Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_A02
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 100057689
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3589301 characters in sequence are not A, C, G, or T
File 99 of 295
Found at i:31835684 original size:42 final size:43
Alignment explanation
Indices: 31835624--31835750 Score: 154
Period size: 43 Copynumber: 3.0 Consensus size: 43
31835614 TAGGATTTCT
**
31835624 GATATGTGTTCTTGTGTAAGACCACGTCT-GGACGTTGGCATC
1 GATATGTGTTCTCATGTAAGACCACGTCTAGGACGTTGGCATC
* *
31835666 GATATGTGTTCTCATGTAAGACC-CTGTTTGGGACAG-TGGCATC
1 GATATGTGTTCTCATGTAAGACCAC-GTCTAGGAC-GTTGGCATC
*
31835709 GATATGTGATT-ACATGTAAGACCACGTCTAGGACGTTGGCAT
1 GATATGTG-TTCTCATGTAAGACCACGTCTAGGACGTTGGCAT
31835751 TGTACGATAT
Statistics
Matches: 73, Mismatches: 6, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
41 1 0.01
42 25 0.34
43 43 0.59
44 4 0.05
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (43 bp):
GATATGTGTTCTCATGTAAGACCACGTCTAGGACGTTGGCATC
Found at i:31836690 original size:42 final size:42
Alignment explanation
Indices: 31836643--31836727 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
31836633 ACATCTCGAA
*
31836643 ATAGGGCCTAGCCGGAATAGTGGTTTCGGGACCACAAATCTG
1 ATAGGGCCTAGCCAGAATAGTGGTTTCGGGACCACAAATCTG
*
31836685 ATAGGGCCTAGTCAGAATAGTGGTTTCGGGACCACAAATCTG
1 ATAGGGCCTAGCCAGAATAGTGGTTTCGGGACCACAAATCTG
31836727 A
1 A
31836728 CATCAAAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.22
Consensus pattern (42 bp):
ATAGGGCCTAGCCAGAATAGTGGTTTCGGGACCACAAATCTG
Found at i:31848143 original size:9 final size:9
Alignment explanation
Indices: 31848129--31848161 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
31848119 TTAATTCATT
*
31848129 AAAATGCCC
1 AAAATGACC
31848138 AAAATGACC
1 AAAATGACC
31848147 AAAATGACC
1 AAAATGACC
31848156 AAAATG
1 AAAATG
31848162 CCCTTATGCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.55, C:0.21, G:0.12, T:0.12
Consensus pattern (9 bp):
AAAATGACC
Found at i:31865191 original size:48 final size:48
Alignment explanation
Indices: 31865117--31865384 Score: 310
Period size: 48 Copynumber: 5.6 Consensus size: 48
31865107 TAAAGTACCA
* * * * * * *
31865117 ATGCCATGTCCCTGACATAGTTTTACA-TGAAACCACATATCATCGCCA
1 ATGCCATGTCCCAGACATGGTCTTACACTGCAA-CATATATAATCGCCG
* *
31865165 ATGCCATGTCCAAGACATGGTCTTACACTGGCAA-ATATATAATCGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACT-GCAACATATATAATCGCCG
* * *
31865213 ATGCCATGTCCAAGACATGGTCTTACATTGGCAA-ATATATCATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-GCAACATATATAATCGCCG
31865261 ATGCCATGTCCCAGACATGGTCTTACACTAGC-ACATATATAATCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-GCAACATATATAATCGCCG
* ** * **
31865309 ATGCCATATCCCAGACATGGTCTTACACTGGGACATACATTTTCGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTGCAACATATATAATCGCCG
31865357 ATGCCATGTCCCAGACATGGTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
31865385 GGGATCTCAT
Statistics
Matches: 194, Mismatches: 22, Indels: 8
0.87 0.10 0.04
Matches are distributed among these distances:
47 2 0.01
48 188 0.97
49 1 0.01
50 3 0.02
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGCAACATATATAATCGCCG
Found at i:31865281 original size:96 final size:96
Alignment explanation
Indices: 31865153--31865384 Score: 347
Period size: 96 Copynumber: 2.4 Consensus size: 96
31865143 ATGAAACCAC
* * * *
31865153 ATATCATCGCCAATGCCATGTCCAAGACATGGTCTTACACTGGCAAATATATAATCGCTGATGCC
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCAAATATATAATCGCCGATGCC
* *
31865218 ATGTCCAAGACATGGTCTTACATTGGCAAAT
66 ATATCCAAGACATGGTCTTACACTGGCAAAT
*
31865249 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACATATATAATCGCCGATGCC
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCAAATATATAATCGCCGATGCC
* * *
31865314 ATATCCCAGACATGGTCTTACACTGGGACAT
66 ATATCCAAGACATGGTCTTACACTGGCAAAT
* **
31865345 ACATTTTCGCCGATGCCATGTCCCAGACATGGTCTTACAC
1 ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACAC
31865385 GGGATCTCAT
Statistics
Matches: 123, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
96 123 1.00
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (96 bp):
ATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCAAATATATAATCGCCGATGCC
ATATCCAAGACATGGTCTTACACTGGCAAAT
Found at i:31865987 original size:23 final size:23
Alignment explanation
Indices: 31865960--31866005 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
31865950 CCACCTAGTA
31865960 AAATTATTTATCACACCTCAAAC
1 AAATTATTTATCACACCTCAAAC
31865983 AAATTATTTATCACACCTCAAAC
1 AAATTATTTATCACACCTCAAAC
31866006 CTCCATATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.26, G:0.00, T:0.30
Consensus pattern (23 bp):
AAATTATTTATCACACCTCAAAC
Found at i:31872206 original size:93 final size:93
Alignment explanation
Indices: 31872078--31872249 Score: 283
Period size: 93 Copynumber: 1.8 Consensus size: 93
31872068 GCCCATAAGT
* * * *
31872078 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
31872143 CGAGCTT-GGATGCCTAGTTACTTCTCTC
66 CGAG-TTCGGATGCCTAGTTACTTCTCTC
*
31872171 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
31872236 CGAGTTCGGATGCC
66 CGAGTTCGGATGCC
31872250 CAAACATCCT
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
92 2 0.03
93 71 0.97
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACTTCTCTC
Found at i:31872233 original size:46 final size:46
Alignment explanation
Indices: 31872070--31872242 Score: 149
Period size: 46 Copynumber: 3.7 Consensus size: 46
31872060 TGTAACCCGC
* * * * * *
31872070 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCAGACATTCGCAT
* * * *
31872116 CCATAAGTGAACTCAGACTCAACTCAACGAGCTTGGATGCCTAGTT-ACTT
1 CCATAAGTGAACTCAGACTCAACTCAACGAG-TT-CA-GAC-A-TTCGCAT
* *
31872166 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCAGACATTCGCAT
1 C-CATAAGTGAACTCAGACTCAACTCAACGAGTTCAGACATTCGCAT
31872209 CCATAAGTGAACTCAGACTCAACTCAACGAGTTC
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTC
31872243 GGATGCCCAA
Statistics
Matches: 99, Mismatches: 17, Indels: 22
0.72 0.12 0.16
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 2 0.02
45 1 0.01
46 56 0.57
47 23 0.23
49 2 0.02
50 4 0.04
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCAGACATTCGCAT
Found at i:31874670 original size:30 final size:30
Alignment explanation
Indices: 31874626--31874714 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
31874616 CAAAGATAAC
31874626 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
31874655 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
31874685 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
31874715 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:31874674 original size:15 final size:15
Alignment explanation
Indices: 31874626--31874705 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
31874616 CAAAGATAAC
*
31874626 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
31874640 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
31874655 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
31874670 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
31874685 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
31874700 AAGAAA
1 AAGAAA
31874706 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:31874714 original size:15 final size:15
Alignment explanation
Indices: 31874637--31874714 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
31874627 AGAAAACCGA
31874637 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
31874652 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
31874666 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
31874681 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
31874697 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
31874712 ATA
1 ATA
31874715 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:31877794 original size:46 final size:44
Alignment explanation
Indices: 31877627--31877799 Score: 163
Period size: 46 Copynumber: 3.8 Consensus size: 44
31877617 TGTAACCCGC
* * *
31877627 CCATAAGTGAACTCGGACTCAACTCAA-TAGCTCGGGCGTTCCCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGCATT-CCAT
* *
31877672 CCATAAGTGAACTCGGACTCAACTCAACGAACTT-GG-ATGCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACG-AGTTCGGCATTCC-A--T
* ***
31877718 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGTTCGG-CATTC-CAT
31877765 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
31877800 AATGCCCAAA
Statistics
Matches: 103, Mismatches: 15, Indels: 19
0.75 0.11 0.14
Matches are distributed among these distances:
43 2 0.02
44 2 0.02
45 29 0.28
46 35 0.34
47 30 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (44 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCCAT
Found at i:31890506 original size:17 final size:17
Alignment explanation
Indices: 31890484--31890529 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
31890474 TTCATATGAA
*
31890484 ATAATAGATT-ATTCAAT
1 ATAATAG-TTCATTCAAC
31890501 ATAATAGTTCATTCAAC
1 ATAATAGTTCATTCAAC
*
31890518 ATAATAATTCAT
1 ATAATAGTTCAT
31890530 CCATACCACA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
16 2 0.08
17 24 0.92
ACGTcount: A:0.46, C:0.11, G:0.04, T:0.39
Consensus pattern (17 bp):
ATAATAGTTCATTCAAC
Found at i:31890779 original size:68 final size:68
Alignment explanation
Indices: 31890670--31890830 Score: 286
Period size: 68 Copynumber: 2.4 Consensus size: 68
31890660 TTGCTTTTGG
* * *
31890670 ACTCAAAGACCCCTACGCTGTCTCTGATATAAGTGTAGCGCGGATGCTCACACTCTCCTACACTC
1 ACTCATAGAGCCCTACGCTGTCTCTGATATAAGTGTAGCGCGGATGCTCACACTCTCCCACACTC
31890735 TCA
66 TCA
31890738 ACTCATAGAGCCCTACGCTGTCTCTGATATAAGTGTAGCGCGGATGCTCACACTCTCCCACACTC
1 ACTCATAGAGCCCTACGCTGTCTCTGATATAAGTGTAGCGCGGATGCTCACACTCTCCCACACTC
31890803 TCA
66 TCA
*
31890806 ACTCATAGAGCCCTACGATGTCTCT
1 ACTCATAGAGCCCTACGCTGTCTCT
31890831 ATTGAATAGA
Statistics
Matches: 89, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 89 1.00
ACGTcount: A:0.24, C:0.34, G:0.17, T:0.25
Consensus pattern (68 bp):
ACTCATAGAGCCCTACGCTGTCTCTGATATAAGTGTAGCGCGGATGCTCACACTCTCCCACACTC
TCA
Found at i:31891316 original size:36 final size:36
Alignment explanation
Indices: 31891254--31891334 Score: 90
Period size: 36 Copynumber: 2.2 Consensus size: 36
31891244 ACAGTTTGGG
* ** * *
31891254 AAATTAATACAGTTCTTCATATTAATACAAATCACT
1 AAATTAACACAGTTCACCATAATAATACAAATCACC
* * *
31891290 AAATTAACACAGTTCACCATAATAATATAATTCGCC
1 AAATTAACACAGTTCACCATAATAATACAAATCACC
31891326 AAATTAACA
1 AAATTAACA
31891335 TGGTTCATAA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.47, C:0.19, G:0.04, T:0.31
Consensus pattern (36 bp):
AAATTAACACAGTTCACCATAATAATACAAATCACC
Found at i:31891619 original size:33 final size:34
Alignment explanation
Indices: 31891565--31891688 Score: 120
Period size: 31 Copynumber: 3.8 Consensus size: 34
31891555 GAATTATAAA
31891565 ACCCATATACATATATATTATATA-A-AA-CAAG
1 ACCCATATACATATATATTATATATATAATCAAG
*
31891596 ACCCATATATGCATGTATATTATATATATAATCAAG
1 ACCCATATA--CATATATATTATATATATAATCAAG
** *
31891632 ACCCACGT--ATATATATTATATATATAA-CAAA
1 ACCCATATACATATATATTATATATATAATCAAG
* *
31891663 ACCCA-AGA-ATATATATTGTATATATA
1 ACCCATATACATATATATTATATATATA
31891689 CACATACCTT
Statistics
Matches: 79, Mismatches: 8, Indels: 12
0.80 0.08 0.12
Matches are distributed among these distances:
31 34 0.43
32 18 0.23
33 14 0.18
34 1 0.01
35 2 0.03
36 10 0.13
ACGTcount: A:0.47, C:0.15, G:0.06, T:0.33
Consensus pattern (34 bp):
ACCCATATACATATATATTATATATATAATCAAG
Found at i:31891656 original size:36 final size:36
Alignment explanation
Indices: 31891575--31891657 Score: 89
Period size: 36 Copynumber: 2.2 Consensus size: 36
31891565 ACCCATATAC
*
31891575 ATATATATTATATAAAACAAGACCCATATATGCATGT
1 ATATATA-TATATAAAACAAGACCCATATATACATGT
* *
31891612 ATAT-TATATATATAATCAAGACCCACGTATATATAT-T
1 ATATATATATATA-AAACAAGACCCA--TATATACATGT
