Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 94 of 295
Found at i:29958460 original size:386 final size:386
Alignment explanation
Indices: 29957740--29958510 Score: 1240
Period size: 386 Copynumber: 2.0 Consensus size: 386
29957730 CTAGGGTCAC
* *
29957740 ATGGGCATGTCCTTTGGACCACATGGGCGTGTAAGCCGTACACCTTGGAAAAATTGTGAAAAGTC
1 ATGGGCATGTCCTTTGGACCACACGGGCGTGTAAGCCCTACACCTTGGAAAAATTGTGAAAAGTC
* * * * *
29957805 ACAAAAAATTCTTAGAGGTCCTAATTAAGTCCCGATTCGATTCTAATGCTCGTATTAGGCTTTGA
66 ACAAAAAATTCTTAAAGGTCCTAATTAAGTCCCGAATCGATTCTAATGCTCATATTAGGCCTCGA
29957870 GGGCCTGATCAAGGGACATTATGGATGATCTCGATAAATAAATAGTAATTTACGTAGTTTAATGG
131 GGGCCTGATCAAGGGACATTATGGATGATCTCGATAAATAAATAGTAATTTACGTAGTTTAATGG
* *
29957935 AAAAATATTCTGAATGTTCTAGTAATGCTTCAAAACCCTATTTCGGCGAGGGATACAGGTTAAGG
196 AAAAACATTCTGAATGTTCTAGTAATACTTCAAAACCCTATTTCGGCGAGGGATACAGGTTAAGG
**
29958000 GTGTTACAAAAGAAATTTGAAAAGACTAAATTCAACTATATTTAGCAAAATTCCCACCTCTCTTC
261 GTGTTACAAAAGAAATTTGAAAAGACTAAACCCAACTATATTTAGCAAAATTCCCACCTCTCTTC
* * *
29958065 ACCTATAAATAGGACCCCTTCATTCCTTCATTCATCATCCCTCATCCATCATTACTCTCTA
326 ACCTATAAATAAGACCCCTTCATTCCTTAATTCATCATCCCTCATCCATCATCACTCTCTA
* * *
29958126 ATGGGCGTGTCCTTTGGACCACACGGGCGTGTGAGCCCTACACCTTGGAAAAATTGTGAAAAGTT
1 ATGGGCATGTCCTTTGGACCACACGGGCGTGTAAGCCCTACACCTTGGAAAAATTGTGAAAAGTC
** * *
29958191 ATGAAAAATTCTTAAAGGTCCTAATTAAGTCCCGAATCGATTCTAATGCTCATGTTGGGCCTCGA
66 ACAAAAAATTCTTAAAGGTCCTAATTAAGTCCCGAATCGATTCTAATGCTCATATTAGGCCTCGA
29958256 GGGCCTGATCAAGGGACATTATGGATGATCTCGATAAATAAATAGTAATTTACGTAGTTTAATGG
131 GGGCCTGATCAAGGGACATTATGGATGATCTCGATAAATAAATAGTAATTTACGTAGTTTAATGG
*
29958321 AAAAACGTTCTGAATGTTCTAGTAATACTTCAAAACCCTATTTCGGCGAGGCG-TAC-GGATTAA
196 AAAAACATTCTGAATGTTCTAGTAATACTTCAAAACCCTATTTCGGCGAGG-GATACAGG-TTAA
* * * * * * *
29958384 GGGTGTTACAAAAGAAGTTTGAAGAGACTAAACCCAACTATTTTTAGTAAACTTCCGAGCTCTCT
259 GGGTGTTACAAAAGAAATTTGAAAAGACTAAACCCAACTATATTTAGCAAAATTCCCACCTCTCT
*
29958449 TCACCTATAAATAAGACCCCTTCATTCCTTAATTCATGATCCCTCATCCATCATCACTCTCT
324 TCACCTATAAATAAGACCCCTTCATTCCTTAATTCATCATCCCTCATCCATCATCACTCTCT
29958511 CAATTCTGTT
Statistics
Matches: 353, Mismatches: 30, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
385 2 0.01
386 350 0.99
387 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.30
Consensus pattern (386 bp):
ATGGGCATGTCCTTTGGACCACACGGGCGTGTAAGCCCTACACCTTGGAAAAATTGTGAAAAGTC
ACAAAAAATTCTTAAAGGTCCTAATTAAGTCCCGAATCGATTCTAATGCTCATATTAGGCCTCGA
GGGCCTGATCAAGGGACATTATGGATGATCTCGATAAATAAATAGTAATTTACGTAGTTTAATGG
AAAAACATTCTGAATGTTCTAGTAATACTTCAAAACCCTATTTCGGCGAGGGATACAGGTTAAGG
GTGTTACAAAAGAAATTTGAAAAGACTAAACCCAACTATATTTAGCAAAATTCCCACCTCTCTTC
ACCTATAAATAAGACCCCTTCATTCCTTAATTCATCATCCCTCATCCATCATCACTCTCTA
Found at i:29961210 original size:22 final size:22
Alignment explanation
Indices: 29961185--29961228 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
29961175 TTATACTAAA
29961185 AGAGTCAGAATCTGCAAAGACT
1 AGAGTCAGAATCTGCAAAGACT
29961207 AGAGTCAGAATCTGCAAAGACT
1 AGAGTCAGAATCTGCAAAGACT
29961229 GACAAGGTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.18, G:0.23, T:0.18
Consensus pattern (22 bp):
AGAGTCAGAATCTGCAAAGACT
Found at i:29971786 original size:34 final size:34
Alignment explanation
Indices: 29971748--29971817 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
29971738 TATTTGTTAC
29971748 TTTTAATTGCTTGGAAGGGCTATTTTTGGTGGAT
1 TTTTAATTGCTTGGAAGGGCTATTTTTGGTGGAT
*
29971782 TTTTAATTGCTTGGAAGGGCTGTTTTTGGTGGAT
1 TTTTAATTGCTTGGAAGGGCTATTTTTGGTGGAT
29971816 TT
1 TT
29971818 ACATGTACAG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.16, C:0.06, G:0.30, T:0.49
Consensus pattern (34 bp):
TTTTAATTGCTTGGAAGGGCTATTTTTGGTGGAT
Found at i:29980011 original size:46 final size:44
Alignment explanation
Indices: 29979868--29980011 Score: 123
Period size: 46 Copynumber: 3.1 Consensus size: 44
29979858 ACTGCCCCTA
*
29979868 AGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTA-CATCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A---ACCATCT
* * * * *
29979915 CA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCAT-A
1 -AGTGAACTCGGACTCAACTCAACGAGTTCG--GATGC-CAACCATCT
29979961 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CAACCAT-CT
29980007 AGTGA
1 AGTGA
29980012 CATGTCACTT
Statistics
Matches: 77, Mismatches: 12, Indels: 16
0.73 0.11 0.15
Matches are distributed among these distances:
44 9 0.12
45 1 0.01
46 32 0.42
47 29 0.38
48 1 0.01
49 4 0.05
50 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (44 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCAACCATCT
Found at i:29981521 original size:25 final size:24
Alignment explanation
Indices: 29981406--29981528 Score: 212
Period size: 24 Copynumber: 5.1 Consensus size: 24
29981396 GCCTAGCCTC
29981406 TTTAATAACTGGGGCA-AAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
*
29981429 TTTAATAGCTGGGGCATAAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
29981453 TTTAATAACTGGGGCATAAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
*
29981477 TTTAATAGCTGGGGCATAAGCCCT
1 TTTAATAACTGGGGCATAAGCCCT
29981501 TTTAATAACTGGGGGCATAAGCCCT
1 TTTAATAACT-GGGGCATAAGCCCT
29981526 TTT
1 TTT
29981529 GCACTTCCTC
Statistics
Matches: 94, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
23 15 0.16
24 62 0.66
25 17 0.18
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (24 bp):
TTTAATAACTGGGGCATAAGCCCT
Found at i:29985380 original size:32 final size:32
Alignment explanation
Indices: 29985337--29985401 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
29985327 CTAATTTTAA
29985337 TGGTCACTAAATCAGACATTAAATGTCTCTAG
1 TGGTCACTAAATCAGACATTAAATGTCTCTAG
*
29985369 TGGTCATTAAATCAGACATTAAATGTCTCTAG
1 TGGTCACTAAATCAGACATTAAATGTCTCTAG
29985401 T
1 T
29985402 ATTGATACTT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (32 bp):
TGGTCACTAAATCAGACATTAAATGTCTCTAG
Found at i:29987932 original size:15 final size:14
Alignment explanation
Indices: 29987912--29987941 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
29987902 AAATTCGCCA
29987912 AAATCTTAAATTAAT
1 AAATCTTAAA-TAAT
29987927 AAATCTTAAATAAT
1 AAATCTTAAATAAT
29987941 A
1 A
29987942 TTTATCAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (14 bp):
AAATCTTAAATAAT
Found at i:29988225 original size:27 final size:27
Alignment explanation
Indices: 29988195--29988252 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
29988185 ACCTAAATCC
29988195 AAATGTAAAAACCTTATGGTTTCATTA
1 AAATGTAAAAACCTTATGGTTTCATTA
*
29988222 AAATGTAAAAACCTTATGGTTTTATTA
1 AAATGTAAAAACCTTATGGTTTCATTA
29988249 AAAT
1 AAAT
29988253 ATTGTAACAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.43, C:0.09, G:0.10, T:0.38
Consensus pattern (27 bp):
AAATGTAAAAACCTTATGGTTTCATTA
Found at i:29989623 original size:45 final size:45
Alignment explanation
Indices: 29989570--29989657 Score: 131
Period size: 45 Copynumber: 2.0 Consensus size: 45
29989560 TTATGTGGTA
* * * *
29989570 TGAACTCATTGAGTTGTGGTTTTAGTTCATGATATATGTGACATC
1 TGAACTCATTGAGTTGTGATCTGAATTCATGATATATGTGACATC
*
29989615 TGAACTCATTGAGTTGTGATCTGAATTCATGATGTATGTGACA
1 TGAACTCATTGAGTTGTGATCTGAATTCATGATATATGTGACA
29989658 CATGTTTTGG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.26, C:0.11, G:0.23, T:0.40
Consensus pattern (45 bp):
TGAACTCATTGAGTTGTGATCTGAATTCATGATATATGTGACATC
Found at i:29993116 original size:39 final size:39
Alignment explanation
Indices: 29993062--29993187 Score: 162
Period size: 39 Copynumber: 3.2 Consensus size: 39
29993052 TTCAGTGATG
*
29993062 TATATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
**
29993101 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTAAAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * * * * *
29993140 TATATCTGGACTTAAGATCCGTAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
29993179 TATGTCCGG
1 TATATCCGG
29993188 GTTAAAGTCC
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 74 1.00
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:29993201 original size:78 final size:78
Alignment explanation
Indices: 29993062--29993205 Score: 191
Period size: 78 Copynumber: 1.8 Consensus size: 78
29993052 TTCAGTGATG
* * * * **
29993062 TATATCTGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTATATCCGGACTTAGGGTCCGCAGGC
1 TATATCTGGACTTAAGATCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
29993127 TATGTGCTAAAAT
66 TATGTGCTAAAAT
* * *
29993140 TATATCTGGACTTAAGATCCGTAGGCTACGTGCTGGAAATATGTCCGG-GTTAAAGTCCCGCAGG
1 TATATCTGGACTTAAGATCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGT-CCGCAGG
29993204 CT
65 CT
29993206 TCGAGATGGT
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
77 5 0.09
78 51 0.91
ACGTcount: A:0.24, C:0.20, G:0.28, T:0.28
Consensus pattern (78 bp):
TATATCTGGACTTAAGATCCGCAGGCTACGTGCTGGAAATATATCCGGACTTAAAGTCCGCAGGC
TATGTGCTAAAAT
Found at i:29995753 original size:37 final size:37
Alignment explanation
Indices: 29995703--29995778 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
29995693 GTGATATTTC
29995703 CTTATTGAGAGACACTACATATCATTGGTGGAAGACA
1 CTTATTGAGAGACACTACATATCATTGGTGGAAGACA
*
29995740 CTTATTGAGAGACACTGCATATCATTGGTGGAAGACA
1 CTTATTGAGAGACACTACATATCATTGGTGGAAGACA
29995777 CT
1 CT
29995779 CAAAGGGTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (37 bp):
CTTATTGAGAGACACTACATATCATTGGTGGAAGACA
Found at i:30007089 original size:27 final size:26
Alignment explanation
Indices: 30007050--30007134 Score: 71
Period size: 27 Copynumber: 3.2 Consensus size: 26
30007040 CAACGACGGT
* *
30007050 AATATAATCGACACACAGCCATGGGTA
1 AATATGATAGACACACAGCCAT-GGTA
* * * *
30007077 AATATGATTGACACAGAGTCATCGATA
1 AATATGATAGACACACAGCCAT-GGTA
* *
30007104 AATATGATAGGCACATAGCCACTGGTA
1 AATATGATAGACACACAGCCA-TGGTA
30007131 AATA
1 AATA
30007135 CAATTTGCAC
Statistics
Matches: 46, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
27 45 0.98
28 1 0.02
ACGTcount: A:0.41, C:0.18, G:0.19, T:0.22
Consensus pattern (26 bp):
AATATGATAGACACACAGCCATGGTA
Found at i:30008935 original size:24 final size:24
Alignment explanation
Indices: 30008907--30008973 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 24
30008897 CTCCTTAAAT
* *
30008907 CTCTCCATAAATCACTCCTTGATT
1 CTCTCCATAAATCACTCCATGATA
* * *
30008931 TTCTCC-TAATATCTCACCATGATA
1 CTCTCCATAA-ATCACTCCATGATA
*
30008955 CACTCCATAAATCACTCCA
1 CTCTCCATAAATCACTCCA
30008974 ACCTCCCATT
Statistics
Matches: 32, Mismatches: 9, Indels: 4
0.71 0.20 0.09
Matches are distributed among these distances:
23 3 0.09
24 26 0.81
25 3 0.09
ACGTcount: A:0.30, C:0.34, G:0.03, T:0.33
Consensus pattern (24 bp):
CTCTCCATAAATCACTCCATGATA
Found at i:30016452 original size:44 final size:43
Alignment explanation
Indices: 30016376--30016508 Score: 144
Period size: 42 Copynumber: 3.1 Consensus size: 43
30016366 CATAGGATTC
* **
30016376 CGATATGTGATTTCGTGTAAGACCACATCTGGGACGTTGGCAT
1 CGATATATGATTTCGTGTAAGACCATGTCTGGGACGTTGGCAT
* * * *
30016419 CGATTTCTTATTTACGTGTAAGACCATGTCTGGGACATTGGCAT
1 CGATATATGATTT-CGTGTAAGACCATGTCTGGGACGTTGGCAT
* * *
30016463 TG-TATATGAGTTCGTGTAAGACCCTGTCTGGGACAG-TGGCAT
1 CGATATATGATTTCGTGTAAGACCATGTCTGGGAC-GTTGGCAT
30016505 CGAT
1 CGAT
30016509 GTGTGATTAT
Statistics
Matches: 73, Mismatches: 14, Indels: 6
0.78 0.15 0.06
Matches are distributed among these distances:
42 28 0.38
43 17 0.23
44 28 0.38
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (43 bp):
CGATATATGATTTCGTGTAAGACCATGTCTGGGACGTTGGCAT
Found at i:30019303 original size:157 final size:152
Alignment explanation
Indices: 30018944--30019394 Score: 521
Period size: 157 Copynumber: 3.0 Consensus size: 152
30018934 CAAAAATTTC
* * * * *
30018944 TTTAAAAAAATCACAACTTTTCTTAAAAATCAAAGTTTTATTTTGAAATAATTG-AAAATGGTCA
1 TTTAAAAAAATCACTATTTTTCTTAAAAATCAAAGTTTTATTTCGAAATAGTTGAAAAAT-ATCA
***
30019008 AAACTTTGTTTTAAAAATTTAAAATTTTCCTTTAAAATGACTAAAATTTTA-TTTTATTTTTAAA
65 AAACTTTGTTTTAAAAATTTAAAATTTTCCTTTAAAATGACTAAAAAAATATTTTTA-TTTTAAA
30019072 AA-CTAAACTTTCTC---TTTTTT
129 AATCTAAACTTTCTCTTTTTTTTT
* * * * *
