Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 104 of 189
Found at i:29050480 original size:20 final size:20
Alignment explanation
Indices: 29050455--29050495 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
29050445 AGGAGAGATT
29050455 TGTAAGCTGAACTCAACTTC
1 TGTAAGCTGAACTCAACTTC
29050475 TGTAAGCTGAACTCAACTTC
1 TGTAAGCTGAACTCAACTTC
29050495 T
1 T
29050496 CAATTTAGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (20 bp):
TGTAAGCTGAACTCAACTTC
Found at i:29055324 original size:8 final size:8
Alignment explanation
Indices: 29055311--29055340 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
29055301 CTATGAAAAT
29055311 AGTGAAGA
1 AGTGAAGA
29055319 AGTGAAGA
1 AGTGAAGA
29055327 AGTGAAGA
1 AGTGAAGA
29055335 AGTGAA
1 AGTGAA
29055341 AATTTTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.37, T:0.13
Consensus pattern (8 bp):
AGTGAAGA
Found at i:29055459 original size:69 final size:68
Alignment explanation
Indices: 29055370--29055524 Score: 195
Period size: 69 Copynumber: 2.3 Consensus size: 68
29055360 TTTTGGAATG
* * * * * *
29055370 TTTAATGAAAATAGTGAAGAAGTGAGTTAT-AGGAGTCTTCTCTAGACAATGTGGAATTAAATTT
1 TTTAATGAAAATAGTGAAGAACTAAGCTATGA-AAGTATTCTCTAGACAATGTGGAATTAAA-AT
*
29055434 AACTT
64 AAATT
* *
29055439 TTTAATGAAAATAGTGAAGAACTAAGCTATGAAAGTATTCTCTAGTCAATGTGGGATTAAAATAA
1 TTTAATGAAAATAGTGAAGAACTAAGCTATGAAAGTATTCTCTAGACAATGTGGAATTAAAATAA
29055504 ATT
66 ATT
*
29055507 TTTAATAAAAATAGTGAA
1 TTTAATGAAAATAGTGAA
29055525 AAATTGTCAC
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
68 22 0.29
69 52 0.69
70 1 0.01
ACGTcount: A:0.42, C:0.06, G:0.18, T:0.34
Consensus pattern (68 bp):
TTTAATGAAAATAGTGAAGAACTAAGCTATGAAAGTATTCTCTAGACAATGTGGAATTAAAATAA
ATT
Found at i:29055605 original size:160 final size:164
Alignment explanation
Indices: 29055402--29055770 Score: 448
Period size: 165 Copynumber: 2.3 Consensus size: 164
29055392 TGAGTTATAG
* * *
29055402 GAGTCTTCTCTAGACAATGTGGAATTAAATTTAACTTTTTAATGAAAA-TAGTGAAGAACTAAGC
1 GAGTGTTCTCTAGTCAATGTGG-ATTAAAGTTAACTTTTTAATGAAAATTA-TGAAGAACTAAGC
29055466 TATGA-AAGTATTCTCTAGTC-A-A-TGTGGGATTAAAATAA-ATTTTTAATAAAAATAGTGAA-
64 TATGAGAA-TATTCTCTAGTCAATATTGTGGGATTAAAATAATA-TTTTAATAAAAATAGTGAAG
* *
29055525 AAATTGTCACTTATTTATAAGAAAAATGTGAGATATTA
127 AAATTGTCACTTATTTATAAGAAAAATGTGAAATATGA
* * * **
29055563 GAGTGTTCTCTAGTCAATATGGATTAGAA-TTAACTTTTTAATGAAAATTATGAAGAAGTGATTT
1 GAGTGTTCTCTAGTCAATGTGGATTA-AAGTTAACTTTTTAATGAAAATTATGAAGAACTAAGCT
* * *
29055627 ATGAGAATATTCTCTAGTCAATATTGTGGGATTAAAATCATCATTTTCATGAAAATAGTGAAGAA
65 ATGAGAATATTCTCTAGTCAATATTGTGGGATTAAAATAAT-ATTTTAATAAAAATAGTGAAGAA
** *
29055692 ATTGTCACTTATTTATAAGTTAAATGTTAAATATGA
129 ATTGTCACTTATTTATAAGAAAAATGTGAAATATGA
* * *
29055728 GAGTGTTCTGTAATCAATGTGTAATTAAAGTTAACTTTTTAAT
1 GAGTGTTCTCTAGTCAATGTG-GATTAAAGTTAACTTTTTAAT
29055771 TTCTTAAATT
Statistics
Matches: 178, Mismatches: 19, Indels: 17
0.83 0.09 0.08
Matches are distributed among these distances:
160 48 0.27
161 26 0.15
162 1 0.01
163 15 0.08
164 17 0.10
165 54 0.30
166 17 0.10
ACGTcount: A:0.39, C:0.07, G:0.16, T:0.37
Consensus pattern (164 bp):
GAGTGTTCTCTAGTCAATGTGGATTAAAGTTAACTTTTTAATGAAAATTATGAAGAACTAAGCTA
TGAGAATATTCTCTAGTCAATATTGTGGGATTAAAATAATATTTTAATAAAAATAGTGAAGAAAT
TGTCACTTATTTATAAGAAAAATGTGAAATATGA
Found at i:29057412 original size:24 final size:24
Alignment explanation
Indices: 29057346--29057420 Score: 89
Period size: 24 Copynumber: 3.1 Consensus size: 24
29057336 CTTGGGTGGC
* *
29057346 GGCGGTGGTGCTGGTGGTGGAGTT
1 GGCGGTGGAGCTGGTGGTGGTGTT
* * *
29057370 GGAGGTGGAG-TCGGAGGTGCTGTT
1 GGCGGTGGAGCT-GGTGGTGGTGTT
29057394 GGCGGTGGAGCTGGTGGTGGTGTT
1 GGCGGTGGAGCTGGTGGTGGTGTT
29057418 GGC
1 GGC
29057421 ACTGGTGTCC
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
23 1 0.02
24 39 0.95
25 1 0.02
ACGTcount: A:0.07, C:0.09, G:0.57, T:0.27
Consensus pattern (24 bp):
GGCGGTGGAGCTGGTGGTGGTGTT
Found at i:29058108 original size:3 final size:3
Alignment explanation
Indices: 29058100--29058150 Score: 93
Period size: 3 Copynumber: 17.0 Consensus size: 3
29058090 AGCAAATAAC
*
29058100 TAT TAT TAT TAT TAT TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
29058148 TAT
1 TAT
29058151 ATACGTGCAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:29060043 original size:30 final size:28
Alignment explanation
Indices: 29059976--29060043 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 28
29059966 TCGTAAATTT
* *
29059976 AAAATTTAGTCTTTTTACACTTATTTTT
1 AAAATTTAGTCATTTTACACTTATTTTC
* *
29060004 AAGAATTTAGTCATTTTAGATTTCAATTTTC
1 AA-AATTTAGTCATTTTACACTT--ATTTTC
29060035 AAAATTTAG
1 AAAATTTAG
29060044 GGCCTACTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 2 0.06
29 17 0.52
30 7 0.21
31 7 0.21
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50
Consensus pattern (28 bp):
AAAATTTAGTCATTTTACACTTATTTTC
Found at i:29064138 original size:3 final size:3
Alignment explanation
Indices: 29064130--29064154 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
29064120 TTAATGTTTG
29064130 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
29064155 CATATTTGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:29078883 original size:27 final size:27
Alignment explanation
Indices: 29078853--29078913 Score: 95
Period size: 27 Copynumber: 2.3 Consensus size: 27
29078843 ATAAATAGGC
29078853 CCAAAATCATGTGGCCCACTATTGTAG
1 CCAAAATCATGTGGCCCACTATTGTAG
* * *
29078880 CCAAAACCATGTGGCCCATTATTGTGG
1 CCAAAATCATGTGGCCCACTATTGTAG
29078907 CCAAAAT
1 CCAAAAT
29078914 TAAGCGGCCA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (27 bp):
CCAAAATCATGTGGCCCACTATTGTAG
Found at i:29078922 original size:27 final size:27
Alignment explanation
Indices: 29078865--29078929 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 27
29078855 AAAATCATGT
* * *
29078865 GGCCCACTATTGTAGCCAAAACCATGT
1 GGCCCATTATTGTAGCCAAAACCAAGC
* **
29078892 GGCCCATTATTGTGGCCAAAATTAAGC
1 GGCCCATTATTGTAGCCAAAACCAAGC
*
29078919 GGCCAATTATT
1 GGCCCATTATT
29078930 TTGAGGCTTA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26
Consensus pattern (27 bp):
GGCCCATTATTGTAGCCAAAACCAAGC
Found at i:29085012 original size:29 final size:29
Alignment explanation
Indices: 29084980--29085036 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
29084970 TCCAAACATT
29084980 ATTTTCATTTCGTAATTTAAATTCTCAAC
1 ATTTTCATTTCGTAATTTAAATTCTCAAC
*
29085009 ATTTTCATTTTGTAATTTAAATTCTCAA
1 ATTTTCATTTCGTAATTTAAATTCTCAA
29085037 ACCAAATCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.14, G:0.04, T:0.51
Consensus pattern (29 bp):
ATTTTCATTTCGTAATTTAAATTCTCAAC
Found at i:29097528 original size:12 final size:12
Alignment explanation
Indices: 29097511--29097535 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
29097501 ACGAAATAGT
29097511 AAAAATAAAATA
1 AAAAATAAAATA
29097523 AAAAATAAAATA
1 AAAAATAAAATA
29097535 A
1 A
29097536 TAATAATAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (12 bp):
AAAAATAAAATA
Found at i:29099837 original size:44 final size:44
Alignment explanation
Indices: 29099484--29099840 Score: 317
Period size: 44 Copynumber: 8.1 Consensus size: 44
29099474 GTGTTATTTC
** * *
29099484 AATCTACTCCACCACAACTTCAGAGAGATAAGACTTGTAGCTTC
1 AATCTACTCCACTGCAACTTCAGAGAGATAAGATTTGTAGCTTT
* *
29099528 AATCTGCTCCACTGTAACTTCAGAGAGATAAGATTTGT-GACTTGT
1 AATCTACTCCACTGCAACTTCAGAGAGATAAGATTTGTAG-CTT-T
* * * * * * * *
29099573 AGT-T-TTACCACTGTAACTTCAGGGAAATAAGATTCGCTATCTTC
1 AATCTACT-CCACTGCAACTTCAGAGAGATAAGATTTG-TAGCTTT
* * * * *
29099617 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGTTATCTTC
1 AATCTACTCCACTGCAACTTCAGAGAGATAAGATTTG-TAGCTTT
* * * *
29099662 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGTGGATTT
1 AATCTACTCCACTGCAACTTCAGAGAGATAAGATTTGTAGCTTT
* * * *
29099706 AATTTACTCTACTGAAACTTCA-ATGAGATGAGATTTGTAGCTTT
1 AATCTACTCCACTGCAACTTCAGA-GAGATAAGATTTGTAGCTTT
* * * * * *
29099750 AATTTGCTCCACTGCAACTTTAGTGAGATGAGATTTATAGCTTT
1 AATCTACTCCACTGCAACTTCAGAGAGATAAGATTTGTAGCTTT
* *
29099794 AATCTACTCTACTGCAACTTCAGAGAGATAAGATTTATAGCTTT
1 AATCTACTCCACTGCAACTTCAGAGAGATAAGATTTGTAGCTTT
29099838 AAT
1 AAT
29099841 TTGTGGCTTT
Statistics
Matches: 261, Mismatches: 43, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
43 2 0.01
44 181 0.69
45 77 0.30
46 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.33
Consensus pattern (44 bp):
AATCTACTCCACTGCAACTTCAGAGAGATAAGATTTGTAGCTTT
Found at i:29116505 original size:17 final size:17
Alignment explanation
Indices: 29116477--29116511 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
29116467 TTATTTTTAA
29116477 TAAAAAATTAT-AATTT
1 TAAAAAATTATAAATTT
29116493 TAAAAAATATATAAATTT
1 TAAAAAAT-TATAAATTT
29116511 T
1 T
29116512 TTTAATAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 3 0.18
18 6 0.35
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TAAAAAATTATAAATTT
Found at i:29116521 original size:13 final size:12
Alignment explanation
Indices: 29116502--29116558 Score: 50
Period size: 11 Copynumber: 4.9 Consensus size: 12
29116492 TTAAAAAATA
29116502 TATAAATTTTTT
1 TATAAATTTTTT
29116514 TAATAAATTTTGTT
1 T-ATAAATTTT-TT
29116528 TAT-AA-TTTTT
1 TATAAATTTTTT
*
29116538 TAT-GATTTTTT
1 TATAAATTTTTT
*
29116549 AAT-AATTTTT
1 TATAAATTTTT
29116559 AAATTTTAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
10 6 0.15
11 16 0.41
12 3 0.08
13 11 0.28
14 3 0.08
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.65
Consensus pattern (12 bp):
TATAAATTTTTT
Found at i:29118183 original size:7 final size:7
Alignment explanation
Indices: 29118171--29118208 Score: 76
Period size: 7 Copynumber: 5.4 Consensus size: 7
29118161 AATAATCTTC
29118171 TTTATTT
1 TTTATTT
29118178 TTTATTT
1 TTTATTT
29118185 TTTATTT
1 TTTATTT
29118192 TTTATTT
1 TTTATTT
29118199 TTTATTT
1 TTTATTT
29118206 TTT
1 TTT
29118209 TAGTAACGTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTATTT
Found at i:29121080 original size:25 final size:25
Alignment explanation
Indices: 29121046--29121098 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
29121036 TTGAACCGAG
* *
29121046 TTGGGTGATCGACGGGTTTTTGGTC
1 TTGGGTGATCGACAGGTTTTGGGTC
29121071 TTGGGTGATCGACAGGTTTTGGGTC
1 TTGGGTGATCGACAGGTTTTGGGTC
29121096 TTG
1 TTG
29121099 AGTTGGTGTC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.09, C:0.11, G:0.40, T:0.40
Consensus pattern (25 bp):
TTGGGTGATCGACAGGTTTTGGGTC
Found at i:29122078 original size:19 final size:19
Alignment explanation
Indices: 29122050--29122086 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
29122040 CTCTCCTCTT
* *
29122050 CTTTCCTTTTCTTTTTTTA
1 CTTTCATTTTATTTTTTTA
29122069 CTTTCATTTTATTTTTTT
1 CTTTCATTTTATTTTTTT
29122087 CTCAAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (19 bp):
CTTTCATTTTATTTTTTTA
Found at i:29122830 original size:63 final size:63
Alignment explanation
Indices: 29122725--29122844 Score: 150
Period size: 63 Copynumber: 1.9 Consensus size: 63
29122715 TGAGATGTAG
* * * *
29122725 GAGTCACACGGGTGAGACACACAAGCGTGTGTCTAGGCCGTGTAACTCACTAAGTTTGCATTA
1 GAGTCACACGAGTAAGACACACAAGCATGTGTCCAGGCCGTGTAACTCACTAAGTTTGCATTA
* * * * * *
29122788 GAGTCACATGAGTAAGACATACAGGCATGTGTCCAGGTCGTGTGACTCACTTAGTTT
1 GAGTCACACGAGTAAGACACACAAGCATGTGTCCAGGCCGTGTAACTCACTAAGTTT
29122845 ATATTTAAGA
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
63 47 1.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (63 bp):
GAGTCACACGAGTAAGACACACAAGCATGTGTCCAGGCCGTGTAACTCACTAAGTTTGCATTA
Found at i:29122859 original size:63 final size:63
Alignment explanation
Indices: 29122739--29122881 Score: 153
Period size: 63 Copynumber: 2.3 Consensus size: 63
29122729 CACACGGGTG
* * * * * *
29122739 AGACACACAAGCGTGTGTCTAGGCCGTGTAACTCACTAAGTTTGCATTAGAGTCACATGAGTA
1 AGACACACAGGCATGTGTCCAGGCCGTGTAACTCACTAAGTTTACATTAGAGACACATGAGCA
* * * * * *
29122802 AGACATACAGGCATGTGTCCAGGTCGTGTGACTCACTTAGTTTATATTTA-AGACACATGGGCA
1 AGACACACAGGCATGTGTCCAGGCCGTGTAACTCACTAAGTTTACA-TTAGAGACACATGAGCA
*
29122865 AGGCACACAGGCATGTG
1 AGACACACAGGCATGTG
29122882 CTAGACTGTG
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
63 62 0.95
64 3 0.05
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (63 bp):
AGACACACAGGCATGTGTCCAGGCCGTGTAACTCACTAAGTTTACATTAGAGACACATGAGCA
Found at i:29127174 original size:19 final size:19
Alignment explanation
Indices: 29127150--29127186 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
29127140 CATAATAATA
29127150 AAAATTTT-ATATATAAATC
1 AAAATTTTAATAT-TAAATC
29127169 AAAATTTTAATATTAAAT
1 AAAATTTTAATATTAAAT
29127187 ATTATTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (19 bp):
AAAATTTTAATATTAAATC
Found at i:29129422 original size:6 final size:6
Alignment explanation
Indices: 29129411--29129492 Score: 62
Period size: 6 Copynumber: 13.7 Consensus size: 6
29129401 CAAACAGCAT
* * *
29129411 AGATAC AGATAC AG-TAAC AGATAC -GAATAC AGATGC AGTTAC AGACAC
1 AGATAC AGATAC AGAT-AC AGATAC AG-ATAC AGATAC AGATAC AGATAC
* * *
29129459 AGATAC ATATAC AAATAC TA-ATAC AGATAT AGAT
1 AGATAC AGATAC AGATAC -AGATAC AGATAC AGAT
29129493 CCTACCCCCA
Statistics
Matches: 61, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
5 3 0.05
6 55 0.90
7 3 0.05
ACGTcount: A:0.49, C:0.16, G:0.15, T:0.21
Consensus pattern (6 bp):
AGATAC
Found at i:29129863 original size:12 final size:12
Alignment explanation
Indices: 29129846--29129882 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
29129836 TTTCAGAAAC
29129846 TACATAACACAT
1 TACATAACACAT
*
29129858 TACAT-A-TCAT
1 TACATAACACAT
29129868 TACATAACACAT
1 TACATAACACAT
29129880 TAC
1 TAC
29129883 GGAACCTACG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
10 8 0.38
11 2 0.10
12 11 0.52
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (12 bp):
TACATAACACAT
Found at i:29132044 original size:325 final size:325
Alignment explanation
Indices: 29131454--29132105 Score: 1268
Period size: 325 Copynumber: 2.0 Consensus size: 325
29131444 TATATCAAGT
29131454 GGTAGCCATGAATGGGGTGTAATCAGGGGCGAAACCAAAAAATTTTTTAGGAGGGAGCTGAATTA
1 GGTAGCCATGAATGGGGTGTAATCAGGGGCGAAACCAAAAAATTTTTTAGGAGGGAGCTGAATTA
29131519 AATTTTAAAACCCTTTTACGATATTAAAAATACAAAAATACCATTTTAATAGCCTATATCTTTAT
66 AATTTTAAAACCCTTTTACGATATTAAAAATACAAAAATACCATTTTAATAGCCTATATCTTTAT
29131584 AATTTTTAAAGGATTAAATCAATTCTTTTAATTATTTTTAGAGGACCCAAAGTTCAATTTTACTT
131 AATTTTTAAAGGATTAAATCAATTCTTTTAATTATTTTTAGAGGACCCAAAGTTCAATTTTACTT
*
29131649 TTACTAATTTAAAATTTAAAATCTTTAAAGGGCCTAGATAGAAATTTTCCCACTTTTGAGGGGGG
196 TTACTAATTTAAAATTTAAAATCTTTAAAGGGCCTAAATAGAAATTTTCCCACTTTTGAGGGGGG
* *
29131714 TCAGGGCCCCTGCTATCCCTTAGCTACATCCCTAGGTGTAATCACTCGGTGGTGTAAGCAGTGGC
261 TCAGGGCCCCTGCTAGCCCTTAGCTACACCCCTAGGTGTAATCACTCGGTGGTGTAAGCAGTGGC
29131779 GGTAGCCATGAATGGGGTGTAATCAGGGGCGAAACCAAAAAATTTTTTAGGAGGGAGCTGAATTA
1 GGTAGCCATGAATGGGGTGTAATCAGGGGCGAAACCAAAAAATTTTTTAGGAGGGAGCTGAATTA
29131844 AATTTTAAAACCCTTTTACGATATTAAAAATACAAAAATACCATTTTAATAGCCTATATCTTTAT
66 AATTTTAAAACCCTTTTACGATATTAAAAATACAAAAATACCATTTTAATAGCCTATATCTTTAT
*
29131909 AATTTTTAAAGGATTAAATTAATTCTTTTAATTATTTTTAGAGGACCCAAAGTTCAATTTTACTT
131 AATTTTTAAAGGATTAAATCAATTCTTTTAATTATTTTTAGAGGACCCAAAGTTCAATTTTACTT
29131974 TTACTAATTTAAAATTTAAAATCTTTAAAGGGCCTAAATAGAAATTTTCCCACTTTTGAGGGGGG
196 TTACTAATTTAAAATTTAAAATCTTTAAAGGGCCTAAATAGAAATTTTCCCACTTTTGAGGGGGG
29132039 TCAGGGCCCCTGCTAGCCCTTAGCTACACCCCTAGGTGTAATCACTCGGTGGTGTAAGCAGTGGC
261 TCAGGGCCCCTGCTAGCCCTTAGCTACACCCCTAGGTGTAATCACTCGGTGGTGTAAGCAGTGGC
29132104 GG
1 GG
29132106 AGCGTAGTGG
Statistics
Matches: 323, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
325 323 1.00
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.33
Consensus pattern (325 bp):
GGTAGCCATGAATGGGGTGTAATCAGGGGCGAAACCAAAAAATTTTTTAGGAGGGAGCTGAATTA
AATTTTAAAACCCTTTTACGATATTAAAAATACAAAAATACCATTTTAATAGCCTATATCTTTAT
AATTTTTAAAGGATTAAATCAATTCTTTTAATTATTTTTAGAGGACCCAAAGTTCAATTTTACTT
TTACTAATTTAAAATTTAAAATCTTTAAAGGGCCTAAATAGAAATTTTCCCACTTTTGAGGGGGG
TCAGGGCCCCTGCTAGCCCTTAGCTACACCCCTAGGTGTAATCACTCGGTGGTGTAAGCAGTGGC
Found at i:29132526 original size:68 final size:68
Alignment explanation
Indices: 29132403--29132538 Score: 227
Period size: 68 Copynumber: 2.0 Consensus size: 68
29132393 TAGCTTTCCG
* * * *
29132403 TGGATGTGAGAATAGGGACATCGAGTATTTGTGTTTATTGGGTTTCTGGCTGAATTGTACGAGTA
1 TGGACGTGAGAATAGGGACATCGAGTATCTGTGTTTATTGGGTTTCAGGCAGAATTGTACGAGTA
29132468 ACA
66 ACA
*
29132471 TGGACGTGAGAATAGGGACATCGAGTATCTGTGTTTTTTGGGTTTCAGGCAGAATTGTACGAGTA
1 TGGACGTGAGAATAGGGACATCGAGTATCTGTGTTTATTGGGTTTCAGGCAGAATTGTACGAGTA
29132536 ACA
66 ACA
29132539 AGTTTCTTAA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.26, C:0.10, G:0.31, T:0.33
Consensus pattern (68 bp):
TGGACGTGAGAATAGGGACATCGAGTATCTGTGTTTATTGGGTTTCAGGCAGAATTGTACGAGTA
ACA
Found at i:29139050 original size:19 final size:18
Alignment explanation
Indices: 29139009--29139057 Score: 53
Period size: 19 Copynumber: 2.7 Consensus size: 18
29138999 TTTTTAAAGG
*
29139009 GTATCGATAATTCAAAAA
1 GTATCGATACTTCAAAAA
* *
29139027 ATATCGATACTTCCAAATA
1 GTATCGATACTT-CAAAAA
*
29139046 GTATCAATACTT
1 GTATCGATACTT
29139058 TTTGGCCTCG
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
18 10 0.40
19 15 0.60
ACGTcount: A:0.43, C:0.16, G:0.08, T:0.33
Consensus pattern (18 bp):
GTATCGATACTTCAAAAA
Found at i:29141828 original size:31 final size:31
Alignment explanation
Indices: 29141793--29141851 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
29141783 TATGTGACTT
29141793 AATTAAGTTATTCGGATTAACTCGAATAAAA
1 AATTAAGTTATTCGGATTAACTCGAATAAAA
* * *
29141824 AATTAAGTTTTTGGGTTTAACTCGAATA
1 AATTAAGTTATTCGGATTAACTCGAATA
29141852 TGAATTACAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.37
Consensus pattern (31 bp):
AATTAAGTTATTCGGATTAACTCGAATAAAA
Found at i:29147134 original size:30 final size:31
Alignment explanation
Indices: 29147075--29147139 Score: 73
Period size: 30 Copynumber: 2.1 Consensus size: 31
29147065 TTTTATTTTA
29147075 TTTTAAAATTAATTAAATAATGTAATTATT-
1 TTTTAAAATTAATTAAATAATGTAATTATTG
* *
29147105 TTTTAAAATTTA-TATAT-ATGTATATTTATTG
1 TTTTAAAATTAATTAAATAATGTA-A-TTATTG
29147136 TTTT
1 TTTT
29147140 CTTATGTACA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
28 5 0.17
29 5 0.17
30 16 0.53
31 4 0.13
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (31 bp):
TTTTAAAATTAATTAAATAATGTAATTATTG
Found at i:29147145 original size:21 final size:22
Alignment explanation
Indices: 29147121--29147164 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
29147111 AATTTATATA
29147121 TATGT-ATATTTATTGTTTTCT
1 TATGTAATATTTATTGTTTTCT
*
29147142 TATGTACATATTTATTTTTTTCT
1 TATGTA-ATATTTATTGTTTTCT
29147165 CAACTAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 5 0.25
23 15 0.75
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.66
Consensus pattern (22 bp):
TATGTAATATTTATTGTTTTCT
Found at i:29150127 original size:20 final size:20
Alignment explanation
Indices: 29150102--29150163 Score: 88
Period size: 20 Copynumber: 3.1 Consensus size: 20
29150092 GTTTGATGTG
29150102 TTAAAATGATTTTAACTTGA
1 TTAAAATGATTTTAACTTGA
* * *
29150122 TTAAAATCATTTTGACTTGG
1 TTAAAATGATTTTAACTTGA
*
29150142 TTAAAATGATTTTCACTTGA
1 TTAAAATGATTTTAACTTGA
29150162 TT
1 TT
29150164 TTAAAATTAT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.34, C:0.08, G:0.11, T:0.47
Consensus pattern (20 bp):
TTAAAATGATTTTAACTTGA
Found at i:29155596 original size:12 final size:12
Alignment explanation
Indices: 29155581--29155614 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
29155571 GCCGCCAAGG
*
29155581 CCACCACCAACT
1 CCACCTCCAACT
*
29155593 CCACCTCCACCT
1 CCACCTCCAACT
29155605 CCACCTCCAA
1 CCACCTCCAA
29155615 GACCGGTTCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.62, G:0.00, T:0.12
Consensus pattern (12 bp):
CCACCTCCAACT
Found at i:29166163 original size:13 final size:13
Alignment explanation
Indices: 29166145--29166169 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
29166135 TAATGGTATA
29166145 TTGAATCCATGAT
1 TTGAATCCATGAT
29166158 TTGAATCCATGA
1 TTGAATCCATGA
29166170 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:29167792 original size:47 final size:47
Alignment explanation
Indices: 29167741--29168099 Score: 556
Period size: 47 Copynumber: 7.6 Consensus size: 47
29167731 TATGTGTGGT