31891649 ATATATATA
1 ATATATATA
31891658 ACAAAACCCA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
35 6 0.15
36 13 0.33
37 9 0.23
38 11 0.28
ACGTcount: A:0.46, C:0.12, G:0.06, T:0.36
Consensus pattern (36 bp):
ATATATATATATAAAACAAGACCCATATATACATGT
Found at i:31896240 original size:458 final size:459
Alignment explanation
Indices: 31895382--31896304 Score: 1501
Period size: 458 Copynumber: 2.0 Consensus size: 459
31895372 TAAGATAGAT
* *
31895382 TGTGAATTAGACTTTCGGATTGGTACTGATGGATGTATAATGTTCAAAGATAGGGTTTGTGTACC
1 TGTGAATTAGACTTTCGGATTGGTACCGATGGATGTATAATGTTCAAAGATAAGGTTTGTGTACC
*
31895447 CAAAGACAATGAACTTATTAAGAGGATTTTACAGAGGCACATAGTGGCTGCTTGTCTATCCATCC
66 CAAAGACAATGAACTTATTAAGAGGATTTTACAGAGGCACATAGTAGCTGCTTGTCTATCCATCC
*
31895512 GGGTAGTGTGAAATGTATAATGACCTGAAGAAAATGTACTGGTGGTCAGGAATGAAAAGAGACAT
131 GGGTAGTGTGAAATGTATAATGACCTGAAGAAAATGTACTAGTGGTCAGGAATGAAAAGAGACAT
*
31895577 TTCAGAGTTTGTTTATAAGTGTCTAGTTTGTCAGCAAGTGAAGGCCGAACACCAAGTACCTTCGG
196 TTCAAAGTTTGTTTATAAGTGTCTAGTTTGTCAGCAAGTGAAGGCCGAACACCAAGTACCTTCGG
* * * ** * **
31895642 GTTTACTTTAACTTGTGATGGTTCCCGAATGGAAATGGGACCGTGTAACCATGGATTTTATGTTA
261 GTTTACTTCAACCTATGATGGTTCCCGAATGGAAATAAGACCGTATAACCATGGATTTTATGCCA
* * * *
31895707 GGGTTGCCTTTAACACCAAGGAAAAAGGATTACGTTTGGGTTGTTGTTGATAGGCTTACCAAGTC
326 AGGTTGCCTTTAACACCAAGGAAAAAGGATTACATTCGAGTTGTTGTTGATAGGCTTACCAAGTC
* * *
31895772 GACACATTTTATATCAGTGCGTACCGACTATTCCTTTGAGAAATTGGCTGAATTGTATGTTTCCA
391 GACACATTTTATACCAGTGCATACCGACTATTCCCTTGAGAAATTGGCTGAATTGTATGTTTCCA
31895837 AGAC
456 AGAC
* *
31895841 TGTGAATTAGACTTTTGGATTGGTACCGATGGGTGTATAATGTTCAAAGATAAGGTTTGTGTACC
1 TGTGAATTAGACTTTCGGATTGGTACCGATGGATGTATAATGTTCAAAGATAAGGTTTGTGTACC
* *
31895906 CAAAGACAATGAACTTATTCAGAGGATTTTACAAGAGGCACATAGTAGTTGCTTGTCTATCCATC
66 CAAAGACAATGAACTTATTAAGAGGATTTTAC-AGAGGCACATAGTAGCTGCTTGTCTATCCATC
*
31895971 TGGGTAGTGTGAAATGTATAATGACCTGAAGAAAATGTACTAGTGGTC-GAGAATG-AAA-AGAC
130 CGGGTAGTGTGAAATGTATAATGACCTGAAGAAAATGTACTAGTGGTCAG-GAATGAAAAGAGAC
* *
31896033 ATTTCAAAGTTTGTTTCTAAGTGTCTAGTTTGTCAGCAAGTGAAGGCTGAACACCAAGTACCTTC
194 ATTTCAAAGTTTGTTTATAAGTGTCTAGTTTGTCAGCAAGTGAAGGCCGAACACCAAGTACCTTC
*
31896098 GGGTTTACTTCAACCTATGATGGTTCCTGAATGGAAATAAGACCGTATAACCATGGATTTTATGC
259 GGGTTTACTTCAACCTATGATGGTTCCCGAATGGAAATAAGACCGTATAACCATGGATTTTATGC
* * *
31896163 CAAGGTTGCCTTTGACACCAAGGAAAAAGGATTCCATTCGAGTTGTTGTTTATAGGCTTACCAAG
324 CAAGGTTGCCTTTAACACCAAGGAAAAAGGATTACATTCGAGTTGTTGTTGATAGGCTTACCAAG
*
31896228 TCGACACATTTTATACCCGTGCATACCGACTATTCCCTTGAGAAATTGGCTGAATTGTATGTTTC
389 TCGACACATTTTATACCAGTGCATACCGACTATTCCCTTGAGAAATTGGCTGAATTGTATGTTTC
* *
31896293 TAAGAT
454 CAAGAC
31896299 TGTGAA
1 TGTGAA
31896305 ACTTCATGGA
Statistics
Matches: 428, Mismatches: 34, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
458 251 0.59
459 96 0.22
460 81 0.19
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (459 bp):
TGTGAATTAGACTTTCGGATTGGTACCGATGGATGTATAATGTTCAAAGATAAGGTTTGTGTACC
CAAAGACAATGAACTTATTAAGAGGATTTTACAGAGGCACATAGTAGCTGCTTGTCTATCCATCC
GGGTAGTGTGAAATGTATAATGACCTGAAGAAAATGTACTAGTGGTCAGGAATGAAAAGAGACAT
TTCAAAGTTTGTTTATAAGTGTCTAGTTTGTCAGCAAGTGAAGGCCGAACACCAAGTACCTTCGG
GTTTACTTCAACCTATGATGGTTCCCGAATGGAAATAAGACCGTATAACCATGGATTTTATGCCA
AGGTTGCCTTTAACACCAAGGAAAAAGGATTACATTCGAGTTGTTGTTGATAGGCTTACCAAGTC
GACACATTTTATACCAGTGCATACCGACTATTCCCTTGAGAAATTGGCTGAATTGTATGTTTCCA
AGAC
Found at i:31897968 original size:19 final size:20
Alignment explanation
Indices: 31897927--31897969 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
31897917 TTTTATAAAG
* *
31897927 TTTGTAAAATAGATGGTACT
1 TTTGTAAAATAGATGGAAAT
*
31897947 TTTGTGAAATA-ATGGAAAT
1 TTTGTAAAATAGATGGAAAT
31897966 TTTG
1 TTTG
31897970 GGTTGTTGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.35, C:0.02, G:0.21, T:0.42
Consensus pattern (20 bp):
TTTGTAAAATAGATGGAAAT
Found at i:31898554 original size:48 final size:48
Alignment explanation
Indices: 31898434--31898647 Score: 154
Period size: 46 Copynumber: 4.5 Consensus size: 48
31898424 GATATGTGTA
** * *
31898434 CTAGTGTAAGACATGTTTGGGACATGCATCGGCCAC-ATTA-A-G-AGAG
1 CTAGTGTAAGACATGACTGGGACATGCATCGGCCTCGA-GACATGCA-AG
* * ** * *
31898480 CCAGTCTAAGACATGTTTGGGACATGCATAGGCCTCGAGAGATGCAAG
1 CTAGTGTAAGACATGACTGGGACATGCATCGGCCTCGAGACATGCAAG
* * * *
31898528 TTAGTGTAAGACATGACTGGGACATGCATCGGCATTGAGACAAG--AG
1 CTAGTGTAAGACATGACTGGGACATGCATCGGCCTCGAGACATGCAAG
* * * * * * *
31898574 CTAATGTAAGATATGTCTGGGACATGCATCGACCTCAAGATATACAAG
1 CTAGTGTAAGACATGACTGGGACATGCATCGGCCTCGAGACATGCAAG
*
31898622 CTAGTGTAAGACCT-ATCTGGGACATG
1 CTAGTGTAAGACATGA-CTGGGACATG
31898648 GCATTAGCTT
Statistics
Matches: 131, Mismatches: 30, Indels: 12
0.76 0.17 0.07
Matches are distributed among these distances:
46 68 0.52
47 2 0.02
48 60 0.46
49 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.23
Consensus pattern (48 bp):
CTAGTGTAAGACATGACTGGGACATGCATCGGCCTCGAGACATGCAAG
Found at i:31898596 original size:94 final size:92
Alignment explanation
Indices: 31898434--31898647 Score: 225
Period size: 94 Copynumber: 2.3 Consensus size: 92
31898424 GATATGTGTA
** * * *
31898434 CTAGTGTAAGACATGTTTGGGACATGCATCGGCCACATTAAGAGAGCCAGTCTAAGACATGTTTG
1 CTAGTGTAAGACATGACTGGGACATGCATCGG-C-CATTAAAAGAGCCAATCTAAGACATGTCTG
* * *
31898499 GGACATGCATAGGCCTCGAGAGATGCAAG
64 GGACATGCATAGACCTCAAGAGATACAAG
* * * *
31898528 TTAGTGTAAGACATGACTGGGACATGCATCGG-CATTGAGACAAGAGCTAATGTAAGATATGTCT
1 CTAGTGTAAGACATGACTGGGACATGCATCGGCCATT-A-A-AAGAGCCAATCTAAGACATGTCT
* *
31898592 GGGACATGCATCGACCTCAAGATATACAAG
63 GGGACATGCATAGACCTCAAGAGATACAAG
*
31898622 CTAGTGTAAGACCT-ATCTGGGACATG
1 CTAGTGTAAGACATGA-CTGGGACATG
31898648 GCATTAGCTT
Statistics
Matches: 100, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
91 4 0.04
92 1 0.01
93 2 0.02
94 93 0.93
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.23
Consensus pattern (92 bp):
CTAGTGTAAGACATGACTGGGACATGCATCGGCCATTAAAAGAGCCAATCTAAGACATGTCTGGG
ACATGCATAGACCTCAAGAGATACAAG
Found at i:31898732 original size:49 final size:49
Alignment explanation
Indices: 31898667--31898838 Score: 163
Period size: 49 Copynumber: 3.5 Consensus size: 49
31898657 TGTTGTGTGT
* *
31898667 CAGTGTAAGACCTGTCTGGGACATGGGATCGACATTGATAGATTAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGGATCGACATTGATAGATGAAAGC
* * * * * *
31898716 CAGTGTAAGACTTGTCTGGG--ATGCGGCATCGGCCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATG-GG-ATCGACATTGATAGATGAAAGC
* * * * **
31898765 CAGTGTAAGACCTATCTGGGACATAGCATCGACTTTGAT-G-TGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGGATCGACATTGATAGATGAAAGC
31898812 CAGTGTAAGACCATGTCTGGGACATGG
1 CAGTGTAAGACC-TGTCTGGGACATGG
31898839 CGTCGGCATC
Statistics
Matches: 97, Mismatches: 21, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
47 19 0.20
48 14 0.14
49 61 0.63
50 1 0.01
51 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.26
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGGATCGACATTGATAGATGAAAGC
Found at i:31902165 original size:27 final size:27
Alignment explanation
Indices: 31902146--31902420 Score: 415
Period size: 27 Copynumber: 10.2 Consensus size: 27
31902136 ATTACCAAAG
31902146 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
31902173 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
31902200 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
31902227 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
31902254 TACCCTTGATTTACAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * *
31902281 TACCCTCAATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
31902308 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
*
31902335 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* *
31902362 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTGTTT
* * **
31902389 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTT
31902416 TACCC
1 TACCC
31902421 CTAGGGTGTT
Statistics
Matches: 230, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 230 1.00
ACGTcount: A:0.28, C:0.21, G:0.08, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTGTTT
Found at i:31904840 original size:10 final size:10
Alignment explanation
Indices: 31904825--31904867 Score: 50
Period size: 10 Copynumber: 4.0 Consensus size: 10
31904815 TAGTTTAGGT
31904825 TTAATTAAAC
1 TTAATTAAAC
31904835 TTAATTAATTTAC
1 TTAATTAA---AC
*
31904848 TTAATTATAC
1 TTAATTAAAC
31904858 TTAATTAAAC
1 TTAATTAAAC
31904868 AATACTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
10 19 0.68
13 9 0.32
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (10 bp):
TTAATTAAAC
Found at i:31906530 original size:57 final size:58
Alignment explanation
Indices: 31906456--31906575 Score: 163
Period size: 57 Copynumber: 2.1 Consensus size: 58
31906446 TTTTTCAGGG
* * * *
31906456 CATTTTCATTTTCATTTTGGAGAAAACCACATTCATTTCCAAATGATTT-C-ATTTCTT
1 CATTTTCATTTTAATTTTGGAAAAAACCACAATCATTTCCAAATG-TTTCCTATTTCTC
* *
31906513 CATTTTCATTTTAATTTTGGAAAAAACCATAATCATTTCTAAATGTTTCCTATTTCTC
1 CATTTTCATTTTAATTTTGGAAAAAACCACAATCATTTCCAAATGTTTCCTATTTCTC
31906571 CATTT
1 CATTT
31906576 CACCATTTCT
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
56 3 0.05
57 41 0.75
58 11 0.20
ACGTcount: A:0.29, C:0.18, G:0.06, T:0.47
Consensus pattern (58 bp):
CATTTTCATTTTAATTTTGGAAAAAACCACAATCATTTCCAAATGTTTCCTATTTCTC
Found at i:31910914 original size:22 final size:22
Alignment explanation
Indices: 31910837--31910987 Score: 151
Period size: 22 Copynumber: 6.7 Consensus size: 22
31910827 TCAGCTCGTA
*
31910837 AGAGCTTACTGTTGTCAGCTCATT
1 AGAGCTTACTG-T-TCAGCTCAAT
* * **
31910861 GGAGCTTACTGTTTCAACT-TGT
1 AGAGCTTACTG-TTCAGCTCAAT
*
31910883 ATGAGTTTACTGTTCAGCTCAAT
1 A-GAGCTTACTGTTCAGCTCAAT
* *
31910906 AGAGCTTACTGTTCAGCTCGAC
1 AGAGCTTACTGTTCAGCTCAAT
*
31910928 AGAGCTTACTGTTCAGCTCGAT
1 AGAGCTTACTGTTCAGCTCAAT
* *
31910950 AGAGCTTACCGTTTCAGCTCATT
1 AGAGCTTACTG-TTCAGCTCAAT
31910973 AGAGCTTACTGTTCA
1 AGAGCTTACTGTTCA
31910988 TCAGCTCAAG
Statistics
Matches: 107, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
22 60 0.56
23 35 0.33
24 12 0.11
ACGTcount: A:0.23, C:0.22, G:0.21, T:0.35
Consensus pattern (22 bp):
AGAGCTTACTGTTCAGCTCAAT
Found at i:31910981 original size:45 final size:44
Alignment explanation
Indices: 31910802--31910987 Score: 164
Period size: 45 Copynumber: 4.0 Consensus size: 44
31910792 GAACTCACCA
* * *
31910802 CAGCTCATAAGAGCTTACTAATATATCAGCTCGTAAGAGCTTACTGTTGT
1 CAGCTCAT-AGAGCTTACT-GT-T-TCAGCTCATTAGAGCTTACTG-T-T
* * *
31910852 CAGCTCATTGGAGCTTACTGTTTCAACT--TGTATGAGTTTACTGTT
1 CAGCTCA-TAGAGCTTACTGTTTCAGCTCAT-TA-GAGCTTACTGTT
*
31910897 CAGCTCAATAGAGCTTACTG-TTCAGCTCGA-CAGAGCTTACTGTT
1 CAGCTC-ATAGAGCTTACTGTTTCAGCTC-ATTAGAGCTTACTGTT
*
31910941 CAGCTCGATAGAGCTTACCGTTTCAGCTCATTAGAGCTTACTGTT
1 CAGCTC-ATAGAGCTTACTGTTTCAGCTCATTAGAGCTTACTGTT
31910986 CA
1 CA
31910988 TCAGCTCAAG
Statistics
Matches: 115, Mismatches: 12, Indels: 23
0.77 0.08 0.15
Matches are distributed among these distances:
44 36 0.31
45 43 0.37
46 3 0.03
47 14 0.12
48 1 0.01
49 1 0.01
50 16 0.14
51 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (44 bp):
CAGCTCATAGAGCTTACTGTTTCAGCTCATTAGAGCTTACTGTT
Found at i:31917810 original size:42 final size:42
Alignment explanation
Indices: 31917752--31917857 Score: 169
Period size: 42 Copynumber: 2.5 Consensus size: 42
31917742 GTACAGGGGG
31917752 CACACGGCC-AGAACACATGCCCATGGGGAAGACCGTGTGTCA
1 CACACGGCCTAG-ACACATGCCCATGGGGAAGACCGTGTGTCA
*
31917794 CACACGGCCTAGACACATGCCCATGGGGTAGACCGTGTGTCA
1 CACACGGCCTAGACACATGCCCATGGGGAAGACCGTGTGTCA
* *
31917836 CACACAGCCTAGACACACGCCC
1 CACACGGCCTAGACACATGCCC
31917858 GTGTGTCTAC
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
42 58 0.97
43 2 0.03
ACGTcount: A:0.27, C:0.35, G:0.25, T:0.12
Consensus pattern (42 bp):
CACACGGCCTAGACACATGCCCATGGGGAAGACCGTGTGTCA
Found at i:31918943 original size:12 final size:13
Alignment explanation
Indices: 31918915--31918941 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