30019092 TTT----AAGTCACTATCTTTCTTAAAAATCAAAGCTTTATTTCGAAATAGTTTAAAAATATCGA
1 TTTAAAAAAATCACTATTTTTCTTAAAAATCAAAGTTTTATTTCGAAATAGTTGAAAAATATCAA
* * *
30019153 AACTTTGTTTTAAAAAATTTAAAGTTTTCCTTTAAAATGACTAAAAAAAAGATTTTTATTTGAAA
66 AACTTTGTTTT-AAAAATTTAAAATTTTCCTTTAAAATGACT-AAAAAAATATTTTTATTTTAAA
*
30019218 AATCTGAACTTTCTCTTTTTTTTT
129 AATCTAAACTTTCTCTTTTTTTTT
* * * *
30019242 TTTAAAAAAAAACTCACTATTTTTCTTAAAAATCAAAGTTTTATTACAAAATTGTTGAAAAAGAT
1 TTT--AAAAAAA-TCACTATTTTTCTTAAAAATCAAAGTTTTATTTCGAAATAGTTGAAAAATAT
* * * * *
30019307 CAAAACTTTGTTTCAAAAATTTAAACTTTTCCTTTAATACGACTAAAAACATATTTTTATTTTAA
63 CAAAACTTTGTTTTAAAAATTTAAAATTTTCCTTTAAAATGACTAAAAAAATATTTTTATTTTAA
30019372 AAATCTAAAC--TCTCTTTTTTTTT
128 AAATCTAAACTTTCTCTTTTTTTTT
30019395 AAAAAAAAAT
Statistics
Matches: 254, Mismatches: 34, Indels: 25
0.81 0.11 0.08
Matches are distributed among these distances:
144 53 0.21
145 34 0.13
146 13 0.05
147 16 0.06
148 3 0.01
150 9 0.04
153 13 0.05
155 27 0.11
156 29 0.11
157 57 0.22
ACGTcount: A:0.40, C:0.11, G:0.05, T:0.44
Consensus pattern (152 bp):
TTTAAAAAAATCACTATTTTTCTTAAAAATCAAAGTTTTATTTCGAAATAGTTGAAAAATATCAA
AACTTTGTTTTAAAAATTTAAAATTTTCCTTTAAAATGACTAAAAAAATATTTTTATTTTAAAAA
TCTAAACTTTCTCTTTTTTTTT
Found at i:30021388 original size:39 final size:39
Alignment explanation
Indices: 30021315--30021544 Score: 244
Period size: 39 Copynumber: 5.9 Consensus size: 39
30021305 TAGATAACTA
* * * * *
30021315 TTGTACTCCGGTATCCCTGACCGCTCTTACGTGCCCCTA
1 TTGTACTTCGGTACCCCTGATCGCACTTACGTGCCCCTG
* * * * * *
30021354 TTGTATTTTGGTACCCTTGGTCGCACTTAAGTGCCCTTG
1 TTGTACTTCGGTACCCCTGATCGCACTTACGTGCCCCTG
* * * *
30021393 TTGTATTTCAGTACCCCTGATCGCACTTACTTGCCCTTG
1 TTGTACTTCGGTACCCCTGATCGCACTTACGTGCCCCTG
* *
30021432 TTGTACTTCGGTACCCCTGATCGCACTTACGTGCCTCTA
1 TTGTACTTCGGTACCCCTGATCGCACTTACGTGCCCCTG
* * *
30021471 TTGTAATTTGGTACCCCTGACCGCACTTACGTGCCCCTG
1 TTGTACTTCGGTACCCCTGATCGCACTTACGTGCCCCTG
* * * *
30021510 TTGTACTTCGGTACTCTTGATAGCACTTTCGTGCC
1 TTGTACTTCGGTACCCCTGATCGCACTTACGTGCC
30021545 GTGTTTACGT
Statistics
Matches: 156, Mismatches: 35, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 156 1.00
ACGTcount: A:0.14, C:0.31, G:0.19, T:0.36
Consensus pattern (39 bp):
TTGTACTTCGGTACCCCTGATCGCACTTACGTGCCCCTG
Found at i:30021536 original size:117 final size:117
Alignment explanation
Indices: 30021315--30021537 Score: 302
Period size: 117 Copynumber: 1.9 Consensus size: 117
30021305 TAGATAACTA
* * * * **
30021315 TTGTACTCCGGTATCCCTGACCGCTCTTACGTGCCCCTATTGTATTTTGGTACCCTTGGTCGCAC
1 TTGTACTCCGGTACCCCTGACCGCACTTACGTGCCCCTATTGTAATTTGGTACCCCTGACCGCAC
* * *
30021380 TTAAGTGCCCTTGTTGTATTTCAGTACCCCTGATCGCACTTACTTGCCCTTG
66 TTAAGTGCCCCTGTTGTACTTCAGTACCCCTGATAGCACTTACTTGCCCTTG
* * *
30021432 TTGTACTTCGGTACCCCTGATCGCACTTACGTGCCTCTATTGTAATTTGGTACCCCTGACCGCAC
1 TTGTACTCCGGTACCCCTGACCGCACTTACGTGCCCCTATTGTAATTTGGTACCCCTGACCGCAC
* * * *
30021497 TTACGTGCCCCTGTTGTACTTCGGTACTCTTGATAGCACTT
66 TTAAGTGCCCCTGTTGTACTTCAGTACCCCTGATAGCACTT
30021538 TCGTGCCGTG
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
117 90 1.00
ACGTcount: A:0.15, C:0.30, G:0.19, T:0.36
Consensus pattern (117 bp):
TTGTACTCCGGTACCCCTGACCGCACTTACGTGCCCCTATTGTAATTTGGTACCCCTGACCGCAC
TTAAGTGCCCCTGTTGTACTTCAGTACCCCTGATAGCACTTACTTGCCCTTG
Found at i:30021543 original size:78 final size:78
Alignment explanation
Indices: 30021313--30021544 Score: 270
Period size: 78 Copynumber: 3.0 Consensus size: 78
30021303 AGTAGATAAC
* * * * * * * *
30021313 TATTGTACTCCGGTATCCCTGACCGCTCTTACGTGCCCCTATTGTATTTTGGTACCCTTGGTCGC
1 TATTGTATTTCGGTACCCCTGACCGCACTTACGTGCCCCTGTTGTACTTCGGTACCCTTGATCGC
*
30021378 ACTTAAGTGCCCT
66 ACTTACGTGCCCT
* * * * * *
30021391 TGTTGTATTTCAGTACCCCTGATCGCACTTACTTGCCCTTGTTGTACTTCGGTACCCCTGATCGC
1 TATTGTATTTCGGTACCCCTGACCGCACTTACGTGCCCCTGTTGTACTTCGGTACCCTTGATCGC
30021456 ACTTACGTG-CCT
66 ACTTACGTGCCCT
* *
30021468 CTATTGTAATTT-GGTACCCCTGACCGCACTTACGTGCCCCTGTTGTACTTCGGTACTCTTGATA
1 -TATTGT-ATTTCGGTACCCCTGACCGCACTTACGTGCCCCTGTTGTACTTCGGTACCCTTGATC
*
30021532 GCACTTTCGTGCC
64 GCACTTACGTGCC
30021545 GTGTTTACGT
Statistics
Matches: 127, Mismatches: 24, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
77 3 0.02
78 119 0.94
79 5 0.04
ACGTcount: A:0.15, C:0.31, G:0.19, T:0.36
Consensus pattern (78 bp):
TATTGTATTTCGGTACCCCTGACCGCACTTACGTGCCCCTGTTGTACTTCGGTACCCTTGATCGC
ACTTACGTGCCCT
Found at i:30023166 original size:27 final size:27
Alignment explanation
Indices: 30023136--30023199 Score: 74
Period size: 27 Copynumber: 2.4 Consensus size: 27
30023126 GGGAAAAATG
*
30023136 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCCACAAGGGTATCTCA
* * * *
30023163 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCCACAAGGGTATCTCA
*
30023190 GTATTTCTAC
1 GTAATTCTAC
30023200 AACTTATCTA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCCACAAGGGTATCTCA
Found at i:30025837 original size:27 final size:29
Alignment explanation
Indices: 30025805--30025864 Score: 79
Period size: 27 Copynumber: 2.1 Consensus size: 29
30025795 TCTCTCTCTA
*
30025805 TTTTCTTTTCTT-TTTTTTTG-GTTTCTT
1 TTTTCTTTTCTTGTTTTGTTGTGTTTCTT
* *
30025832 TTTTCTTTTGTTGTTTTGTTGTTTTTCTT
1 TTTTCTTTTCTTGTTTTGTTGTGTTTCTT
30025861 TTTT
1 TTTT
30025865 TTCTCCAAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 11 0.39
28 7 0.25
29 10 0.36
ACGTcount: A:0.00, C:0.08, G:0.10, T:0.82
Consensus pattern (29 bp):
TTTTCTTTTCTTGTTTTGTTGTGTTTCTT
Found at i:30025838 original size:22 final size:20
Alignment explanation
Indices: 30025810--30025866 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 20
30025800 CTCTATTTTC
*
30025810 TTTTCTTTTTTTTTGGTTTCTT
1 TTTTCTTTTTTTTTGG-TT-GT
*
30025832 TTTTCTTTTGTTGTTTTGTTGT
1 TTTTCTTTT-TT-TTTGGTTGT
30025854 TTTTCTTTTTTTT
1 TTTTCTTTTTTTT
30025867 CTCCAAGTAG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
20 2 0.06
21 2 0.06
22 19 0.61
23 4 0.13
24 4 0.13
ACGTcount: A:0.00, C:0.07, G:0.11, T:0.82
Consensus pattern (20 bp):
TTTTCTTTTTTTTTGGTTGT
Found at i:30028273 original size:30 final size:32
Alignment explanation
Indices: 30028237--30028309 Score: 78
Period size: 36 Copynumber: 2.2 Consensus size: 32
30028227 TATCCTACTT
*
30028237 TGAACATG-G-TAGCTAGATTGTTCGTACAAG
1 TGAACATGTGATAGCTACATTGTTCGTACAAG
*
30028267 TGAACATTGTTTGTATAGCTACATTGTTCGTACATG
1 TGAACA-TG--TG-ATAGCTACATTGTTCGTACAAG
30028303 TGAACAT
1 TGAACAT
30028310 CAGTTCAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
30 6 0.17
31 2 0.06
34 1 0.03
35 1 0.03
36 25 0.71
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.36
Consensus pattern (32 bp):
TGAACATGTGATAGCTACATTGTTCGTACAAG
Found at i:30028277 original size:19 final size:19
Alignment explanation
Indices: 30028253--30028309 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 19
30028243 TGGTAGCTAG
30028253 ATTGTTCGTACAAGTGAAC
1 ATTGTTCGTACAAGTGAAC
* *
30028272 ATTGTTTGTA-TAGCT--AC
1 ATTGTTCGTACAAG-TGAAC
*
30028289 ATTGTTCGTACATGTGAAC
1 ATTGTTCGTACAAGTGAAC
30028308 AT
1 AT
30028310 CAGTTCAATT
Statistics
Matches: 29, Mismatches: 5, Indels: 8
0.69 0.12 0.19
Matches are distributed among these distances:
17 12 0.41
18 3 0.10
19 14 0.48
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.39
Consensus pattern (19 bp):
ATTGTTCGTACAAGTGAAC
Found at i:30030961 original size:40 final size:40
Alignment explanation
Indices: 30030880--30031097 Score: 330
Period size: 40 Copynumber: 5.5 Consensus size: 40
30030870 CAGCCAAGTA
** * * *
30030880 CCTTCGGGGTTTAG-CCGGATATAGTTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
** * *
30030919 CCTTCGGGACTTAGCCCGGTTATAGAAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
30030959 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
30030999 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
*
30031039 CCTTCGGGACTTAGCCCGAAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
*
30031079 CCTTCGGGACATAGCCCGG
1 CCTTCGGGACTTAGCCCGG
30031098 TTATCATCCA
Statistics
Matches: 164, Mismatches: 14, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
39 12 0.07
40 152 0.93
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
Found at i:30038662 original size:40 final size:40
Alignment explanation
Indices: 30038581--30038754 Score: 233
Period size: 40 Copynumber: 4.4 Consensus size: 40
30038571 CAACCAAGTA
** * * * *
30038581 CCTTCGGGGTTTAG-CCGGATATAGTTACTCACTCAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
** * * *
30038620 CCTTCGGGACTTAGCCCGGTTATAGTAACCCGTACAATTG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
30038660 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
*
30038700 CCTTCGGGACTTAGCCCGGAAATAGTAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
30038740 CCTTCGGGACTTAGC
1 CCTTCGGGACTTAGC
30038755 TCAGTTATCA
Statistics
Matches: 119, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
39 12 0.10
40 107 0.90
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATG
Found at i:30041573 original size:105 final size:106
Alignment explanation
Indices: 30041441--30041651 Score: 309
Period size: 105 Copynumber: 2.0 Consensus size: 106
30041431 ATCCTTAATG
* * * * *
30041441 CACACATATTCTTTGGGAGGCTTGATCACTCAAGGAACACCTGTCCGGACTAGATCCTTTTGTAT
1 CACACATATTCTTCGGAAGGCTCGATCACTCAAGGAACACCCGTCCGGACTAGATCCTTTTCTAT
* *
30041506 ATTTGAGATCAACGGATTA-CTCATCCAGGTTAAATCATTTT
66 ATTTGAGATCAACAGATTAGC-CATCCAGGCTAAATCATTTT
* *
30041547 CACACAT-TTCTTCGGAAGGCTCGATCACTCAAGGAACACCCGTCTGGGCTAGATCCTTTTCTAT
1 CACACATATTCTTCGGAAGGCTCGATCACTCAAGGAACACCCGTCCGGACTAGATCCTTTTCTAT
*
30041611 ATTTGAGATCAACAGATTAGCCATCCGGGCTAAATCATTTT
66 ATTTGAGATCAACAGATTAGCCATCCAGGCTAAATCATTTT
30041652 TTGCAACACA
Statistics
Matches: 94, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
105 86 0.91
106 8 0.09
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (106 bp):
CACACATATTCTTCGGAAGGCTCGATCACTCAAGGAACACCCGTCCGGACTAGATCCTTTTCTAT
ATTTGAGATCAACAGATTAGCCATCCAGGCTAAATCATTTT
Found at i:30042187 original size:32 final size:32
Alignment explanation
Indices: 30042132--30042214 Score: 127
Period size: 32 Copynumber: 2.7 Consensus size: 32
30042122 ATTTTTACAA
30042132 ATTTGCA-TTTTGACCCC--TAAACTTTCACAT
1 ATTTGCACTTTTG-CCCCAATAAACTTTCACAT
30042162 ATTTGCACTTTTGCCCCAATAAACTTTCACAT
1 ATTTGCACTTTTGCCCCAATAAACTTTCACAT
*
30042194 ATTTGCACTTTTACCCCAATA
1 ATTTGCACTTTTGCCCCAATA
30042215 CTCGTAAAAT
Statistics
Matches: 49, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
30 11 0.22
31 5 0.10
32 33 0.67
ACGTcount: A:0.28, C:0.28, G:0.06, T:0.39
Consensus pattern (32 bp):
ATTTGCACTTTTGCCCCAATAAACTTTCACAT
Found at i:30044273 original size:43 final size:43
Alignment explanation
Indices: 30044212--30044425 Score: 351
Period size: 43 Copynumber: 5.0 Consensus size: 43
30044202 ATTACACCTA
* *
30044212 CTAGGCACGAAGGCCCGAATACACATCACCGGTACGAAGCCTG
1 CTAGGCACGAAGGCCCGAATACACATCACCGGCACTAAGCCTG
30044255 CTAGGCACGAAGGCCCGAATACACATCACCGGCACTAAGCCTG
1 CTAGGCACGAAGGCCCGAATACACATCACCGGCACTAAGCCTG
*
30044298 CTAGGCACGAAGGCCAGAATACACATCACCGGCACTAAGCCTG
1 CTAGGCACGAAGGCCCGAATACACATCACCGGCACTAAGCCTG
30044341 CTAGGCACGAAGGCCCGAATACACATCACCGGCACTAAGCCTG
1 CTAGGCACGAAGGCCCGAATACACATCACCGGCACTAAGCCTG
* * * *
30044384 CTAAGCACGAAGGCCCGAATATA-AT-ACCAGCACTAGGCCTG
1 CTAGGCACGAAGGCCCGAATACACATCACCGGCACTAAGCCTG
30044425 C
1 C
30044426 GGGATTTATC
Statistics
Matches: 163, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
41 15 0.09
42 2 0.01
43 146 0.90
ACGTcount: A:0.31, C:0.33, G:0.23, T:0.12
Consensus pattern (43 bp):
CTAGGCACGAAGGCCCGAATACACATCACCGGCACTAAGCCTG
Found at i:30044451 original size:38 final size:38
Alignment explanation
Indices: 30044397--30044480 Score: 123
Period size: 38 Copynumber: 2.2 Consensus size: 38
30044387 AGCACGAAGG
* * * *
30044397 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAT
1 CCCGAATATAATACCAGCACGAAGCCTACGGGATTTAA
*
30044435 CCCGGATATAATACCAGCACGAAGCCTACGGGATTTAA
1 CCCGAATATAATACCAGCACGAAGCCTACGGGATTTAA
30044473 CCCGAATA
1 CCCGAATA
30044481 CACATCAAAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.20
