT
Found at i:27763054 original size:86 final size:86
Alignment explanation
Indices: 27762909--27763081 Score: 301
Period size: 86 Copynumber: 2.0 Consensus size: 86
27762899 GTATTCGGGC
27762909 CTTCGTGCCGGTGATGTATATTCAGGCCTTCGTGCCTAGCAGGCTTCATGTCGGTGATGTGCATT
1 CTTCGTGCCGGTGATGTATATTCAGGCCTTCGTGCCTAGCAGGCTTCATGTCGGTGATGTGCATT
27762974 CGGGCCTTCGTGCCTAGCAGG
66 CGGGCCTTCGTGCCTAGCAGG
* * * * *
27762995 CTTCGTGCTGGTGATGTGTATTCAGGCCTTCGTTCCTAGCAGGCTTCGTGTCGGTGATGTGTATT
1 CTTCGTGCCGGTGATGTATATTCAGGCCTTCGTGCCTAGCAGGCTTCATGTCGGTGATGTGCATT
27763060 CGGGCCTTCGTGCCTAGCAGG
66 CGGGCCTTCGTGCCTAGCAGG
27763081 C
1 C
27763082 GTAATGCCAG
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
86 82 1.00
ACGTcount: A:0.12, C:0.25, G:0.32, T:0.32
Consensus pattern (86 bp):
CTTCGTGCCGGTGATGTATATTCAGGCCTTCGTGCCTAGCAGGCTTCATGTCGGTGATGTGCATT
CGGGCCTTCGTGCCTAGCAGG
Done.