31918905 TAATTAAATG
31918915 AATTAAAAAGCCA
1 AATTAAAAAGCCA
31918928 AATTAAAAAGCCA
1 AATTAAAAAGCCA
31918941 A
1 A
31918942 TTTTTGTCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.15, G:0.07, T:0.15
Consensus pattern (13 bp):
AATTAAAAAGCCA
Found at i:31919843 original size:42 final size:42
Alignment explanation
Indices: 31919796--31919902 Score: 114
Period size: 43 Copynumber: 2.6 Consensus size: 42
31919786 AGATTATGTT
* *
31919796 TAAGACCATATCTAGGATATGGCATCGATATGAGACTT-CATG
1 TAAGACCATATCTGGGATATGGCATCGATACGAGA-TTACATG
* * *
31919838 TAAGACCATAGCTGGGCTATTGCCATCGATACGAGATTACATG
1 TAAGACCATATCTGGGATA-TGGCATCGATACGAGATTACATG
*
31919881 T---ACCATATATGGGATATGGCAT
1 TAAGACCATATCTGGGATATGGCAT
31919903 TGGTACGGTA
Statistics
Matches: 54, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
39 5 0.09
40 12 0.22
42 18 0.33
43 19 0.35
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (42 bp):
TAAGACCATATCTGGGATATGGCATCGATACGAGATTACATG
Found at i:31927098 original size:13 final size:13
Alignment explanation
Indices: 31927065--31927107 Score: 52
Period size: 13 Copynumber: 3.4 Consensus size: 13
31927055 TGATTAGTTT
31927065 ATTTATTTTAGTC
1 ATTTATTTTAGTC
**
31927078 ATTT-TTTTCTTC
1 ATTTATTTTAGTC
*
31927090 ATTTATTTTAGTT
1 ATTTATTTTAGTC
31927103 ATTTA
1 ATTTA
31927108 AATTCCCTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
12 10 0.42
13 14 0.58
ACGTcount: A:0.21, C:0.07, G:0.05, T:0.67
Consensus pattern (13 bp):
ATTTATTTTAGTC
Found at i:31940732 original size:31 final size:31
Alignment explanation
Indices: 31940697--31940756 Score: 102
Period size: 31 Copynumber: 1.9 Consensus size: 31
31940687 CTACTTTCAA
*
31940697 GTTACACATTTGTACCACATTTATTGTCTAG
1 GTTACACATTTGCACCACATTTATTGTCTAG
*
31940728 GTTACACATTTGCATCACATTTATTGTCT
1 GTTACACATTTGCACCACATTTATTGTCT
31940757 TACACATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.25, C:0.20, G:0.12, T:0.43
Consensus pattern (31 bp):
GTTACACATTTGCACCACATTTATTGTCTAG
Found at i:31942324 original size:104 final size:104
Alignment explanation
Indices: 31942202--31942425 Score: 369
Period size: 104 Copynumber: 2.2 Consensus size: 104
31942192 AATGGATATC
31942202 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
31942267 GGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCA
66 GGATCA-CGCACATAGCACCACCAATAAACCGGGGAATCA
*
31942306 GCACTTAGCAACCCCTCGGGGGAATCAGTACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
* *
31942371 GGATCACGCACATAGCACCACCCATAAATCGGGGAATCA
66 GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
**
31942410 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
31942426 TTTATATACA
Statistics
Matches: 112, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
104 111 0.99
105 1 0.01
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.18
Consensus pattern (104 bp):
GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
GGATCACGCACATAGCACCACCAATAAACCGGGGAATCA
Found at i:31943992 original size:45 final size:45
Alignment explanation
Indices: 31943924--31944011 Score: 122
Period size: 45 Copynumber: 2.0 Consensus size: 45
31943914 CCAAAACATG
* *
31943924 TGTCATATACATCATGAACTCAGAACACAACTCAATGAGTTCATA
1 TGTCACATACATCATAAACTCAGAACACAACTCAATGAGTTCATA
* * * *
31943969 TGTCACATATATCATAAATTCAGACCACAACTCATTGAGTTCA
1 TGTCACATACATCATAAACTCAGAACACAACTCAATGAGTTCA
31944012 GATCACATAG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.39, C:0.23, G:0.10, T:0.28
Consensus pattern (45 bp):
TGTCACATACATCATAAACTCAGAACACAACTCAATGAGTTCATA
Found at i:31951463 original size:40 final size:40
Alignment explanation
Indices: 31951351--31951516 Score: 192
Period size: 40 Copynumber: 4.2 Consensus size: 40
31951341 AGACTAAGAT
* * *
31951351 CCGAAGGCATTTGTGCGAGTTGCTATATCCAGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* * * ** *
31951391 CCGAAGGTATTTATGCTAGCGATTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
31951431 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* * *
31951471 CCGAAGGCATTTGAGCGAG-TAGCTATATTC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTC
31951510 CCGAAGG
1 CCGAAGG
31951517 TACTTGGTTT
Statistics
Matches: 105, Mismatches: 20, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
39 17 0.16
40 88 0.84
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:31959435 original size:40 final size:40
Alignment explanation
Indices: 31959368--31959573 Score: 281
Period size: 40 Copynumber: 5.2 Consensus size: 40
31959358 GGACTAAGAT
* *
31959368 CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* * * ** * *
31959408 CCGAAGGTATTTATGCTAGCGATTATATCCGAGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
31959448 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
*
31959488 CCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
31959528 CCGAAGGCATTTGAGCGAG-TAGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTA-CTATATCCGGGCTAAGTC
31959567 CCGAAGG
1 CCGAAGG
31959574 TACTTGGTTT
Statistics
Matches: 145, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 17 0.12
40 128 0.88
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:31965123 original size:47 final size:47
Alignment explanation
Indices: 31965072--31965169 Score: 187
Period size: 47 Copynumber: 2.1 Consensus size: 47
31965062 TAATGTTAAA
*
31965072 AATTAATTTTTAACAATAGAAATAAATGAAAACTTTATCAGAAGATC
1 AATTAATTTTTAACAATAAAAATAAATGAAAACTTTATCAGAAGATC
31965119 AATTAATTTTTAACAATAAAAATAAATGAAAACTTTATCAGAAGATC
1 AATTAATTTTTAACAATAAAAATAAATGAAAACTTTATCAGAAGATC
31965166 AATT
1 AATT
31965170 CATTCTCTAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 50 1.00
ACGTcount: A:0.52, C:0.08, G:0.07, T:0.33
Consensus pattern (47 bp):
AATTAATTTTTAACAATAAAAATAAATGAAAACTTTATCAGAAGATC
Found at i:31971558 original size:16 final size:16
Alignment explanation
Indices: 31971537--31971571 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
31971527 AATATATATA
31971537 CATAAAATAGTCGTTT
1 CATAAAATAGTCGTTT
31971553 CATAAAATAGTCGTTT
1 CATAAAATAGTCGTTT
31971569 CAT
1 CAT
31971572 CTTTAGTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.37, C:0.14, G:0.11, T:0.37
Consensus pattern (16 bp):
CATAAAATAGTCGTTT
Found at i:31971585 original size:7 final size:7
Alignment explanation
Indices: 31971573--31971602 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
31971563 TCGTTTCATC
31971573 TTTAGTA
1 TTTAGTA
31971580 TTTAGTA
1 TTTAGTA
*
31971587 TTTAGCA
1 TTTAGTA
31971594 TTTAGTA
1 TTTAGTA
31971601 TT
1 TT
31971603 ATGTATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (7 bp):
TTTAGTA
Found at i:31972489 original size:21 final size:21
Alignment explanation
Indices: 31972464--31972527 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
31972454 GTCATCCTCT
31972464 CAAC-ACCCACAACCGAAGCAA
1 CAACAACCC-CAACCGAAGCAA
* *
31972485 CAACAACCCCCACCGGAGCAA
1 CAACAACCCCAACCGAAGCAA
* **
31972506 CCACAACCCCCGCCGAAGCAA
1 CAACAACCCCAACCGAAGCAA
31972527 C
1 C
31972528 CAAAGAGGAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
21 33 0.89
22 4 0.11
ACGTcount: A:0.39, C:0.48, G:0.12, T:0.00
Consensus pattern (21 bp):
CAACAACCCCAACCGAAGCAA
Found at i:31972528 original size:21 final size:21
Alignment explanation
Indices: 31972475--31972529 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
31972465 AACACCCACA
*
31972475 ACCGAAGCAACAACAACCCCC
1 ACCGAAGCAACCACAACCCCC
*
31972496 ACCGGAGCAACCACAACCCCC
1 ACCGAAGCAACCACAACCCCC
*
31972517 GCCGAAGCAACCA
1 ACCGAAGCAACCA
31972530 AAGAGGAATC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.38, C:0.47, G:0.15, T:0.00
Consensus pattern (21 bp):
ACCGAAGCAACCACAACCCCC
Found at i:31975876 original size:40 final size:39
Alignment explanation
Indices: 31975832--31975932 Score: 123
Period size: 40 Copynumber: 2.5 Consensus size: 39
31975822 GATAAATTGA
*
31975832 CTATATTCGACACTAAGTGTGC-AATTTGAAATAGCTTCGG
1 CTATATTAG-CACTAAGTGTGCGAA-TTGAAATAGCTTCGG
* *
31975872 CTATAAATAGCACTAAGTGTGCGAATTGGAATAGCTTCGG
1 CTAT-ATTAGCACTAAGTGTGCGAATTGAAATAGCTTCGG
*
31975912 CTATATGAGGCACTAAGTGTG
1 CTATATTA-GCACTAAGTGTG
31975933 TGATACCGAG
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
39 2 0.04
40 46 0.87
41 5 0.09
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.30
Consensus pattern (39 bp):
CTATATTAGCACTAAGTGTGCGAATTGAAATAGCTTCGG
Found at i:31983376 original size:40 final size:40
Alignment explanation
Indices: 31983155--31983372 Score: 350
Period size: 40 Copynumber: 5.5 Consensus size: 40
31983145 AAACCAAGTA
* *
31983155 CCTTCGGGAATTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
31983194 CCTTCGGGATTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
31983234 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
31983274 CCTTCGGGACTTAGCCCGGATATAGTAACTCGTACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
31983314 CCTTCGGGACTTAGCCCGGTTATAGAAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
31983354 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
31983373 TTATCATCCG
Statistics
Matches: 168, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 14 0.08
40 154 0.92
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:31992783 original size:127 final size:125
Alignment explanation
Indices: 31992334--31992951 Score: 749
Period size: 126 Copynumber: 4.9 Consensus size: 125
31992324 GGCCAAGCAT
* * * *
31992334 GAACTACTGTAGAAAAAGAGCGTCCACGTGTGAGCTTTCTTCAAAAATTTGGATGACATTGCATC
1 GAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTT-TTCAAAAATTTTGACGACATTGCATC
*
31992399 ATGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATC-T-T-AAAATTATTTTTTCAG
65 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
* * *
31992457 GAGCTACTGTAACAAAAGAGCATCCACGTGGGAGCTTTTTTCAAAAATTTTGACGACATTGCATC
1 GAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGC-TTTTTCAAAAATTTTGACGACATTGCATC
*
31992522 CTACTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
65 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
* * *
31992583 GAACTACTGTAACAAAAGAGCGTCCATGTGGGAGCCTTTTTCAAAAAGTTTGACGACATTGCATC
1 GAACTACTGTAGCAAAAGAGCGTCCACGTGGGAG-CTTTTTCAAAAATTTTGACGACATTGCATC
* * * * *
31992648 TTGATTGAAGCATTTTTGACACTATTTGTTCAGAAACATTTTCTCAAAATTATTTTTTTTAG
65 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTA-TTTTTTCAG
* * *
31992710 GAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCATTTTTCAGAAATTTTGATGACATTGTATC
1 GAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGC-TTTTTCAAAAATTTTGACGACATTGCATC
* * ** *
31992775 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGACACGTCTTCTCAAAATTAATTTTTAAAAA
65 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATT-ATTTTT-TCAG
* *** * * * * *
31992838 AAACTACTGTAGCAAAAGAATATACACGTGGTAGCTTTTTTCTATATTTTTG-CTGACATTGCAT
1 GAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGC-TTTTTCAAAAATTTTGAC-GACATTGCAT
* * * * * * **
31992902 CTTACTTGAAGTGTTTCTGACACTATTTGCTCAAAAAGGTCTTCTCAAAA
64 CCTGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAA
31992952 AAAATTTTAT
Statistics
Matches: 430, Mismatches: 55, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
123 92 0.21
124 4 0.01
125 1 0.00
126 123 0.29
127 116 0.27
128 94 0.22
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.36
Consensus pattern (125 bp):
GAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCAAAAATTTTGACGACATTGCATCC
TGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
Found at i:31992801 original size:253 final size:249
Alignment explanation
Indices: 31992334--31992832 Score: 743
Period size: 253 Copynumber: 2.0 Consensus size: 249
31992324 GGCCAAGCAT
* *
31992334 GAACTACTGTAGAAAAAGAGCGTCCACGTGTGAGCTTTCTTCAAAAATTTGGATGACATTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTCTTCAAAAATTTGGACGACATTGCATC
* * * *
31992399 ATGCTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTAAAATTATTTTTTCAGGAGCTAC