Consensus pattern (38 bp):
CCCGAATATAATACCAGCACGAAGCCTACGGGATTTAA
Found at i:30056187 original size:56 final size:56
Alignment explanation
Indices: 30056120--30056340 Score: 325
Period size: 56 Copynumber: 3.9 Consensus size: 56
30056110 TCTTACATGT
** * * *
30056120 AATCACATATCGATGCCAATGTACTAAACATGGTCTTACTCACACACATATATTGG
1 AATCACATATCGATGCCAACATATTAAACATGGTCTTACTCGCACACATATATTGA
* * *
30056176 AATCACATATCGATGCCAACATATTAAACATGGCCTTACTTGCACAAATATATTGA
1 AATCACATATCGATGCCAACATATTAAACATGGTCTTACTCGCACACATATATTGA
* * *
30056232 AATCACATATCGATGCCAACGTATTAAACATGGTCTTACTTGCACACATATATCGA
1 AATCACATATCGATGCCAACATATTAAACATGGTCTTACTCGCACACATATATTGA
**
30056288 AATCACATATCGATGCCAACATATTAAATGTGGTCTTACTCGCACACATATAT
1 AATCACATATCGATGCCAACATATTAAACATGGTCTTACTCGCACACATATAT
30056341 CGATGCCATG
Statistics
Matches: 149, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 149 1.00
ACGTcount: A:0.37, C:0.23, G:0.12, T:0.29
Consensus pattern (56 bp):
AATCACATATCGATGCCAACATATTAAACATGGTCTTACTCGCACACATATATTGA
Found at i:30065133 original size:40 final size:40
Alignment explanation
Indices: 30065078--30065203 Score: 193
Period size: 40 Copynumber: 3.2 Consensus size: 40
30065068 ATTTGATGTG
*
30065078 TATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTGGTAAAA
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
30065118 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
* * **
30065158 TATCCAGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
30065196 TATCCGGG
1 TATCCGGG
30065204 ATAAATCCCG
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
38 29 0.36
39 5 0.06
40 46 0.57
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (40 bp):
TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
Found at i:30065185 original size:38 final size:38
Alignment explanation
Indices: 30065078--30065230 Score: 180
Period size: 38 Copynumber: 3.9 Consensus size: 38
30065068 ATTTGATGTG
* *
30065078 TATCCGGGCTTAAAGACCCGCAGGCTTTGTGCTGGTAAAA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAAAA
*
30065118 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAAAA
* **
30065158 TATCCAGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
* * * *
30065196 TATCCGGGATAAATCCCGTAGGCCTAGTGCTGGTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
30065231 TTATATTCGG
Statistics
Matches: 103, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
38 52 0.50
39 5 0.05
40 46 0.45
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.26
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
Found at i:30065297 original size:43 final size:43
Alignment explanation
Indices: 30065234--30065532 Score: 472
Period size: 43 Copynumber: 7.0 Consensus size: 43
30065224 GCTGGTATTA
* * *
30065234 TATTCGGGCTTTCGTGCCTAGCAGGCTTTGTTCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
30065277 TATTCGGGCCTTCGTCCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
30065320 TATTCAGGCCTCCGTGCCTAGTAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* *
30065363 TATTCGGGCCTCCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
* * *
30065406 TATTCAGGCCTTCATGCCTAGCAGGCTTCGTGTCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
30065449 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
*
30065492 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGATG
1 TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATG
30065533 CTTCGTGTCG
Statistics
Matches: 234, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 234 1.00
ACGTcount: A:0.11, C:0.25, G:0.32, T:0.31
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
Found at i:30065550 original size:59 final size:59
Alignment explanation
Indices: 30065473--30065591 Score: 202
Period size: 59 Copynumber: 2.0 Consensus size: 59
30065463 TGCCTAGCAG
*
30065473 GCTTCGTGCCAGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
1 GCTTCGTGCCAGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATACCGGTGAT
* * *
30065532 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGAT
1 GCTTCGTGCCAGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATACCGGTGAT
30065591 G
1 G
30065592 TGTATTTGGG
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 56 1.00
ACGTcount: A:0.11, C:0.24, G:0.34, T:0.31
Consensus pattern (59 bp):
GCTTCGTGCCAGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATACCGGTGAT
Found at i:30065560 original size:102 final size:102
Alignment explanation
Indices: 30065430--30065619 Score: 353
Period size: 102 Copynumber: 1.9 Consensus size: 102
30065420 TGCCTAGCAG
*
30065430 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCAGTGATGTGTAT
1 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCAGTGATGTGTAT
30065495 TCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
66 TCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
*
30065532 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCGGTGATGTGTAT
1 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCAGTGATGTGTAT
*
30065597 TTGGGCCTTCGTGCCTAGCAGGC
66 TCGGGCCTTCGTGCCTAGCAGGC
30065620 GTAATGCCGG
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
102 85 1.00
ACGTcount: A:0.11, C:0.24, G:0.34, T:0.32
Consensus pattern (102 bp):
GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTCATGCCAGTGATGTGTAT
TCGGGCCTTCGTGCCTAGCAGGCTTCGTACCGGTGAT
Found at i:30065564 original size:43 final size:43
Alignment explanation
Indices: 30065532--30065632 Score: 139
Period size: 43 Copynumber: 2.3 Consensus size: 43
30065522 TACCGGTGAT
* * *
30065532 GCTTCGTGTCGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAG
1 GCTTCATGCCGGTGATGTGTATTCGGGCCTTCGTACCTAGCAG
* *
30065575 GCTTCATGCCGGTGATGTGTATTTGGGCCTTCGTGCCTAGCAG
1 GCTTCATGCCGGTGATGTGTATTCGGGCCTTCGTACCTAGCAG
* *
30065618 GCGTAATGCCGGTGA
1 GCTTCATGCCGGTGA
30065633 AATGATATGT
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.12, C:0.23, G:0.35, T:0.31
Consensus pattern (43 bp):
GCTTCATGCCGGTGATGTGTATTCGGGCCTTCGTACCTAGCAG
Found at i:30067690 original size:41 final size:41
Alignment explanation
Indices: 30067637--30067824 Score: 270
Period size: 41 Copynumber: 4.6 Consensus size: 41
30067627 CGCTGACTCA
* *
30067637 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * * * * *
30067678 GAAGGCCCTTCGAAACTAGGTTC-GATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
30067718 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
* * *
30067759 AATAGCCCTTCGAGACCAAGCTCAGATTATGACATTGGCTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
30067800 AAAAGCCCTTCGAGACCAAGCTCGG
1 AAAAGCCCTTCGAGACCAAGCTCGG
30067825 TTTTAAACCC
Statistics
Matches: 127, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
40 32 0.25
41 95 0.75
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (41 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTC
Found at i:30067730 original size:81 final size:82
Alignment explanation
Indices: 30067637--30067824 Score: 281
Period size: 81 Copynumber: 2.3 Consensus size: 82
30067627 CGCTGACTCA
* * * * *
30067637 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACATTGGCCCGAA-GGCCCTTCGAAACTAGGTTC
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCC-AATAGCCCTTCGAAACCAAGCTC
30067701 -GATTATGACACTGGCTC
65 AGATTATGACACTGGCTC
* *
30067718 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCTCAATAGCCCTTCGAGACCAAGCTCA
1 AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCCAATAGCCCTTCGAAACCAAGCTCA
*
30067783 GATTATGACATTGGCTC
66 GATTATGACACTGGCTC
30067800 AAAAGCCCTTCGAGACCAAGCTCGG
1 AAAAGCCCTTCGAGACCAAGCTCGG
30067825 TTTTAAACCC
Statistics
Matches: 97, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
80 2 0.02
81 54 0.56
82 41 0.42
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (82 bp):
AAAAGCCCTTCGAGACCAAGCTCGGATTATGACACTGGCCCAATAGCCCTTCGAAACCAAGCTCA
GATTATGACACTGGCTC
Found at i:30075528 original size:29 final size:29
Alignment explanation
Indices: 30075462--30075551 Score: 96
Period size: 29 Copynumber: 3.2 Consensus size: 29
30075452 CACATACCTG
* * * *
30075462 TATATGGCCCACTAGACCC-AATTATATT
1 TATATGGCCCATTAGGCCCAAATCACATT
* *
30075490 CACATGGCCCATTAGGCCCAAATCACATT
1 TATATGGCCCATTAGGCCCAAATCACATT
30075519 TATATGGCCC-TATAGGCCCAAATCAC-TT
1 TATATGGCCCAT-TAGGCCCAAATCACATT
30075547 TATAT
1 TATAT
30075552 TCATGCTCAC
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
28 23 0.44
29 29 0.56
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.29
Consensus pattern (29 bp):
TATATGGCCCATTAGGCCCAAATCACATT
Found at i:30080886 original size:47 final size:47
Alignment explanation
Indices: 30080771--30080925 Score: 165
Period size: 47 Copynumber: 3.3 Consensus size: 47
30080761 AAGACTTGTT
* * * *
30080771 TGGGACATGCATCGGCCT-CGAGATGTAAGCCAGTGTAAGA-CATGTC
1 TGGGACATGCATC-GACTATGAGATATGAGCCAGTGTAAGACCATGTC
* * *
30080817 TAGGACATGCATCGACTATGAGATGAT-AGTCAGTGTAAGACCATGTT
1 TGGGACATGCATCGACTATGAGAT-ATGAGCCAGTGTAAGACCATGTC
* *
30080864 TGGGACATGGCATTGAGT-TGAGATATGAGCCAGTGTAAGACCATGTC
1 TGGGACAT-GCATCGACTATGAGATATGAGCCAGTGTAAGACCATGTC
30080911 TGGGACATAGCATCG
1 TGGGACAT-GCATCG
30080926 GCACCTTACT
Statistics
Matches: 91, Mismatches: 13, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
45 3 0.03
46 31 0.34
47 50 0.55
48 7 0.08
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (47 bp):
TGGGACATGCATCGACTATGAGATATGAGCCAGTGTAAGACCATGTC
Found at i:30092184 original size:40 final size:40
Alignment explanation
Indices: 30092140--30092218 Score: 149
Period size: 40 Copynumber: 2.0 Consensus size: 40
30092130 ATGGATTTAA
30092140 AGCTCTAATTTTGTTATGTGATGATTTTATCAAGTGATTG
1 AGCTCTAATTTTGTTATGTGATGATTTTATCAAGTGATTG
*
30092180 AGCTCTAATTTTGTTATGTGATGATTTTATTAAGTGATT
1 AGCTCTAATTTTGTTATGTGATGATTTTATCAAGTGATT
30092219 TCAATAGAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.25, C:0.06, G:0.19, T:0.49
Consensus pattern (40 bp):
AGCTCTAATTTTGTTATGTGATGATTTTATCAAGTGATTG
Found at i:30098369 original size:19 final size:18
Alignment explanation
Indices: 30098335--30098372 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
30098325 TGTTTGTGAT
30098335 AAATGTTATCTGTTTTGG
1 AAATGTTATCTGTTTTGG
30098353 AAATAGTTA-CTGATTTTGG
1 AAAT-GTTATCTG-TTTTGG
30098372 A
1 A
30098373 TGAATATGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.29, C:0.05, G:0.21, T:0.45
Consensus pattern (18 bp):
AAATGTTATCTGTTTTGG
Found at i:30109613 original size:29 final size:29
Alignment explanation
Indices: 30109579--30109710 Score: 203
Period size: 29 Copynumber: 4.6 Consensus size: 29
30109569 TAATCAACCG
* * *
30109579 CGCACACTTAGTGCCATGTACTTT-AAACT
1 CGCACACTCAGTGCCATGCA-TTTCAAGCT
*
30109608 CGCACACTTAGTGCCATGCATTTCAAGCT
1 CGCACACTCAGTGCCATGCATTTCAAGCT
30109637 CGCACACTCAGTGCCATGCATTTCAAGCT
1 CGCACACTCAGTGCCATGCATTTCAAGCT
*
30109666 CGCACACTCAGTGCCATGCATTTCTAGCT
1 CGCACACTCAGTGCCATGCATTTCAAGCT
30109695 CGCACACTCAGTGCCA
1 CGCACACTCAGTGCCA
30109711 ATCTCTCAAC
Statistics
Matches: 98, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
28 3 0.03
29 95 0.97
ACGTcount: A:0.24, C:0.33, G:0.17, T:0.26
Consensus pattern (29 bp):
CGCACACTCAGTGCCATGCATTTCAAGCT
Found at i:30116294 original size:24 final size:24
Alignment explanation
Indices: 30116249--30116294 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
30116239 CCTTATTAAC
* *
30116249 ATTTCTTATTTCTCTTTTCTTTTA
1 ATTTCTTATTTCTCCTTCCTTTTA
30116273 ATTTCTT-TTTCTCGCTTCCTTT
1 ATTTCTTATTTCTC-CTTCCTTT
30116295 CATTACAAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.09, C:0.22, G:0.02, T:0.67
Consensus pattern (24 bp):
ATTTCTTATTTCTCCTTCCTTTTA
Found at i:30126408 original size:46 final size:46
Alignment explanation
Indices: 30126166--30126523 Score: 277
Period size: 46 Copynumber: 7.6 Consensus size: 46
30126156 GTATAATGCC
* * *
30126166 GATGCCATGTCCCAGACATGGTCTTACACTGGC-T-CATCCATCAAG-T
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACAT-CTTGAGGCT
* *
30126212 CGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATC--GAGGCT
1 -GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-T--ACATCTTGAGGCT
