Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 113 of 189
Found at i:31629481 original size:40 final size:39
Alignment explanation
Indices: 31629434--31629564 Score: 165
Period size: 40 Copynumber: 3.3 Consensus size: 39
31629424 TAACTCATTC
* *
31629434 AATGCCTTCAGGACTTAACCC-GAATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGAA--TTAAAACTCGCACA
* *
31629474 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTA-AAACTCGCACA
*
31629514 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAA-AACTCGCACA
*
31629554 AATACCTTCGG
1 AATGCCTTCGG
31629565 ATCTTAGTCT
Statistics
Matches: 79, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
39 3 0.04
40 73 0.92
41 3 0.04
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.24
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGAATTAAAACTCGCACA
Found at i:31629504 original size:79 final size:80
Alignment explanation
Indices: 31629397--31629617 Score: 184
Period size: 80 Copynumber: 2.8 Consensus size: 80
31629387 CTCGTTCAAG
* * ** *
31629397 TGCCTTCGGGACATAGCCCGGTTATAGTAACTCATTC-AATGCCTTCAGGACTTAACCC-GAATT
1 TGCCTTCGGGACATAACCCGGATATAGTAACTCACACAAAGGCCTTCAGGACTTAACCCGGAA--
*
31629460 TTAA-AACTCGCACGAA
64 TTAATAACTCGCACAAA
* * * *
31629476 TGCCTTCGGGACTTAACCCGGA-ATTAGTATCTCGCACAAAGGCCTTCGGGACTTAACCCGGAAT
1 TGCCTTCGGGACATAACCCGGATA-TAGTAACTCACACAAAGGCCTTCAGGACTTAACCCGGAAT
31629540 TAATAACTCGCACAAA
65 TAATAACTCGCACAAA
* * ** * * * * *
31629556 TACCTTC-GGATCTTAGTCTGGATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TGCCTTCGGGA-CATAACCCGGATATAGTAACTCA-CACAAAGGCCTTCAGGACTTAACCCGGA
31629618 CAGCATTCAA
Statistics
Matches: 116, Mismatches: 19, Indels: 13
0.78 0.13 0.09
Matches are distributed among these distances:
78 1 0.01
79 35 0.30
80 70 0.60
81 10 0.09
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (80 bp):
TGCCTTCGGGACATAACCCGGATATAGTAACTCACACAAAGGCCTTCAGGACTTAACCCGGAATT
AATAACTCGCACAAA
Found at i:31635878 original size:82 final size:80
Alignment explanation
Indices: 31635748--31635947 Score: 213
Period size: 82 Copynumber: 2.5 Consensus size: 80
31635738 TTGTACTTTG
* * * * * *
31635748 GTACTCCTGGTTGTACAAACGTACCCCTGTTTGTACTTTGATACCCCTGATTGCACATATATGTA
1 GTACACCTGATTGCACATACGTACCCCTGTTTGTACTTTGATACCCCTGATTACACATACATG-A
* *
31635813 CCCTTATTTATACTTCA
65 CCC-TACTTATACTCCA
* * * *
31635830 GTTCCCCTGATTGCACATACGTGCCCCTGTTTGTA-TTTCGGTACCCCTGATTACACATACATGA
1 GTACACCTGATTGCACATACGTACCCCTGTTTGTACTTT-GATACCCCTGATTACACATACATGA
* *
31635894 CCCTACTTGTACTCCG
65 CCCTACTTATACTCCA
* * *
31635910 GTACACTTGATTTCACATACGTACCCCTGTTTATACTT
1 GTACACCTGATTGCACATACGTACCCCTGTTTGTACTT
31635948 CAATAATTCA
Statistics
Matches: 97, Mismatches: 19, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
80 38 0.39
81 9 0.09
82 50 0.52
ACGTcount: A:0.21, C:0.28, G:0.14, T:0.36
Consensus pattern (80 bp):
GTACACCTGATTGCACATACGTACCCCTGTTTGTACTTTGATACCCCTGATTACACATACATGAC
CCTACTTATACTCCA
Found at i:31635888 original size:40 final size:40
Alignment explanation
Indices: 31635731--31635937 Score: 132
Period size: 40 Copynumber: 5.1 Consensus size: 40
31635721 GACGATCATG
* * ** *
31635731 CCCCTATTTGTACTTT-GGTACTCCTGGTTGTACAAACGTA
1 CCCCTATTTGTA-TTTCGGTACCCCTGATTACACATACGTA
* * * *
31635771 CCCCTGTTTGTACTTT-GATACCCCTGATTGCACATATATGTA
1 CCCCTATTTGTA-TTTCGGTACCCCTGATT--ACACATACGTA
* * * * * * *
31635813 CCCTTATTTATACTTCAGTTCCCCTGATTGCACATACGTG
1 CCCCTATTTGTATTTCGGTACCCCTGATTACACATACGTA
* *
31635853 CCCCTGTTTGTATTTCGGTACCCCTGATTACACATACATGA
1 CCCCTATTTGTATTTCGGTACCCCTGATTACACATACGT-A
* * * * * *
31635894 -CCCTACTTGTACTCCGGTACACTTGATTTCACATACGTA
1 CCCCTATTTGTATTTCGGTACCCCTGATTACACATACGTA
31635933 CCCCT
1 CCCCT
31635938 GTTTATACTT
Statistics
Matches: 125, Mismatches: 37, Indels: 10
0.73 0.22 0.06
Matches are distributed among these distances:
39 1 0.01
40 97 0.78
41 2 0.02
42 25 0.20
ACGTcount: A:0.21, C:0.29, G:0.14, T:0.36
Consensus pattern (40 bp):
CCCCTATTTGTATTTCGGTACCCCTGATTACACATACGTA
Found at i:31645088 original size:26 final size:26
Alignment explanation
Indices: 31645059--31645114 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
31645049 TTACCTACGC
31645059 TAAAATTTTGACGATTTTACCCTTAG
1 TAAAATTTTGACGATTTTACCCTTAG
* *
31645085 TAAAATTTTGACGATTTTGCCCTTGG
1 TAAAATTTTGACGATTTTACCCTTAG
31645111 TAAA
1 TAAA
31645115 TTTCAAGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.41
Consensus pattern (26 bp):
TAAAATTTTGACGATTTTACCCTTAG
Found at i:31661844 original size:93 final size:93
Alignment explanation
Indices: 31661724--31661923 Score: 253
Period size: 93 Copynumber: 2.2 Consensus size: 93
31661714 TATGTTAAAA
* * * * *
31661724 GGTATATTGGTTTTGTTTGGAGGGTATACTTGGTTGTGTAC-GAAAGTTATTTATATGG-TGTTG
1 GGTAAATTGGTTGTATTTGGAGCGTATACTTGGTTGTGTACAG-AAGTTATATATATGGTTG-TG
*
31661787 TTTTGCA-GGTACATTTTGTTATGTTCGGAG
64 -TTTGAAGGGTACATTTTGTTATGTTCGGAG
* *
31661817 GGTAAATTGGTTGTATTTGGAGCGTATACTTGGTTGTGTTCAGAGGTTATATATATGGTTGTGTT
1 GGTAAATTGGTTGTATTTGGAGCGTATACTTGGTTGTGTACAGAAGTTATATATATGGTTGTGTT
* **
31661882 TGAAGGGTACATTTTGTTGTGTTTTGAG
66 TGAAGGGTACATTTTGTTATGTTCGGAG
31661910 GGTAAATTGGTTGT
1 GGTAAATTGGTTGT
31661924 GTTTTACGGG
Statistics
Matches: 93, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
92 5 0.05
93 85 0.91
94 3 0.03
ACGTcount: A:0.19, C:0.04, G:0.31, T:0.46
Consensus pattern (93 bp):
GGTAAATTGGTTGTATTTGGAGCGTATACTTGGTTGTGTACAGAAGTTATATATATGGTTGTGTT
TGAAGGGTACATTTTGTTATGTTCGGAG
Found at i:31661901 original size:48 final size:46
Alignment explanation
Indices: 31661726--31661927 Score: 128
Period size: 48 Copynumber: 4.3 Consensus size: 46
31661716 TGTTAAAAGG
* * * *
31661726 TATATTGGTTTTGTTTGGAGGGTATACTTGGTTGTGTACGAAAGTTA
1 TATATTGGTTGTGTTTGGAGGGTACACTTGGTTGTGTTCG-AGGTTA
* * * * * *
31661773 TTTATATGG-TGTTGTTTTGCA-GGTACATTTTGTTATGTTCGGAGGGTA
1 TATAT-TGGTTG-TG-TTTGGAGGGTACACTTGGTTGTGTTC-GAGGTTA
* * *
31661821 -A-ATTGGTTGTATTTGGAGCGTATACTTGGTTGTGTTCAGAGGTTA
1 TATATTGGTTGTGTTTGGAGGGTACACTTGGTTGTGTTC-GAGGTTA
* * * * *
31661866 TATATATGGTTGTGTTTGAAGGGTACATTTTGTTGTGTTTTGAGGGTA
1 TATAT-TGGTTGTGTTTGGAGGGTACACTTGGTTGTG-TTCGAGGTTA
31661914 -A-ATTGGTTGTGTTT
1 TATATTGGTTGTGTTT
31661928 TACGGGTGAT
Statistics
Matches: 117, Mismatches: 28, Indels: 22
0.70 0.17 0.13
Matches are distributed among these distances:
44 5 0.04
45 35 0.30
46 7 0.06
47 8 0.07
48 54 0.46
49 8 0.07
ACGTcount: A:0.19, C:0.04, G:0.30, T:0.47
Consensus pattern (46 bp):
TATATTGGTTGTGTTTGGAGGGTACACTTGGTTGTGTTCGAGGTTA
Found at i:31661904 original size:23 final size:21
Alignment explanation
Indices: 31661814--31661927 Score: 84
Period size: 23 Copynumber: 5.0 Consensus size: 21
31661804 GTTATGTTCG
*
31661814 GAGGGTAAATTGGTTGTATTT
1 GAGGGTAAATTGGTTGTGTTT
* * *
31661835 GGAGCGTATACTTGGTTGTGTTCA
1 -GAGGGTA-AATTGGTTGTGTT-T
*
31661859 GAGGTTATATATATGGTTGTGTTT
1 GAGGGTA-A-AT-TGGTTGTGTTT
* *
31661883 GAAGGGTACATTTTGTTGTGTTTT
1 G-AGGGTA-AATTGGTTGTG-TTT
31661907 GAGGGTAAATTGGTTGTGTTT
1 GAGGGTAAATTGGTTGTGTTT
31661928 TACGGGTGAT
Statistics
Matches: 72, Mismatches: 14, Indels: 13
0.73 0.14 0.13
Matches are distributed among these distances:
21 3 0.04
22 15 0.21
23 31 0.43
24 7 0.10
25 16 0.22
ACGTcount: A:0.19, C:0.04, G:0.32, T:0.45
Consensus pattern (21 bp):
GAGGGTAAATTGGTTGTGTTT
Found at i:31661934 original size:22 final size:22
Alignment explanation
Indices: 31661872--31661934 Score: 65
Period size: 22 Copynumber: 2.8 Consensus size: 22
31661862 GTTATATATA
* *
31661872 TGGTTGTGTTTGAAGGGTACATT
1 TGGTTGTGTTT-TAGGGTACAAT
*
31661895 TTGTTGTGTTTTGAGGGTA-AAT
1 TGGTTGTGTTTT-AGGGTACAAT
31661917 TGGTTGTGTTTTACGGGT
1 TGGTTGTGTTTTA-GGGT
31661935 GATAGCTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
21 1 0.03
22 17 0.50
23 16 0.47
ACGTcount: A:0.14, C:0.03, G:0.35, T:0.48
Consensus pattern (22 bp):
TGGTTGTGTTTTAGGGTACAAT
Found at i:31664224 original size:47 final size:47
Alignment explanation
Indices: 31664161--31664600 Score: 593
Period size: 47 Copynumber: 9.3 Consensus size: 47
31664151 CCCTTCGGGA
* * *
31664161 CTTATCACATTTATACACT-TCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
31664208 CTTATCACATATATACA--CTCACATTCATCACATTGGCCATTTGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
31664253 CTTATCTCATATATGCATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
31664300 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
31664347 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
31664394 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* *
31664441 CTTATCTCGCATATATATACT-TTCACATTCATCACATTGGCCATTCGGC
1 CTTA--TCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
* *
31664490 CTTATCACACATACACATGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
* * *
31664537 CTTATCTCGCATATATATACT-TTCACATTCATCACATTGGCCACTCGGC
1 CTTA--TCACATATATACA-TGTTCACATTCATCACATTGGCCATTCGGC
*
31664586 CCTATCACATATATA
1 CTTATCACATATATA
31664601 TACTTGTACA
Statistics
Matches: 356, Mismatches: 28, Indels: 18
0.89 0.07 0.04
Matches are distributed among these distances:
45 39 0.11
46 1 0.00
47 234 0.66
49 80 0.22
50 2 0.01
ACGTcount: A:0.27, C:0.31, G:0.10, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGC
Found at i:31664530 original size:96 final size:96
Alignment explanation
Indices: 31664172--31664594 Score: 644
Period size: 96 Copynumber: 4.5 Consensus size: 96
31664162 TTATCACATT
* * * * * *
31664172 TATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACA--CTCACATTCA
1 TATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCA
*
31664235 TCACATTGGCCATTTGGCCTTATCT--CATA
66 TCACATTGGCCATTCGGCCTTATCTCGCATA
**
31664264 TATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTC
1 TATATACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTC
* *
31664328 ATCACATTGGCCATTCGGCCTTATCACACATA
65 ATCACATTGGCCATTCGGCCTTATCTCGCATA
* * *
31664360 CACAT--GTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCA
1 TATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCA
31664423 TCACATTGGCCATTCGGCCTTATCTCGCATA
66 TCACATTGGCCATTCGGCCTTATCTCGCATA
31664454 TATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCA
1 TATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCA
31664519 TCACATTGGCCATTCGGCCTTATCTCGCATA
66 TCACATTGGCCATTCGGCCTTATCTCGCATA
* *
31664550 TATATACTTTCACATTCATCACATTGGCCACTCGGCCCTATCACA
1 TATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACA
31664595 TATATATACT
Statistics
Matches: 304, Mismatches: 20, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
91 1 0.00
92 46 0.15
94 121 0.40
96 136 0.45
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.32
Consensus pattern (96 bp):
TATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTTCACATTCA
TCACATTGGCCATTCGGCCTTATCTCGCATA
Found at i:31675020 original size:38 final size:38
Alignment explanation
Indices: 31674963--31675047 Score: 100
Period size: 38 Copynumber: 2.2 Consensus size: 38
31674953 GTGTTTTTCT
* * *
31674963 TTCTGTTTGGCATGATTGGGTGGATCAGCTCTTACGAGC
1 TTCTG-TTGGCATGATTGGGAGGACCAACTCTTACGAGC
*
31675002 TTCTGTTGGCAT-ATTTGGGAGGACCAACTCTTATGAGC
1 TTCTGTTGGCATGA-TTGGGAGGACCAACTCTTACGAGC
*
31675040 TTTTGTTG
1 TTCTGTTG
31675048 ACGATGTACT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
37 1 0.03
38 34 0.85
39 5 0.12
ACGTcount: A:0.16, C:0.16, G:0.28, T:0.39
Consensus pattern (38 bp):
TTCTGTTGGCATGATTGGGAGGACCAACTCTTACGAGC
Found at i:31689366 original size:14 final size:15
Alignment explanation
Indices: 31689327--31689367 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
31689317 AACTGGTCAT
*
31689327 AGAGAGA-ATTGAGT
1 AGAGAGATATTGAGG
31689341 AGAGAGAT-TTGAGG
1 AGAGAGATATTGAGG
31689355 AGAGA-ATATTGAG
1 AGAGAGATATTGAG
31689368 ATTTGGGGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 2 0.08
14 22 0.92
ACGTcount: A:0.41, C:0.00, G:0.37, T:0.22
Consensus pattern (15 bp):
AGAGAGATATTGAGG
Found at i:31690493 original size:27 final size:27
Alignment explanation
Indices: 31690451--31690595 Score: 175
Period size: 27 Copynumber: 5.4 Consensus size: 27
31690441 CCCCAAAATA
* *
31690451 GGTAAAATTATTGAAATACCCTCATAG
1 GGTAAAATAATCGAAATACCCTCATAG
**
31690478 AATAAAATAATCGAAATACCCTCATAG
1 GGTAAAATAATCGAAATACCCTCATAG
*
31690505 GGTAAAATAATCGAAATACCCCCATAG
1 GGTAAAATAATCGAAATACCCTCATAG
* * * *
31690532 GGTAAAATGACCAAAATACCGTCATAG
1 GGTAAAATAATCGAAATACCCTCATAG
* *
31690559 GGTAAAATGATTGAAATACCC-CTATAG
1 GGTAAAATAATCGAAATACCCTC-ATAG
31690586 GGTAAAATAA
1 GGTAAAATAA
31690596 CTGTTGTACC
Statistics
Matches: 100, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 99 0.99
ACGTcount: A:0.46, C:0.17, G:0.15, T:0.23
Consensus pattern (27 bp):
GGTAAAATAATCGAAATACCCTCATAG
Found at i:31690694 original size:30 final size:25
Alignment explanation
Indices: 31690635--31690700 Score: 123
Period size: 25 Copynumber: 2.6 Consensus size: 25
31690625 GTTATGGTCT
31690635 TATGTTATGTATGACTGATTTACTC
1 TATGTTATGTATGACTGATTTACTC
31690660 TATGTTATGTATGACTGATTTACTC
1 TATGTTATGTATGACTGATTTACTC
*
31690685 TATGATATGTATGACT
1 TATGTTATGTATGACT
31690701 ATGATTGAGC
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.26, C:0.11, G:0.17, T:0.47
Consensus pattern (25 bp):
TATGTTATGTATGACTGATTTACTC
Found at i:31698285 original size:15 final size:15
Alignment explanation
Indices: 31698265--31698294 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
31698255 ACTTGGTTCG
31698265 ATTTCAGCTTTCGCA
1 ATTTCAGCTTTCGCA
31698280 ATTTCAGCTTTCGCA
1 ATTTCAGCTTTCGCA
31698295 GTTAACTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.27, G:0.13, T:0.40
Consensus pattern (15 bp):
ATTTCAGCTTTCGCA
Found at i:31706623 original size:20 final size:20
Alignment explanation
Indices: 31706554--31706643 Score: 74
Period size: 20 Copynumber: 4.2 Consensus size: 20
31706544 ATACATGTTA
*
31706554 TGTTCTGTTCTGCTCCATTC
1 TGTTCTGTTCTGCTCTATTC
31706574 TGTTCTGTTCTGCTCTAATCTAC
1 TGTTCTGTTCTGCTCT-AT-T-C
* *
31706597 TCCGTTCTGTTATGTTCTATTC
1 T--GTTCTGTTCTGCTCTATTC
* *
31706619 TGTTCAGTAT-TGCTCTACTC
1 TGTTCTGT-TCTGCTCTATTC
31706639 TGTTC
1 TGTTC
31706644 CATCTTGTTC
Statistics
Matches: 58, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
20 34 0.59
21 3 0.05
22 3 0.05
23 3 0.05
24 2 0.03
25 13 0.22
ACGTcount: A:0.10, C:0.26, G:0.14, T:0.50
Consensus pattern (20 bp):
TGTTCTGTTCTGCTCTATTC
Found at i:31714587 original size:27 final size:27
Alignment explanation
Indices: 31714557--31714717 Score: 196
Period size: 27 Copynumber: 6.0 Consensus size: 27
31714547 TTATCTCCTA
**
31714557 GGGGTATAACAATCATTTTACCCTATG
1 GGGGTATTTCAATCATTTTACCCTATG
*
31714584 GGGGTATTTCAACCATTTTACCCTATG
1 GGGGTATTTCAATCATTTTACCCTATG
* * *
31714611 GGGGTATTTCAGTCATTTTATCTTATG
1 GGGGTATTTCAATCATTTTACCCTATG
* * * **
31714638 AGGTTATTTCGATCATTTTACCCTACA
1 GGGGTATTTCAATCATTTTACCCTATG
*
31714665 GGGGTATTTCAATCATTTTACCTTATG
1 GGGGTATTTCAATCATTTTACCCTATG
* *
31714692 AGGGTATTTCAGTCATTTTACCCTAT