66 ATGATTGAAGCATTTTTGACACTATTTGTTCAGAAACATCTCAAAATTATTTTTTCAGGAACTAC
*
31992464 TGTAACAAAAGAGCATCCACGTGGGAGCTTTTTTCAAAAATTTTGACGACATTGCATCCTACTTG
131 TGTAACAAAAGAGCATCCACGTGGGAGCATTTTTCAAAAATTTTGACGACATTGCATCCTACTTG
*
31992529 AAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTATTTTTTCAG
196 AAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTAATTTTTCAG
*
31992583 GAACTACTGTA-ACAAAAGAGCGTCCATGTGGGAGCCTTT-TTCAAAAAGTTT-GACGACATTGC
1 GAACTACTGTAGA-AAAAGAGCGTCCACGTGGGAG-CTTTCTTCAAAAA-TTTGGACGACATTGC
* *
31992645 ATCTTGATTGAAGCATTTTTGACACTATTTGTTCAGAAACATTTTCTCAAAATTATTTTTTTTAG
63 ATCATGATTGAAGCATTTTTGACACTATTTGTTCAGAAACA---TCTCAAAATTA-TTTTTTCAG
* * * * *
31992710 GAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCATTTTTCAGAAATTTTGATGACATTGTATC
124 GAACTACTGTAACAAAAGAGCATCCACGTGGGAGCATTTTTCAAAAATTTTGACGACATTGCATC
* * *
31992775 CTGCTTGAAGCGTTTTTGACACTATTTGTTCAGACACGTCTTCTCAAAATTAATTTTT
189 CTACTTGAAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTAATTTTT
31992833 AAAAAAAACT
Statistics
Matches: 224, Mismatches: 19, Indels: 10
0.89 0.08 0.04
Matches are distributed among these distances:
248 1 0.00
249 86 0.38
250 7 0.03
252 10 0.04
253 120 0.54
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (249 bp):
GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTCTTCAAAAATTTGGACGACATTGCATC
ATGATTGAAGCATTTTTGACACTATTTGTTCAGAAACATCTCAAAATTATTTTTTCAGGAACTAC
TGTAACAAAAGAGCATCCACGTGGGAGCATTTTTCAAAAATTTTGACGACATTGCATCCTACTTG
AAGCGTTTTTGACACTATTTGTTCAGAAACATCTTCTCAAAATTAATTTTTCAG
Found at i:31993084 original size:30 final size:30
Alignment explanation
Indices: 31993046--31993242 Score: 119
Period size: 30 Copynumber: 6.8 Consensus size: 30
31993036 ATTTTAACCA
31993046 AAAACCCTAATTTAATTTATCTAAAACCCT
1 AAAACCCTAATTTAATTTATCTAAAACCCT
* * * *
31993076 ATAACCCTAATTTACTTAATCTATTTAAAAACC-
1 AAAACCCTAA--T--TTAATTTATCTAAAACCCT
*
31993109 ATAAAGCCTAATTTAATTTAT-T-------T
1 A-AAACCCTAATTTAATTTATCTAAAACCCT
*
31993132 TAAACCCTAATTTAATTTATCTAAAACCCT
1 AAAACCCTAATTTAATTTATCTAAAACCCT
** * * * **
31993162 AAAACTTTAGTCTAATTAAT-TTTAACCC-
1 AAAACCCTAATTTAATTTATCTAAAACCCT
31993190 AAAACCCTAATTTAATTTATCTAAAACCCT
1 AAAACCCTAATTTAATTTATCTAAAACCCT
* * * *
31993220 AGAACTCTAATTTACTTAATCTA
1 AAAACCCTAATTTAATTTATCTA
31993243 TTTAAAAACC
Statistics
Matches: 123, Mismatches: 28, Indels: 32
0.67 0.15 0.17
Matches are distributed among these distances:
22 18 0.15
23 1 0.01
28 15 0.12
29 13 0.11
30 51 0.41
32 2 0.02
33 1 0.01
34 22 0.18
ACGTcount: A:0.41, C:0.20, G:0.02, T:0.38
Consensus pattern (30 bp):
AAAACCCTAATTTAATTTATCTAAAACCCT
Found at i:31993105 original size:34 final size:34
Alignment explanation
Indices: 31993057--31993123 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
31993047 AAACCCTAAT
* *
31993057 TTAATTTATCT-AAAACCCTATAACCCTAATTTAC
1 TTAATCTATCTAAAAACCATA-AACCCTAATTTAC
* *
31993091 TTAATCTATTTAAAAACCATAAAGCCTAATTTA
1 TTAATCTATCTAAAAACCATAAACCCTAATTTA
31993124 ATTTATTTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 20 0.71
35 8 0.29
ACGTcount: A:0.42, C:0.19, G:0.01, T:0.37
Consensus pattern (34 bp):
TTAATCTATCTAAAAACCATAAACCCTAATTTAC
Found at i:31993140 original size:22 final size:22
Alignment explanation
Indices: 31993110--31993163 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
31993100 TTAAAAACCA
* *
31993110 TAAAGCCTAATTTAATTTATTT
1 TAAACCCTAATTTAATTTATCT
31993132 TAAACCCTAATTTAATTTATCT
1 TAAACCCTAATTTAATTTATCT
*
31993154 AAAACCCTAA
1 TAAACCCTAA
31993164 AACTTTAGTC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.41, C:0.17, G:0.02, T:0.41
Consensus pattern (22 bp):
TAAACCCTAATTTAATTTATCT
Found at i:31993181 original size:86 final size:80
Alignment explanation
Indices: 31993046--31993220 Score: 206
Period size: 86 Copynumber: 2.1 Consensus size: 80
31993036 ATTTTAACCA
* * *
31993046 AAAACCCTAATTTAATTTATCTAAAACCCTATAACCCTAATTTACTTAATCTATTTAAAAACCAT
1 AAAACCCTAATTTAATTTATCTAAAACCCTAAAACCCTAATCTAATTAA--T-TTT--AAACCA-
* *
31993111 AAAGCCTAATTTAATTTATTT
60 AAACCCTAATTTAATTTATCT
* ** * *
31993132 TAAACCCTAATTTAATTTATCTAAAACCCTAAAACTTTAGTCTAATTAATTTTAACCCAAAACCC
1 AAAACCCTAATTTAATTTATCTAAAACCCTAAAACCCTAATCTAATTAATTTTAAACCAAAACCC
31993197 TAATTTAATTTATCT
66 TAATTTAATTTATCT
31993212 AAAACCCTA
1 AAAACCCTA
31993221 GAACTCTAAT
Statistics
Matches: 78, Mismatches: 11, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
80 27 0.35
81 5 0.06
83 3 0.04
84 1 0.01
86 42 0.54
ACGTcount: A:0.42, C:0.20, G:0.01, T:0.37
Consensus pattern (80 bp):
AAAACCCTAATTTAATTTATCTAAAACCCTAAAACCCTAATCTAATTAATTTTAAACCAAAACCC
TAATTTAATTTATCT
Found at i:31993218 original size:144 final size:139
Alignment explanation
Indices: 31993030--31993410 Score: 514
Period size: 144 Copynumber: 2.7 Consensus size: 139
31993020 AACCGTAATT
* *
31993030 TAATTAATTTTAACCAAAAACCCTAATTTAATTTATCTAAAACCCTATAACCCTAATTTACTTAA
1 TAATTAATTTTAACCCAAAACCCTAATTTAATTTATCTAAAACCCTAAAACCCTAATTTACTTAA
31993095 TCTATTTAAAAACCATAAAGCCTAATTTAATTTATTTTAAACCCTAATTTAATTTATCT-AAAAC
66 TCTATTTAAAAACCATAAA-CCTAATTTAATTTATTTTAAACCCTAATTTAATTTAT-TGAAAAC
31993159 CCTAAAACTTTAGTC
129 CCT--AA-TTTA-TC
* *
31993174 TAATTAATTTTAACCCAAAACCCTAATTTAATTTATCTAAAACCCTAGAACTCTAATTTACTTAA
1 TAATTAATTTTAACCCAAAACCCTAATTTAATTTATCTAAAACCCTAAAACCCTAATTTACTTAA
*
31993239 TCTATTTAAAAACCATAAACCTTAATTTAATTTATTTTAAACCCTTATTTAATTTATTGAAAACC
66 TCTATTTAAAAACCATAAACC-TAATTTAATTTATTTTAAACCCTAATTTAATTTATTGAAAACC
*
31993304 CTAATTTATG
130 CTAATTTATC
* * * * * * *
31993314 TAACCT-ATTTAAAAACTCTAAACCCTAATTTAATTTATTTTAAACCCTAAAACCCTAATTTACA
1 TAA-TTAATTT--TAACCCAAAACCCTAATTTAATTTATCTAAAACCCTAAAACCCTAATTTACT
**
31993378 TAATCTATTTAAAAACTTTAAACCCTAATTTAA
63 TAATCTATTTAAAAACCATAAA-CCTAATTTAA
31993411 ATAATTTTTA
Statistics
Matches: 215, Mismatches: 16, Indels: 14
0.88 0.07 0.06
Matches are distributed among these distances:
140 8 0.04
141 5 0.02
142 74 0.34
143 5 0.02
144 123 0.57
ACGTcount: A:0.41, C:0.18, G:0.01, T:0.39
Consensus pattern (139 bp):
TAATTAATTTTAACCCAAAACCCTAATTTAATTTATCTAAAACCCTAAAACCCTAATTTACTTAA
TCTATTTAAAAACCATAAACCTAATTTAATTTATTTTAAACCCTAATTTAATTTATTGAAAACCC
TAATTTATC
Found at i:31993281 original size:22 final size:22
Alignment explanation
Indices: 31993254--31993311 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
31993244 TTAAAAACCA
*
31993254 TAAACCTTAATTTAATTTATTT
1 TAAACCTTAATTTAATTTATTG
31993276 TAAACCCTT-ATTTAATTTATTG
1 TAAA-CCTTAATTTAATTTATTG
* *
31993298 AAAACCCTAATTTA
1 TAAACCTTAATTTA
31993312 TGTAACCTAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
21 3 0.10
22 24 0.77
23 4 0.13
ACGTcount: A:0.38, C:0.14, G:0.02, T:0.47
Consensus pattern (22 bp):
TAAACCTTAATTTAATTTATTG
Found at i:31993415 original size:34 final size:34
Alignment explanation
Indices: 31993299--31993415 Score: 125
Period size: 34 Copynumber: 3.6 Consensus size: 34
31993289 AATTTATTGA
** * *
31993299 AAACCCTAATTTATGTAACCTATTTAAAAACTCT
1 AAACCCTAATTTAAATAATCTATTTAAAAACTTT
* * * *
31993333 AAACCCTAATTT-AAT--T-TATTTTAAACCCTA
1 AAACCCTAATTTAAATAATCTATTTAAAAACTTT
*
31993363 AAACCCTAATTTACATAATCTATTTAAAAACTTT
1 AAACCCTAATTTAAATAATCTATTTAAAAACTTT
31993397 AAACCCTAATTTAAATAAT
1 AAACCCTAATTTAAATAAT
31993416 TTTTATAAAA
Statistics
Matches: 65, Mismatches: 14, Indels: 8
0.75 0.16 0.09
Matches are distributed among these distances:
30 21 0.32
31 2 0.03
33 2 0.03
34 40 0.62
ACGTcount: A:0.44, C:0.19, G:0.01, T:0.37
Consensus pattern (34 bp):
AAACCCTAATTTAAATAATCTATTTAAAAACTTT
Found at i:31993418 original size:64 final size:64
Alignment explanation
Indices: 31993298--31993418 Score: 188
Period size: 64 Copynumber: 1.9 Consensus size: 64
31993288 TAATTTATTG
** * *
31993298 AAAACCCTAATTTATGTAACCTATTTAAAAACTCTAAACCCTAATTTAATTTATTTTAAACCCT
1 AAAACCCTAATTTACATAACCTATTTAAAAACTCTAAACCCTAATTTAAATAATTTTAAACCCT
* *
31993362 AAAACCCTAATTTACATAATCTATTTAAAAACTTTAAACCCTAATTTAAATAATTTT
1 AAAACCCTAATTTACATAACCTATTTAAAAACTCTAAACCCTAATTTAAATAATTTT
31993419 TATAAAATGA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 51 1.00
ACGTcount: A:0.43, C:0.18, G:0.01, T:0.38
Consensus pattern (64 bp):
AAAACCCTAATTTACATAACCTATTTAAAAACTCTAAACCCTAATTTAAATAATTTTAAACCCT
Found at i:31993814 original size:37 final size:37
Alignment explanation
Indices: 31993767--31993842 Score: 116
Period size: 38 Copynumber: 2.0 Consensus size: 37
31993757 TTAATCTTTG
* * *
31993767 TTTAAAAATTTTAATGAAATTCTTTAAAAAATAATTAA
1 TTTAAAATTTTTAATGAAAATATTTAAAAAA-AATTAA
31993805 TTTAAAATTTTTAATGAAAATATTTAAAAAAAATTAA
1 TTTAAAATTTTTAATGAAAATATTTAAAAAAAATTAA
31993842 T
1 T
31993843 GAATTGAAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
37 7 0.20
38 28 0.80
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (37 bp):
TTTAAAATTTTTAATGAAAATATTTAAAAAAAATTAA
Found at i:31994356 original size:23 final size:23
Alignment explanation
Indices: 31994313--31994357 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
31994303 TTTAAAATAT
*
31994313 AAAAATTATTAAAAAAATTAAAC
1 AAAAATCATTAAAAAAATTAAAC
*
31994336 AAAAATCA-TAAAATAACTTAAA
1 AAAAATCATTAAAA-AAATTAAA
31994358 AATTAAAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (23 bp):
AAAAATCATTAAAAAAATTAAAC
Found at i:32007249 original size:41 final size:42
Alignment explanation
Indices: 32007186--32007334 Score: 167
Period size: 41 Copynumber: 3.5 Consensus size: 42
32007176 TAAGATTACG
* *
32007186 TGTAACACCATATCTGGGATATGGCATCGATATGAGGCTTCA
1 TGTAAGACCATATCTGGGATATGACATCGATATGAGGCTTCA
* **
32007228 TGT-AGACCATATCTGGGATATGACATCGATATGAGACTTTT
1 TGTAAGACCATATCTGGGATATGACATCGATATGAGGCTTCA
* * * * * *
32007269 TGTAAGACTATAGCTGGGCTATTGACATTGATAGGA-GATTACA
1 TGTAAGACCATATCTGGGATA-TGACATCGATATGAGGCTT-CA
32007312 TGTAAGACCATATCTGGGATATG
1 TGTAAGACCATATCTGGGATATG
32007335 GCATTGGTAT
Statistics
Matches: 87, Mismatches: 17, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
41 36 0.41
42 21 0.24
43 30 0.34
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGACATCGATATGAGGCTTCA
Found at i:32014675 original size:27 final size:27
Alignment explanation
Indices: 32014644--32014699 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
32014634 CCAATGTCAG
*
32014644 ATCAATACATTCCTCCACTACACCAGT
1 ATCAATACATCCCTCCACTACACCAGT
*
32014671 ATCAATACATCCCTCCACTACACTAGT
1 ATCAATACATCCCTCCACTACACCAGT
32014698 AT
1 AT
32014700 AACTCGGTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.34, C:0.36, G:0.04, T:0.27
Consensus pattern (27 bp):
ATCAATACATCCCTCCACTACACCAGT
Found at i:32017112 original size:90 final size:90
Alignment explanation
Indices: 32016959--32017144 Score: 363
Period size: 90 Copynumber: 2.1 Consensus size: 90
32016949 CTTGATAACC
32016959 ATACCATGTTCTAAGTTACATTTTCTTCATTTTACCCTATCACATCATATGCATATATCCTATCA
1 ATACCATGTTCTAAGTTACATTTTCTTCATTTTACCCTATCACATCATATGCATATATCCTATCA
32017024 TGGAAATGAATTAATATACATATAT
66 TGGAAATGAATTAATATACATATAT
*
32017049 ATACCATGTTCTAAGTTACATTTTCTTTATTTTACCCTATCACATCATATGCATATATCCTATCA
1 ATACCATGTTCTAAGTTACATTTTCTTCATTTTACCCTATCACATCATATGCATATATCCTATCA
32017114 TGGAAATGAATTAATATACATATAT
66 TGGAAATGAATTAATATACATATAT
32017139 ATACCA
1 ATACCA
32017145 ACCATAATTT
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 95 1.00
ACGTcount: A:0.35, C:0.19, G:0.06, T:0.40
Consensus pattern (90 bp):
ATACCATGTTCTAAGTTACATTTTCTTCATTTTACCCTATCACATCATATGCATATATCCTATCA
TGGAAATGAATTAATATACATATAT
Found at i:32018490 original size:43 final size:43
Alignment explanation
Indices: 32018384--32018562 Score: 157
Period size: 45 Copynumber: 4.2 Consensus size: 43
32018374 AATGCTATCT
* * *
32018384 CATATCGATGCC-ACTGTCCCAGACAGGGTCTTACACG-AATCA
1 CATATCAATGCCAAC-GTCCCAGACATGGTCTTACACGAAAACA
* * * * * * *
32018426 AATA-CAATGCTAATGTCCTAGACATGGTCTTACTCGTAATCA
1 CATATCAATGCCAACGTCCCAGACATGGTCTTACACGAAAACA
** * **
32018468 CATATTGATGCCAACGTCCTAGATGTGGTCTTACACGAAAACA
1 CATATCAATGCCAACGTCCCAGACATGGTCTTACACGAAAACA