29167741 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
29167788 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
29167835 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * *
29167884 AAGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
29167931 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
29167980 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCTGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
29168027 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
29168074 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
29168100 TCCCGAAGGG
Statistics
Matches: 286, Mismatches: 22, Indels: 8
0.91 0.07 0.03
Matches are distributed among these distances:
47 197 0.69
49 89 0.31
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:29167876 original size:96 final size:94
Alignment explanation
Indices: 29167741--29168099 Score: 574
Period size: 96 Copynumber: 3.8 Consensus size: 94
29167731 TATGTGTGGT
29167741 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
29167806 GTGATAAGGCCGAATGGCCAATGTGATGA
66 GTGATAAGGCCGAATGGCCAATGTGATGA
*
29167835 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAAAGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
29167900 ATGTGATAAGGCCGAATGGCCAATGTGATGA
64 ATGTGATAAGGCCGAATGGCCAATGTGATGA
29167931 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* **
29167996 ATGTGATAAGGCCTAATGGCTGATGTGATGA
64 ATGTGATAAGGCCGAATGGCCAATGTGATGA
* * * * * * * *
29168027 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
29168092 GTGATAAG
66 GTGATAAG
29168100 TCCCGAAGGG
Statistics
Matches: 250, Mismatches: 13, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
94 65 0.26
96 185 0.74
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCAATGTGATGA
Found at i:29167995 original size:143 final size:144
Alignment explanation
Indices: 29167743--29168099 Score: 571
Period size: 143 Copynumber: 2.5 Consensus size: 144
29167733 TGTGTGGTAT
* *
29167743 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATAT
29167806 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATG
29167871 GCCGATGTGATGAAA
130 GCCGATGTGATGAAA
29167886 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATAT
1 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATAT
* *
29167951 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGG
* *
29168015 CTGATGTGATGAAT
131 CCGATGTGATGAAA
* * * * *
29168029 GTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-AT
1 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATAT
29168092 GTGATAAG
66 GTGATAAG
29168100 TCCCGAAGGG
Statistics
Matches: 201, Mismatches: 11, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
141 10 0.05
142 1 0.00
143 145 0.72
145 45 0.22
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (144 bp):
GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATAT
GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGG
CCGATGTGATGAAA
Found at i:29169793 original size:40 final size:40
Alignment explanation
Indices: 29169559--29169781 Score: 293
Period size: 40 Copynumber: 5.6 Consensus size: 40
29169549 GAGTGAAATG
* *
29169559 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
29169599 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
29169639 TCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGCGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* * * *
29169679 TCCGGACTAAGTTCCGAAGAGCAATCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* ** * * * *
29169719 TCCGTGCTAAACCCCGAAGAGCATTTGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
29169759 TCTGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
29169782 ATCATGCTGG
Statistics
Matches: 159, Mismatches: 24, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 159 1.00
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:29171991 original size:13 final size:13
Alignment explanation
Indices: 29171973--29171997 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
29171963 TAATGGTATA
29171973 TTGAATCCATGAT
1 TTGAATCCATGAT
29171986 TTGAATCCATGA
1 TTGAATCCATGA
29171998 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:29173619 original size:47 final size:47
Alignment explanation
Indices: 29173568--29174208 Score: 1048
Period size: 47 Copynumber: 13.6 Consensus size: 47
29173558 TATGTGTGGT
*
29173568 ATGTGAAAGTGTATATATGTGATAAGGTCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
29173615 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
29173662 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
29173711 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
29173758 ATGTGAAAGTGTATATATGGGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
29173805 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
29173852 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* *
29173899 ATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
29173946 ATGTGAAAGTGTATATATAAGTGATAAGGACTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATAT--GTGATAAGGCCTAATGGCCGATGTGATGA
*
29173995 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
29174042 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
29174089 ATGTGAAAGTGTATATATGTGATAAGGACTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
29174136 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
29174183 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
29174209 TCCCGAAGGG
Statistics
Matches: 561, Mismatches: 29, Indels: 8
0.94 0.05 0.01
Matches are distributed among these distances:
47 472 0.84
49 89 0.16
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:29173988 original size:237 final size:235
Alignment explanation
Indices: 29173568--29174208 Score: 1093
Period size: 237 Copynumber: 2.7 Consensus size: 235
29173558 TATGTGTGGT
* *
29173568 ATGTGAAAGTGTATATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
* * *
29173633 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAATG
* *
29173698 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
129 GCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGACTAATAGCCGATGTGATGAATGTG
29173763 AAAGTGTATATATGGGATAAGGCCTAATAGCCGATGTGATGA
194 AAAGTGTATATATGGGATAAGGCCTAATAGCCGATGTGATGA
29173805 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
*
29173870 GTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
*
29173935 CAATGTGATGAATGTGAAAGTGTATATATAAGTGATAAGGACTAATGGCCGATGTGATGAATGTG
131 CAATGTGATGAATGTGAAAGTGTATATAT--GTGATAAGGACTAATAGCCGATGTGATGAATGTG
*
29174000 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
194 AAAGTGTATATATGGGATAAGGCCTAATAGCCGATGTGATGA
29174042 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
* * * *
29174107 GTGATAAGGACTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGC
66 GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
* * *
29174172 CAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
131 CAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
29174209 TCCCGAAGGG
Statistics
Matches: 384, Mismatches: 18, Indels: 6
0.94 0.04 0.01
Matches are distributed among these distances:
235 60 0.16
237 324 0.84
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (235 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGC
CAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGACTAATAGCCGATGTGATGAATGTGAA
AGTGTATATATGGGATAAGGCCTAATAGCCGATGTGATGA
Found at i:29174078 original size:284 final size:284
Alignment explanation
Indices: 29173568--29174208 Score: 1147
Period size: 284 Copynumber: 2.3 Consensus size: 284
29173558 TATGTGTGGT
*
29173568 ATGTGAAAGTGTATATATGTGATAAGGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
* *
29173633 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATAAGTGATAAGGACTAATG
29173698 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
131 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
29173763 AAAGTGTATATATGGGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
196 AAAGTGTATATATGGGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
*
29173828 AAGGCCTAATAGCCGATGTGATGA
261 AAGGACTAATAGCCGATGTGATGA
*
29173852 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
29173917 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATAAGTGATAAGGACTAATG
66 GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATAAGTGATAAGGACTAATG
29173982 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
131 GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
*
29174047 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
196 AAAGTGTATATATGGGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
*
29174112 AAGGACTAATGGCCGATGTGATGA
261 AAGGACTAATAGCCGATGTGATGA
* * * * * * * *
29174136 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAAT
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
29174201 GTGATAAG
66 GTGATAAG
29174209 TCCCGAAGGG
Statistics
Matches: 341, Mismatches: 16, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
284 341 1.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (284 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
GTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATAAGTGATAAGGACTAATG
GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTG
AAAGTGTATATATGGGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
AAGGACTAATAGCCGATGTGATGA
Found at i:29176549 original size:12 final size:13
Alignment explanation
Indices: 29176532--29176560 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
29176522 GTTACCCTTA
29176532 TTCTTTTC-TTCT
1 TTCTTTTCTTTCT
29176544 TTCTTTTCTTTCT
1 TTCTTTTCTTTCT
29176557 TTCT
1 TTCT
29176561 ATTTGCATGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (13 bp):
TTCTTTTCTTTCT
Found at i:29176599 original size:3 final size:3
Alignment explanation
Indices: 29176591--29176631 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
29176581 AATTACTATT
29176591 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
29176632 TATTATTATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:29196637 original size:31 final size:31
Alignment explanation
Indices: 29196602--29196669 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
29196592 AAATAAAATC
* *
29196602 ATAAATATTTACAT-ATATAGGTATATA-GATT
1 ATAAA-ATATACATAATATAAGTATATACG-TT
*
29196633 ATAAAATATATATAATATAAGTATATACGTT
1 ATAAAATATACATAATATAAGTATATACGTT
29196664 ATAAAA
1 ATAAAA
29196670 AAAGTATGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
30 6 0.19
31 25 0.78
32 1 0.03
ACGTcount: A:0.51, C:0.03, G:0.07, T:0.38
Consensus pattern (31 bp):
ATAAAATATACATAATATAAGTATATACGTT
Found at i:29196805 original size:11 final size:12
Alignment explanation
Indices: 29196776--29196805 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
29196766 ATACACGTAT
29196776 ATGTATATAAAA
1 ATGTATATAAAA
29196788 ATGTATATAAAA
1 ATGTATATAAAA
29196800 AT-TATA
1 ATGTATA
29196806 AAATATAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 4 0.22
12 14 0.78
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.37
Consensus pattern (12 bp):
ATGTATATAAAA
Found at i:29196958 original size:3 final size:3
Alignment explanation
Indices: 29196950--29196984 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
29196940 TAAATGAGGG
29196950 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
29196985 GAAAATAAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:29197648 original size:19 final size:20
Alignment explanation
Indices: 29197619--29197656 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
29197609 TCACAAAACA
*
29197619 AAATAAAAAATGAATAAAAT
1 AAATAAAAAATGAACAAAAT
29197639 AAAT-AAAAATGAACAAAA
1 AAATAAAAAATGAACAAAA
29197657 AAGGATTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.76, C:0.03, G:0.05, T:0.16
Consensus pattern (20 bp):
AAATAAAAAATGAACAAAAT
Found at i:29198559 original size:132 final size:132
Alignment explanation
Indices: 29198321--29211765 Score: 20629
Period size: 132 Copynumber: 102.4 Consensus size: 132
29198311 CCCTACAATC
* * * * * * * * *
29198321 TTGGGAAGATAAGATGCACTATCTTTGATATGTTCCACTACAGCTTAGGGAGACAAAATTTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * * * * * * *
29198386 TCTTCAACCTACTTCACTGCTGCTCAAGGAGATAGGGCTAATGACTCAAATCTGCTTCTCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29198451 TA
131 TA
* * * * * * * *
29198453 TTGGGAATATAAGATTTACCACCTTCGATCTGCTCCACTACTACATAGGGGGACATAATCTACAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * *
29198518 TCTTCAACCTACTCCCCAACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29198583 TA
131 TA
*
29198585 TT-GG--G--AAGATTCACCATCTTCGATCTGCTCCACTAATGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* *
29198645 TCTTCAACCTACTCAACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29198710 TA
131 TA
*** *
29198712 TTACAAAGATAAGTTTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
29198777 TCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29198842 TA
131 TA
* * * * * * *
29198844 TTGGGAAGATAACATTCATCATATTTGATCTGCTCCACTATTGTTTAGGGTGACAAAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * *
29198909 TCTTTAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATATGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29198974 TA
131 TA
* *
29198976 TTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTGCTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * *
29199041 TCTTCAACCTACTCCACTACTGCTCAGGGAGATTGGACTAATGGCTTAAATCTGCTTCTCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
*
29199106 TC
131 TA
* * *
29199108 TTGAGAAGATAAGATTCACCATCTTCGATCCGCTCCACGACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
29199173 TCTTCAACCTACTCCACTATTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29199238 TA
131 TA
*
29199240 TTTGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* *
29199305 TCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATAGCTTAAATCTGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29199370 TA
131 TA
* * * * * *
29199372 TTGGGAAGATAACATTCATCATATTCGATCTGCTCCACTATTGTTTAGGGTGACAAAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* ** *
29199437 TCTTTAACCTACTCCACTACTGCTTAGGGAAATAGGACTAATGGCTTAAATATGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29199502 TA
131 TA
* *
29199504 TTGGGAAGATAAGA-TCACCATCTTCAATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * *
29199568 TCTTCAACCTACTCCACTACTGCTCAGGGAGATTGGACTAATGGCTTAAATCTGCTTCTCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
*
29199633 TC
131 TA
* * * *
29199635 TTGAGAAGATAAGATTCACCATCTTCGATCCGCTCCACGACTGCTTAGGGTGACAGAATATGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
29199700 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCTACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29199765 TA
131 TA
* * *
29199767 TTTGGAAGATAAGATTCTCCATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* *
29199832 TCTTCAACCTACTCCACTTCTGCTTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29199897 TA
131 TA
* * * *
29199899 TTGGAAAGATAAGATTCACCATCTTCTATCTACTCCACTACTGCTTAGGGTGACATAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * *
29199964 TCTTCAACCTACTCCACTACTGGTTAGGGTGATAGGACTAATGACTTAAATCTGATTCTCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29200029 TA
131 TA
* *
29200031 TTGGGAAGATAGGATTTACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * * *
29200096 TCTTCAACCTACTCGACTACTACTTACGGTGGTAGGACTAATGGCTTAAATCTACTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
*
29200161 TG
131 TA
* *
29200163 TTGGGAAGATAAGAATCACCATCTTCGATGTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * *
29200228 TCTTCAACCTACTCCACTACTGCTCAGGGAGATTGGACTAATGGCTTAAATCT-C-T-TCCAC--
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29200288 TA
131 TA
* * * *
29200290 TTTGGAAGATAAGATTCACCATCTTCGATCCGCTCCACGACTGCTTAGGGTGACAGAATATGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
29200355 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29200420 TA
131 TA
*
29200422 TTTGGAAGATAAGAATTCACCATCTTCGAT-TGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 TTGGGAAGATAAG-ATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
* * * * *
29200486 ATCTTCAACCTACTCCACTACTGCTCAGGGAGATTGGACTAATGGCTTAAATCTACTTCCCCACT
65 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
* *
29200551 ATC
130 GTA
* * *
29200554 TTGAGAAGATAAGATTTACCATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
29200619 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29200684 TA
131 TA
* *
29200686 TTTGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGTGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
29200751 TCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29200816 TA
131 TA
* * * *
29200818 TTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAAAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * *
29200883 TCTTTAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTCCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29200948 TA
131 TA
*
29200950 TTGGGAAGATAAGATTCACCATCTTCGATC-GACTCCACTACTGCTTAGGGTGACAGAATATGCA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTG-CTCCACTACTGCTTAGGGTGACAGAATCTGCA
* *
29201014 ATCTTCAACCTACTCCACTACTGCTCAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCAC-
65 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
29201078 -TA
130 GTA
29201080 TT--GAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* *
29201143 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATTTCCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29201208 TA
131 TA
*
29201210 TTTGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
29201275 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29201340 TA
131 TA
*
29201342 TT-GGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGAC-GAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
29201405 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT-GCTTAAATCTGATTCTCCA---
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29201466 TA
131 TA
*
29201468 TTGGGAAGAT-AGATTTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTACA
1 TTGGGAAGATAAGA-TTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
*
29201532 ATCTTCAACCTACT-CACTACTACTTAGGGTG-TAGGACTAATGGCTTAAATCTGCTTCTCCACT
65 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
29201595 GTA
130 GTA
*
29201598 TTGGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
29201663 TCTTCAACCTACTCCACTACTGCTTAGGGTGAT-GGACTAATGGCTTAAATCTGCTTC-CCA--G
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29201724 TA
131 TA
**
29201726 TT-GGAAGATAAGATTCACCATCTTCGATCCACTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
29201790 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29201855 TA
131 TA
29201857 TT-GGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
29201921 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29201986 TA
131 TA
29201988 TTGGGAAGATAAGATTCACCATCTTCGATCTGCAT-CACTACTGCTTAGGGTGACAGAATCTGCA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCA
29202052 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
65 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
29202117 GTA
130 GTA
* * * * *
29202120 TT-GGAAGATAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAAGGTGACAAAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* *
29202184 TCTTTAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29202249 TA
131 TA
29202251 TT-GGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * *
29202315 TCTTCAACCTACTCCACTACTGCTTAGGGAGATTGGACTAATGGCTTAAATCTGCTTCTCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
*
29202380 TC
131 TA
* *
29202382 TTGAGAAGATAAGATTCACCATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
29202447 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29202512 TA
131 TA
* *
29202514 TTTGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
29202579 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29202644 TA
131 TA
*
29202646 TTGGAAAGATAAGATTCACCATCTTCGATCT-CTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
29202710 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAAT-GCTTAAATCTGCTTCTCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29202774 TA
131 TA
* *
29202776 TTGGGAAGATAAGATTCACCATCTTCGATCTACTCTACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* *