1 GGGGTATTTCAATCATTTTACCCTAT
31714718 AAGGTTCTCG
Statistics
Matches: 110, Mismatches: 24, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 110 1.00
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.41
Consensus pattern (27 bp):
GGGGTATTTCAATCATTTTACCCTATG
Found at i:31714616 original size:54 final size:54
Alignment explanation
Indices: 31714555--31714718 Score: 220
Period size: 54 Copynumber: 3.0 Consensus size: 54
31714545 TTTTATCTCC
** * * *
31714555 TAGGGGTATAACAATCATTTTACCCTATGGGGGTATTTCAACCATTTTACCCTA
1 TAGGGGTATTTCAATCATTTTACCTTATGAGGGTATTTCAATCATTTTACCCTA
* * * * *
31714609 TGGGGGTATTTCAGTCATTTTATCTTATGAGGTTATTTCGATCATTTTACCCTA
1 TAGGGGTATTTCAATCATTTTACCTTATGAGGGTATTTCAATCATTTTACCCTA
* *
31714663 CAGGGGTATTTCAATCATTTTACCTTATGAGGGTATTTCAGTCATTTTACCCTA
1 TAGGGGTATTTCAATCATTTTACCTTATGAGGGTATTTCAATCATTTTACCCTA
31714717 TA
1 TA
31714719 AGGTTCTCGA
Statistics
Matches: 92, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 92 1.00
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.41
Consensus pattern (54 bp):
TAGGGGTATTTCAATCATTTTACCTTATGAGGGTATTTCAATCATTTTACCCTA
Found at i:31714723 original size:81 final size:81
Alignment explanation
Indices: 31714568--31714723 Score: 240
Period size: 81 Copynumber: 1.9 Consensus size: 81
31714558 GGGTATAACA
** * *
31714568 ATCATTTTACCCTATGGGGGTATTTCAACCATTTTACCCTATGGGGGTATTTCAGTCATTTTATC
1 ATCATTTTACCCTACAGGGGTATTTCAACCATTTTACCCTATGAGGGTATTTCAGTCATTTTACC
* *
31714633 TTATGAGGTTATTTCG
66 CTATAAGGTTATTTCG
* *
31714649 ATCATTTTACCCTACAGGGGTATTTCAATCATTTTACCTTATGAGGGTATTTCAGTCATTTTACC
1 ATCATTTTACCCTACAGGGGTATTTCAACCATTTTACCCTATGAGGGTATTTCAGTCATTTTACC
31714714 CTATAAGGTT
66 CTATAAGGTT
31714724 CTCGATGCAG
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 67 1.00
ACGTcount: A:0.23, C:0.18, G:0.17, T:0.42
Consensus pattern (81 bp):
ATCATTTTACCCTACAGGGGTATTTCAACCATTTTACCCTATGAGGGTATTTCAGTCATTTTACC
CTATAAGGTTATTTCG
Found at i:31716662 original size:22 final size:22
Alignment explanation
Indices: 31716637--31716711 Score: 71
Period size: 22 Copynumber: 3.4 Consensus size: 22
31716627 ATCACCCATA
*
31716637 AAACATAAAAAATTTACCCTCG
1 AAACACAAAAAATTTACCCTCG
**
31716659 AAACACAACCAATTTACCCTCCG
1 AAACACAAAAAATTTACCCT-CG
* * *
31716682 -AACACAAGCAAATGTACCCTCC
1 AAACACAA-AAAATTTACCCTCG
31716704 AAACACAA
1 AAACACAA
31716712 CCATATATAT
Statistics
Matches: 44, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
22 25 0.57
23 19 0.43
ACGTcount: A:0.47, C:0.32, G:0.05, T:0.16
Consensus pattern (22 bp):
AAACACAAAAAATTTACCCTCG
Found at i:31716699 original size:23 final size:22
Alignment explanation
Indices: 31716646--31716792 Score: 93
Period size: 23 Copynumber: 6.4 Consensus size: 22
31716636 AAAACATAAA
*
31716646 AAATTTACCCT-CGAAACACAAC
1 AAATGTACCCTCCG-AACACAAC
* *
31716668 CAATTTACCCTCCGAACACAAGC
1 AAATGTACCCTCCGAACACAA-C
*
31716691 AAATGTACCCTCCAAACACAACC
1 AAATGTACCCTCCGAACACAA-C
* * *
31716714 ATATATATAACCTCTGAACACAAC
1 A-A-ATGTACCCTCCGAACACAAC
*
31716738 AAA-GTATTCCCTCCAAACACAAC
1 AAATGTA--CCCTCCGAACACAAC
* * *
31716761 CAATTTACCC-CTCGAACATAACC
1 AAATGTACCCTC-CGAACACAA-C
31716784 AAATGTACC
1 AAATGTACC
31716793 TGCAAAACAC
Statistics
Matches: 97, Mismatches: 19, Indels: 17
0.73 0.14 0.13
Matches are distributed among these distances:
21 3 0.03
22 28 0.29
23 46 0.47
24 5 0.05
25 15 0.15
ACGTcount: A:0.41, C:0.34, G:0.05, T:0.19
Consensus pattern (22 bp):
AAATGTACCCTCCGAACACAAC
Found at i:31716750 original size:48 final size:47
Alignment explanation
Indices: 31716646--31716860 Score: 194
Period size: 48 Copynumber: 4.6 Consensus size: 47
31716636 AAAACATAAA
* * * *
31716646 AAATTTACCCTCGAAACACAACCAAT-T-TACCCTCCGAACACAAGC
1 AAATGTACCCTCCAAACACAACCAATATATAACCTCCGAACACAACC
*
31716691 AAATGTACCCTCCAAACACAACCATATATATAACCTCTGAACACAA-C
1 AAATGTACCCTCCAAACACAACCA-ATATATAACCTCCGAACACAACC
* *
31716738 AAA-GTATTCCCTCCAAACACAACCAAT-T-T-ACCCCTCGAACATAACC
1 AAATGTA--CCCTCCAAACACAACCAATATATAACCTC-CGAACACAACC
* * * * *
31716784 AAATGTA-CCTGCAAAACACTACCATACATATAACCTCCGAACATAATC
1 AAATGTACCCT-CCAAACACAACCA-ATATATAACCTCCGAACACAACC
* *
31716832 AAGTATACCCTCCAAACACAACCAATATA
1 AAATGTACCCTCCAAACACAACCAATATA
31716861 CCCTTTAACA
Statistics
Matches: 139, Mismatches: 17, Indels: 26
0.76 0.09 0.14
Matches are distributed among these distances:
44 7 0.05
45 41 0.29
46 11 0.08
47 15 0.11
48 58 0.42
49 7 0.05
ACGTcount: A:0.43, C:0.33, G:0.05, T:0.19
Consensus pattern (47 bp):
AAATGTACCCTCCAAACACAACCAATATATAACCTCCGAACACAACC
Found at i:31716815 original size:93 final size:94
Alignment explanation
Indices: 31716651--31716863 Score: 290
Period size: 93 Copynumber: 2.3 Consensus size: 94
31716641 ATAAAAAATT
* * *
31716651 TACCCTCGAAACACAACCAATTTA-CCCTCCGAACACAAGCAAATGTACCCTCCAAACACAACCA
1 TACCCTCCAAACACAACCAATTTACCCCTCCGAACACAACCAAATGTACCCTCAAAACACAACCA
* *
31716715 TATATATAACCTCTGAACACAA-CAAAGTA
66 TACATATAACCTCCGAACACAATC-AAGTA
* * *
31716744 TTCCCTCCAAACACAACCAATTTACCCCT-CGAACATAACCAAATGTA-CCTGCAAAACACTACC
1 TACCCTCCAAACACAACCAATTTACCCCTCCGAACACAACCAAATGTACCCT-CAAAACACAACC
*
31716807 ATACATATAACCTCCGAACATAATCAAGTA
65 ATACATATAACCTCCGAACACAATCAAGTA
*
31716837 TACCCTCCAAACACAACCAATATACCC
1 TACCCTCCAAACACAACCAATTTACCC
31716864 TTTAACATAT
Statistics
Matches: 106, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
92 3 0.03
93 98 0.92
94 5 0.05
ACGTcount: A:0.42, C:0.35, G:0.05, T:0.18
Consensus pattern (94 bp):
TACCCTCCAAACACAACCAATTTACCCCTCCGAACACAACCAAATGTACCCTCAAAACACAACCA
TACATATAACCTCCGAACACAATCAAGTA
Found at i:31727215 original size:43 final size:43
Alignment explanation
Indices: 31727145--31727321 Score: 203
Period size: 43 Copynumber: 4.1 Consensus size: 43
31727135 TAAAATTCAA
* *
31727145 GTTCTTTAGTGGCGTTTATGGGGAAAGCGCCGCTAAAGGTCAT
1 GTTCTTTAGTGGCGTTTATGGGAAAAGCACCGCTAAAGGTCAT
* * * *
31727188 GTTCTTTAGTGGCATTTGTGGGAAAAGCATCGCTACAGGTCAT
1 GTTCTTTAGTGGCGTTTATGGGAAAAGCACCGCTAAAGGTCAT
* * * * * *
31727231 GTTCTATAGCT-TCGTTTGTGGGGAAACCACCACTAAAGGTCAT
1 GTTCTTTAG-TGGCGTTTATGGGAAAAGCACCGCTAAAGGTCAT
** *
31727274 GTTCTTTAACGGCGTTTATGGGAAAAGCACCGCTAAAGGTTAT
1 GTTCTTTAGTGGCGTTTATGGGAAAAGCACCGCTAAAGGTCAT
31727317 GTTCT
1 GTTCT
31727322 ACAGCGACAT
Statistics
Matches: 109, Mismatches: 23, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
43 108 0.99
44 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.32
Consensus pattern (43 bp):
GTTCTTTAGTGGCGTTTATGGGAAAAGCACCGCTAAAGGTCAT
Found at i:31727296 original size:86 final size:86
Alignment explanation
Indices: 31727157--31727322 Score: 233
Period size: 86 Copynumber: 1.9 Consensus size: 86
31727147 TCTTTAGTGG
* * * ** * *
31727157 CGTTTATGGGGAAAGCGCCGCTAAAGGTCATGTTCTTTAGTGGCATTTGTGGGAAAAGCATCGCT
1 CGTTTATGGGGAAACCACCACTAAAGGTCATGTTCTTTAACGGCATTTATGGGAAAAGCACCGCT
*
31727222 ACAGGTCATGTTCTATAGCTT
66 AAAGGTCATGTTCTATAGCTT
* *
31727243 CGTTTGTGGGGAAACCACCACTAAAGGTCATGTTCTTTAACGGCGTTTATGGGAAAAGCACCGCT
1 CGTTTATGGGGAAACCACCACTAAAGGTCATGTTCTTTAACGGCATTTATGGGAAAAGCACCGCT
*
31727308 AAAGGTTATGTTCTA
66 AAAGGTCATGTTCTA
31727323 CAGCGACATT
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
86 69 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (86 bp):
CGTTTATGGGGAAACCACCACTAAAGGTCATGTTCTTTAACGGCATTTATGGGAAAAGCACCGCT
AAAGGTCATGTTCTATAGCTT
Found at i:31728243 original size:23 final size:23
Alignment explanation
Indices: 31728212--31728257 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
31728202 ATATAAGAGG
*
31728212 TAATTCCATCAAAATTAGCAACT
1 TAATACCATCAAAATTAGCAACT
* *
31728235 TAATACCATCAACATTCGCAACT
1 TAATACCATCAAAATTAGCAACT
31728258 ACATATTCAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.41, C:0.26, G:0.04, T:0.28
Consensus pattern (23 bp):
TAATACCATCAAAATTAGCAACT
Found at i:31738323 original size:18 final size:18
Alignment explanation
Indices: 31738289--31738323 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
31738279 AGGATTGCAA
* *
31738289 GTTTCCATTTTCGTTTTC
1 GTTTCCATTTCCATTTTC
31738307 GTTTCCATTTCCATTTT
1 GTTTCCATTTCCATTTT
31738324 TGGAAACCTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.09, C:0.23, G:0.09, T:0.60
Consensus pattern (18 bp):
GTTTCCATTTCCATTTTC
Found at i:31743331 original size:20 final size:19
Alignment explanation
Indices: 31743294--31743352 Score: 61
Period size: 18 Copynumber: 3.2 Consensus size: 19
31743284 CTAACTTCAC
*
31743294 AAGTCAAAAAAT-TATAAA
1 AAGTCTAAAAATATATAAA
31743312 AAGTCTAAAGAATATATAAA
1 AAGTCTAAA-AATATATAAA
*
31743332 GAA-TTTAAAAA-ATATAAA
1 -AAGTCTAAAAATATATAAA
31743350 AAG
1 AAG
31743353 ACCCTAAACT
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
17 2 0.06
18 15 0.43
19 5 0.14
20 11 0.31
21 2 0.06
ACGTcount: A:0.64, C:0.03, G:0.08, T:0.24
Consensus pattern (19 bp):
AAGTCTAAAAATATATAAA
Found at i:31743353 original size:20 final size:19
Alignment explanation
Indices: 31743299--31743353 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 19
31743289 TTCACAAGTC
31743299 AAAAAATTATAAAAAG-TCT
1 AAAAAA-TATAAAAAGATCT
* * *
31743318 AAAGAATATATAAAGAATTT
1 AAAAAATATAAAAAG-ATCT
31743338 AAAAAATATAAAAAGA
1 AAAAAATATAAAAAGA
31743354 CCCTAAACTC
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
18 8 0.28
19 6 0.21
20 15 0.52
ACGTcount: A:0.67, C:0.02, G:0.07, T:0.24
Consensus pattern (19 bp):
AAAAAATATAAAAAGATCT
Found at i:31743584 original size:17 final size:16
Alignment explanation
Indices: 31743562--31743593 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
31743552 ACTTTACTCT
31743562 ATAATTTAAATATAATC
1 ATAATTTAAAT-TAATC
31743579 ATAATTTAAATTAAT
1 ATAATTTAAATTAAT
31743594 AAAACTTACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (16 bp):
ATAATTTAAATTAATC
Found at i:31743835 original size:27 final size:27
Alignment explanation
Indices: 31743805--31743857 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
31743795 GTTTAAAATT
31743805 AATCAAAATAAA-ACATAAAAATATGTA
1 AATCAAAATAAATA-ATAAAAATATGTA
*
31743832 AATCAAAATAAATAATAAAAGTATGT
1 AATCAAAATAAATAATAAAAATATGT
31743858 CTACTCAGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 23 0.96
28 1 0.04
ACGTcount: A:0.64, C:0.06, G:0.06, T:0.25
Consensus pattern (27 bp):
AATCAAAATAAATAATAAAAATATGTA
Found at i:31752432 original size:18 final size:18
Alignment explanation
Indices: 31752411--31752455 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
31752401 CATTCTTCTC
* *
31752411 CCCTTTCCCCTTCTCCTT
1 CCCTTTCCCCTACCCCTT
31752429 CCCTTTCCCCTACCCCTT
1 CCCTTTCCCCTACCCCTT
31752447 CCCTTTCCC
1 CCCTTTCCC
31752456 GTTTCGAAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.02, C:0.60, G:0.00, T:0.38
Consensus pattern (18 bp):
CCCTTTCCCCTACCCCTT
Found at i:31759306 original size:28 final size:27
Alignment explanation
Indices: 31759246--31759308 Score: 81
Period size: 28 Copynumber: 2.3 Consensus size: 27
31759236 TGAAAAGGTG
31759246 AAATTTAATTTTTATATTATAATTTCA
1 AAATTTAATTTTTATATTATAATTTCA
* * *
31759273 AGAATTTAATTTTTATTTTTTAGATTTTA
1 A-AATTTAATTTTTATATTATA-ATTTCA
31759302 AAATTTA
1 AAATTTA
31759309 GATATGTTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 1 0.03
28 24 0.77
29 6 0.19
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (27 bp):
AAATTTAATTTTTATATTATAATTTCA
Found at i:31759981 original size:114 final size:113
Alignment explanation
Indices: 31759741--31759983 Score: 369
Period size: 114 Copynumber: 2.1 Consensus size: 113
31759731 AAAATAAGCA
* ** *
31759741 TTAGCGACGTTTTCCAAAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCATT
1 TTAGCGGCGTTTTTGAAAAAGCACCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCATT
*
31759806 CAGGGATTTAGCGGCATTTTTGAGGAAGCGCCGCTAATGCTCAGGGCT
66 CAGGGATTTAGCGGCATTTTTGAGGAAGCGCCGCTAATGCTCAAGGCT
** *
31759854 TTAATGGCATTTTTGAAAAAGCACCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCAT
1 TTAGCGGCGTTTTTGAAAAAGCACCGC-AAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCAT
* * * *
31759919 TCGGGGATTTAGCGGCGTTTTTTAGGAAGCGCCGCTAATGCTCAAGGTT
65 TCAGGGATTTAGCGGCATTTTTGAGGAAGCGCCGCTAATGCTCAAGGCT
31759968 TTAGCGGCGTTTTTGA
1 TTAGCGGCGTTTTTGA
31759984 GGAAGCGACG
Statistics
Matches: 114, Mismatches: 15, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
113 20 0.18
114 94 0.82
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (113 bp):
TTAGCGGCGTTTTTGAAAAAGCACCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCATT
CAGGGATTTAGCGGCATTTTTGAGGAAGCGCCGCTAATGCTCAAGGCT
Found at i:31759987 original size:41 final size:41
Alignment explanation
Indices: 31759923--31760035 Score: 154
Period size: 41 Copynumber: 2.8 Consensus size: 41
31759913 GAGCATTCGG
*
31759923 GGATTTAGCGGCGTTTTTTAGGAAGCGCCGCTAATGCTCAA
1 GGATTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCAA
* * * *
31759964 GGTTTTAGCGGCGTTTTTGAGGAAGCGACGCTAATGCTTAG
1 GGATTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCAA
* * *
31760005 GGATTTAGTGGCGTTTTTGAGAAAGCACCGC
1 GGATTTAGCGGCGTTTTTGAGGAAGCGCCGC
31760036 AAAAAAACCT
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.30
Consensus pattern (41 bp):
GGATTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCAA
Found at i:31760035 original size:155 final size:155
Alignment explanation
Indices: 31759812--31760145 Score: 533
Period size: 155 Copynumber: 2.2 Consensus size: 155
31759802 CATTCAGGGA
* * *
31759812 TTTAGCGGCATTTTTGAGGAAGCGCCGCTAATGCTCAGGGCTTTAATGGCATTTTTGAAAAAGCA
1 TTTAGCGGCGTTTTTGAGGAAGCGACGCTAATGCTCAGGGATTTAATGGCATTTTTGAAAAAGCA
* *
31759877 CCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCATTCGGGGATTTAGCGGCGTTTTTT
66 CCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCATTCGGGGATTTAGCGGCGTTTTTG
*
31759942 AGGAAGCGCCGCTAATGCTCAAGGT
131 AGGAAGCGCCGCTAATGCTCAAGGC
* * * *
31759967 TTTAGCGGCGTTTTTGAGGAAGCGACGCTAATGCTTAGGGATTTAGTGGCGTTTTTGAGAAAGCA
1 TTTAGCGGCGTTTTTGAGGAAGCGACGCTAATGCTCAGGGATTTAATGGCATTTTTGAAAAAGCA
*
31760032 CCGCAAAAAAACCTAAGCCCAATGACGCCATTTTCTGAGCATTCGGGGATTTAGCGGCGTTTTTG
66 CCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCATTCGGGGATTTAGCGGCGTTTTTG
**
31760097 AGGAAGCGCCGCTAATGCTCTGGGC
131 AGGAAGCGCCGCTAATGCTCAAGGC
* *
31760122 TTTAGCAGCGTTTTTGAGAAAGCG
1 TTTAGCGGCGTTTTTGAGGAAGCG
31760146 CCGCCAAAAA
Statistics
Matches: 164, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
155 164 1.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (155 bp):
TTTAGCGGCGTTTTTGAGGAAGCGACGCTAATGCTCAGGGATTTAATGGCATTTTTGAAAAAGCA
CCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCATTCGGGGATTTAGCGGCGTTTTTG
AGGAAGCGCCGCTAATGCTCAAGGC
Found at i:31760180 original size:114 final size:114
Alignment explanation
Indices: 31759967--31760326 Score: 515
Period size: 114 Copynumber: 3.1 Consensus size: 114
31759957 TGCTCAAGGT
* * *
31759967 TTTAGCGGCGTTTTTGAGGAAGCGACGCTAATGCT-TAGGGATTTAGTGGCGTTTTTGAGAAAGC
1 TTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCT-GGGCTTTAGCGGCGTTTTTGAGAAAGC