**
32018511 CATATATCAATGCCAACGTCCCAGATGTGGTCTTACACGAAAACA
1 C--ATATCAATGCCAACGTCCCAGACATGGTCTTACACGAAAACA
32018556 CATATCA
1 CATATCA
32018563 GAATCCTATT
Statistics
Matches: 112, Mismatches: 20, Indels: 9
0.79 0.14 0.06
Matches are distributed among these distances:
41 24 0.21
42 12 0.11
43 36 0.32
45 40 0.36
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (43 bp):
CATATCAATGCCAACGTCCCAGACATGGTCTTACACGAAAACA
Found at i:32018537 original size:45 final size:43
Alignment explanation
Indices: 32018450--32018560 Score: 159
Period size: 45 Copynumber: 2.5 Consensus size: 43
32018440 GTCCTAGACA
* * * * *
32018450 TGGTCTTACTCGTAATCACATATTGATGCCAACGTCCTAGATG
1 TGGTCTTACACGAAAACACATATTAATGCCAACGTCCCAGATG
32018493 TGGTCTTACACGAAAACACATATATCAATGCCAACGTCCCAGATG
1 TGGTCTTACACGAAAACACATAT-T-AATGCCAACGTCCCAGATG
32018538 TGGTCTTACACGAAAACACATAT
1 TGGTCTTACACGAAAACACATAT
32018561 CAGAATCCTA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
43 20 0.33
44 1 0.02
45 40 0.66
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.27
Consensus pattern (43 bp):
TGGTCTTACACGAAAACACATATTAATGCCAACGTCCCAGATG
Found at i:32022946 original size:26 final size:26
Alignment explanation
Indices: 32022900--32022984 Score: 84
Period size: 26 Copynumber: 3.3 Consensus size: 26
32022890 GCCATTTCGA
*
32022900 GAAGCTC-CAGAGAGCCATTAATCAG
1 GAAGCTCACAAAGAGCCATTAATCAG
** *
32022925 GAAGCTCACAAAGAGCTTTTAATCGG
1 GAAGCTCACAAAGAGCCATTAATCAG
* *
32022951 GAAGCTCATATAGAGCCATATAA-CAG
1 GAAGCTCACAAAGAGCCAT-TAATCAG
*
32022977 GACGCTCA
1 GAAGCTCA
32022985 TAAGAGCTGG
Statistics
Matches: 48, Mismatches: 10, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
25 7 0.15
26 38 0.79
27 3 0.06
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.19
Consensus pattern (26 bp):
GAAGCTCACAAAGAGCCATTAATCAG
Found at i:32023462 original size:10 final size:11
Alignment explanation
Indices: 32023443--32023472 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
32023433 AATTTAATAA
32023443 AATTCACATTC
1 AATTCACATTC
32023454 AATTC-CATTC
1 AATTCACATTC
32023464 AATTCACAT
1 AATTCACAT
32023473 CTTAGGCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.37, C:0.27, G:0.00, T:0.37
Consensus pattern (11 bp):
AATTCACATTC
Found at i:32025081 original size:67 final size:67
Alignment explanation
Indices: 32024970--32025133 Score: 256
Period size: 67 Copynumber: 2.4 Consensus size: 67
32024960 GTCTTCTTGT
* * *
32024970 TTACACCTGTAACCCTATGTTTAATGTCCTGGCAAACTCCTCATGTTGCCATAATTGAGCTAAGG
1 TTACACATGTAACCCTATGTTTAATGTCCTAGCAAACTCCTCATGTTGCCATAACTGAGCTAAGG
32025035 TC
66 TC
* * *
32025037 TTACACATGTAACCCTATGTTTAATGTTCTAGCAAACTCTTCATGTTGCCATAGCTGAGCTAAGG
1 TTACACATGTAACCCTATGTTTAATGTCCTAGCAAACTCCTCATGTTGCCATAACTGAGCTAAGG
32025102 TC
66 TC
* *
32025104 TTACACATGTAACCTTATATTTAATGTCCT
1 TTACACATGTAACCCTATGTTTAATGTCCT
32025134 TGCGGACTAC
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
67 88 1.00
ACGTcount: A:0.27, C:0.23, G:0.15, T:0.35
Consensus pattern (67 bp):
TTACACATGTAACCCTATGTTTAATGTCCTAGCAAACTCCTCATGTTGCCATAACTGAGCTAAGG
TC
Found at i:32029761 original size:43 final size:43
Alignment explanation
Indices: 32029700--32029971 Score: 377
Period size: 43 Copynumber: 6.3 Consensus size: 43
32029690 TTATGTGGAA
* * *
32029700 AAACGCCGCTAAAAAGAACATGACTTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCT--AAAGAACATGACCTTTAGCGGCCCCTTTCCCAC
*
32029745 AAATC-TCGCTAAAGAACATGACCTTTAGCGGCCCCTTTCCCAC
1 AAA-CGCCGCTAAAGAACATGACCTTTAGCGGCCCCTTTCCCAC
* * * *
32029788 AAACGCCGCTAAAGAACATGATCTTTAGCAGCACTTTTCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCCCCTTTCCCAC
*
32029831 AAAC-CCGCTGAAGAACATGACCTTTAGCGGCCCCTTTCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCCCCTTTCCCAC
*
32029873 AAACGCCGCTAAAGAACATGATCTTTAGCGGCCCCTTTCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCCCCTTTCCCAC
* * *
32029916 AAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTTCCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCCCCTTTCCCAC
*
32029959 AAACGCTGCTAAA
1 AAACGCCGCTAAA
32029972 AGTTACGTTC
Statistics
Matches: 203, Mismatches: 21, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
42 38 0.19
43 157 0.77
45 7 0.03
46 1 0.00
ACGTcount: A:0.30, C:0.33, G:0.16, T:0.21
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCCCCTTTCCCAC
Found at i:32029870 original size:85 final size:85
Alignment explanation
Indices: 32029700--32029971 Score: 402
Period size: 85 Copynumber: 3.2 Consensus size: 85
32029690 TTATGTGGAA
* *
32029700 AAACGCCGCTAAAAAGAACATGA-CTTTTAGCGGCGCTTTTCCCACAAATCTCGCTAAAGAACAT
1 AAACGCCGCT--AAAGAACATGATC-TTTAGCGGCACTTTTCCCACAAA-CCCGCTAAAGAACAT
32029764 GACCTTTAGCGGCCCCTTTCCCAC
62 GACCTTTAGCGGCCCCTTTCCCAC
* *
32029788 AAACGCCGCTAAAGAACATGATCTTTAGCAGCACTTTTCCCACAAACCCGCTGAAGAACATGACC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCACTTTTCCCACAAACCCGCTAAAGAACATGACC
32029853 TTTAGCGGCCCCTTTCCCAC
66 TTTAGCGGCCCCTTTCCCAC
* *
32029873 AAACGCCGCTAAAGAACATGATCTTTAGCGGCCCCTTTCCCACAAACGCCGCTAAAGAACATGAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCACTTTTCCCACAAAC-CCGCTAAAGAACATGAC
* * *
32029938 CTTTAGCGACGCTTTTCCCAC
65 CTTTAGCGGCCCCTTTCCCAC
*
32029959 AAACGCTGCTAAA
1 AAACGCCGCTAAA
32029972 AGTTACGTTC
Statistics
Matches: 170, Mismatches: 12, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
85 81 0.48
86 78 0.46
87 1 0.01
88 10 0.06
ACGTcount: A:0.30, C:0.33, G:0.16, T:0.21
Consensus pattern (85 bp):
AAACGCCGCTAAAGAACATGATCTTTAGCGGCACTTTTCCCACAAACCCGCTAAAGAACATGACC
TTTAGCGGCCCCTTTCCCAC
Found at i:32029942 original size:128 final size:128
Alignment explanation
Indices: 32029713--32029962 Score: 405
Period size: 128 Copynumber: 2.0 Consensus size: 128
32029703 CGCCGCTAAA
* * * *
32029713 AAGAACATGACTTTTAGCGGCGCTTTTCCCACAAATCTCGCTAAAGAACATGACCTTTAGCGGCC
1 AAGAACATGACCTTTAGCGGCCCCTTTCCCACAAATCCCGCTAAAGAACATGACCTTTAGCGGCC
*
32029778 CCTTTCCCACAAACGCCGCTAAAGAACATGATCTTTAGC-AGCACTTTTCCCACAAACCCGCTG
66 CCTTTCCCACAAACGCCGCTAAAGAACATGACCTTTAGCGA-CACTTTTCCCACAAACCCGCTG
*
32029841 AAGAACATGACCTTTAGCGGCCCCTTTCCCACAAA-CGCCGCTAAAGAACATGATCTTTAGCGGC
1 AAGAACATGACCTTTAGCGGCCCCTTTCCCACAAATC-CCGCTAAAGAACATGACCTTTAGCGGC
*
32029905 CCCTTTCCCACAAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTTCCCACAAAC
65 CCCTTTCCCACAAACGCCGCTAAAGAACATGACCTTTAGCGACACTTTTCCCACAAAC
32029963 GCTGCTAAAA
Statistics
Matches: 113, Mismatches: 7, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
127 1 0.01
128 111 0.98
129 1 0.01
ACGTcount: A:0.29, C:0.33, G:0.16, T:0.22
Consensus pattern (128 bp):
AAGAACATGACCTTTAGCGGCCCCTTTCCCACAAATCCCGCTAAAGAACATGACCTTTAGCGGCC
CCTTTCCCACAAACGCCGCTAAAGAACATGACCTTTAGCGACACTTTTCCCACAAACCCGCTG
Found at i:32031584 original size:27 final size:27
Alignment explanation
Indices: 32031554--32031645 Score: 103
Period size: 27 Copynumber: 3.4 Consensus size: 27
32031544 ATTACCAAAG
* *
32031554 TACCCTCAATTTATAGAATCACTATTT
1 TACCCTCGATTTACAGAATCACTATTT
* * *
32031581 TACCCTTGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATCACTATTT
* * **
32031608 TACCCTCGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATCACTATTT
32031635 TACCCTCGATT
1 TACCCTCGATT
32031646 GTGAAATTAC
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATCACTATTT
Found at i:32031718 original size:54 final size:54
Alignment explanation
Indices: 32031635--32031775 Score: 162
Period size: 54 Copynumber: 2.6 Consensus size: 54
32031625 ATTACCGTTT
* * *
32031635 TACCCTCGA-TTGTGAAATTACTAAAATACCCCTA-TAGGGT-AGAATTACCAAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGT-GGGTGA-AATTACCAAAA
* * * ** *
32031688 TACCCTTAGTTTGTAAAATTACCAAAATACCACTAGTTTGTGAAATTACCGAAA
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTGGGTGAAATTACCAAAA
32031742 TACCCTCAATTTGTAAAATTACCAAAATACCCCT
1 TACCCTCAATTTGTAAAATTACCAAAATACCCCT
32031776 GATTTACAAA
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
53 6 0.08
54 65 0.89
55 2 0.03
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (54 bp):
TACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTGGGTGAAATTACCAAAA
Found at i:32031780 original size:27 final size:26
Alignment explanation
Indices: 32031644--32031798 Score: 141
Period size: 27 Copynumber: 5.8 Consensus size: 26
32031634 TTACCCTCGA
* *
32031644 TTGTGAAATTACTAAAATACCCCTAT
1 TTGTAAAATTACCAAAATACCCCTAT
** * *
32031670 AGGGTAGAATTACCAAAATACCCTTAGT
1 -TTGTAAAATTACCAAAATACCCCTA-T
*
32031698 TTGTAAAATTACCAAAATACCACTAGT
1 TTGTAAAATTACCAAAATACCCCTA-T
* * *
32031725 TTGTGAAATTACCGAAATACCCTCAAT
1 TTGTAAAATTACCAAAATACCC-CTAT
32031752 TTGTAAAATTACCAAAATACCCCTGAT
1 TTGTAAAATTACCAAAATACCCCT-AT
**
32031779 TTACAAAATTA-CAGAAATAC
1 TTGTAAAATTACCA-AAATAC
32031799 TCTTGACTTT
Statistics
Matches: 104, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
26 3 0.03
27 98 0.94
28 3 0.03
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.29
Consensus pattern (26 bp):
TTGTAAAATTACCAAAATACCCCTAT
Found at i:32031788 original size:54 final size:54
Alignment explanation
Indices: 32031610--32031857 Score: 160
Period size: 54 Copynumber: 4.6 Consensus size: 54
32031600 TACTGTTTTA
*** * * *
32031610 CCCTCGATTTACAAAATTACCGTTTTACCCTCGA-TTGTGAAATTACTAAAATAC
1 CCCT-GATTTACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATAC
**** * * * *
32031664 CCCT-ATAGGGTAGAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATAC
1 CCCTGAT-TTACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATAC
* ***
32031718 CACT-AGTTTGTGAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATAC
1 CCCTGA-TTTACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATAC
* * * * * **
32031772 CCCTGATTTACAAAATTACAGAAATACTCTTGACTTTCTAAAAATTATAAAAATAC
1 CCCTGATTTACAAAATTACCGAAATAC-CCTCAATTTGT-AAAATTACCAAAATAC
** * **
32031828 CATTGGTTTACAAAATTATTGAAATACCCT
1 CCCTGATTTACAAAATTACCGAAATACCCT
32031858 TGGTTTGTAG
Statistics
Matches: 149, Mismatches: 39, Indels: 11
0.75 0.20 0.06
Matches are distributed among these distances:
52 2 0.01
53 14 0.09
54 86 0.58
55 11 0.07
56 36 0.24
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (54 bp):
CCCTGATTTACAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATAC
Found at i:32031852 original size:27 final size:27
Alignment explanation
Indices: 32031812--32031863 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
32031802 TGACTTTCTA
32031812 AAAATTATAAAAATACCATTGGTTTAC
1 AAAATTATAAAAATACCATTGGTTTAC
** *
32031839 AAAATTATTGAAATACCCTTGGTTT
1 AAAATTATAAAAATACCATTGGTTT
32031864 GTAGATTTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.42, C:0.12, G:0.10, T:0.37
Consensus pattern (27 bp):
AAAATTATAAAAATACCATTGGTTTAC
Found at i:32031981 original size:27 final size:27
Alignment explanation
Indices: 32031894--32031981 Score: 88
Period size: 27 Copynumber: 3.3 Consensus size: 27
32031884 TTGTAGGATG
* * *
32031894 AAATGACTAAAATACCCCT-AATAGGTA
1 AAATGACCATAATACCCCTGTAT-GGTA
* * * *
32031921 AAAAGACCGTAAAACCCCTGTAGGGTA
1 AAATGACCATAATACCCCTGTATGGTA
*
32031948 AAGTGACCATAATACCCCTGTATGGTA
1 AAATGACCATAATACCCCTGTATGGTA
32031975 AAATGAC
1 AAATGAC
32031982 GAATATGCCC
Statistics
Matches: 47, Mismatches: 13, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
27 46 0.98
28 1 0.02
ACGTcount: A:0.42, C:0.20, G:0.17, T:0.20
Consensus pattern (27 bp):
AAATGACCATAATACCCCTGTATGGTA
Found at i:32032829 original size:25 final size:25
Alignment explanation
Indices: 32032791--32032860 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
32032781 AGGAAATGCT
* *
32032791 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
*
32032816 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
32032841 AAAAAGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCCAGTT
32032861 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:32032862 original size:24 final size:25
Alignment explanation
Indices: 32032791--32032873 Score: 87
