Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 116 of 189
Found at i:32593444 original size:21 final size:19
Alignment explanation
Indices: 32593420--32593475 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
32593410 CTCTCTCAAC
*
32593420 AAAAAATTTCAAAATAATTTT
1 AAAAAATTTCAAAAT-A-TTA
*
32593441 AAAAAATTTAAAAATATTA
1 AAAAAATTTCAAAATATTA
32593460 ATAAAAATTTCAAAAT
1 A-AAAAATTTCAAAAT
32593476 TTATATTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 3 0.10
20 14 0.45
21 14 0.45
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (19 bp):
AAAAAATTTCAAAATATTA
Found at i:32598897 original size:23 final size:23
Alignment explanation
Indices: 32598870--32598915 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
32598860 CTTTCTTATT
* *
32598870 ATAGTAATTTTCGGGGTATTACA
1 ATAGTAATTTTCGAGATATTACA
32598893 ATAGTAATTTTCGAGATATTACA
1 ATAGTAATTTTCGAGATATTACA
32598916 GCTAGACATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (23 bp):
ATAGTAATTTTCGAGATATTACA
Found at i:32601259 original size:196 final size:196
Alignment explanation
Indices: 32600925--32601320 Score: 623
Period size: 196 Copynumber: 2.0 Consensus size: 196
32600915 ATGTTTAATA
* * *
32600925 TGTCAAAGCAGAAACTTACTATTTCTTCCTTCGCAATATGCCAATACTTTTGTTAAAACAAAGTG
1 TGTCAAAGCAGAAACTCACTATTTCTTCCTCCGCAATATGCCAATACTTTTGCTAAAACAAAGTG
* * *
32600990 GAGTAGCTGTCCACTCTAAAAGCCTTTAAAGGTGCTATATTCTTTACTGCCGTTGTGATTTCTTC
66 GAGTAGCTGCCCACACCAAAAGCCTTTAAAGGTGCTATATTCTTTACTGCCGTTGTGATTTCTTC
*
32601055 AATTCGAAATTCCTCTATTAACGCCTTGTTCATATTTTCGTTAATACAATTGGTAATCCCTGATA
131 AATTCGAAATTCCTCTATTAACGCCCTGTTCATATTTTCGTTAATACAATTGGTAATCCCTGATA
32601120 G
196 G
* *
32601121 TGTCAAAGCAGAAACTCGCTATTTCTT-CTACCGCAATATGCCAATATTTTTGCTAAAACAAAGT
1 TGTCAAAGCAGAAACTCACTATTTCTTCCT-CCGCAATATGCCAATACTTTTGCTAAAACAAAGT
* * * *
32601185 GGGGTAGTTGCCCACACCAGAAGCCTTTAAAGGTGCTATATTCTTTACTGCCTTTGTGATTTCTT
65 GGAGTAGCTGCCCACACCAAAAGCCTTTAAAGGTGCTATATTCTTTACTGCCGTTGTGATTTCTT
* * * *
32601250 CAATTCGAAATTCTTCTGTTAACGCCCTGTTCATATTTTTGTTAATACAATTGGTAATCCTTGAT
130 CAATTCGAAATTCCTCTATTAACGCCCTGTTCATATTTTCGTTAATACAATTGGTAATCCCTGAT
32601315 AG
195 AG
32601317 TGTC
1 TGTC
32601321 CTCTCATCAT
Statistics
Matches: 182, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
195 2 0.01
196 180 0.99
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.37
Consensus pattern (196 bp):
TGTCAAAGCAGAAACTCACTATTTCTTCCTCCGCAATATGCCAATACTTTTGCTAAAACAAAGTG
GAGTAGCTGCCCACACCAAAAGCCTTTAAAGGTGCTATATTCTTTACTGCCGTTGTGATTTCTTC
AATTCGAAATTCCTCTATTAACGCCCTGTTCATATTTTCGTTAATACAATTGGTAATCCCTGATA
G
Found at i:32604388 original size:17 final size:18
Alignment explanation
Indices: 32604341--32604389 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
32604331 GGAATAAATA
* *
32604341 TTTCAATGACATAATAAT
1 TTTCAATAACATATTAAT
*
32604359 TTT-AATAATATATTAAT
1 TTTCAATAACATATTAAT
32604376 TTTCAAT-ACATATT
1 TTTCAATAACATATT
32604390 TTAGTCATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 20 0.77
18 6 0.23
ACGTcount: A:0.43, C:0.08, G:0.02, T:0.47
Consensus pattern (18 bp):
TTTCAATAACATATTAAT
Found at i:32606403 original size:28 final size:28
Alignment explanation
Indices: 32606359--32606426 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 28
32606349 CCTATACAGT
* *
32606359 AACAGT-ACAGTGTGGGCCTTAGCCCAA
1 AACAGTAACAGTGCGGGCCCTAGCCCAA
*
32606386 AACAGTAACAGTGCGGGCCCTAGCCCAG
1 AACAGTAACAGTGCGGGCCCTAGCCCAA
*
32606414 TACAGTAATCAGT
1 AACAGTAA-CAGT
32606427 ACAGTGCAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 6 0.17
28 25 0.71
29 4 0.11
ACGTcount: A:0.31, C:0.26, G:0.25, T:0.18
Consensus pattern (28 bp):
AACAGTAACAGTGCGGGCCCTAGCCCAA
Found at i:32606808 original size:27 final size:27
Alignment explanation
Indices: 32606778--32607028 Score: 292
Period size: 27 Copynumber: 9.3 Consensus size: 27
32606768 TATAATAGTT
*
32606778 ATTTTACCCTAT-GGGGGTATTTCAATC
1 ATTTTACCCT-TCGGGGGTATTTCGATC
32606805 ATTTTACCCTTCGGGGGTATTTCGATC
1 ATTTTACCCTTCGGGGGTATTTCGATC
32606832 ATTTTACCCTTCGGGGGTATTTCGATC
1 ATTTTACCCTTCGGGGGTATTTCGATC
** *
32606859 ATTTTACCCTTCATGGGTATTTCGGTC
1 ATTTTACCCTTCGGGGGTATTTCGATC
** * * *
32606886 ATTTTACCCTTTAGGGGCATTTTGGTC
1 ATTTTACCCTTCGGGGGTATTTCGATC
* * *
32606913 ATTTTACCCTTCGAGGGTATTTTGATT
1 ATTTTACCCTTCGGGGGTATTTCGATC
* * *
32606940 ATTTTACCTTTTGAGGGGT-TTTCGATA
1 ATTTTACCCTTCG-GGGGTATTTCGATC
*
32606967 ATTTTACCCTTCGAGGGTATTTCGATC
1 ATTTTACCCTTCGGGGGTATTTCGATC
* * *
32606994 ATTTTACCCTTCGAGGGTATTTTGGTC
1 ATTTTACCCTTCGGGGGTATTTCGATC
32607021 A-TTTACCC
1 ATTTTACCC
32607029 ACGAATCGCA
Statistics
Matches: 196, Mismatches: 25, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
26 12 0.06
27 180 0.92
28 4 0.02
ACGTcount: A:0.17, C:0.20, G:0.20, T:0.43
Consensus pattern (27 bp):
ATTTTACCCTTCGGGGGTATTTCGATC
Found at i:32611587 original size:25 final size:25
Alignment explanation
Indices: 32611557--32611617 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
32611547 TTTTGTCAAA
32611557 AATTTAATTAATAT-AAAATATTA-AT
1 AATTTAATTAAT-TGAAAA-ATTAGAT
*
32611582 AATTTAATAAATTGAAAAATTAGAT
1 AATTTAATTAATTGAAAAATTAGAT
*
32611607 AATTAAATTAA
1 AATTTAATTAA
32611618 AATTTAGGAG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
24 5 0.16
25 26 0.84
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.39
Consensus pattern (25 bp):
AATTTAATTAATTGAAAAATTAGAT
Found at i:32612147 original size:84 final size:84
Alignment explanation
Indices: 32612006--32612174 Score: 338
Period size: 84 Copynumber: 2.0 Consensus size: 84
32611996 AGCTAGAGTA
32612006 GAGTTCTTAAAAATTCTAAGTTCTAATTCTACTCAAAGTAAATAACAATTAATAATTAATATAAT
1 GAGTTCTTAAAAATTCTAAGTTCTAATTCTACTCAAAGTAAATAACAATTAATAATTAATATAAT
32612071 GCATATTAAATTATTATTT
66 GCATATTAAATTATTATTT
32612090 GAGTTCTTAAAAATTCTAAGTTCTAATTCTACTCAAAGTAAATAACAATTAATAATTAATATAAT
1 GAGTTCTTAAAAATTCTAAGTTCTAATTCTACTCAAAGTAAATAACAATTAATAATTAATATAAT
32612155 GCATATTAAATTATTATTT
66 GCATATTAAATTATTATTT
32612174 G
1 G
32612175 CTATTAATTT
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
84 85 1.00
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.40
Consensus pattern (84 bp):
GAGTTCTTAAAAATTCTAAGTTCTAATTCTACTCAAAGTAAATAACAATTAATAATTAATATAAT
GCATATTAAATTATTATTT
Found at i:32612277 original size:16 final size:15
Alignment explanation
Indices: 32612256--32612297 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
32612246 AAAGCTGATA
32612256 ATAATTAATATATATT
1 ATAATTAATATA-ATT
*
32612272 ATAATTGATATAATT
1 ATAATTAATATAATT
32612287 ATATATTAATA
1 ATA-ATTAATA
32612298 ATTATCATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (15 bp):
ATAATTAATATAATT
Found at i:32613417 original size:536 final size:536
Alignment explanation
Indices: 32612405--32613480 Score: 2152
Period size: 536 Copynumber: 2.0 Consensus size: 536
32612395 TTAATATTTA
32612405 TGAAAAGAGCAACCAAATATTTTAAAAATAATTCAATTATGTTCCTAGACTTAATGAAAATTCAA
1 TGAAAAGAGCAACCAAATATTTTAAAAATAATTCAATTATGTTCCTAGACTTAATGAAAATTCAA
32612470 AATTGAGTTGGAACATAAAACTTGGATCAAAATTGACCCATTTATTTGAAAAATTAAAAATTTAT
66 AATTGAGTTGGAACATAAAACTTGGATCAAAATTGACCCATTTATTTGAAAAATTAAAAATTTAT
32612535 TTTGTCATTTAGGGAATAACTTCTTCGGAAATTATGTTAAAATTAATTCCCAGGAAAGATTGGAG
131 TTTGTCATTTAGGGAATAACTTCTTCGGAAATTATGTTAAAATTAATTCCCAGGAAAGATTGGAG
32612600 AGGTCACAAGCGGTCCCACTTAAGTTCCAATCTCCTAGACAGAATTTATTTAAACATACTAATCC
196 AGGTCACAAGCGGTCCCACTTAAGTTCCAATCTCCTAGACAGAATTTATTTAAACATACTAATCC
32612665 CAAAAATATACCCTAAATCATTTATTCAAAAAAAAGAACAAGAAAAATTAAATATATGATAAAAT
261 CAAAAATATACCCTAAATCATTTATTCAAAAAAAAGAACAAGAAAAATTAAATATATGATAAAAT
32612730 GAACGAGATTTGATTCCTTTCAATTTTATCTCCCCAGTAATGTTTCAAGCGTTGAGCATTAACTC
326 GAACGAGATTTGATTCCTTTCAATTTTATCTCCCCAGTAATGTTTCAAGCGTTGAGCATTAACTC
32612795 AAAAATTACCTCCCTTACCTTGAAGTTCAACAACTCTGTATGGATAGACTCGATGAATCATAAAT
391 AAAAATTACCTCCCTTACCTTGAAGTTCAACAACTCTGTATGGATAGACTCGATGAATCATAAAT
32612860 GGACCGGACCAATGTGATTTTAACTTACCTAGAAAGAACCTTAATCTGGAATTGAATAACAAGAC
456 GGACCGGACCAATGTGATTTTAACTTACCTAGAAAGAACCTTAATCTGGAATTGAATAACAAGAC
32612925 TTGCTGACCTGTAAGT
521 TTGCTGACCTGTAAGT
32612941 TGAAAAGAGCAACCAAATATTTTAAAAATAATTCAATTATGTTCCTAGACTTAATGAAAATTCAA
1 TGAAAAGAGCAACCAAATATTTTAAAAATAATTCAATTATGTTCCTAGACTTAATGAAAATTCAA
32613006 AATTGAGTTGGAACATAAAACTTGGATCAAAATTGACCCATTTATTTGAAAAATTAAAAATTTAT
66 AATTGAGTTGGAACATAAAACTTGGATCAAAATTGACCCATTTATTTGAAAAATTAAAAATTTAT
32613071 TTTGTCATTTAGGGAATAACTTCTTCGGAAATTATGTTAAAATTAATTCCCAGGAAAGATTGGAG
131 TTTGTCATTTAGGGAATAACTTCTTCGGAAATTATGTTAAAATTAATTCCCAGGAAAGATTGGAG
32613136 AGGTCACAAGCGGTCCCACTTAAGTTCCAATCTCCTAGACAGAATTTATTTAAACATACTAATCC
196 AGGTCACAAGCGGTCCCACTTAAGTTCCAATCTCCTAGACAGAATTTATTTAAACATACTAATCC
32613201 CAAAAATATACCCTAAATCATTTATTCAAAAAAAAGAACAAGAAAAATTAAATATATGATAAAAT
261 CAAAAATATACCCTAAATCATTTATTCAAAAAAAAGAACAAGAAAAATTAAATATATGATAAAAT
32613266 GAACGAGATTTGATTCCTTTCAATTTTATCTCCCCAGTAATGTTTCAAGCGTTGAGCATTAACTC
326 GAACGAGATTTGATTCCTTTCAATTTTATCTCCCCAGTAATGTTTCAAGCGTTGAGCATTAACTC
32613331 AAAAATTACCTCCCTTACCTTGAAGTTCAACAACTCTGTATGGATAGACTCGATGAATCATAAAT
391 AAAAATTACCTCCCTTACCTTGAAGTTCAACAACTCTGTATGGATAGACTCGATGAATCATAAAT
32613396 GGACCGGACCAATGTGATTTTAACTTACCTAGAAAGAACCTTAATCTGGAATTGAATAACAAGAC
456 GGACCGGACCAATGTGATTTTAACTTACCTAGAAAGAACCTTAATCTGGAATTGAATAACAAGAC
32613461 TTGCTGACCTGTAAGT
521 TTGCTGACCTGTAAGT
32613477 TGAA
1 TGAA
32613481 GCATTCGTTT
Statistics
Matches: 540, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
536 540 1.00
ACGTcount: A:0.40, C:0.16, G:0.13, T:0.31
Consensus pattern (536 bp):
TGAAAAGAGCAACCAAATATTTTAAAAATAATTCAATTATGTTCCTAGACTTAATGAAAATTCAA
AATTGAGTTGGAACATAAAACTTGGATCAAAATTGACCCATTTATTTGAAAAATTAAAAATTTAT
TTTGTCATTTAGGGAATAACTTCTTCGGAAATTATGTTAAAATTAATTCCCAGGAAAGATTGGAG
AGGTCACAAGCGGTCCCACTTAAGTTCCAATCTCCTAGACAGAATTTATTTAAACATACTAATCC
CAAAAATATACCCTAAATCATTTATTCAAAAAAAAGAACAAGAAAAATTAAATATATGATAAAAT
GAACGAGATTTGATTCCTTTCAATTTTATCTCCCCAGTAATGTTTCAAGCGTTGAGCATTAACTC
AAAAATTACCTCCCTTACCTTGAAGTTCAACAACTCTGTATGGATAGACTCGATGAATCATAAAT
GGACCGGACCAATGTGATTTTAACTTACCTAGAAAGAACCTTAATCTGGAATTGAATAACAAGAC
TTGCTGACCTGTAAGT
Found at i:32619840 original size:18 final size:19
Alignment explanation
Indices: 32619814--32619850 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
32619804 AATTCTGGAA
32619814 TGGAAAGAAGAGA-GAAAG
1 TGGAAAGAAGAGAGGAAAG
*
32619832 TGGAGAGAAGAGAGGAAAG
1 TGGAAAGAAGAGAGGAAAG
32619851 ATGTGAATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.51, C:0.00, G:0.43, T:0.05
Consensus pattern (19 bp):
TGGAAAGAAGAGAGGAAAG