* * * *
31760031 ACCGCAAAAAAACCTAAGCCCAATGACGCCATTTTCTGAGCATTCGGGGA
65 GCCGCAAAAAAACCTAAGCCCAACGACGTCGTTTTCTGAGCATTCGGGGA
*
31760081 TTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCTGGGCTTTAGCAGCGTTTTTGAGAAAGCG
1 TTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCTGGGCTTTAGCGGCGTTTTTGAGAAAGCG
* * *
31760146 CCGCCAAAAAACCTATGTCCAACGACGTCGTTTTCTGAGCATTCGGGGA
66 CCGCAAAAAAACCTAAGCCCAACGACGTCGTTTTCTGAGCATTCGGGGA
* * ** *
31760195 TTTAGCGGCGTTTTTCAAGAAGCGCCGCTAATGCTCAAGGCTTTAGCGGTGTTTTTGAGAAAGCG
1 TTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCTGGGCTTTAGCGGCGTTTTTGAGAAAGCG
* *
31760260 CCGCAAAAAAACCTAAGCCCAACGACGTTGTTTTCTGAGCTTTTCGGGGA
66 CCGCAAAAAAACCTAAGCCCAACGACGTCGTTTTCTGAGC-ATTCGGGGA
* *
31760310 TTTTGCAGCGTTTTTGA
1 TTTAGCGGCGTTTTTGA
31760327 CAAAGTGCCG
Statistics
Matches: 219, Mismatches: 25, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
114 196 0.89
115 23 0.11
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (114 bp):
TTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCTGGGCTTTAGCGGCGTTTTTGAGAAAGCG
CCGCAAAAAAACCTAAGCCCAACGACGTCGTTTTCTGAGCATTCGGGGA
Found at i:31760251 original size:269 final size:268
Alignment explanation
Indices: 31759758--31760259 Score: 806
Period size: 269 Copynumber: 1.9 Consensus size: 268
31759748 CGTTTTCCAA
* *
31759758 AAAGCGCCGCAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCATTCAGGGATTTAGCGGCAT
1 AAAGCACCGCAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCATTCAGGGATTTAGCGGCAT
**
31759823 TTTTGAGGAAGCGCCGCTAATGCTCAGGGCTTTAATGGCATTTTTGAAAAAGCACCGCAAAAAAA
66 TTTTGAGGAAGCGCCGCTAATGCTCAGGGCTTTAACAGCATTTTTGAAAAAGCACCGCAAAAAAA
* *
31759888 CCTAAGCCCAACGACGCCGTTTTCTGAGCATTCGGGGATTTAGCGGCGTTTTTTAGGAAGCGCCG
131 CCTAAGCCCAACGACGCCGTTTTCTGAGCATTCGGGGATTTAGCGGCGTTTTTCAAGAAGCGCCG
* *
31759953 CTAATGCTCAAGGTTTTAGCGGCGTTTTTGAGGAAGCGACGCTAATGCTTAGGGATTTAGTGGCG
196 CTAATGCTCAAGGCTTTAGCGGCGTTTTTGAGAAAGCGACGCTAATGCTTAGGGATTTAGTGGCG
31760018 TTTTTGAG
261 TTTTTGAG
* * *
31760026 AAAGCACCGCAAAAAAACCTAAGCCCAATGACGCCATTTTCTGAGCATTCGGGGATTTAGCGGCG
1 AAAGCACCGC-AAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCATTCAGGGATTTAGCGGCA
* * * * * *
31760091 TTTTTGAGGAAGCGCCGCTAATGCTCTGGGCTTTAGCAGCGTTTTTGAGAAAGCGCCGCCAAAAA
65 TTTTTGAGGAAGCGCCGCTAATGCTCAGGGCTTTAACAGCATTTTTGAAAAAGCACCGCAAAAAA
* * *
31760156 ACCTATGTCCAACGACGTCGTTTTCTGAGCATTCGGGGATTTAGCGGCGTTTTTCAAGAAGCGCC
130 ACCTAAGCCCAACGACGCCGTTTTCTGAGCATTCGGGGATTTAGCGGCGTTTTTCAAGAAGCGCC
*
31760221 GCTAATGCTCAAGGCTTTAGCGGTGTTTTTGAGAAAGCG
195 GCTAATGCTCAAGGCTTTAGCGGCGTTTTTGAGAAAGCG
31760260 CCGCAAAAAA
Statistics
Matches: 212, Mismatches: 21, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
268 9 0.04
269 203 0.96
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (268 bp):
AAAGCACCGCAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCATTCAGGGATTTAGCGGCAT
TTTTGAGGAAGCGCCGCTAATGCTCAGGGCTTTAACAGCATTTTTGAAAAAGCACCGCAAAAAAA
CCTAAGCCCAACGACGCCGTTTTCTGAGCATTCGGGGATTTAGCGGCGTTTTTCAAGAAGCGCCG
CTAATGCTCAAGGCTTTAGCGGCGTTTTTGAGAAAGCGACGCTAATGCTTAGGGATTTAGTGGCG
TTTTTGAG
Found at i:31760394 original size:302 final size:303
Alignment explanation
Indices: 31760015--31760573 Score: 800
Period size: 302 Copynumber: 1.8 Consensus size: 303
31760005 GGATTTAGTG
* * *
31760015 GCGTTTTTGAGAAAGCACCGCAAAAAAACCTAAGCCCAATGACGCCATTTTCTGAGCATTCGGGG
1 GCGTTTTTGACAAAGCACCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGACCATTCGGGG
* * * *
31760080 ATTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCTGGGCTTTAGCAGCGTTTTTGAGAAAGC
66 ATTTAACGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCAGCGTTTTTGAGAAAGC
* * * * * *
31760145 GCCGCCAAAAAACCTATGTCCAACGACGTCGTTTTCTGAGCATTCG-GGGATTTAGCGGCGTTTT
131 GCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTCTGACCATTCGAGGGATTTAGCGGCGTTTT
* * *
31760209 TCAAGA-AGCGCCGCTAATGCTCAAGG-CTTTAGCGGTGTTTTTGAGAAAGCGCCGCAAAAAAAC
196 T-AAGATAGCGCCGCTAATGCTC-AGGAATTTAGCGGCGTTTTCGAGAAAGCGCCGCAAAAAAAC
31760272 CTAAGCCCAACGACGTTGTTTTCTGAGCTTTTCGGGGATTTTGCA
259 CTAAGCCCAACGACGTTGTTTTCTGAGCTTTTCGGGGATTTTGCA
** * * *
31760317 GCGTTTTTGACAAAGTGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGACCTTTCGGGG
1 GCGTTTTTGACAAAGCACCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGACCATTCGGGG
* **
31760382 ATTTAACGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGATTAAGC
66 ATTTAACGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCAGCGTTTTTGAGAAAGC
* * *
31760447 GCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTTTGACCTTTCGAGGGCTTTAGCGGCGTTTT
131 GCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTCTGACCATTCGAGGGATTTAGCGGCGTTTT
* * * *
31760512 TAATATAGCGCCGCTAATGCTCTGGAATTTAGCGGCGTTTTCGGGAAAGTGCCGCAAAAAAA
196 TAAGATAGCGCCGCTAATGCTCAGGAATTTAGCGGCGTTTTCGAGAAAGCGCCGCAAAAAAA
31760574 TTATTTGTCT
Statistics
Matches: 223, Mismatches: 31, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
302 158 0.71
303 65 0.29
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (303 bp):
GCGTTTTTGACAAAGCACCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGACCATTCGGGG
ATTTAACGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCAGCGTTTTTGAGAAAGC
GCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTCTGACCATTCGAGGGATTTAGCGGCGTTTT
TAAGATAGCGCCGCTAATGCTCAGGAATTTAGCGGCGTTTTCGAGAAAGCGCCGCAAAAAAACCT
AAGCCCAACGACGTTGTTTTCTGAGCTTTTCGGGGATTTTGCA
Found at i:31760396 original size:73 final size:74
Alignment explanation
Indices: 31760236--31760410 Score: 235
Period size: 74 Copynumber: 2.4 Consensus size: 74
31760226 TGCTCAAGGC
* * ** *
31760236 TTTAGCGGTGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGTTGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTGACAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCC
31760301 TTTCGGGGA
66 TTTCGGGGA
* * * *
31760310 TTTTGCAGCGTTTTTGACAAAGTGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGA-CC
1 TTTAGCGGCGTTTTTGACAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCC
31760374 TTTCGGGGA
66 TTTCGGGGA
* * *
31760383 TTTAACGGCGTTTTTAAGAAAGCGCCGC
1 TTTAGCGGCGTTTTTGACAAAGCGCCGC
31760411 TAATGCTCAG
Statistics
Matches: 86, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
73 32 0.37
74 54 0.63
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (74 bp):
TTTAGCGGCGTTTTTGACAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCC
TTTCGGGGA
Found at i:31760511 original size:188 final size:188
Alignment explanation
Indices: 31760118--31760512 Score: 560
Period size: 188 Copynumber: 2.1 Consensus size: 188
31760108 CTAATGCTCT
* * * * *
31760118 GGGCTTTAGCAGCGTTTTTGAGAAAGCGCCGCCAAAAAACCTATGTCCAACGACGTCGTTTTCTG
1 GGGCTTTAGCAGCGTTTTTGACAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTG
* * *
31760183 AGCATTCGGGGATTTAGCGGCGTTTTTCAAGAAGCGCCGCTAATGCTCAAGGCTTTAGCGGTGTT
66 ACCATTCGGGGATTTAACGGCGTTTTTCAAGAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTT
* ** *
31760248 TTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGTTGTTTTCTGAGCTTTTCG
131 TTTGAGAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTCTGAGCCTTTCG
* * * *
31760306 GGGATTTTGCAGCGTTTTTGACAAAGTGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTG
1 GGGCTTTAGCAGCGTTTTTGACAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTG
* *
31760371 ACCTTTCGGGGATTTAACGGCGTTTTT-AAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGT
66 ACCATTCGGGGATTTAACGGCGTTTTTCAAG-AAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGT
** *
31760435 TTTTGATTAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTTTGA-CCTTTCG
130 TTTTGAGAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTCTGAGCCTTTCG
*
31760493 AGGGCTTTAGCGGCGTTTTT
1 -GGGCTTTAGCAGCGTTTTT
31760513 AATATAGCGC
Statistics
Matches: 181, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
187 9 0.05
188 172 0.95
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.28
Consensus pattern (188 bp):
GGGCTTTAGCAGCGTTTTTGACAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTG
ACCATTCGGGGATTTAACGGCGTTTTTCAAGAAGCGCCGCTAATGCTCAAGGCTTTAGCGGCGTT
TTTGAGAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTCTGAGCCTTTCG
Found at i:31760571 original size:114 final size:114
Alignment explanation
Indices: 31760317--31760573 Score: 352
Period size: 115 Copynumber: 2.2 Consensus size: 114
31760307 GGATTTTGCA
* * * *
31760317 GCGTTTTTGACAAAGTGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTCTGACCTTTCGGGG
1 GCGTTTTCGAGAAAGTGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTCTGACCTTTCGGGG
**
31760382 ATTTAACGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCG
66 ATTTAACGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGAATTTAGCG
* ** * *
31760431 GCGTTTTTGATTAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTTTGACCTTTCGAGG
1 GCGTTTTCGAGAAAGTGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTCTGACCTTTCG-GG
* * * * *
31760496 GCTTTAGCGGCGTTTTTAATATAGCGCCGCTAATGCTCTGGAATTTAGCG
65 GATTTAACGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGAATTTAGCG
*
31760546 GCGTTTTCGGGAAAGTGCCGCAAAAAAA
1 GCGTTTTCGAGAAAGTGCCGCAAAAAAA
31760574 TTATTTGTCT
Statistics
Matches: 124, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
114 56 0.45
115 68 0.55
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.27
Consensus pattern (114 bp):
GCGTTTTCGAGAAAGTGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTCTGACCTTTCGGGG
ATTTAACGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGAATTTAGCG
Found at i:31764900 original size:21 final size:21
Alignment explanation
Indices: 31764874--31764924 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
31764864 CTACAACTTA
*
31764874 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCGGCAGCGAGAG
* *
31764895 AAGCAGAGGCTGCAGTGAGAG
1 AAGCAGAGGCGGCAGCGAGAG
*
31764916 AAGTAGAGG
1 AAGCAGAGG
31764925 TTCAAAAGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.33, C:0.14, G:0.47, T:0.06
Consensus pattern (21 bp):
AAGCAGAGGCGGCAGCGAGAG
Found at i:31764985 original size:87 final size:87
Alignment explanation
Indices: 31764834--31765010 Score: 273
Period size: 87 Copynumber: 2.0 Consensus size: 87
31764824 GACCACCGTT
* * *
31764834 GAGGTTCAAAGGAAATATGAAGAACTCTAGCTACAACTTAAAGCAGAGGCGGCAGCGAGGGAAGC
1 GAGGTTCAAAAGAAATATGAAGAACTCCAGCTACAACTTAAAGCAGAGGCGGCAGCGAGAGAAGC
** *
31764899 AGAGGCTGCAGTGAGAGAAGTA
66 AGACACTGCAGTGAGAGAAGCA
* *
31764921 GAGGTTCAAAAGAAATATGAAGAACTCCAGCTACAACTTAAAGCAGATGCGGCATCGAGAGAAGC
1 GAGGTTCAAAAGAAATATGAAGAACTCCAGCTACAACTTAAAGCAGAGGCGGCAGCGAGAGAAGC
*
31764986 AGACACTGCAGTGAGGGAAGCA
66 AGACACTGCAGTGAGAGAAGCA
31765008 GAG
1 GAG
31765011 CAGAGAAAAA
Statistics
Matches: 81, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
87 81 1.00
ACGTcount: A:0.39, C:0.16, G:0.31, T:0.14
Consensus pattern (87 bp):
GAGGTTCAAAAGAAATATGAAGAACTCCAGCTACAACTTAAAGCAGAGGCGGCAGCGAGAGAAGC
AGACACTGCAGTGAGAGAAGCA
Found at i:31765027 original size:87 final size:86
Alignment explanation
Indices: 31764846--31765036 Score: 242
Period size: 87 Copynumber: 2.2 Consensus size: 86
31764836 GGTTCAAAGG
* * **
31764846 AAATATGAAGAACTCTAGCTACAACTTAAAGCAGAGGCGGCAGCGAGGGAAGCAGAGGCTGCAGT
1 AAATATGAAGAACTCCAGCTACAACTTAAAGCAGAGGCGGCAGCGAGAGAAGCAGACACTGCAGT
* *
31764911 GAGAGAAGTAGAGGTTCAAAAG
66 GAGAGAAGCAGAGG-TCAAAAA
* *
31764933 AAATATGAAGAACTCCAGCTACAACTTAAAGCAGATGCGGCATCGAGAGAAGCAGACACTGCAGT
1 AAATATGAAGAACTCCAGCTACAACTTAAAGCAGAGGCGGCAGCGAGAGAAGCAGACACTGCAGT
*
31764998 GAGGGAAGCAGA-G-CAGAGAAA
66 GAGAGAAGCAGAGGTCA-A-AAA
*
31765019 AAAGTATGACGAACTCCA
1 AAA-TATGAAGAACTCCA
31765037 ACAGCAGCTT
Statistics
Matches: 91, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
84 2 0.02
85 1 0.01
86 6 0.07
87 82 0.90
ACGTcount: A:0.41, C:0.17, G:0.29, T:0.13
Consensus pattern (86 bp):
AAATATGAAGAACTCCAGCTACAACTTAAAGCAGAGGCGGCAGCGAGAGAAGCAGACACTGCAGT
GAGAGAAGCAGAGGTCAAAAA
Found at i:31765445 original size:13 final size:13
Alignment explanation
Indices: 31765427--31765451 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31765417 AAGAAGCCCC
31765427 GCTAAAGAACATT
1 GCTAAAGAACATT
31765440 GCTAAAGAACAT
1 GCTAAAGAACAT
31765452 GATCTTTAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.20
Consensus pattern (13 bp):
GCTAAAGAACATT
Found at i:31765485 original size:56 final size:56
Alignment explanation
Indices: 31765387--31765494 Score: 171
Period size: 56 Copynumber: 1.9 Consensus size: 56
31765377 AACGCCGCTA
* *
31765387 AAAGAACATGACCTTTAGTGGCGTTTGCGGAAGAAGCCCCGCTAAAGAACATTGCT
1 AAAGAACATGACCTTTAGCGGCGTTTGCGGAAAAAGCCCCGCTAAAGAACATTGCT
* * *
31765443 AAAGAACATGATCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGAACAT
1 AAAGAACATGACCTTTAGCGGCGTTTGCGGAAAAAGCCCCGCTAAAGAACAT
31765495 GATCTTTAGC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 47 1.00
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.21
Consensus pattern (56 bp):
AAAGAACATGACCTTTAGCGGCGTTTGCGGAAAAAGCCCCGCTAAAGAACATTGCT
Found at i:31765501 original size:43 final size:43
Alignment explanation
Indices: 31765440--31765532 Score: 159
Period size: 43 Copynumber: 2.2 Consensus size: 43
31765430 AAAGAACATT
* *
31765440 GCTAAAGAACATGATCTTTAGCGGCGTTTGTGGAAAAAGCGCC
1 GCTAAAGAACATGATCTTTAGCGGCATTTGTGGAAAAAACGCC
*
31765483 GCTAAAGAACATGATCTTTAGCGGCATTTGTTGAAAAAACGCC
1 GCTAAAGAACATGATCTTTAGCGGCATTTGTGGAAAAAACGCC
31765526 GCTAAAG
1 GCTAAAG
31765533 GCCTGAAAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (43 bp):
GCTAAAGAACATGATCTTTAGCGGCATTTGTGGAAAAAACGCC
Found at i:31765559 original size:22 final size:22
Alignment explanation
Indices: 31765514--31765559 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
31765504 CGGCATTTGT
**
31765514 TGAAAAAACGCCGCTAAAGGCC
1 TGAAAAAACGCCGCTAAAAACC
31765536 TGAAAAAACGCCGCTAAAAACC
1 TGAAAAAACGCCGCTAAAAACC
31765558 TG
1 TG
31765560 TTTTGGTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.43, C:0.26, G:0.20, T:0.11
Consensus pattern (22 bp):
TGAAAAAACGCCGCTAAAAACC
Found at i:31765776 original size:53 final size:53
Alignment explanation
Indices: 31765713--31765822 Score: 220
Period size: 53 Copynumber: 2.1 Consensus size: 53
31765703 TTCATGAAAT
31765713 TCTTCATCGAATTCTAAAGCTTTGTATTCTCATATTTGTTATAGAAAACTAAA
1 TCTTCATCGAATTCTAAAGCTTTGTATTCTCATATTTGTTATAGAAAACTAAA
31765766 TCTTCATCGAATTCTAAAGCTTTGTATTCTCATATTTGTTATAGAAAACTAAA
1 TCTTCATCGAATTCTAAAGCTTTGTATTCTCATATTTGTTATAGAAAACTAAA
31765819 TCTT
1 TCTT
31765823 ACATTTAATA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 57 1.00
ACGTcount: A:0.33, C:0.15, G:0.09, T:0.43
Consensus pattern (53 bp):
TCTTCATCGAATTCTAAAGCTTTGTATTCTCATATTTGTTATAGAAAACTAAA
Found at i:31777921 original size:30 final size:30
Alignment explanation
Indices: 31777865--31777922 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
31777855 TCTGAACTTT
*
31777865 GGGGCAAAAACATAATTATGTAAAAGTTTA