Period size: 25 Copynumber: 3.4 Consensus size: 25
32032781 AGGAAATGCT
* * * *
32032791 AAAAGGGCTATGCCCCAGTTTACCG
1 AAAAAGGCTTTGCCCCAGTTTATCA
*
32032816 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAAGGCTTTGCCCCAGTTTATCA
* *
32032841 AAAAAGGCTTTGCCCTAG-TTATTA
1 AAAAAGGCTTTGCCCCAGTTTATCA
*
32032865 AAAGAGGCT
1 AAAAAGGCT
32032874 AGGCCTTCAG
Statistics
Matches: 51, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
24 13 0.25
25 38 0.75
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.25
Consensus pattern (25 bp):
AAAAAGGCTTTGCCCCAGTTTATCA
Found at i:32033120 original size:31 final size:30
Alignment explanation
Indices: 32033082--32033146 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 30
32033072 CAGCCAATGG
* * *
32033082 TATGATTTATGAAAATGCTTTGGCCTAGTGA
1 TATGATTTATGAAAAGGCTTAGGCCCAGT-A
32033113 TATGATTTATGAAAAGGCTTAGGCCCAGTA
1 TATGATTTATGAAAAGGCTTAGGCCCAGTA
32033143 TATG
1 TATG
32033147 TCGAGACTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
30 5 0.16
31 26 0.84
ACGTcount: A:0.31, C:0.11, G:0.23, T:0.35
Consensus pattern (30 bp):
TATGATTTATGAAAAGGCTTAGGCCCAGTA
Found at i:32037852 original size:14 final size:14
Alignment explanation
Indices: 32037835--32037863 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
32037825 GGATGAGAAA
32037835 GAAAAGGGAATTGG
1 GAAAAGGGAATTGG
32037849 GAAAAGGGAATTGG
1 GAAAAGGGAATTGG
32037863 G
1 G
32037864 GGAGAGAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.45, T:0.14
Consensus pattern (14 bp):
GAAAAGGGAATTGG
Found at i:32037890 original size:68 final size:73
Alignment explanation
Indices: 32037802--32037947 Score: 203
Period size: 68 Copynumber: 2.1 Consensus size: 73
32037792 TTCGGGTATA
* * * *
32037802 AAATAGAAGAATAGGTTGAGAAAGGATGAGAAAGAAAAGGGAATTG-GGAA-AAG-GG-AATT-G
1 AAATAGAAGAATAGGCTGAGAAAGGATGAGAAAGAAAAGGAAATCGAGAAAGAAGAGGAAATTGG
32037862 GGGGAGAG
66 GGGGAGAG
* *
32037870 AAATAGAAGAATAGGCTGAGAATGGTTGAGAAAGAAAAGGAAATCGAGAAAGAAGAGGAAATTGG
1 AAATAGAAGAATAGGCTGAGAAAGGATGAGAAAGAAAAGGAAATCGAGAAAGAAGAGGAAATTGG
32037935 GGGGAGAG
66 GGGGAGAG
32037943 AAATA
1 AAATA
32037948 AAACGGCATC
Statistics
Matches: 67, Mismatches: 6, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
68 41 0.61
69 3 0.04
70 3 0.04
71 2 0.03
72 4 0.06
73 14 0.21
ACGTcount: A:0.49, C:0.01, G:0.37, T:0.13
Consensus pattern (73 bp):
AAATAGAAGAATAGGCTGAGAAAGGATGAGAAAGAAAAGGAAATCGAGAAAGAAGAGGAAATTGG
GGGGAGAG
Found at i:32037920 original size:18 final size:18
Alignment explanation
Indices: 32037897--32037931 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
32037887 GAGAATGGTT
32037897 GAGAAAGAAAAGGAAATC
1 GAGAAAGAAAAGGAAATC
*
32037915 GAGAAAGAAGAGGAAAT
1 GAGAAAGAAAAGGAAAT
32037932 TGGGGGGAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.60, C:0.03, G:0.31, T:0.06
Consensus pattern (18 bp):
GAGAAAGAAAAGGAAATC
Found at i:32038122 original size:40 final size:40
Alignment explanation
Indices: 32038038--32038124 Score: 104
Period size: 40 Copynumber: 2.2 Consensus size: 40
32038028 TTTTTCTGTG
* * * * *
32038038 TTTTTATCATAAATACCGTTATTGCTTGCCTTTTGTAACG
1 TTTTTATCATAAATACCGCTAATACTTGACTTTTGTAACA
*
32038078 TTTTTATCATAAATACCGCTAATACTTGACTTTT-TTACAA
1 TTTTTATCATAAATACCGCTAATACTTGACTTTTGTAAC-A
32038118 TTTTTAT
1 TTTTTAT
32038125 ATTGAATTAT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
39 3 0.08
40 37 0.93
ACGTcount: A:0.26, C:0.16, G:0.08, T:0.49
Consensus pattern (40 bp):
TTTTTATCATAAATACCGCTAATACTTGACTTTTGTAACA
Found at i:32038482 original size:18 final size:17
Alignment explanation
Indices: 32038459--32038499 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
32038449 TTATCTCTTA
32038459 AATAATTTAAACTATATT
1 AATAATTTAAA-TATATT
*
32038477 AATAATTTTAATATATT
1 AATAATTTAAATATATT
32038494 AA-AATT
1 AATAATT
32038500 AGTATTATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 4 0.18
17 8 0.36
18 10 0.45
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (17 bp):
AATAATTTAAATATATT
Found at i:32039226 original size:40 final size:40
Alignment explanation
Indices: 32039182--32039370 Score: 195
Period size: 40 Copynumber: 4.8 Consensus size: 40
32039172 AATATTTGTT
* * *
32039182 GCGGCATTTTTGATAAAGCGCCGCTAAAGCTCGATCTATA
1 GCGGCATTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
* * * * * *
32039222 GCGGCGTTTTTCAAAAAGTGCTGCTAATGGTCGTTTTATA
1 GCGGCATTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
* * * *
32039262 GCGGC-GTTTCCTAAAAAGCGCTGCTAATGCTCAATCTATA
1 GCGGCATTTTTC-AAAAAGCGCCGCTAATGCTCGATCTATA
* *
32039302 GCGG-AGTTTTTC-AAAAGCACCGCTAACGCTCGATCTATA
1 GCGGCA-TTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
*
32039341 GCGGCATTTTTCAAAAAGCACCGCTAATGC
1 GCGGCATTTTTCAAAAAGCGCCGCTAATGC
32039371 CACTAAATCT
Statistics
Matches: 121, Mismatches: 23, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
39 37 0.31
40 80 0.66
41 4 0.03
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.29
Consensus pattern (40 bp):
GCGGCATTTTTCAAAAAGCGCCGCTAATGCTCGATCTATA
Found at i:32040025 original size:22 final size:22
Alignment explanation
Indices: 32039997--32040041 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
32039987 TCAAAGGTGT
32039997 TTGTCGGGACTAAAATCATGAA
1 TTGTCGGGACTAAAATCATGAA
32040019 TTGTCGGGACTAAAATCATGAA
1 TTGTCGGGACTAAAATCATGAA
32040041 T
1 T
32040042 CTCTGAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (22 bp):
TTGTCGGGACTAAAATCATGAA
Found at i:32040485 original size:61 final size:60
Alignment explanation
Indices: 32040304--32040501 Score: 202
Period size: 61 Copynumber: 3.2 Consensus size: 60
32040294 GAAGAAAAGT
* * *
32040304 CTTTGTGGCAATACTCTAGACAGGAAAGCCTTTATAGCGAGTACTAAATGTAAAGGA-AAGC
1 CTTTGTGGCAATACTCTAGACAAGAAAGCCTTT-TGGCGAGTACTAGATGTAAAGGACAA-C
* * * * * *
32040365 ATTTGTGGCAATACTTTGGACAAGAAAAGCCTTTTGCCGAGTACTAGATGTACATGACAAC
1 CTTTGTGGCAATACTCTAGACAAG-AAAGCCTTTTGGCGAGTACTAGATGTAAAGGACAAC
* * * *
32040426 CTTTGTAGCAATACTCTAGATAAGAAAGCCTTTGTGGTGAGTAC-AGGATATAAAGGACAAC
1 CTTTGTGGCAATACTCTAGACAAGAAAGCCTTT-TGGCGAGTACTA-GATGTAAAGGACAAC
* *
32040487 CTTTTTGGTAATACT
1 CTTTGTGGCAATACT
32040502 GGATGTAAAG
Statistics
Matches: 111, Mismatches: 22, Indels: 8
0.79 0.16 0.06
Matches are distributed among these distances:
60 10 0.09
61 90 0.81
62 11 0.10
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (60 bp):
CTTTGTGGCAATACTCTAGACAAGAAAGCCTTTTGGCGAGTACTAGATGTAAAGGACAAC
Found at i:32043994 original size:22 final size:22
Alignment explanation
Indices: 32043930--32043997 Score: 91
Period size: 26 Copynumber: 2.9 Consensus size: 22
32043920 ATTGGCATTG
32043930 ATACGAGATTACATGTAAGACC
1 ATACGAGATTACATGTAAGACC
*
32043952 ATATCTGGGATATGACATGTAAGACC
1 ATA-C-GAGAT-T-ACATGTAAGACC
32043978 ATACGAGATTACATGTAAGA
1 ATACGAGATTACATGTAAGA
32043998 TCATTATTTT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
22 13 0.32
23 2 0.05
24 8 0.20
25 2 0.05
26 15 0.38
ACGTcount: A:0.40, C:0.15, G:0.21, T:0.25
Consensus pattern (22 bp):
ATACGAGATTACATGTAAGACC
Found at i:32046466 original size:20 final size:21
Alignment explanation
Indices: 32046427--32046466 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
32046417 AAGGGCTATT
*
32046427 TTGTAAAGTTTGTAAAATAAG
1 TTGTAAAGTGTGTAAAATAAG
*
32046448 TTGTAAA-TGTGTGAAATAA
1 TTGTAAAGTGTGTAAAATAA
32046467 TTGAACTTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.42, C:0.00, G:0.20, T:0.38
Consensus pattern (21 bp):
TTGTAAAGTGTGTAAAATAAG
Found at i:32047202 original size:46 final size:46
Alignment explanation
Indices: 32047128--32047395 Score: 171
Period size: 46 Copynumber: 5.7 Consensus size: 46
32047118 TGATATGTGT
* *
32047128 GCTAGTGTAAGACATATCTGGGACATGCATCGGCCACATT-ATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTGACGAGA
* * *
32047174 GCTAATGTAAGACATGTTTGGGAAATGCATCGG--CATTGAGACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCATT--GACGAGA
*
32047220 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATATG-C-A-A
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCC-C---AT-TGACGAGA
* *
32047268 GCTAGTGTAAGACCTGTCTGGGACATGGCATCGG--C-TTGAC-ATGT
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCCATTGACGA-GA
* * * * * * *
32047312 G-TCAGTGTAAGACCTGTCTAGGACATGGCATCGACACTGATAGATGAGT
1 GCT-AGTGTAAGACATGTCTGGGACAT-GCATCGGC-C-CATTGACGAGA
* *
32047361 GCCAGTGTAAGACCTGTCTGGGACATGGCATCGGC
1 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGC
32047396 TTTGATATAT
Statistics
Matches: 180, Mismatches: 20, Indels: 41
0.75 0.08 0.17
Matches are distributed among these distances:
41 2 0.01
42 3 0.02
43 5 0.03
44 30 0.17
46 64 0.36
48 25 0.14
49 45 0.25
50 2 0.01
51 1 0.01
52 2 0.01
53 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTGACGAGA
Found at i:32047318 original size:92 final size:93
Alignment explanation
Indices: 32047131--32047494 Score: 305
Period size: 92 Copynumber: 3.9 Consensus size: 93
32047121 TATGTGTGCT
* * * * * *
32047131 AGTGTAAGACATATCTGGGACAT-GCATCGGCCAC-ATTATGAGAGCTAATGTAAGACATGTTTG
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAATATGAGAGCTAGTGTAAGACCTGTCTG
* *
32047194 GGAAAT-GCATCGGCATTGAGACGA-GAGCC
66 GGACATGGCATCGGCATT--GAC-ATGAGTC
32047223 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATATGCA-AGCTAGTGTAAGACCTGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGA-ATATG-AGAGCTAGTGTAAGACCTGTC
*
32047286 TGGGACATGGCATCGGC-TTGACATGTGTC
64 TGGGACATGGCATCGGCATTGACATGAGTC
* * * * * *
32047315 AGTGTAAGACCTGTCTAGGACATGGCATCGACACT-GATAGATGAGTGCCAGTGTAAGACCTGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGC-CTCGA-ATATGAGAGCTAGTGTAAGACCTGTC
* *
32047379 TGGGACATGGCATCGGCTTTGATATATGAAAGTC
64 TGGGACATGGCATCGGCATTG--ACATG--AGTC
* * * * * * * * *
32047413 AGTGTAAGACCTGTCTGGGAGATGGCATCGACTTAG-ATACGTGAGCCAGTGTAAGACCATGTTT
1 AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAATATGAGAGCTAGTGTAAGACC-TGTCT
* *
32047477 GGAACATGGCATCAGCAT
65 GGGACATGGCATCGGCAT
32047495 CGTACCCTAT
Statistics
Matches: 228, Mismatches: 29, Indels: 25
0.81 0.10 0.09
Matches are distributed among these distances:
91 1 0.00
92 60 0.26
93 48 0.21
94 34 0.15
95 9 0.04
96 22 0.10
97 20 0.09
98 34 0.15
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCCTCGAATATGAGAGCTAGTGTAAGACCTGTCTG
GGACATGGCATCGGCATTGACATGAGTC
Found at i:32047375 original size:49 final size:47
Alignment explanation
Indices: 32047131--32047489 Score: 263
Period size: 49 Copynumber: 7.6 Consensus size: 47
32047121 TATGTGTGCT
* * *** * *
32047131 AGTGTAAGACATATCTGGGACAT-GCATCGGCCACAT-TATGAGAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCTTGATAGATGA-AGCC
* * * * *
32047177 AATGTAAGACATGTTTGGGAAAT-GCATCGGCATTG--AGACGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGC-TTGATAGATGA-AGCC
* * * * *
32047223 AGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGATATGCAAGCT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGG-CTTGATAGATG-AAGCC
* * *
32047271 AGTGTAAGACCTGTCTGGGACATGGCATCGGCTTG--ACATG-TGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCTTGATAGATGAAGCC
* * * *
32047315 AGTGTAAGACCTGTCTAGGACATGGCATCGACACTGATAGATGAGTGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGC-TTGATAGATGA-AGCC
* *
32047364 AGTGTAAGACCTGTCTGGGACATGGCATCGGCTTTGATATATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGC-TTGATAGATG-AAGCC
* *
32047413 AGTGTAAGACCTGTCTGGGAGATGGCATCGACTTAGATACG-TG-AGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGGCTT-GATA-GATGAAGCC
* *
32047460 AGTGTAAGACCATGTTTGGAACATGGCATC
1 AGTGTAAGACC-TGTCTGGGACATGGCATC
32047490 AGCATCGTAC
Statistics
Matches: 255, Mismatches: 42, Indels: 30
0.78 0.13 0.09
Matches are distributed among these distances:
44 31 0.12
45 2 0.01
46 67 0.26
47 19 0.07
48 48 0.19
49 87 0.34
50 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (47 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGGCTTGATAGATGAAGCC
Found at i:32047380 original size:93 final size:94