Found at i:32620260 original size:17 final size:16
Alignment explanation
Indices: 32620233--32620266 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
32620223 TTAATAACCC
*
32620233 AAATTAAATTAGATAT
1 AAATTAAATTAAATAT
32620249 AAATTAAAATTAAATAT
1 AAATT-AAATTAAATAT
32620266 A
1 A
32620267 TTTTGAATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (16 bp):
AAATTAAATTAAATAT
Found at i:32623999 original size:13 final size:13
Alignment explanation
Indices: 32623981--32624014 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
32623971 TATGGCTATT
32623981 GTGTTTATTTAGA
1 GTGTTTATTTAGA
32623994 GTGTTTATTTAGA
1 GTGTTTATTTAGA
*
32624007 ATGTTTAT
1 GTGTTTAT
32624015 ATATGAATTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.56
Consensus pattern (13 bp):
GTGTTTATTTAGA
Found at i:32626576 original size:76 final size:76
Alignment explanation
Indices: 32626386--32626584 Score: 215
Period size: 76 Copynumber: 2.6 Consensus size: 76
32626376 AAATGAGTGA
* ** * *
32626386 TTGATATCGTTGGTTTATCCGACTATTAATGGGCGCAAATCTTTGTTCGTATATCCAACTAGTAT
1 TTGATATCATTGGTTTATCCGACTAGCAATGGGCGCAAATCATTGTTCGTATATCCAACTAGTAC
*
32626451 TGGGCACACAT
66 TAGGCACACAT
* * * * *
32626462 TTGATATCATCT-GTTTATCCGACTAGCATTGCGTGCAAATCATTG-TCGGTTTATCCCACTAGT
1 TTGATATCAT-TGGTTTATCCGACTAGCAATGGGCGCAAATCATTGTTC-GTATATCCAACTAGT
*
32626525 GCTAGGCACACAT
64 ACTAGGCACACAT
* **
32626538 TTGATATCATTGGTTTATTCGACTAGCGCTGGGCGCAAAAT-ATTGTT
1 TTGATATCATTGGTTTATCCGACTAGCAATGGGCGC-AAATCATTGTT
32626585 ATGATTTATC
Statistics
Matches: 101, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
75 3 0.03
76 92 0.91
77 6 0.06
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (76 bp):
TTGATATCATTGGTTTATCCGACTAGCAATGGGCGCAAATCATTGTTCGTATATCCAACTAGTAC
TAGGCACACAT
Found at i:32630320 original size:40 final size:40
Alignment explanation
Indices: 32630276--32630388 Score: 108
Period size: 36 Copynumber: 2.9 Consensus size: 40
32630266 AGCACAGTGA
*
32630276 TAGGCACACATTTGATATCGTCAGTTTATCCAACTAGCGT
1 TAGGCACACATTTGATATCGTCAGTTTATCCAACTAGCGC
* * * *
32630316 TAGGCGCA-A-CTCAT-T-GTCAGTTTATCCAACTAGTGC
1 TAGGCACACATTTGATATCGTCAGTTTATCCAACTAGCGC
* * * * *
32630352 TAAGCACACATTTGATACCTTCAATTTATCCGACTAG
1 TAGGCACACATTTGATATCGTCAGTTTATCCAACTAG
32630389 TGCTGGGTGC
Statistics
Matches: 56, Mismatches: 13, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
36 25 0.45
37 2 0.04
38 6 0.11
39 1 0.02
40 22 0.39
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (40 bp):
TAGGCACACATTTGATATCGTCAGTTTATCCAACTAGCGC
Found at i:32630485 original size:76 final size:75
Alignment explanation
Indices: 32630279--32630476 Score: 261
Period size: 76 Copynumber: 2.6 Consensus size: 75
32630269 ACAGTGATAG
* * * * * *
32630279 GCACACATTTGATATCGTCAGTTTATCCAACTAGCGTTAGGCGCAACTCATTGTCAGTTTATCCA
1 GCACACATTTGATACCTTCA-TTTATCCGACTAGAGTTGGGCGCAACTCATTGTTAGTTTATCCA
32630344 ACTAGTGCTAA
65 ACTAGTGCTAA
* * * * **
32630355 GCACACATTTGATACCTTCAATTTATCCGACTAGTGCTGGGTGCAACTCATTGTTGGTTTATCTT
1 GCACACATTTGATACCTTC-ATTTATCCGACTAGAGTTGGGCGCAACTCATTGTTAGTTTATCCA
32630420 ACTAGTGCTAA
65 ACTAGTGCTAA
32630431 GCACACATTTGATACCTTCTATTTATCCGACTAGAGTTGGGCGCAA
1 GCACACATTTGATACCTTC-ATTTATCCGACTAGAGTTGGGCGCAA
32630477 AACTTTGTTA
Statistics
Matches: 106, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
76 105 0.99
77 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (75 bp):
GCACACATTTGATACCTTCATTTATCCGACTAGAGTTGGGCGCAACTCATTGTTAGTTTATCCAA
CTAGTGCTAA
Found at i:32632989 original size:14 final size:14
Alignment explanation
Indices: 32632967--32632999 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
32632957 ATGATTATAG
*
32632967 ATTTTAATCGGCTA
1 ATTTAAATCGGCTA
32632981 ATTTAAATCGGCTA
1 ATTTAAATCGGCTA
32632995 ATTTA
1 ATTTA
32633000 TATAAATATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.33, C:0.12, G:0.12, T:0.42
Consensus pattern (14 bp):
ATTTAAATCGGCTA
Found at i:32633331 original size:14 final size:14
Alignment explanation
Indices: 32633312--32633362 Score: 59
Period size: 14 Copynumber: 3.6 Consensus size: 14
32633302 CACAATTTGA
32633312 TTCTCAATTTCTTG
1 TTCTCAATTTCTTG
*
32633326 TTCTCAATTGCTTG
1 TTCTCAATTTCTTG
* *
32633340 TTCTTAATGTT-TTA
1 TTCTCAAT-TTCTTG
32633354 TTCTCAATT
1 TTCTCAATT
32633363 GTCAATTCTT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
13 1 0.03
14 29 0.94
15 1 0.03
ACGTcount: A:0.18, C:0.18, G:0.08, T:0.57
Consensus pattern (14 bp):
TTCTCAATTTCTTG
Found at i:32633396 original size:28 final size:28
Alignment explanation
Indices: 32633340--32633397 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 28
32633330 CAATTGCTTG
* **
32633340 TTCTTAATGTTTTATTCTCAATTGTCAA
1 TTCTTAATGTTTTATTCTAAATTCCCAA
* *
32633368 TTCTTGATTTTTTATTCTAAATTCCCAA
1 TTCTTAATGTTTTATTCTAAATTCCCAA
32633396 TT
1 TT
32633398 TTTTTTAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.05, T:0.55
Consensus pattern (28 bp):
TTCTTAATGTTTTATTCTAAATTCCCAA
Found at i:32633593 original size:50 final size:52
Alignment explanation
Indices: 32633512--32633609 Score: 155
Period size: 50 Copynumber: 1.9 Consensus size: 52
32633502 TGACAAATGG
** *
32633512 TAAGAAAATATTATTAAATTATTTAGTTTTAATTAGTTAATTATTATGATGT
1 TAAGAAAATATTATTAAATTATTTAAATTTAAATAGTTAATTATTATGATGT
32633564 TAAGAAAAT-TTATTAAA-TATTTAAATTTAAATAGTTAATTATTATG
1 TAAGAAAATATTATTAAATTATTTAAATTTAAATAGTTAATTATTATG
32633610 CGGTTTAGAT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
50 26 0.60
51 8 0.19
52 9 0.21
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (52 bp):
TAAGAAAATATTATTAAATTATTTAAATTTAAATAGTTAATTATTATGATGT
Found at i:32640996 original size:49 final size:49
Alignment explanation
Indices: 32640831--32640977 Score: 204
Period size: 49 Copynumber: 3.0 Consensus size: 49
32640821 CGTTGCCGAA
* * * * *
32640831 CAACCTGGGATGACAGAATAATCAAATACTAAAAGCCATCATTCTTGGG
1 CAACCCGGGATGGCAGAATAAACAAATACTAAAAGTCATCATTGTTGGG
* * *
32640880 CAACCCGGGATGGTAGAATAAACAAATACTAAAAATCATCATTGTCGGG
1 CAACCCGGGATGGCAGAATAAACAAATACTAAAAGTCATCATTGTTGGG
* *
32640929 CAACCCGAGATGGCAGAATAAACAAATACTAAAAGTCATCGTTGTTGGG
1 CAACCCGGGATGGCAGAATAAACAAATACTAAAAGTCATCATTGTTGGG
32640978 TAAATTGGGA
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 85 1.00
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.21
Consensus pattern (49 bp):
CAACCCGGGATGGCAGAATAAACAAATACTAAAAGTCATCATTGTTGGG
Found at i:32646588 original size:18 final size:18
Alignment explanation
Indices: 32646565--32646601 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
32646555 TTTATATAAC
*
32646565 AATCCCAGAAGGATTTAG
1 AATCCCAGAAGGATATAG
*
32646583 AATCCCTGAAGGATATAG
1 AATCCCAGAAGGATATAG
32646601 A
1 A
32646602 GTTTCCCAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.41, C:0.16, G:0.22, T:0.22
Consensus pattern (18 bp):
AATCCCAGAAGGATATAG
Found at i:32651235 original size:15 final size:15
Alignment explanation
Indices: 32651204--32651242 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
32651194 GAATATTACA
*
32651204 TTATTACATCTAATAT
1 TTATTA-ATCCAATAT
32651220 TTATTAATCCAATAT
1 TTATTAATCCAATAT
32651235 TATATTAA
1 T-TATTAA
32651243 AAACTTTCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.41, C:0.10, G:0.00, T:0.49
Consensus pattern (15 bp):
TTATTAATCCAATAT
Found at i:32653526 original size:37 final size:37
Alignment explanation
Indices: 32653449--32653527 Score: 90
Period size: 37 Copynumber: 2.1 Consensus size: 37
32653439 TTATTTCGAA
* * *
32653449 GTCTTACCCAGACATAACCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAACCTCCACACGAAGTCATCAG
*
32653486 GTCTTACCCGGACAAAATCC-CCACAC-ATAGTCATCAG
1 GTCTTACCCAGACAAAA-CCTCCACACGA-AGTCATCAG
32653523 GTCTT
1 GTCTT
32653528 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
36 1 0.03
37 33 0.92
38 2 0.06
ACGTcount: A:0.29, C:0.33, G:0.15, T:0.23
Consensus pattern (37 bp):
GTCTTACCCAGACAAAACCTCCACACGAAGTCATCAG
Found at i:32653916 original size:49 final size:49
Alignment explanation
Indices: 32653646--32653986 Score: 500
Period size: 47 Copynumber: 7.1 Consensus size: 49
32653636 CCCTTCGGGA
* * * * *
32653646 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32653693 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32653740 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32653787 CCTATCAC--GTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
32653834 CTTATCACATATATATATACGCTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCAC--ATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32653885 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
32653934 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCAATAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
32653983 CTTA
1 CTTA
32653987 CTATCATTTC
Statistics
Matches: 270, Mismatches: 18, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 134 0.50
49 91 0.34
51 44 0.16
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:32657704 original size:19 final size:20
Alignment explanation
Indices: 32657669--32657706 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
32657659 ATAGTGAGAA
*
32657669 TATATTTTCTAAGAATAAAT
1 TATATCTTCTAAGAATAAAT
32657689 TATATCTTCT-AGAATAAA
1 TATATCTTCTAAGAATAAA
32657707 AATTCTACCG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.45, C:0.08, G:0.05, T:0.42
Consensus pattern (20 bp):
TATATCTTCTAAGAATAAAT
Found at i:32658630 original size:464 final size:464
Alignment explanation
Indices: 32657762--32658670 Score: 1613
Period size: 464 Copynumber: 2.0 Consensus size: 464
32657752 GATGGAATGC
* *
32657762 GCAAGTATACACAGCCACTATTAACTAATAAGTGAGTAAAAAGAGTATAGTCTCCATAGGGACTG
1 GCAAGTATACACAGCCACTATCAACTAATAAGTGAGTAAAAAGAGTATAGTCTCCATAGGAACTG
32657827 TATTGATAAACAACAATTGTAAAATTAATGTTTGACAAGTTGGTTATGAAAATAAAATATTTGAT
66 TATTGATAAACAACAATTGTAAAATTAATGTTTGACAAGTTGGTTATGAAAATAAAATATTTGAT
*
32657892 GGTGATAAATGTCCAAATTAAATTGACAACTAATATGCAAATGAAATAGAATAAAATGCAATGGA
131 GGTGATAAATGTCCAAATTAAATTGACAACTAATATGCAAATGAAATAAAATAAAATGCAATGGA
32657957 ATGTTTAACAACAATTCACAAGATTTAACAACAATAACATGATTAAGCTAGAACAATTACAACTC
196 ATGTTTAACAACAATTCACAAGATTTAACAACAATAACATGATTAAGCTAGAACAATTACAACTC
* * *
32658022 TTAATTCGATTCATTCATCATTATGCTTAGCAAACGTTCCGAAAAAATTTCATGGCAACTCGATT
261 TTAATTCAATTCATTCATCATCATGCTTAGCAAACGTTCCGAAAAAATTTCATGGCAACCCGATT
32658087 ATTTATGAACTTGAAATCTAAAATCATAAGCTCTTTCGAGATCATATATTTATCACTTAGAAAAA
326 ATTTATGAACTTGAAATCTAAAATCATAAGCTCTTTCGAGATCATATATTTATCACTTAGAAAAA
32658152 CATGCATATTTTTATGTCAACATTTAACGGATTTATTAGAATTTATGCAAAGTAATAGGACAGGT