1 GGGGCAAAAACATAATTATGCAAAAGTTTA
* *
31777895 GGGGCAAAATCATAAATT-TGCCAAAGTT
1 GGGGCAAAAACAT-AATTATGCAAAAGTT
31777923 AGAGTCGAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.43, C:0.10, G:0.21, T:0.26
Consensus pattern (30 bp):
GGGGCAAAAACATAATTATGCAAAAGTTTA
Found at i:31778152 original size:13 final size:13
Alignment explanation
Indices: 31778134--31778160 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
31778124 TTTACAGCAA
31778134 TTATGAATTTATT
1 TTATGAATTTATT
31778147 TTATGAATTTATT
1 TTATGAATTTATT
31778160 T
1 T
31778161 AATGTTGACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:31778334 original size:50 final size:50
Alignment explanation
Indices: 31778259--31778550 Score: 356
Period size: 50 Copynumber: 5.9 Consensus size: 50
31778249 CATTTGGGTA
* *
31778259 GAGAGATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
31778309 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* *
31778359 GAGAGGTTCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
** * * * *
31778409 GAGAGGTCCCCCGTAAGACCATGTCTAGGG-TATGGCATGGGCACCAATAT
1 GAGAGGTCCCATGTAAGACCATGTCT-GGGACATGGCATTGGCACCGAGAT
* * * * * *
31778459 GAGAGCTCCCATGTAAGACCATATCTGGGATATGGCATTGGTA--GTACAG
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGAT
* ** * *
31778508 GAAACATCCCATGTAAGACCATGTCTGGGACACGGCTTTGGCA
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
31778551 TGTTATTATC
Statistics
Matches: 210, Mismatches: 29, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
49 40 0.19
50 167 0.80
51 3 0.01
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.21
Consensus pattern (50 bp):
GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
Found at i:31789900 original size:41 final size:41
Alignment explanation
Indices: 31789793--31789943 Score: 169
Period size: 41 Copynumber: 3.6 Consensus size: 41
31789783 CGAAGATTAA
* ** * * *
31789793 TTTTGA-TTTTTCAACATCAACATGACGAGATGGAAATTAA
1 TTTTGATTTTTTCAACATCAACATGGCGAGGGGGAGATCAG
31789833 TTTTGATTTATTTTTCAACATCAACATGGCGAGGGGGAGATCAG
1 TTTTGA--T-TTTTTCAACATCAACATGGCGAGGGGGAGATCAG
* *
31789877 TTTTGATTTTTTCAACATTAACATAGCGAGGGGGAGATCAG
1 TTTTGATTTTTTCAACATCAACATGGCGAGGGGGAGATCAG
* * *
31789918 TTCTGTTTTTTTCAACACCAACATGG
1 TTTTGATTTTTTCAACATCAACATGG
31789944 TGAGACAGAG
Statistics
Matches: 94, Mismatches: 13, Indels: 7
0.82 0.11 0.06
Matches are distributed among these distances:
40 6 0.06
41 53 0.56
42 1 0.01
44 34 0.36
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.36
Consensus pattern (41 bp):
TTTTGATTTTTTCAACATCAACATGGCGAGGGGGAGATCAG
Found at i:31791399 original size:22 final size:22
Alignment explanation
Indices: 31791372--31791425 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
31791362 TTCTAGGCCA
* *
31791372 TTTTGGG-CACCTTTCAAACATT
1 TTTTGGGTC-CCTTCCAAAAATT
31791394 TTTTGGGTCCCTTCCAAAAATT
1 TTTTGGGTCCCTTCCAAAAATT
31791416 TTTTGGGTCC
1 TTTTGGGTCC
31791426 AAGCCATGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 28 0.97
23 1 0.03
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.43
Consensus pattern (22 bp):
TTTTGGGTCCCTTCCAAAAATT
Found at i:31793919 original size:17 final size:17
Alignment explanation
Indices: 31793897--31793938 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
31793887 ACAAAAACTA
31793897 AATTTAATTTCCAATTT
1 AATTTAATTTCCAATTT
31793914 AATTTAATTTCCAATTT
1 AATTTAATTTCCAATTT
31793931 -ATTTAATT
1 AATTTAATT
31793939 AATTATTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 8 0.32
17 17 0.68
ACGTcount: A:0.36, C:0.10, G:0.00, T:0.55
Consensus pattern (17 bp):
AATTTAATTTCCAATTT
Found at i:31802445 original size:4 final size:4
Alignment explanation
Indices: 31802436--31802482 Score: 67
Period size: 4 Copynumber: 11.5 Consensus size: 4
31802426 ATATTTGCTT
* *
31802436 ATAA ATAA ATAA ATAA ATAA ATAA ATAAA ATTA ATAA ATTA ATAA AT
1 ATAA ATAA ATAA ATAA ATAA ATAA AT-AA ATAA ATAA ATAA ATAA AT
31802483 GCTCAAGTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
4 34 0.89
5 4 0.11
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (4 bp):
ATAA
Found at i:31804168 original size:16 final size:16
Alignment explanation
Indices: 31804114--31804158 Score: 81
Period size: 16 Copynumber: 2.8 Consensus size: 16
31804104 TTAATTTTCA
31804114 ATTTAATTTAATTTCTG
1 ATTT-ATTTAATTTCTG
31804131 ATTTATTTAATTTCTG
1 ATTTATTTAATTTCTG
31804147 ATTTATTTAATT
1 ATTTATTTAATT
31804159 ATTTATTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
16 24 0.86
17 4 0.14
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.62
Consensus pattern (16 bp):
ATTTATTTAATTTCTG
Found at i:31805143 original size:39 final size:40
Alignment explanation
Indices: 31805088--31805270 Score: 167
Period size: 40 Copynumber: 4.5 Consensus size: 40
31805078 AAATATATTT
* *
31805088 ATTTTTTAAAATTTTAAAATATTTTTTACATAC-TTTTTAA
1 ATTTTTT-TAATTTTAAAATATTTTTTAAATACTTTTTTAA
* *
31805128 ATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTTA
1 ATTTTTTTAATTTTAAAATATTTTTTAAATAC-TTTTTTAA
* *
31805169 A-TTTTTTAATTTTAAAATATTTTTTTTAAT--TTTTTTTA
1 ATTTTTTTAATTTTAAAATA-TTTTTTAAATACTTTTTTAA
*** * *
31805207 ATTTTAAAATATTTTAAAAATATTTTTAAAATACTTTTTTTA
1 ATTTTTTTA-ATTTT-AAAATATTTTTTAAATACTTTTTTAA
*
31805249 ATTTTTTAAAATTTTTAAAATA
1 ATTTTTT-TAA-TTTTAAAATA
31805271 AAAATGGCCC
Statistics
Matches: 120, Mismatches: 13, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
38 9 0.08
39 26 0.22
40 38 0.32
41 21 0.17
42 20 0.17
43 6 0.05
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (40 bp):
ATTTTTTTAATTTTAAAATATTTTTTAAATACTTTTTTAA
Found at i:31805181 original size:29 final size:29
Alignment explanation
Indices: 31805149--31805221 Score: 121
Period size: 30 Copynumber: 2.5 Consensus size: 29
31805139 TTTAAAATAT
31805149 TTTTAAAATACTTTTTTTTAA-TTTTTTAA
1 TTTTAAAATA-TTTTTTTTAATTTTTTTAA
31805178 TTTTAAAATATTTTTTTTAATTTTTTTTAA
1 TTTTAAAATATTTTTTTTAA-TTTTTTTAA
31805208 TTTTAAAATATTTT
1 TTTTAAAATATTTT
31805222 AAAAATATTT
Statistics
Matches: 42, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
28 10 0.24
29 10 0.24
30 22 0.52
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.67
Consensus pattern (29 bp):
TTTTAAAATATTTTTTTTAATTTTTTTAA
Found at i:31805228 original size:11 final size:10
Alignment explanation
Indices: 31805207--31805270 Score: 58
Period size: 10 Copynumber: 6.1 Consensus size: 10
31805197 ATTTTTTTTA
31805207 ATTTTAAAAT
1 ATTTTAAAAT
31805217 ATTTTAAAAAT
1 ATTTT-AAAAT
31805228 ATTTTTAAAAT
1 A-TTTTAAAAT
**
31805239 ACTTTTTTTAAT
1 A--TTTTAAAAT
*
31805251 TTTTTAAAAT
1 ATTTTAAAAT
31805261 -TTTTAAAAT
1 ATTTTAAAAT
31805270 A
1 A
31805271 AAAATGGCCC
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
9 9 0.20
10 12 0.27
11 12 0.27
12 12 0.27
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (10 bp):
ATTTTAAAAT
Found at i:31805233 original size:30 final size:30
Alignment explanation
Indices: 31805170--31805233 Score: 85
Period size: 30 Copynumber: 2.2 Consensus size: 30
31805160 TTTTTTTTAA
***
31805170 TTTTTTAATTTTAAAATATTTTTTTTAATT
1 TTTTTTAATTTTAAAATATTTTTAAAAATT
*
31805200 TTTTTTAATTTTAAAATA-TTTTAAAAATA
1 TTTTTTAATTTTAAAATATTTTTAAAAATT
31805229 TTTTT
1 TTTTT
31805234 AAAATACTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
29 12 0.40
30 18 0.60
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (30 bp):
TTTTTTAATTTTAAAATATTTTTAAAAATT
Found at i:31805244 original size:12 final size:11
Alignment explanation
Indices: 31805208--31805270 Score: 69
Period size: 11 Copynumber: 5.9 Consensus size: 11
31805198 TTTTTTTTAA
31805208 TTTTAAAATAT
1 TTTTAAAATAT
*
31805219 TTTAAAAATAT
1 TTTTAAAATAT
31805230 TTTTAAAATACT
1 TTTTAAAATA-T
**
31805242 TTTTTTAAT-T
1 TTTTAAAATAT
31805252 TTTT-AAA-AT
1 TTTTAAAATAT
31805261 TTTTAAAATA
1 TTTTAAAATA
31805271 AAAATGGCCC
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
9 7 0.16
10 8 0.19
11 20 0.47
12 8 0.19
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:31805264 original size:70 final size:69
Alignment explanation
Indices: 31805121--31805253 Score: 178
Period size: 70 Copynumber: 1.9 Consensus size: 69
31805111 TTTTACATAC
* **
31805121 TTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTTAATTTTTTAATTTTAAAA
1 TTTTTAAATTTTTTTAATTTTAAAATATTTTAAAAATACTTTTTAATAATTTTTTAATTTTAAAA
31805186 TATTT
66 TA-TT
* *
31805191 TTTTTAATTTTTTTTAATTTTAAAATATTTTAAAAATA-TTTTTAAAATACTTTTTTTAATTTT
1 TTTTTAAATTTTTTTAATTTTAAAATATTTTAAAAATACTTTTT--AATA-ATTTTTTAATTTT
31805254 TTAAAATTTT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
69 5 0.09
70 36 0.65
71 2 0.04
72 12 0.22
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (69 bp):
TTTTTAAATTTTTTTAATTTTAAAATATTTTAAAAATACTTTTTAATAATTTTTTAATTTTAAAA
TATT
Found at i:31812983 original size:20 final size:21
Alignment explanation
Indices: 31812953--31813007 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
31812943 GAGTATATAT
*
31812953 ATACATA-TATATTTTACATA
1 ATACATATTATATTGTACATA
31812973 ATAC-TATTATATATGTACATA
1 ATACATATTATAT-TGTACATA
* *
31812994 TTGCATATTATATT
1 ATACATATTATATT
31813008 ATTTTCATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 2 0.07
20 9 0.31
21 10 0.34
22 8 0.28
ACGTcount: A:0.40, C:0.09, G:0.04, T:0.47
Consensus pattern (21 bp):
ATACATATTATATTGTACATA
Found at i:31812986 original size:22 final size:22
Alignment explanation
Indices: 31812958--31813021 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
31812948 TATATATACA
31812958 TATATATTTTACATAATACTAT
1 TATATATTTTACATAATACTAT
* * *
31812980 TATATA-TGTACATATTGCATAT
1 TATATATTTTACATAATAC-TAT
*
31813002 TATATTATTTT-CATTATACT
1 TATA-TATTTTACATAATACT
31813022 TACATACATG
Statistics
Matches: 32, Mismatches: 7, Indels: 6
0.71 0.16 0.13
Matches are distributed among these distances:
21 9 0.28
22 14 0.44
23 7 0.22
24 2 0.06
ACGTcount: A:0.36, C:0.09, G:0.03, T:0.52
Consensus pattern (22 bp):
TATATATTTTACATAATACTAT
Found at i:31817122 original size:3 final size:3
Alignment explanation
Indices: 31817114--31817148 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
31817104 CATTTTAATA
31817114 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
31817149 CTTGATTTTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:31817256 original size:20 final size:21
Alignment explanation
Indices: 31817226--31817280 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
31817216 GAGTATATAT
*
31817226 ATACATA-TATATTTTACATA
1 ATACATATTATATTGTACATA
31817246 ATAC-TATTATATATGTACATA
1 ATACATATTATAT-TGTACATA
* *
31817267 TTTCATATTATATT
1 ATACATATTATATT
31817281 ATTTTCATTA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 2 0.07
20 9 0.31
21 10 0.34
22 8 0.28
ACGTcount: A:0.40, C:0.09, G:0.02, T:0.49
Consensus pattern (21 bp):
ATACATATTATATTGTACATA
Found at i:31819099 original size:5 final size:5
Alignment explanation
Indices: 31819089--31819115 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
31819079 AAAAGAAAGA
31819089 AAATC AAATC AAATC AAATC AAATC AA
1 AAATC AAATC AAATC AAATC AAATC AA
31819116 GCAGATTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.63, C:0.19, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATC
Found at i:31820076 original size:19 final size:19
Alignment explanation
Indices: 31820054--31820096 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
31820044 TTCCAGTTCA
* *
31820054 ATTTAGTAATTTTATTATT
1 ATTTAGTAATGTAATTATT
**
31820073 ATTTTTTAATGTAATTATT
1 ATTTAGTAATGTAATTATT
31820092 ATTTA
1 ATTTA
31820097 ATCATTTATT
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.63
Consensus pattern (19 bp):
ATTTAGTAATGTAATTATT
Found at i:31832510 original size:45 final size:44
Alignment explanation
Indices: 31832399--31833250 Score: 349
Period size: 44 Copynumber: 19.7 Consensus size: 44
31832389 TCGCATCTAG
*
31832399 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
* * * * *
31832443 TCCTGTCTTCCTGAAGTTGCAGT-GAGGTAGACTGAA-TATGGCAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGA-GCAGACT-AAGTA-AGCAAA
* *
31832488 TCTTATCTCCCTGAAGTTGCAGTGGAGTAGA-TTAG--AGCCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAG-C-A-AA
* * * * **
31832532 TCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAA--AACCTTGGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC--AAA
* * * * * * * *
31832576 TCTTATCTCTCTGAAGTTACAG-AGAGCAGA-T-CG-CATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
* * *
31832616 TCTTATCTCCCTGAAGTTGCAGTGGAGCGGACTAAGCAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
* * *
31832660 TCCTATCTTCCTGAAG-TG-A----AGCAGACTGAAG-ATGACAAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAG-CAAA
* * *
31832699 TCTTATCTCCCTGAAGTTACAGTAGAGCAGA-TTA--AAGCCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAG-C-A-AA
* * * * *
31832743 TCCTATCTCCATGAAGTTGCAGTGGAGCAGATTAA--AACCTTAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC--AAA
* * * * * * *
31832787 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CG-CATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
* * *
31832827 TCTTATCTCCCTCAAGTTGCAGTGGAGAAGACTAAGTAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
* * *
31832871 TCTTATC-CTCCTGAAGTTGTAGTGGGGCAGACTGAA-TATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGAGCAGACT-AAGTA-AGCAAA
* * * *
31832916 CCTTATCTCCTTGAAGTTGCAGTGGAGCAG-GTTA--AAGCCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAG-C-A-AA
* * * * * * **
31832960 TCCTATCTCCCTAAAGTTGTAGTGGAGCGGATTAA--AATCTTGGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC--AAA
* * * * * * * *
31833004 TCTTATCTCTCTAAAGTTGCAG-AGAGCAGA-T-CG-CATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
*
31833044 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
*
31833088 TCTTATC-CTCCTGAAGTTGCAGTAGG-GCAGACTGAAG-ATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGT-GGAGCAGACT-AAGTA-AGCAAA
* * * * * *
31833133 CCTTATCTCCCTGAAGTTACAGTAGAGCAG-GTTA--AAGCCGATAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAG-C-A-AA
* * *
31833177 TCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA--AATCACAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA-A-A
* *
31833221 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
31833251 TCGCATCTAG
Statistics
Matches: 614, Mismatches: 136, Indels: 117
0.71 0.16 0.13
Matches are distributed among these distances:
38 9 0.01
39 20 0.03
40 61 0.10
41 23 0.04
42 22 0.04
43 46 0.07
44 314 0.51
45 115 0.19
46 4 0.01
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
Found at i:31833283 original size:217 final size:217
Alignment explanation
Indices: 31832364--31833272 Score: 1391
Period size: 217 Copynumber: 4.2 Consensus size: 217
31832354 AATGATCCTG
*
31832364 TCTCCCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
1 TCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
* * * * *
31832429 ACTAAGTAAGCAAGTCCTGTCTTCCTGAAGTTGCAGT-GAGGTAGACTGAATATGGCAAATCTTA