Alignment explanation
Indices: 32047179--32047489 Score: 289
Period size: 93 Copynumber: 3.3 Consensus size: 94
32047169 TGAGAGCTAA
* * * * * * *
32047179 TGTAAGACATGTTTGGGAAAT-GCATCGGCATTGAGAC--GAGAGCCAGTGTAAGACATGTCTGG
1 TGTAAGACCTGTCTGGGACATGGCATCGGCTTTGA-ACATGA-AGTCAGTGTAAGACCTGTCTAG
* * ** *
32047241 GACAT-GCATCGGCCTCGAGATATGCAAGCTAG
64 GACATGGCATCGACCT--AGATACGTGAGCCAG
*
32047273 TGTAAGACCTGTCTGGGACATGGCATCGGC-TTG-ACATG-TGTCAGTGTAAGACCTGTCTAGGA
1 TGTAAGACCTGTCTGGGACATGGCATCGGCTTTGAACATGAAGTCAGTGTAAGACCTGTCTAGGA
32047335 CATGGCATCGACACT-GATA-GATGAGTGCCAG
66 CATGGCATCGAC-CTAGATACG-TGA--GCCAG
* *
32047366 TGTAAGACCTGTCTGGGACATGGCATCGGCTTTGATATATGAAAGTCAGTGTAAGACCTGTCTGG
1 TGTAAGACCTGTCTGGGACATGGCATCGGCTTTGA-ACATG-AAGTCAGTGTAAGACCTGTCTAG
* *
32047431 GAGATGGCATCGACTTAGATACGTGAGCCAG
64 GACATGGCATCGACCTAGATACGTGAGCCAG
* *
32047462 TGTAAGACCATGTTTGGAACATGGCATC
1 TGTAAGACC-TGTCTGGGACATGGCATC
32047490 AGCATCGTAC
Statistics
Matches: 183, Mismatches: 18, Indels: 29
0.80 0.08 0.13
Matches are distributed among these distances:
90 1 0.01
91 5 0.03
92 25 0.14
93 41 0.22
94 27 0.15
95 8 0.04
96 18 0.10
97 17 0.09
98 40 0.22
99 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.25
Consensus pattern (94 bp):
TGTAAGACCTGTCTGGGACATGGCATCGGCTTTGAACATGAAGTCAGTGTAAGACCTGTCTAGGA
CATGGCATCGACCTAGATACGTGAGCCAG
Found at i:32050813 original size:63 final size:62
Alignment explanation
Indices: 32050745--32050940 Score: 227
Period size: 63 Copynumber: 3.1 Consensus size: 62
32050735 TCACACGGCT
** * * *
32050745 TGAACACATGCCCATGTCTCTCACCCATGTGAACCTAAATCCAAAACAGTGAGTAACACGACC
1 TGAACACATG-CCATGTCTCTGGCCCGTGTGAACCTAATTCCAAAACAGTGAGTTACACGACC
*
32050808 TGAACACACGTCCATGTCTCTGGCCCGTGT-AACTCTAATTCCAAAACAGTGAGTTACACGACC
1 TGAACACATG-CCATGTCTCTGGCCCGTGTGAAC-CTAATTCCAAAACAGTGAGTTACACGACC
* ** * *
32050871 TGGACATACAT-CTGTGTCTCTGGCTCGTGTGAACCTAATTCTAAAACAGTGAGTTACACGACC
1 T-GA-ACACATGCCATGTCTCTGGCCCGTGTGAACCTAATTCCAAAACAGTGAGTTACACGACC
32050934 T-AACACA
1 TGAACACA
32050941 CGGCCATGGG
Statistics
Matches: 115, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
60 4 0.03
61 1 0.01
62 3 0.03
63 98 0.85
64 5 0.04
65 4 0.03
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (62 bp):
TGAACACATGCCATGTCTCTGGCCCGTGTGAACCTAATTCCAAAACAGTGAGTTACACGACC
Found at i:32061658 original size:11 final size:12
Alignment explanation
Indices: 32061635--32061667 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
32061625 AAATATTAAA
32061635 AATATAATAATT
1 AATATAATAATT
*
32061647 AAT-TAATTATT
1 AATATAATAATT
32061658 AATATAATAA
1 AATATAATAA
32061668 AATTTGACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
11 10 0.56
12 8 0.44
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
AATATAATAATT
Found at i:32067645 original size:16 final size:16
Alignment explanation
Indices: 32067624--32067661 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
32067614 TTTCGTGTAA
32067624 AAACTTAGGTTTTACC
1 AAACTTAGGTTTTACC
32067640 AAACTTAGGTTTTACC
1 AAACTTAGGTTTTACC
32067656 AAACTT
1 AAACTT
32067662 TTCAGAATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (16 bp):
AAACTTAGGTTTTACC
Found at i:32068990 original size:14 final size:14
Alignment explanation
Indices: 32068971--32069002 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
32068961 CAGATGAAGG
32068971 AGAAAAAAAGAAAA
1 AGAAAAAAAGAAAA
*
32068985 AGAAAAAAAGAAGA
1 AGAAAAAAAGAAAA
32068999 AGAA
1 AGAA
32069003 CAAGAAGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (14 bp):
AGAAAAAAAGAAAA
Found at i:32072904 original size:12 final size:12
Alignment explanation
Indices: 32072887--32072911 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32072877 GGGTTGATCC
32072887 AAGAGAGAGAGA
1 AAGAGAGAGAGA
32072899 AAGAGAGAGAGA
1 AAGAGAGAGAGA
32072911 A
1 A
32072912 GGCAATGGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (12 bp):
AAGAGAGAGAGA
Found at i:32077281 original size:7 final size:7
Alignment explanation
Indices: 32077269--32077294 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
32077259 ATTGATTTGT
32077269 TATGAGG
1 TATGAGG
32077276 TATGAGG
1 TATGAGG
32077283 TATGAGG
1 TATGAGG
32077290 TATGA
1 TATGA
32077295 CGAAAGTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.38, T:0.31
Consensus pattern (7 bp):
TATGAGG
Found at i:32077314 original size:15 final size:15
Alignment explanation
Indices: 32077294--32077324 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
32077284 ATGAGGTATG
*
32077294 ACGAAAGTGATGGTT
1 ACGAAAGGGATGGTT
32077309 ACGAAAGGGATGGTT
1 ACGAAAGGGATGGTT
32077324 A
1 A
32077325 TGATGTATGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.06, G:0.35, T:0.23
Consensus pattern (15 bp):
ACGAAAGGGATGGTT
Found at i:32081871 original size:47 final size:47
Alignment explanation
Indices: 32081800--32081967 Score: 191
Period size: 47 Copynumber: 3.6 Consensus size: 47
32081790 TGATTTGTGC
* *
32081800 GCCAGTGTAA-AACATGTCTGGGACATGCTTTGGCCATATTATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGCTTTAGCCATATTATGAGA
* * * * *
32081846 GCCAGTGTAAGACCATGTCTAGGACATGGCATTAG-CATCCA-AACGAGG
1 GCCAGTGTAAGACCATGTCTGGGACAT-GCTTTAGCCAT--ATTATGAGA
* * *
32081894 GCTAGTGTAAGA-CATGTCTGGGACATGCTTCAACCATATTATGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGCTTTAGCCATATTATGAGA
32081940 GCCAGTGTAAGACCATGTCTGGGACATG
1 GCCAGTGTAAGACCATGTCTGGGACATG
32081968 GCATCGGTAC
Statistics
Matches: 99, Mismatches: 16, Indels: 13
0.77 0.12 0.10
Matches are distributed among these distances:
45 1 0.01
46 29 0.29
47 48 0.48
48 20 0.20
49 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (47 bp):
GCCAGTGTAAGACCATGTCTGGGACATGCTTTAGCCATATTATGAGA
Found at i:32081965 original size:94 final size:91
Alignment explanation
Indices: 32081803--32082158 Score: 307
Period size: 94 Copynumber: 3.8 Consensus size: 91
32081793 TTTGTGCGCC
* *** *
32081803 AGTGTAAAACATGTCTGGGACATGCTTTGGCCAT-ATTATGAGAGCCAGTGTAAGACCATGTCTA
1 AGTGTAAGACATGTCTGGGACATGCTTCAACCATCATTATGAGAGCCAGTGTAAGACCATGTCTG
32081867 GGACATGGCATTAGCATCCAAACGAGGGCT
66 GGACATGGCATT-G-AT-CAAA-GAGGGCT
32081897 AGTGTAAGACATGTCTGGGACATGCTTCAACCAT-ATTATGAGAGCCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCTTCAACCATCATTATGAGAGCCAGTGTAAGACCATGTCTG
* * * *
32081961 GGACATGGCATCGGTACAGAAATGAGTGCC
66 GGACATGGCATTGAT-C--AAA-GAGGGCT
* * * * *
32081991 AGAGTAAGACATGTCTGGGACATGCATCGACC-TCGA-TA-GAGATAGCTAGTGTAAGA-CGTGT
1 AGTGTAAGACATGTCTGGGACATGCTTCAACCATC-ATTATGAG--AGCCAGTGTAAGACCATGT
* * * *
32082052 CTGGGACA-CGCGTTGGT-TAAGAGTTGTGCT
63 CTGGGACATGGCATTGATCAAAGAG--G-GCT
* * * *
32082082 AGTGTAAGACATGTTTTGTACATGCTTCAA-CATGCATGTATGAAAGCCAGTGTAAGACCATGTC
1 AGTGTAAGACATGTCTGGGACATGCTTCAACCAT-CAT-TATGAGAGCCAGTGTAAGACCATGTC
32082146 TGGGACATGGCAT
64 TGGGACATGGCAT
32082159 CGACAATTTA
Statistics
Matches: 213, Mismatches: 33, Indels: 32
0.77 0.12 0.12
Matches are distributed among these distances:
88 3 0.01
89 2 0.01
90 1 0.00
91 28 0.13
92 15 0.07
93 25 0.12
94 126 0.59
95 13 0.06
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (91 bp):
AGTGTAAGACATGTCTGGGACATGCTTCAACCATCATTATGAGAGCCAGTGTAAGACCATGTCTG
GGACATGGCATTGATCAAAGAGGGCT
Found at i:32082045 original size:47 final size:46
Alignment explanation
Indices: 32081800--32082059 Score: 162
Period size: 47 Copynumber: 5.5 Consensus size: 46
32081790 TGATTTGTGC
* * * *
32081800 GCCAGTGTAAAACATGTCTGGGACATGCTTTGGCCAT-ATTATGAG-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACC-TGA-TATGAGTA
* * * * *
32081846 GCCAGTGTAAGACCATGTCTAGGACATGGCATTAGCATCC--AAACGAG-G
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCA-TCG-A-CCTGATATGAGTA
* * *
32081894 GCTAGTGTAAGACATGTCTGGGACATGCTTCAACCAT-ATTATGAG-A
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACC-TGA-TATGAGTA
* *
32081940 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGTA-CAGAAATGAGT-
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATC-G-ACCTGATATGAGTA
*
32081988 GCCAGAGTAAGACATGTCTGGGACATGCATCGACCTCGATA-GAGATA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACCT-GATATGAG-TA
* *
32082035 GCTAGTGTAAGACGTGTCTGGGACA
1 GCCAGTGTAAGACATGTCTGGGACA
32082060 CGCGTTGGTT
Statistics
Matches: 169, Mismatches: 27, Indels: 35
0.73 0.12 0.15
Matches are distributed among these distances:
43 2 0.01
44 2 0.01
45 7 0.04
46 37 0.22
47 76 0.45
48 37 0.22
49 5 0.03
50 1 0.01
51 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGACCTGATATGAGTA
Found at i:32087538 original size:20 final size:20
Alignment explanation
Indices: 32087513--32087573 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
32087503 AATTTTGGTA
* * *
32087513 AGTACTTCATTCGTTTAAAC
1 AGTACTTCATCCATATAAAC
*
32087533 AGTACTCCATCCATATAAAC
1 AGTACTTCATCCATATAAAC
* *
32087553 AGTAATTCATCTATATAAAC
1 AGTACTTCATCCATATAAAC
32087573 A
1 A
32087574 CATAACTTTT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.39, C:0.21, G:0.07, T:0.33
Consensus pattern (20 bp):
AGTACTTCATCCATATAAAC
Found at i:32087777 original size:24 final size:24
Alignment explanation
Indices: 32087742--32087787 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
32087732 GAGCTTATGG
* *
32087742 ACAGTAAGCTCTGACGAGCTGAAA
1 ACAGTAAACTCTGACAAGCTGAAA
*
32087766 ACAGTAAACTCTTACAAGCTGA
1 ACAGTAAACTCTGACAAGCTGA
32087788 TATATCGGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.20
Consensus pattern (24 bp):
ACAGTAAACTCTGACAAGCTGAAA
Found at i:32091469 original size:43 final size:42
Alignment explanation
Indices: 32091379--32091501 Score: 124
Period size: 43 Copynumber: 2.9 Consensus size: 42
32091369 GTTACCGAGA
* * * * * *
32091379 TGTGATTACATATAAGACCATGTCTGGAACATTGGTATTGTAT
1 TGTGATAACATGTAAGACCATGTCTGGGATA-TGGCATCGTAT
*
32091422 TGTGACT-ACGTGTAAGACCATGTCTGGGATAGTGGCATCG-AT
1 TGTGA-TAACATGTAAGACCATGTCTGGGATA-TGGCATCGTAT
*
32091464 ATGTGATAACATGTAAGACCATGTTTGGGATATGGCAT
1 -TGTGATAACATGTAAGACCATGTCTGGGATATGGCAT
32091502 TGTACGAGCT
Statistics
Matches: 68, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
42 9 0.13
43 58 0.85
44 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (42 bp):
TGTGATAACATGTAAGACCATGTCTGGGATATGGCATCGTAT
Found at i:32093222 original size:30 final size:29
Alignment explanation
Indices: 32093186--32093288 Score: 129
Period size: 30 Copynumber: 3.5 Consensus size: 29
32093176 TAACTTGGGT
32093186 CACATGCTCATGTGTGTTGCCCGTGTGTGA
1 CACATGC-CATGTGTGTTGCCCGTGTGTGA
* *
32093216 CACATGCCTATGTGTGTTACCCTTGTGTGA
1 CACATGCC-ATGTGTGTTGCCCGTGTGTGA
*
32093246 CACATGCCCATGTGTGATG-CCGTGTGTGA
1 CACATG-CCATGTGTGTTGCCCGTGTGTGA
*
32093275 TACATGCC-TGTGTG
1 CACATGCCATGTGTG
32093289 GCTAGGCCGC
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
27 6 0.09
28 2 0.03
29 15 0.23
30 40 0.62
31 2 0.03
ACGTcount: A:0.16, C:0.23, G:0.28, T:0.33
Consensus pattern (29 bp):
CACATGCCATGTGTGTTGCCCGTGTGTGA
Found at i:32093229 original size:17 final size:17
Alignment explanation
Indices: 32093209--32093262 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
32093199 GTGTTGCCCG
32093209 TGTGTGACACATGCCTA
1 TGTGTGACACATGCCTA
**
32093226 TGTGTGTTAC---CCT-
1 TGTGTGACACATGCCTA
*
32093239 TGTGTGACACATGCCCA
1 TGTGTGACACATGCCTA
32093256 TGTGTGA
1 TGTGTGA
32093263 TGCCGTGTGT
Statistics
Matches: 28, Mismatches: 5, Indels: 8
0.68 0.12 0.20
Matches are distributed among these distances:
13 8 0.29
14 3 0.11
16 2 0.07
17 15 0.54
ACGTcount: A:0.19, C:0.22, G:0.26, T:0.33
Consensus pattern (17 bp):
TGTGTGACACATGCCTA
Found at i:32093538 original size:17 final size:17
Alignment explanation
Indices: 32093516--32093550 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
32093506 AGACTTTCAT
32093516 TCATATCACATTTACCA
1 TCATATCACATTTACCA
32093533 TCATATCACATTTACCA
1 TCATATCACATTTACCA
32093550 T
1 T
32093551 AATTGAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.29, G:0.00, T:0.37
Consensus pattern (17 bp):
TCATATCACATTTACCA