391 CATGCATATTTTTATGTCAACATTTAACGGATTTATTAGAATTTATGCAAAGTAATAGGACAGGT
32658217 CAAGAATAT
456 CAAGAATAT
* * *
32658226 GCAAGTATACACAGTCACTATCAAGTAATAAGTGAGTAAAAGGAGTATAGTCTCCATAGGAACTG
1 GCAAGTATACACAGCCACTATCAACTAATAAGTGAGTAAAAAGAGTATAGTCTCCATAGGAACTG
* *
32658291 TATTGATAAACAACAGTTGTAAAATTAATGTTTTACAAGTTGGTTATGAAAATAAAATATTTGAT
66 TATTGATAAACAACAATTGTAAAATTAATGTTTGACAAGTTGGTTATGAAAATAAAATATTTGAT
*
32658356 GGTGATAAATGTCCTAATTAAATTGACAACTAATATGCAAAT-AAGATAAAATAAAATGCAATGG
131 GGTGATAAATGTCCAAATTAAATTGACAACTAATATGCAAATGAA-ATAAAATAAAATGCAATGG
* *
32658420 AATGTTTAGCAGCAATTCACAAGATTTAACAACAATAACATGATTAAGCTAGAACAATTACAACT
195 AATGTTTAACAACAATTCACAAGATTTAACAACAATAACATGATTAAGCTAGAACAATTACAACT
* * **
32658485 CTTAATTCAATTCATTCATCATCATGCTTAGCGAACGTTTCGAAAATTTTTCATGGCAACCCGAT
260 CTTAATTCAATTCATTCATCATCATGCTTAGCAAACGTTCCGAAAAAATTTCATGGCAACCCGAT
*
32658550 TATTTATGAACTTGAAATCTAAAATCATAAGCTCTTTCGAGATCTTATATTTATCACTTAGAAAA
325 TATTTATGAACTTGAAATCTAAAATCATAAGCTCTTTCGAGATCATATATTTATCACTTAGAAAA
**
32658615 ATGTGCATATTTTTATGTCAACATTTAACGGATTTATTAGAATTTATGCAAAGTAA
390 ACATGCATATTTTTATGTCAACATTTAACGGATTTATTAGAATTTATGCAAAGTAA
32658671 CATGGACAAG
Statistics
Matches: 423, Mismatches: 21, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
463 2 0.00
464 421 1.00
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.32
Consensus pattern (464 bp):
GCAAGTATACACAGCCACTATCAACTAATAAGTGAGTAAAAAGAGTATAGTCTCCATAGGAACTG
TATTGATAAACAACAATTGTAAAATTAATGTTTGACAAGTTGGTTATGAAAATAAAATATTTGAT
GGTGATAAATGTCCAAATTAAATTGACAACTAATATGCAAATGAAATAAAATAAAATGCAATGGA
ATGTTTAACAACAATTCACAAGATTTAACAACAATAACATGATTAAGCTAGAACAATTACAACTC
TTAATTCAATTCATTCATCATCATGCTTAGCAAACGTTCCGAAAAAATTTCATGGCAACCCGATT
ATTTATGAACTTGAAATCTAAAATCATAAGCTCTTTCGAGATCATATATTTATCACTTAGAAAAA
CATGCATATTTTTATGTCAACATTTAACGGATTTATTAGAATTTATGCAAAGTAATAGGACAGGT
CAAGAATAT
Found at i:32659884 original size:27 final size:28
Alignment explanation
Indices: 32659846--32659908 Score: 112
Period size: 27 Copynumber: 2.3 Consensus size: 28
32659836 ATAAAATTAG
32659846 CATTTAATTACTTAAAATTACAATA-TT
1 CATTTAATTACTTAAAATTACAATATTT
32659873 CATTTAATTACTTAAAATTACAATATTT
1 CATTTAATTACTTAAAATTACAATATTT
32659901 C-TTTAATT
1 CATTTAATT
32659909 TTTCCCAATT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
27 32 0.91
28 3 0.09
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (28 bp):
CATTTAATTACTTAAAATTACAATATTT
Found at i:32667986 original size:29 final size:29
Alignment explanation
Indices: 32667931--32667986 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
32667921 CATTTTTTGT
***
32667931 GTTTCGGGTACACACCTGGTTTTGTTTAA
1 GTTTCGGGTACACACCTGGTAACGTTTAA
*
32667960 GTTTCGGGTACACACTTGGTAACGTTT
1 GTTTCGGGTACACACCTGGTAACGTTT
32667987 GATACTAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.18, C:0.18, G:0.25, T:0.39
Consensus pattern (29 bp):
GTTTCGGGTACACACCTGGTAACGTTTAA
Found at i:32673346 original size:19 final size:19
Alignment explanation
Indices: 32673305--32673346 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
32673295 TTATTAAAAC
*
32673305 TTAATTAACCATAATTTAT
1 TTAATTAACCATAATTTAA
*
32673324 TTAATTAAACCTTAA-TTAA
1 TTAATT-AACCATAATTTAA
32673343 TTAA
1 TTAA
32673347 AAGTTTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.45
Consensus pattern (19 bp):
TTAATTAACCATAATTTAA
Found at i:32677008 original size:75 final size:76
Alignment explanation
Indices: 32676846--32677018 Score: 242
Period size: 75 Copynumber: 2.3 Consensus size: 76
32676836 CTTACTTTTC
* * ***
32676846 ATTAATAAGGGAATAATCCTATATTCTTTTAGAAAGAATATAATTCCTTTTTTTCTAACTTTTTG
1 ATTAATAAGGGAATAATCCTAAATTCTTTTAGAAAGAATATAATTCC-TATTTTCTAACTTTCCA
* *
32676911 TTTGCCTTCTTT
65 TTTGCATTCTCT
*
32676923 ATTAATAAGGGAATAATCCTAAATTCTTTTGGGAAAGAATATAATT-C-ATTTTCTAACTTTCCA
1 ATTAATAAGGGAATAATCCTAAATTCTTTT-AGAAAGAATATAATTCCTATTTTCTAACTTTCCA
32676986 TTTGCATTCTCT
65 TTTGCATTCTCT
32676998 ATTAATAAGGGAATAATCCTA
1 ATTAATAAGGGAATAATCCTA
32677019 GTTTTCCTTT
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
75 43 0.49
77 30 0.34
78 14 0.16
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.43
Consensus pattern (76 bp):
ATTAATAAGGGAATAATCCTAAATTCTTTTAGAAAGAATATAATTCCTATTTTCTAACTTTCCAT
TTGCATTCTCT
Found at i:32687812 original size:39 final size:39
Alignment explanation
Indices: 32687767--32687843 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
32687757 CAATTGTTTT
32687767 TAAAATACAATTTATTGCCTGATGACATATATACTATAA
1 TAAAATACAATTTATTGCCTGATGACATATATACTATAA
*
32687806 TAAAATACAATTTATTGCCTGATGACATATATTCTATA
1 TAAAATACAATTTATTGCCTGATGACATATATACTATA
32687844 GTACTAACTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.42, C:0.13, G:0.08, T:0.38
Consensus pattern (39 bp):
TAAAATACAATTTATTGCCTGATGACATATATACTATAA
Found at i:32697635 original size:19 final size:20
Alignment explanation
Indices: 32697611--32697650 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
32697601 GAAAATATTC
*
32697611 TGAATTAGCTTTTTG-AAAT
1 TGAATTAGCTGTTTGCAAAT
*
32697630 TGAATTTGCTGTTTGCAAAT
1 TGAATTAGCTGTTTGCAAAT
32697650 T
1 T
32697651 ACTTCATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.28, C:0.07, G:0.17, T:0.47
Consensus pattern (20 bp):
TGAATTAGCTGTTTGCAAAT
Found at i:32699125 original size:39 final size:39
Alignment explanation
Indices: 32699080--32699156 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
32699070 CAATTGTTTT
32699080 TAAAATACAATTTATTGCCTGATGACATATATACTATAA
1 TAAAATACAATTTATTGCCTGATGACATATATACTATAA
*
32699119 TAAAATACAATTTATTGCCTGATGACATATATTCTATA
1 TAAAATACAATTTATTGCCTGATGACATATATACTATA
32699157 GTACTAACTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.42, C:0.13, G:0.08, T:0.38
Consensus pattern (39 bp):
TAAAATACAATTTATTGCCTGATGACATATATACTATAA
Found at i:32706231 original size:19 final size:20
Alignment explanation
Indices: 32706207--32706246 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
32706197 GAAAATATTC
*
32706207 TGAATTAGCTTTTTG-AAAT
1 TGAATTAGCTGTTTGCAAAT
*
32706226 TGAATTTGCTGTTTGCAAAT
1 TGAATTAGCTGTTTGCAAAT
32706246 T
1 T
32706247 ACTTCATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.28, C:0.07, G:0.17, T:0.47
Consensus pattern (20 bp):
TGAATTAGCTGTTTGCAAAT
Found at i:32717883 original size:15 final size:14
Alignment explanation
Indices: 32717863--32717896 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 14
32717853 GATAAGTGAA
32717863 ATGAAAGTGATGGTT
1 ATGAAAG-GATGGTT
32717878 ATGAAAAGGATGGTT
1 ATG-AAAGGATGGTT
32717893 ATGA
1 ATGA
32717897 GGTGTGAGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 1 0.06
15 13 0.72
16 4 0.22
ACGTcount: A:0.38, C:0.00, G:0.32, T:0.29
Consensus pattern (14 bp):
ATGAAAGGATGGTT
Found at i:32722406 original size:20 final size:20
Alignment explanation
Indices: 32722381--32722421 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
32722371 GACTTATATC
32722381 TCATATAGCACCATCAAACA
1 TCATATAGCACCATCAAACA
*
32722401 TCATATAGCATCATCAAACA
1 TCATATAGCACCATCAAACA
32722421 T
1 T
32722422 TCTTACTTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.44, C:0.27, G:0.05, T:0.24
Consensus pattern (20 bp):
TCATATAGCACCATCAAACA
Found at i:32727182 original size:94 final size:94
Alignment explanation
Indices: 32727059--32727341 Score: 286
Period size: 104 Copynumber: 2.9 Consensus size: 94
32727049 AAGTGATGCT
*
32727059 TGGTAGGAAATACTGATTTTGGGTTAATTCCTACCTAAATAACTTCCTAGGGTTGTCAATCCTAG
1 TGGTAGGCAATACTGA-TTTGGGTTAATTCCTACCTAAATAACTTCCTAGGGTTGTCAATCCTAG
*
32727124 GGTTTAATTGCAATCAATCAGGT-TTTCA-A
65 GGTTTAATTGCAATCAATCA-CTATTTCATA
* * *
32727153 -GGATAGGCAATACTGATTTCAGGTTAATTCAC-ACCTATATAACTTCCTAGGATTGTCAATCCT
1 TGG-TAGGCAATACTGATTT-GGGTTAATTC-CTACCTAAATAACTTCCTAGGGTTGTCAATCCT
* * ** * *
32727216 AGGGTTTACGTTCTTCCTTCCCTAACCACTAATTTGATA
63 AGGGTTTA--AT-TGCAAT--C-AATCACT-ATTTCATA
*
32727255 CTTGGTAGGCAATACTAATCTTGGGTTAATTCCTACCTAAATAACTTCCTAGGGTTGTCAATCCT
1 --TGGTAGGCAATACTGAT-TTGGGTTAATTCCTACCTAAATAACTTCCTAGGGTTGTCAATCCT
*
32727320 AGGGTTTAATTGCACTCAATCA
63 AGGGTTTAATTGCAATCAATCA
32727342 AATCTAACCA
Statistics
Matches: 152, Mismatches: 20, Indels: 30
0.75 0.10 0.15
Matches are distributed among these distances:
93 5 0.03
94 58 0.38
95 1 0.01
96 1 0.01
97 3 0.02
98 4 0.03
99 3 0.02
100 4 0.03
101 7 0.05
102 2 0.01
103 1 0.01
104 59 0.39
105 4 0.03
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (94 bp):
TGGTAGGCAATACTGATTTGGGTTAATTCCTACCTAAATAACTTCCTAGGGTTGTCAATCCTAGG
GTTTAATTGCAATCAATCACTATTTCATA
Found at i:32727873 original size:20 final size:21
Alignment explanation
Indices: 32727826--32727873 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
32727816 ACCAGAAGTT
*
32727826 ATGTTGCAACATAGGCCTACG
1 ATGTTGCAACATAGGCATACG
* *
32727847 GTGTTGCAACATAGG-ATCCG
1 ATGTTGCAACATAGGCATACG
32727867 ATGTTGC
1 ATGTTGC
32727874 GATATAGTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
20 9 0.39
21 14 0.61
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (21 bp):
ATGTTGCAACATAGGCATACG
Found at i:32730773 original size:20 final size:20
Alignment explanation
Indices: 32730748--32730786 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
32730738 TATCATGATC
32730748 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TACTTACTTG
32730768 TTTACTTACTTACTTACTT
1 TTTACTTACTTACTTACTT
32730787 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.18, C:0.23, G:0.03, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTACTTACTTG
Found at i:32731114 original size:50 final size:50
Alignment explanation
Indices: 32731039--32731182 Score: 155
Period size: 50 Copynumber: 2.9 Consensus size: 50
32731029 TCCTGTACTA
* * * * * **
32731039 CCAATGCCATATCTCAGATATGGTCTTACATGGGAGTTCTCATATCGGTG
1 CCAACGCCATGTCTCAAACATGGTCTTACGTGGGACCTCTCATATCGGTG
* * * * *
32731089 CCCATGCCATGT-TCTAGACATGGTCTTACGGGGGACCTCTCATCTCGGTG
1 CCAACGCCATGTCTC-AAACATGGTCTTACGTGGGACCTCTCATATCGGTG
*
32731139 CCAACGCCATGTCTCAAATATGGTCTTACGTGGGACCTCTCATA
1 CCAACGCCATGTCTCAAACATGGTCTTACGTGGGACCTCTCATA
32731183 ATCTCAATAA
Statistics
Matches: 78, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
49 2 0.03
50 74 0.95
51 2 0.03
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (50 bp):
CCAACGCCATGTCTCAAACATGGTCTTACGTGGGACCTCTCATATCGGTG
Found at i:32738829 original size:527 final size:526
Alignment explanation
Indices: 32737837--32738895 Score: 1811
Period size: 527 Copynumber: 2.0 Consensus size: 526
32737827 GAGGTTTACG
* * *
32737837 TTCAGATTTTGGAGCAAATTGCATGAAGCTTTAGGCACCAAACTTAATTGTCAATCTGAGCTAGT