66 ACTAAGTAAGCAAGTCCTATCCTCCTGAAGTTGCAGTAG-GGCAGACTGAAGATGGCAAACCTTA
* * * * *
31832493 TCTCCCTGAAGTTGCAGTGGAGTAGATTAGAGCCGATAATCCTATCTCCCTGAAGTTACAGTGGA
130 TCTCCCTGAAGTTACAGTAGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGA
*
31832558 GCAGATTAAAACCTTGGATCTTA
195 GCAGATTAAAACCTTAGATCTTA
* *
31832581 TCTCTCTGAAGTTACAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCGG
1 TCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
* * * *
31832646 ACTAAGCAAGCAAGTCCTATCTTCCTGAAG-TG-A--A--GCAGACTGAAGATGACAAATCTTAT
66 ACTAAGTAAGCAAGTCCTATCCTCCTGAAGTTGCAGTAGGGCAGACTGAAGATGGCAAACCTTAT
*
31832705 CTCCCTGAAGTTACAGTAGAGCAGATTAAAGCCGATAATCCTATCTCCATGAAGTTGCAGTGGAG
131 CTCCCTGAAGTTACAGTAGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAG
31832770 CAGATTAAAACCTTAGATCTTA
196 CAGATTAAAACCTTAGATCTTA
* *
31832792 TCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTCAAGTTGCAGTGGAGAAG
1 TCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
* * * *
31832857 ACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGTAGTGGGGCAGACTGAATATGGCAAACCTTAT
66 ACTAAGTAAGCAAGTCCTATCCTCCTGAAGTTGCAGTAGGGCAGACTGAAGATGGCAAACCTTAT
* * * * * *
31832922 CTCCTTGAAGTTGCAGTGGAGCAGGTTAAAGCCGATAATCCTATCTCCCTAAAGTTGTAGTGGAG
131 CTCCCTGAAGTTACAGTAGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAG
* * *
31832987 CGGATTAAAATCTTGGATCTTA
196 CAGATTAAAACCTTAGATCTTA
*
31833009 TCTCTCTAAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
1 TCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
*
31833074 ACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTAGGGCAGACTGAAGATGGCAAACCTTAT
66 ACTAAGTAAGCAAGTCCTATCCTCCTGAAGTTGCAGTAGGGCAGACTGAAGATGGCAAACCTTAT
* *
31833139 CTCCCTGAAGTTACAGTAGAGCAGGTTAAAGCCGATAGTCCTATCTCCCTGAAGTTGCAGTGGAG
131 CTCCCTGAAGTTACAGTAGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAG
* **
31833204 CAGATTAAAATCACAGATCTTA
196 CAGATTAAAACCTTAGATCTTA
31833226 TCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCT
1 TCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCT
31833273 AACATTGCAG
Statistics
Matches: 632, Mismatches: 53, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
211 190 0.30
212 2 0.00
213 1 0.00
215 1 0.00
216 2 0.00
217 436 0.69
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (217 bp):
TCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAG
ACTAAGTAAGCAAGTCCTATCCTCCTGAAGTTGCAGTAGGGCAGACTGAAGATGGCAAACCTTAT
CTCCCTGAAGTTACAGTAGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAG
CAGATTAAAACCTTAGATCTTA
Found at i:31833650 original size:5 final size:5
Alignment explanation
Indices: 31833642--31833673 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
31833632 AAAGGAAAGA
31833642 AAATC AAATC AAATC AAATC AAATC AAATC AA
1 AAATC AAATC AAATC AAATC AAATC AAATC AA
31833674 GCAGATTTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.62, C:0.19, G:0.00, T:0.19
Consensus pattern (5 bp):
AAATC
Found at i:31838164 original size:27 final size:26
Alignment explanation
Indices: 31838133--31838269 Score: 139
Period size: 27 Copynumber: 5.1 Consensus size: 26
31838123 ACACGTGAAA
31838133 AAAGGAACGCCTTTGTGGCGCAATATG
1 AAAGGAACGCCTTTGTGGCG-AATATG
*
31838160 AAAGGAAAGCCTTTGTGGCGAATTATG
1 AAAGGAACGCCTTTGTGGCGAA-TATG
* * * *
31838187 AAAGGAACACATTTATGGTGCAATATG
1 AAAGGAACGCCTTTGTGGCG-AATATG
* * *
31838214 AAAGTAATGCCTTTGTGGCGAAATACG
1 AAAGGAACGCCTTTGTGGCG-AATATG
* *
31838241 AAAGGAATGCTTTTGTGGCGAATCATG
1 AAAGGAACGCCTTTGTGGCGAAT-ATG
31838268 AA
1 AA
31838270 GGGATAGCCT
Statistics
Matches: 90, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
26 5 0.06
27 83 0.92
28 2 0.02
ACGTcount: A:0.34, C:0.13, G:0.27, T:0.26
Consensus pattern (26 bp):
AAAGGAACGCCTTTGTGGCGAATATG
Found at i:31838269 original size:54 final size:54
Alignment explanation
Indices: 31838133--31838279 Score: 170
Period size: 54 Copynumber: 2.7 Consensus size: 54
31838123 ACACGTGAAA
* * *
31838133 AAAGGAACGCCTTTGTGGCGCAATATGAAAGGAAAGCCTTTGTGGCGAATTATG
1 AAAGGAACGCATTTGTGGCGCAATATGAAAGGAAAGCCTTTGTGGCGAAATACG
* * * * *
31838187 AAAGGAACACATTTATGGTGCAATATGAAAGTAATGCCTTTGTGGCGAAATACG
1 AAAGGAACGCATTTGTGGCGCAATATGAAAGGAAAGCCTTTGTGGCGAAATACG
* * * *
31838241 AAAGGAATGCTTTTGTGGCG-AATCATGAAGGGATAGCCT
1 AAAGGAACGCATTTGTGGCGCAAT-ATGAAAGGAAAGCCT
31838280 CTATGGTGAA
Statistics
Matches: 75, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
53 3 0.04
54 72 0.96
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.25
Consensus pattern (54 bp):
AAAGGAACGCATTTGTGGCGCAATATGAAAGGAAAGCCTTTGTGGCGAAATACG
Found at i:31854971 original size:40 final size:40
Alignment explanation
Indices: 31854924--31855105 Score: 180
Period size: 40 Copynumber: 4.6 Consensus size: 40
31854914 TACTCGTTCA
*
31854924 AAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
* *
31854964 AATTGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCCAC
1 AAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCG-CAC
* *
31855005 AAATGCCTTCGGG-CTTAG-CCGG-AATTAGTATCTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCAC
* * * * *
31855043 AAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC
1 AAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCAC
31855084 AAA-GCCTTC-GGACTTAGCCCGG
1 AAATGCCTTCGGGACTTAGCCCGG
31855106 ACATCATTCA
Statistics
Matches: 120, Mismatches: 13, Indels: 19
0.79 0.09 0.12
Matches are distributed among these distances:
37 2 0.02
38 13 0.11
39 27 0.22
40 52 0.43
41 26 0.22
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCAC
Found at i:31855106 original size:79 final size:81
Alignment explanation
Indices: 31854924--31855106 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 81
31854914 TACTCGTTCA
* * *
31854924 AAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 AAATGCCTTC-GGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
31854988 ATTTAGTAACTCGCCAC
65 ATATAGTAACTAGCCAC
* * **
31855005 AAATGCCTTCGGGCTTAG-CCGGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AAATGCCTTCGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
31855067 ATATGGTCACTTAG-CAC
65 ATATAGTAAC-TAGCCAC
31855084 AAA-GCCTTCGGACTTAGCCCGGA
1 AAATGCCTTCGGACTTAGCCCGGA
31855107 CATCATTCAA
Statistics
Matches: 86, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
78 16 0.19
79 51 0.59
80 9 0.10
81 10 0.12
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
AAATGCCTTCGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCCAC
Found at i:31863040 original size:41 final size:40
Alignment explanation
Indices: 31862975--31863159 Score: 209
Period size: 41 Copynumber: 4.6 Consensus size: 40
31862965 GCTACTCGTT
*
31862975 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
31863015 CAAATTGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAA-TGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
31863056 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
31863095 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
31863136 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
31863160 ACATCATTCA
Statistics
Matches: 124, Mismatches: 12, Indels: 18
0.81 0.08 0.12
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 42 0.34
41 47 0.38
42 2 0.02
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:31863087 original size:80 final size:82
Alignment explanation
Indices: 31862975--31863160 Score: 231
Period size: 80 Copynumber: 2.3 Consensus size: 82
31862965 GCTACTCGTT
* *
31862975 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATTGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAA-TGCCTTC-GGATCTTAACC
* *
31863038 CGGATTTAGTAAC-TCGCA
64 CGGATATAGTAACTTAGCA
* **
31863056 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
31863119 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
31863136 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
31863161 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
78 3 0.03
79 31 0.34
80 43 0.47
81 15 0.16
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:31864913 original size:20 final size:20
Alignment explanation
Indices: 31864888--31864926 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
31864878 CTGTCACAAC
31864888 TGATCAATGATGCTTTGATT
1 TGATCAATGATGCTTTGATT
*
31864908 TGATCAATGATGTTTTGAT
1 TGATCAATGATGCTTTGAT
31864927 ACAAACGTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.08, G:0.21, T:0.46
Consensus pattern (20 bp):
TGATCAATGATGCTTTGATT
Found at i:31876023 original size:42 final size:42
Alignment explanation
Indices: 31875956--31876042 Score: 138
Period size: 42 Copynumber: 2.1 Consensus size: 42
31875946 CGTGTGTGTC
*
31875956 TCCGGCCTCTATCTCTTGACCAAAGCACTGATGAGTGAGGGA
1 TCCGGCCTCTATCTCTTAACCAAAGCACTGATGAGTGAGGGA
* * *
31875998 TCCGGTCTCTATCTCTTAACTAAAGCACTGATGAGTGGGGGA
1 TCCGGCCTCTATCTCTTAACCAAAGCACTGATGAGTGAGGGA
31876040 TCC
1 TCC
31876043 AATTTAGTCC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.26
Consensus pattern (42 bp):
TCCGGCCTCTATCTCTTAACCAAAGCACTGATGAGTGAGGGA
Found at i:31882707 original size:65 final size:65
Alignment explanation
Indices: 31882631--31882772 Score: 259
Period size: 65 Copynumber: 2.2 Consensus size: 65
31882621 GATTTTGTGT
*
31882631 CAAAAATTAATTTGGAAATTTGGATTCAAATTTTTATTTATGAACTTTGAGAATAGTTACTATTA
1 CAAAAAATAATTTGGAAATTTGGATTCAAATTTTTATTTATGAACTTTGAGAATAGTTACTATTA
31882696 CAAAAAATAATTTGGAAATTTGGATTCAAATTTTTATTTATGAACTTTGAGAATAGTTACTATTA
1 CAAAAAATAATTTGGAAATTTGGATTCAAATTTTTATTTATGAACTTTGAGAATAGTTACTATTA
31882761 CAAAGAAA-AATT
1 CAAA-AAATAATT
31882773 CTATGGTTCT
Statistics
Matches: 75, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
65 72 0.96
66 3 0.04
ACGTcount: A:0.42, C:0.06, G:0.12, T:0.40
Consensus pattern (65 bp):
CAAAAAATAATTTGGAAATTTGGATTCAAATTTTTATTTATGAACTTTGAGAATAGTTACTATTA
Found at i:31883897 original size:109 final size:109
Alignment explanation
Indices: 31883743--31883996 Score: 359
Period size: 109 Copynumber: 2.3 Consensus size: 109
31883733 ATCGAAACCA
* * * *
31883743 AGCACCTTAGGGCACG-TTCCTCGAA-TTTCTAAACGCAAAATATTGCCTTATTTTAAAATTTTT
1 AGCACCTTAGGGCATGTTTTCTCAAATTTTC-AAACGCAAAACATTGCCTTATTTTAAAATTTTT
* * * * * *
31883806 AAAAGGATATTAAGTCATTTGGTTGAACGAGAAAAATCGACACTC
65 AAAAGAATATTAAGCCATTTGGTTGAACAAGAAAAAACAACACCC
* *
31883851 AGCGCCTTAGGGCGTGTTTTCTCAAATTTTCAAACGCAAAACATTGCCTTATTTTAAAATTTTTA
1 AGCACCTTAGGGCATGTTTTCTCAAATTTTCAAACGCAAAACATTGCCTTATTTTAAAATTTTTA
31883916 AAAGAATATTAAGCCATTTGGTTGAACAAGAAAAAACAACACCC
66 AAAGAATATTAAGCCATTTGGTTGAACAAGAAAAAACAACACCC
* *
31883960 AGCACCTTAGGGTATGTTTTCTCAAATTTCCAAACGC
1 AGCACCTTAGGGCATGTTTTCTCAAATTTTCAAACGC
31883997 TAAATATTAC
Statistics
Matches: 128, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
108 13 0.10
109 111 0.87
110 4 0.03
ACGTcount: A:0.35, C:0.19, G:0.15, T:0.31
Consensus pattern (109 bp):
AGCACCTTAGGGCATGTTTTCTCAAATTTTCAAACGCAAAACATTGCCTTATTTTAAAATTTTTA
AAAGAATATTAAGCCATTTGGTTGAACAAGAAAAAACAACACCC
Found at i:31884339 original size:16 final size:17
Alignment explanation
Indices: 31884320--31884361 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
31884310 TATATAGATA
31884320 TACATATATAAA-TATG
1 TACATATATAAAGTATG
* *
31884336 TACATATAAAAAGTATT
1 TACATATATAAAGTATG
31884353 TA-ATATATA
1 TACATATATA
31884362 TATTAAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 17 0.77
17 5 0.23
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (17 bp):
TACATATATAAAGTATG
Found at i:31885005 original size:14 final size:15
Alignment explanation
Indices: 31884977--31885005 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
31884967 CCGGCCAATA
31884977 GCCACCGTCGCGCCG
1 GCCACCGTCGCGCCG
31884992 GCCACCGT-GCGCCG
1 GCCACCGTCGCGCCG
31885006 TGGCCGAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.07, C:0.52, G:0.34, T:0.07
Consensus pattern (15 bp):
GCCACCGTCGCGCCG
Found at i:31886184 original size:44 final size:44
Alignment explanation
Indices: 31886136--31886332 Score: 133
Period size: 44 Copynumber: 4.5 Consensus size: 44
31886126 TAATCCGCTT
*
31886136 CACTGCAACTTCAGGAAGATAGGATTAATTTTTTTCGTCTGCTC
1 CACTGCAACTTCAGGAAGATAAGATTAATTTTTTTCGTCTGCTC
* *
31886180 CACTGCAACTTCTAGG-AGATAAGACTGAA-----TGCGATCTGCTC
1 CACTGCAACTTC-AGGAAGATAAGA-TTAATTTTTTTCG-TCTGCTC
* * ** ** *
31886221 TACTGCAACTTCA-GAGAGATAAGATCT-GTGGTTTTAATCCGCTC
1 CACTGCAACTTCAGGA-AGATAAGAT-TAATTTTTTTCGTCTGCTC
* * * *
31886265 CACTGCAACTTCAGGGAGATAGGATTGATTTCTTTCGTCTGCTC
1 CACTGCAACTTCAGGAAGATAAGATTAATTTTTTTCGTCTGCTC
* *
31886309 CACTGTAACTTTAAGG-AGATAAGA
1 CACTGCAAC-TTCAGGAAGATAAGA
31886333 CTGGATGTGA
Statistics
Matches: 116, Mismatches: 23, Indels: 28
0.69 0.14 0.17
Matches are distributed among these distances:
39 1 0.01
40 5 0.04
41 26 0.22
43 1 0.01
44 70 0.60
45 13 0.11
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (44 bp):
CACTGCAACTTCAGGAAGATAAGATTAATTTTTTTCGTCTGCTC
Found at i:31886265 original size:85 final size:85
Alignment explanation
Indices: 31886173--31886988 Score: 510
Period size: 85 Copynumber: 9.4 Consensus size: 85
31886163 ATTTTTTTCG
* *
31886173 TCTGCTCCACTGCAACTTCTA-GGAGATAAGACTGAATGCGATCTGCTCTACTGCAACTTCAGAG
1 TCTGCTCCACTGCAACTTC-AGGGAGATAAGACTGAATGTGATCTGCTCTACTGTAACTTCAGAG
31886237 AGATAAGATCTGTGGTTTTAA
65 AGATAAGATCTGTGGTTTTAA
* * * * * * *
31886258 TCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTTCG-TCTGCTCCACTGTAACTTTA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGA---ATGT-GATCTGCTCTACTGTAACTTCA
* * *
31886322 -AGGAGATAAGA-C--TGGATGTGA
62 GA-GAGATAAGATCTGTGGTTTTAA
* * ** ** * * * * *
31886343 TCTGCTCTACTGTAACTTCAAAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTATAACTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-C--TGAATGTGATCTGCTCTACTGTAACTTCAG
* * **
31886408 AGAGATAGGAT-TGAT-TTCTTTCG
63 AGAGATAAGATCTG-TGGT-TTTAA
* *
31886431 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGTATGTGATCTGCTCTACTGCAACTTCAGAGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGAATGTGATCTGCTCTACTGTAACTTCAGAGA
31886496 GATAAGATCTGTGGTTTTAA
66 GATAAGATCTGTGGTTTTAA
* * *
31886516 TCCGCTCCACTGCAACTTCAGGGAGATAAGACTGTATGTGATCTGCTCTACCGTAACTTCAGAGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGAATGTGATCTGCTCTACTGTAACTTCAGAGA
31886581 GATAAGATCTGTGGTTTTAA
66 GATAAGATCTGTGGTTTTAA
* * * * * *
31886601 TCTGCTCCACTGCAACTTCAGGAAGATAGGA-T-TATCGGCTTCAATCTGCTCCACTGTAACCTC
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGAAT--G--T-GATCTGCTCTACTGTAACTTC
* * ** **
31886664 AGGGAGATAAGATTTGTCATCTTCGA
61 AGAGAGATAAGATCTGTGGT-TTTAA
* * * * * * ** *
31886690 TCTGCCCCACTGCAACTTCAGGGGGTTAAGACTTGATTACTCAGTCTGCTCCGCTGCAACTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGAC-TGAAT-GTGA-TCTGCTCTACTGTAACTTCAG
*** **
31886755 AGAGATAAGATCTGAAATTCTTCGG
63 AGAGATAAGATCTGTGGTT-TT-AA
* * * * * * * *
31886780 TCTACTCCACTGTAACCTCAGGGAGATAAGACCTG-GTGCGATCTACTCTGCTGTAACTTCAAAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTGAATGTGATCTGCTCTACTGTAACTTCAGAG