29202841 TCTTCAACCTACTCGACTACTGCTTAGGGTGGTAGGACTAATGGCTTAAATCTGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
*
29202906 TG
131 TA
*
29202908 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACAGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* *
29202973 TCTTCAACCTACTCCACTACTGCTTA-GGAGATTAGGACTAATGGCTTAAATCTACTTC-CCACT
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGA-TAGGACTAATGGCTTAAATCTGCTTCTCCACT
* *
29203036 ATT
130 GTA
* *
29203039 TTGAGAAGATAAGTTTCACCATCTTCGATC-GCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
29203103 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29203168 TA
131 TA
29203170 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* *
29203235 TCTTCAACCTACTCCACTACTGCTTAGGGAGAT-GGACTAAT-GCTTAAATCTACTTC-CCAC--
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29203295 TA
131 TA
* * *
29203297 TTGAGAAGATAAGATTCACCATCTTCGATCCGCTCCACGACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
29203362 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29203427 TA
131 TA
29203429 TT-GGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTA-GGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
29203492 TCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29203557 TA
131 TA
* * * * * *
29203559 TTGGGAAGATAACATTAATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAAAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * *
29203624 TCTTTAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTACTTCCCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29203689 TA
131 TA
*
29203691 TTGGGAAGATAAGATTCACCATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * *
29203756 TCTTCAACCTACTCCACTACTGCTCAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
*
29203821 TC
131 TA
*
29203823 TTGAGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* *
29203888 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATTTTCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29203953 TA
131 TA
* *
29203955 TTTGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
29204020 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29204085 TA
131 TA
* *
29204087 TTGGAAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * *
29204152 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGACTTAAATCTGATTCTCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29204217 TA
131 TA
* *
29204219 TTGGGAAGATAGGATTTACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * * * * *
29204284 TCTTCAACCTACTCGACTCCTACTTACGGTGGTAGGACTAATGGCTTAAATCTACTTCCCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
*
29204349 TG
131 TA
* *
29204351 TTGGGAAGATAAGAATCACCATCTTTGA--TGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * * *
29204414 TCTTCAACCTACTCCACTACTGCTTAGGGAGATTGGACTAATGGCTTAAATCTACTTCCCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
*
29204479 TC
131 TA
* * *
29204481 TTGAGAAGATAAGATTCACCATCTTCGATCCGCTCCACGACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
29204546 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29204611 TA
131 TA
* *
29204613 TTTGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTA-GGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * *
29204677 TCTTCAACCTACTCCACTACTGCTTAAGGAGATAGGACTAATGGCTTAAATCTACTTCTCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29204742 TA
131 TA
* *
29204744 TTTGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
29204809 TCTTCAACCTACTCCACTTCTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29204874 TA
131 TA
* * * *
29204876 TTGGGAAGATAAGATTCATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAAAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * *
29204941 TCTTTAACCTACTCCACTACTGCTTA-GGAGATAGGACTAATGGCTTAAATATGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29205005 TA
131 TA
* *
29205007 --GGGAAGATAAGA-TCACCATCTTCAATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * *
29205069 TCTTCAACCTACTCCACTACTGCTCAGGGAGATTGGACTAATGGCTTAAATCTGCTTCTCCAC--
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29205132 TA
131 TA
*
29205134 TT-GGAAGATAAGATTCACCATCTTCGATC-GCTCCACGACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
29205197 TCTTCAACCTACTCCACTATTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29205262 TA
131 TA
* *
29205264 TTTGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * *
29205329 TATTCAACCTACTCCACTTCTGCTTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCATTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29205394 TA
131 TA
29205396 TT-GGAAGATAAGATTCACCATCTTCGATCT--TCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
29205458 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29205523 TA
131 TA
* *
29205525 TTGGG-AG--AAGATTTATCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * *
29205587 TCTTCAACCTACTCGACTACTGCTTAGGGTGGTAGGACTAATGGCTTAAATCTACTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29205652 --
131 TA
29205652 TTGGGAAGATAAGA-TCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * *
29205716 TCTTCAACCTACTCCACTACTGCTTAGGGAGATTGGACTAATGGCTTAAATCTGCTTCTCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
*
29205781 TC
131 TA
* *
29205783 TTGAGAAGATAAGATTCACCATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
29205848 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29205913 TA
131 TA
*
29205915 TT-GGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTTAGGGTGACAGAATCTGCA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGC-TTAGGGTGACAGAATCTGCA
*
29205979 ATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
65 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
*
29206044 ATA
130 GTA
* * * * *
29206047 TTTGGAAGATAAGATTCACAATCTTCGATCTGCTCCACTATTACTTAGGGTGACAGAATCTGAAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * *
29206112 TCTTCAACCTACTCCACTTCTGCTTAGGGTGATAGGACTAATGACTTAAATATGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29206177 TA
131 TA
* *
29206179 TTGGAAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
29206244 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29206309 TA
131 TA
* *
29206311 TTTGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGTGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* *
29206376 TCTTCAACCTACTCCAC-ACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29206440 TA
131 TA
* * * *
29206442 TTTGGAAGATAAGATTCACAATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGAAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* ** *
29206507 TCTTCAACCTACTCCACTTCTGCTTAGGGTGATAGGACTAATGATTTAAATATGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29206572 TA
131 TA
* * * *
29206574 TTGGAAAGATAAGATTCACCATCTTCTATCTACTCCACTACTGCTTAGGGTGACATAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * * *
29206639 TTTTCAACCTACTCCACTACTGGTTAGGGTGATAGGACTAATGACTTAAATCTGATTCTCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29206704 TA
131 TA
* * *
29206706 TT-GGAAGATAGGATTTACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGGAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * * *
29206770 TCTTCAACCTACTCGACTACTACTTACGGTGGTAGGACTAATGGCTTAAATCTACTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
*
29206835 TG
131 TA
*
29206837 TTGGGAAGATAAGATTCACCATCATCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * *
29206902 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGAGTAATAGCTTAAATCTGCTTCT-CATTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29206966 TA
131 TA
** * * *
29206968 TTTAGAAGATGAGATTCACCATATTCGATCTGCTCCACTACTGCTCAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * *
29207033 TCTTCAACCTACTCCACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTT
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29207098 TA
131 TA
* *
29207100 TTGGGAAGATAAGATTCACTATCTTCGATCTGCTCCACTACTGCCTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * * * * * *
29207165 TCTTCAACCTAGTCCACCACTCCTTAGAGTGGTAGGACTAATGGCTTGAATCTGCTTCTACACTC
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
*
29207230 TC
131 TA
* *
29207232 TTGAGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACT-ATTAGGGTGACA-AATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * * * *
29207295 TCTTCGACCGAGTCCACTACTGCTTAGGGTGATTGGACTAATGGCTTAAATCTACTTCTCCACTT
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29207360 TA
131 TA
* * *
29207362 TTGGGAAAATAAGATTCACTATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTACAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * * * *
29207427 TCTTCAACCTAGTCCACCACTCCTTAGGGTGGTAGGACTAATGGCTTAAATCTGCTTCTACACTC
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
*
29207492 TC
131 TA
** ** *
29207494 TTAAGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTTATTAGGGTGA-AAAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * *
29207558 TCTTCGACCGACTCCACTACTGCTTAGGGTGATTGGACTAATGGCTTAAAT-TCGCTTCTCCACT
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCT-GCTTCTCCACT
29207622 GTA
130 GTA
* *
29207625 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTACTTAGGGTGACAAAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * *
29207690 TCTTTAACCTACTCCGCGACTGCTTAGGGTGATAGGACTAATAGCTTAAATCTGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29207755 TA
131 TA
*
29207757 TTGGGAAGATAAGATTCACCATTTTCGATCTGCAT-CACTACTGCTTAGGGTGACAGAATCTGCA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCA
* * *
29207821 ATCTTCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAATAGCTTAAATCTGCTTGTCCACT
65 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
29207886 GTA
130 GTA
**
29207889 TTGGGAAGATAAGATTCACCATCTTCGATCTATTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * * * *
29207954 TCTTCAACCTACTCGACTACTGCTTGGGGTGGTAGGACTAATGGCTTAGATCTACTTCTCTACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29208019 TA
131 TA
* * *
29208021 TTGGGAACATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGAAAGAATCAT-AA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC-TGCA
* * *
29208085 ATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATTGCTTAAATCTTCTTCTCCACT
65 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
*
29208150 GTT
130 GTA
* * * ** *
29208153 TTGGGAAGATAAGATTCACTATTTTCGGTCCACTCCACTACTGCTTAGGGTGACAGAATCTGTAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * * *
29208218 TCTTCAACCTACTCCACTGCTACTTAGGGAGATAGGACTAATGGCTTAAATCTTCTTCTCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29208283 TA
131 TA
* ** * *
29208285 TTAGGAAGATAAGATTCACCATCTTCGATCCACTCCACTACTGCTTAAGGTGACAGAGTCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * * *
29208350 TCTTCAACCTACTCCACTACTGCTTATGGAGATTGGGCTAATGGCTTAAATCTGCTTCTCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
*
29208415 TC
131 TA
* * *
29208417 TTGAGAAGATATGATTCACCATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * * * * * *
29208482 TCTTCAACCTACTCCACTACTACTTAGGGAGATTGGGCTAATGGCTTAAATCTGCTACTTCATTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
*
29208547 TC
131 TA
* * * * ** * * * *
29208549 TTGAGAAGATATGATTCGCCATCTTCAATCCACTCCACTACTACTTAGAGTGACAGTATCTCCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * *
29208614 TCTTCAACCCACTCCACTACTGCTTAGGCTGATAAGACTGATGGCTTAAATCTGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
*
29208679 TG
131 TA
* * *
29208681 TTGGGAAGATAAGAATCACCATCTTCGATCTGCTCGACTACTGCTTAGGGTGACAGAATCTGTAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * *
29208746 TCTTCAA-CTGACTCCACTACTACTTAGGGTGATAGGACTAATGGCTGAAATCTTCTTCTCCATT
66 TCTTCAACCT-ACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
29208810 GTA
130 GTA
* * * * * * *
29208813 TTTGGAAGATGAGATTCACCATATTCAATCTGCTCCACTACTGCTCAGGGTGGCAGAATCTGAAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * *
29208878 TCTTCATCCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTA
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
*
29208943 TT
131 TA
* * * *
29208945 TTGAGAAGATAGGATTCACCATCTTCGATCTGCTCCACTACTGCTTACGGTGGCAGAATCTG-AT
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA-
* * * **
29209009 ATCTTCAACCTACTCGACTACTGCTTAGGGTGGTAGGACGAATGGCTTAAATCCACTTCTCCACT
65 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
*
29209074 GTG
130 GTA
* * * * * * *
29209077 TTGGGAAGATAAGAATCACCATCTTCGATCTGCTCCACTACTTCTTTGGGTGACAAAACCAGTAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * *
29209142 TCTTCAACCGACACCACTACTGCTTAGGGTGAT-TGACTAATGGCTTAAATCTGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29209206 TA
131 TA
*
29209208 TTAGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
*
29209273 TCTTCAACCTACTCCGCTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
*
29209338 TG
131 TA
* *
29209340 TTGGGAAGATAACATTCACCATCTTCGATCTGCAT-CACTACTGCTTAAGGTGACAGAATCTGCA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCA
* * * *
29209404 ATCTTCAACCAACTCCACTACTGCTTAGGGTGATAGAACTAATAGTTTAAATCTGCTTCTCCACT
65 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
29209469 GTA
130 GTA
* * *
29209472 TTGGGAAGATAAGATTCACCATCTTGGATCTACTCCACTACTGCTTAGGGTGACAGACTCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * * *
29209537 TCTTCAACTTACTCGACTATTGCTTAGGGTGGTAGGACTAATGGCTTAAATCTTCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29209602 TA
131 TA
* * * *
29209604 TTGGGAACATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAAGGT-AAATGAATCAT-A
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACA-GAATC-TGC
*
29209667 AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTGATGGCTTAAATCTGCTTCTCCAC
64 AATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCAC
*
29209732 TATA
129 TGTA
* * * *
29209736 TTGGGAAGGTAAGATTCATCATATTCGATCTGATCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* *
29209801 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCATTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29209866 TA
131 TA
* * *
29209868 TTGGAAAGATAAGATTCACCATCATCGATCTGCTCCACTACTGCTTAGGGTGATAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * *
29209933 TCTTGAACCTACTCCACTACTGCTTAGGGTGATAGGAGTAATAGCTTAAATCTGCTTCTCCATTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29209998 TA
131 TA
** * * *
29210000 TTTAGAAGATGAGATTCACCATATTCGATCTGCTCCACTACTGCTCAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* *
29210065 TCTTCAACCTACTCCACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29210130 TA
131 TA
* * *
29210132 TTGGGAAGATAAGATTCACCATCATCGATCTGCTCCACTACTGCTTAAGGTGACAGAATCCGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * *
29210197 TCTTCAACCTACTCGACTACTACTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTT
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29210262 TA
131 TA
* * *
29210264 TTGAGAAGATAAGATTCACTATCTTCGATCTGCTCCACTACTGCCTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * * * * *
29210329 TCTTCAACCTAGTCCACCACTCCTTAGGGTGGTATGACTAATGGCTTAAATCTGCTTCTACACTC
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
*
29210394 TC
131 TA
* ** *
29210396 TTGAGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTTATTAGGGTGA-AAAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * * * *
29210460 TCTTCGACCGACTCCACTACTGCTTAGGGTGATTGGACTAATGGCTTAAGTCTACTTCTCCACTT
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29210525 TA
131 TA
*
29210527 TTGGGAAGATAAGATTCACTATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * * * * * *
29210592 TCTTCAACCTAGTCCACCACTCCTTAGGGTGGTAGGACTAATGGCTTAAATTTACTTCTACACTC
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
*
29210657 TC
131 TA
* ** *
29210659 TTGAGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTTATTAGGGTGA-AAAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * *
29210723 TCTTCGACCGACTCCACTACTGCTTAGGGTGATTGGACTAATGGCTTAAATCTGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29210788 TA
131 TA
*
29210790 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAAAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * *
29210855 TCTTTAACCTACTCCGCGACTGCTTAGGGTGATAGGACTAATAGCTTAAATCTGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29210920 TA
131 TA
*
29210922 TTGGGAAGATAAGATTCACCATCTTCGATCTGCAT-CACTACTACTTAGGGTGACAGAATCTGCA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGC-TCCACTACTGCTTAGGGTGACAGAATCTGCA
* *
29210986 ATCTTCAACCGACTCCACTACTGCTTAGGGTGATAGGACTAATAGCTTAAATCTGCTTCTCCACT
65 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
29211051 GTA
130 GTA
*
29211054 TTGGGAAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * * *
29211119 TCTTCAACCTACTCGACTACTGCTTGGGGTGGTAGGACTAATGGCTTAGATCTGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29211184 TA
131 TA
* * *
29211186 TTGGGAACATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGAAAGAATCAT-AA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC-TGCA
* * *
29211250 ATCTTTAACCTACTCCACTACTGCTTAGGGTGATTGGACTGATGGCTTAAATCTGCTTCTCCACT
65 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACT
29211315 GTA
130 GTA
* * * * * *
29211318 TTGGAAAGGTAAGATTCATCATATTCGATTTGCTCCACTACTGCTTAGGGTGACAGAATCTGTAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* * *
29211383 TCTTCGACCTACTCCACTACTGCTTACGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29211448 TA
131 TA
*
29211450 TTGGGAAGATAAGATTCATCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* *
29211515 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCAACCG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
*
29211580 TG
131 TA
* * * * * *
29211582 TTGGGAAGATAAGATTCACCAACTTCTATCTGATCCACTACTGCCTAGGGTGACAGAATCGGTAA
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
* *
29211647 TCTTCAACCAACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATATGCTTCTCCACTG
66 TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
29211712 TA
131 TA
*
29211714 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTTCTTAGGGTG
1 TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTG
29211766 GTAGGACTAA
Statistics
Matches: 12156, Mismatches: 1056, Indels: 202
0.91 0.08 0.02
Matches are distributed among these distances:
126 17 0.00
127 515 0.04
128 349 0.03
129 402 0.03
130 616 0.05
131 2029 0.17
132 8160 0.67
133 68 0.01
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (132 bp):
TTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAA
TCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTG
TA
Found at i:29199323 original size:44 final size:44
Alignment explanation
Indices: 29198996--29199333 Score: 135
Period size: 44 Copynumber: 7.7 Consensus size: 44
29198986 AAGATTCACC
* * *
29198996 ATCTTCGATCTACTCCACTGCTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGACAGAATCTGCA
* * ** *
29199040 ATCTTCAACCTACTCCACTACTGCTCAGGGAGATTGGA-CT--A
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGACAGAATCTGCA
* * * * * *
29199081 ATGGCTTAAATCTGCTTCTCCACTA-T-CTTGAGAAGAT-A-AGATTC-ACC
1 AT--CTTCAA-C--CTACTCCACTACTGCTT-AG--GGTGACAGAATCTGCA
* * *
29199128 ATCTTCGATCC-GCTCCACGACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTC-AACCTACTCCACTACTGCTTAGGGTGACAGAATCTGCA
* * *
29199172 ATCTTCAACCTACTCCACTATTGCTTAGGGTGATAGGA-CT--A
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGACAGAATCTGCA
* * * * * * * * ** * * * *
29199213 ATGGCTTAAATCTGCTTCTCCACTGTATTTGGAAGATAAGATTC-ACC
1 AT--CTTCAACCTACTCCACTACTG-CTTAGGGTGA-CAGAATCTGCA
* * *
29199260 ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAACCTACTCCACTACTGCTTAGGGTGACAGAATCTGCA
29199304 ATCTTCAACCTACTCCACTACTGCTTAGGG
1 ATCTTCAACCTACTCCACTACTGCTTAGGG
29199334 AGATAGGACT
Statistics
Matches: 206, Mismatches: 62, Indels: 52
0.64 0.19 0.16
Matches are distributed among these distances:
41 8 0.04
42 8 0.04
43 40 0.19
44 105 0.51
45 26 0.13
46 14 0.07
47 5 0.02
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (44 bp):
ATCTTCAACCTACTCCACTACTGCTTAGGGTGACAGAATCTGCA
Found at i:29199573 original size:44 final size:43
Alignment explanation
Indices: 29199523--29213748 Score: 2471
Period size: 44 Copynumber: 324.8 Consensus size: 43
29199513 TAAGATCACC
*
29199523 ATCTTCAATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * * *
29199567 ATCTTCAACCTACTCCACTACTGCTCAGGGAGATTGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * ** * * *