* * * ** * *
30126262 GACGCCATGTCCCAGACATGATCTTACACTAGCTCTCACATATCCATGCC
1 GATG-CATGTCCCAGACATG-TCTTACACTGGCT-T-ACATCTTGAGGCT
* * * *
30126312 GATGCCATGTCCTAGACATGGTCTTACACT-AC--ACATCTCGTA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTTG-AGGCT
*
30126357 GATGCATGTCCCATACATGTCTTACACTGGCTTACATCTTGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTTGAGGCT
30126403 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTTGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTTGAGGCT
* ** * *
30126449 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCT-TACATCTTGAGGCT
*
30126495 GATGCCATGTCCCGGACATGTCTTACACT
1 GATG-CATGTCCCAGACATGTCTTACACT
30126524 AGCTCCCAAA
Statistics
Matches: 263, Mismatches: 31, Indels: 34
0.80 0.09 0.10
Matches are distributed among these distances:
43 10 0.04
44 13 0.05
45 14 0.05
46 98 0.37
47 56 0.21
48 4 0.02
49 34 0.13
50 30 0.11
51 2 0.01
52 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTTGAGGCT
Found at i:30130890 original size:24 final size:22
Alignment explanation
Indices: 30130858--30130903 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
30130848 ATTTTCCCAT
*
30130858 GAAACAGGGTCACACGCCTGTGTG
1 GAAACAGGG--ACACACCTGTGTG
*
30130882 GAAATAGGGACACACCTGTGTG
1 GAAACAGGGACACACCTGTGTG
30130904 CCTTTGGCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 12 0.60
24 8 0.40
ACGTcount: A:0.28, C:0.22, G:0.33, T:0.17
Consensus pattern (22 bp):
GAAACAGGGACACACCTGTGTG
Found at i:30132491 original size:28 final size:28
Alignment explanation
Indices: 30132451--30132506 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
30132441 ATCGATTCAA
30132451 GATAAGCTCTTATTCAGAGGAGGAATAG
1 GATAAGCTCTTATTCAGAGGAGGAATAG
30132479 GATAAGCTCTTATTCAGAGGAGGAATAG
1 GATAAGCTCTTATTCAGAGGAGGAATAG
30132507 ACCCTGTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.11, G:0.29, T:0.25
Consensus pattern (28 bp):
GATAAGCTCTTATTCAGAGGAGGAATAG
Found at i:30134411 original size:46 final size:48
Alignment explanation
Indices: 30134157--30134468 Score: 213
Period size: 46 Copynumber: 6.6 Consensus size: 48
30134147 GGGTATAATA
** * *
30134157 CCGATGCCATGTCCCAGACATGGTCTTACACAGGC-T-CATCCATC-AAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTTGCTTACAT--TTCGAGG
* * * **
30134204 TCAATGCCATGTCCCAGATATGGTCTTACAC-TGAC-TATCAAAATCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTTG-CTTA-C-ATTTCGAGG
* * * * * *
30134253 CGGATGCCATGTCCCAGACCTGGTTTTACACTAGCTCTCACATATCCG-TG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTTGCT-T-ACAT-TTCGAGG
*
30134303 CCGATGCCATGTCCCAGACATGGTCTTACAC-TGAC--ACATCTCGTA-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTTG-CTTACATTTCG-AGG
30134349 CCGATG-CATGTCCCAGACAT-GTCTTACACTTGCTTACATTTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTTGCTTACATTTCGAGG
* * * * *
30134395 CTGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-CATCTCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTTGCT-TACATTTCGAGG
* *
30134441 CCGATGCCATGTCCCATATATGGTCTTA
1 CCGATGCCATGTCCCAGACATGGTCTTA
30134469 TACTGGCTCC
Statistics
Matches: 213, Mismatches: 32, Indels: 39
0.75 0.11 0.14
Matches are distributed among these distances:
44 10 0.05
45 19 0.09
46 64 0.30
47 43 0.20
48 9 0.04
49 30 0.14
50 33 0.15
51 4 0.02
52 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTTGCTTACATTTCGAGG
Found at i:30148022 original size:15 final size:15
Alignment explanation
Indices: 30148002--30148031 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
30147992 CATTATTATT
30148002 CATACATTCAGATCA
1 CATACATTCAGATCA
30148017 CATACATTCAGATCA
1 CATACATTCAGATCA
30148032 TACATTTAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.27, G:0.07, T:0.27
Consensus pattern (15 bp):
CATACATTCAGATCA
Found at i:30148035 original size:13 final size:13
Alignment explanation
Indices: 30148001--30148037 Score: 56
Period size: 15 Copynumber: 2.7 Consensus size: 13
30147991 GCATTATTAT
30148001 TCATACATTCAGA
1 TCATACATTCAGA
30148014 TCACATACATTCAGA
1 T--CATACATTCAGA
30148029 TCATACATT
1 TCATACATT
30148038 TAGCGGTCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 9 0.41
15 13 0.59
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.32
Consensus pattern (13 bp):
TCATACATTCAGA
Found at i:30152906 original size:15 final size:15
Alignment explanation
Indices: 30152882--30152929 Score: 62
Period size: 15 Copynumber: 3.2 Consensus size: 15
30152872 AGGAAACTAA
30152882 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
30152897 ATAGAGAAATCC-AG
1 ATAAAGAAATCCAAG
*
30152911 AATAAAGAAACCCAAG
1 -ATAAAGAAATCCAAG
30152927 ATA
1 ATA
30152930 CGATACTATG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.07
15 24 0.86
16 2 0.07
ACGTcount: A:0.58, C:0.15, G:0.15, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:30159476 original size:15 final size:16
Alignment explanation
Indices: 30159443--30159476 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
30159433 ATCAGGATAT
*
30159443 TACATGTATGTCATCA
1 TACATGTATCTCATCA
30159459 TACATGTATCTC-TCA
1 TACATGTATCTCATCA
30159474 TAC
1 TAC
30159477 TCATTTTACC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (16 bp):
TACATGTATCTCATCA
Found at i:30163840 original size:28 final size:28
Alignment explanation
Indices: 30163800--30163856 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
30163790 ACCTAAAGAG
30163800 TAAGCTCTTTTTTCCCTTTGGTACATTA
1 TAAGCTCTTTTTTCCCTTTGGTACATTA
30163828 TAAGCTCTTTTTTCCCTTTGGTACATTA
1 TAAGCTCTTTTTTCCCTTTGGTACATTA
30163856 T
1 T
30163857 TGTCATACAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.18, C:0.21, G:0.11, T:0.51
Consensus pattern (28 bp):
TAAGCTCTTTTTTCCCTTTGGTACATTA
Found at i:30168052 original size:43 final size:40
Alignment explanation
Indices: 30167994--30168137 Score: 159
Period size: 40 Copynumber: 3.5 Consensus size: 40
30167984 TATTCGGATG
*
30167994 ATATCCGGTTTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGG-CTAAGTCCCGAAGGCATTTGTGC--GTAGTTGCT
* **
30168037 ATACCCAGGCTAAGTCCCGAAGGCATTCATGC-TAG-TGACT
1 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCGTAGTTG-CT
*
30168077 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCG-AGTTGCT
1 ATATCC-GGCTAAGTCCCGAAGGCATTTGTGCGTAGTTGCT
*
30168117 ATATCCGGCTAAATCCCGAAG
1 ATATCCGGCTAAGTCCCGAAG
30168138 ATACTTGGGT
Statistics
Matches: 86, Mismatches: 11, Indels: 12
0.79 0.10 0.11
Matches are distributed among these distances:
39 15 0.17
40 42 0.49
41 2 0.02
43 25 0.29
44 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGCTAAGTCCCGAAGGCATTTGTGCGTAGTTGCT
Found at i:30176882 original size:20 final size:20
Alignment explanation
Indices: 30176831--30176874 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
30176821 GTGTGGTCAC
30176831 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
30176851 ACACGCCCGTGTGGCTTGGG
1 ACACGCCCGTGTGGCTTGGG
30176871 ACAC
1 ACAC
30176875 TTCCGTGTCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.14, C:0.32, G:0.36, T:0.18
Consensus pattern (20 bp):
ACACGCCCGTGTGGCTTGGG
Found at i:30179700 original size:26 final size:26
Alignment explanation
Indices: 30179671--30179734 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 26
30179661 ACAAAGCCTA
* * *
30179671 CTAAATATACATCATCCCGAAGCTTG
1 CTAAATATACACCAGCACGAAGCTTG
* *
30179697 CTAAATATACACCAGGATGAAGCTTG
1 CTAAATATACACCAGCACGAAGCTTG
30179723 CTAAATATACAC
1 CTAAATATACAC
30179735 TGACACAAAG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.39, C:0.23, G:0.12, T:0.25
Consensus pattern (26 bp):
CTAAATATACACCAGCACGAAGCTTG
Found at i:30179745 original size:26 final size:27
Alignment explanation
Indices: 30179660--30179751 Score: 73
Period size: 26 Copynumber: 3.5 Consensus size: 27
30179650 AAAACACTGT
* *
30179660 CACAAAGCCTACTAAATATACA-TCAT
1 CACAAAGCCTGCTAAATATACACTCAG
* * *
30179686 CCCGAAGCTTGCTAAATATACAC-CAG
1 CACAAAGCCTGCTAAATATACACTCAG
* ** * *
30179712 GATGAAGCTTGCTAAATATACACTGA-
1 CACAAAGCCTGCTAAATATACACTCAG
30179738 CACAAAGCCTGCTA
1 CACAAAGCCTGCTA
30179752 TGCCCTAATG
Statistics
Matches: 51, Mismatches: 13, Indels: 4
0.75 0.19 0.06
Matches are distributed among these distances:
26 50 0.98
27 1 0.02
ACGTcount: A:0.39, C:0.26, G:0.13, T:0.22
Consensus pattern (27 bp):
CACAAAGCCTGCTAAATATACACTCAG
Found at i:30188700 original size:11 final size:12
Alignment explanation
Indices: 30188684--30188743 Score: 52
Period size: 11 Copynumber: 4.9 Consensus size: 12
30188674 AATTACCTCA
30188684 TATAAAT-TTTT
1 TATAAATATTTT
30188695 TATAAATAATTTT
1 TATAAAT-ATTTT
*
30188708 TAAAAATAAATTTT
1 TATAAAT--ATTTT
*
30188722 TAT-AATTTTTT
1 TATAAATATTTT
*
30188733 TATAATTATTT
1 TATAAATATTT
30188744 AAGTTTCCAC
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
11 14 0.35
12 5 0.12
13 13 0.32
14 8 0.20
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (12 bp):
TATAAATATTTT
Found at i:30188709 original size:13 final size:14
Alignment explanation
Indices: 30188685--30188726 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
30188675 ATTACCTCAT
30188685 ATAAATTTTTTATAA
1 ATAAA-TTTTTATAA
*
30188700 AT-AATTTTTAAAA
1 ATAAATTTTTATAA
30188713 ATAAATTTTTATAA
1 ATAAATTTTTATAA
30188727 TTTTTTTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 10 0.42
14 12 0.50
15 2 0.08
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
ATAAATTTTTATAA
Found at i:30188849 original size:10 final size:10
Alignment explanation
Indices: 30188834--30188923 Score: 64
Period size: 10 Copynumber: 9.2 Consensus size: 10
30188824 TTTTAACATT
30188834 ATTTTTAATA
1 ATTTTTAATA
30188844 ATTTTTAATA
1 ATTTTTAATA
*
30188854 A-TTTTAACA
1 ATTTTTAATA
*
30188863 ATTTCTT-ATC
1 ATTT-TTAATA
*
30188873 ATTTTAAATA
1 ATTTTTAATA
* *
30188883 CTTTCCT-ATA
1 ATTT-TTAATA
30188893 ATTTTCT-A-A
1 ATTTT-TAATA
*
30188902 ATTTTTTATA
1 ATTTTTAATA
30188912 ATTTTTAATA
1 ATTTTTAATA
30188922 AT
1 AT
30188924 AATTTGAAAA
Statistics
Matches: 62, Mismatches: 11, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
8 1 0.02
9 16 0.26
10 43 0.69
11 2 0.03
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.57
Consensus pattern (10 bp):
ATTTTTAATA
Found at i:30188860 original size:19 final size:19
Alignment explanation
Indices: 30188836--30188923 Score: 72
Period size: 19 Copynumber: 4.5 Consensus size: 19
30188826 TTAACATTAT
30188836 TTTTAATAATTT-TTAATAA
1 TTTTAATAATTTCTT-ATAA
* *
30188855 TTTTAACAATTTCTTATCA
1 TTTTAATAATTTCTTATAA
* *
30188874 TTTTAAATACTTTCCTATAA
1 TTTT-AATAATTTCTTATAA
* *
30188894 TTTT-CTAAATTTTTTATAA
1 TTTTAAT-AATTTCTTATAA
30188913 TTTTTAATAAT
1 -TTTTAATAAT
30188924 AATTTGAAAA
Statistics
Matches: 53, Mismatches: 11, Indels: 9
0.73 0.15 0.12
Matches are distributed among these distances:
18 1 0.02
19 27 0.51
20 24 0.45
21 1 0.02
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.57
Consensus pattern (19 bp):
TTTTAATAATTTCTTATAA
Found at i:30189758 original size:21 final size:21
Alignment explanation
Indices: 30189704--30189758 Score: 51
Period size: 21 Copynumber: 2.6 Consensus size: 21
30189694 ATGCTTTTTG
*
30189704 TTTTTTTTATACTTTTATATAA
1 TTTTTATT-TACTTTTATATAA
*
30189726 TCCTTTCA--TACTTTTATATAA
1 T--TTTTATTTACTTTTATATAA
30189747 TTTTTATTTACT
1 TTTTTATTTACT
30189759 CTAATCTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 9
0.68 0.08 0.24
Matches are distributed among these distances:
19 4 0.15
21 18 0.69
22 1 0.04
24 3 0.12
ACGTcount: A:0.25, C:0.11, G:0.00, T:0.64
Consensus pattern (21 bp):
TTTTTATTTACTTTTATATAA
Found at i:30192804 original size:21 final size:22
Alignment explanation
Indices: 30192764--30192806 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
30192754 AACATTTATA
30192764 CAATTCAAACAAATTTAACATT
1 CAATTCAAACAAATTTAACATT
*
30192786 CAATTCAAATAAA-TTAACATT
1 CAATTCAAACAAATTTAACATT
30192807 TATAATCTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.33
Consensus pattern (22 bp):
CAATTCAAACAAATTTAACATT
Found at i:30197875 original size:8 final size:8
Alignment explanation