**
31886844 AGATAAGATCCT-TTATTTTAA
65 AGATAAGAT-CTGTGGTTTTAA
* * * * * * **
31886865 TCCGCTCCACTGTAACTTTAGAGAGATAGGA-T-AGTGTCTTCGATCTGCTCCGCTGTAA-TCTC
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGAATG---T-GATCTGCTCTACTGTAACT-TC
* * * *
31886927 AGGGAGATAAGATCTCTGGCTTCAA
61 AGAGAGATAAGATCTGTGGTTTTAA
* * *
31886952 TCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTGAA
31886989 ATTCTTCGGT
Statistics
Matches: 567, Mismatches: 122, Indels: 79
0.74 0.16 0.10
Matches are distributed among these distances:
83 7 0.01
84 2 0.00
85 261 0.46
86 9 0.02
87 93 0.16
88 97 0.17
89 66 0.12
90 29 0.05
91 2 0.00
92 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (85 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGAATGTGATCTGCTCTACTGTAACTTCAGAGA
GATAAGATCTGTGGTTTTAA
Found at i:31886309 original size:129 final size:129
Alignment explanation
Indices: 31886079--31886543 Score: 691
Period size: 129 Copynumber: 3.6 Consensus size: 129
31886069 AAAAAGTCTG
* * * * * ** ** *
31886079 ATGCGATATGCTATATTGGAACTTCAGATAGATAAGATCCATCATTTTAATCCGCTTCACTGCAA
1 ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAA
* * *
31886144 CTTCAGGAAGATAGGATTAATTTTTTTCGTCTGCTCCACTGCAACTTCTAGGAGATAAGACTGA
66 CTTCAGGGAGATAGGATTGATTTCTTTCGTCTGCTCCACTGCAACTTCTAGGAGATAAGACTGA
31886208 ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAA
1 ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAA
* *
31886273 CTTCAGGGAGATAGGATTGATTTCTTTCGTCTGCTCCACTGTAACTT-TAAGGAGATAAGACTGG
66 CTTCAGGGAGATAGGATTGATTTCTTTCGTCTGCTCCACTGCAACTTCT-AGGAGATAAGACTGA
* * * **
31886337 ATGTGATCTGCTCTACTGTAACTTCAAAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTATAA
1 ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAA
* *
31886402 CTTCAGAGAGATAGGATTGATTTCTTTCGTCTGCTCCACTGCAACTTC-AGGGAGATAAGACTGT
66 CTTCAGGGAGATAGGATTGATTTCTTTCGTCTGCTCCACTGCAACTTCTA-GGAGATAAGACTGA
*
31886466 ATGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAA
1 ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAA
31886531 CTTCAGGGAGATA
66 CTTCAGGGAGATA
31886544 AGACTGTATG
Statistics
Matches: 305, Mismatches: 28, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
128 2 0.01
129 303 0.99
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (129 bp):
ATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAA
CTTCAGGGAGATAGGATTGATTTCTTTCGTCTGCTCCACTGCAACTTCTAGGAGATAAGACTGA
Found at i:31886412 original size:44 final size:44
Alignment explanation
Indices: 31886213--31886986 Score: 410
Period size: 44 Copynumber: 17.8 Consensus size: 44
31886203 ACTGAATGCG
*
31886213 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* * * * *
31886257 ATCCGCTCCACTGCAACTTCAGGGAGATAGGAT-TGAT-TTCTTTC
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTG-TGGT-TTTA
* * * * * *
31886301 GTCTGCTCCACTGTAACTTTA-AGGAGATAAGA-C--TGGATGTG
1 ATCTGCTCCACTGCAACTTCAGA-GAGATAAGATCTGTGGTTTTA
* * *
31886342 ATCTGCTCTACTGTAACTTCAAAGAGATAAGATCTGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* ** * * *
31886386 ATCCGCTCCACTATAACTTCAGAGAGATAGGAT-TGAT-TTCTTTC
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTG-TGGT-TTTA
* * * * *
31886430 GTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTGT--ATGTG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
*
31886471 ATCTGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* * * * *
31886515 ATCCGCTCCACTGCAACTTCAGGGAGATAAGA-CTGT--ATGTG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* * *
31886556 ATCTGCTCTACCGTAACTTCAGAGAGATAAGATCTGTGGTTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* * * *
31886600 ATCTGCTCCACTGCAACTTCAG-GAAGATAGGAT-TATCGGCTTCA
1 ATCTGCTCCACTGCAACTTCAGAG-AGATAAGATCTGT-GGTTTTA
* * * * ** **
31886644 ATCTGCTCCACTGTAACCTCAGGGAGATAAGATTTGTCATCTTCG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGT-TTTA
* * * * * *
31886689 ATCTGCCCCACTGCAACTTCAGGGGGTTAAGA-CT-TGATTACTCA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTT--TTA
* * *** *
31886733 GTCTGCTCCGCTGCAACTTCAGAGAGATAAGATCTGAAATTCTTCG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTT-TT-A
* * * * * * ***
31886779 GTCTACTCCACTGTAACCTCAGGGAGATAAGA-C-CTGG-TGCG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
* ** * * **
31886820 ATCTACTCTGCTGTAACTTCAAAGAGATAAGATCCT-TTATTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGAT-CTGTGGTTTTA
* * * * * **
31886864 ATCCGCTCCACTGTAACTTTAGAGAGATAGGAT-AGT-GTCTTCG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGT-TTTA
* * * * * *
31886907 ATCTGCTCCGCTGTAA-TCTCAGGGAGATAAGATCTCTGGCTTCA
1 ATCTGCTCCACTGCAACT-TCAGAGAGATAAGATCTGTGGTTTTA
* * * *
31886951 ATCTACTCCACTGTAACCTCAGGGAGATAAGATCTG
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTG
31886987 AAATTCTTCG
Statistics
Matches: 555, Mismatches: 137, Indels: 76
0.72 0.18 0.10
Matches are distributed among these distances:
41 117 0.21
42 13 0.02
43 49 0.09
44 307 0.55
45 39 0.07
46 30 0.05
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.30
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTA
Found at i:31886604 original size:129 final size:128
Alignment explanation
Indices: 31886098--31887637 Score: 645
Period size: 129 Copynumber: 11.8 Consensus size: 128
31886088 GCTATATTGG
* ** ** * * * *
31886098 AACTTCAGATAGATAAGATCCATCATTTTAATCCGCTTCACTGCAACTTCAGGAAGATAGGATTA
1 AACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAAGA-T-
* * * * *** *
31886163 ATTTTTTTCG-TCTGCTCCACTGCAACTTCTAG-GAGATAAGAC-TGAATGCGATCTGCTCTACT
64 -TGTATTTCGATCTGCTCCACTGTAACTTC-AGAGAGATAAGACTTGATTTTAATCTGCTCCACT
31886225 GC
127 GC
* *
31886227 AACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTG
1 AACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAAGATTG
* * * * * *
31886292 ATTTCTTTCG-TCTGCTCCACTGTAACTTTA-AGGAGATAAGACTGGA-TGTGATCTGCTCTACT
66 ---TATTTCGATCTGCTCCACTGTAACTTCAGA-GAGATAAGACTTGATTTTAATCTGCTCCACT
*
31886354 GT
127 GC
* * * *
31886356 AACTTCAAAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTATAACTTCAGAGAGATAGGATTG
1 AACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAAGATTG
* * * * * *
31886421 ATTTCTTTCG-TCTGCTCCACTGCAACTTCAGGGAGATAAGAC-TG-TATGTGATCTGCTCTACT
66 ---TATTTCGATCTGCTCCACTGTAACTTCAGAGAGATAAGACTTGAT-TTTAATCTGCTCCACT
31886483 GC
127 GC
* *
31886485 AACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGACTG
1 AACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAAGATTG
* * * *
31886550 TATGT-GATCTGCTCTACCGTAACTTCAGAGAGATAAGATCTGTGGTTTTAATCTGCTCCACTGC
66 TATTTCGATCTGCTCCACTGTAACTTCAGAGAGATAAGA-CT-TGATTTTAATCTGCTCCACTGC
* * * * * *
31886614 AACTTCAG-GAAGATAGGAT-TATCGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGAT
1 AACTTCAGAG-AGATAAGATCTGT-GGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAAGA-
* * * * * * *
31886677 TTGTCATCTTCGATCTGCCCCACTGCAACTTCAGGGGGTTAAGACTTGATTACTCAGTCTGCTCC
63 TTGT-AT-TTCGATCTGCTCCACTGTAACTTCAGAGAGATAAGACTTGATT--TTAATCTGCTCC
*
31886742 GCTGC
124 ACTGC
*** ** ** *
31886747 AACTTCAGAGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGAC
1 AACTTCAGAGAGATAAGATCTGTGGTT-TT-AATCCGCTCCACTGTAACTTCAGGGAGATAAGA-
* * * * ** * * *
31886812 CTG--GTGCGATCTACTCTGCTGTAACTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCAC
63 TTGTATTTCGATCTGCTCCACTGTAACTTCAGAGAGATAAGA--CTTGATTTTAATCTGCTCCAC
*
31886875 TGT
126 TGC
* * * ** * *
31886878 AACTTTAGAGAGATAGGAT-AGT-GTCTTCGATCTGCTCCGCTGTAA-TCTCAGGGAGATAAGAT
1 AACTTCAGAGAGATAAGATCTGTGGT-TTTAATCCGCTCCACTGTAACT-TCAGGGAGATAAGAT
* ** * * * * **
31886940 CTCTGGCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGA-TCTGAAATTCTTCGGTCTAG-
64 -TGT-ATTTCGATCTGCTCCACTGTAACTTCAGAGAGATAAGACT-TG--ATT-TT-AATCT-GC
*
31887003 TCCACTGT
121 TCCACTGC
* * * ** ** * *
31887011 AACCTCAGGGAGATAAGACCTGATGCG-----ATCTACTCTGCTGTAACCTCAGAGAGATAAGAT
1 AACTTCAGAGAGATAAGATCTG-TG-GTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAAGAT
* ** * * * * **
31887071 CCTTTATTTTTAATCCGCTCCACTGTAACTTTAGGGAGATAGGA-TAGTG-TCTTCGATCTGCTC
64 --TGTA-TTTCGATCTGCTCCACTGTAACTTCAGAGAGATAAGACT--TGAT-TTTAATCTGCTC
* *
31887134 CGCTGT
123 CACTGC
* * * * * *
31887140 AA-TCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATC
1 AACT-TCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAAGAT-
* * * * * * *** * **
31887204 TGAAATTCTTCGGTCTACTCCACTATAACCTCAG-GAAGATAAGACCTGA-TGCGATCTACTCTG
64 TG-TA-T-TTCGATCTGCTCCACTGTAACTTCAGAG-AGATAAGACTTGATTTTAATCTGCTCCA
*
31887267 CTGT
125 CTGC
* ** * *
31887271 AACCTCAGAGAGATAAGATCCT-TTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATA
1 AACTTCAGAGAGATAAGAT-CTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAAGATT
* * * * ** *
31887335 GTGTCTTCGATATGCTCCGCTGTAA-TCTCAGTGAGATAAGATCTCTGGCTTCAATCTGCTCCAC
65 GTAT-TTCGATCTGCTCCACTGTAACT-TCAGAGAGATAAGA-CT-TGATTTTAATCTGCTCCAC
*
31887399 TGT
126 TGC
* *** ** ** *
31887402 AACCTCA-AGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGA
1 AACTTCAGA-GAGATAAGATCTGTGGTT-TT-AATCCGCTCCACTGTAACTTCAGGGAGATAAGA
* * * ** * *
31887466 CCTG-A-TGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTAAT-TCGCTCC
63 -TTGTATTTCGATCTGCTCCACTGTAACTTCAGAGAGATAAGA--CTTGATTTTAATCT-GCTCC
*
31887528 ACTGT
124 ACTGC
* * * * ** * *
31887533 GACTTCAGGGAGATAGGAT-AGT-GTCTTCGATCTGCTCCGCTGTAA-TATCAGGGAGATAAGAT
1 AACTTCAGAGAGATAAGATCTGTGGT-TTTAATCCGCTCCACTGTAACT-TCAGGGAGATAAGAT
* ** * * * *
31887595 CTCTGGCTTCAATCTGTTCCACTGTAACCTCAGGGAGATAAGA
64 -TGT-ATTTCGATCTGCTCCACTGTAACTTCAGAGAGATAAGA
31887638 TCTGAAATTC
Statistics
Matches: 1103, Mismatches: 225, Indels: 164
0.74 0.15 0.11
Matches are distributed among these distances:
125 1 0.00
126 31 0.03
127 2 0.00
128 97 0.09
129 382 0.35
130 19 0.02
131 310 0.28
132 80 0.07
133 141 0.13
134 6 0.01
135 33 0.03
137 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (128 bp):
AACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAAGATTG
TATTTCGATCTGCTCCACTGTAACTTCAGAGAGATAAGACTTGATTTTAATCTGCTCCACTGC
Found at i:31886882 original size:131 final size:131
Alignment explanation
Indices: 31886568--31887639 Score: 333
Period size: 131 Copynumber: 8.2 Consensus size: 131
31886558 CTGCTCTACC
* * ** * *
31886568 GTAACTTCAGAGAGATAAGAT-CTGTGGTTTTAATCTGCTCCACTGCAACTTCAG-GAAGATAGG
1 GTAACCTCAAAGAGATAAGATCCT-TTATTTTAATCCGCTCCACTGCAACTTCAGAG-AGATAAG
* * * * * * ** * * * *
31886631 ATTATCGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATTTGTCATCTTCGATCTGCC
64 ATAAT-GTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTCT-GGCTGCAATCTACT
31886696 CCACT
127 CCACT
* * ** * * * * * * *
31886701 GCAACTTCAGGGGGTTAAGA--CTTGATTACTCAGTCTGCTCCGCTGCAACTTCAGAGAGATAAG
1 GTAACCTCAAAGAGATAAGATCCTTTATT--TTAATCCGCTCCACTGCAACTTCAGAGAGATAAG
* *
31886764 ATCTGAAAT-TCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGA-C-CTGG-TGCGATCTA
64 A--T--AATGTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTCTGGCTGCAATCTA
**
31886825 CTCTGCT
125 CTCCACT
* * * *
31886832 GTAACTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTTAGAGAGATAGGAT
1 GTAACCTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGCAACTTCAGAGAGATAAGAT
* * * * *
31886897 AGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTACTCCAC
66 AATGTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTCTGGCTGCAATCTACTCCAC
31886962 T
131 T
** ** ** * * * *
31886963 GTAACCTCAGGGAGATAAGAT-CTGAAATTCTTCGGTCTAG-TCCACTGTAACCTCAGGGAGATA
1 GTAACCTCAAAGAGATAAGATCCT-TTATT-TT-AATC-CGCTCCACTGCAACTTCAGAGAGATA
** * * ** * * *** ** **
31887026 AGA-CCTG-ATGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTTAATCCGC
62 AGATAATGTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGAT-CTCTGGCTGCAATCTAC
31887089 TCCACT
126 TCCACT
* * ** * ** * * ** * * * *
31887095 GTAACTTTAGGGAGATAGGATAGTGT-CTTCGATCTGCTCCGCTGTAA-TCTCAGGGAGATAAGA
1 GTAACCTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGCAACT-TCAGAGAGATAAGA
** * * * * * * **
31887158 TCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT-TCTTCGGTCTAC
65 T-AATGTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCT---CTGGCTGCAATCTAC
31887222 TCCACT
126 TCCACT
* * * *** ** ** * *
31887228 ATAACCTC-AGGAAGATAAGA-CC-TGA-TGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGA
1 GTAACCTCAAAG-AGATAAGATCCTTTATTTTAATCCGCTCCACTGCAACTTCAGAGAGATAAGA
** * * ** ** * * ** * * * * *
31887289 TCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGAT-AGTGTCTTCGATATGCTCC
65 TAATGT-CTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTCTGGCTGCAATCTACTCC
*
31887353 GCT
129 ACT
* ** *** * * * *
31887356 GTAATCTCAGTGAGATAAGAT-CTCTGGCTTCAATCTGCTCCACTGTAACCTCA-AGGAGATAAG
1 GTAACCTCAAAGAGATAAGATCCT-TTATTTTAATCCGCTCCACTGCAACTTCAGA-GAGATAAG
* * *
31887419 ATCTGAAAT-TCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGA-C-CT-GATGCGATCTA
64 A--T--AATGTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTCTGGCTGCAATCTA
**
31887480 CTCTGCT
125 CTCCACT
* * ** * *
31887487 GTAACCTCAGAGAGATAAGATCCTTTATTTTAATTCGCTCCACTGTGACTTCAGGGAGATAGGAT
1 GTAACCTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGCAACTTCAGAGAGATAAGAT
* * * ** * **
31887552 AGTGTCTTCGATCTGCTCCGCTGTAATATCAGGGAGATAAGATCTCTGGCTTCAATCTGTTCCAC
66 AATGTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTCTGGCTGCAATCTACTCCAC
31887617 T
131 T
**
31887618 GTAACCTCAGGGAGATAAGATC
1 GTAACCTCAAAGAGATAAGATC
31887640 TGAAATTCTT
Statistics
Matches: 710, Mismatches: 180, Indels: 100
0.72 0.18 0.10
Matches are distributed among these distances:
127 5 0.01
128 97 0.14
129 31 0.04
130 14 0.02
131 314 0.44
132 76 0.11
133 131 0.18
134 4 0.01
135 36 0.05
137 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (131 bp):
GTAACCTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGCAACTTCAGAGAGATAAGAT
AATGTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCTCTGGCTGCAATCTACTCCAC
T
Found at i:31886907 original size:218 final size:218
Alignment explanation
Indices: 31886734--31887815 Score: 1876
Period size: 218 Copynumber: 5.0 Consensus size: 218
31886724 GATTACTCAG
* * * *
31886734 TCTGCTCCGCTGCAACTTCAGAGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
* * *
31886799 AGGGAGATAAGACCTGGTGCGATCTACTCTGCTGTAACTTCAAAGAGATAAGATCCTTTATTTTA
66 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTA
* *
31886864 ATCCGCTCCACTGTAACTTTAGAGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAG
131 ATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAG
31886929 GGAGATAAGATCTCTGGCTTCAA
196 GGAGATAAGATCTCTGGCTTCAA
* *
31886952 TCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTAGTCCACTGTAACCTC
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
31887017 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTT
66 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTA-TTTT
*
31887082 AATCCGCTCCACTGTAACTTTAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCA
130 AATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCA
31887147 GGGAGATAAGATCTCTGGCTTCAA
195 GGGAGATAAGATCTCTGGCTTCAA
*
31887171 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTATAACCTC
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
*
31887236 AGGAAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTA
66 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTA
*
31887301 ATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATATGCTCCGCTGTAATCTCAG
131 ATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAG
*
31887366 TGAGATAAGATCTCTGGCTTCAA
196 GGAGATAAGATCTCTGGCTTCAA
*
31887389 TCTGCTCCACTGTAACCTCAAGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
31887454 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTA
66 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTA
* * *
31887519 ATTCGCTCCACTGTGACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATATCAG
131 ATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAG
31887584 GGAGATAAGATCTCTGGCTTCAA
196 GGAGATAAGATCTCTGGCTTCAA
*
31887607 TCTGTTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
* * *
31887672 AGGGAGATACGACCTGATGCGATCTACTCTGCTGTAACTTTAGAGAGATAAGATCCTTTATTTTA
66 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTA
* * * * *
31887737 ATCCGCTCCACTGTAACTTCAGGGAGATAGGATTACTATCTTCAATCTACTCCGCTGTAATTTCA
131 ATCCGCTCCACTGTAACTTCAGGGAGATAGGA-TAGTGTCTTCGATCTGCTCCGCTGTAATCTCA
*
31887802 GGGAGATAATATCT
195 GGGAGATAAGATCT
31887816 GAAATTTTTC
Statistics
Matches: 824, Mismatches: 38, Indels: 3
0.95 0.04 0.00
Matches are distributed among these distances:
218 571 0.69
219 253 0.31
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (218 bp):
TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTA
ATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAG
GGAGATAAGATCTCTGGCTTCAA
Found at i:31886964 original size:87 final size:87
Alignment explanation
Indices: 31886435--31887985 Score: 562
Period size: 87 Copynumber: 17.8 Consensus size: 87
31886425 CTTTCGTCTG
* * * * * * *
31886435 CTCCACTGCAACTTCAGGGAGATAAG--ACTGTATGT-GATCTGCTCTACTGCAACTTCAGAGAG
1 CTCCACTGTAACCTCAGGGAGATAAGATACTGTCT-TCGATCTGCTCCACTGTAACCTCAGGGAG
* * * **
31886497 ATAAGATCTGTGGTTTTAATCCG
65 ATAAGATCTCTGGCTTCAATCTA
* * * * * * *
31886520 CTCCACTGCAACTTCAGGGAGATAAG--ACTGTATGT-GATCTGCTCTACCGTAACTTCAGAGAG
1 CTCCACTGTAACCTCAGGGAGATAAGATACTGTCT-TCGATCTGCTCCACTGTAACCTCAGGGAG
* * * *
31886582 ATAAGATCTGTGGTTTTAATCTG
65 ATAAGATCTCTGGCTTCAATCTA
* * * * * *
31886605 CTCCACTGCAACTTCAGGAAGATAGGATTA-TCGGCTTCAATCTGCTCCACTGTAACCTCAGGGA
1 CTCCACTGTAACCTCAGGGAGATAAGA-TACT-GTCTTCGATCTGCTCCACTGTAACCTCAGGGA
* * ** * *
31886669 GATAAGATTTGTCATCTTCGATCTG
64 GATAAGATCTCT-GGCTTCAATCTA
* * * * * * * *
31886694 CCCCACTGCAACTTCAGGGGGTTAAG--ACTTGAT-TACTC-AGTCTGCTCCGCTGCAACTTCAG
1 CTCCACTGTAACCTCAGGGAGATAAGATAC-TG-TCT--TCGA-TCTGCTCCACTGTAACCTCAG
* * * **
31886755 AGAGATAAGATCTGAAAT-TCTTCGGTCTA
61 GGAGATAAGATCT---CTGGCTTCAATCTA
* * * * ** * **
31886784 CTCCACTGTAACCTCAGGGAGATAAGA-CCTG-GTGCGATCTACTCTGCTGTAACTTCAAAGAGA
1 CTCCACTGTAACCTCAGGGAGATAAGATACTGTCTTCGATCTGCTCCACTGTAACCTCAGGGAGA
*** * **
31886847 TAAGATC-CTTTATTTTAATCCG
66 TAAGATCTC-TGGCTTCAATCTA
* * * * * * *
31886869 CTCCACTGTAACTTTAGAGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGA
1 CTCCACTGTAACCTCAGGGAGATAAGATACTGTCTTCGATCTGCTCCACTGTAACCTCAGGGAGA
31886934 TAAGATCTCTGGCTTCAATCTA
66 TAAGATCTCTGGCTTCAATCTA
*
31886956 CTCCACTGTAACCTCAGGGAGATAAGAT-CTGAAATTCTTCGGTCTAG-TCCACTGTAACCTCAG
1 CTCCACTGTAACCTCAGGGAGATAAGATACTG----TCTTCGATCT-GCTCCACTGTAACCTCAG
* * *
31887019 GGAGATAAGA-C-CT-GATGCGATCTA
61 GGAGATAAGATCTCTGGCTTCAATCTA
** * * * * ** * * *
31887043 CTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTTAATCCGCTCCACTGTAACTTTAGGGA
1 CTCCACTGTAACCTCAGGGAGATAAGATAC--TGTCTTCGATCTGCTCCACTGTAACCTCAGGGA
* ** * * *
31887108 GATAGGAT-AGTGTCTTCGATCTG
64 GATAAGATCTCTGGCTTCAATCTA
* * * * *
31887131 CTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAG
1 CTCCACTGTAACCTCAGGGAGATAAGAT-ACTGTCTTCGATCTGCTCCACTGTAACCTCAGGGAG
* * **
31887196 ATAAGATCTGAAAT-TCTTCGGTCTA
65 ATAAGATCT---CTGGCTTCAATCTA
* * * * * * ** *
31887221 CTCCACTATAACCTCAGGAAGATAAGA-CCTG-ATGCGATCTACTCTGCTGTAACCTCAGAGAGA
1 CTCCACTGTAACCTCAGGGAGATAAGATACTGTCTTCGATCTGCTCCACTGTAACCTCAGGGAGA
*** * **
31887284 TAAGATC-CTTTATTTTAATCCG
66 TAAGATCTC-TGGCTTCAATCTA
* * * * * * *
31887306 CTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATATGCTCCGCTGTAATCTCAGTGAGA
1 CTCCACTGTAACCTCAGGGAGATAAGATACTGTCTTCGATCTGCTCCACTGTAACCTCAGGGAGA
*
31887371 TAAGATCTCTGGCTTCAATCTG
66 TAAGATCTCTGGCTTCAATCTA
* * *
31887393 CTCCACTGTAACCTCAAGGAGATAAGAT-CTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGG
1 CTCCACTGTAACCTCAGGGAGATAAGATACTG----TCTTCGATCTGCTCCACTGTAACCTCAGG
* * *
31887457 GAGATAAGA-C-CT-GATGCGATCTA
62 GAGATAAGATCTCTGGCTTCAATCTA
** * * * * ** * *
31887480 CTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTAAT-TCGCTCCACTGTGACTTCAGGGA
1 CTCCACTGTAACCTCAGGGAGATAAGATACTGT-CTTCGATCT-GCTCCACTGTAACCTCAGGGA
* ** * * *
31887544 GATAGGAT-AGTGTCTTCGATCTG
64 GATAAGATCTCTGGCTTCAATCTA
* ** * * * *
31887567 CTCCGCTGTAATATCAGGGAGATAAGATCTCTGGCTTCAATCTGTTCCACTGTAACCTCAGGGAG
1 CTCCACTGTAACCTCAGGGAGATAAGAT-ACTGTCTTCGATCTGCTCCACTGTAACCTCAGGGAG
* * **
31887632 ATAAGATCTGAAAT-TCTTCGGTCTA
65 ATAAGATCT---CTGGCTTCAATCTA
* * * * * ** * * *
31887657 CTCCACTGTAACCTCAGGGAGATACGA-CCTG-ATGCGATCTACTCTGCTGTAACTTTAGAGAGA
1 CTCCACTGTAACCTCAGGGAGATAAGATACTGTCTTCGATCTGCTCCACTGTAACCTCAGGGAGA
*** * **
31887720 TAAGATC-CTTTATTTTAATCCG
66 TAAGATCTC-TGGCTTCAATCTA
* * * * * * **
31887742 CTCCACTGTAACTTCAGGGAGATAGGATTACTATCTTCAATCTACTCCGCTGTAATTTCAGGGAG
1 CTCCACTGTAACCTCAGGGAGATAAGA-TACTGTCTTCGATCTGCTCCACTGTAACCTCAGGGAG
* * ** ** *
31887807 ATAATATCTGAAAT-TTTTCGGTCTG
65 ATAAGATCT---CTGGCTTCAATCTA
* * * * * * * *
31887832 CCCCACTGTAATCTCAGGGAGATAAGA-CCTG-ATGCGATCTACTCTACTGTAA-CTCCAGAGAG
1 CTCCACTGTAACCTCAGGGAGATAAGATACTGTCTTCGATCTGCTCCACTGTAACCT-CAGGGAG
**
31887894 ATAAGATCT-T---TT-AATCCG
65 ATAAGATCTCTGGCTTCAATCTA
* * * * * * *
31887912 CTCCACTGTAATCTAAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAG
1 CTCCACTGTAACCTCAGGGAGATAAGA-TACTGTCTTCGATCTGCTCCACTGTAACCTCAGGGAG
*
31887977 ATAAAATCT
65 ATAAGATCT
31887986 GTAATTCTTC
Statistics
Matches: 1118, Mismatches: 273, Indels: 152
0.72 0.18 0.10
Matches are distributed among these distances:
80 27 0.02
81 2 0.00
82 2 0.00
83 30 0.03
84 7 0.01
85 217 0.19
86 39 0.03
87 413 0.37
88 121 0.11
89 63 0.06
90 191 0.17
91 5 0.00
92 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (87 bp):
CTCCACTGTAACCTCAGGGAGATAAGATACTGTCTTCGATCTGCTCCACTGTAACCTCAGGGAGA
TAAGATCTCTGGCTTCAATCTA
Found at i:31887497 original size:437 final size:436
Alignment explanation
Indices: 31886734--31887815 Score: 1885
Period size: 437 Copynumber: 2.5 Consensus size: 436
31886724 GATTACTCAG
* * * *
31886734 TCTGCTCCGCTGCAACTTCAGAGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
* *
31886799 AGGGAGATAAGACCTGGTGCGATCTACTCTGCTGTAACTTCAAAGAGATAAGATCCTTTATTTTA
66 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
* *
31886864 ATCCGCTCCACTGTAACTTTAGAGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAG
131 ATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAG
*
31886929 GGAGATAAGATCTCTGGCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCT
196 GGAGATAAGATCTCTGGCTTCAATCTACTCCACTGTAACCTCAAGGAGATAAGATCTGAAATTCT
*
31886994 TCGGTCTAGTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCA
261 TCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCA
*
31887059 GAGAGATAAGATCCTTTATTTTTAATCCGCTCCACTGTAACTTTAGGGAGATAGGATAGTGTCTT
326 GAGAGATAAGATCCTTTA-TTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTT
*
31887124 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAA
390 CGATCTGCTCCGCTGTAATATCAGGGAGATAAGATCTCTGGCTTCAA
*
31887171 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTATAACCTC
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
* *
31887236 AGGAAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTA
66 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
*
31887301 ATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATATGCTCCGCTGTAATCTCAG
131 ATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAG
* *
31887366 TGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAAGGAGATAAGATCTGAAATTCT
196 GGAGATAAGATCTCTGGCTTCAATCTACTCCACTGTAACCTCAAGGAGATAAGATCTGAAATTCT
31887431 TCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCA
261 TCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCA
* *
31887496 GAGAGATAAGATCCTTTATTTTAATTCGCTCCACTGTGACTTCAGGGAGATAGGATAGTGTCTTC
326 GAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTC
31887561 GATCTGCTCCGCTGTAATATCAGGGAGATAAGATCTCTGGCTTCAA
391 GATCTGCTCCGCTGTAATATCAGGGAGATAAGATCTCTGGCTTCAA
*
31887607 TCTGTTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
* *
31887672 AGGGAGATACGACCTGATGCGATCTACTCTGCTGTAACTTTAGAGAGATAAGATCCTTTATTTTA
66 AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
* * * * *
31887737 ATCCGCTCCACTGTAACTTCAGGGAGATAGGATTACTATCTTCAATCTACTCCGCTGTAATTTCA
131 ATCCGCTCCACTGTAACTTCAGGGAGATAGGA-TAGTGTCTTCGATCTGCTCCGCTGTAATCTCA
*
31887802 GGGAGATAATATCT
195 GGGAGATAAGATCT
31887816 GAAATTTTTC
Statistics
Matches: 610, Mismatches: 34, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
436 245 0.40
437 365 0.60
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (436 bp):
TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
AGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTTATTTTA
ATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAG
GGAGATAAGATCTCTGGCTTCAATCTACTCCACTGTAACCTCAAGGAGATAAGATCTGAAATTCT
TCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTGCTGTAACCTCA
GAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTC
GATCTGCTCCGCTGTAATATCAGGGAGATAAGATCTCTGGCTTCAA
Found at i:31887695 original size:131 final size:130
Alignment explanation
Indices: 31886903--31887985 Score: 565
Period size: 131 Copynumber: 8.3 Consensus size: 130
31886893 GGATAGTGTC
31886903 TTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTACTCCACTGTAAC
1 TTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTACTCCACTGTAAC
* *
31886968 CTCAGGGAGATAAGATCTGAAATTCTTCGGTCTAGTCCACTGTAACCTCAGGGAGATAAGA-CCT
66 CTCAGGGAGATAAGATCT--AATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCCT
31887032 GA
129 GA
* * * * * * *** * **
31887034 TGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTTAATCCGCTCCACTGTAA
1 TTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT-CTCTGGCTTCAATCTACTCCACTGTAA
* * * * * * *
31887099 CTTTAGGGAGATAGGA--TAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTC
65 CCTCAGGGAGATAAGATCTAAT-TCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATC-C
*
31887162 TGGC
128 T-GA
* * * * * ** *
31887166 TTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT-TCTTCGGTCTACTCCACTAT
1 TTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT---CTGGCTTCAATCTACTCCACTGT
* * * * ** *
31887230 AACCTCAGGAAGATAAGACCTGA---TGCGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCC
63 AACCTCAGGGAGATAAGATCTAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCC
*
31887292 TTTA
128 -TGA
** * * * ** * * * * *
31887296 TTTTAATCCGCTCCACTGTAA-CTTCAGGGAGATAGGAT-AGTGTCTTCGATATGCTCCGCTGTA
1 -TTCGATCTGCTCCGCTGTAATC-TCAGGGAGATAAGATCTCTGGCTTCAATCTACTCCACTGTA
* * * * * * *
31887359 ATCTCAGTGAGATAAGATCT-CTGGCTTCAATCTGCTCCACTGTAACCTCAAGGAGATAAGAT-C
64 ACCTCAGGGAGATAAGATCTAAT-TCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCC
31887422 TGAAA
128 TG--A
* * * * * * * **
31887427 TTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGA-C-CT-GATGCGATCTACTCTGCTGT
1 ---TTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTACTCCACTGT
* * * * * * *
31887489 AACCTCAGAGAGATAAGATCCTTTATT-TT-AAT-TCGCTCCACTGTGACTTCAGGGAGATAGGA
63 AACCTCAGGGAGATAAGAT-C-TAATTCTTCGATCT-ACTCCACTGTAACCTCAGGGAGATAAGA
** *
31887551 TAGTGTC
125 TCCTG-A
* **
31887558 TTCGATCTGCTCCGCTGTAATATCAGGGAGATAAGATCTCTGGCTTCAATCTGTTCCACTGTAAC
1 TTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTACTCCACTGTAAC
* *
31887623 CTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATACGA-CCT
66 CTCAGGGAGATAAGATCT--AATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCCT
31887687 GA
129 GA
* * * * * *** * **
31887689 TGCGATCTACTCTGCTGTAA-CTTTAGAGAGATAAGATC-CTTTATTTTAATCCGCTCCACTGTA
1 TTCGATCTGCTCCGCTGTAATC-TCAGGGAGATAAGATCTC-TGGCTTCAATCTACTCCACTGTA
* * * * * ** *
31887752 ACTTCAGGGAGATAGGAT-TACTATCTTCAATCTACTCCGCTGTAATTTCAGGGAGATAATAT-C
64 ACCTCAGGGAGATAAGATCTAAT-TCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCC
31887815 TGAAA
128 TG--A
* * * * * * *
31887820 TTTTTCGGTCTGCCCCACTGTAATCTCAGGGAGATAAGA-C-CT-GATGCGATCTACTCTACTGT
1 ---TTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTACTCCACTGT
* * ** * * *
31887882 AA-CTCCAGAGAGATAAGATC---TT-TT-AATCCGCTCCACTGTAATCTAAGGGAGATAGGATT
63 AACCT-CAGGGAGATAAGATCTAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGA-T
*
31887941 ACT-A
126 CCTGA
* *
31887945 TCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAAATCT
1 --TTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT
31887986 GTAATTCTTC
Statistics
Matches: 725, Mismatches: 174, Indels: 111
0.72 0.17 0.11
Matches are distributed among these distances:
124 32 0.04
125 2 0.00
126 26 0.04
127 4 0.01
128 70 0.10
129 71 0.10
130 12 0.02
131 317 0.44
132 76 0.10
133 83 0.11
134 30 0.04
135 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (130 bp):
TTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTACTCCACTGTAAC
CTCAGGGAGATAAGATCTAATTCTTCGATCTACTCCACTGTAACCTCAGGGAGATAAGATCCTGA
Found at i:31887934 original size:39 final size:42
Alignment explanation
Indices: 31887736--31887985 Score: 109
Period size: 44 Copynumber: 5.9 Consensus size: 42
31887726 CCTTTATTTT
* *
31887736 AATCCGCTCCACTGTAA-CTTCAGGGAGATAGGATTACTATCTTC
1 AATCCGCTCCACTGTAATC-TAAGGGAGATAAGA-T-CTATCTTC
** * * * * *
31887780 AATCTACTCCGCTGTAATTTCAGGGAGATAATATCTGAAATTTTTC
1 AATCCGCTCCACTGTAATCTAAGGGAGATAAGATCT---A-TCTTC
** * * * * *
31887826 GGTCTGCCCCACTGTAATCTCAGGGAGATAAGACCTGA--TGC
1 AATCCGCTCCACTGTAATCTAAGGGAGATAAGATCT-ATCTTC
* ** * * *
31887867 GATCTACTCTACTGTAA-CTCCAGAGAGATAAGATCT-T-TT-
1 AATCCGCTCCACTGTAATCT-AAGGGAGATAAGATCTATCTTC
*
31887906 AATCCGCTCCACTGTAATCTAAGGGAGATAGGATTACTATCTTC
1 AATCCGCTCCACTGTAATCTAAGGGAGATAAGA-T-CTATCTTC
* * * *
31887950 AATCTGCTCCGCTGTAATCTCAGGGAGATAAAATCT
1 AATCCGCTCCACTGTAATCTAAGGGAGATAAGATCT
31887986 GTAATTCTTC
Statistics
Matches: 157, Mismatches: 36, Indels: 28
0.71 0.16 0.13
Matches are distributed among these distances:
39 23 0.15
40 6 0.04
41 31 0.20
42 5 0.03
43 4 0.03
44 55 0.35
45 1 0.01
46 32 0.20
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (42 bp):