29199608 ATGGCTTAAATCTGCTTCTCCACTA-T-CTT-GAGAAGATAAGATTCACC
1 AT--CTTCAA--T-CTACTCCACTACTGCTTAG-GGTGAT-AGAATCTCA
* ** * * *
29199655 ATCTTCGATCCGCTCCACGACTGCTTAGGGTGACAGAATATGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29199699 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * ** * *
29199740 ATGGCTTAAATCTGCTTCTCTACTGTATTTGGAAGATAAGATTCTCC
1 AT--CTTCAATCTACTCCACTACTG-CTTAGGGTGAT-AGAATCTCA
* * * *
29199787 ATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * *
29199831 ATCTTCAACCTACTCCACTTCTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * ** * * *
29199872 ATGGCTTAAATATGCTTCTCCACTG-TATTGGAAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGG-GTGAT-AGAATCTCA
* * *
29199919 ATCTTCTATCTACTCCACTACTGCTTAGGGTGACATAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * *
29199963 ATCTTCAACCTACTCCACTACTGGTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * *
29200004 ATGACTTAAATCTGATTCTCCACTA-T-ATT-GGGAAGATAGGATTTACC
1 AT--CTTCAATCT-A--CTCCACTACTGCTTAGGG-TGATAGAATCT-CA
* * *
29200051 ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * * * *
29200095 ATCTTCAACCTACTCGACTACTACTTACGGTGGTAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * *
29200136 ATGGCTTAAATCTACTTCTCCACTG-TGTTGGGAAGATAAGAATCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
* * * *
29200183 ATCTTCGATGTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * * *
29200227 ATCTTCAACCTACTCCACTACTGCTCAGGGAGATTGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* ** * * *
29200268 ATGGCTTAAATCT-CTTCCACTA-T--TT-GGAAGATAAGATTCACC
1 AT--CTTCAATCTAC-TCCACTACTGCTTAGGGTGAT-AGAATCTCA
* ** * * *
29200310 ATCTTCGATCCGCTCCACGACTGCTTAGGGTGACAGAATATGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29200354 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * **
29200395 ATGGCTTAAATCTGCTTCTCCACTA-T-ATTTGGAAGATAAGAAT-TCA
1 AT--CTTCAA--T-CTACTCCACTACTGCTTAGGGTGAT-AGAATCTCA
* * *
29200441 CCATCTTCGAT-TGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 --ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * * *
29200486 ATCTTCAACCTACTCCACTACTGCTCAGGGAGATTGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* ** * *
29200527 ATGGCTTAAATCTACTTCCCCACTA-T-CTT-GAGAAGATA-AGATTTACC
1 AT--CTTCAATCTAC-T--CCACTACTGCTTAG-GGTGATAGA-ATCT-CA
* ** *
29200574 ATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29200618 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * ** * * *
29200659 ATGGCTTAAATCTGCTTCTCCACTA-T-ATTTGGAAGATAAGATTCACC
1 AT--CTTCAA--T-CTACTCCACTACTGCTTAGGGTGAT-AGAATCTCA
* * * *
29200706 ATCTTCGATCTGCTCCACTACTGCTTAGTGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * *
29200750 ATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * *
29200791 ATGGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTCATC-
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATC-TCA
* * * * * *
29200838 ATATTCGATCTGCTCCACTACTGTTTAGGGTGACAAAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * *
29200882 ATCTTTAACCTACTCCACTACTGCTTAGGGAGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * * * *
29200923 ATGGCTTAAATCTCCTTCTCCACTG-TATTGGGAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
* * * *
29200970 ATCTTCGATCGACTCCACTACTGCTTAGGGTGACAGAATATGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * *
29201014 ATCTTCAACCTACTCCACTACTGCTCAGGGAGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * ** * * *
29201055 ATGGCTTAAATCTGCTTCTCCACT-ATT--GAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCTTAGGGTGAT-AGAATCTCA
* * *
29201098 ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29201142 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * * ** * * *
29201183 ATGGCTTAAATTTCCTTCTCCACTGTATTTGGAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTG-CTTAGGGTGAT-AGAATCTCA
* * *
29201230 ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29201274 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * ** * * *
29201315 ATGGCTTAAATATGCTTCTCCACTG-TATTGGAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGGTGAT-AGAATCTCA
* *
29201361 ATCTTCGATCTACTCCACTACTGCTTAGGGTGA-CGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29201404 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * *
29201445 ATGCTTAAATCTGATTCTCCA-TA----TT-GGGAAGATAG-ATTTCA
1 AT-CTTCAATCT-A--CTCCACTACTGCTTAGGG-TGATAGAATCTCA
* * *
29201486 CCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTACA
1 --ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * *
29201532 ATCTTCAACCTACT-CACTACTACTTAGGGTG-TAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * * * *
29201571 ATGGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
** * *
29201618 ATCTTTGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29201662 ATCTTCAACCTACTCCACTACTGCTTAGGGTGAT-GGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * ** * * *
29201702 ATGGCTTAAATCTGCTTCC-C-AGT-ATT-GGAAGATAAGATTCACC
1 AT--CTTCAATCTAC-TCCACTACTGCTTAGGGTGAT-AGAATCTCA
* * *
29201745 ATCTTCGATCCACTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29201789 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * ** * * *
29201830 ATGGCTTAAATCTGCTTCTCCACTA-T-ATT-GGAAGATAAGATTCACC
1 AT--CTTCAA--T-CTACTCCACTACTGCTTAGGGTGAT-AGAATCTCA
* * *
29201876 ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29201920 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * *
29201961 ATGGCTTAAATCTGCTTCTCCACTA-T-ATT-GGGAAGATAAGATTCACC
1 AT--CTTCAA--T-CTACTCCACTACTGCTTAGGG-TGAT-AGAATCTCA
* * *
29202008 ATCTTCGATCTGCAT-CACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTAC-TCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29202052 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * ** *
29202093 ATGGCTTAAATCTGCTTCTCCACTG-TATTGGAAGATAAGATTCATC-
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGGTGAT-AGAATC-TCA
* * * * * * *
29202139 ATATTCGATCTGCTCCACTACTGTTTAAGGTGACAAAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * *
29202183 ATCTTTAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * ** * * *
29202224 ATGGCTTAAATATGCTTCTCCACTG-TATTGGAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGGTGAT-AGAATCTCA
* * *
29202270 ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * *
29202314 ATCTTCAACCTACTCCACTACTGCTTAGGGAGATTGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * ** * * *
29202355 ATGGCTTAAATCTGCTTCTCCACTA-T-CTT-GAGAAGATAAGATTCACC
1 AT--CTTCAA--T-CTACTCCACTACTGCTTAG-GGTGAT-AGAATCTCA
* ** *
29202402 ATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29202446 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * ** * * *
29202487 ATGGCTTAAATCTGCTTCTCCACTGTATTTGGAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTG-CTTAGGGTGAT-AGAATCTCA
* * * *
29202534 ATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29202578 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * ** * * *
29202619 ATGGCTTAAATCTGCTTCTCCACTG-TATTGGAAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGG-GTGAT-AGAATCTCA
* *
29202666 ATCTTCGATCT-CTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29202709 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * *
29202750 ATGCTTAAATCTGCTTCTCCACTA-T-ATT-GGGAAGATAAGATTCACC
1 AT-CTTCAA--T-CTACTCCACTACTGCTTAGGG-TGAT-AGAATCTCA
* * *
29202796 ATCTTCGATCTACTCTACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * *
29202840 ATCTTCAACCTACTCGACTACTGCTTAGGGTGGTAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * * * *
29202881 ATGGCTTAAATCTGCTTCTCCACTG-TGTTGGGAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
* * * *
29202928 ATCTTCGATCTGCTCCACTACAGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * *
29202972 ATCTTCAACCTACTCCACTACTGCTTA-GGAGATTAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGA-TAGAATCTCA
* * ** * *
29203013 ATGGCTTAAATCTACTTCCCACTA-T--TTTGAGAAGATA-AGTTTCA
1 AT--CTTCAATCTAC-T-CCACTACTGCTTAG-GGTGATAGAATCTCA
* * *
29203057 CCATCTTCGATC-GCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 --ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29203102 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * * * *
29203143 ATGGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
* * *
29203190 ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * *
29203234 ATCTTCAACCTACTCCACTACTGCTTAGGGAGAT-GGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * ** * * *
29203274 ATGCTTAAATCTACTTCC-C-ACT-ATT-GAGAAGATAAGATTCACC
1 AT-CTTCAATCTAC-TCCACTACTGCTTAG-GGTGAT-AGAATCTCA
* ** * *
29203317 ATCTTCGATCCGCTCCACGACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29203361 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * ** * * *
29203402 ATGGCTTAAATCTGCTTCTCCACTA-T-ATT-GGAAGATAAGATTCACC
1 AT--CTTCAA--T-CTACTCCACTACTGCTTAGGGTGAT-AGAATCTCA
* * *
29203448 ATCTTCGATCTGCTCCACTACTGCTTA-GGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * *
29203491 ATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * *
29203532 ATGGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATA-ACAT-T-A
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGATAGA-ATCTCA
* * * * *
29203576 ATCATATTCGATCTGCTCCACTACTGTTTAGGGTGACAAAATCTGCA
1 ATC---TTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * *
29203623 ATCTTTAACCTACTCCACTACTGCTTAGGGAGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * *
29203664 ATGGCTTAAATCTACTTCC-CCACTG-TATTGGGAAGATAAGATTCACC
1 AT--CTTCAATCTAC-TCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
* ** *
29203711 ATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * *
29203755 ATCTTCAACCTACTCCACTACTGCTCAGGGAGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * ** * * *
29203796 ATGGCTTAAATCTGCTTCTCCACTA-T-CTT-GAGAAGATAAGATTCACC
1 AT--CTTCAA--T-CTACTCCACTACTGCTTAG-GGTGAT-AGAATCTCA
* * *
29203843 ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29203887 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * * ** * * *
29203928 ATGGCTTAAATTTTCTTCTCCACTGTATTTGGAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTG-CTTAGGGTGAT-AGAATCTCA
* * * *
29203975 ATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29204019 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * ** * * *
29204060 ATGGCTTAAATATGCTTCTCCACTG-TATTGGAAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGG-GTGAT-AGAATCTCA
* *
29204107 ATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29204151 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * *
29204192 ATGACTTAAATCTGATTCTCCACTA-T-ATT-GGGAAGATAGGATTTACC
1 AT--CTTCAATCT-A--CTCCACTACTGCTTAGGG-TGATAGAATCT-CA
* * *
29204239 ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * * * * *
29204283 ATCTTCAACCTACTCGACTCCTACTTACGGTGGTAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * *
29204324 ATGGCTTAAATCTACTTCC-CCACTG-TGTTGGGAAGATAAGAATCACC
1 AT--CTTCAATCTAC-TCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
** * *
29204371 ATCTTTGA--TGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * *
29204413 ATCTTCAACCTACTCCACTACTGCTTAGGGAGATTGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* ** * * *
29204454 ATGGCTTAAATCTACTTCCCCACTA-T-CTT-GAGAAGATAAGATTCACC
1 AT--CTTCAATCTAC-T--CCACTACTGCTTAG-GGTGAT-AGAATCTCA
* ** * *
29204501 ATCTTCGATCCGCTCCACGACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29204545 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * ** * * *
29204586 ATGGCTTAAATCTGCTTCTCCACTA-T-ATTTGGAAGATAAGATTCACC
1 AT--CTTCAA--T-CTACTCCACTACTGCTTAGGGTGAT-AGAATCTCA
* * * *
29204633 ATCTTCGATCTGCTCCACTACTACTTA-GGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * *
29204676 ATCTTCAACCTACTCCACTACTGCTTAAGGAGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * ** * * *
29204717 ATGGCTTAAATCTACTTCTCCACTA-T-ATTTGGAAGATAAGATTCACC
1 AT--CTTCAATCTA---CTCCACTACTGCTTAGGGTGAT-AGAATCTCA
* * * *
29204764 ATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * *
29204808 ATCTTCAACCTACTCCACTTCTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * *
29204849 ATGGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTCATC-
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATC-TCA
* * * * * *
29204896 ATATTCGATCTGCTCCACTACTGTTTAGGGTGACAAAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * *
29204940 ATCTTTAACCTACTCCACTACTGCTTA-GGAGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * * *
29204980 ATGGCTTAAATATGCTTCTCCACTG--TAGGGAAGATA-AGATCACC
1 AT--CTTCAATCTACTCCACTACTGCTTAGGG-TGATAGA-ATCTCA
*
29205024 ATCTTCAATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * * *
29205068 ATCTTCAACCTACTCCACTACTGCTCAGGGAGATTGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * ** * * *
29205109 ATGGCTTAAATCTGCTTCTCCACT-ATT-GGAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCTTAGGGTGAT-AGAATCTCA
* * * *
29205153 ATCTTCGATC-GCTCCACGACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * *
29205196 ATCTTCAACCTACTCCACTATTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * ** * * *
29205237 ATGGCTTAAATCTGCTTCTCCACTGTATTTGGAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTG-CTTAGGGTGAT-AGAATCTCA
* * * *
29205284 ATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * *
29205328 ATATTCAACCTACTCCACTTCTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * * ** * * *
29205369 ATGGCTTAAATATGCTTCTCCATTG-TATTGGAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGGTGAT-AGAATCTCA
* *
29205415 ATCTTCGATCT--TCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29205457 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * *
29205498 ATGGCTTAAATCTGCTTCTCCACTA-T-ATT-GGGAGA-AGATTTATC-
1 AT--CTTCAA--T-CTACTCCACTACTGCTTAGGGTGATAGA-ATCTCA
* * *
29205542 ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * *
29205586 ATCTTCAACCTACTCGACTACTGCTTAGGGTGGTAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * *
29205627 ATGGCTTAAATCTACTTCTCCACTG-TT-GGGAAGATA-AGATCACC
1 AT--CTTCAATCTACTCCACTACTGCTTAGGG-TGATAGA-ATCTCA
* * *
29205671 ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * *
29205715 ATCTTCAACCTACTCCACTACTGCTTAGGGAGATTGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * ** * * *
29205756 ATGGCTTAAATCTGCTTCTCCACTA-T-CTT-GAGAAGATAAGATTCACC
1 AT--CTTCAA--T-CTACTCCACTACTGCTTAG-GGTGAT-AGAATCTCA
* ** *
29205803 ATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29205847 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * ** * * *
29205888 ATGGCTTAAATCTGCTTCTCCACTA-T-ATT-GGAAGATAAGATTCACC
1 AT--CTTCAA--T-CTACTCCACTACTGCTTAGGGTGAT-AGAATCTCA
* * * *
29205934 ATCTTCGATCTGCTCCACTACTACTTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGC-TTAGGGTGATAGAATCT-CA
* * *
29205979 ATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * ** * *
29206020 ATGGCTTAAATCTGCTTCTCCACTA-T-ATTTGGAAGATAAGATTCACA
1 AT--CTTCAA--T-CTACTCCACTACTGCTTAGGGTGAT-AGAATCTCA
* * * * * *
29206067 ATCTTCGATCTGCTCCACTATTACTTAGGGTGACAGAATCTGAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * *
29206111 ATCTTCAACCTACTCCACTTCTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * ** * * *
29206152 ATGACTTAAATATGCTTCTCCACTG-TATTGGAAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGG-GTGAT-AGAATCTCA
* *
29206199 ATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29206243 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * ** * * *
29206284 ATGGCTTAAATCTGCTTCTCCACTA-T-ATTTGGAAGATAAGATTCACC
1 AT--CTTCAA--T-CTACTCCACTACTGCTTAGGGTGAT-AGAATCTCA
* * * *
29206331 ATCTTCGATCTGCTCCACTACTGCTTAGTGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * *
29206375 ATCTTCAACCTACTCCAC-ACTGCTTAGGGAGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * ** * *
29206415 ATGGCTTAAATCTGCTTCTCCACTA-T-ATTTGGAAGATAAGATTCACA
1 AT--CTTCAA--T-CTACTCCACTACTGCTTAGGGTGAT-AGAATCTCA
* * * * *
29206462 ATCTTCGATCTGCTCCACTACTACTTAGGGTGACAGAATCTGAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * *
29206506 ATCTTCAACCTACTCCACTTCTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * * ** * * *
29206547 ATGATTTAAATATGCTTCTCCACTG-TATTGGAAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGG-GTGAT-AGAATCTCA
* * *
29206594 ATCTTCTATCTACTCCACTACTGCTTAGGGTGACATAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * *
29206638 ATTTTCAACCTACTCCACTACTGGTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * ** * * *
29206679 ATGACTTAAATCTGATTCTCCACTA-T-ATT-GGAAGATAGGATTTACC
1 AT--CTTCAATCT-A--CTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * *
29206725 ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGGA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * * * *
29206769 ATCTTCAACCTACTCGACTACTACTTACGGTGGTAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * * *
29206810 ATGGCTTAAATCTACTTCTCCACTG-TGTTGGGAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
* * * *
29206857 ATCATCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * *
29206901 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-GT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * ** ** ** * * *
29206942 ATAGCTTAAATCTGCTTCTCA-TTGTATTTA-GAAGATGAGATTCACC
1 AT--CTTCAATCTAC-TC-CACTACTGCTTAGGGTGAT-AGAATCTCA
* * * * *
29206988 ATATTCGATCTGCTCCACTACTGCTCAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * *
29207032 ATCTTCAACCTACTCCACTACTACTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * *
29207073 ATGGCTTAAATCTACTTCTCCACT--TTATTGGGAAGATAAGATTCACT
1 AT--CTTCAATCTACTCCACTACTGCTTA--GGG-TGAT-AGAATCTCA
* * * *
29207120 ATCTTCGATCTGCTCCACTACTGCCTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * * * * *
29207164 ATCTTCAACCTAGTCCACCACTCCTTAGAGTGGTAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * ** * * *
29207205 ATGGCTTGAATCTGCTTCTACACT-CT-CTT-GAGAAGATAAGATTCACC
1 AT--CTTCAATCTAC-TC--CACTACTGCTTAG-GGTGAT-AGAATCTCA
* * * *
29207252 ATCTTCGATCTGCTCCACTACT-ATTAGGGTGACA-AATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * * * *
29207294 ATCTTCGACCGAGTCCACTACTGCTTAGGGTGATTGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * ** * * *
29207335 ATGGCTTAAATCTACTTCTCCACT--TTATTGGGAAAATAAGATTCACT
1 AT--CTTCAATCTACTCCACTACTGCTTA--GGG-TGAT-AGAATCTCA
* * *
29207382 ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTACA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * * * *
29207426 ATCTTCAACCTAGTCCACCACTCCTTAGGGTGGTAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * ** * * *
29207467 ATGGCTTAAATCTGCTTCTACACT-CT-CTTAAGAAGATAAGATTCACC
1 AT--CTTCAATCTAC-TC--CACTACTGCTTAGGGTGAT-AGAATCTCA
* * ** *
29207514 ATCTTCGATCTGCTCCACTACTTATTAGGGTGA-AAAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * * *
29207557 ATCTTCGACCGACTCCACTACTGCTTAGGGTGATTGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * *
29207598 ATGGCTTAAATTCGCTTCTCCACT-GT-ATT-GGGAAGATAAGATTCACC
1 AT--CTTCAA-T--CTACTCCACTACTGCTTAGGG-TGAT-AGAATCTCA
* * * * *
29207645 ATCTTCGATCTGCTCCACTACTACTTAGGGTGACAAAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * * *
29207689 ATCTTTAACCTACTCCGCGACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * * * *
29207730 ATAGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
* * * *
29207777 ATTTTCGATCTGCAT-CACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTAC-TCCACTACTGCTTAGGGTGATAGAATCT-CA
* * *
29207821 ATCTTCAACCGACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * *** * * * * * *
29207862 ATAGCTTAAATCTGCTTGTCCACTG-TATTGGGAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
* * *
29207909 ATCTTCGATCTATTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * * *
29207953 ATCTTCAACCTACTCGACTACTGCTTGGGGTGGTAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * ** * * *
29207994 ATGGCTT-AGATCTACTTCTCTACTG-TATTGGGAACATAAGATTCACC
1 AT--CTTCA-ATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
* * * *
29208041 ATCTTCGATCTGCTCCACTACTGCTTAGGGTGAAAGAATCATAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATC-TCA
* * *
29208085 ATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * * * * *
29208126 ATTGCTTAAATCTTCTTCTCCACTGTTTTGGGAAGATAAGATTCACT
1 A-T-CTTCAATCTACTCCACTACTGCTTAGGG-TGAT-AGAATCTCA
* ** * * *
29208173 ATTTTCGGTCCACTCCACTACTGCTTAGGGTGACAGAATCTGTA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * * *
29208217 ATCTTCAACCTACTCCACTGCTACTTAGGGAGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * ** * * *