Indices: 30197864--30197897 Score: 68
Period size: 8 Copynumber: 4.2 Consensus size: 8
30197854 TATTTTAATC
30197864 ACTCTTAT
1 ACTCTTAT
30197872 ACTCTTAT
1 ACTCTTAT
30197880 ACTCTTAT
1 ACTCTTAT
30197888 ACTCTTAT
1 ACTCTTAT
30197896 AC
1 AC
30197898 CATGCTCAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.00, T:0.47
Consensus pattern (8 bp):
ACTCTTAT
Found at i:30201364 original size:6 final size:6
Alignment explanation
Indices: 30201353--30201539 Score: 172
Period size: 6 Copynumber: 30.8 Consensus size: 6
30201343 AACCAAAATG
*
30201353 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
30201401 AGTAA-C AGAATC AGAATC AGAATC AGAATC AGAATT AG-GTGAC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC AGAATC AGAAT--C AGAATC
* *
30201450 AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC AGTATT AGTAA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC AG-AATC
* * *
30201498 AGAATC AGAATC AAAATT ACGTGA-C AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC AGAAT
30201540 GTGAATGCAA
Statistics
Matches: 149, Mismatches: 16, Indels: 32
0.76 0.08 0.16
Matches are distributed among these distances:
5 11 0.07
6 126 0.85
7 9 0.06
8 3 0.02
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:30201366 original size:30 final size:29
Alignment explanation
Indices: 30201332--30201510 Score: 166
Period size: 30 Copynumber: 5.9 Consensus size: 29
30201322 AAGAAACATT
* * *
30201332 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
*
30201362 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
30201392 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
* * *
30201422 ATCAGAATCAG-AATTAG-GTGACAGAATCAGA
1 ATCAGAAT-TGTAA-CAGAAT--CAGAATCAGA
*
30201453 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
*
30201483 ATCAGTATTAGTAACAGAATCAGAATCA
1 ATCAGAATT-GTAACAGAATCAGAATCA
30201511 AAATTACGTG
Statistics
Matches: 126, Mismatches: 12, Indels: 22
0.79 0.08 0.14
Matches are distributed among these distances:
29 4 0.03
30 92 0.73
31 27 0.21
32 3 0.02
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:30201475 original size:55 final size:55
Alignment explanation
Indices: 30201353--30201539 Score: 202
Period size: 55 Copynumber: 3.3 Consensus size: 55
30201343 AACCAAAATG
* *
30201353 AGAATCAGAATCAGAATCAGTAA-CAG-AATCAGAATCAGAATCAATATTAGTAACAG-AATC
1 AGAATCAGAATCAGAATCAG-AATTAGTAA-CAGAATCAGAATCAA-A--A-TCAC-GTAA-C
* *
30201413 AGAATCAGAATCAGAATCAGAATTAGGTGACAGAATCAGAATCAGAATCA-GTAAC
1 AGAATCAGAATCAGAATCAGAATTA-GTAACAGAATCAGAATCAAAATCACGTAAC
* * *
30201468 AGAATCAGAATCAGAATCAGTATTAGTAACAGAATCAGAATCAAAATTACGTGAC
1 AGAATCAGAATCAGAATCAGAATTAGTAACAGAATCAGAATCAAAATCACGTAAC
30201523 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
30201540 GTGAATGCAA
Statistics
Matches: 113, Mismatches: 9, Indels: 15
0.82 0.07 0.11
Matches are distributed among these distances:
54 21 0.19
55 47 0.42
56 2 0.02
57 2 0.02
58 1 0.01
59 2 0.02
60 22 0.19
61 15 0.13
62 1 0.01
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (55 bp):
AGAATCAGAATCAGAATCAGAATTAGTAACAGAATCAGAATCAAAATCACGTAAC
Found at i:30201705 original size:27 final size:27
Alignment explanation
Indices: 30201657--30201730 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
30201647 AGCATGGCTG
** * *
30201657 CCAGAA-CAGATAACCTGACAGAGTCA
1 CCAGAATCAGATAATGTGGCAGAGCCA
*
30201683 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
30201710 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
30201731 AACCCACCTA
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.82
28 2 0.05
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:30201737 original size:27 final size:27
Alignment explanation
Indices: 30201681--30201738 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
30201671 CTGACAGAGT
* * *
30201681 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
30201708 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
30201735 CACC
1 CACC
30201739 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:30201943 original size:22 final size:22
Alignment explanation
Indices: 30201895--30201953 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
30201885 GTAAATACGT
*
30201895 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
30201917 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
30201939 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
30201954 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:30202120 original size:27 final size:26
Alignment explanation
Indices: 30202041--30202123 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 26
30202031 TCTATCGGTC
* * *
30202041 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
30202067 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
30202094 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
30202121 AAC
1 AAC
30202124 GCTTCCTCCG
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
26 8 0.16
27 43 0.84
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:30202368 original size:54 final size:54
Alignment explanation
Indices: 30202310--30202423 Score: 138
Period size: 54 Copynumber: 2.1 Consensus size: 54
30202300 TTTAACACCC
*
30202310 TAGGGGCAAAATGGTAATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTA
1 TAGGGGCAAAATGGTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTA
* *** * * * * *
30202364 TAGGGGTATTTTGGTAATTCTATCCTATAAGGGTATTTTAGTAATTCTACCCTA
1 TAGGGGCAAAATGGTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTA
30202418 TAGGGG
1 TAGGGG
30202424 TATTTCGAAA
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (54 bp):
TAGGGGCAAAATGGTAATTCTACCCCACAAGGGTATCTCAGTAATTCTACCCTA
Found at i:30202370 original size:27 final size:27
Alignment explanation
Indices: 30202340--30202463 Score: 160
Period size: 27 Copynumber: 4.6 Consensus size: 27
30202330 TACCCCACAA
*
30202340 GGGTATCTCAGTAATTCTACCCTATAG
1 GGGTATTTCAGTAATTCTACCCTATAG
** * *
30202367 GGGTATTTTGGTAATTCTATCCTATAA
1 GGGTATTTCAGTAATTCTACCCTATAG
*
30202394 GGGTATTTTAGTAATTCTACCCTATAG
1 GGGTATTTCAGTAATTCTACCCTATAG
* *
30202421 GGGTATTTC-GAAAATTCTACCCTACAG
1 GGGTATTTCAG-TAATTCTACCCTATAG
30202448 GGGTATTTCAGTAATT
1 GGGTATTTCAGTAATT
30202464 TCACAATCAA
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 81 0.98
28 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.19, T:0.38
Consensus pattern (27 bp):
GGGTATTTCAGTAATTCTACCCTATAG
Found at i:30202424 original size:54 final size:54
Alignment explanation
Indices: 30202325--30202463 Score: 188
Period size: 54 Copynumber: 2.6 Consensus size: 54
30202315 GCAAAATGGT
* * * * **
30202325 AATTTTACCCCACAAGGGTATCTCAGTAATTCTACCCTATAGGGGTATTTTGGT
1 AATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGAA
* * *
30202379 AATTCTATCCTATAAGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTCGAA
1 AATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGAA
*
30202433 AATTCTACCCTACAGGGGTATTTCAGTAATT
1 AATTCTACCCTACAAGGGTATTTCAGTAATT
30202464 TCACAATCAA
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 72 1.00
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (54 bp):
AATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTCGAA
Found at i:30202758 original size:81 final size:81
Alignment explanation
Indices: 30202468--30202773 Score: 323
Period size: 81 Copynumber: 3.8 Consensus size: 81
30202458 GTAATTTCAC
* * * * * *
30202468 AATCAAGGGTAAAACGATAATTCTGTAAATCGAGGGTAAAACGATAATTCTGT-AAACT-GAGGG
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATT-T-TAAAAATCGAGGG
* *
30202531 TAAACCAATAATTCTGTA
64 TAAAACAGTAATTCTGTA
* * ** * * * *
30202549 AATCAAGGGTAAAACAGTAATTTTACAAATCGAGGGTAAAACGGTAATTCTATAAATCGAAGGTA
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTAAAAATCGAGGGTA
30202614 AAACAGTAATTCTGTA
66 AAACAGTAATTCTGTA
* *
30202630 AA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTAAAATAGTAATTTTAAAAATCGAGGGT
1 AATC-GAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTAAAAATCGAGGGT
*
30202694 AAAACGGTAATTCTGTA
65 AAAACAGTAATTCTGTA
* *** * *
30202711 AATCGAGGGTAAAACGGTAATTCTGTAAATCG-GGAGTACTTTGGTAATTTTACAAGTCGAGGG
1 AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGG-GTAAAATGGTAATTTTAAAAATCGAGGG
30202774 CATTTCAGTA
Statistics
Matches: 189, Mismatches: 31, Indels: 10
0.82 0.13 0.04
Matches are distributed among these distances:
79 1 0.01
80 6 0.03
81 181 0.96
82 1 0.01
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.27
Consensus pattern (81 bp):
AATCGAGGGTAAAACGGTAATTTTGTAAATCGAGGGTAAAATGGTAATTTTAAAAATCGAGGGTA
AAACAGTAATTCTGTA
Found at i:30202759 original size:27 final size:27
Alignment explanation
Indices: 30202468--30202742 Score: 329
Period size: 27 Copynumber: 10.2 Consensus size: 27
30202458 GTAATTTCAC
* *
30202468 AATCAAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
30202495 AATCGAGGGTAAAACGATAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* **
30202522 AA-CTGAGGGTAAACCAATAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * **
30202549 AATCAAGGGTAAAACAGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
30202576 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
30202603 AATCGAAGGTAAAACAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
30202630 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
** * **
30202657 AATCGAGGGTAAAATAGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
30202684 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
30202711 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
30202738 AATCG
1 AATCG
30202743 GGAGTACTTT
Statistics
Matches: 216, Mismatches: 28, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
26 2 0.01
27 212 0.98
28 2 0.01
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:30206583 original size:21 final size:23
Alignment explanation
Indices: 30206558--30206605 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
30206548 GGACTAAACC
* *
30206558 GAAAACTT-TGGAAAGTTTT-AG
1 GAAAACTTAGGGAAAATTTTCAG
30206579 GAAAACTTAGGGAAAATTTTCAG
1 GAAAACTTAGGGAAAATTTTCAG
30206602 GAAA
1 GAAA
30206606 TAGGGTCACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 8 0.35
22 9 0.39
23 6 0.26
ACGTcount: A:0.44, C:0.06, G:0.23, T:0.27
Consensus pattern (23 bp):
GAAAACTTAGGGAAAATTTTCAG
Found at i:30208673 original size:43 final size:42
Alignment explanation
Indices: 30208605--30208726 Score: 163
Period size: 43 Copynumber: 2.9 Consensus size: 42
30208595 ACATGTACCG
* * * *
30208605 CATCCATTATGAACTCGGACGACTCAACGAGCTCGGATGCTCT
1 CATCCATAATGAACTCAGACCACTCAACGAGCTCGGATGC-CA
30208648 CATCCATAATGAACTCAGACCACTCAACGAGCTCGGATGCCA
1 CATCCATAATGAACTCAGACCACTCAACGAGCTCGGATGCCA
** * *
30208690 CATATATCATGAACTCAGACCACTCAACGAGTTCGGA
1 CATCCATAATGAACTCAGACCACTCAACGAGCTCGGA
30208727 CTTCTTTATT
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
42 34 0.48
43 37 0.52
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.20
Consensus pattern (42 bp):
CATCCATAATGAACTCAGACCACTCAACGAGCTCGGATGCCA
Found at i:30208715 original size:42 final size:43
Alignment explanation
Indices: 30208613--30208726 Score: 158
Period size: 42 Copynumber: 2.7 Consensus size: 43
30208603 CGCATCCATT
* * * *
30208613 ATGAACTCGGACGACTCAACGAGCTCGGATGCTCTCATCCATA
1 ATGAACTCAGACCACTCAACGAGCTCGGATGCTCACATACATA
* *
30208656 ATGAACTCAGACCACTCAACGAGCTCGGATGC-CACATATATC
1 ATGAACTCAGACCACTCAACGAGCTCGGATGCTCACATACATA
*
30208698 ATGAACTCAGACCACTCAACGAGTTCGGA
1 ATGAACTCAGACCACTCAACGAGCTCGGA
30208727 CTTCTTTATT
Statistics
Matches: 64, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
42 34 0.53
43 30 0.47
ACGTcount: A:0.32, C:0.30, G:0.19, T:0.19
Consensus pattern (43 bp):
ATGAACTCAGACCACTCAACGAGCTCGGATGCTCACATACATA
Found at i:30211853 original size:21 final size:21
Alignment explanation
Indices: 30211829--30211876 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
30211819 ATATAAATGA
30211829 ATTT-AATCATCAATTTAATTC
1 ATTTCAATC-TCAATTTAATTC
*
30211850 ATTTCATTCTCAATTTAATTC
1 ATTTCAATCTCAATTTAATTC
*
30211871 AATTCA
1 ATTTCA