AATCCGCTCCACTGTAATCTAAGGGAGATAAGATCTATCTTC
Found at i:31887999 original size:170 final size:172
Alignment explanation
Indices: 31887566--31888032 Score: 636
Period size: 175 Copynumber: 2.7 Consensus size: 172
31887556 TCTTCGATCT
* * * ** * * *
31887566 GCTCCGCTGTAATATCAGGGAGATAAGATCT-CTGGCTTCAATCTGTTCCACTGTAACCTCAGGG
1 GCTCCACTGTAATCTCAGGGAGATAGGAT-TACTATCTTCAATCTGCTCCGCTGTAATCTCAGGG
* * * *
31887630 AGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATACGACCTGATGCGAT
65 AGATAAAATCTGAAATTCTTCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGAT
* **
31887695 CTACTCTGCTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCC
130 CTACTCTACTGTAACTCCAGAGAGATAAGATCC--T-TTTTAATCC
* *
31887741 GCTCCACTGTAA-CTTCAGGGAGATAGGATTACTATCTTCAATCTACTCCGCTGTAATTTCAGGG
1 GCTCCACTGTAATC-TCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGG
* * *
31887805 AGATAATATCTGAAATTTTTCGGTCTGCCCCACTGTAATCTCAGGGAGATAAGACCTGATGCGAT
65 AGATAAAATCTGAAATTCTTCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGAT
31887870 CTACTCTACTGTAACTCCAGAGAGATAAGAT-C-TTTTAATCC
130 CTACTCTACTGTAACTCCAGAGAGATAAGATCCTTTTTAATCC
*
31887911 GCTCCACTGTAATCTAAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGA
1 GCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGA
* * * *
31887976 GATAAAATCTGTAATTCTTCGGTCTGTTCCACCGTAATCTCAGGGAAATAAGACCTG
66 GATAAAATCTGAAATTCTTCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTG
31888033 TATAATGAAC
Statistics
Matches: 260, Mismatches: 29, Indels: 11
0.87 0.10 0.04
Matches are distributed among these distances:
170 119 0.46
171 1 0.00
174 2 0.01
175 138 0.53
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (172 bp):
GCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGA
GATAAAATCTGAAATTCTTCGGTCTGCTCCACTGTAATCTCAGGGAGATAAGACCTGATGCGATC
TACTCTACTGTAACTCCAGAGAGATAAGATCCTTTTTAATCC
Found at i:31889248 original size:6 final size:6
Alignment explanation
Indices: 31889239--31889289 Score: 52
Period size: 6 Copynumber: 8.3 Consensus size: 6
31889229 GCCTTTCCAT
*
31889239 TTTTCA TTTTTCA TTTTCA TTTTTCA TTCTCA TTTTTCA TTTT-- TTTTCA
1 TTTTCA -TTTTCA TTTTCA -TTTTCA TTTTCA -TTTTCA TTTTCA TTTTCA
31889288 TT
1 TT
31889290 CTCTTTTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
4 4 0.11
6 17 0.45
7 17 0.45
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTCA
Found at i:31889248 original size:7 final size:7
Alignment explanation
Indices: 31889236--31889282 Score: 71
Period size: 7 Copynumber: 7.0 Consensus size: 7
31889226 TTAGCCTTTC
31889236 CATTTTT
1 CATTTTT
31889243 CATTTTT
1 CATTTTT
31889250 CA-TTTT
1 CATTTTT
31889256 CATTTTT
1 CATTTTT
*
31889263 CA-TTCT
1 CATTTTT
31889269 CATTTTT
1 CATTTTT
31889276 CATTTTT
1 CATTTTT
31889283 TTTCATTCTC
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
6 11 0.31
7 25 0.69
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (7 bp):
CATTTTT
Found at i:31889255 original size:13 final size:13
Alignment explanation
Indices: 31889239--31889281 Score: 77
Period size: 13 Copynumber: 3.3 Consensus size: 13
31889229 GCCTTTCCAT
31889239 TTTTCATTTTTCA
1 TTTTCATTTTTCA
31889252 TTTTCATTTTTCA
1 TTTTCATTTTTCA
*
31889265 TTCTCATTTTTCA
1 TTTTCATTTTTCA
31889278 TTTT
1 TTTT
31889282 TTTTCATTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTCATTTTTCA
Found at i:31889259 original size:20 final size:20
Alignment explanation
Indices: 31889236--31889282 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
31889226 TTAGCCTTTC
*
31889236 CATTTTTCATTTTTCA-TTTT
1 CATTTTTCA-TTCTCATTTTT
31889256 CATTTTTCATTCTCATTTTT
1 CATTTTTCATTCTCATTTTT
31889276 CATTTTT
1 CATTTTT
31889283 TTTCATTCTC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (20 bp):
CATTTTTCATTCTCATTTTT
Found at i:31889298 original size:13 final size:13
Alignment explanation
Indices: 31889242--31889297 Score: 75
Period size: 13 Copynumber: 4.6 Consensus size: 13
31889232 TTTCCATTTT
*
31889242 TCATTTTTCATTT
1 TCATTTTTCATTC
31889255 TCATTTTTCATTC
1 TCATTTTTCATTC
31889268 TCATTTTTCATT-
1 TCATTTTTCATTC
31889280 T--TTTTTCATTC
1 TCATTTTTCATTC
31889291 TC-TTTTT
1 TCATTTTT
31889298 TTTTTTACTC
Statistics
Matches: 40, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
10 9 0.22
11 1 0.03
12 6 0.15
13 24 0.60
ACGTcount: A:0.12, C:0.18, G:0.00, T:0.70
Consensus pattern (13 bp):
TCATTTTTCATTC
Found at i:31890125 original size:24 final size:24
Alignment explanation
Indices: 31890096--31890142 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
31890086 TGACCTCTCC
*
31890096 TTTTTTCTTTTTCTTCTTTTTTTGA
1 TTTTTT-TTATTCTTCTTTTTTTGA
31890121 TTTTTTTTATTCTTCTTTTTTT
1 TTTTTTTTATTCTTCTTTTTTT
31890143 TTCCTATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 15 0.71
25 6 0.29
ACGTcount: A:0.04, C:0.11, G:0.02, T:0.83
Consensus pattern (24 bp):
TTTTTTTTATTCTTCTTTTTTTGA
Found at i:31893854 original size:109 final size:109
Alignment explanation
Indices: 31893695--31893972 Score: 441
Period size: 109 Copynumber: 2.6 Consensus size: 109
31893685 GTTAAACAGG
* * * *
31893695 AAATCGAAACCAAGCACCTTAGGGCACG-TTCCTCGAATTTCCAAACGCAAAATATTGCCTTATT
1 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTATT
31893759 TTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
66 TTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
* * * *
31893803 AAATCGACACCCAGCGCCTTAGGGCGTGTTTTCTCAAATTTCCAAACGCAAAACATTGCCTTATT
1 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTATT
31893868 TTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
66 TTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
* * * *
31893912 AAAACAACACCCAGCACCTTAGGGTATGTTTTCTCGAATTTCCAAACGCTAAATATTGCCT
1 AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAATATTGCCT
31893973 CGATTAGAAA
Statistics
Matches: 153, Mismatches: 16, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
108 23 0.15
109 130 0.85
ACGTcount: A:0.35, C:0.21, G:0.15, T:0.29
Consensus pattern (109 bp):
AAATCGACACCCAGCACCTTAGGGCATGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTTATT
TTAAAATTTTTAAAAGGATATTAAGCCATTTGGTTGAACGAGAA
Found at i:31894304 original size:16 final size:17
Alignment explanation
Indices: 31894285--31894326 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
31894275 TATATAGATA
31894285 TACATATATAAA-TATG
1 TACATATATAAAGTATG
* *
31894301 TACATATAAAAAGTATT
1 TACATATATAAAGTATG
31894318 TA-ATATATA
1 TACATATATA
31894327 TATTAAATAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
16 17 0.77
17 5 0.23
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (17 bp):
TACATATATAAAGTATG
Found at i:31898342 original size:34 final size:34
Alignment explanation
Indices: 31898299--31898367 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
31898289 AGGTCCAATA
*
31898299 TGGGGTGTTACAAGAAGAATCTACTGTTTGTCCC
1 TGGGGTGTTACAAGAAGAATCTACCGTTTGTCCC
31898333 TGGGGTGTTACAAGAAGAATCTACCGTTTGTCCC
1 TGGGGTGTTACAAGAAGAATCTACCGTTTGTCCC
31898367 T
1 T
31898368 CCGCAGCATA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.23, C:0.19, G:0.26, T:0.32
Consensus pattern (34 bp):
TGGGGTGTTACAAGAAGAATCTACCGTTTGTCCC
Found at i:31899257 original size:25 final size:25
Alignment explanation
Indices: 31899229--31899335 Score: 73
Period size: 25 Copynumber: 4.5 Consensus size: 25
31899219 TTGCTCTCAT
*
31899229 CTCTTCTCTTGCTGGTTCTTTGTTC
1 CTCTTCTCGTGCTGGTTCTTTGTTC
*
31899254 CTC-T-AC-TGC---TTCTTTGTTC
1 CTCTTCTCGTGCTGGTTCTTTGTTC
* * * *
31899273 TTCTACTGGTGCTAGTTCTTTGTTC
1 CTCTTCTCGTGCTGGTTCTTTGTTC
* * *
31899298 TTCTGCTGGTGCTGGTTCTTTGTTC
1 CTCTTCTCGTGCTGGTTCTTTGTTC
* *
31899323 CTCTGCTGGTGCT
1 CTCTTCTCGTGCT
31899336 TTGTTCCTCT
Statistics
Matches: 68, Mismatches: 8, Indels: 12
0.77 0.09 0.14
Matches are distributed among these distances:
19 12 0.18
22 6 0.09
23 1 0.01
24 1 0.01
25 48 0.71
ACGTcount: A:0.03, C:0.25, G:0.21, T:0.51
Consensus pattern (25 bp):
CTCTTCTCGTGCTGGTTCTTTGTTC
Found at i:31899268 original size:19 final size:19
Alignment explanation
Indices: 31899244--31899280 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
31899234 CTCTTGCTGG
31899244 TTCTTTGTTCCTCTACTGC
1 TTCTTTGTTCCTCTACTGC
*
31899263 TTCTTTGTTCTTCTACTG
1 TTCTTTGTTCCTCTACTG
31899281 GTGCTAGTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.05, C:0.27, G:0.11, T:0.57
Consensus pattern (19 bp):
TTCTTTGTTCCTCTACTGC
Found at i:31902470 original size:15 final size:15
Alignment explanation
Indices: 31902450--31902502 Score: 74
Period size: 15 Copynumber: 3.6 Consensus size: 15
31902440 CAAACTATTT
31902450 TTAATTACATAAATA
1 TTAATTACATAAATA
*
31902465 TTAATTACA-AACT-
1 TTAATTACATAAATA
31902478 TATAATTACATAAATA
1 T-TAATTACATAAATA
31902494 TTAATTACA
1 TTAATTACA
31902503 AACTTGTGCC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
13 1 0.03
14 11 0.33
15 20 0.61
16 1 0.03
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (15 bp):
TTAATTACATAAATA
Found at i:31902485 original size:14 final size:15
Alignment explanation
Indices: 31902433--31902507 Score: 66
Period size: 15 Copynumber: 4.9 Consensus size: 15
31902423 AATAATCATC
*
31902433 TTAATTACAAACTATTT
1 TTAATTACAAAC--TTA
*
31902450 TTAATTACATAA-ATA
1 TTAATTACA-AACTTA
31902465 TTAATTACAAACTTA
1 TTAATTACAAACTTA
*
31902480 -TAATTACATAA-ATA
1 TTAATTACA-AACTTA
31902494 TTAATTACAAACTT
1 TTAATTACAAACTT
31902508 GTGCCTATAA
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
14 14 0.29
15 23 0.48
17 9 0.19
18 2 0.04
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (15 bp):
TTAATTACAAACTTA
Found at i:31902492 original size:29 final size:29
Alignment explanation
Indices: 31902433--31902507 Score: 114
Period size: 29 Copynumber: 2.5 Consensus size: 29
31902423 AATAATCATC
*
31902433 TTAATTACAAACTATTTTTAATTACATAAATA
1 TTAATTACAAAC---TTATAATTACATAAATA
31902465 TTAATTACAAACTTATAATTACATAAATA
1 TTAATTACAAACTTATAATTACATAAATA
31902494 TTAATTACAAACTT
1 TTAATTACAAACTT
31902508 GTGCCTATAA
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
29 30 0.71
32 12 0.29
ACGTcount: A:0.48, C:0.11, G:0.00, T:0.41
Consensus pattern (29 bp):
TTAATTACAAACTTATAATTACATAAATA
Found at i:31903412 original size:18 final size:18
Alignment explanation
Indices: 31903389--31903454 Score: 114
Period size: 18 Copynumber: 3.7 Consensus size: 18
31903379 AAAATATGAG
31903389 AAATGATGTTCACATTTT
1 AAATGATGTTCACATTTT
*
31903407 AAATGATGTTCACATTTC
1 AAATGATGTTCACATTTT
31903425 AAATGATGTTCACATTTT
1 AAATGATGTTCACATTTT
*
31903443 AAATGATTTTCA
1 AAATGATGTTCA
31903455 AATTGATGGA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 45 1.00
ACGTcount: A:0.35, C:0.12, G:0.11, T:0.42
Consensus pattern (18 bp):
AAATGATGTTCACATTTT
Found at i:31904003 original size:72 final size:72
Alignment explanation
Indices: 31903878--31904052 Score: 221
Period size: 72 Copynumber: 2.4 Consensus size: 72
31903868 AACAACAATG
* * * * *
31903878 CTAAACTT-GTTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATATTTTACTT
1 CTAAA-TTAGTTTTATCAATAGTTGTTTATATTTGGTCTTTAGATATTGAATTTATATTCTACTT
31903942 ATTTATGT-
65 ATTT-TGTA
* * *
31903950 GT-AATCTAGTTTTATTAAAAGTTGTTTATATTTGGTCTTTAGATATTGAATTTATATTCTACTT
1 CTAAAT-TAGTTTTATCAATAGTTGTTTATATTTGGTCTTTAGATATTGAATTTATATTCTACTT
*
31904014 ATTTTTTA
65 ATTTTGTA
31904022 CTAAATTAGTTTTATCAATAGTTGTTTATAT
1 CTAAATTAGTTTTATCAATAGTTGTTTATAT
31904053 GTAATTTTGG
Statistics
Matches: 87, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
70 1 0.01
71 5 0.06
72 78 0.90
73 3 0.03
ACGTcount: A:0.27, C:0.06, G:0.11, T:0.55
Consensus pattern (72 bp):
CTAAATTAGTTTTATCAATAGTTGTTTATATTTGGTCTTTAGATATTGAATTTATATTCTACTTA
TTTTGTA
Found at i:31906108 original size:13 final size:13
Alignment explanation
Indices: 31906087--31906150 Score: 92
Period size: 13 Copynumber: 4.9 Consensus size: 13
31906077 ACACTCAAAA
31906087 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
*
31906100 TTCTCAAAAGCAC
1 TTTTCAAAAGCAC
* * *
31906113 TTTTCCACAGCAG
1 TTTTCAAAAGCAC
31906126 TTTTCAAAAGCAC
1 TTTTCAAAAGCAC
31906139 TTTTCAAAAGCA
1 TTTTCAAAAGCA
31906151 ATAAAGAACT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 43 1.00
ACGTcount: A:0.36, C:0.25, G:0.09, T:0.30
Consensus pattern (13 bp):
TTTTCAAAAGCAC
Found at i:31909474 original size:17 final size:16
Alignment explanation
Indices: 31909437--31909467 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
31909427 GATTGAATCA
*
31909437 AATTTTATTAATTTTG
1 AATTTTAATAATTTTG
31909453 AATTTTAATAATTTT
1 AATTTTAATAATTTT
31909468 TTAATTTGAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.61
Consensus pattern (16 bp):
AATTTTAATAATTTTG
Found at i:31913018 original size:22 final size:22
Alignment explanation
Indices: 31912993--31913039 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
31912983 AGTGATCCAG
31912993 TTAAGTTCACCAACTACAACTC
1 TTAAGTTCACCAACTACAACTC
31913015 TTAAGTTCACCAACTACAACTC
1 TTAAGTTCACCAACTACAACTC
31913037 TTA
1 TTA
31913040 CACTGGTCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.36, C:0.30, G:0.04, T:0.30
Consensus pattern (22 bp):
TTAAGTTCACCAACTACAACTC
Found at i:31917780 original size:23 final size:22
Alignment explanation
Indices: 31917737--31917780 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
31917727 TTCTAAGTTG
31917737 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
31917760 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
31917781 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:31917875 original size:45 final size:45
Alignment explanation
Indices: 31917825--31917913 Score: 142
Period size: 45 Copynumber: 2.0 Consensus size: 45
31917815 AAACGATACT
* * *
31917825 CGGTGGATTCAGCACATAGCAACCACCTTATTAATAAATGATGTC
1 CGGTGGAATCAGCACATAACAACCACCTTACTAATAAATGATGTC
*
31917870 CGGTGGAATCAGCACATAACAACCACCTTACTAATCAATGATGT
1 CGGTGGAATCAGCACATAACAACCACCTTACTAATAAATGATGT
31917914 TTGGTTCACA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.25
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAACAACCACCTTACTAATAAATGATGTC
Found at i:31917987 original size:51 final size:50
Alignment explanation
Indices: 31917924--31918110 Score: 191
Period size: 51 Copynumber: 3.7 Consensus size: 50
31917914 TTGGTTCACA
* * *
31917924 TAGTAGCTTGCACATAGTACTACACATGTGACCATTATCATTCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA-TATCATTCGGTACACG
** * * * *
31917975 TAGTATTCTGCACATAGTACTACACACGTGATCGA-AAC-TATCTGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATATCAT-TC-GGTACACG
* * * *
31918026 TAGTAGCCTGTACATAGTACTACACATGCGACC-TATCATTCCGGTACATG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATATCATT-CGGTACACG
31918076 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
31918111 CACTTTCACT
Statistics
Matches: 107, Mismatches: 22, Indels: 14
0.75 0.15 0.10
Matches are distributed among these distances:
49 1 0.01
50 43 0.40
51 61 0.57
52 2 0.02
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATATCATTCGGTACACG
Done.