1 TTCAGATTTTGGAGCAAATTGCATGAAGCTTTAGGCACCAAACTCAATGGTCAATCTAAGCTAGT
*
32737902 ACTCCAAGTACTCGAAGACATGTTGTGTTTTTGCATAACTGAATTTGAGGGAAGCTGGGAAATAT
66 ACTCCAAGTACTCGAAGACATCTTGTGTTTTTGCATAACTGAATTTGAGGGAAGCTGGGAAATAT
* *
32737967 TTTTACCGTGGTTAAATTTGCATTCAATAATAGCTATCAATCGAGCATCAAAATGGCACCTTACA
131 TTTTACCGTGGTGAAATTCGCATTCAATAATAGCTATCAATCGAGCATCAAAATGGCACCTTACA
32738032 AATATTTATATGGTCGTAAATGTCAAACTCCTCTATGTTCGTTAGAATTGAGTGAAAGAAAAATA
196 AATATTTATATGGTCGTAAATGTCAAACTCCTCTATGTTCGTTAGAATTGAGTGAAAGAAAAATA
32738097 GCAAGAAGAGACTTGATGCGAGAAACAAAAGATAAAGTTAGAATTATTAAAGATTCCTTAAAAGT
261 GCAAGAAGAGACTTGATGCGAGAAACAAAAGATAAAGTTAGAATTATTAAAGATTCCTTAAAAGT
* * *
32738162 TGCATCTAGTAGACAAAAATCTTACACTGGCCTAAAAATAAAGGGTATCGAGTTTTAAATTGGTG
326 TGCATCTAGTAGACAAAAATCTTACACTGACCTAAAAATAAAGAGTATCGAGTTTAAAATTGGTG
*
32738227 ATAAAGTATTTCTGAAGGTTTCAACTTGGAAGAAAGTTCTGTGATTCGGTAGAAAAAGGAAGCAC
391 ATAAAGTATTTCTAAAGGTTTCAACTTGGAAGAAAGTTCTGTGATTCGGTAGAAAAAGGAAGCAC
* *
32738292 GGTCCAAGGTTCATTAGACCGTATGAAAGTCT-CAAAGCAATTGGGCCTACAGCATACCGTTTAG
456 GGTCCAAGGTTCATTAGACAGTATGAAAGTCTGAAAAG-AATTGGGCCTACAGCATACCGTTTAG
32738356 CCCTACC
520 CCCTACC
32738363 TTCAGATTTTGGAGCAAATTGCATGAAGCTTTAGGCACCAAACTCAATGGTCAATCTAAG-TGAG
1 TTCAGATTTTGGAGCAAATTGCATGAAGCTTTAGGCACCAAACTCAATGGTCAATCTAAGCT-AG
* *
32738427 TACTCCAAGTACTCGAAGACATCTTGTGTTTTTGCGTAATTGAATTTGAGGGAAGCTGGG-AATG
65 TACTCCAAGTACTCGAAGACATCTTGTGTTTTTGCATAACTGAATTTGAGGGAAGCTGGGAAAT-
* *
32738491 ATTTTTACCGGTGGTGAAATTCGCATTCAATAATAGCTATCAATCTAGCATCAAAATGGTGA-CT
129 ATTTTTACC-GTGGTGAAATTCGCATTCAATAATAGCTATCAATCGAGCATCAAAATGG-CACCT
* * *
32738555 TACGAATATTTATATGGTCGTAAATTTCAAACTCCTCTATGTTGGTTAGAATTGAGTGAAAGAAA
192 TACAAATATTTATATGGTCGTAAATGTCAAACTCCTCTATGTTCGTTAGAATTGAGTGAAAGAAA
* *
32738620 AATAGCAAGAATAGACTTGATGTGAGAAACAAAAGATAAAGTTAGAATTATTAAAGATTCCTTAA
257 AATAGCAAGAAGAGACTTGATGCGAGAAACAAAAGATAAAGTTAGAATTATTAAAGATTCCTTAA
*
32738685 AAGTTGCATCTAGTAGACAAAAATCTTACGCTGACCTAAAAATAAAGAGTATCGAGTTTAAAATT
322 AAGTTGCATCTAGTAGACAAAAATCTTACACTGACCTAAAAATAAAGAGTATCGAGTTTAAAATT
* *
32738750 GGTGATAAAGTATTTCTAAAGGTTTCAACTTGGAAGAAAGTTCTGTGATTTGGTAGAAAAGGGAA
387 GGTGATAAAGTATTTCTAAAGGTTTCAACTTGGAAGAAAGTTCTGTGATTCGGTAGAAAAAGGAA
*
32738815 GCACGGTCCAAGGTTCATTAGACAGTATGAAAGTCTGAAAAGAATTGGGCCTATAGCATACCGTT
452 GCACGGTCCAAGGTTCATTAGACAGTATGAAAGTCTGAAAAGAATTGGGCCTACAGCATACCGTT
32738880 TAGCCCTACC
517 TAGCCCTACC
*
32738890 TCCAGA
1 TTCAGA
32738896 GTTGGACAAG
Statistics
Matches: 502, Mismatches: 26, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
525 4 0.01
526 125 0.25
527 368 0.73
528 5 0.01
ACGTcount: A:0.36, C:0.15, G:0.20, T:0.29
Consensus pattern (526 bp):
TTCAGATTTTGGAGCAAATTGCATGAAGCTTTAGGCACCAAACTCAATGGTCAATCTAAGCTAGT
ACTCCAAGTACTCGAAGACATCTTGTGTTTTTGCATAACTGAATTTGAGGGAAGCTGGGAAATAT
TTTTACCGTGGTGAAATTCGCATTCAATAATAGCTATCAATCGAGCATCAAAATGGCACCTTACA
AATATTTATATGGTCGTAAATGTCAAACTCCTCTATGTTCGTTAGAATTGAGTGAAAGAAAAATA
GCAAGAAGAGACTTGATGCGAGAAACAAAAGATAAAGTTAGAATTATTAAAGATTCCTTAAAAGT
TGCATCTAGTAGACAAAAATCTTACACTGACCTAAAAATAAAGAGTATCGAGTTTAAAATTGGTG
ATAAAGTATTTCTAAAGGTTTCAACTTGGAAGAAAGTTCTGTGATTCGGTAGAAAAAGGAAGCAC
GGTCCAAGGTTCATTAGACAGTATGAAAGTCTGAAAAGAATTGGGCCTACAGCATACCGTTTAGC
CCTACC
Found at i:32740289 original size:30 final size:30
Alignment explanation
Indices: 32740225--32740296 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
32740215 AGAATGTCAC
* * *
32740225 CTTGTGTGAGCAACTCTATCATGACGTCAG
1 CTTGTGTGAGCAACCCTATCATGACATCAA
32740255 CTTGTGTGAGCAACCCTCAT-AT-ACTATCAA
1 CTTGTGTGAGCAACCCT-ATCATGAC-ATCAA
32740285 CTTGTGTGAGCA
1 CTTGTGTGAGCA
32740297 TCTTATTTCA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
29 2 0.05
30 33 0.89
31 2 0.05
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.31
Consensus pattern (30 bp):
CTTGTGTGAGCAACCCTATCATGACATCAA
Found at i:32742446 original size:39 final size:39
Alignment explanation
Indices: 32742387--32742499 Score: 172
Period size: 39 Copynumber: 2.9 Consensus size: 39
32742377 TTTTAATTGT
* *
32742387 TGTGATATATACGAATATTGTGATATATGCTTAAATATTA
1 TGTGAT-TATATGAGTATTGTGATATATGCTTAAATATTA
*
32742427 TGTGATTATATGAGTATTGTGATATATGCTTAAATTTTA
1 TGTGATTATATGAGTATTGTGATATATGCTTAAATATTA
* *
32742466 TGTGATTATATGTGTAATGTGATATATGCTTAAA
1 TGTGATTATATGAGTATTGTGATATATGCTTAAA
32742500 AGTGAATATG
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 62 0.91
40 6 0.09
ACGTcount: A:0.34, C:0.04, G:0.18, T:0.45
Consensus pattern (39 bp):
TGTGATTATATGAGTATTGTGATATATGCTTAAATATTA
Found at i:32745305 original size:10 final size:10
Alignment explanation
Indices: 32745290--32745321 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
32745280 GTGAGTGTTT
32745290 TTTATATTTA
1 TTTATATTTA
32745300 TTTATATTTA
1 TTTATATTTA
32745310 TTT-TATTT-
1 TTTATATTTA
32745318 TTTA
1 TTTA
32745322 AAAAGGGGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 3 0.14
9 5 0.24
10 13 0.62
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (10 bp):
TTTATATTTA
Found at i:32749179 original size:22 final size:22
Alignment explanation
Indices: 32749154--32749196 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
32749144 AACTTAATTC
*
32749154 ACATTTATTGATTGAATGTAAT
1 ACATTTATTAATTGAATGTAAT
32749176 ACATTTATTAATTGAATGTAA
1 ACATTTATTAATTGAATGTAA
32749197 AGGAGCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.44
Consensus pattern (22 bp):
ACATTTATTAATTGAATGTAAT
Found at i:32764002 original size:27 final size:26
Alignment explanation
Indices: 32763972--32764031 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
32763962 ACTTATTCAC
* *
32763972 TTTTCTTAAATTGATACTTTTATTTTT
1 TTTTCTTAAATTGATA-TCTAATTTTT
* *
32763999 TTTTCCTAAATTGTTATCTAATTTTT
1 TTTTCTTAAATTGATATCTAATTTTT
32764025 TTTTCTT
1 TTTTCTT
32764032 TCACTATATT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 14 0.50
27 14 0.50
ACGTcount: A:0.20, C:0.10, G:0.03, T:0.67
Consensus pattern (26 bp):
TTTTCTTAAATTGATATCTAATTTTT
Found at i:32765567 original size:264 final size:264
Alignment explanation
Indices: 32765097--32765889 Score: 1418
Period size: 264 Copynumber: 3.0 Consensus size: 264
32765087 CCTTTAAAAT
* * *
32765097 AATTTTAGCTCTGCGAATTTTGAGAAAAACAAGTTCGGGAGTCGGTTACGTACGAAGAAGAGTTA
1 AATTTTAGGTCTGCGAATTTTGAGAAAAACAAGTTCGGGAGTCGGTTACGCACGAGGAAGAGTTA
* *
32765162 GCACCCTCGTGACGCCCAAAATTGGTACCGAATTGATTATTTAATATTTTAATATCGAAATTTTA
66 GCACCCTCGTGACGCCCAAAATTGGTACCGAATTGATTATTTAATATCTTAATGTCGAAATTTTA
32765227 AAAAGATTTTAAAATACGATCTTTTTATTTTGAATAAAATGAATTGAATGATAAAGCTTATTTAT
131 AAAAGATTTTAAAATACGATCTTTTTATTTTGAATAAAATGAATTGAATGATAAAGCTTATTTAT
32765292 TTCAAAGAAATAAATTGTCATACTCAGTAAGTTAGAGTGCAACATTTCGAATCCTCAAAATTAAG
196 TTCAAAGAAATAAATTGTCATACTCAGTAAGTTAGAGTGCAACATTTCGAATCCTCAAAATTAAG
32765357 TTTG
261 TTTG
*
32765361 AATTTTAGGTCTGCGAATTTTGAGAAAAACAAGTTTGGGAGTCGGTTACGCACGAGGAAGAGTTA
1 AATTTTAGGTCTGCGAATTTTGAGAAAAACAAGTTCGGGAGTCGGTTACGCACGAGGAAGAGTTA
32765426 GCACCCTCGTGACGCCCAAAATTGGTACCGAATTGATTATTTAATATCTTAATGTCGAAATTTTA
66 GCACCCTCGTGACGCCCAAAATTGGTACCGAATTGATTATTTAATATCTTAATGTCGAAATTTTA
32765491 AAAAGATTTTAAAATACGATCTTTTTATTTTGAATAAAATGAATTGAATGATAAAGCTTATTTAT
131 AAAAGATTTTAAAATACGATCTTTTTATTTTGAATAAAATGAATTGAATGATAAAGCTTATTTAT
32765556 TTCAAAGAAATAAATTGTCATACTCAGTAAGTTAGAGTGCAACATTTCGAATCCTCAAAATTAAG
196 TTCAAAGAAATAAATTGTCATACTCAGTAAGTTAGAGTGCAACATTTCGAATCCTCAAAATTAAG
32765621 TTTG
261 TTTG
32765625 AATTTTAGGTCTGCGAATTTTGAGAAAAACAAGTTCGGGAGTCGGTTACGCACGAGGAAGAGTTA
1 AATTTTAGGTCTGCGAATTTTGAGAAAAACAAGTTCGGGAGTCGGTTACGCACGAGGAAGAGTTA
* * *
32765690 GCATCCTCGTGACGCCCAAAATTGGTACTGAATTG---A-TT-A-ATCTTAATGTCGAAATTTTG
66 GCACCCTCGTGACGCCCAAAATTGGTACCGAATTGATTATTTAATATCTTAATGTCGAAATTTTA
* * *
32765749 AAAAGTTTTTAAAATACGATCTTTTTATTTTGAATAAAATGAATTGGATGATAAAGCTCATTTAT
131 AAAAGATTTTAAAATACGATCTTTTTATTTTGAATAAAATGAATTGAATGATAAAGCTTATTTAT
*
32765814 TTCAAAGAAATAAATTGTCATACTCAGTAAGTTAGAGTGCAACATTTCGAATCCTCAAAATTAAA
196 TTCAAAGAAATAAATTGTCATACTCAGTAAGTTAGAGTGCAACATTTCGAATCCTCAAAATTAAG
32765879 TTTG
261 TTTG
*
32765883 ACTTTTA
1 AATTTTA
32765890 AAACCTATAC
Statistics
Matches: 514, Mismatches: 15, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
258 155 0.30
259 1 0.00
260 2 0.00
261 1 0.00
264 355 0.69
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (264 bp):
AATTTTAGGTCTGCGAATTTTGAGAAAAACAAGTTCGGGAGTCGGTTACGCACGAGGAAGAGTTA
GCACCCTCGTGACGCCCAAAATTGGTACCGAATTGATTATTTAATATCTTAATGTCGAAATTTTA
AAAAGATTTTAAAATACGATCTTTTTATTTTGAATAAAATGAATTGAATGATAAAGCTTATTTAT
TTCAAAGAAATAAATTGTCATACTCAGTAAGTTAGAGTGCAACATTTCGAATCCTCAAAATTAAG
TTTG
Found at i:32768062 original size:3 final size:3
Alignment explanation
Indices: 32768054--32768078 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
32768044 AATGGACTAT
32768054 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
32768079 ATTTTTATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:32768459 original size:100 final size:100
Alignment explanation
Indices: 32768337--32769111 Score: 1149
Period size: 100 Copynumber: 7.7 Consensus size: 100
32768327 TAACTCATAA
* * * * * * *
32768337 CTTTAAT-TTGTTTAACTGCAATGTCGGGGAAGTAAGATTCGCAGTTGTAGCTTCAATCTATTCC
1 CTTTAATCTT-TTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
* * * * * *
32768401 ACTACACCGCTAGGGAAGTGAGATTTGCAGTTGTGG
65 ACTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
* * *
32768437 CTTTAATCTTTTTAACTGCAATGTCGAGGAAGCGAGATTCACCGATGTGACTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
*
32768502 CTGCACCGCCAGGAAAGTAAGATTCGCTGTTGTAG
66 CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
* *
32768537 CTTTTATAT-TTTTTAACTGCAATGTCGGGTAAGCAAGATTCACTGATGTGGCTTTAATCTGTTC
1 C-TTTA-ATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTC
*
32768601 CACTGCACCGCCAGGGAAATAAGATTCGCTGTTGTAG
64 CACTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
* *
32768638 CTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGATTCACCGATGTGGCTTTAATCTGCTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* * * * * *
32768703 CTGTATCACCTGGGGAGTAAGATTTGCTGTTGTAG
66 CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
*
32768738 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCGAGATTCACCGATGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
*
32768803 CTGCACCGCCAGGGAAGTAAGATTCACTGTTGTAG
66 CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
*
32768838 CTTTAATCTTTTTAACTGCAATGTCGGGTAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* * * *
32768903 CTGCACCGCTAGGGAAATAAGATTCACTGTGGTAG
66 CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
*