30211877 CATTCTAGGC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 21 0.88
22 3 0.12
ACGTcount: A:0.35, C:0.17, G:0.00, T:0.48
Consensus pattern (21 bp):
ATTTCAATCTCAATTTAATTC
Found at i:30216102 original size:29 final size:29
Alignment explanation
Indices: 30216064--30216170 Score: 126
Period size: 29 Copynumber: 3.7 Consensus size: 29
30216054 GTTAAAATAG
*
30216064 AAGCCTTTGTGGTAATCTCTGTTATAAGA
1 AAGCCTTTGTGGCAATCTCTGTTATAAGA
** * *
30216093 AAGCGC-TTGTGGTGATTTCTATTATAAGA
1 AAGC-CTTTGTGGCAATCTCTGTTATAAGA
* * *
30216122 AAGCCTTTGTGGCAATATCTGTTAAAAGG
1 AAGCCTTTGTGGCAATCTCTGTTATAAGA
30216151 AAGCCTTTGTGGCAATCTCT
1 AAGCCTTTGTGGCAATCTCT
30216171 ACTGAAAGGA
Statistics
Matches: 66, Mismatches: 10, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
28 1 0.02
29 64 0.97
30 1 0.02
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (29 bp):
AAGCCTTTGTGGCAATCTCTGTTATAAGA
Found at i:30216178 original size:29 final size:29
Alignment explanation
Indices: 30216122--30216193 Score: 90
Period size: 29 Copynumber: 2.4 Consensus size: 29
30216112 TATTATAAGA
**
30216122 AAGCCTTTGTGGCAATATCTGTTAAAAGG
1 AAGCCTTTGTGGCAATATCTACTAAAAGG
* *
30216151 AAGCCTTTGTGGCAATCTCTACTGAAAGG
1 AAGCCTTTGTGGCAATATCTACTAAAAGG
*
30216180 AATGCCTCTGTGGC
1 AA-GCCTTTGTGGC
30216194 GCAATAAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
29 27 0.73
30 10 0.27
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.29
Consensus pattern (29 bp):
AAGCCTTTGTGGCAATATCTACTAAAAGG
Found at i:30218397 original size:48 final size:48
Alignment explanation
Indices: 30218340--30218470 Score: 212
Period size: 48 Copynumber: 2.8 Consensus size: 48
30218330 CTTGCACAAT
*
30218340 AAGTACCTATACCATGGCCTGAAGCCAAATCAAGGTAACTTATCTCCG
1 AAGTACCTATACCATGGCCTGAAGCCAAATCAAGGTAACTCATCTCCG
* *
30218388 GAGTACCTATACCATGGCCTGAAGCCAAATCAAGGTGACTCATCTCCG
1 AAGTACCTATACCATGGCCTGAAGCCAAATCAAGGTAACTCATCTCCG
*
30218436 AAATACCTATACCATGG-C-GAAGCCAAATCAAGGTA
1 AAGTACCTATACCATGGCCTGAAGCCAAATCAAGGTA
30218471 TGACTCGCAC
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
46 16 0.21
47 1 0.01
48 60 0.78
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.21
Consensus pattern (48 bp):
AAGTACCTATACCATGGCCTGAAGCCAAATCAAGGTAACTCATCTCCG
Found at i:30218536 original size:47 final size:49
Alignment explanation
Indices: 30218453--30218549 Score: 128
Period size: 47 Copynumber: 2.0 Consensus size: 49
30218443 TATACCATGG
*
30218453 CGAAGCCAAATCAAGGTATGACTCGCACCCGAAGTGC-AGATATCATAGCC
1 CGAAGCCAAATCAAGGTA-GACTCGCACACGAAGTGCTA-ATATCATAGCC
* *
30218503 CGAAGCCAAATCAATG-A-ACTCGCACACTAAGTGCTAATATCATAGCC
1 CGAAGCCAAATCAAGGTAGACTCGCACACGAAGTGCTAATATCATAGCC
30218550 GATTCTTTGT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
47 26 0.60
48 1 0.02
49 1 0.02
50 15 0.35
ACGTcount: A:0.36, C:0.28, G:0.19, T:0.18
Consensus pattern (49 bp):
CGAAGCCAAATCAAGGTAGACTCGCACACGAAGTGCTAATATCATAGCC
Found at i:30223459 original size:43 final size:43
Alignment explanation
Indices: 30223395--30223592 Score: 229
Period size: 43 Copynumber: 4.6 Consensus size: 43
30223385 ATGCCACTAT
* *
30223395 AGAACATGACCTTTAGCGGTGCTTTTCTCACAAACGCCGCTAA
1 AGAACATGACCTTTAGCGGTGCTTTTCCCACAAACACCGCTAA
* * * *
30223438 AGAACATGACCTTTAGTGGTGC-TTTCCCATAAACGCTGCTAA
1 AGAACATGACCTTTAGCGGTGCTTTTCCCACAAACACCGCTAA
* *** * *
30223480 AGAATATGACCTTTAGCGACAC-TTTCCCAACAAACAACTCTAA
1 AGAACATGACCTTTAGCGGTGCTTTTCCC-ACAAACACCGCTAA
* * * *
30223523 AGAACATGACCTTTAGTGGCGCTTTCCCCACAAACATCGCTAA
1 AGAACATGACCTTTAGCGGTGCTTTTCCCACAAACACCGCTAA
30223566 AGAACATGACCTTTAGCGGTGCTTTTC
1 AGAACATGACCTTTAGCGGTGCTTTTC
30223593 TCAAAAACCT
Statistics
Matches: 129, Mismatches: 24, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
42 40 0.31
43 84 0.65
44 5 0.04
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (43 bp):
AGAACATGACCTTTAGCGGTGCTTTTCCCACAAACACCGCTAA
Found at i:30244044 original size:71 final size:72
Alignment explanation
Indices: 30243965--30244171 Score: 222
Period size: 71 Copynumber: 2.9 Consensus size: 72
30243955 GAATAAATGG
*
30243965 TTCCACTTAATATCAAAACTCAATAAGTTGAACTAAATTAACCTTTTTAAAAATTCATAATTAAA
1 TTCCACTTAATATCAAAACTCAATAAATTGAACTAAATTAACCTTTTTAAAAATTCATAATTAAA
*
30244030 CAAAC-T
66 CAAACAA
** ** * ** * * * *
30244036 TTTTACTTAATATCAAATTTCAAAAAATCAAACTAGATTAAGC-TTTTGAAAATGT-ATAACTAA
1 TTCCACTTAATATCAAAACTCAATAAATTGAACTAAATTAACCTTTTTAAAAAT-TCATAATTAA
*
30244099 ATAAACAA
65 ACAAACAA
* * **
30244107 TTCCACTTAATATCAAAACTTAATAAATTGAAGTAAATTAACCTTTTTAAAAACACATAATTAAA
1 TTCCACTTAATATCAAAACTCAATAAATTGAACTAAATTAACCTTTTTAAAAATTCATAATTAAA
30244172 TAAATGATTT
Statistics
Matches: 103, Mismatches: 29, Indels: 7
0.74 0.21 0.05
Matches are distributed among these distances:
70 21 0.20
71 66 0.64
72 16 0.16
ACGTcount: A:0.48, C:0.14, G:0.04, T:0.34
Consensus pattern (72 bp):
TTCCACTTAATATCAAAACTCAATAAATTGAACTAAATTAACCTTTTTAAAAATTCATAATTAAA
CAAACAA
Found at i:30246178 original size:22 final size:22
Alignment explanation
Indices: 30246153--30246198 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
30246143 AACATATAAT
*
30246153 TAAATTAA-TCAAAATTTACAAA
1 TAAA-TAATTCAAAAATTACAAA
*
30246175 TAAATAATTCAAAAATTGCAAA
1 TAAATAATTCAAAAATTACAAA
30246197 TA
1 TA
30246199 GCAGCACAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.14
22 18 0.86
ACGTcount: A:0.59, C:0.09, G:0.02, T:0.30
Consensus pattern (22 bp):
TAAATAATTCAAAAATTACAAA
Found at i:30251253 original size:11 final size:11
Alignment explanation
Indices: 30251237--30251275 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
30251227 GAAAGAGAGG
30251237 TTGATTTTTGC
1 TTGATTTTTGC
*
30251248 TTGATTTTAGC
1 TTGATTTTTGC
*
30251259 TTGATTCTTGC
1 TTGATTTTTGC
30251270 TTGATT
1 TTGATT
30251276 GAAGCAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.13, C:0.10, G:0.18, T:0.59
Consensus pattern (11 bp):
TTGATTTTTGC
Found at i:30252126 original size:35 final size:35
Alignment explanation
Indices: 30252041--30252126 Score: 93
Period size: 35 Copynumber: 2.5 Consensus size: 35
30252031 ATACTCAGTC
* * *
30252041 AGATACAGATACAAATTCGCGCTTATGCCCATTAA
1 AGATACAGATACAGATTCGCGCCTAAGCCCATTAA
* * *
30252076 AGATACAGATGCAGATTCGGGCCTAAGCCCATCTCA
1 AGATACAGATACAGATTCGCGCCTAAGCCCAT-TAA
*
30252112 A-ATATAGATACAGAT
1 AGATACAGATACAGAT
30252127 GTACAATCAG
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
35 39 0.93
36 3 0.07
ACGTcount: A:0.37, C:0.22, G:0.17, T:0.23
Consensus pattern (35 bp):
AGATACAGATACAGATTCGCGCCTAAGCCCATTAA
Found at i:30261385 original size:20 final size:21
Alignment explanation
Indices: 30261346--30261390 Score: 58
Period size: 19 Copynumber: 2.2 Consensus size: 21
30261336 CCAATCATTA
*
30261346 AAACTTTTTATTTTTCCCC-T
1 AAACTTTTTACTTTTCCCCTT
30261366 AAAC-TTTTACTTTTCACCCTT
1 AAACTTTTTACTTTTC-CCCTT
30261387 AAAC
1 AAAC
30261391 CCCAAATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 10 0.45
20 7 0.32
21 5 0.23
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.47
Consensus pattern (21 bp):
AAACTTTTTACTTTTCCCCTT
Found at i:30264080 original size:29 final size:29
Alignment explanation
Indices: 30264017--30264084 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
30264007 TAATCAACCG
30264017 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
30264046 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
30264075 CGCACACTTA
1 CGCACACTTA
30264085 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:30264225 original size:29 final size:29
Alignment explanation
Indices: 30264186--30264264 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 29
30264176 CTTAATAATC
* *
30264186 AACCGCGCACACTTAGTGCCATGCACTTTA
1 AACC-CGCACACTTAGTGCCATACAATTTA
* **
30264216 AACTCGCACACTTAGTGCTGTACAATTTA
1 AACCCGCACACTTAGTGCCATACAATTTA
30264245 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
30264265 ATCTCATGAC
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
29 38 0.93
30 3 0.07
ACGTcount: A:0.29, C:0.32, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATACAATTTA
Found at i:30264258 original size:174 final size:173
Alignment explanation
Indices: 30263907--30264258 Score: 598
Period size: 174 Copynumber: 2.0 Consensus size: 173
30263897 AACTCAAGGT
* *
30263907 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
30263972 GAAAATATATATTGGGTTGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGCA
66 GAAAATATATATTGGGTTGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGCA
* ***
30264037 CTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 CTTTAAACTCACACACTTAGTGCCATACATTTCAAACCCGCAC
30264080 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
30264145 GAAAATATATATTGGGTTTGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGG-TTGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
* **
30264210 ACTTTAAACTCGCACACTTAGTGCTGTACAATTT-AAACCCGCAC
130 ACTTTAAACTCACACACTTAGTGCCATAC-ATTTCAAACCCGCAC
30264254 ACTTA
1 ACTTA
30264259 GTGCCAATCT
Statistics
Matches: 168, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
173 79 0.47
174 85 0.51
175 4 0.02
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (173 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGCA
CTTTAAACTCACACACTTAGTGCCATACATTTCAAACCCGCAC
Found at i:30272246 original size:29 final size:29
Alignment explanation
Indices: 30272183--30272250 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
30272173 TAATCAACCA
30272183 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
30272212 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
30272241 CGCACACTTA
1 CGCACACTTA
30272251 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:30272391 original size:29 final size:30
Alignment explanation
Indices: 30272352--30272430 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
30272342 CTTAATAATC
30272352 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
30272382 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
30272411 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
30272431 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:30278728 original size:68 final size:64
Alignment explanation
Indices: 30278611--30278777 Score: 151
Period size: 68 Copynumber: 2.5 Consensus size: 64
30278601 ATATAGATAG
* * * * *
30278611 TATGTAGCTAGGTCACATGTATGGTGCTAAGTGCACATAATGTGTACAAGGGAGCTACAAGACAT
1 TATGTAGCTAGGTCACATGGATGATACTAAGTGCACACAATGTGTACAAGAGAGCTAC--GACA-
30278676 TA
63 TA
* * * * *
30278678 TGATGTAGCTAGGTCACATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGCTACGAGAT
1 T-ATGTAGCTAGGTCACATGGATGATACTAAGTGCACACAATGT-GTACAAGAGAGCTACGACAT
30278742 A
64 A
*
30278743 TATGTAGCTAGGTCGCAT-G-TGTAGTACTAAGTGCA
1 TATGTAGCTAGGTCACATGGATG-A-TACTAAGTGCA
30278778 GGCTATTATG
Statistics
Matches: 83, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
62 2 0.02
63 2 0.02
64 25 0.30
65 3 0.04
66 3 0.04
67 1 0.01
68 46 0.55
69 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (64 bp):
TATGTAGCTAGGTCACATGGATGATACTAAGTGCACACAATGTGTACAAGAGAGCTACGACATA
Found at i:30278943 original size:49 final size:50
Alignment explanation
Indices: 30278751--30278948 Score: 227
Period size: 50 Copynumber: 4.0 Consensus size: 50
30278741 TATATGTAGC
* * * *
30278751 TAGGTCGCATGTGTAGTACTAAGTGCAGGCTATTATGCGTACCCGATAACT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAA-T
* * * * * * *
30278802 TCGATCACGTGTGTAGTACTAAGTGCAGGCTACAACGTGTATCAGATAGT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAAT
* ** *
30278852 TAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCGGATAAT
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAAT
* *
30278902 T-GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATA
30278949 GTTTGGCTAC
Statistics
Matches: 123, Mismatches: 24, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
49 40 0.33
50 45 0.37
51 38 0.31
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (50 bp):
TAGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAAT
Found at i:30280883 original size:39 final size:39
Alignment explanation
Indices: 30280824--30281101 Score: 418