29208258 ATGGCTTAAATCTTCTTCTCCACTA-T-ATTAGGAAGATAAGATTCACC
1 AT--CTTCAA---TCTACTCCACTACTGCTTAGGGTGAT-AGAATCTCA
* * * * *
29208305 ATCTTCGATCCACTCCACTACTGCTTAAGGTGACAGAGTCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * * **
29208349 ATCTTCAACCTACTCCACTACTGCTTATGGAGATTG-GGCT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * ** * * *
29208390 ATGGCTTAAATCTGCTTCTCCACTA-T-CTT-GAGAAGATATGATTCACC
1 AT--CTTCAA--T-CTACTCCACTACTGCTTAG-GGTGATA-GAATCTCA
* ** *
29208437 ATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * * **
29208481 ATCTTCAACCTACTCCACTACTACTTAGGGAGATTG-GGCT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * ** * * *
29208522 ATGGCTTAAATCTGCTACTTCATTA-T-CTT-GAGAAGATATGATTCGCC
1 AT--CTTCAA--T-CTACTCCACTACTGCTTAG-GGTGATA-GAATCTCA
* * * * *
29208569 ATCTTCAATCCACTCCACTACTACTTAGAGTGACAGTATCTCCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * *
29208613 ATCTTCAACCCACTCCACTACTGCTTAGGCTGATA-AGA-CT-G
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGA-ATCTCA
* * * * * * * * *
29208654 ATGGCTTAAATCTGCTTCTCCACTG-TGTTGGGAAGATAAGAATCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
* * * * *
29208701 ATCTTCGATCTGCTCGACTACTGCTTAGGGTGACAGAATCTGTA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29208745 ATCTTCAA-CTGACTCCACTACTACTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCT-ACTCCACTACTGCTTAGGGTGATAGAATCTCA
** * * * * * * * ** * * *
29208786 ATGGCTGAAATCTTCTTCTCCATTGTATTTGGAAGATGAGATTCACC
1 AT--CTTCAATCTACTCCACTACTG-CTTAGGGTGAT-AGAATCTCA
* * * ** *
29208833 ATATTCAATCTGCTCCACTACTGCTCAGGGTGGCAGAATCTGAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
*
29208877 ATCTTC-ATCCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAAT-CTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * ** * ** *
29208918 ATGGCTTAAATCTACTTCTCCACTATTTTGAGAAGATAGGAT-TCA
1 AT--CTTCAATCTACTCCACTACTGCTTAG-GGTGATAGAATCTCA
* * * ** *
29208963 CCATCTTCGATCTGCTCCACTACTGCTTACGGTGGCAGAATCTGA
1 --ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * *
29209008 TATCTTCAACCTACTCGACTACTGCTTAGGGTGGTAGGA-C-GA
1 -ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * * *
29209050 ATGGCTTAAATCCACTTCTCCACTG-TGTTGGGAAGATAAGAATCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
* * * * * * *
29209097 ATCTTCGATCTGCTCCACTACTTCTTTGGGTGACAAAACCAGT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATC--TCA
* * * *
29209141 ATCTTCAACCGACACCACTACTGCTTAGGGTGATTG-A-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * ** * * *
29209181 ATGGCTTAAATCTGCTTCTCCACTGTATTAGGAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTG-CTTAGGGTGAT-AGAATCTCA
* * *
29209228 ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * *
29209272 ATCTTCAACCTACTCCGCTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * *
29209313 ATGGCTTAAATCTGCTTCTCCACTG-TGTTGGGAAGATA-ACAT-TCA
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGATAGA-ATCTCA
* * * *
29209358 CCATCTTCGATCTGCAT-CACTACTGCTTAAGGTGACAGAATCTGCA
1 --ATCTTCAATCTAC-TCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29209404 ATCTTCAACCAACTCCACTACTGCTTAGGGTGATAGAA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * * * * *
29209445 ATAGTTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
** * *
29209492 ATCTTGGATCTACTCCACTACTGCTTAGGGTGACAGACTCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * *
29209536 ATCTTCAA-CTTACTCGACTATTGCTTAGGGTGGTAGGA-CT-A
1 ATCTTCAATC-TACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * ** * * *
29209577 ATGGCTTAAATCTTCTTCTCCACTG-TATTGGGAACATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
* * * * *
29209624 ATCTTCGATCTGCTCCACTACTGCTTAAGGT-AAATGAATCATAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATA-GAATC-TCA
* * *
29209668 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-G
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * *
29209709 ATGGCTTAAATCTGCTTCTCCACTA-T-ATT-GGGAAGGTAAGATTCATC-
1 AT--CTTCAA--T-CTACTCCACTACTGCTTAGGG-TGAT-AGAATC-TCA
* * *
29209756 ATATTCGATCTGA-TCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCT-ACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29209800 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * ** * * *
29209841 ATGGCTTAAATCTACTTCTCCATTG-TATTGGAAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGG-GTGAT-AGAATCTCA
* * *
29209888 ATCATCGATCTGCTCCACTACTGCTTAGGGTGATAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * *
29209932 ATCTTGAACCTACTCCACTACTGCTTAGGGTGATAGGA-GT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * ** * * *
29209973 ATAGCTTAAATCTGCTTCTCCATTGTATTTA-GAAGATGAGATTCACC
1 AT--CTTCAATCTACTCCACTACTG--CTTAGGGTGAT-AGAATCTCA
* * * * *
29210020 ATATTCGATCTGCTCCACTACTGCTCAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * *
29210064 ATCTTCAACCTACTCCACTACTACTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * * *
29210105 ATGGCTTAAATCTACTTCTCCACTG-TATTGGGAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
* * * * * *
29210152 ATCATCGATCTGCTCCACTACTGCTTAAGGTGACAGAATCCGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAAT-CTCA
* * * *
29210196 ATCTTCAACCTACTCGACTACTACTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * ** * * *
29210237 ATGGCTTAAATCTACTTCTCCACT--TTATTGAGAAGATAAGATTCACT
1 AT--CTTCAATCTACTCCACTACTGCTTA--G-GGTGAT-AGAATCTCA
* * * *
29210284 ATCTTCGATCTGCTCCACTACTGCCTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * * *
29210328 ATCTTCAACCTAGTCCACCACTCCTTAGGGTGGTATG-A-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATA-GAATCTCA
* * ** * * *
29210369 ATGGCTTAAATCTGCTTCTACACT-CT-CTT-GAGAAGATAAGATTCACC
1 AT--CTTCAATCTAC-TC--CACTACTGCTTAG-GGTGAT-AGAATCTCA
* * ** *
29210416 ATCTTCGATCTGCTCCACTACTTATTAGGGTGA-AAAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * * *
29210459 ATCTTCGACCGACTCCACTACTGCTTAGGGTGATTGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * *
29210500 ATGGCTT-AAGTCTACTTCTCCACT--TTATTGGGAAGATAAGATTCACT
1 AT--CTTCAA-TCTACTCCACTACTGCTTA--GGG-TGAT-AGAATCTCA
* * *
29210547 ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * * * *
29210591 ATCTTCAACCTAGTCCACCACTCCTTAGGGTGGTAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * ** * * *
29210632 ATGGCTTAAATTTACTTCTACACT-CT-CTT-GAGAAGATAAGATTCACC
1 AT--CTTCAATCTAC-TC--CACTACTGCTTAG-GGTGAT-AGAATCTCA
* * ** *
29210679 ATCTTCGATCTGCTCCACTACTTATTAGGGTGA-AAAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * * *
29210722 ATCTTCGACCGACTCCACTACTGCTTAGGGTGATTGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * * * *
29210763 ATGGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
* * * *
29210810 ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAAAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * * *
29210854 ATCTTTAACCTACTCCGCGACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * * * *
29210895 ATAGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
* * * *
29210942 ATCTTCGATCTGCAT-CACTACTACTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTAC-TCCACTACTGCTTAGGGTGATAGAATCT-CA
* * *
29210986 ATCTTCAACCGACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * * * *
29211027 ATAGCTTAAATCTGCTTCTCCACTG-TATTGGGAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
* *
29211074 ATCTTCGATCTACTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * * *
29211118 ATCTTCAACCTACTCGACTACTGCTTGGGGTGGTAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * ** * * *
29211159 ATGGCTT-AGATCTGCTTCTCCACTG-TATTGGGAACATAAGATTCACC
1 AT--CTTCA-ATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
* * * *
29211206 ATCTTCGATCTGCTCCACTACTGCTTAGGGTGAAAGAATCATAA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATC-TCA
* * * * *
29211250 ATCTTTAACCTACTCCACTACTGCTTAGGGTGATTGGA-CT-G
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * *
29211291 ATGGCTTAAATCTGCTTCTCCACTGTATTGGAAAGGT-A-AGATTCATC-
1 AT--CTTCAATCTACTCCACTACTG-CTT---AGGGTGATAGAATC-TCA
* * * * * *
29211338 ATATTCGATTTGCTCCACTACTGCTTAGGGTGACAGAATCTGTA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * *
29211382 ATCTTCGACCTACTCCACTACTGCTTACGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * *
29211423 ATGGCTTAAATCTACTTCTCCACTG-TATTGGGAAGATAAGATTCATC-
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATC-TCA
* * *
29211470 ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29211514 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * *
29211555 ATGGCTTAAATCTGCTTCTCAACCGTG-TT-GGGAAGATAAGATTCACCA
1 AT--CTTCAATCTACTCCACTA-C-TGCTTAGGG-TGAT-AGAATC-TCA
* * *
29211603 A-CTTCTATCTGA-TCCACTACTGCCTAGGGTGACAGAATCGGT-A
1 ATCTTCAATCT-ACTCCACTACTGCTTAGGGTGATAGAATC--TCA
* * *
29211646 ATCTTCAACCAACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * * * * *
29211687 ATGGCTTAAATATGCTTCTCCACTG-TATTGGGAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
* * * * *
29211734 ATCTTCGATCTGCTCCACTACTTCTTAGGGTGGTAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * ** *
29211775 ATGGCTTAAATCTGCTTCTCCACTA-T-ATT-GGGAACATAGGAT-TCA
1 AT--CTTCAA--T-CTACTCCACTACTGCTTAGGG-TGATAGAATCTCA
* * * * * * *
29211820 CCATCTTCGATTTGCTCCACTATTGCTTCGGGTGAAAGAATCATAA
1 --ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATC-TCA
* * * * * *
29211866 ATCTTCAACCTATTCCATTACTGTTTAGGGTGATAGGA-CT-G
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * * * * *
29211907 GTGGTTTAAATCTATTTCTCCACTG-TATTGGGAAGGTAAGATTCATC-
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATC-TCA
* * * * * *
29211954 ATATTCGATCTGCTCCACTACTGCTTAAGGTGACAGAATCTGTA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * *
29211998 ATCTTCAACCTACTTCATTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * ** * * *
29212039 ATGGCTTAAATATATTCTCCA-T--TG-TATTGGGAACATAAGATTCACC
1 AT--CTTCAATCTA--CTCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
* * *
29212085 ATCTTCGATCTGA-TCCACTACTGCTTAGGGTGACAAAATCTACA
1 ATCTTCAATCT-ACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29212129 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * * *
29212170 ATGGCTTAAATCTGCTTCTCAACTG-TGTTGGGAAGATAAGATTCACCA
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATC-TCA
* * *
29212218 A-CTTCTATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29212261 ATCTTCAACCAACTCCACTACTGCTTAGGGTGATAGAA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * * * * *
29212302 TTGGCTTAAATCTTCTTCTCCACTG-TATTGGGAAGATAAGATTCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
* * *
29212349 ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTACA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * *
29212393 ATCTTCAACCTACTCGACTACTGCTTAGGGTGGTAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * ** * ** * * *
29212434 ATGGTTTAAATCTGCTTCTCCATTTTATTAAGAAGATAAGATTCACG
1 AT--CTTCAATCTACTCCACTA-CTGCTTAGGGTGAT-AGAATCTCA
* * * * *
29212481 ATCTTCGATCTGCTCCACTACTACTTAGGTTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * *
29212525 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATCGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * *
29212566 ATGGCTTCAATCTGCTTCTCCACTA-T-ATT-GGGAAGGTAAGATTTATC-
1 AT--CTTCAA--T-CTACTCCACTACTGCTTAGGG-TGAT-AGA-ATCTCA
* * * * * * *
29212613 ATATTCGATCTGCCCCACTACTGTTTAGGGTGACAGAATCTGTA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * *
29212657 ATATTCAACCTACTCCACTACTGCTTAGGGAGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * * * * *
29212698 ATGGCTTAAATCTTCTTCTCCACTGTTTTGGGAAGATAAGATTCACT
1 AT--CTTCAATCTACTCCACTACTGCTTAGGG-TGAT-AGAATCTCA
** * * *
29212745 ATCTTCGGTCCACTCCACTACTGCTTAGGGTGACAGAATCTGTA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * *
29212789 ATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * ** * * *
29212830 ATGGCTTAAATCTTCTTCTCCACTA-T-ATTAGGAAGATAAGATTCACC
1 AT--CTTCAA---TCTACTCCACTACTGCTTAGGGTGAT-AGAATCTCA
* * * * *
29212877 ATCTTCGATCCACTCCACTACTGCTTAAGGTGACAGAGTCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * * **
29212921 ATCTTCAACCTACTCCACTACTGCTTATGGAGATTG-GGCT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * ** * * *
29212962 ATGGCTTAAATTTACTTCTCCACTA-T-CTT-GAGAAGATATGATTCACC
1 AT--CTTCAA--T-CTACTCCACTACTGCTTAG-GGTGATA-GAATCTCA
* ** *
29213009 ATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * **
29213053 ATCTTCAACCTACTCCAC-ATCTGCTTAGGGAGATTG-GGCT-A
1 ATCTTCAATCTACTCCACTA-CTGCTTAGGGTGATAGAATCTCA
* * * ** * * *
29213094 ATGGCTTAAATCTGCTTCTTCATTA-T-CTT-GAGAAGATATGATTCACC
1 AT--CTTCAATCTAC-TC--CACTACTGCTTAG-GGTGATA-GAATCTCA
* *
29213141 ATCTTCAATCCACTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * * *
29213185 ATCTTCAACCTACTCCACTACTGCTTAGGCTGATAGGA-CT-G
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * * *
29213226 ATGGCTTAAATCTGCTTCTCCACTG-TGTTGGGAAGATAAGAATCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
* * * *
29213273 ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGTA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
*
29213317 ATCTTCAA-CTGACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCT-ACTCCACTACTGCTTAGGGTGATAGAATCTCA
** * * * * * * * ** * * *
29213358 ATGGCTGAAATCTGCTTCTCCATTGTATTTGGAAGATGAGATTCACC
1 AT--CTTCAATCTACTCCACTACTG-CTTAGGGTGAT-AGAATCTCA
* * * * *
29213405 ATATTCGATCTGCTCCACTACTGCTCAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* *
29213449 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * *
29213490 ATGGCTTAAATCTACTTCTCCACTG-TATTGGGAAGATAGGAT-TCA
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGATAGAATCTCA
* * *
29213535 CCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 --ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
* * *
29213581 ATCTTCAACCTACTCCACTACTGCTTAGGGTGGTAGGA-CT-A
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
* * * * * * * *
29213622 ATGGCTTAAATCTACTTCTCCACTG-TGTTGGGAAGATAAGAATCACC
1 AT--CTTCAATCTACTCCACTACTGCT-TAGGG-TGAT-AGAATCTCA
* * *
29213669 ATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCA
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCT-CA
*
29213713 ATCTTCAACCTACTCCACTACTGCTTAGGGTGATAG
1 ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAG
29213749 GACTAATGGC
Statistics
Matches: 9698, Mismatches: 3281, Indels: 2406
0.63 0.21 0.16
Matches are distributed among these distances:
38 1 0.00
39 40 0.00
40 57 0.01
41 451 0.05
42 598 0.06
43 2373 0.24
44 4085 0.42
45 1452 0.15
46 444 0.05
47 191 0.02
48 6 0.00
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.31
Consensus pattern (43 bp):
ATCTTCAATCTACTCCACTACTGCTTAGGGTGATAGAATCTCA
Found at i:29213783 original size:132 final size:132
Alignment explanation
Indices: 29211746--29213773 Score: 2939
Period size: 132 Copynumber: 15.4 Consensus size: 132
29211736 CTTCGATCTG
* * * *
29211746 CTCCACTACTTCTTAGGGTGGTAGGACTAATGGCTTAAATCTGCTTCTCCACTATATTGGGAACA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * * * * *
29211811 TAGGATTCACCATCTTCGATTTGCTCCACTATTGCTTCGGGTGAAAGAATCAT-AAATCTTCAAC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATC-TGCAATCTTCAAC
29211875 CTA
130 CTA
* * * ** * ** *
29211878 TTCCATTACTGTTTAGGGTGATAGGACTGGTGGTTTAAATCTATTTCTCCACTGTATTGGGAAGG
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * * *
29211943 TAAGATTCATCATATTCGATCTGCTCCACTACTGCTTAAGGTGACAGAATCTGTAATCTTCAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
29212008 TA
131 TA
* * * * * *
29212010 CTTCATTACTGCTTAGGGTGATAGGACTAATGGCTTAAATAT-ATTCTCCATTGTATTGGGAACA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * *
29212074 TAAGATTCACCATCTTCGATCTGATCCACTACTGCTTAGGGTGACAAAATCTACAATCTTCAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
29212139 TA
131 TA
* *
29212141 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCAACTGTGTTGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* *
29212206 TAAGATTCACCAACTTCTATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
*
29212271 AA
131 TA
* * *
29212273 CTCCACTACTGCTTAGGGTGATAGAACTATTGGCTTAAATCTTCTTCTCCACTGTATTGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
*
29212338 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTACAATCTTCAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
29212403 TA
131 TA
* * * * * **
29212405 CTCGACTACTGCTTAGGGTGGTAGGACTAATGGTTTAAATCTGCTTCTCCATTTTATTAAGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * *
29212470 TAAGATTCACGATCTTCGATCTGCTCCACTACTACTTAGGTTGACAGAATCTGCAATCTTCAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
29212535 TA
131 TA
* * * *
29212537 CTCCACTACTGCTTAGGGTGATCGGACTAATGGCTTCAATCTGCTTCTCCACTATATTGGGAAGG
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * * * * * *
29212602 TAAGATTTATCATATTCGATCTGCCCCACTACTGTTTAGGGTGACAGAATCTGTAATATTCAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
29212667 TA
131 TA
* * *
29212669 CTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTTCTTCTCCACTGTTTTGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * ** *
29212734 TAAGATTCACTATCTTCGGTCCACTCCACTACTGCTTAGGGTGACAGAATCTGTAATCTTCAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
29212799 TA
131 TA
* * * *
29212801 CTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTTCTTCTCCACTATATTAGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
** * *
29212866 TAAGATTCACCATCTTCGATCCACTCCACTACTGCTTAAGGTGACAGAGTCTGCAATCTTCAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
29212931 TA
131 TA
* * * * * * * * *
29212933 CTCCACTACTGCTTATGGAGATTGGGCTAATGGCTTAAATTTACTTCTCCACTATCTTGAGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* *
29212998 TATGATTCACCATCTTCGATCCGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
29213063 TA
131 TA
* * * * * * * *
29213065 CTCCAC-ATCTGCTTAGGGAGATTGGGCTAATGGCTTAAATCTGCTTCTTCATTATCTTGAGAAG
1 CTCCACTA-CTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAG
* * **
29213129 ATATGATTCACCATCTTCAATCCACTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAAC
65 ATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAAC
29213194 CTA
130 CTA
* * *
29213197 CTCCACTACTGCTTAGGCTGATAGGACTGATGGCTTAAATCTGCTTCTCCACTGTGTTGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* *
29213262 TAAGAATCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGTAATCTTCAA-C
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
29213326 TGA
131 T-A
* * *
29213329 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTGAAATCTGCTTCTCCATTGTATTTGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
* * *
29213394 TGAGATTCACCATATTCGATCTGCTCCACTACTGCTCAGGGTGACAGAATCTGCAATCTTCAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
29213459 TA
131 TA
*
29213461 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTACTTCTCCACTGTATTGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
*
29213526 TAGGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
29213591 TA
131 TA
* * *
29213593 CTCCACTACTGCTTAGGGTGGTAGGACTAATGGCTTAAATCTACTTCTCCACTGTGTTGGGAAGA
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
*
29213658 TAAGAATCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
66 TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
29213723 TA
131 TA
29213725 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTC
1 CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTC
29213774 AACCGTGTTG
Statistics
Matches: 1708, Mismatches: 182, Indels: 12
0.90 0.10 0.01
Matches are distributed among these distances:
131 121 0.07
132 1584 0.93
133 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (132 bp):
CTCCACTACTGCTTAGGGTGATAGGACTAATGGCTTAAATCTGCTTCTCCACTGTATTGGGAAGA
TAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGTGACAGAATCTGCAATCTTCAACC
TA
Found at i:29214072 original size:35 final size:35
Alignment explanation
Indices: 29214010--29214095 Score: 106
Period size: 35 Copynumber: 2.5 Consensus size: 35
29214000 ATTTTATTTG
*
29214010 TTTA-ATTATATAATTAATGATATTTAAA-TATAA
1 TTTATATTATATAATTAATGATAATTAAATTATAA
*
29214043 TTTATATTATATGAATTTATGATAATTAAATTATAA
1 TTTATATTATAT-AATTAATGATAATTAAATTATAA
* *
29214079 -TGATATTATATTATTAA
1 TTTATATTATATAATTAA
29214096 ATAAATCAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
33 4 0.09
34 11 0.24
35 25 0.56
36 5 0.11
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (35 bp):
TTTATATTATATAATTAATGATAATTAAATTATAA
Found at i:29214081 original size:25 final size:23