32768938 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAACCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* * *
32769003 CTGCACTGCCAGGGAAGTAAGATTCGTTGTGGTAG
66 CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
*
32769038 CTTTAATCTTTTTAACTGCAATGTCGGAGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
32769103 CTGCACCGC
66 CTGCACCGC
32769112 TTGAGAAGTA
Statistics
Matches: 611, Mismatches: 60, Indels: 8
0.90 0.09 0.01
Matches are distributed among these distances:
99 2 0.00
100 515 0.84
101 92 0.15
102 2 0.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (100 bp):
CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
Found at i:32768468 original size:50 final size:50
Alignment explanation
Indices: 32768337--32769096 Score: 441
Period size: 50 Copynumber: 15.2 Consensus size: 50
32768327 TAACTCATAA
* * *
32768337 CTTTAAT-TTGTTTAACTGCAATGTCGGGGAAGTAAGATTCGCAGTTGTAG
1 CTTTAATCTT-TTTAACTGCAATGTCGAGGAAGTAAGATTCACTGTTGTAG
* * ** * ** * * ** * *
32768387 CTTCAATCTATTCCACTACACCG-CTAGGGAAGTGAGATTTGCAGTTGTGG
1 CTTTAATCTTTTTAACTGCAATGTCGA-GGAAGTAAGATTCACTGTTGTAG
** * *
32768437 CTTTAATCTTTTTAACTGCAATGTCGAGGAAGCGAGATTCACCGATGT-G
1 CTTTAATCTTTTTAACTGCAATGTCGAGGAAGTAAGATTCACTGTTGTAG
* ** ** * *
32768486 ACTTTAATCTGTTCCACTGCACCG-CCAGGAAAGTAAGATTCGCTGTTGTAG
1 -CTTTAATCTTTTTAACTGCAATGTCGAGG-AAGTAAGATTCACTGTTGTAG
* * *
32768537 CTTTTATAT-TTTTTAACTGCAATGTCG-GGTAAGCAAGATTCACTGATGTGG
1 C-TTTA-ATCTTTTTAACTGCAATGTCGAGG-AAGTAAGATTCACTGTTGTAG
* ** ** * * *
32768588 CTTTAATCTGTTCCACTGCACCG-CCAGGGAAATAAGATTCGCTGTTGTAG
1 CTTTAATCTTTTTAACTGCAATGTCGA-GGAAGTAAGATTCACTGTTGTAG
* * * *
32768638 CTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGATTCACCGATGTGG
1 CTTTAATCTTTTTAACTGCAATGTCGAGGAAGTAAGATTCACTGTTGTAG
** ** * ** * **
32768688 CTTTAATCTGCTCCACTG-TATCACCTG-GGGAGTAAGATTTGCTGTTGTAG
1 CTTTAATCTTTTTAACTGCAAT-GTC-GAGGAAGTAAGATTCACTGTTGTAG
* ** * * *
32768738 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCGAGATTCACCGATGTGG
1 CTTTAATCTTTTTAACTGCAATGTCGAGGAAGTAAGATTCACTGTTGTAG
* ** ** *
32768788 CTTTAATCTGTTCCACTGCACCG-CCAGGGAAGTAAGATTCACTGTTGTAG
1 CTTTAATCTTTTTAACTGCAATGTCGA-GGAAGTAAGATTCACTGTTGTAG
* * * *
32768838 CTTTAATCTTTTTAACTGCAATGTCG-GGTAAGCAAGATTCACCGATGTGG
1 CTTTAATCTTTTTAACTGCAATGTCGAGG-AAGTAAGATTCACTGTTGTAG
* ** ** * * *
32768888 CTTTAATCTGTTCCACTGCACCG-CTAGGGAAATAAGATTCACTGTGGTAG
1 CTTTAATCTTTTTAACTGCAATGTCGA-GGAAGTAAGATTCACTGTTGTAG
* * * * *
32768938 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGG
1 CTTTAATCTTTTTAACTGCAATGTCGAGGAAGTAAGATTCACTGTTGTAG
* * ** * * ** *
32768988 CTTTAACCTGTTCCACTGCACTG-CCAGGGAAGTAAGATTCGTTGTGGTAG
1 CTTTAATCTTTTTAACTGCAATGTCGA-GGAAGTAAGATTCACTGTTGTAG
* * * *
32769038 CTTTAATCTTTTTAACTGCAATGTCG-GAGAAGCAAGATTCACCGATGTGG
1 CTTTAATCTTTTTAACTGCAATGTCGAG-GAAGTAAGATTCACTGTTGTAG
32769088 CTTTAATCT
1 CTTTAATCT
32769097 GTTCCACTGC
Statistics
Matches: 511, Mismatches: 173, Indels: 52
0.69 0.24 0.07
Matches are distributed among these distances:
49 18 0.04
50 440 0.86
51 50 0.10
52 3 0.01
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (50 bp):
CTTTAATCTTTTTAACTGCAATGTCGAGGAAGTAAGATTCACTGTTGTAG
Found at i:32769106 original size:50 final size:49
Alignment explanation
Indices: 32768432--32769107 Score: 487
Period size: 50 Copynumber: 13.5 Consensus size: 49
32768422 GATTTGCAGT
* * * *
32768432 TGTGGCTTTAATCTTTTTAACTGCAATGTCGAGGAAGCGAGATTCACCGA
1 TGTGGCTTTAATCTGTTCAACTGCAATGTCG-GGAAGCAAGATTCACTGA
* * ** * * * * *
32768482 TGTGACTTTAATCTGTTCCACTGCACCGCCAGGAAAGTAAGATTCGCTGT
1 TGTGGCTTTAATCTGTTCAACTGCAATGTC-GGGAAGCAAGATTCACTGA
* * *
32768532 TGTAGCTTTTATAT-TTTTTAACTGCAATGTCGGGTAAGCAAGATTCACTGA
1 TGTGGC-TTTA-ATCTGTTCAACTGCAATGTCGGG-AAGCAAGATTCACTGA
* ** * ** * *
32768583 TGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGAAATAAGATTCGCTGT
1 TGTGGCTTTAATCTGTTCAACTGCAATGTC-GGGAAGCAAGATTCACTGA
* * * *
32768633 TGTAGCTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGATTCACCGA
1 TGTGGCTTTAATCTGTTCAACTGCAATGTCG-GGAAGCAAGATTCACTGA
* * * ** * * ** *
32768683 TGTGGCTTTAATCTGCTCCACTG-TATCACCTGGGGAGTAAGATTTGCTGT
1 TGTGGCTTTAATCTGTTCAACTGCAAT-GTC-GGGAAGCAAGATTCACTGA
* * * * *
32768733 TGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCGAGATTCACCGA
1 TGTGGCTTTAATCTGTTCAACTGCAATGTC-GGGAAGCAAGATTCACTGA
* ** * * *
32768783 TGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCACTGT
1 TGTGGCTTTAATCTGTTCAACTGCAATGTC-GGGAAGCAAGATTCACTGA
* * * *
32768833 TGTAGCTTTAATCTTTTTAACTGCAATGTCGGGTAAGCAAGATTCACCGA
1 TGTGGCTTTAATCTGTTCAACTGCAATGTCGGG-AAGCAAGATTCACTGA
* ** * **
32768883 TGTGGCTTTAATCTGTTCCACTGCACCGCTAGGGAAATAAGATTCACTG-
1 TGTGGCTTTAATCTGTTCAACTGCAATG-TCGGGAAGCAAGATTCACTGA
* * * *
32768932 TGGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGA
1 T-GTGGCTTTAATCTGTTCAACTGCAATGTC-GGGAAGCAAGATTCACTGA
* * * * * **
32768983 TGTGGCTTTAACCTGTTCCACTGCACTGCCAGGGAAGTAAGATTCGTTG-
1 TGTGGCTTTAATCTGTTCAACTGCAATGTC-GGGAAGCAAGATTCACTGA
* * * *
32769032 TGGTAGCTTTAATCTTTTTAACTGCAATGTCGGAGAAGCAAGATTCACCGA
1 T-GTGGCTTTAATCTGTTCAACTGCAATGTCGG-GAAGCAAGATTCACTGA
*
32769083 TGTGGCTTTAATCTGTTCCACTGCA
1 TGTGGCTTTAATCTGTTCAACTGCA
32769108 CCGCTTGAGA
Statistics
Matches: 461, Mismatches: 147, Indels: 36
0.72 0.23 0.06
Matches are distributed among these distances:
49 13 0.03
50 400 0.87
51 46 0.10
52 2 0.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.33
Consensus pattern (49 bp):
TGTGGCTTTAATCTGTTCAACTGCAATGTCGGGAAGCAAGATTCACTGA
Found at i:32770353 original size:42 final size:42
Alignment explanation
Indices: 32770270--32770353 Score: 96
Period size: 42 Copynumber: 2.0 Consensus size: 42
32770260 GGTATAACAA
* **
32770270 GATCACCACATGCCCCAATCTGATCAAAATTTGAATTGCTCT
1 GATCACCACATGACCCAATCTGATCAAAATTTGAACCGCTCT
* * * * *
32770312 GATCACCTCATGATCCATTCTGATCAATATTTGAGCCGCTCT
1 GATCACCACATGACCCAATCTGATCAAAATTTGAACCGCTCT
32770354 TTTTGGGTTT
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (42 bp):
GATCACCACATGACCCAATCTGATCAAAATTTGAACCGCTCT
Found at i:32770435 original size:7 final size:7
Alignment explanation
Indices: 32770423--32770477 Score: 94
Period size: 7 Copynumber: 7.9 Consensus size: 7
32770413 TAGCCTCTCT
32770423 ATTTTTC
1 ATTTTTC
32770430 ATTTTTC
1 ATTTTTC
32770437 ATTTTTC
1 ATTTTTC
32770444 ATTTTTC
1 ATTTTTC
32770451 ATTTTTC
1 ATTTTTC
32770458 A-TTTTC
1 ATTTTTC
32770464 ATTTTTCC
1 ATTTTT-C
32770472 ATTTTT
1 ATTTTT
32770478 TTTGTTTCTC
Statistics
Matches: 46, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
6 6 0.13
7 33 0.72
8 7 0.15
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.71
Consensus pattern (7 bp):
ATTTTTC
Found at i:32778555 original size:8 final size:9
Alignment explanation
Indices: 32778534--32778558 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
32778524 TAACCCTAAT
32778534 TTTTTATGA
1 TTTTTATGA
32778543 TTTTTATGA
1 TTTTTATGA
32778552 TTTTTAT
1 TTTTTAT
32778559 TATATGTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.20, C:0.00, G:0.08, T:0.72
Consensus pattern (9 bp):
TTTTTATGA
Found at i:32779190 original size:5 final size:5
Alignment explanation
Indices: 32779180--32779205 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
32779170 TGAGCATTCG
32779180 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
32779206 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:32779315 original size:21 final size:21
Alignment explanation
Indices: 32779269--32779315 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
32779259 TGAAGTTTTC
*
32779269 TCGAA-TCGAGTCGAGTGAGA
1 TCGAATTCGAGTCGAATGAGA
*
32779289 TGGAATTCGAGTCGAATCGA-A
1 TCGAATTCGAGTCGAAT-GAGA
32779310 TCGAAT
1 TCGAAT
32779316 ATATTTGTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 4 0.18
21 16 0.73
22 2 0.09
ACGTcount: A:0.32, C:0.15, G:0.30, T:0.23
Consensus pattern (21 bp):
TCGAATTCGAGTCGAATGAGA
Found at i:32779996 original size:30 final size:31
Alignment explanation
Indices: 32779957--32780016 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
32779947 AGAGGTGAGA
*
32779957 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
* *
32779988 TGGG-AGGGAGTAAAAATTTTTGGGGAAAA
1 TGGGAAGGGAATAAAAATTTTAGGGGAAAA
32780017 TAAAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.40, C:0.00, G:0.38, T:0.22
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTAGGGGAAAAG
Found at i:32784518 original size:7 final size:8
Alignment explanation
Indices: 32784484--32784523 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
32784474 AAAATGAGAG
32784484 AAAAAG-A
1 AAAAAGAA
*
32784491 AAGAAGAA
1 AAAAAGAA
32784499 AAAAAGAA
1 AAAAAGAA
32784507 AAAAAGAA
1 AAAAAGAA
*
32784515 AAAAGGAA
1 AAAAAGAA
32784523 A
1 A
32784524 TATGGATGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
7 5 0.17
8 24 0.83
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (8 bp):
AAAAAGAA
Found at i:32785427 original size:6 final size:6
Alignment explanation
Indices: 32785416--32785507 Score: 66
Period size: 6 Copynumber: 15.5 Consensus size: 6
32785406 TAAAAAAAAT
* **
32785416 AATCAA AATCAA AATCAA AATCAA AATCAA AA-AAA GAAAAAA AATCAA
1 AATCAA AATCAA AATCAA AATCAA AATCAA AATCAA -AATCAA AATCAA
* * **
32785464 AGTCAA AAGCAAA AAAGAGA AATC-- AATCAA AATCAA AAT-AA AAT
1 AATCAA AATC-AA AATCA-A AATCAA AATCAA AATCAA AATCAA AAT
32785508 ATGAAAAGAG
Statistics
Matches: 70, Mismatches: 10, Indels: 13
0.75 0.11 0.14
Matches are distributed among these distances:
4 4 0.06
5 7 0.10
6 49 0.70
7 10 0.14
ACGTcount: A:0.70, C:0.12, G:0.05, T:0.13
Consensus pattern (6 bp):
AATCAA
Found at i:32785462 original size:30 final size:31
Alignment explanation
Indices: 32785426--32785506 Score: 105
Period size: 30 Copynumber: 2.7 Consensus size: 31
32785416 AATCAAAATC
32785426 AAAATCAAAATCAAAATCAAAAAAAGA-AAA
1 AAAATCAAAATCAAAATCAAAAAAAGAGAAA
* *
32785456 AAAATCAAAGTCAAAAGC-AAAAAAGAGAAA
1 AAAATCAAAATCAAAATCAAAAAAAGAGAAA
**
32785486 TCAATCAAAATCAAAAT-AAAA
1 AAAATCAAAATCAAAATCAAAA
32785507 TATGAAAAGA
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
29 8 0.19
30 35 0.81
ACGTcount: A:0.72, C:0.11, G:0.06, T:0.11
Consensus pattern (31 bp):
AAAATCAAAATCAAAATCAAAAAAAGAGAAA
Found at i:32786388 original size:7 final size:7
Alignment explanation
Indices: 32786376--32786429 Score: 85
Period size: 7 Copynumber: 8.0 Consensus size: 7
32786366 TCTGAGTCAA
32786376 AAAAATG
1 AAAAATG
32786383 AAAAATG
1 AAAAATG
*
32786390 -AGAATG
1 AAAAATG
32786396 AAAAATG
1 AAAAATG
32786403 AAAAATG
1 AAAAATG
32786410 -AAAATG
1 AAAAATG
32786416 AAAAATG