Period size: 39 Copynumber: 7.2 Consensus size: 39
30280814 AAGACACTGA
*
30280824 AAATATATCCGGGCTAAAGTCCGGCAGGCTTCGTGCTGG
1 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
30280863 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGA
1 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
30280902 AAATATATCCGGGCTAAAGTCCCGCA-GCTTCGTGCTGG
1 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
30280940 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
30280979 AAATGTATCCAGACTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
30281018 AAA-CTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* * *
30281056 AAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTGCT-G
1 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
30281094 ATAATATA
1 A-AATATA
30281102 ATTTCGGGTT
Statistics
Matches: 217, Mismatches: 19, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
38 72 0.33
39 145 0.67
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.23
Consensus pattern (39 bp):
AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:30280959 original size:77 final size:78
Alignment explanation
Indices: 30280820--30281101 Score: 426
Period size: 77 Copynumber: 3.6 Consensus size: 78
30280810 ATGCAAGACA
* * *
30280820 CTGAAAATATATCCGGGCTAAAGTCCGGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCC
1 CTGAAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCC
30280885 CGCAGGCTTCGTG
66 CGCAGGCTTCGTG
30280898 CTGAAAATATATCCGGGCTAAAGTCCCGCA-GCTTCGTGCTGGAAATATATCCGGGCCAAAGTCC
1 CTGAAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCC
30280962 CGCAGGCTTCGTG
66 CGCAGGCTTCGTG
* * * * *
30280975 CTGGAAATGTATCCAGACTAAAGTCCCGCAGGCTTCGTGCTGGAAA-CTATCCGGGCCAAAGTCC
1 CTGAAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCC
30281039 CGCAGGCTTCGTG
66 CGCAGGCTTCGTG
* * * *
30281052 CTGGAAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTGCT-GATAATATA
1 CTGAAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGA-AATATA
30281102 ATTTCGGGTT
Statistics
Matches: 188, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
76 2 0.01
77 140 0.74
78 46 0.24
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.23
Consensus pattern (78 bp):
CTGAAAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATATATCCGGGCCAAAGTCC
CGCAGGCTTCGTG
Found at i:30281048 original size:116 final size:116
Alignment explanation
Indices: 30280824--30281093 Score: 434
Period size: 116 Copynumber: 2.3 Consensus size: 116
30280814 AAGACACTGA
* * *
30280824 AAATATATCCGGGCTAAAGTCCGGCAGGCTTCGTGCTGGAAATGTATCCGGGCTAAAGTCCCGCA
1 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCAGACTAAAGTCCCGCA
*
30280889 GGCTTCGTGCTGAAAATATATCCGGGCTAAAGTCCCGCAGCTTCGTGCTGG
66 GGCTTCGTGCTGAAAATATATCCGGGCCAAAGTCCCGCAGCTTCGTGCTGG
*
30280940 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCAGACTAAAGTCCCGCA
1 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCAGACTAAAGTCCCGCA
* *
30281005 GGCTTCGTGCTGGAAA-CTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
66 GGCTTCGTGCTGAAAATATATCCGGGCCAAAGTCCCGCA-GCTTCGTGCTGG
* * *
30281056 AAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTGCTG
1 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
30281094 ATAATATAAT
Statistics
Matches: 142, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
115 20 0.14
116 122 0.86
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (116 bp):
AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGGAAATGTATCCAGACTAAAGTCCCGCA
GGCTTCGTGCTGAAAATATATCCGGGCCAAAGTCCCGCAGCTTCGTGCTGG
Found at i:30285571 original size:39 final size:39
Alignment explanation
Indices: 30285517--30285749 Score: 403
Period size: 39 Copynumber: 6.0 Consensus size: 39
30285507 AAGACACTGA
*
30285517 AAATGTATCCGGGCTAAAGTCCCGCAGGCATCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
30285556 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
30285595 AAATATATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
30285634 AAATATATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
*
30285673 AAATGTATCCGGGCCAAAGTCCCGCAGGCTTCGTGCTGG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
* *
30285712 AAATGTATCCGGGTTAAAGTCCCGCAGGCTTTGTGCTG
1 AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTG
30285750 ATAATATAAT
Statistics
Matches: 187, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 187 1.00
ACGTcount: A:0.22, C:0.26, G:0.30, T:0.23
Consensus pattern (39 bp):
AAATGTATCCGGGCTAAAGTCCCGCAGGCTTCGTGCTGG
Found at i:30295829 original size:30 final size:33
Alignment explanation
Indices: 30295785--30295848 Score: 89
Period size: 30 Copynumber: 2.0 Consensus size: 33
30295775 TTATTTTATG
* *
30295785 TATATACTTCCTTTTAAATTTATTTAT-ATTTA
1 TATATACTTCCTTTTAAATCTATATATAATTTA
30295817 TATATA-TT-CTTTTAAATCTATATATAATTTA
1 TATATACTTCCTTTTAAATCTATATATAATTTA
30295848 T
1 T
30295849 CTTTTAAGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 15 0.52
31 8 0.28
32 6 0.21
ACGTcount: A:0.34, C:0.08, G:0.00, T:0.58
Consensus pattern (33 bp):
TATATACTTCCTTTTAAATCTATATATAATTTA
Found at i:30300031 original size:12 final size:12
Alignment explanation
Indices: 30300014--30300047 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
30300004 ATACAAAAGG
30300014 AGATGCAAGAAC
1 AGATGCAAGAAC
*
30300026 AGATGCAAGCAC
1 AGATGCAAGAAC
*
30300038 AAATGCAAGA
1 AGATGCAAGA
30300048 GCCATTGGCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.50, C:0.18, G:0.24, T:0.09
Consensus pattern (12 bp):
AGATGCAAGAAC
Found at i:30300343 original size:83 final size:84
Alignment explanation
Indices: 30300187--30300346 Score: 216
Period size: 83 Copynumber: 1.9 Consensus size: 84
30300177 TGAATGATAA
* * * *
30300187 TGAAGATCCTCTCTACACCCCTAGTTTCACCCTGAAAAATGCTTAAACACAACCCGAGATGCACA
1 TGAAAATCCTCTCTACACCCCTAGTTTCACCCTCAAAAATGCTCAAACACAACCCGAGATCCACA
**
30300252 TGCAAAGGCCATCTGTTAC
66 CACAAAGGCCATCTGTTAC
* *
30300271 TGAAAATCCTCTCTAC-CCCCTGGTTTCACCC-CAACAAATGCTCAAACGCAACCCGAGATCCAC
1 TGAAAATCCTCTCTACACCCCTAGTTTCACCCTCAA-AAATGCTCAAACACAACCCGAGATCCAC
*
30300334 ACACGAAGGCCAT
65 ACACAAAGGCCAT
30300347 ACATTACAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
82 2 0.03
83 49 0.74
84 15 0.23
ACGTcount: A:0.32, C:0.34, G:0.14, T:0.20
Consensus pattern (84 bp):
TGAAAATCCTCTCTACACCCCTAGTTTCACCCTCAAAAATGCTCAAACACAACCCGAGATCCACA
CACAAAGGCCATCTGTTAC
Found at i:30308559 original size:93 final size:92
Alignment explanation
Indices: 30308407--30308762 Score: 332
Period size: 93 Copynumber: 3.8 Consensus size: 92
30308397 AAGCAATAAG
* * * * * * * *
30308407 TCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAAGATAGCGAATCTTATTTCTCTGAAGTTGT
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGA-T---CATAGCAAACCTTATCTCCCTGAAGTTGT
30308472 AGTGGAACAGATTGAAGCTATAAATAAACAGA
62 AGTGGAACAGATTGAAGCTATAAATAAA-AGA
* *
30308504 TCTTATCTCTCTGAAGTTACAGTAGAGCAGATCATAGCAAACCTTATCTCCCTGAAGTTGTAGTA
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAAACCTTATCTCCCTGAAGTTGTAGTG
* *
30308569 GAGCAGGTTGAAG---T---T-AAAG-
66 GAACAGATTGAAGCTATAAATAAAAGA
* * ** * ** *
30308588 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAGATAGCGAGTCTTATTTCCCTGAAGTTGT
1 TCTTATCTCTCTGAAGTTGCAGTAGAGC--A--GATCATAGCAAACCTTATCTCCCTGAAGTTGT
30308653 AGTGGAACAGATTGAAGCTATAAATAAATAGA
62 AGTGGAACAGATTGAAGCTATAAATAAA-AGA
* * * *
30308685 TCTTATCTCTCTGAAGTTGTAGTAGAGCAGATCATAGCAAACCTTATCTCCTTGAAATTGTAGAG
1 TCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAAACCTTATCTCCCTGAAGTTGTAGTG
* *
30308750 GAGCAGACTGAAG
66 GAACAGATTGAAG
30308763 ATAGCAGATC
Statistics
Matches: 208, Mismatches: 38, Indels: 30
0.75 0.14 0.11
Matches are distributed among these distances:
84 25 0.12
85 2 0.01
86 3 0.01
87 1 0.00
88 40 0.19
90 1 0.00
91 1 0.00
93 76 0.37
94 1 0.00
95 3 0.01
96 3 0.01
97 52 0.25
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.29
Consensus pattern (92 bp):
TCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCATAGCAAACCTTATCTCCCTGAAGTTGTAGTG
GAACAGATTGAAGCTATAAATAAAAGA
Found at i:30308639 original size:181 final size:182
Alignment explanation
Indices: 30308365--30308801 Score: 646
Period size: 181 Copynumber: 2.4 Consensus size: 182
30308355 ATGGAGAATA
** * *
30308365 TTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGCA-ATAAGTCTTATCTCCCTGAAGTTGCAG
1 TTATCTCCCTGAAGTTGTAGTAGAGCAGATTGAAG-ATAGAAGTCTTATCTCCCTGAAGTTGCAG
* * *
30308429 TGGAACAGACTAAAGATAGCGAATCTTATTTCTCTGAAGTTGTAGTGGAACAGATTGAAGCTATA
65 TGGAGCAAACTAAAGATAGCGAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAGCTATA
30308494 AATAAACAGATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCATAGCAAACC
130 AATAAACAGATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCATAGCAAACC
* *
30308547 TTATCTCCCTGAAGTTGTAGTAGAGCAGGTTGAAGTTA-AAGTCTTATCTCCCTGAAGTTGCAGT
1 TTATCTCCCTGAAGTTGTAGTAGAGCAGATTGAAGATAGAAGTCTTATCTCCCTGAAGTTGCAGT
* *
30308611 GGAGCAAACTGAAGATAGCGAGTCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAGCTATAA
66 GGAGCAAACTAAAGATAGCGAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAGCTATAA
* **
30308676 ATAAATAGATCTTATCTCTCTGAAGTTGTAGTAGAGCAGATCATAGCAAACC
131 ATAAACAGATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCATAGCAAACC
* * * * *
30308728 TTATCTCCTTGAAATTGTAG-AGGAGCAGACTGAAGATAGCAGATCTTATCTCCTTGAAGTTGCA
1 TTATCTCCCTGAAGTTGTAGTA-GAGCAGATTGAAGATAGAAG-TCTTATCTCCCTGAAGTTGCA
*
30308792 ATGGAGCAAA
64 GTGGAGCAAA
30308802 TCGTAGCCAC
Statistics
Matches: 230, Mismatches: 21, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
180 1 0.00
181 166 0.72
182 34 0.15
183 29 0.13
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.29
Consensus pattern (182 bp):
TTATCTCCCTGAAGTTGTAGTAGAGCAGATTGAAGATAGAAGTCTTATCTCCCTGAAGTTGCAGT
GGAGCAAACTAAAGATAGCGAATCTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAGCTATAA
ATAAACAGATCTTATCTCTCTGAAGTTACAGTAGAGCAGATCATAGCAAACC
Found at i:30308669 original size:45 final size:43
Alignment explanation
Indices: 30308546--30308915 Score: 163
Period size: 45 Copynumber: 8.2 Consensus size: 43
30308536 CATAGCAAAC
* * *
30308546 CTTATCTCCCTGAAGTTGTAGTAGAGCAGGTTGAAGTTAAAGT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATAAAGT
* * * *
30308589 CTTATCTCCCTGAAGTTGCAGTGGAGCAAACTGAAGATAGCGAGT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATA--AAGT
* *
30308634 CTTATTTCCCTGAAGTTGTAGTGGAACAGATTGAAGCTATAAATAAATAGAT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAG------AT-AA-AG-T
* * * * *
30308686 CTTATCTCTCTGAAGTTGTAGTAGAGCAGA-TCATAG-CAAA-C
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGA-AGATAAAGT
* * * * *
30308727 CTTATCTCCTTGAAATTGTAGAGGAGCAGACTGAAGATAGCAGAT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATA-AAG-T
* * * * * * ** * *
30308772 CTTATCTCCTTGAAGTTGCAATGGAGCAAATCGTAGCCACCATT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATA-AAGT
* * * * * * **
30308816 CTTATCTCTCTGAAGTTGCAATAGAGCAGGA-TAAAAATACACAAAC
1 CTTATCTCCCTGAAGTTGTAGTGGAGCA-GATTGAAGAT--A-AAGT
* * *
30308862 CTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGTTACCAGTT
1 CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATA-AAG-T
30308907 CTTATCTCC
1 CTTATCTCC
30308916 TTTAAGTTCC
Statistics
Matches: 240, Mismatches: 65, Indels: 42
0.69 0.19 0.12
Matches are distributed among these distances:
41 27 0.11
42 3 0.01
43 35 0.15
44 32 0.13
45 76 0.32
46 31 0.13
51 6 0.03
52 30 0.12
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (43 bp):
CTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATAAAGT
Found at i:30308897 original size:135 final size:130
Alignment explanation
Indices: 30308685--30308923 Score: 316
Period size: 135 Copynumber: 1.8 Consensus size: 130
30308675 AATAAATAGA
* * * * *
30308685 TCTTATCTCTCTGAAGTTGTAGTAGAGCAGATCATAGCAAACCTTATCTCCTTGAAATTGTAGAG
1 TCTTATCTCTCTGAAGTTGCAATAGAGCAGATAATAACAAACCTTATCTCCCTGAAATTGTAGAG
*
30308750 GAGCAGACTGAAGATAGCAGATCTTATCTCCTTGAAGTTGCAATGGAGCAAATCGTAGCCACCAT
66 GAGCAGACTGAAGATACCAGATCTTATCTCCTTGAAGTTGCAATGGAGCAAATCGTAGCCACCAT