Alignment explanation
Indices: 29214037--29214097 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 23
29214027 TGATATTTAA
*
29214037 ATATAATTTATATTATATGA-ATTT
1 ATATAA-TTAAATTATATGATA-TT
29214061 ATGATAATTAAATTATAATGATATT
1 AT-ATAATTAAATTAT-ATGATATT
*
29214086 ATATTATTAAAT
1 ATATAATTAAAT
29214098 AAATCAAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 19 0.59
25 12 0.38
26 1 0.03
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (23 bp):
ATATAATTAAATTATATGATATT
Found at i:29215184 original size:24 final size:27
Alignment explanation
Indices: 29215147--29215210 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 27
29215137 AATTGCGGAT
*
29215147 TAATTATTG-ATTGAAAG-GTG-GAAA
1 TAATGATTGAATTGAAAGTGTGAGAAA
29215171 -AATGATTGAATTGAAAGTGTGAGAAA
1 TAATGATTGAATTGAAAGTGTGAGAAA
**
29215197 TTGTGATTGAATTG
1 TAATGATTGAATTG
29215211 GGATTATATG
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
23 7 0.21
24 8 0.24
25 3 0.09
26 4 0.12
27 11 0.33
ACGTcount: A:0.39, C:0.00, G:0.27, T:0.34
Consensus pattern (27 bp):
TAATGATTGAATTGAAAGTGTGAGAAA
Found at i:29221019 original size:34 final size:36
Alignment explanation
Indices: 29220981--29221054 Score: 98
Period size: 37 Copynumber: 2.1 Consensus size: 36
29220971 ATAAAAGCAT
* * *
29220981 AAATATTTAC-AT-ATATAGGTATATAGATTATAAA
1 AAATATATACAATAATATAAGTATATACATTATAAA
29221015 AAATATATACATATAATATAAGTATATACATTATAAA
1 AAATATATACA-ATAATATAAGTATATACATTATAAA
29221052 AAA
1 AAA
29221055 AGTGTGTATG
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
34 9 0.26
36 2 0.06
37 23 0.68
ACGTcount: A:0.55, C:0.04, G:0.05, T:0.35
Consensus pattern (36 bp):
AAATATATACAATAATATAAGTATATACATTATAAA
Found at i:29221057 original size:20 final size:20
Alignment explanation
Indices: 29220999--29221057 Score: 70
Period size: 18 Copynumber: 3.1 Consensus size: 20
29220989 ACATATATAG
*
29220999 GTATATAGATTAT-AAAAAA
1 GTATATACATTATAAAAAAA
* *
29221018 -TATATACA-TATAATATAA
1 GTATATACATTATAAAAAAA
29221036 GTATATACATTATAAAAAAA
1 GTATATACATTATAAAAAAA
29221056 GT
1 GT
29221058 GTGTATGTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
17 3 0.09
18 11 0.34
19 8 0.25
20 10 0.31
ACGTcount: A:0.56, C:0.03, G:0.07, T:0.34
Consensus pattern (20 bp):
GTATATACATTATAAAAAAA
Found at i:29222007 original size:19 final size:20
Alignment explanation
Indices: 29221970--29222007 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
29221960 GCACAAAACA
*
29221970 AAATAAAAAATGAATAAAAT
1 AAATAAAAAATGAACAAAAT
*
29221990 AAAT-AAAAATGACCAAAA
1 AAATAAAAAATGAACAAAA
29222008 AGGATTTGGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.16
Consensus pattern (20 bp):
AAATAAAAAATGAACAAAAT
Found at i:29222368 original size:26 final size:26
Alignment explanation
Indices: 29222326--29222376 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
29222316 ACCCTAGTTT
*
29222326 GGCTATTGTTTTTTTTGGGCCTGTTG
1 GGCTATTGTTTTATTTGGGCCTGTTG
29222352 GGCTATT-TTTTAATTTGGGCCTGTT
1 GGCTATTGTTTT-ATTTGGGCCTGTT
29222377 TGGGTTAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 4 0.17
26 19 0.83
ACGTcount: A:0.08, C:0.12, G:0.27, T:0.53
Consensus pattern (26 bp):
GGCTATTGTTTTATTTGGGCCTGTTG
Found at i:29222711 original size:58 final size:57
Alignment explanation
Indices: 29222592--29222739 Score: 158
Period size: 59 Copynumber: 2.5 Consensus size: 57
29222582 ATAGGATTAC
* * * * *
29222592 TATTGAATATGATTTAATAAAAAAAATAAAAAAATTTAATCATATTTTAATATAATAAT
1 TATTAAATATAATTTAAT-AAAAAAAT-ATAAAATTTAATCATATCTCAATATAATAAT
*
29222651 TATTAAATATAATTTAATAAAAATAATATATAATTTAATAGCAT-TCTCAATATAAT-AT
1 TATTAAATATAATTTAATAAAAA-AATATAAAATTTAAT--CATATCTCAATATAATAAT
29222709 TATTAAAATATGAA-TTAATAAAAAAATATAA
1 TATT-AAATAT-AATTTAATAAAAAAATATAA
29222740 TATATAATAT
Statistics
Matches: 77, Mismatches: 7, Indels: 11
0.81 0.07 0.12
Matches are distributed among these distances:
58 27 0.35
59 45 0.58
60 5 0.06
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (57 bp):
TATTAAATATAATTTAATAAAAAAATATAAAATTTAATCATATCTCAATATAATAAT
Found at i:29223948 original size:58 final size:58
Alignment explanation
Indices: 29223886--29224011 Score: 164
Period size: 58 Copynumber: 2.2 Consensus size: 58
29223876 TTTTAATAAG
* * *
29223886 ATTATTATTAAAAATAATTTAGTAAAAATAATAAATAATTTAACCATATT-TTAACATA
1 ATTATTATTAAAAATAATTTAAT-AAAATAATAAATAATTTAACAAAATTCTTAACATA
* * * * *
29223944 ATTATTGTTAAATATAATTTAATAAAATAATATATAATTTAATAAAATTCTTAATATA
1 ATTATTATTAAAAATAATTTAATAAAATAATAAATAATTTAACAAAATTCTTAACATA
29224002 ATTATTATTA
1 ATTATTATTA
29224012 TATGAATTAA
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
57 22 0.38
58 36 0.62
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.44
Consensus pattern (58 bp):
ATTATTATTAAAAATAATTTAATAAAATAATAAATAATTTAACAAAATTCTTAACATA
Found at i:29227796 original size:49 final size:49
Alignment explanation
Indices: 29227558--29228323 Score: 1346
Period size: 49 Copynumber: 15.9 Consensus size: 49
29227548 CCCTTCGAGA
* * * * *
29227558 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
29227605 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29227652 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29227699 CTTATCACATATATATACACTTTCA-ATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29227747 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29227796 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29227843 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29227892 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
29227939 CTTATCACATATATATACACTTTCACATTCATCACATCGACGATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29227988 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29228035 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29228084 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29228133 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29228182 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29228229 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
29228278 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
29228324 CGCCATACTA
Statistics
Matches: 693, Mismatches: 13, Indels: 24
0.95 0.02 0.03
Matches are distributed among these distances:
46 1 0.00
47 276 0.40
48 48 0.07
49 368 0.53
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:29227873 original size:96 final size:96
Alignment explanation
Indices: 29227558--29228323 Score: 1362
Period size: 96 Copynumber: 8.0 Consensus size: 96
29227548 CCCTTCGAGA
* * * * * * *
29227558 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
29227621 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
29227652 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
29227715 ACACTTTCA-ATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
29227747 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
29227812 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
29227843 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
29227908 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
29227939 CTTATCACATATATATACACTTTCACATTCATCACATCGACGATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
29228004 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
29228035 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
29228100 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
29228133 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
29228198 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
29228229 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
29228294 ACACTTTCACATTCATCACATCGGCCATTA
64 ACACTTTCACATTCATCACATCGGCCATTA
29228324 CGCCATACTA
Statistics
Matches: 650, Mismatches: 11, Indels: 18
0.96 0.02 0.03
Matches are distributed among these distances:
93 1 0.00
94 45 0.07
95 46 0.07
96 379 0.58
97 47 0.07
98 132 0.20
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:29227987 original size:145 final size:145
Alignment explanation
Indices: 29227558--29228323 Score: 1352
Period size: 145 Copynumber: 5.3 Consensus size: 145
29227548 CCCTTCGAGA
* * * * * * *
29227558 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
29227621 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
29227684 CATCGGCCATTAGGC
131 CATCGGCCATTAGGC
29227699 CTTATCACATATATATACACTTTCA-ATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
29227763 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCAT
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
29227826 CACATCGGCCATTAGGC
129 CACATCGGCCATTAGGC
29227843 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
29227908 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
* *
29227973 CATCGACGATTAGGC
131 CATCGGCCATTAGGC
29227988 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
29228051 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
64 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
29228116 CACATCGGCCATTAGGC
129 CACATCGGCCATTAGGC
29228133 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
29228198 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
66 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
29228263 CATCGGCCATTAGGC
131 CATCGGCCATTAGGC
29228278 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTA
29228324 CGCCATACTA
Statistics
Matches: 603, Mismatches: 11, Indels: 18
0.95 0.02 0.03
Matches are distributed among these distances:
141 10 0.02
142 25 0.04
143 106 0.18
144 111 0.18
145 304 0.50
147 47 0.08
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.32
Consensus pattern (145 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCA
CATCGGCCATTAGGC
Found at i:29231512 original size:9 final size:9
Alignment explanation
Indices: 29231498--29231536 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
29231488 TATTCAATTC
29231498 AAAAAAGAA
1 AAAAAAGAA
29231507 AAAAAAGAA
1 AAAAAAGAA
*
29231516 AGAAAAGAA
1 AAAAAAGAA
*
29231525 AATAAAATAA
1 AA-AAAAGAA
29231535 AA
1 AA
29231537 GAATGTGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
9 18 0.69
10 8 0.31
ACGTcount: A:0.85, C:0.00, G:0.10, T:0.05
Consensus pattern (9 bp):
AAAAAAGAA
Found at i:29232002 original size:23 final size:22
Alignment explanation
Indices: 29231970--29232552 Score: 200
Period size: 23 Copynumber: 25.5 Consensus size: 22
29231960 GCAGAACTTA
*
29231970 AACACTTCAATTTACAACATTT
1 AACACCTCAATTTACAACATTT
* * *
29231992 GAGCACCTCAATTTACAGCAATTA
1 -AACACCTCAATTTACAAC-ATTT
*
29232016 AACACTTCAATTTACAACATTT
1 AACACCTCAATTTACAACATTT
*
29232038 AAACACCTCAACTTACAACACTTT
1 -AACACCTCAATTTACAACA-TTT
*
29232062 AACATCC-CAATTAACAACATTT
1 AACA-CCTCAATTTACAACATTT
*
29232084 ATACACCTCAA-TTACAACGA-TA
1 A-ACACCTCAATTTACAAC-ATTT
* *
29232106 AACATCTCAATTTCTAGCAAC--TA
1 AACACCTCAA-TT-TA-CAACATTT
** * *
29232129 AACAATTCAATTTGCAGTAC-TTAA
1 AACACCTCAATTTACA--ACATT-T
*
29232153 AACACTTCAATTTACAACATTT
1 AACACCTCAATTTACAACATTT
* * *
29232175 AA-ATGCTTCAATTTGCAGCACTTT
1 AACA--CCTCAATTTACAACA-TTT
* * *
29232199 AACACTTCAATTCACATCATTT
1 AACACCTCAATTTACAACATTT
* * *
29232221 AAATACTTCAA-TTGCAACACTTT
1 -AACACCTCAATTTACAACA-TTT
* *
29232244 AACACTTCAATTTACAGCATTT
1 AACACCTCAATTTACAACATTT
* * *
29232266 AAACACTTCAATTTGCAGCACTTT
1 -AACACCTCAATTTACAACA-TTT
** * *
29232290 AACTTCTCTATTAACAACATTT
1 AACACCTCAATTTACAACATTT
*
29232312 ATACACCTCAA-TTACAACA-AT
1 A-ACACCTCAATTTACAACATTT
* * * * *
29232333 AACACATCTTAATTTCCAGCAACTA
1 AACAC--CTCAATTTACAAC-ATTT
** * *
29232358 AACAATTCAATTTGCAGTAC-TTAA
1 AACACCTCAATTTACA--ACATT-T
*
29232382 AACACTTCAATTTACAACATTT
1 AACACCTCAATTTACAACATTT
** *
29232404 AAACAATTCAATTTGCAACACTTT
1 -AACACCTCAATTTACAACA-TTT
* * * *
29232428 AACACTTCAATTCATAGCATTT
1 AACACCTCAATTTACAACATTT
* * * *
29232450 AAATACTTCAATTTGCAACA-CT
1 -AACACCTCAATTTACAACATTT
* * * *
29232472 AACTCTTCAATTTACAGCTTTT
1 AACACCTCAATTTACAACATTT
* * *
29232494 AAACACTTCAATTTGCAGCACTTT
1 -AACACCTCAATTTACAACA-TTT
* * *
29232518 AACATCTCTATTAACAACATTT
1 AACACCTCAATTTACAACATTT
29232540 ATACACCTCAATT
1 A-ACACCTCAATT
29232553 ACAGCAATAA
Statistics
Matches: 428, Mismatches: 90, Indels: 84
0.71 0.15 0.14
Matches are distributed among these distances:
20 6 0.01
21 26 0.06
22 71 0.17
23 260 0.61
24 55 0.13
25 10 0.02
ACGTcount: A:0.39, C:0.24, G:0.04, T:0.33
Consensus pattern (22 bp):
AACACCTCAATTTACAACATTT
Found at i:29232034 original size:46 final size:46
Alignment explanation
Indices: 29231967--29232575 Score: 267
Period size: 46 Copynumber: 13.3 Consensus size: 46
29231957 TTTGCAGAAC
* * *
29231967 TTAAACACTTCAATTTACAACATTTGAGCACCTCAATTTACAGCAA
1 TTAAACACTTCAATTTACAACATTTAAACACCTCAACTTACAGCAA
* *
29232013 TTAAACACTTCAATTTACAACATTTAAACACCTCAACTTACAACAC
1 TTAAACACTTCAATTTACAACATTTAAACACCTCAACTTACAGCAA
* * * * * *
29232059 TTTAACA-TCCCAATTAACAACATTTATACACCTCAA-TTACAACGA
1 TTAAACACT-TCAATTTACAACATTTAAACACCTCAACTTACAGCAA
* ** ** * * * *
29232104 -TAAACA-TCTCAATTT-CTAGCAACTAAACAATTCAATTTGCAGTAC
1 TTAAACACT-TCAATTTAC-AACATTTAAACACCTCAACTTACAGCAA
** * * * *
29232149 TTAAAACACTTCAATTTACAACATTTAAATGCTTCAATTTGCAGCAC
1 TT-AAACACTTCAATTTACAACATTTAAACACCTCAACTTACAGCAA
* * * * * * * *
29232196 TTTAACACTTCAATTCACATCATTTAAATACTTCAA-TTGCAACAC
1 TTAAACACTTCAATTTACAACATTTAAACACCTCAACTTACAGCAA
* * * * * *
29232241 TTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCAC
1 TTAAACACTTCAATTTACAACATTTAAACACCTCAACTTACAGCAA
* * * * * *
29232287 TTTAAC-TTCTCTATTAACAACATTTATACACCTCAA-TTACAACAA
1 TTAAACACT-TCAATTTACAACATTTAAACACCTCAACTTACAGCAA
* * ** ** * * * *
29232332 -TAACACATCTT-AATTTCCAGCAACTAAACAATTCAATTTGCAGTAC
1 TTAA-ACA-CTTCAATTTACAACATTTAAACACCTCAACTTACAGCAA
** * * * *
29232378 TTAAAACACTTCAATTTACAACATTTAAACAATTCAATTTGCAACAC
1 TT-AAACACTTCAATTTACAACATTTAAACACCTCAACTTACAGCAA
* * * * * * * * *
29232425 TTTAACACTTCAATTCATAGCATTTAAATACTTCAATTTGCAAC-A
1 TTAAACACTTCAATTTACAACATTTAAACACCTCAACTTACAGCAA
* * * * * * * *
29232470 CT-AACTCTTCAATTTACAGCTTTTAAACACTTCAATTTGCAGCAC
1 TTAAACACTTCAATTTACAACATTTAAACACCTCAACTTACAGCAA
* * * *
29232515 TTTAACA-TCTCTATTAACAACATTTATACACCTCAA-TTACAGCAA
1 TTAAACACT-TCAATTTACAACATTTAAACACCTCAACTTACAGCAA
*
29232560 TAAAACA-TCTCAATTT
1 TTAAACACT-TCAATTT
29232576 CCAGCAACTA
Statistics
Matches: 444, Mismatches: 100, Indels: 39
0.76 0.17 0.07
Matches are distributed among these distances:
43 1 0.00
44 61 0.14
45 100 0.23
46 207 0.47
47 71 0.16
48 4 0.01
ACGTcount: A:0.39, C:0.24, G:0.04, T:0.33
Consensus pattern (46 bp):
TTAAACACTTCAATTTACAACATTTAAACACCTCAACTTACAGCAA
Found at i:29232248 original size:91 final size:92
Alignment explanation
Indices: 29231956--29232552 Score: 450
Period size: 91 Copynumber: 6.5 Consensus size: 92
29231946 ATTATATATT
* * * * * * * *
29231956 ATTTGCAGA-ACTTAAACACTTCAATTTACAACATTTGAGCACCTCAATTTACAGCAATTAAACA
1 ATTTGCA-ACACTTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACA
*
29232020 CTTCAATTTACAACATTTAAACACCTCA
65 CTTCAATTTACAACATTTAAACACTTCA
* * * * * * * * **
29232048 ACTTACAACACTTTAACA-TCCCAATTAACAACATTTATACACCTCAA-TTACA--ACGATAA-A
1 ATTTGCAACACTTTAACACT-TCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACA
* ** *
29232108 CATCTCAATTT-CTAGCAACTAAACAATTCA
65 C-T-TCAATTTAC-AACATTTAAACACTTCA
** * * **
29232138 ATTTGCAGTACTTAAAACACTTCAATTTACAACATTTAAATGCTTCAATTTGCAGCACTTTAACA
1 ATTTGCAACACTT-TAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACA
* * *
29232203 CTTCAATTCACATCATTTAAATACTTCA
65 CTTCAATTTACAACATTTAAACACTTCA
*
29232231 A-TTGCAACACTTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAAC-T
1 ATTTGCAACACTTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACAC
* * * *
29232294 TCTCTATTAACAACATTTATACACCTCA
66 T-TCAATTTACAACATTTAAACACTTCA
* * * * ** * * *
29232322 A-TTACAACA--ATAACACATCTTAATTTCCAGCAACTAAACAATTCAATTTGCAGTACTTAAAA
1 ATTTGCAACACTTTAACAC-T-TCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTT-TAA
*
29232384 CACTTCAATTTACAACATTTAAACAATTCA
63 CACTTCAATTTACAACATTTAAACACTTCA
* * * * *
29232414 ATTTGCAACACTTTAACACTTCAATTCATAGCATTTAAATACTTCAATTTGCAACAC--TAACTC
1 ATTTGCAACACTTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACAC
* *
29232477 TTCAATTTACAGCTTTTAAACACTTCA
66 TTCAATTTACAACATTTAAACACTTCA
* * * * * *
29232504 ATTTGCAGCACTTTAACA-TCTCTATTAACAACATTTATACACCTCAATT
1 ATTTGCAACACTTTAACACT-TCAATTTACAGCATTTAAACACTTCAATT
29232553 ACAGCAATAA
Statistics
Matches: 394, Mismatches: 90, Indels: 44
0.75 0.17 0.08
Matches are distributed among these distances:
88 2 0.01
89 12 0.03
90 97 0.25
91 139 0.35
92 74 0.19
93 54 0.14
94 8 0.02
95 8 0.02
ACGTcount: A:0.39, C:0.24, G:0.04, T:0.33
Consensus pattern (92 bp):
ATTTGCAACACTTTAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACAC
TTCAATTTACAACATTTAAACACTTCA
Found at i:29232482 original size:228 final size:227
Alignment explanation
Indices: 29232016--29232610 Score: 940
Period size: 228 Copynumber: 2.6 Consensus size: 227
29232006 ACAGCAATTA
* * * * * * *
29232016 AACACTTCAATTTACAACATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACA
1 AACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACATCTCTATTAACAACA
* *
29232081 TTTATACACCTCAATTACAACGATAAACATCTCAATTTCTAGCAACTAAACAATTCAATTTGCAG
66 TTTATACACCTCAATTACAACAATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAG
*** *
29232146 TACTTAAAACACTTCAATTTACAACATTTAAATGCTTCAATTTGCAGCACTTTAACACTTCAATT
131 TACTTAAAACACTTCAATTTACAACATTTAAACAATTCAATTTGCAACACTTTAACACTTCAATT
*
29232211 CACATCATTTAAATACTTCAATTGCAACACTTT
196 CACAGCATTTAAATACTTCAATTGCAACAC-TT
*
29232244 AACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACTTCTCTATTAACAACA
1 AACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACATCTCTATTAACAACA
*
29232309 TTTATACACCTCAATTACAACAATAACACATCTTAATTTCCAGCAACTAAACAATTCAATTTGCA
66 TTTATACACCTCAATTACAACAATAA-ACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCA
29232374 GTACTTAAAACACTTCAATTTACAACATTTAAACAATTCAATTTGCAACACTTTAACACTTCAAT
130 GTACTTAAAACACTTCAATTTACAACATTTAAACAATTCAATTTGCAACACTTTAACACTTCAAT
*
29232439 TCATAGCATTTAAATACTTCAATTTGCAACAC-T
195 TCACAGCATTTAAATACTTCAA-TTGCAACACTT
* *
29232472 AACTCTTCAATTTACAGCTTTTAAACACTTCAATTTGCAGCACTTTAACATCTCTATTAACAACA
1 AACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACATCTCTATTAACAACA
* * *
29232537 TTTATACACCTCAATTACAGCAATAAAACATCTCAATTTCCAGCAACTAAACACTTCAAATTGCA
66 TTTATACACCTCAATTACAACAAT-AAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCA
*
29232602 ATACTTAAA
130 GTACTTAAA
29232611 TAGGGCTTTA
Statistics
Matches: 339, Mismatches: 25, Indels: 6
0.92 0.07 0.02
Matches are distributed among these distances:
228 211 0.62
229 119 0.35
230 9 0.03
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (227 bp):
AACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAGCACTTTAACATCTCTATTAACAACA
TTTATACACCTCAATTACAACAATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAG
TACTTAAAACACTTCAATTTACAACATTTAAACAATTCAATTTGCAACACTTTAACACTTCAATT
CACAGCATTTAAATACTTCAATTGCAACACTT
Found at i:29238588 original size:65 final size:65
Alignment explanation
Indices: 29238471--29238601 Score: 185
Period size: 65 Copynumber: 2.0 Consensus size: 65
29238461 GGCAAAGCAC
*
29238471 GGGAAACAAGATGAACAAAGCTAAAACACAAATGGAAAAGACTCTAACCTTTC-GATTACTAACA
1 GGGAAACAAGATGAACAAAGCTAAAACACAAATGGAAAAGACTCTAAACTTTCAG-TTACTAACA
29238535 T
65 T
** * *
29238536 GGGAAACAAGATGAACAAAGCTAAAACATGAATGGAAAGGACT-TGAAACTTTCAGTTATTAACA
1 GGGAAACAAGATGAACAAAGCTAAAACACAAATGGAAAAGACTCT-AAACTTTCAGTTACTAACA
29238600 T
65 T
29238601 G
1 G
29238602 ACCTCTGAAC
Statistics
Matches: 59, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
64 1 0.02
65 57 0.97
66 1 0.02
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.20
Consensus pattern (65 bp):
GGGAAACAAGATGAACAAAGCTAAAACACAAATGGAAAAGACTCTAAACTTTCAGTTACTAACAT
Found at i:29246688 original size:3 final size:3
Alignment explanation
Indices: 29246682--29246710 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
29246672 TTTTTGTCAT
29246682 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
29246711 TAAAAGAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:29247439 original size:18 final size:19
Alignment explanation
Indices: 29247396--29247439 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
29247386 TAGAGCGCCT
*
29247396 CAAAATAAAATTGATATTA
1 CAAAATAAAATTGATACTA
* *
29247415 CACAATAAAATT-TTACTA