1 AAAAATG
32786423 AAAAATG
1 AAAAATG
32786430 GAGAGGCTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
6 11 0.26
7 32 0.74
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.15
Consensus pattern (7 bp):
AAAAATG
Found at i:32786397 original size:13 final size:14
Alignment explanation
Indices: 32786376--32786429 Score: 85
Period size: 13 Copynumber: 4.0 Consensus size: 14
32786366 TCTGAGTCAA
32786376 AAAAATGAAAAATG
1 AAAAATGAAAAATG
*
32786390 -AGAATGAAAAATG
1 AAAAATGAAAAATG
32786403 AAAAATG-AAAATG
1 AAAAATGAAAAATG
32786416 AAAAATGAAAAATG
1 AAAAATGAAAAATG
32786430 GAGAGGCTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
13 25 0.69
14 11 0.31
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.15
Consensus pattern (14 bp):
AAAAATGAAAAATG
Found at i:32786399 original size:20 final size:20
Alignment explanation
Indices: 32786376--32786429 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
32786366 TCTGAGTCAA
*
32786376 AAAAATGAAAAATGAGAATG
1 AAAAATGAAAAATGAAAATG
32786396 AAAAATGAAAAATGAAAATG
1 AAAAATGAAAAATGAAAATG
32786416 AAAAATGAAAAATG
1 AAAAATGAAAAATG
32786430 GAGAGGCTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.15
Consensus pattern (20 bp):
AAAAATGAAAAATGAAAATG
Found at i:32787907 original size:43 final size:43
Alignment explanation
Indices: 32787814--32787942 Score: 102
Period size: 44 Copynumber: 3.0 Consensus size: 43
32787804 AGCAGTGGCG
* * * *
32787814 GAGCAGACTG-AGAAAACAAGTCTTATCCCCCTGAAG-TCACAGTA
1 GAGCAGACTGAAGAAGA-AA-TCTTATCTCCCT-AAGATTACAGCA
*
32787858 GGGCAGACTGAAGAAGAAATCTTATCTCCCTAAGATTACAGCA
1 GAGCAGACTGAAGAAGAAATCTTATCTCCCTAAGATTACAGCA
* * * * *
32787901 GAGCAGA-TGGAAGCTAGTAATCCTACCTCCCTGAGATTACAG
1 GAGCAGACT-GAAG-AAGAAATCTTATCTCCCTAAGATTACAG
32787943 TGGAGCGGAT
Statistics
Matches: 70, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
42 4 0.06
43 27 0.39
44 34 0.49
45 5 0.07
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (43 bp):
GAGCAGACTGAAGAAGAAATCTTATCTCCCTAAGATTACAGCA
Found at i:32788070 original size:44 final size:44
Alignment explanation
Indices: 32788005--32788089 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
32787995 ATCGCATCAG
* *
32788005 ATTGAAGCCAGAAATCTTATCTCCCTTAGATTACAGCGGAGCAA
1 ATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAGCAA
* * *
32788049 ATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAG
1 ATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAG
32788090 TGGATTAAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (44 bp):
ATTGAAGCCAGAAATCCTATCTCCCTGAGATTACAGCGGAGCAA
Found at i:32788128 original size:142 final size:142
Alignment explanation
Indices: 32787872--32788288 Score: 674
Period size: 142 Copynumber: 2.9 Consensus size: 142
32787862 AGACTGAAGA
* *
32787872 AGAAATCTTATCTCCCTAAGATTACAGCAGAGCAGATGGAAGCTAGTAATCCTACCTCCCTGAGA
1 AGAAATCTTATCTCCCTAAGATTACAGCGGAGCAGATGGAAGCTAGTAATCCTATCTCCCTGAGA
32787937 TTACAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAGGTTACAGTAGAGTAGATCGCAT
66 TTACAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAGGTTACAGTAGAGTAGATCGCAT
32788002 CAGATTGAAGCC-
131 CAGATTGAA-CCT
* * *
32788014 AGAAATCTTATCTCCCTTAGATTACAGCGGAGCAAATTGAAGCTAGTAATCCTATCTCCCTGAGA
1 AGAAATCTTATCTCCCTAAGATTACAGCGGAGCAGATGGAAGCTAGTAATCCTATCTCCCTGAGA
* * * *
32788079 TTACAGTGGAGTGGATTAAAATAAAGGATCTTACCTCTCTGAGGTTACAGTAGAGTAGATCACAT
66 TTACAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAGGTTACAGTAGAGTAGATCGCAT
32788144 CAGATTGAACCT
131 CAGATTGAACCT
* * *
32788156 AGAAATCTTATCTCCCTGAGATTACAACGGAGCAGATGGAAGCTAGTAATCCTATCTCCTTGAGA
1 AGAAATCTTATCTCCCTAAGATTACAGCGGAGCAGATGGAAGCTAGTAATCCTATCTCCCTGAGA
* * * *
32788221 TTACAGTGGAGCGGATTAAAATAAAAGATTTTATCTCTCTAAAGTTACAGTAGAGTAGATCGTAT
66 TTACAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAGGTTACAGTAGAGTAGATCGCAT
32788286 CAG
131 CAG
32788289 GTCTTATCCC
Statistics
Matches: 252, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
141 2 0.01
142 250 0.99
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.27
Consensus pattern (142 bp):
AGAAATCTTATCTCCCTAAGATTACAGCGGAGCAGATGGAAGCTAGTAATCCTATCTCCCTGAGA
TTACAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAGGTTACAGTAGAGTAGATCGCAT
CAGATTGAACCT
Found at i:32788508 original size:100 final size:100
Alignment explanation
Indices: 32788360--32788613 Score: 366
Period size: 100 Copynumber: 2.5 Consensus size: 100
32788350 CGATATAGTT
* **
32788360 GAACAGAATAAAGCCACAAT-GACGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGC
1 GAACAGATTAAAGCCAC-ATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGC
* * * *
32788424 TATAACAGCGAATCTTACTTCTCAAGCGGTGCAGTG
65 TACAACAGCGAATCTTACTTCCCAGGCGATGCAGTG
* *
32788460 GAACAGATTAAAGCCACATCGGTGAATCTTTCTTCCCCGACATTGCAGTTCAAAAGATTAAAGCT
1 GAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCT
*
32788525 ACAACAGCGAATCTTACCTCCCAGGCGATGCAGTG
66 ACAACAGCGAATCTTACTTCCCAGGCGATGCAGTG
* * *
32788560 GAGCAGATTAAAGCCACATTGGTGAATCTTGCATCCCCGACATTGCAGATTAAA
1 GAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAG-TTAAA
32788614 GCCACAGCGG
Statistics
Matches: 137, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
99 2 0.01
100 131 0.96
101 4 0.03
ACGTcount: A:0.34, C:0.24, G:0.19, T:0.23
Consensus pattern (100 bp):
GAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAAAGCT
ACAACAGCGAATCTTACTTCCCAGGCGATGCAGTG
Found at i:32788587 original size:50 final size:50
Alignment explanation
Indices: 32788360--32788885 Score: 263
Period size: 50 Copynumber: 10.7 Consensus size: 50
32788350 CGATATAGTT
* * ** * * * *
32788360 GAACAGAATAAAGCCACAATGACGAATCTTGCTTCCCCGAC-ATTGCAGTT
1 GAACAGATTAAAGCCACAACGGTGAATCTTACTTCCCAGGCGA-TGCAGTG
* * * * * * * * *
32788410 AAAAAGATTAAAGCTATAACAGCGAATCTTACTTCTCAAGCGGTGCAGTG
1 GAACAGATTAAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGTG
* * * * *
32788460 GAACAGATTAAAGCCACATCGGTGAATCTTTCTTCCCCGAC-ATTGCAGTT
1 GAACAGATTAAAGCCACAACGGTGAATCTTACTTCCCAGGCGA-TGCAGTG
* * * * * *
32788510 CAAAAGATTAAAGCTACAACAGCGAATCTTACCTCCCAGGCGATGCAGTG
1 GAACAGATTAAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGTG
* ** * * *
32788560 GAGCAGATTAAAGCCACATTGGTGAATCTTGCATCCC---CGA--CA-TT
1 GAACAGATTAAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGTG
* * ** *
32788604 G--CAGATTAAAGCCACAGCGGTGAATCCTACTTCCTTGGCGATGCTGTG
1 GAACAGATTAAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGTG
* * *
32788652 GAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCTC-GAC-ATTGCAGTT
1 GAACAGATTAAAGCCACAACGGTGAATCTTACTTCC-CAGGCGA-TGCAGTG
* * * * ** * * * *
32788702 AAAAAGACTAAAGCCACAGCGACGAGTATTACTTCCCTGGCAATGCAGTG
1 GAACAGATTAAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGTG
* * * *
32788752 AAATAGATTAAAGCCACAACGGTGAATCTTGCTTTCCC-GAC-ATTGCAGT-
1 GAACAGATTAAAGCCACAACGGTGAATCTTAC-TTCCCAGGCGA-TGCAGTG
* * * * ** * * * *
32788801 TAAAAGGATTAAAGTCACAATGACGAATCTTACTTCTCAAGAGGTGCAGTG
1 GAACA-GATTAAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGTG
* * *
32788852 GAACAGATTGAAGCCACAATGGCGAATCTTACTT
1 GAACAGATTAAAGCCACAACGGTGAATCTTACTT
32788886 TCCAAAAGTT
Statistics
Matches: 352, Mismatches: 103, Indels: 42
0.71 0.21 0.08
Matches are distributed among these distances:
42 28 0.08
44 2 0.01
45 5 0.01
47 4 0.01
48 2 0.01
49 10 0.03
50 291 0.83
51 10 0.03
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.24
Consensus pattern (50 bp):
GAACAGATTAAAGCCACAACGGTGAATCTTACTTCCCAGGCGATGCAGTG
Found at i:32788750 original size:192 final size:191
Alignment explanation
Indices: 32788457--32788804 Score: 500
Period size: 192 Copynumber: 1.8 Consensus size: 191
32788447 AAGCGGTGCA
* * * *
32788457 GTGGAACAGATTAAAGCCACATCGGTGAATCTTTCTTCCCCGACATTGCAGTTCAAAAGATTAAA
1 GTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGACTAAA
* * * * * **
32788522 GCTACAACAGCGAATCTTACCTCCCAGGCGATGCAGTGGAGCAGATTAAAGCCACATTGGTGAAT
66 GCCACAACAGCGAATATTACCTCCCAGGCAATGCAGTGAAACAGATTAAAGCCACAACGGTGAAT
32788587 CTTGCATCCCCGACATTGCAGATTAAAGCCACAGCGGTGAATCCTACTTCCTTGGCGATGCT
131 CTTGCATCCCCGACATTGCAG-TTAAAGCCACAGCGGTGAATCCTACTTCCTTGGCGATGCT
*
32788649 GTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCTCGACATTGCAGTTAAAAAGACTAAA
1 GTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGACTAAA
* * * * *
32788714 GCCACAGC-GACGAGTATTACTTCCCTGGCAATGCAGTGAAATAGATTAAAGCCACAACGGTGAA
66 GCCACAACAG-CGAATATTACCTCCCAGGCAATGCAGTGAAACAGATTAAAGCCACAACGGTGAA
* *
32788778 TCTTGCTTTCCCGACATTGCAGTTAAA
130 TCTTGCATCCCCGACATTGCAGTTAAA
32788805 AGGATTAAAG
Statistics
Matches: 136, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
191 6 0.04
192 130 0.96
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (191 bp):
GTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGACTAAA
GCCACAACAGCGAATATTACCTCCCAGGCAATGCAGTGAAACAGATTAAAGCCACAACGGTGAAT
CTTGCATCCCCGACATTGCAGTTAAAGCCACAGCGGTGAATCCTACTTCCTTGGCGATGCT
Found at i:32788783 original size:100 final size:100
Alignment explanation
Indices: 32788631--32788888 Score: 295
Period size: 100 Copynumber: 2.6 Consensus size: 100
32788621 CGGTGAATCC
* * * *
32788631 TACTTCCTTGGCGATGCTGTGGAACAGATTAAAGCCACAACGGTGAATCTTGC-TTCCTCGACAT
1 TACTTCCCTGGCAATGCAGTGAAACAGATTAAAGCCACAACGGTGAATCTTGCTTTCC-CGACAT
32788695 TGCAGTTAAAAAGACTAAAGCCACAGCGACGAGTAT
65 TGCAGTTAAAAAGACTAAAGCCACAGCGACGAGTAT
*
32788731 TACTTCCCTGGCAATGCAGTGAAATAGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGACATT
1 TACTTCCCTGGCAATGCAGTGAAACAGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGACATT
* * * ** * *
32788796 GCAGTTAAAAGGATTAAAGTCACAATGACGAATCT
66 GCAGTTAAAAAGACTAAAGCCACAGCGACGAGTAT
* ** * * * * * *
32788831 TACTTCTCAAG-AGGTGCAGTGGAACAGATTGAAGCCACAATGGCGAATCTTACTTTCC
1 TACTTCCCTGGCA-ATGCAGTGAAACAGATTAAAGCCACAACGGTGAATCTTGCTTTCC
32788889 AAAAGTTACA
Statistics
Matches: 134, Mismatches: 22, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
99 1 0.01
100 129 0.96
101 4 0.03
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (100 bp):
TACTTCCCTGGCAATGCAGTGAAACAGATTAAAGCCACAACGGTGAATCTTGCTTTCCCGACATT
GCAGTTAAAAAGACTAAAGCCACAGCGACGAGTAT
Found at i:32793927 original size:12 final size:12
Alignment explanation
Indices: 32793910--32793938 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
32793900 AAAAAAATAA
32793910 AAAAATTATTTT
1 AAAAATTATTTT
32793922 AAAAA-TATTTT
1 AAAAATTATTTT
32793933 AAAAAT
1 AAAAAT
32793939 AAAAAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
AAAAATTATTTT
Found at i:32800565 original size:58 final size:59
Alignment explanation