*
30308815 TCTTATCTCTCTGAAGTTGCAATAGAGCAGGATAAAAATACACAAACCTTATCTCCCTGAAGTTG
1 TCTTATCTCTCTGAAGTTGCAATAGAGCA-GAT---AATA-ACAAACCTTATCTCCCTGAAATTG
* ** * * *
30308880 TAGTGGAGCAGGTTGAAGTTACCAGTTCTTATCTCCTTTAAGTT
61 TAGAGGAGCAGACTGAAGATACCAGATCTTATCTCCTTGAAGTT
30308924 CCAGCGGAGT
Statistics
Matches: 91, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
130 27 0.30
131 3 0.03
134 3 0.03
135 58 0.64
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.31
Consensus pattern (130 bp):
TCTTATCTCTCTGAAGTTGCAATAGAGCAGATAATAACAAACCTTATCTCCCTGAAATTGTAGAG
GAGCAGACTGAAGATACCAGATCTTATCTCCTTGAAGTTGCAATGGAGCAAATCGTAGCCACCAT
Found at i:30309609 original size:13 final size:13
Alignment explanation
Indices: 30309591--30309620 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
30309581 AATAGAAAAA
30309591 CTTTTATTTTTTT
1 CTTTTATTTTTTT
30309604 CTTTTATTTTTTT
1 CTTTTATTTTTTT
30309617 CTTT
1 CTTT
30309621 CGGCTATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.83
Consensus pattern (13 bp):
CTTTTATTTTTTT
Found at i:30310739 original size:30 final size:30
Alignment explanation
Indices: 30310705--30310764 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
30310695 TTGCGTATTA
*
30310705 TTATATGTATATGCTTCT-TTTTAAATCTAT
1 TTATATGTATAT-ATTCTCTTTTAAATCTAT
* *
30310735 TTATATTTATATATTTTCTTTTAAATCTAT
1 TTATATGTATATATTCTCTTTTAAATCTAT
30310765 ATGTAATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 3 0.12
30 23 0.88
ACGTcount: A:0.28, C:0.08, G:0.03, T:0.60
Consensus pattern (30 bp):
TTATATGTATATATTCTCTTTTAAATCTAT
Found at i:30320960 original size:47 final size:47
Alignment explanation
Indices: 30320889--30321399 Score: 761
Period size: 47 Copynumber: 10.6 Consensus size: 47
30320879 CCCTTCGGGA
* * * * * *
30320889 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
30320936 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
30320983 CTTATCACATATATACACTTTCACATTCATCGCATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
30321030 CTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
30321077 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30321124 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
30321171 CTTATCACATATATACGCTTTCACATTCATCACATCGGCCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGG---------C--C-ATTAGGC
30321230 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
30321277 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
30321326 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30321373 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
30321400 TATTCAAATA
Statistics
Matches: 429, Mismatches: 21, Indels: 28
0.90 0.04 0.06
Matches are distributed among these distances:
47 336 0.78
48 1 0.00
49 45 0.10
50 1 0.00
56 1 0.00
58 1 0.00
59 44 0.10
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:30321227 original size:59 final size:59
Alignment explanation
Indices: 30321151--30321367 Score: 226
Period size: 59 Copynumber: 4.1 Consensus size: 59
30321141 CTTTCACATT
*
30321151 CATCACATCGGCCATTAGGCCTTATCACATATATACGCTTTCACATTCATCACATCGGC
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
*
30321210 CATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
* * *
30321269 CAT----TAGGCC-TTA----TCA-CATATATATACACTTTCACATTCAT--CA-----
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
*
30321311 CAT----T-GGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
30321365 CAT
1 CAT
30321368 TAGGTCTTAT
Statistics
Matches: 136, Mismatches: 9, Indels: 31
0.77 0.05 0.18
Matches are distributed among these distances:
41 4 0.03
42 6 0.04
46 2 0.01
47 26 0.19
49 26 0.19
50 2 0.01
54 6 0.04
55 4 0.03
59 60 0.44
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.31
Consensus pattern (59 bp):
CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
Found at i:30321240 original size:153 final size:154
Alignment explanation
Indices: 30321057--30321367 Score: 552
Period size: 155 Copynumber: 2.0 Consensus size: 154
30321047 CTTTCACATT
* *
30321057 CATCGCATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAG
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
30321122 GCCTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
66 GCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
*
30321186 CGCTTTCACATTCATCACATCGGC
131 CACTTTCACATTCATCACATCGGC
*
30321210 CATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
* *
30321275 GCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT
66 GCCTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
30321340 ACACTTTCACATTCATCACATCGGC
130 ACACTTTCACATTCATCACATCGGC
30321365 CAT
1 CAT
30321368 TAGGTCTTAT
Statistics
Matches: 150, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
153 72 0.48
155 78 0.52
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.32
Consensus pattern (154 bp):
CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
GCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
CACTTTCACATTCATCACATCGGC
Found at i:30321371 original size:202 final size:200
Alignment explanation
Indices: 30321010--30321399 Score: 699
Period size: 202 Copynumber: 1.9 Consensus size: 200
30321000 CTTTCACATT
* *
30321010 CATCGCATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCGCATCGGCCATTAG
1 CATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
*
30321075 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATAC
66 GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
30321140 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACGCTTTCACATTCATCACA
131 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
30321205 TCGGC
196 TCGGC
30321210 CATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
1 CATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
* *
30321275 GCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT
66 GCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
*
30321340 ACACTTTCACATTCATCACATCGGCCATTAGGTCTTATCACATATATACACTTTCACATT
129 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
30321400 TATTCAAATA
Statistics
Matches: 181, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
200 73 0.40
202 108 0.60
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (200 bp):
CATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
GCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGC
Found at i:30325544 original size:40 final size:40
Alignment explanation
Indices: 30325512--30325823 Score: 498
Period size: 40 Copynumber: 7.8 Consensus size: 40
30325502 CCAGCATGAT
* * * *
30325512 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** * *
30325552 TGCTCTTCGGGGTTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
30325592 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
**
30325632 TGCTCTTCGAAACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
30325672 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
30325712 TGCTCTTCGAGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
30325752 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
30325792 TGCTCTTCGGGACTTAGCCCGGATACATCACT
1 TGCTCTTCGGGACTTAGCCCGGATACATCACT
30325824 CTCAATTCTC
Statistics
Matches: 256, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 256 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:30327312 original size:47 final size:47
Alignment explanation
Indices: 30327234--30327744 Score: 779
Period size: 47 Copynumber: 10.6 Consensus size: 47
30327224 CCCTTCGGGA
* * * * *
30327234 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
30327281 CCTATCACATATATACACTTTTACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
30327328 CTTATCACATATATACACTTTCACATTCATCGCATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30327375 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30327422 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30327469 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30327516 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGG---------C--C-ATTAGGC
*
30327575 CTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
30327622 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
30327671 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
30327718 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
30327745 TATTCAATAT
Statistics
Matches: 430, Mismatches: 20, Indels: 28
0.90 0.04 0.06
Matches are distributed among these distances:
47 338 0.79
48 1 0.00
49 44 0.10
50 1 0.00
56 1 0.00
58 1 0.00
59 44 0.10
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:30327572 original size:59 final size:59
Alignment explanation
Indices: 30327496--30327712 Score: 235
Period size: 59 Copynumber: 4.1 Consensus size: 59
30327486 CTTTCACATT
30327496 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
*
30327555 CATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACA-T--T----T----
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
* *
30327603 -ATCACATCGGCCATTAGGCCTTATCACATATATA----TACAC-TT--TCACAT---T
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
* *
30327651 CATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
30327710 CAT
1 CAT
30327713 TAGGTCTTAT
Statistics
Matches: 134, Mismatches: 7, Indels: 34
0.77 0.04 0.19
Matches are distributed among these distances:
43 6 0.04
47 34 0.25
49 32 0.24
52 1 0.01
53 4 0.03
54 2 0.01
56 7 0.05
58 1 0.01
59 47 0.35
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (59 bp):
CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGC
Found at i:30327573 original size:106 final size:105
Alignment explanation
Indices: 30327449--30327744 Score: 452
Period size: 106 Copynumber: 2.9 Consensus size: 105
30327439 CTTTCACATT
30327449 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
1 CATCACATCGG-CATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
30327514 GCCTTATCACATATATACACTTTCACATTCATCACATCGGC
65 GCCTTATCACATATATACACTTTCACATTCATCACATCGGC
*
30327555 CATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAG
1 CATCACATCGGC-ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
*
30327620 GCCTTATCACATATATATACACTTTCACATTCATCACATTGGC
65 GCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGC
30327663 CAT----T---C----GGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
1 CATCACATCGGCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
*
30327717 TCTTATCACATATATACACTTTCACATT
66 CCTTATCACATATATACACTTTCACATT
30327745 TATTCAATAT
Statistics
Matches: 183, Mismatches: 4, Indels: 18
0.89 0.02 0.09
Matches are distributed among these distances:
94 19 0.10
96 56 0.31
101 1 0.01
104 1 0.01
105 1 0.01
106 72 0.39
108 33 0.18
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (105 bp):
CATCACATCGGCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG
CCTTATCACATATATACACTTTCACATTCATCACATCGGC
Found at i:30327587 original size:153 final size:154
Alignment explanation
Indices: 30327402--30327712 Score: 570
Period size: 155 Copynumber: 2.0 Consensus size: 154
30327392 CTTTCACATT
30327402 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
30327467 GCCTTATCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
66 GCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
30327531 CACTTTCACATTCATCACATCGGC
131 CACTTTCACATTCATCACATCGGC
* *
30327555 CATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTTATCACATCGGCCATTAG
1 CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
* *
30327620 GCCTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATAT
66 GCCTTATCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATAT
30327685 ACACTTTCACATTCATCACATCGGC
130 ACACTTTCACATTCATCACATCGGC
30327710 CAT
1 CAT
30327713 TAGGTCTTAT
Statistics
Matches: 152, Mismatches: 4, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
153 73 0.48
155 79 0.52
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (154 bp):
CATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAG
GCCTTATCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
CACTTTCACATTCATCACATCGGC
Done.