1 CAAAATAAAATTGATACTA
29247433 CAAAATA
1 CAAAATA
29247440 CTCATTCTAC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 10 0.48
19 11 0.52
ACGTcount: A:0.57, C:0.11, G:0.02, T:0.30
Consensus pattern (19 bp):
CAAAATAAAATTGATACTA
Found at i:29248315 original size:13 final size:12
Alignment explanation
Indices: 29248292--29248316 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
29248282 AAAATGAGTT
29248292 TGAGCAAAAAAA
1 TGAGCAAAAAAA
29248304 TGAGCAAAAAAA
1 TGAGCAAAAAAA
29248316 T
1 T
29248317 AAGTCTGTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.64, C:0.08, G:0.16, T:0.12
Consensus pattern (12 bp):
TGAGCAAAAAAA
Found at i:29250438 original size:30 final size:30
Alignment explanation
Indices: 29250402--29250798 Score: 458
Period size: 30 Copynumber: 13.2 Consensus size: 30
29250392 AACCAAAGGA
* * **
29250402 ATTTGTATATAGATAAACATTTTCGAATTG
1 ATTTGTATTTAGATATACATTGCCGAATTG
29250432 ATTTGTATTTAGATATACATTGCCGAATTG
1 ATTTGTATTTAGATATACATTGCCGAATTG
* *
29250462 ATTTGTATTT-G-GATACATTGCTGAATTG
1 ATTTGTATTTAGATATACATTGCCGAATTG
*
29250490 ATTTGTATATAGATATACATTGCCGAATTG
1 ATTTGTATTTAGATATACATTGCCGAATTG
* * *
29250520 ATTTGTATTTGGATATACATTGTCAAATTG
1 ATTTGTATTTAGATATACATTGCCGAATTG
* * *
29250550 ATTCGTATTTGGATATACATTTCCGAATTG
1 ATTTGTATTTAGATATACATTGCCGAATTG
* * *
29250580 ATTTGTATATAGATATACATTGTCGAATTT
1 ATTTGTATTTAGATATACATTGCCGAATTG
* *
29250610 ATTTTTATTTGGATATACATTGCCGAATTG
1 ATTTGTATTTAGATATACATTGCCGAATTG
* * *
29250640 ATTCGTATTTGGATATACATTGCCAAATTG
1 ATTTGTATTTAGATATACATTGCCGAATTG
*
29250670 ATTTGTATATAGATATACATT-CTCGAATTG
1 ATTTGTATTTAGATATACATTGC-CGAATTG
* * *
29250700 ATTTTTATATAGATATACATTGCCAAATTG
1 ATTTGTATTTAGATATACATTGCCGAATTG
* *
29250730 ATTCGTATTTGGATATACATTGCCGAATTG
1 ATTTGTATTTAGATATACATTGCCGAATTG
* * *
29250760 ATTTTTATATGTATACATATATATTGCCGAATTG
1 A--TTTGTAT-T-TAGATATACATTGCCGAATTG
29250794 ATTTG
1 ATTTG
29250799 AGCATTGGAT
Statistics
Matches: 311, Mismatches: 48, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
28 24 0.08
29 3 0.01
30 255 0.82
31 1 0.00
32 8 0.03
33 1 0.00
34 19 0.06
ACGTcount: A:0.31, C:0.10, G:0.16, T:0.44
Consensus pattern (30 bp):
ATTTGTATTTAGATATACATTGCCGAATTG
Found at i:29250619 original size:90 final size:90
Alignment explanation
Indices: 29250402--29250777 Score: 562
Period size: 90 Copynumber: 4.2 Consensus size: 90
29250392 AACCAAAGGA
* * * *
29250402 ATTTGTATATAGATAAACATTTTCGAATTGATTTGTATTTAGATATACATTGCCGAATTGATTTG
1 ATTTGTATATAGATATACATTGTCGAATTGATTTGTATTTAGATATACATTGCCAAATTGATTCG
*
29250467 TATTTGG--ATACATTGCTGAATTG
66 TATTTGGATATACATTGCCGAATTG
* * *
29250490 ATTTGTATATAGATATACATTGCCGAATTGATTTGTATTTGGATATACATTGTCAAATTGATTCG
1 ATTTGTATATAGATATACATTGTCGAATTGATTTGTATTTAGATATACATTGCCAAATTGATTCG
*
29250555 TATTTGGATATACATTTCCGAATTG
66 TATTTGGATATACATTGCCGAATTG
* * * *
29250580 ATTTGTATATAGATATACATTGTCGAATTTATTTTTATTTGGATATACATTGCCGAATTGATTCG
1 ATTTGTATATAGATATACATTGTCGAATTGATTTGTATTTAGATATACATTGCCAAATTGATTCG
*
29250645 TATTTGGATATACATTGCCAAATTG
66 TATTTGGATATACATTGCCGAATTG
* * *
29250670 ATTTGTATATAGATATACATTCTCGAATTGATTTTTATATAGATATACATTGCCAAATTGATTCG
1 ATTTGTATATAGATATACATTGTCGAATTGATTTGTATTTAGATATACATTGCCAAATTGATTCG
29250735 TATTTGGATATACATTGCCGAATTG
66 TATTTGGATATACATTGCCGAATTG
*
29250760 ATTTTTATAT-G-TATACAT
1 ATTTGTATATAGATATACAT
29250778 ATATATTGCC
Statistics
Matches: 263, Mismatches: 23, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
88 72 0.27
89 1 0.00
90 190 0.72
ACGTcount: A:0.31, C:0.10, G:0.15, T:0.44
Consensus pattern (90 bp):
ATTTGTATATAGATATACATTGTCGAATTGATTTGTATTTAGATATACATTGCCAAATTGATTCG
TATTTGGATATACATTGCCGAATTG
Found at i:29256939 original size:16 final size:17
Alignment explanation
Indices: 29256920--29256952 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
29256910 GTATAAAGGT
29256920 TAATTAA-GTAAAATAA
1 TAATTAATGTAAAATAA
*
29256936 TAATTAATGTTAAATAA
1 TAATTAATGTAAAATAA
29256953 ACAAAACAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (17 bp):
TAATTAATGTAAAATAA
Found at i:29257677 original size:30 final size:30
Alignment explanation
Indices: 29257641--29257918 Score: 367
Period size: 30 Copynumber: 9.3 Consensus size: 30
29257631 GTATATGTTT
* * *
29257641 TATACATTACTGAATTGATTTGTATATAGA
1 TATACATTGCCGAATTGATTTGTATTTAGA
29257671 TATACATTGCCGAATTGATTTGTATTTAGA
1 TATACATTGCCGAATTGATTTGTATTTAGA
* * *
29257701 TATACATTGCCGAATTGGTTCGTATTTGGA
1 TATACATTGCCGAATTGATTTGTATTTAGA
* ** *
29257731 TATATATTGCTAAATTGATTTGTATATAGA
1 TATACATTGCCGAATTGATTTGTATTTAGA
* *
29257761 TATACATTGCCAAATTGATTTGTATTTGGA
1 TATACATTGCCGAATTGATTTGTATTTAGA
* * *
29257791 TATACATTGCCGAATTTATTCGTATTTGGA
1 TATACATTGCCGAATTGATTTGTATTTAGA
* *
29257821 TATACATTGCCAAATTGATTTGTATATAGA
1 TATACATTGCCGAATTGATTTGTATTTAGA
* * *
29257851 TATACATTGCCAAATTGATTCGTATTTGGA
1 TATACATTGCCGAATTGATTTGTATTTAGA
*
29257881 TATACATTGCCGAATTGATTTGTATATAGA
1 TATACATTGCCGAATTGATTTGTATTTAGA
29257911 TATACATT
1 TATACATT
29257919 TTGGATATAC
Statistics
Matches: 216, Mismatches: 32, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 216 1.00
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (30 bp):
TATACATTGCCGAATTGATTTGTATTTAGA
Found at i:29257806 original size:90 final size:90
Alignment explanation
Indices: 29257653--29257918 Score: 442
Period size: 90 Copynumber: 3.0 Consensus size: 90
29257643 TACATTACTG
* *
29257653 AATTGATTTGTATATAGATATACATTGCCGAATTGATTTGTATTTAGATATACATTGCCGAATTG
1 AATTGATTTGTATATAGATATACATTGCCAAATTGATTTGTATTTGGATATACATTGCCGAATTG
* * *
29257718 GTTCGTATTTGGATATATATTGCTA
66 ATTCGTATTTGGATATACATTGCCA
*
29257743 AATTGATTTGTATATAGATATACATTGCCAAATTGATTTGTATTTGGATATACATTGCCGAATTT
1 AATTGATTTGTATATAGATATACATTGCCAAATTGATTTGTATTTGGATATACATTGCCGAATTG
29257808 ATTCGTATTTGGATATACATTGCCA
66 ATTCGTATTTGGATATACATTGCCA
*
29257833 AATTGATTTGTATATAGATATACATTGCCAAATTGATTCGTATTTGGATATACATTGCCGAATTG
1 AATTGATTTGTATATAGATATACATTGCCAAATTGATTTGTATTTGGATATACATTGCCGAATTG
* * *
29257898 ATTTGTATATAGATATACATT
66 ATTCGTATTTGGATATACATT
29257919 TTGGATATAC
Statistics
Matches: 165, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
90 165 1.00
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (90 bp):
AATTGATTTGTATATAGATATACATTGCCAAATTGATTTGTATTTGGATATACATTGCCGAATTG
ATTCGTATTTGGATATACATTGCCA
Found at i:29257940 original size:43 final size:43
Alignment explanation
Indices: 29257875--29257961 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 43
29257865 TTGATTCGTA
* *
29257875 TTTGGATATACATTGCCGAATTGATTTGTATATAGATATACAT
1 TTTGGATATACATTGCCGAATTGAATTGCATATAGATATACAT
*
29257918 TTTGGATATACATTGCCTAATTGAATTGCATATAGATATACAT
1 TTTGGATATACATTGCCGAATTGAATTGCATATAGATATACAT
29257961 T
1 T
29257962 GCCGAATTGA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.33, C:0.10, G:0.15, T:0.41
Consensus pattern (43 bp):
TTTGGATATACATTGCCGAATTGAATTGCATATAGATATACAT
Found at i:29257968 original size:73 final size:73
Alignment explanation
Indices: 29257849--29257991 Score: 209
Period size: 73 Copynumber: 2.0 Consensus size: 73
29257839 TTTGTATATA
* * * *
29257849 GATATACATTGCCAAATTGATTCGTATTTGGATATACATTGCCGAATTGATTTGTATATAG-ATA
1 GATATACATTGCCAAATTGATTCGCATATAGATATACATTGCCGAATTGATTAGTATAT-GCATA
29257913 TACATTTTG
65 TACATTTTG
*
29257922 GATATACATTGCCTAATTGAATT-GCATATAGATATACATTGCCGAATTGATTAGTATATGCATA
1 GATATACATTGCCAAATTG-ATTCGCATATAGATATACATTGCCGAATTGATTAGTATATGCATA
29257986 TACATT
65 TACATT
29257992 ATCGAATTTA
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
72 1 0.02
73 59 0.94
74 3 0.05
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.39
Consensus pattern (73 bp):
GATATACATTGCCAAATTGATTCGCATATAGATATACATTGCCGAATTGATTAGTATATGCATAT
ACATTTTG
Found at i:29257987 original size:30 final size:28
Alignment explanation
Indices: 29257922--29258048 Score: 121
Period size: 30 Copynumber: 4.3 Consensus size: 28
29257912 ATACATTTTG
* *
29257922 GATATACATTGCCTAATTGAATTGCATAT
1 GATATACATTGCCGAATTG-ATTGTATAT
29257951 AGATATACATTGCCGAATTGATTAGTATAT
1 -GATATACATTGCCGAATTGATT-GTATAT
** * *
29257981 GCATATACATTATCGAATTTATTCGTATTT
1 G-ATATACATTGCCGAATTGATT-GTATAT
*
29258011 GGATATACATCGCCGAATTGATTTGTATAT
1 -GATATACATTGCCGAATTGA-TTGTATAT
29258041 G-TATACAT
1 GATATACAT
29258049 ATATATTGCC
Statistics
Matches: 81, Mismatches: 12, Indels: 10
0.79 0.12 0.10
Matches are distributed among these distances:
28 7 0.09
29 5 0.06
30 66 0.81
31 3 0.04
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (28 bp):
GATATACATTGCCGAATTGATTGTATAT
Found at i:29257998 original size:103 final size:103
Alignment explanation
Indices: 29257815--29258020 Score: 295
Period size: 103 Copynumber: 2.0 Consensus size: 103
29257805 TTTATTCGTA
* * * * *
29257815 TTTGGATATACATTGCCAAATTGATTTGTATATAGATATACATTGCCAAATTGATTCGTATTTGG
1 TTTGGATATACATTGCCAAATTGAATTGCATATAGATATACATTGCCAAATTGATTAGTATATGC
* *
29257880 ATATACATTGCCGAATTGATTTGTATATAGATATACAT
66 ATATACATTACCGAATTGATTCGTATATAGATATACAT
* *
29257918 TTTGGATATACATTGCCTAATTGAATTGCATATAGATATACATTGCCGAATTGATTAGTATATGC
1 TTTGGATATACATTGCCAAATTGAATTGCATATAGATATACATTGCCAAATTGATTAGTATATGC
* * * *
29257983 ATATACATTATCGAATTTATTCGTATTTGGATATACAT
66 ATATACATTACCGAATTGATTCGTATATAGATATACAT
29258021 CGCCGAATTG
Statistics
Matches: 90, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
103 90 1.00
ACGTcount: A:0.33, C:0.11, G:0.15, T:0.41
Consensus pattern (103 bp):
TTTGGATATACATTGCCAAATTGAATTGCATATAGATATACATTGCCAAATTGATTAGTATATGC
ATATACATTACCGAATTGATTCGTATATAGATATACAT
Found at i:29258026 original size:133 final size:131
Alignment explanation
Indices: 29257785--29258048 Score: 370
Period size: 133 Copynumber: 2.0 Consensus size: 131
29257775 TTGATTTGTA
* * * * *
29257785 TTTGGATATACATTGCCGAATTTATTCGTATTTGGATATACATTGCCAAATTGATTTGTATATAG
1 TTTGGATATACATTGCCGAATTAATTCGCATATAGATATACATTGCCAAATTGATTAGTATATAG
* *
29257850 ATATACATTGCCAAATTGATTCGTATTTGGATATACATTGCCGAATTGATTTGTATATAGATATA
66 ATATACATTACCAAATTGATTCGTATTTGGATATACATCGCCGAATTGATTTGTATAT-G-TATA
29257915 CAT
129 CAT
* *
29257918 TTTGGATATACATTGCCTAATTGAATT-GCATATAGATATACATTGCCGAATTGATTAGTATAT-
1 TTTGGATATACATTGCCGAATT-AATTCGCATATAGATATACATTGCCAAATTGATTAGTATATA
* * *
29257981 GCATATACATTATCGAATTTATTCGTATTTGGATATACATCGCCGAATTGATTTGTATATGTATA
65 G-ATATACATTACCAAATTGATTCGTATTTGGATATACATCGCCGAATTGATTTGTATATGTATA
29258046 CAT
129 CAT
29258049 ATATATTGCC
Statistics
Matches: 117, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
131 7 0.06
132 2 0.02
133 105 0.90
134 3 0.03
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.41
Consensus pattern (131 bp):
TTTGGATATACATTGCCGAATTAATTCGCATATAGATATACATTGCCAAATTGATTAGTATATAG
ATATACATTACCAAATTGATTCGTATTTGGATATACATCGCCGAATTGATTTGTATATGTATACA
T
Found at i:29268072 original size:57 final size:57
Alignment explanation
Indices: 29267998--29268119 Score: 235
Period size: 57 Copynumber: 2.1 Consensus size: 57
29267988 CTAGTTCAAC
*
29267998 CACATATAAACTCTTAATAATTCATTTCAACTAATATTAAAGTACTTCATTAAAATA
1 CACAAATAAACTCTTAATAATTCATTTCAACTAATATTAAAGTACTTCATTAAAATA
29268055 CACAAATAAACTCTTAATAATTCATTTCAACTAATATTAAAGTACTTCATTAAAATA
1 CACAAATAAACTCTTAATAATTCATTTCAACTAATATTAAAGTACTTCATTAAAATA
29268112 CACAAATA
1 CACAAATA
29268120 GGTGAAATTC
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 64 1.00
ACGTcount: A:0.48, C:0.16, G:0.02, T:0.34
Consensus pattern (57 bp):
CACAAATAAACTCTTAATAATTCATTTCAACTAATATTAAAGTACTTCATTAAAATA
Found at i:29269396 original size:17 final size:17
Alignment explanation
Indices: 29269374--29269410 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
29269364 GAAATTCAGC
*
29269374 AAAGCTTGGGTTTGGTG
1 AAAGCTTGGGTGTGGTG
29269391 AAAGCTTGGGTGTGGTG
1 AAAGCTTGGGTGTGGTG
29269408 AAA
1 AAA
29269411 TTTTGAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.24, C:0.05, G:0.41, T:0.30
Consensus pattern (17 bp):
AAAGCTTGGGTGTGGTG
Found at i:29269587 original size:27 final size:27
Alignment explanation
Indices: 29269548--29269605 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 27
29269538 TCATATTTGT
*
29269548 ATTAATTTAGATC-AAGAAAAGAAGAA
1 ATTAATTTAGATCGAAGAAAAGAAAAA
* * *
29269574 ATTAGATTTGGATCGAGGAAAATAAAAA
1 ATTA-ATTTAGATCGAAGAAAAGAAAAA
29269602 ATTA
1 ATTA
29269606 TCGAATAGTC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
26 4 0.15
27 8 0.31
28 14 0.54
ACGTcount: A:0.53, C:0.03, G:0.17, T:0.26
Consensus pattern (27 bp):
ATTAATTTAGATCGAAGAAAAGAAAAA
Found at i:29269740 original size:34 final size:35
Alignment explanation
Indices: 29269672--29269744 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
29269662 AATAATGTTA
* **
29269672 AATTGTATGTATTTATTTTGTACATAGCCAAATTG
1 AATTGTATGTATGTATAATGTACATAGCCAAATTG
* *
29269707 AATTGTATGTATGTATAAT-TACATTGCCGAATTG
1 AATTGTATGTATGTATAATGTACATAGCCAAATTG
29269741 AATT
1 AATT
29269745 TAGCATGGAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
34 17 0.52
35 16 0.48
ACGTcount: A:0.33, C:0.08, G:0.15, T:0.44
Consensus pattern (35 bp):
AATTGTATGTATGTATAATGTACATAGCCAAATTG
Found at i:29274815 original size:114 final size:114
Alignment explanation
Indices: 29274618--29275279 Score: 1020
Period size: 114 Copynumber: 5.8 Consensus size: 114
29274608 GTGTTTTCCA
* * *
29274618 GAAAGCGCCGC-AAAATACCTAAGCCCAACGACGCCGTTTTCCGAGCTTTCGAGGATTTAGCGGC
1 GAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGTGGC
* * * *
29274682 GTTTTTAAGAAAGCACCGCTAATGCTCAGGGCTTTAACGGCGTTTTTGA
66 GTTTTTAAGTAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGG
* * * * * *
29274731 GAAAGTGCCACAAAAAAATCTAAGCCCAACGACACCGTTTTCTGAGCTTTCGGGGATTTAGTGGT
1 GAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGTGGC
* * *
29274796 GTTTTTAGGTAAGCGCCGCTAATGCTCAGGTCTTTAGCGGCTTTTTTGG
66 GTTTTTAAGTAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGG
* *
29274845 GAAAGCGCCGCAAAAATATCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCAGGGATTTAGTGGC
1 GAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGTGGC
* * *
29274910 ATTTTTAAGTAAGTGCCGCTAATGCTCAGGGCTTTAGCGGCATTTTTGG
66 GTTTTTAAGTAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGG
*
29274959 GAAAGCGCCGCAAAAATACCTAAGGCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGTGGC
1 GAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGTGGC
* *
29275024 GTTTTTAAGTAAGCGTCGCTAATGCTCAAGGCTTTAGCGGCGTTTTTGG
66 GTTTTTAAGTAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGG
*
29275073 GAAAGCGCCGCAAAAATACCTAAGCCCAACTACGCCGTTTTCTGAGCTTTCGGGGATTTAGTGGC
1 GAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGTGGC
*
29275138 GTTTTTAAGTAATCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGG
66 GTTTTTAAGTAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGG
* * *
29275187 GAAATCGCAGCAAAAATACCTAAGCCCAACGATGCCGTTTTCTGAGCTTTCGGGGATTTAGTGGC
1 GAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGTGGC
* * **
29275252 ATTTCTAAGTAAGCGATGCTAATGCTCA
66 GTTTTTAAGTAAGCGCCGCTAATGCTCA
29275280 AGGATTTAAA
Statistics
Matches: 499, Mismatches: 49, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
113 9 0.02
114 490 0.98
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (114 bp):
GAAAGCGCCGCAAAAATACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGTGGC
GTTTTTAAGTAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGG
Found at i:29275910 original size:14 final size:14
Alignment explanation
Indices: 29275891--29275955 Score: 58
Period size: 14 Copynumber: 4.6 Consensus size: 14
29275881 TTAATGTGAT
* *
29275891 TTAAGGTTTATGGG
1 TTAAGGGTTAGGGG
29275905 TTAAGGGTTAGGGG
1 TTAAGGGTTAGGGG
* **
29275919 TTAGGGGTTAGATG
1 TTAAGGGTTAGGGG
* *
29275933 TTAAGAGTTAGGGA
1 TTAAGGGTTAGGGG
*
29275947 TTTAGGGTT
1 TTAAGGGTT
29275956 TATAAATTCA
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
14 39 1.00
ACGTcount: A:0.23, C:0.00, G:0.40, T:0.37
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:29276039 original size:7 final size:7
Alignment explanation
Indices: 29276029--29276062 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
29276019 TAAATAAGGT
29276029 TTAGGGG
1 TTAGGGG
*
29276036 TTAGGAG
1 TTAGGGG
29276043 TTAGGGG
1 TTAGGGG
*
29276050 TTAAGGG
1 TTAGGGG
29276057 TTAGGG
1 TTAGGG
29276063 ATTTAGGATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.50, T:0.29
Consensus pattern (7 bp):
TTAGGGG
Found at i:29276103 original size:14 final size:14
Alignment explanation
Indices: 29276026--29276120 Score: 60
Period size: 14 Copynumber: 7.0 Consensus size: 14
29276016 TATTAAATAA
29276026 GGTTTAGGGGTTAG
1 GGTTTAGGGGTTAG
29276040 GAG-TTAGGGGTTAAG
1 G-GTTTAGGGGTT-AG
*
29276055 GG-TTAGGGATTTA-
1 GGTTTAGGG-GTTAG
* *
29276068 GGATT--GGGTTAT
1 GGTTTAGGGGTTAG
29276080 GGTTTAGGGGTTAG
1 GGTTTAGGGGTTAG
*
29276094 GGATTT-GGGG-TCG
1 GG-TTTAGGGGTTAG
*
29276107 GGTTTAGGGTTTAG
1 GGTTTAGGGGTTAG
29276121 ATTAATTAGT
Statistics
Matches: 64, Mismatches: 7, Indels: 20
0.70 0.08 0.22
Matches are distributed among these distances:
11 3 0.05
12 9 0.14
13 9 0.14
14 34 0.53
15 9 0.14
ACGTcount: A:0.17, C:0.01, G:0.46, T:0.36
Consensus pattern (14 bp):
GGTTTAGGGGTTAG
Found at i:29276110 original size:33 final size:34
Alignment explanation
Indices: 29276043--29276120 Score: 95
Period size: 33 Copynumber: 2.3 Consensus size: 34
29276033 GGGTTAGGAG
* * *
29276043 TTAGGGGTTAAGGGTTAGGGATTTAGGATTGGG-
1 TTAGGGTTTAGGGGTTAGGGATTTAGGATCGGGT
* * *
29276076 TTATGGTTTAGGGGTTAGGGATTTGGGGTCGGGT
1 TTAGGGTTTAGGGGTTAGGGATTTAGGATCGGGT
29276110 TTAGGGTTTAG
1 TTAGGGTTTAG
29276121 ATTAATTAGT
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
33 27 0.73
34 10 0.27
ACGTcount: A:0.17, C:0.01, G:0.45, T:0.37
Consensus pattern (34 bp):
TTAGGGTTTAGGGGTTAGGGATTTAGGATCGGGT
Found at i:29276176 original size:83 final size:84
Alignment explanation
Indices: 29276083--29276244 Score: 229
Period size: 89 Copynumber: 1.9 Consensus size: 84
29276073 GGGTTATGGT
* **
29276083 TTAGGGGTTAGGGATTTGGGGTCGGGTTTAGGGTTT-A-GATTAATTAGTGTTTTTTAATTTATA
1 TTAGGGGTTAGGGATTTGGGGTCGAG-TTAGGGTTTAATGATTAATTAGTACTTTTTAATTTATA
29276146 TATTAAATAAAGTTTAGTGG
65 TATTAAATAAAGTTTAGTGG
29276166 TTAGGGGTTAGGGATTTGGGGTCGAGTTAGGGTTTAAGATTTGGATTAATTAGTACTTTTTAATT
1 TTAGGGGTTAGGGATTTGGGGTCGAGTTAGGGTTT-A-A--T-GATTAATTAGTACTTTTTAATT
29276231 TATATATTAAATAA
61 TATATATTAAATAA
29276245 GTTCTTTATA
Statistics
Matches: 69, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
82 9 0.13
83 25 0.36
85 1 0.01
89 34 0.49
ACGTcount: A:0.27, C:0.02, G:0.27, T:0.44
Consensus pattern (84 bp):
TTAGGGGTTAGGGATTTGGGGTCGAGTTAGGGTTTAATGATTAATTAGTACTTTTTAATTTATAT
ATTAAATAAAGTTTAGTGG
Found at i:29276361 original size:8 final size:8
Alignment explanation
Indices: 29276336--29276379 Score: 54
Period size: 8 Copynumber: 5.2 Consensus size: 8
29276326 TGAATATAAT
29276336 AATT-TAA
1 AATTGTAA
29276343 AATTGTAAA
1 AATTGT-AA
29276352 AATTGTAA
1 AATTGTAA
29276360 AATTGTAAAA
1 AATTGT--AA
29276370 AATTGTAA
1 AATTGTAA
29276378 AA
1 AA
29276380 ATTATAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
7 4 0.12
8 13 0.39
9 8 0.24
10 8 0.24
ACGTcount: A:0.57, C:0.00, G:0.09, T:0.34
Consensus pattern (8 bp):
AATTGTAA
Found at i:29276373 original size:10 final size:9
Alignment explanation
Indices: 29276341--29276389 Score: 73
Period size: 9 Copynumber: 5.4 Consensus size: 9
29276331 ATAATAATTT
29276341 AAAATTGTA
1 AAAATTGTA
29276350 AAAATTGT-
1 AAAATTGTA
29276358 AAAATTGTAA
1 AAAATTGT-A
29276368 AAAATTGTA
1 AAAATTGTA
*
29276377 AAAATTATA
1 AAAATTGTA
29276386 AAAA
1 AAAA
29276390 AGTAAAATAA
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
8 8 0.22
9 21 0.57
10 8 0.22
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.31
Consensus pattern (9 bp):
AAAATTGTA
Found at i:29276394 original size:27 final size:27
Alignment explanation
Indices: 29276341--29276396 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
29276331 ATAATAATTT
* **
29276341 AAAATTGTAAAAATTGTAAAATTGTAA
1 AAAATTGTAAAAATTATAAAAAAGTAA
29276368 AAAATTGTAAAAATTATAAAAAAGTAA
1 AAAATTGTAAAAATTATAAAAAAGTAA
29276395 AA
1 AA
29276397 TAAAAATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.29
Consensus pattern (27 bp):
AAAATTGTAAAAATTATAAAAAAGTAA
Found at i:29276429 original size:20 final size:19
Alignment explanation
Indices: 29276383--29276437 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