Indices: 32800489--32800607 Score: 154
Period size: 58 Copynumber: 2.0 Consensus size: 59
32800479 TTGAAATTAG
* * * *
32800489 TTAAACTCCATAAAACCTTCGAGTTTACAGC-GAAATATCA-AAACTGCTTAATATACAC
1 TTAAACTACATAAAACCTTCGAGTTAACAGCAGAAA-ATCAGAAACTGCTTAAAACACAC
*
32800547 TTAAACTACA-AAGAACCTTCGAGTTAACAGCAGAAAATCAGATACTGCTTAAAACACAC
1 TTAAACTACATAA-AACCTTCGAGTTAACAGCAGAAAATCAGAAACTGCTTAAAACACAC
32800606 TT
1 TT
32800608 GATTCTGTTA
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
57 2 0.04
58 30 0.57
59 21 0.40
ACGTcount: A:0.43, C:0.22, G:0.10, T:0.25
Consensus pattern (59 bp):
TTAAACTACATAAAACCTTCGAGTTAACAGCAGAAAATCAGAAACTGCTTAAAACACAC
Found at i:32816333 original size:51 final size:51
Alignment explanation
Indices: 32816269--32816386 Score: 182
Period size: 51 Copynumber: 2.3 Consensus size: 51
32816259 TATTAGCAAG
* *
32816269 GAGTTCGCCAGTGTTTTGGTGGAGTTGATGATTATCAGAAGGATCGGTAAA
1 GAGTTCGCTAGTGTTTTGGTGGAGTTGATGACTATCAGAAGGATCGGTAAA
* * * *
32816320 GAGTTTGCTAGTGTTTTGGTGGAGTTGATGACTGTTAGAAGGATCGGTAAG
1 GAGTTCGCTAGTGTTTTGGTGGAGTTGATGACTATCAGAAGGATCGGTAAA
32816371 GAGTTCGCTAGTGTTT
1 GAGTTCGCTAGTGTTT
32816387 GGGCGAACTA
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 60 1.00
ACGTcount: A:0.22, C:0.08, G:0.35, T:0.35
Consensus pattern (51 bp):
GAGTTCGCTAGTGTTTTGGTGGAGTTGATGACTATCAGAAGGATCGGTAAA
Found at i:32816531 original size:27 final size:27
Alignment explanation
Indices: 32816467--32816557 Score: 67
Period size: 27 Copynumber: 3.4 Consensus size: 27
32816457 TTGGTTTGGT
* *
32816467 GAGTTGGGGTTCGCCAGTGTGTTTAGC
1 GAGTTGGGGTTCGCCAGTCTATTTAGC
* ** *
32816494 GAGCTAAGGTTCTCCAGTCTATTTAGC
1 GAGTTGGGGTTCGCCAGTCTATTTAGC
* * * *
32816521 TAGTTGGGGTTTGCTAGT-TGTTTAGGC
1 GAGTTGGGGTTCGCCAGTCTATTTA-GC
*
32816548 GAGCTGGGGT
1 GAGTTGGGGT
32816558 GTAACACCCC
Statistics
Matches: 47, Mismatches: 16, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
26 5 0.11
27 42 0.89
ACGTcount: A:0.14, C:0.14, G:0.36, T:0.35
Consensus pattern (27 bp):
GAGTTGGGGTTCGCCAGTCTATTTAGC
Found at i:32818447 original size:27 final size:27
Alignment explanation
Indices: 32818397--32818450 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
32818387 ACATAAGGTC
*
32818397 ATAACAGTCATTTCATCTCTTAGGGGT
1 ATAACAGTCATTTCATCCCTTAGGGGT
*
32818424 ATAACAGTCATTTTA-CCCTATAGGGGT
1 ATAACAGTCATTTCATCCCT-TAGGGGT
32818451 TGTCAAAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 3 0.12
27 21 0.88
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (27 bp):
ATAACAGTCATTTCATCCCTTAGGGGT
Found at i:32819848 original size:18 final size:18
Alignment explanation
Indices: 32819822--32819867 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
32819812 GTATAACAAT
*
32819822 ATAAAAATGACAAGGATA
1 ATAATAATGACAAGGATA
* *
32819840 ATAATAATGGCAATGATA
1 ATAATAATGACAAGGATA
32819858 ATAATAATGA
1 ATAATAATGA
32819868 TAATAATAAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.57, C:0.04, G:0.15, T:0.24
Consensus pattern (18 bp):
ATAATAATGACAAGGATA
Found at i:32819866 original size:12 final size:12
Alignment explanation
Indices: 32819851--32819876 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32819841 TAATAATGGC
32819851 AATGATAATAAT
1 AATGATAATAAT
32819863 AATGATAATAAT
1 AATGATAATAAT
32819875 AA
1 AA
32819877 CCAAAAGGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (12 bp):
AATGATAATAAT
Found at i:32820526 original size:21 final size:21
Alignment explanation
Indices: 32820500--32820543 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
32820490 ATAGAAAATC
* *
32820500 AAAAAACTGG-AGAAAGAAAG
1 AAAAAAATGGAAGAAAAAAAG
32820520 AAAAAAATGGAAGAAAAAAAG
1 AAAAAAATGGAAGAAAAAAAG
32820541 AAA
1 AAA
32820544 GATTGAATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.73, C:0.02, G:0.20, T:0.05
Consensus pattern (21 bp):
AAAAAAATGGAAGAAAAAAAG
Found at i:32821063 original size:27 final size:27
Alignment explanation
Indices: 32821009--32821214 Score: 270
Period size: 27 Copynumber: 7.7 Consensus size: 27
32820999 TATTTTGGTT
* * *
32821009 ATTTTACCCTAT-GGGCTATTTTGGTC
1 ATTTTACCCTATGGGGGTATTTCGATC
**
32821035 ATTTTACTGTATGGGGGTATTTCGATC
1 ATTTTACCCTATGGGGGTATTTCGATC
32821062 ATTTTACCCTATGGGGGTATTTCGATC
1 ATTTTACCCTATGGGGGTATTTCGATC
** * * *
32821089 ATTTTACCCTATAAGGGTATTACGGTT
1 ATTTTACCCTATGGGGGTATTTCGATC
* *
32821116 ATTTTACCATATGGGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTTCGATC
*
32821143 ATTTTACCCTATGGGGGTATTTCGACC
1 ATTTTACCCTATGGGGGTATTTCGATC
* *
32821170 ATTTTACTCTATGAGGGTATTTCGATC
1 ATTTTACCCTATGGGGGTATTTCGATC
32821197 ATTTTACCCTATGGGGGT
1 ATTTTACCCTATGGGGGT
32821215 CTCGGTGCAG
Statistics
Matches: 154, Mismatches: 25, Indels: 1
0.86 0.14 0.01
Matches are distributed among these distances:
26 10 0.06
27 144 0.94
ACGTcount: A:0.19, C:0.17, G:0.22, T:0.42
Consensus pattern (27 bp):
ATTTTACCCTATGGGGGTATTTCGATC
Found at i:32823005 original size:47 final size:47
Alignment explanation
Indices: 32822942--32823035 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
32822932 TTTCTGAGAC
32822942 CATCACCGATGACCACATCCAAATCCTAACCACGAGGATTATCTGAA
1 CATCACCGATGACCACATCCAAATCCTAACCACGAGGATTATCTGAA
*
32822989 CATCACCGATGACCACATCCAAGTCCTAACCACGAGGATTATCTGAA
1 CATCACCGATGACCACATCCAAATCCTAACCACGAGGATTATCTGAA
32823036 ACACATAAGT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.35, C:0.32, G:0.14, T:0.19
Consensus pattern (47 bp):
CATCACCGATGACCACATCCAAATCCTAACCACGAGGATTATCTGAA
Found at i:32823341 original size:50 final size:50
Alignment explanation
Indices: 32823287--32823420 Score: 223
Period size: 50 Copynumber: 2.7 Consensus size: 50
32823277 ACACCATTTA
* *
32823287 TGGACAAGCCACCGCTAATTTGCAAATAAATTGCAACTAATAACACTTTG
1 TGGACAAGCCACCACTAATTTGCAAATAAATTGCAACTAATAACACCTTG
* *
32823337 TGGACAAGCCACCACTGATTTGCAAATAAACTGCAACTAATAACACCTTG
1 TGGACAAGCCACCACTAATTTGCAAATAAATTGCAACTAATAACACCTTG
*
32823387 TGGACAAGCCACCACTAATTTGCAGATAAATTGC
1 TGGACAAGCCACCACTAATTTGCAAATAAATTGC
32823421 CACATACTTC
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 77 1.00
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.24
Consensus pattern (50 bp):
TGGACAAGCCACCACTAATTTGCAAATAAATTGCAACTAATAACACCTTG
Found at i:32825008 original size:13 final size:13
Alignment explanation
Indices: 32824990--32825034 Score: 72
Period size: 13 Copynumber: 3.5 Consensus size: 13
32824980 TCTGATACTC
32824990 TGTTTTCAAGATA
1 TGTTTTCAAGATA
32825003 TGTTTTCAAGATA
1 TGTTTTCAAGATA
* *
32825016 TGTTTTTAAGCTA
1 TGTTTTCAAGATA
32825029 TGTTTT
1 TGTTTT
32825035 ATGCATGCTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.24, C:0.07, G:0.16, T:0.53
Consensus pattern (13 bp):
TGTTTTCAAGATA
Found at i:32825523 original size:21 final size:21
Alignment explanation
Indices: 32825498--32825538 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
32825488 CTAAGCCAAG
32825498 TTTTTAAGTATGATTTTAAAT
1 TTTTTAAGTATGATTTTAAAT
32825519 TTTTTAAGTATGATTTTAAA
1 TTTTTAAGTATGATTTTAAA
32825539 CAAGTACATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.10, T:0.56
Consensus pattern (21 bp):
TTTTTAAGTATGATTTTAAAT
Found at i:32826139 original size:17 final size:17
Alignment explanation
Indices: 32826106--32826139 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
32826096 AGTACTATTC
**
32826106 TTTGCGACCCCTTTATG
1 TTTGCGACCCCAGTATG
32826123 TTTGCGACCCCAGTATG
1 TTTGCGACCCCAGTATG
32826140 CATGTGAAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.29, G:0.21, T:0.35
Consensus pattern (17 bp):
TTTGCGACCCCAGTATG
Found at i:32828154 original size:15 final size:15
Alignment explanation
Indices: 32828134--32828167 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
32828124 TTTTGAAGCT
32828134 AAAAAAAAGCAAAAA
1 AAAAAAAAGCAAAAA
**
32828149 AAAAAATCGCAAAAA
1 AAAAAAAAGCAAAAA
32828164 AAAA
1 AAAA
32828168 TCGCAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.82, C:0.09, G:0.06, T:0.03
Consensus pattern (15 bp):
AAAAAAAAGCAAAAA
Found at i:32828177 original size:15 final size:15
Alignment explanation
Indices: 32828134--32828180 Score: 66
Period size: 13 Copynumber: 3.4 Consensus size: 15
32828124 TTTTGAAGCT
32828134 AAAAAAAA--GCAAA
1 AAAAAAAATCGCAAA
32828147 AAAAAAAATCGC--A
1 AAAAAAAATCGCAAA
32828160 AAAAAAAATCGCAAA
1 AAAAAAAATCGCAAA
32828175 AAAAAA
1 AAAAAA
32828181 GTTGCCTACC
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
13 21 0.70
15 9 0.30
ACGTcount: A:0.79, C:0.11, G:0.06, T:0.04
Consensus pattern (15 bp):
AAAAAAAATCGCAAA
Found at i:32842781 original size:5 final size:5
Alignment explanation
Indices: 32842773--32842797 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
32842763 AGATTACATT
32842773 AAATC AAATC AAATC AAATC AAATC
1 AAATC AAATC AAATC AAATC AAATC
32842798 TTTACAAGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (5 bp):
AAATC
Found at i:32846833 original size:15 final size:15
Alignment explanation
Indices: 32846813--32846843 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
32846803 GTTATGTAAG
32846813 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
32846828 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
32846843 T
1 T
32846844 ATGTTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:32851173 original size:15 final size:15
Alignment explanation
Indices: 32851153--32851183 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
32851143 GTTATGTAAG
32851153 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
32851168 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
32851183 T
1 T
32851184 ATGTTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:32856530 original size:14 final size:14
Alignment explanation
Indices: 32856513--32856540 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32856503 ATAAACAAAT
32856513 AAATAAATCAATAA
1 AAATAAATCAATAA
32856527 AAATAAATCAATAA
1 AAATAAATCAATAA
32856541 CATGCAAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.07, G:0.00, T:0.21
Consensus pattern (14 bp):
AAATAAATCAATAA
Found at i:32856720 original size:27 final size:26
Alignment explanation
Indices: 32856664--32856736 Score: 65
Period size: 27 Copynumber: 2.6 Consensus size: 26
32856654 AAAAGGGTAC
* *
32856664 AAAATATATACATGTACATATATAAA
1 AAAATATATACATATACATAGATAAA
*
32856690 AAAATTATATACATATATATAGATTATAA
1 AAAA-TATATACATATACATAGA-TA-AA
*
32856719 AAAAGATAATTACATATA
1 AAAATAT-A-TACATATA
32856737 TATATAAACA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
26 4 0.11
27 15 0.39
28 4 0.11
29 7 0.18
30 8 0.21
ACGTcount: A:0.58, C:0.05, G:0.04, T:0.33
Consensus pattern (26 bp):