Found at i:32094170 original size:43 final size:43
Alignment explanation
Indices: 32094108--32094193 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
32094098 TCATATCTCA
32094108 TTTCTCATAGCATAATCATTTATCATATTTGCCATTTCAATAT
1 TTTCTCATAGCATAATCATTTATCATATTTGCCATTTCAATAT
** * * * *
32094151 TTTCTCATCTCATATTCATTTCTCATCTTTTCCATTTCAATAT
1 TTTCTCATAGCATAATCATTTATCATATTTGCCATTTCAATAT
32094194 CAATCACATA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.26, C:0.22, G:0.02, T:0.50
Consensus pattern (43 bp):
TTTCTCATAGCATAATCATTTATCATATTTGCCATTTCAATAT
Found at i:32095617 original size:17 final size:17
Alignment explanation
Indices: 32095590--32095623 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
32095580 CCTTAAAACC
32095590 TACTAAATTCACAAAATT
1 TACTAAATTCA-AAAATT
32095608 TACT-AATTCAAAAATT
1 TACTAAATTCAAAAATT
32095624 AATTAGCTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 6 0.38
18 4 0.25
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (17 bp):
TACTAAATTCAAAAATT
Found at i:32096997 original size:42 final size:43
Alignment explanation
Indices: 32096926--32097021 Score: 106
Period size: 42 Copynumber: 2.3 Consensus size: 43
32096916 TGAGATTTAT
* * *
32096926 GTGTAAGACCATGTTTGGGACATAAGCATCG-TATCTG-ATTTC
1 GTGTAAGACCATCTTTGGGACAGAAGCATCGATA-CTGAATTAC
* * *
32096968 GTGTAAGACCTTCTTTGGGATAGAGGCATCGATACTGAATTAC
1 GTGTAAGACCATCTTTGGGACAGAAGCATCGATACTGAATTAC
*
32097011 ATGTAAGACCA
1 GTGTAAGACCA
32097022 CGTTCGGGAC
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
42 29 0.66
43 15 0.34
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCATCTTTGGGACAGAAGCATCGATACTGAATTAC
Found at i:32108278 original size:19 final size:19
Alignment explanation
Indices: 32108251--32108288 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
32108241 AAAAATAGGA
*
32108251 ATTTTTTTTACTTTT-ATTT
1 ATTTATTTTA-TTTTGATTT
32108270 ATTTATTTTATTTTGATTT
1 ATTTATTTTATTTTGATTT
32108289 TATATTAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (19 bp):
ATTTATTTTATTTTGATTT
Found at i:32114153 original size:22 final size:22
Alignment explanation
Indices: 32114128--32114171 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
32114118 ATTTTTATTT
32114128 GTTTAATTTTGAGTTTTAGTAA
1 GTTTAATTTTGAGTTTTAGTAA
32114150 GTTTAATTTTGAGTTTTAGTAA
1 GTTTAATTTTGAGTTTTAGTAA
32114172 AATTTAGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.55
Consensus pattern (22 bp):
GTTTAATTTTGAGTTTTAGTAA
Found at i:32121493 original size:20 final size:18
Alignment explanation
Indices: 32121438--32121482 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
32121428 TATGGGTAGG
32121438 CCGTGTGGTCACACACGC
1 CCGTGTGGTCACACACGC
32121456 CCGTGTGGTCACACACGC
1 CCGTGTGGTCACACACGC
32121474 CCGTGTGGT
1 CCGTGTGGT
32121483 TCGGGACACG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.13, C:0.36, G:0.31, T:0.20
Consensus pattern (18 bp):
CCGTGTGGTCACACACGC
Found at i:32130067 original size:42 final size:43
Alignment explanation
Indices: 32129960--32130069 Score: 145
Period size: 42 Copynumber: 2.6 Consensus size: 43
32129950 GAGTGCCAAA
* *
32129960 GCCATGTCTCAGACATGGTCTTACA-TGGGTCCGCATATCGAT
1 GCCATGTCTCAGACATGGTCTTATACTGGGACCGCATATCGAT
* * *
32130002 GCCATATCTCAGAAATGGTCTTATACT-GGACCTCATATCGAT
1 GCCATGTCTCAGACATGGTCTTATACTGGGACCGCATATCGAT
32130044 GCCATGTC-CTAGACATGGTCTTATAC
1 GCCATGTCTC-AGACATGGTCTTATAC
32130070 GAAATCACTT
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
41 1 0.02
42 57 0.97
43 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (43 bp):
GCCATGTCTCAGACATGGTCTTATACTGGGACCGCATATCGAT
Found at i:32130158 original size:48 final size:48
Alignment explanation
Indices: 32130040--32130310 Score: 222
Period size: 48 Copynumber: 5.6 Consensus size: 48
32130030 GACCTCATAT
* * * * * *
32130040 CGATGCCATGTCCTAGACATGGTCTTATACGAAATCACTTAATGTTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACGAGATCACATATTGGTGC
* * * * * *
32130088 CGAAGCCATATCCCTGATATGGTCTTATACGAGATCAAATATTGGTGC
1 CGATGCCATGTCCCAGACATGGTCTTACACGAGATCACATATTGGTGC
* * *** *
32130136 CGATGCCATGTCCCAAACATGGTCTTACACTAGCA-CACATATCAATGT
1 CGATGCCATGTCCCAGACATGGTCTTACACGAG-ATCACATATTGGTGC
* * * * * *
32130184 CTATGCCATGTCCCAGACATGGTCTTACATTG-GCTCTCATCTTGGATGT
1 CGATGCCATGTCCCAGACATGGTCTTACA-CGAGATCACATATTGG-TGC
* * * *
32130233 CGATGCCATGTCCCAAACATGGTCTTACACGAGATCTCATCTCGGATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACGAGATCACATATTGG-TGC
* *
32130282 CGATGCCATGTCCTAGATATGGTCTTACA
1 CGATGCCATGTCCCAGACATGGTCTTACA
32130311 TGGGATCTCA
Statistics
Matches: 177, Mismatches: 41, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
48 106 0.60
49 71 0.40
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACGAGATCACATATTGGTGC
Found at i:32130246 original size:49 final size:49
Alignment explanation
Indices: 32130136--32130321 Score: 189
Period size: 49 Copynumber: 3.8 Consensus size: 49
32130126 ATATTGGTGC
* * * * **
32130136 CGATGCCATGTCCCAAACATGGTCTTACACTAGCA-CACAT-ATCAATGT
1 CGATGCCATGTCCCAAACATGGTCTTACA-TTGGATCTCATCTTGGATGT
* * *
32130184 CTATGCCATGTCCCAGACATGGTCTTACATTGGCTCTCATCTTGGATGT
1 CGATGCCATGTCCCAAACATGGTCTTACATTGGATCTCATCTTGGATGT
* * *
32130233 CGATGCCATGTCCCAAACATGGTCTTACA-CGAGATCTCATCTCGGATGC
1 CGATGCCATGTCCCAAACATGGTCTTACATTG-GATCTCATCTTGGATGT
* * * *
32130282 CGATGCCATGTCCTAGATATGGTCTTACATGGGATCTCAT
1 CGATGCCATGTCCCAAACATGGTCTTACATTGGATCTCAT
32130322 TAACCATGGT
Statistics
Matches: 115, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
47 2 0.02
48 32 0.28
49 80 0.70
50 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.29
Consensus pattern (49 bp):
CGATGCCATGTCCCAAACATGGTCTTACATTGGATCTCATCTTGGATGT
Found at i:32130257 original size:97 final size:98
Alignment explanation
Indices: 32130039--32130321 Score: 270
Period size: 96 Copynumber: 2.9 Consensus size: 98
32130029 GGACCTCATA
* * * * * * * *
32130039 TCGATGCCATGTCCTAGACATGGTCTTATACGAAATCACTTAAT-G-TTGCCGAAGCCATATCCC
1 TCGATGCCATGTCCCAAACATGGTCTTACACGAGATCACAT-ATCGAATGCCGATGCCATGTCCC
* * * * * ** *
32130102 TGATATGGTCTTATACGAGATCAAATATTGG-TG
65 AGACATGGTCTTACATGGGATCTCATCTTGGATG
* * * *
32130135 CCGATGCCATGTCCCAAACATGGTCTTACACTAGCA-CACATATC-AATGTCTATGCCATGTCCC
1 TCGATGCCATGTCCCAAACATGGTCTTACACGAG-ATCACATATCGAATGCCGATGCCATGTCCC
* *
32130198 AGACATGGTCTTACATTGGCTCTCATCTTGGATG
65 AGACATGGTCTTACATGGGATCTCATCTTGGATG
* * * *
32130232 TCGATGCCATGTCCCAAACATGGTCTTACACGAGATCTCATCTCGGATGCCGATGCCATGTCCTA
1 TCGATGCCATGTCCCAAACATGGTCTTACACGAGATCACATATCGAATGCCGATGCCATGTCCCA
*
32130297 GATATGGTCTTACATGGGATCTCAT
66 GACATGGTCTTACATGGGATCTCAT
32130322 TAACCATGGT
Statistics
Matches: 148, Mismatches: 33, Indels: 10
0.77 0.17 0.05
Matches are distributed among these distances:
95 2 0.01
96 67 0.45
97 41 0.28
98 38 0.26
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.30
Consensus pattern (98 bp):
TCGATGCCATGTCCCAAACATGGTCTTACACGAGATCACATATCGAATGCCGATGCCATGTCCCA
GACATGGTCTTACATGGGATCTCATCTTGGATG
Found at i:32139825 original size:57 final size:58
Alignment explanation
Indices: 32139764--32139877 Score: 142
Period size: 58 Copynumber: 2.0 Consensus size: 58
32139754 CTATGTCCAA
* *
32139764 CATATGCTCATA-AGAGCTTA-ATCAAGATTGCCCGTCCAGCCTAAATCCTATCTATAT
1 CATATGCTCA-AGAGAGCTTATATCAAGATTACCAGTCCAGCCTAAATCCTATCTATAT
* * * * *
32139821 CATATGCTCAAGAGGGCTTATATCAGGATTACCAGTCCAGGCTAAATTCTTTCTATA
1 CATATGCTCAAGAGAGCTTATATCAAGATTACCAGTCCAGCCTAAATCCTATCTATA
32139878 ATGAGGTTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
56 1 0.02
57 17 0.35
58 30 0.62
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.31
Consensus pattern (58 bp):
CATATGCTCAAGAGAGCTTATATCAAGATTACCAGTCCAGCCTAAATCCTATCTATAT
Found at i:32148882 original size:48 final size:48
Alignment explanation
Indices: 32148760--32149049 Score: 243
Period size: 48 Copynumber: 6.0 Consensus size: 48
32148750 ATCATGGCGA
* *
32148760 TATGAGAGCCAGTGTAAGACCTTGTCTGGGACATGGCATC-AGCACTAGT
1 TATGAGAGCCAGTGTAAGACCATGTCT-GGACATGGCATCGAGCA-TTGT
* * *
32148809 ATATGCGAGCCAGTGTAAGATCATGTTTGGAACATGGCATCGA-CATTGT
1 -TATGAGAGCCAGTGTAAGACCATGTCTGG-ACATGGCATCGAGCATTGT
* * ***
32148858 TATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATC-AGCCTCAA
1 TATGAGAGCCAGTGTAAGACCATGTCT-GGACATGGCATCGAGCATTGT
* * *
32148906 TATGCGAGCCAGTGTAAGACCATGTTTGGAGTATGGCATCG-GCATTGT
1 TATGAGAGCCAGTGTAAGACCATGTCTGGA-CATGGCATCGAGCATTGT
* * * * **
32148954 TA-CATGTGCCAGTGTAAGACCATGCCCAGGACATGGCATC-AGCACCGAT
1 TATGA-GAGCCAGTGTAAGACCATG-TCTGGACATGGCATCGAGCATTG-T
* *
32149003 GTATGAAAGCCAGTGTAAGACCATGTCCGGGACATGGCATCGA-CATT
1 -TATGAGAGCCAGTGTAAGACCATGT-CTGGACATGGCATCGAGCATT
32149050 TTACCCTTTT
Statistics
Matches: 191, Mismatches: 35, Indels: 28
0.75 0.14 0.11
Matches are distributed among these distances:
47 4 0.02
48 104 0.54
49 11 0.06
50 69 0.36
51 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (48 bp):
TATGAGAGCCAGTGTAAGACCATGTCTGGACATGGCATCGAGCATTGT
Found at i:32148961 original size:98 final size:98
Alignment explanation
Indices: 32148760--32149049 Score: 372
Period size: 96 Copynumber: 3.0 Consensus size: 98
32148750 ATCATGGCGA
* * *
32148760 TATGAGAGCCAGTGTAAGACCTTGTCTGGGACATGGCATCAGCACT-AGTATATGCGAGCCAGTG
1 TATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCACTCA-TATATGCGAGCCAGTG
*
32148824 TAAGATCATGTTTGGAACATGGCATCGACATTGT
65 TAAGACCATGTTTGGAACATGGCATCGACATTGT
32148858 TATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGC-CTCA-ATATGCGAGCCAGTGT
1 TATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCACTCATATATGCGAGCCAGTGT
** *
32148921 AAGACCATGTTTGGAGTATGGCATCGGCATTGT
66 AAGACCATGTTTGGAACATGGCATCGACATTGT
** * * * * **
32148954 TACATGTGCCAGTGTAAGACCATGCCCAGGACATGGCATCAGCAC-CGATGTATGAAAGCCAGTG
1 TATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCACTC-ATATATGCGAGCCAGTG
** *
32149018 TAAGACCATGTCCGGGACATGGCATCGACATT
65 TAAGACCATGTTTGGAACATGGCATCGACATT
32149050 TTACCCTTTT
Statistics
Matches: 167, Mismatches: 21, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
96 84 0.50
97 4 0.02
98 79 0.47
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (98 bp):
TATGTGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGCACTCATATATGCGAGCCAGTGT
AAGACCATGTTTGGAACATGGCATCGACATTGT
Found at i:32158773 original size:23 final size:24
Alignment explanation
Indices: 32158698--32158838 Score: 211
Period size: 24 Copynumber: 6.0 Consensus size: 24
32158688 GCTTTATCAT
*
32158698 ATAACTGGAGGCCT-AGCCTCTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTA
32158723 ATAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
32158747 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
32158770 ATAACT-GGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
32158793 ATAACTGGGGCATAAGCCCTTTTA
1 ATAACTGGGGCATAAGCCCTTTTA
32158817 ATAACT-GGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
32158839 GCACTTCCTC
Statistics
Matches: 110, Mismatches: 1, Indels: 12
0.89 0.01 0.10
Matches are distributed among these distances:
22 12 0.11
23 37 0.34
24 47 0.43
25 14 0.13
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:32158773 original size:47 final size:48
Alignment explanation
Indices: 32158698--32158838 Score: 218
Period size: 47 Copynumber: 3.0 Consensus size: 48
32158688 GCTTTATCAT
*
32158698 ATAACTGGAGGCCT-AGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGG-GGCATAAGCC-CTTTTAATAACT-GGGCATAAGCCCTTTTTA
32158747 ATAACTGGGGCATAAGCCC-TTTAATAACTGGGCATAAGCCC-TTTTA
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGCATAAGCCCTTTTTA
32158793 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTTAATAACTGGGCATAAGCCCTTTT
32158839 GCACTTCCTC
Statistics
Matches: 87, Mismatches: 1, Indels: 9
0.90 0.01 0.09
Matches are distributed among these distances:
46 29 0.33
47 38 0.44
48 8 0.09
49 12 0.14
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (48 bp):
ATAACTGGGGCATAAGCCCTTTTAATAACTGGGCATAAGCCCTTTTTA
Done.