29276373 TGTAAAAATT
*
29276383 ATAAAAA-AGTAAAATAAAA
1 ATAAAAACAATAAAA-AAAA
29276402 ATAAAAACAATAAAAAATAA
1 ATAAAAACAATAAAAAA-AA
29276422 ATAAAAACAATAAAAA
1 ATAAAAACAATAAAAA
29276438 TTTTATTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
19 9 0.27
20 24 0.73
ACGTcount: A:0.80, C:0.04, G:0.02, T:0.15
Consensus pattern (19 bp):
ATAAAAACAATAAAAAAAA
Found at i:29276917 original size:18 final size:18
Alignment explanation
Indices: 29276894--29276935 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
29276884 TTTTGGCTGT
29276894 GAATTTAATGGGTTTTGC
1 GAATTTAATGGGTTTTGC
*
29276912 GAATTTGATGGGTTTTGC
1 GAATTTAATGGGTTTTGC
29276930 GAATTT
1 GAATTT
29276936 TAAATATTAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.21, C:0.05, G:0.29, T:0.45
Consensus pattern (18 bp):
GAATTTAATGGGTTTTGC
Found at i:29278807 original size:114 final size:113
Alignment explanation
Indices: 29278556--29278997 Score: 634
Period size: 113 Copynumber: 3.9 Consensus size: 113
29278546 AAAACAGGCT
* *
29278556 TTTAGCGGCGTTTTTGGAAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGTCGTTTTCTAAGCT
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCT
* *
29278621 TTCGGGGATTTAGCGGCGTTTTTATAAAGCGCCGCTAATGCTCAGGGC
66 TTCGGGGATTTAGCGGCGTTTTTAGAAAGCGCCGCTAATGCTTAGGGC
*
29278669 TTTAGCGGCGCTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCT
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCT
*
29278734 TTCGGGGATTTAGCAGCGTTTTTAAGAAAGCGCCGCTAATGCTTAGGGC
66 TTCGGGGATTTAGCGGCGTTTTT-AGAAAGCGCCGCTAATGCTTAGGGC
** * * * * *
29278783 TTTAGCGGCGTTTTTAAGAAAGCGCTGC-AAAAGACCTAATCCTAACGACGCCGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCT
* * * * *
29278847 TTCGGGGATTTAGCTGCGTTTTTGGAAAAGCACCGCTAATGCCTAGAGC
66 TTCGGGGATTTAGCGGCGTTTTTAG-AAAGCGCCGCTAATGCTTAGGGC
* * *
29278896 TTTAGCGACGTTTTTGGGAAAGCGCCGCAAAAAAAAACCTAAGCCCAACGACGCCGTTTTTTGAG
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGC--AAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAG
*
29278961 CTTTCGGGGCTTTAGCGGCGTTTTTGAGAAAGCGCCG
64 CTTTCGGGGATTTAGCGGCGTTTTT-AGAAAGCGCCG
29278998 AAAAAAAACC
Statistics
Matches: 292, Mismatches: 31, Indels: 9
0.88 0.09 0.03
Matches are distributed among these distances:
112 1 0.00
113 182 0.62
114 47 0.16
116 61 0.21
117 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (113 bp):
TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCT
TTCGGGGATTTAGCGGCGTTTTTAGAAAGCGCCGCTAATGCTTAGGGC
Found at i:29279034 original size:73 final size:73
Alignment explanation
Indices: 29278894--29279077 Score: 278
Period size: 73 Copynumber: 2.5 Consensus size: 73
29278884 AATGCCTAGA
* * *
29278894 GCTTTAGCGACGTTTTTGGGAAAGCGCCGCAAAAAAAAACCTAAGCCCAACGACGCCGTTTTTTG
1 GCTTTAGCGGCGTTTTTGAGAAAGCGCCG--AAAAAAAACCTAAGCCCAACGACGCCGTTTTCTG
29278959 AGCTTTCGGG
64 AGCTTTCGGG
*
29278969 GCTTTAGCGGCGTTTTTGAGAAAGCGCCGAAAAAAAACCTAAGCCCAACGACGCTGTTTTCTGAG
1 GCTTTAGCGGCGTTTTTGAGAAAGCGCCGAAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAG
*
29279034 CTTTCGGT
66 CTTTCGGG
* * *
29279042 GATTTAGCGGCGTTTTTGAAAAAGCGCCGCAAAAAA
1 GCTTTAGCGGCGTTTTTGAGAAAGCGCCGAAAAAAA
29279078 TATTTTATCT
Statistics
Matches: 101, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
73 74 0.73
75 27 0.27
ACGTcount: A:0.28, C:0.22, G:0.25, T:0.24
Consensus pattern (73 bp):
GCTTTAGCGGCGTTTTTGAGAAAGCGCCGAAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAG
CTTTCGGG
Found at i:29279642 original size:21 final size:22
Alignment explanation
Indices: 29279591--29279659 Score: 72
Period size: 21 Copynumber: 3.2 Consensus size: 22
29279581 GGGAGTATGA
* *
29279591 ATTTAAGGATT-AGGGATTAGTG
1 ATTTAAGGTTTAAGGG-TTAGGG
*
29279613 A-TTATGGTTTAAGGGTT-GGG
1 ATTTAAGGTTTAAGGGTTAGGG
29279633 ATTTAAGGTTTAAGGGTTAGGG
1 ATTTAAGGTTTAAGGGTTAGGG
*
29279655 GTTTA
1 ATTTA
29279660 GGGGTTAGAT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.08
21 24 0.62
22 12 0.31
ACGTcount: A:0.26, C:0.00, G:0.35, T:0.39
Consensus pattern (22 bp):
ATTTAAGGTTTAAGGGTTAGGG
Found at i:29279702 original size:14 final size:14
Alignment explanation
Indices: 29279593--29279707 Score: 60
Period size: 14 Copynumber: 8.1 Consensus size: 14
29279583 GAGTATGAAT
*
29279593 TTAAGGATTAGGGA
1 TTAAGGTTTAGGGA
* * *
29279607 TT-AGTGATTATGGT
1 TTAAG-GTTTAGGGA
*
29279621 TTAAGGGTT-GGGA
1 TTAAGGTTTAGGGA
29279634 TTTAAGGTTTAAGGG-
1 -TTAAGGTTT-AGGGA
* *
29279649 TTAGGGGTTTAGGGG
1 TTA-AGGTTTAGGGA
* *
29279664 TT-AGATATTAGGGG
1 TTAAGGT-TTAGGGA
29279678 TTAAGAG-TTAGGGA
1 TTAAG-GTTTAGGGA
29279692 TTAAGGTTTAGGGA
1 TTAAGGTTTAGGGA
29279706 TT
1 TT
29279708 CAGGGGTCGA
Statistics
Matches: 79, Mismatches: 11, Indels: 22
0.71 0.10 0.20
Matches are distributed among these distances:
13 7 0.09
14 58 0.73
15 11 0.14
16 3 0.04
ACGTcount: A:0.26, C:0.00, G:0.37, T:0.37
Consensus pattern (14 bp):
TTAAGGTTTAGGGA
Found at i:29279915 original size:14 final size:15
Alignment explanation
Indices: 29279880--29279921 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
29279870 TATTTTAATG
*
29279880 TTTAGGGAGTATGAA
1 TTTAGGGATTATGAA
29279895 TTTAGGGATTATGAA
1 TTTAGGGATTATGAA
29279910 -TTAGGGATTATG
1 TTTAGGGATTATG
29279922 GTTTAAGGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
14 12 0.46
15 14 0.54
ACGTcount: A:0.31, C:0.00, G:0.31, T:0.38
Consensus pattern (15 bp):
TTTAGGGATTATGAA
Found at i:29279985 original size:15 final size:15
Alignment explanation
Indices: 29279934--29279997 Score: 62
Period size: 15 Copynumber: 4.3 Consensus size: 15
29279924 TTAAGGGTTC
29279934 GGATTTAAGGTTTAG
1 GGATTTAAGGTTTAG
* *
29279949 GG-GTTAGGGGTTTAG
1 GGATTTA-AGGTTTAG
*
29279964 GG-GTTAAGAG-TTAG
1 GGATTTAAG-GTTTAG
29279978 GGATTTAAGGTTTAG
1 GGATTTAAGGTTTAG
29279993 GGATT
1 GGATT
29279998 CAGGGGTCGA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
14 11 0.27
15 30 0.73
ACGTcount: A:0.23, C:0.00, G:0.41, T:0.36
Consensus pattern (15 bp):
GGATTTAAGGTTTAG
Found at i:29280751 original size:81 final size:84
Alignment explanation
Indices: 29280663--29280827 Score: 237
Period size: 85 Copynumber: 2.0 Consensus size: 84
29280653 TAAAAAACGC
* * *
29280663 CGCAAAAAATAAATCAATTTATAAAAAA-TAAA-AAAAAA-TTTAGCATACCAAAACGGTGTCAT
1 CGCAAAAAATAAATCAATTTATAAAAAACAAAATAAAAAATTTTAGAATACCAAAACGGCGTCAT
29280725 TTTGATAAAAATGAAATAG
66 TTTGATAAAAATGAAATAG
* *
29280744 CGCAAAAAATAAATCAATTTATAAAAAACAAAATAAAAAATTTTTAGAATAGCAAAACGGCGTCG
1 CGCAAAAAATAAATCAATTTATAAAAAACAAAATAAAAAA-TTTTAGAATACCAAAACGGCGTCA
* *
29280809 TTTTGTTCAAAATGAAATA
65 TTTTGATAAAAATGAAATA
29280828 AAAACGCCGC
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
81 28 0.38
82 3 0.04
83 6 0.08
85 36 0.49
ACGTcount: A:0.54, C:0.10, G:0.10, T:0.25
Consensus pattern (84 bp):
CGCAAAAAATAAATCAATTTATAAAAAACAAAATAAAAAATTTTAGAATACCAAAACGGCGTCAT
TTTGATAAAAATGAAATAG
Found at i:29281019 original size:194 final size:190
Alignment explanation
Indices: 29280663--29281022 Score: 521
Period size: 194 Copynumber: 1.8 Consensus size: 190
29280653 TAAAAAACGC
29280663 CGCAAAAAATAAATCAATTTATAAAAAATAAAAAAAAATTTAGCATACCAAAACGGTGTCATTTT
1 CGCAAAAAATAAATCAATTTATAAAAAATAAAAAAAAATTTAGCATACCAAAACGGTGTCATTTT
29280728 GATAAAAATGAAATAGCGCAAAAAATAAATCAATTTATAAAAAACAAAATAAAAAATTTTTAGAA
66 GATAAAAATGAAATAGCG---AAAAT--AT--ATTTATAAAAAACAAAATAAAAAATTTTTAGAA
*
29280793 TAGCAAAACGGCGTCGTTTTGTTCAAAATGAAATAAAAACGCCGCTAAAGGTAAGCAATAGTGGC
124 TAGAAAAACGGCGTCGTTTTGTTCAAAATGAAATAAAAACGCCGCTAAAGGTAAGCAATAGTGGC
29280858 GT
189 GT
*
29280860 CGCAAAAAATAAATCAATTTATAAAAAAT-AAAAAAAATTTAGCATACCAAGACGGTGTCATTTT
1 CGCAAAAAATAAATCAATTTATAAAAAATAAAAAAAAATTTAGCATACCAAAACGGTGTCATTTT
**
29280924 GATAAAAATGAAATAGCG-ACGT-T-TTTATAAAAAAACGCCGCAAAAAATAAAAAATTTTTAGA
66 GATAAAAATGAAATAGCGAAAATATATTTAT-AAAAAA-----C--AAAATAAAAAATTTTTAGA
29280986 ATAGAAAAACGGCGTCGTTTTGTTCAAAATGAAATAA
123 ATAGAAAAACGGCGTCGTTTTGTTCAAAATGAAATAA
29281023 TTTTGCGGCG
Statistics
Matches: 151, Mismatches: 4, Indels: 19
0.87 0.02 0.11
Matches are distributed among these distances:
186 5 0.03
187 6 0.04
189 1 0.01
192 3 0.02
194 55 0.36
196 52 0.34
197 29 0.19
ACGTcount: A:0.51, C:0.11, G:0.13, T:0.25
Consensus pattern (190 bp):
CGCAAAAAATAAATCAATTTATAAAAAATAAAAAAAAATTTAGCATACCAAAACGGTGTCATTTT
GATAAAAATGAAATAGCGAAAATATATTTATAAAAAACAAAATAAAAAATTTTTAGAATAGAAAA
ACGGCGTCGTTTTGTTCAAAATGAAATAAAAACGCCGCTAAAGGTAAGCAATAGTGGCGT
Found at i:29281116 original size:130 final size:138
Alignment explanation
Indices: 29280967--29281312 Score: 440
Period size: 148 Copynumber: 2.5 Consensus size: 138
29280957 AACGCCGCAA
29280967 AAAATAAAAAATTTTTAGAATAGAAAAACGGCGTCGTTTTGTTCAAAATGAAATAATTTTGCGGC
1 AAAATAAAAAATTTTTAGAATAGAAAAACGGCGTCGTTTTGTTCAAAATGAAATAATTTTGCGGC
*
29281032 GTTTTTA-AAAA-CGCCGCTAAA-G-G-TA-A-G-TAAAAAA-GCCGAAAAAAATAAATCAATTT
66 GTTTTTACAAAATCGCAGCTAAAGGAGATACACGTTAAAAAACGCCG-AAAAAATAAATCAATTT
29281088 ATAAAAAAT
130 ATAAAAAAT
29281097 AAAATAAAAAATTTTTAGAATAGAAAAACGGCGTCGTTTTGTTCAAAATGAAATAATTTTGCGGC
1 AAAATAAAAAATTTTTAGAATAGAAAAACGGCGTCGTTTTGTTCAAAATGAAATAATTTTGCGGC
* *
29281162 ATTTTTACAAAATCGCAGCTAAAGGTAAGCAATAGCAGCGTTTTTTAAAAAACGCCGCAAAAATA
66 GTTTTTACAAAATCGCAGCTAAAGG--AG--ATA-CA-CG----TTAAAAAACGCCGAAAAAATA
29281227 AATCAATTTATAAAAAAT
121 AATCAATTTATAAAAAAT
* ** * * *
29281245 AAAATAAAAAATTTTTAGAATAGCAAAACGATGTCGTTTTGTTCAAAATAAAAAAAATTTTACGG
1 AAAATAAAAAATTTTTAGAATAGAAAAACGGCGTCGTTTTGTTCAAAAT-GAAATAATTTTGCGG
29281310 CGT
65 CGT
29281313 AACGCCGCTA
Statistics
Matches: 186, Mismatches: 10, Indels: 21
0.86 0.05 0.10
Matches are distributed among these distances:
130 71 0.38
131 4 0.02
132 9 0.05
133 1 0.01
136 1 0.01
139 2 0.01
141 1 0.01
143 1 0.01
148 78 0.42
149 18 0.10
ACGTcount: A:0.47, C:0.11, G:0.14, T:0.28
Consensus pattern (138 bp):
AAAATAAAAAATTTTTAGAATAGAAAAACGGCGTCGTTTTGTTCAAAATGAAATAATTTTGCGGC
GTTTTTACAAAATCGCAGCTAAAGGAGATACACGTTAAAAAACGCCGAAAAAATAAATCAATTTA
TAAAAAAT
Found at i:29281588 original size:25 final size:26
Alignment explanation
Indices: 29281538--29281588 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
29281528 TTTCATCTCC
* *
29281538 TCTTTCTTCTTCTTCTTCTTTTTATA
1 TCTTTCTTCTCCTTCTTCTTTATATA
*
29281564 TCTTTCTT-TCCTTCTTGTTTATATA
1 TCTTTCTTCTCCTTCTTCTTTATATA
29281589 GAGAGAGCTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.10, C:0.22, G:0.02, T:0.67
Consensus pattern (26 bp):
TCTTTCTTCTCCTTCTTCTTTATATA
Found at i:29283159 original size:17 final size:17
Alignment explanation
Indices: 29283120--29283158 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
29283110 TAATTTATTT
29283120 ATTTTTATTATTTTAGA
1 ATTTTTATTATTTTAGA
29283137 ATTTTTA-TATTTATA-A
1 ATTTTTATTATTT-TAGA
29283153 ATTTTT
1 ATTTTT
29283159 TCCTTATCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 12 0.57
17 9 0.43
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (17 bp):
ATTTTTATTATTTTAGA
Found at i:29286097 original size:43 final size:43
Alignment explanation
Indices: 29285990--29286244 Score: 246
Period size: 43 Copynumber: 5.9 Consensus size: 43
29285980 ATGATATGTT
* * * * * *
29285990 TTTAGCGGCGTTT-TTGAGAGAAGCGTCGTTAAAGGT-TTGTTC
1 TTTAGCGGCGTTTGTGGA-AAAAGCGCCGCTAAAGGTCATGGTC
* * * * *
29286032 TATAGCAGCGTTTGTGATAAAAAGCGCTGCTAAAGGTCATGGTT
1 TTTAGCGGCGTTTGTG-GAAAAAGCGCCGCTAAAGGTCATGGTC
* * * * * *
29286076 TTTAGCAGCGTTTATGGAAAAAGTGCCGCCAATGGTCATTGTC
1 TTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCATGGTC
* *
29286119 TTTAGCGGTGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCATGGTC
* *
29286162 TATAGCGGCATTTGT-GAAAAATGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGGAAAAA-GCGCCGCTAAAGGTCATGGTC
* * *
29286205 TTTAGTGGTGTTTGTGGAAGAAGCGCCGCTAAAGGTCATG
1 TTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCATG
29286245 ACCTTCAGTG
Statistics
Matches: 171, Mismatches: 37, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
42 16 0.09
43 132 0.77
44 23 0.13
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.30
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCATGGTC
Found at i:29286223 original size:129 final size:129
Alignment explanation
Indices: 29285990--29286243 Score: 303
Period size: 129 Copynumber: 2.0 Consensus size: 129
29285980 ATGATATGTT
* * * * * * *
29285990 TTTAGCGGCGTTTTTGAGAGAAGCGTCGTTAAAGGTTTGTTCTATAGCAGCGTTTGTGATAAAAA
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTATGGTCTATAGCAGCATTTGTGATAAAAA
* * * *
29286055 GCGCTGCTAAAGGTCATGGTTTTTAGCAGCGTTTATGGAAAAAGTGCCGCCAATGGTCATTGTC
66 GCGCCGCTAAAGGTCATGGTCTTTAGCAGCGTTTATGGAAAAAGCGCCGCCAAAGGTCATTGTC
* * *
29286119 TTTAGCGGTGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGTCTATAGCGGCATTTGTGA-AAAA
1 TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGT-ATGGTCTATAGCAGCATTTGTGATAAAA
* ** * * * *
29286183 TGCGCCGCTAAAGGTCATGGTCTTTAGTGGTGTTTGTGGAAGAAGCGCCGCTAAAGGTCAT
65 AGCGCCGCTAAAGGTCATGGTCTTTAGCAGCGTTTATGGAAAAAGCGCCGCCAAAGGTCAT
29286244 GACCTTCAGT
Statistics
Matches: 103, Mismatches: 21, Indels: 2
0.82 0.17 0.02
Matches are distributed among these distances:
129 84 0.82
130 19 0.18
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.30
Consensus pattern (129 bp):
TTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTATGGTCTATAGCAGCATTTGTGATAAAAA
GCGCCGCTAAAGGTCATGGTCTTTAGCAGCGTTTATGGAAAAAGCGCCGCCAAAGGTCATTGTC
Found at i:29290825 original size:20 final size:18
Alignment explanation
Indices: 29290792--29290829 Score: 58
Period size: 20 Copynumber: 2.0 Consensus size: 18
29290782 ATTGAATTTT
29290792 AATTAATATAAATAGACA
1 AATTAATATAAATAGACA
29290810 AATTAAATAGTAAATAGACA
1 AATT-AATA-TAAATAGACA
29290830 GATAAAATGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 4 0.22
20 10 0.56
ACGTcount: A:0.61, C:0.05, G:0.08, T:0.26
Consensus pattern (18 bp):
AATTAATATAAATAGACA
Found at i:29290837 original size:20 final size:19
Alignment explanation
Indices: 29290796--29290837 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
29290786 AATTTTAATT
*
29290796 AATATAAATAGACAAATTA
1 AATATAAATAGACAAATAA
*
29290815 AATAGTAAATAGACAGATAA
1 AATA-TAAATAGACAAATAA
29290835 AAT
1 AAT
29290838 GTTTTTGCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.62, C:0.05, G:0.10, T:0.24
Consensus pattern (19 bp):
AATATAAATAGACAAATAA
Found at i:29290910 original size:41 final size:40
Alignment explanation
Indices: 29290852--29291007 Score: 213
Period size: 41 Copynumber: 3.8 Consensus size: 40
29290842 TTGCGATGCT
* ** * *
29290852 TTTTCAAAAAAGCCGCTAAAGCCCCGAGCATTAGCGGCGC
1 TTTTCAAAAACGCCGCTAAAGATCTGAGCATTAGCGACGC
*
29290892 TTTTCTAAAAACGGCGCTAAAGATCTGAGCATTAGCGACGC
1 TTTTC-AAAAACGCCGCTAAAGATCTGAGCATTAGCGACGC
*
29290933 TTTTCCAAAAACGCCGCTAAAGATCTGAGCATTAGCGATGC
1 TTTT-CAAAAACGCCGCTAAAGATCTGAGCATTAGCGACGC
*
29290974 TTCTTCAAAAACGCCGCTAAAGATTTGAGCATTA
1 TT-TTCAAAAACGCCGCTAAAGATCTGAGCATTA
29291008 AAAAACGCCG
Statistics
Matches: 104, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
40 5 0.05
41 96 0.92
42 3 0.03
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (40 bp):
TTTTCAAAAACGCCGCTAAAGATCTGAGCATTAGCGACGC
Found at i:29291019 original size:28 final size:28
Alignment explanation
Indices: 29290980--29291035 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
29290970 ATGCTTCTTC
*
29290980 AAAAACGCCGCTAAAGATTTGAGCATTA
1 AAAAACGCCGCTAAAGATCTGAGCATTA
29291008 AAAAACGCCGCTAAAGATCTGAGCATTA
1 AAAAACGCCGCTAAAGATCTGAGCATTA
29291036 GCGGCGCTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.20
Consensus pattern (28 bp):
AAAAACGCCGCTAAAGATCTGAGCATTA
Found at i:29291050 original size:69 final size:69
Alignment explanation
Indices: 29290939--29291076 Score: 231
Period size: 69 Copynumber: 2.0 Consensus size: 69
29290929 ACGCTTTTCC
* * *
29290939 AAAAACGCCGCTAAAGATCTGAGCATTAGCGATGCTTCTTCAAAAACGCCGCTAAAGATTTGAGC
1 AAAAACGCCGCTAAAGATCTGAGCATTAGCGACGCTTCTTCAAAAACGCCGCTAAAGATCTAAGC
29291004 ATTA
66 ATTA
* *
29291008 AAAAACGCCGCTAAAGATCTGAGCATTAGCGGCGCTTCTTCAACAACGCCGCTAAAGATCTAAGC
1 AAAAACGCCGCTAAAGATCTGAGCATTAGCGACGCTTCTTCAAAAACGCCGCTAAAGATCTAAGC
29291073 ATTA
66 ATTA
29291077 GCGGCGCTTT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
69 64 1.00
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.22
Consensus pattern (69 bp):
AAAAACGCCGCTAAAGATCTGAGCATTAGCGACGCTTCTTCAAAAACGCCGCTAAAGATCTAAGC
ATTA
Found at i:29291068 original size:41 final size:41
Alignment explanation
Indices: 29291008--29291104 Score: 158
Period size: 41 Copynumber: 2.4 Consensus size: 41
29290998 TTGAGCATTA
*
29291008 AAAAACGCCGCTAAAGATCTGAGCATTAGCGGCGCTTCTTC
1 AAAAACGCCGCTAAAGATCTAAGCATTAGCGGCGCTTCTTC
* *
29291049 AACAACGCCGCTAAAGATCTAAGCATTAGCGGCGCTTTTTC
1 AAAAACGCCGCTAAAGATCTAAGCATTAGCGGCGCTTCTTC
*
29291090 AAAAATGCCGCTAAA
1 AAAAACGCCGCTAAA
29291105 AGACTGTTTT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.33, C:0.26, G:0.20, T:0.22
Consensus pattern (41 bp):
AAAAACGCCGCTAAAGATCTAAGCATTAGCGGCGCTTCTTC
Found at i:29291091 original size:110 final size:110
Alignment explanation
Indices: 29290898--29291104 Score: 326
Period size: 110 Copynumber: 1.9 Consensus size: 110
29290888 GCGCTTTTCT
* *
29290898 AAAAACGGCGCTAAAGATCTGAGCATTAGCGACGCTTTTCCAAAAACGCCGCTAAAGATCTGAGC
1 AAAAACGCCGCTAAAGATCTGAGCATTAGCGACGCTTTTCCAAAAACGCCGCTAAAGATCTAAGC
*
29290963 ATTAGCGATGCTTCTTCAAAAACGCCGCTAAAGATTTGAGCATTA
66 ATTAGCGACGCTTCTTCAAAAACGCCGCTAAAGATTTGAGCATTA
* *
29291008 AAAAACGCCGCTAAAGATCTGAGCATTAGCGGCGCTTCTT-CAACAACGCCGCTAAAGATCTAAG
1 AAAAACGCCGCTAAAGATCTGAGCATTAGCGACGCTT-TTCCAAAAACGCCGCTAAAGATCTAAG
* * *
29291072 CATTAGCGGCGCTTTTTCAAAAATGCCGCTAAA
65 CATTAGCGACGCTTCTTCAAAAACGCCGCTAAA
29291105 AGACTGTTTT
Statistics
Matches: 88, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
110 86 0.98
111 2 0.02
ACGTcount: A:0.34, C:0.24, G:0.20, T:0.22
Consensus pattern (110 bp):
AAAAACGCCGCTAAAGATCTGAGCATTAGCGACGCTTTTCCAAAAACGCCGCTAAAGATCTAAGC
ATTAGCGACGCTTCTTCAAAAACGCCGCTAAAGATTTGAGCATTA
Found at i:29301763 original size:17 final size:16
Alignment explanation
Indices: 29301731--29301764 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
29301721 AACTGAAACT
*
29301731 AAAAAAACAAATAAGA
1 AAAAAAACAAAGAAGA
29301747 AAAAAAACAAAAGAAGA
1 AAAAAAAC-AAAGAAGA
29301764 A
1 A
29301765 TGGAACGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.82, C:0.06, G:0.09, T:0.03
Consensus pattern (16 bp):
AAAAAAACAAAGAAGA
Found at i:29304271 original size:94 final size:91
Alignment explanation
Indices: 29304047--29304271 Score: 292
Period size: 91 Copynumber: 2.4 Consensus size: 91
29304037 AATTACCCGA
* * * * *
29304047 AGTATGTATGTATTAATAACTTGTTGAGACCAAATGCTGAGCAATTATAACTTATATTCTACGAG
1 AGTAAGTATGTATTAATAAATTGTTGAGACCAAATGTTGAGCAATTATAACTTATATCCTAAGAG
29304112 TTGAAGGAAGAATACTATAAATACTG
66 TTGAAGGAAGAATACTATAAATACTG
* * ***
29304138 AGTAAGTATGTATTGATAAAATGTTGAGACCAAATGTTGAGCAATTATGGGTTATATCCTAAGAG
1 AGTAAGTATGTATTAATAAATTGTTGAGACCAAATGTTGAGCAATTATAACTTATATCCTAAGAG
*
29304203 TTG-AGCGAAGAATA-TCATAATTACTGAGG
66 TTGAAG-GAAGAATACT-ATAAATACT---G
29304232 AGTAAGTATGTATTAATAAATTGTTGAGACCAAATGTTGA
1 AGTAAGTATGTATTAATAAATTGTTGAGACCAAATGTTGA
29304272 TATTTTAATT
Statistics
Matches: 116, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
90 3 0.03
91 74 0.64
94 39 0.34
ACGTcount: A:0.38, C:0.09, G:0.20, T:0.32
Consensus pattern (91 bp):
AGTAAGTATGTATTAATAAATTGTTGAGACCAAATGTTGAGCAATTATAACTTATATCCTAAGAG
TTGAAGGAAGAATACTATAAATACTG
Found at i:29304436 original size:26 final size:28
Alignment explanation
Indices: 29304407--29304461 Score: 78
Period size: 26 Copynumber: 2.0 Consensus size: 28
29304397 TTGTTTATAC
*
29304407 TTAAATTTTAA-TAAAA-ATTTAAAATA
1 TTAAATTTAAATTAAAACATTTAAAATA
*
29304433 TTAAATTTAAATTAAAACATTTTAAATA
1 TTAAATTTAAATTAAAACATTTAAAATA
29304461 T
1 T
29304462 ATATATAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 10 0.40
27 5 0.20
28 10 0.40
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.44
Consensus pattern (28 bp):
TTAAATTTAAATTAAAACATTTAAAATA
Found at i:29305420 original size:16 final size:14
Alignment explanation
Indices: 29305382--29305415 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
29305372 TTATAAAACA
*
29305382 TTATAAATATATAT
1 TTATAACTATATAT
*
29305396 TTATTACTATATAT
1 TTATAACTATATAT
29305410 TTATAA
1 TTATAA
29305416 AACTAAATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (14 bp):
TTATAACTATATAT
Done.