AAAATATATACATATACATAGATAAA
Found at i:32856720 original size:30 final size:30
Alignment explanation
Indices: 32856684--32856740 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
32856674 CATGTACATA
*
32856684 TATAAAAAA-ATTATATACATATATATAGAT
1 TATAAAAAAGATAAT-TACATATATATAGAT
32856714 TATAAAAAAGATAATTACATATATATA
1 TATAAAAAAGATAATTACATATATATA
32856741 TAAACAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.35
Consensus pattern (30 bp):
TATAAAAAAGATAATTACATATATATAGAT
Found at i:32856927 original size:17 final size:17
Alignment explanation
Indices: 32856905--32856948 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
32856895 TAGGAAATAA
32856905 AAAATGTATATGTATAT
1 AAAATGTATATGTATAT
*
32856922 AAAATGTAAATGTATAT
1 AAAATGTATATGTATAT
*
32856939 -ATATGTATAT
1 AAAATGTATAT
32856949 AAAAGTTATG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 8 0.33
17 16 0.67
ACGTcount: A:0.48, C:0.00, G:0.11, T:0.41
Consensus pattern (17 bp):
AAAATGTATATGTATAT
Found at i:32856981 original size:60 final size:58
Alignment explanation
Indices: 32856874--32856988 Score: 142
Period size: 60 Copynumber: 1.9 Consensus size: 58
32856864 TATAAAAGTA
* *
32856874 TATATATATGCATATAAAAGTTAGGAAATAAAAAATGTATATGTATATAAAATGTAAATG
1 TATATATATGCATATAAAAGTTAGCAAATAAAAAA--TATATATATATAAAATGTAAATG
* *
32856934 TATATATATGTATATAAAAGTTATGCAAATAGAATAAA-ATATATATATAATATGT
1 TATATATATGCATATAAAAGTTA-GCAAATA-AA-AAATATATATATATAAAATGT
32856989 GCATGTGTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
60 37 0.77
61 6 0.12
62 2 0.04
63 3 0.06
ACGTcount: A:0.51, C:0.02, G:0.11, T:0.36
Consensus pattern (58 bp):
TATATATATGCATATAAAAGTTAGCAAATAAAAAATATATATATATAAAATGTAAATG
Found at i:32857076 original size:3 final size:3
Alignment explanation
Indices: 32857068--32857150 Score: 82
Period size: 3 Copynumber: 28.0 Consensus size: 3
32857058 GTATATATAG
*
32857068 TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA TAA TAA TAA CTTAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA --TAA
* * * *
32857118 TAA CAA GAA -AA TAA -AA T-T TAA TAA AAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
32857151 ATAAAAAAAG
Statistics
Matches: 67, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
2 5 0.07
3 59 0.88
5 3 0.04
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:32857459 original size:23 final size:22
Alignment explanation
Indices: 32857412--32857469 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
32857402 AAAGGGTATC
* * *
32857412 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAG
32857433 TACAAAATCATATCTTCTAAGAG
1 TAC-AAATCATATCTTCTAAGAG
*
32857456 TACATATCATATCT
1 TACAAATCATATCT
32857470 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.43, C:0.17, G:0.05, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAG
Found at i:32857472 original size:19 final size:20
Alignment explanation
Indices: 32857448--32857495 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
32857438 AATCATATCT
*
32857448 TCTAAGA-GTACATATCATA
1 TCTAAGATGCACATATCATA
*
32857467 TCTAAGATTGCATATATCATA
1 TCTAAGA-TGCACATATCATA
32857488 TCTAAGAT
1 TCTAAGAT
32857496 CATATCTAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 7 0.28
20 1 0.04
21 17 0.68
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (20 bp):
TCTAAGATGCACATATCATA
Found at i:32857515 original size:14 final size:12
Alignment explanation
Indices: 32857482--32857507 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
32857472 GATTGCATAT
32857482 ATCATATCTAAG
1 ATCATATCTAAG
32857494 ATCATATCTAAG
1 ATCATATCTAAG
32857506 AT
1 AT
32857508 TGCATATCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.15, G:0.08, T:0.35
Consensus pattern (12 bp):
ATCATATCTAAG
Found at i:32858354 original size:44 final size:44
Alignment explanation
Indices: 32858291--32858498 Score: 251
Period size: 44 Copynumber: 4.7 Consensus size: 44
32858281 ATCTACTATT
*
32858291 TTCAACCTACTCCACTGCTG-CTCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACAATC
* * *
32858335 TTCAACCTATTCCACTGCTGACAAGGGAGATAGGA-CCTACAATA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTC-ACAATC
* ** * *
32858379 TTCAATCTATTCCACTGCTTCCCAGGGAGATAGAATTCTCAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
* *
32858423 TTTAACCTATTCCACTGCTGACCAGGGAGATAAGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
* *
32858467 TAT-AACCTATTCCACTGCTGACTAGAGAGATA
1 T-TCAACCTATTCCACTGCTGACCAGGGAGATA
32858499 AGGCTGGGGT
Statistics
Matches: 139, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
43 1 0.01
44 135 0.97
45 3 0.02
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (44 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATC
Found at i:32858614 original size:43 final size:43
Alignment explanation
Indices: 32858561--32858699 Score: 129
Period size: 44 Copynumber: 3.2 Consensus size: 43
32858551 TATTTTTAGC
*
32858561 CTGCTCCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTTGAT
1 CTGCTTCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTTGAT
**** * * * * * *
32858604 CTGCTTCGCTGCCGGTGCAGGAAGGCAAGATCTGCTAT-TTTTAGC
1 CTGCTTCGCTG-CAACCCAGGGAGGCAAG-GCTGGTGTCTTTGA-T
32858649 CTGC-TCTGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTTGAT
1 CTGCTTC-GCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTTGAT
32858692 CTGCTTCG
1 CTGCTTCG
32858700 ATGTTGGTGC
Statistics
Matches: 69, Mismatches: 21, Indels: 12
0.68 0.21 0.12
Matches are distributed among these distances:
43 20 0.29
44 36 0.52
45 13 0.19
ACGTcount: A:0.16, C:0.27, G:0.31, T:0.27
Consensus pattern (43 bp):
CTGCTTCGCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTTGAT
Found at i:32858620 original size:88 final size:88
Alignment explanation
Indices: 32858498--32858729 Score: 392
Period size: 88 Copynumber: 2.6 Consensus size: 88
32858488 CTAGAGAGAT
* * *
32858498 AAGGCTGGGGTCATTGATCTGCTTCGCTGTCGGTGCAAGAAGGCAAGATCTGCTATTTTTAGCCT
1 AAGGCTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCT
32858563 GCTCCGCTGCAACCCAGGGAGGC
66 GCTCCGCTGCAACCCAGGGAGGC
*
32858586 AAGGCTGGTGTCTTTGATCTGCTTCGCTGCCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCT
1 AAGGCTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCT
*
32858651 GCTCTGCTGCAACCCAGGGAGGC
66 GCTCCGCTGCAACCCAGGGAGGC
* * *
32858674 AAGGCTGGTGTCTTTGATCTGCTTCGATGTTGGTGCAGGAAGGCAAGATTTGCTAT
1 AAGGCTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTAT
32858730 CTTCGATCTA
Statistics
Matches: 135, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 135 1.00
ACGTcount: A:0.19, C:0.22, G:0.31, T:0.28
Consensus pattern (88 bp):
AAGGCTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAGCCT
GCTCCGCTGCAACCCAGGGAGGC
Found at i:32858630 original size:44 final size:43
Alignment explanation
Indices: 32858498--32858720 Score: 119
Period size: 44 Copynumber: 5.1 Consensus size: 43
32858488 CTAGAGAGAT
* * *
32858498 AAGGCTGGGGTCATTGATCTGCTTCGCTGTCGGTGCAAGAAGGC
1 AAGGCTGGTGTCTTTGATCTGCTTCGCTG-CGGTGCAGGAAGGC
* * * * * * **** *
32858542 AAGATCTGCTAT-TTTTAGCCTGCTCCGCTGCAACCCAGGGAGGC
1 AAG-GCTGGTGTCTTTGA-TCTGCTTCGCTGCGGTGCAGGAAGGC
32858586 AAGGCTGGTGTCTTTGATCTGCTTCGCTGCCGGTGCAGGAAGGC
1 AAGGCTGGTGTCTTTGATCTGCTTCGCTG-CGGTGCAGGAAGGC
* * * * * **** *
32858630 AAGATCTGCTAT-TTTTAGCCTGC-TCTGCTGCAACCCAGGGAGGC
1 AAG-GCTGGTGTCTTTGA-TCTGCTTC-GCTGCGGTGCAGGAAGGC
* *
32858674 AAGGCTGGTGTCTTTGATCTGCTTCGATGTTGGTGCAGGAAGGC
1 AAGGCTGGTGTCTTTGATCTGCTTCGCTG-CGGTGCAGGAAGGC
32858718 AAG
1 AAG
32858721 ATTTGCTATC
Statistics
Matches: 122, Mismatches: 47, Indels: 20
0.65 0.25 0.11
Matches are distributed among these distances:
43 27 0.22
44 68 0.56
45 27 0.22
ACGTcount: A:0.18, C:0.23, G:0.32, T:0.27
Consensus pattern (43 bp):
AAGGCTGGTGTCTTTGATCTGCTTCGCTGCGGTGCAGGAAGGC
Found at i:32858777 original size:44 final size:44
Alignment explanation
Indices: 32858710--32858998 Score: 269
Period size: 44 Copynumber: 6.5 Consensus size: 44
32858700 ATGTTGGTGC
* * * *
32858710 AGGAAGGCAAGATTTGCTATCTTCGATCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATAT
* * * * *
32858754 ATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACTAGTAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACCAATAT
* * *
32858799 GGGAAGACAAGATCCGC-ATCTTCGATCCACTTC-CTACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATAT
* * * * *
32858842 AGGAAGACAGGACCTGCTATCTTCGACCTACTTCACGCCAATAC
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATAT
* * * * * * *
32858886 ATGAAGAAAAGATCTGTTTTCTTTGATCTACTTCGCCACCAGTAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACACCAATAT
* *
32858931 GGGAAGAAAAGATCTGC-ATCTTCGATCTACTTCACTACCAATAT
1 AGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-ACCAATAT
* *
32858975 AGGAAGATAGGATCTGCTATCTTC
1 AGGAAGACAAGATCTGCTATCTTC
32858999 ACTGATCTAC
Statistics
Matches: 192, Mismatches: 46, Indels: 13
0.76 0.18 0.05
Matches are distributed among these distances:
42 1 0.01
43 20 0.10
44 125 0.65
45 46 0.24
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (44 bp):
AGGAAGACAAGATCTGCTATCTTCGATCTACTTCACACCAATAT
Found at i:32858889 original size:132 final size:133
Alignment explanation
Indices: 32858724--32858998 Score: 453
Period size: 132 Copynumber: 2.1 Consensus size: 133
32858714 AGGCAAGATT
* *
32858724 TGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCG
1 TGCTATCTTCGACCTACTTCACGCCAATACATGAAGAAAAGATCTGCTTTCTTCGATCTACTTCG
* *
32858789 CCACTAGTATGGGAAGACAAGATCCGCATCTTCGATCCACTTC-CTACCAATATAGGAAGACAGG
66 CCACCAGTATGGGAAGAAAAGATCCGCATCTTCGATCCACTTCACTACCAATATAGGAAGACAGG
32858853 ACC
131 ACC
* *
32858856 TGCTATCTTCGACCTACTTCACGCCAATACATGAAGAAAAGATCTGTTTTCTTTGATCTACTTCG
1 TGCTATCTTCGACCTACTTCACGCCAATACATGAAGAAAAGATCTGCTTTCTTCGATCTACTTCG
* * *
32858921 CCACCAGTATGGGAAGAAAAGATCTGCATCTTCGATCTACTTCACTACCAATATAGGAAGATAGG
66 CCACCAGTATGGGAAGAAAAGATCCGCATCTTCGATCCACTTCACTACCAATATAGGAAGACAGG
*
32858986 ATC
131 ACC
32858989 TGCTATCTTC
1 TGCTATCTTC
32858999 ACTGATCTAC
Statistics
Matches: 132, Mismatches: 10, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
132 100 0.76
133 32 0.24
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (133 bp):
TGCTATCTTCGACCTACTTCACGCCAATACATGAAGAAAAGATCTGCTTTCTTCGATCTACTTCG
CCACCAGTATGGGAAGAAAAGATCCGCATCTTCGATCCACTTCACTACCAATATAGGAAGACAGG
ACC
Found at i:32864053 original size:14 final size:16
Alignment explanation
Indices: 32864019--32864057 Score: 55
Period size: 14 Copynumber: 2.5 Consensus size: 16
32864009 AATGGCATAG
32864019 AAATAATATAAACAAAC
1 AAATAA-ATAAACAAAC
32864036 AAATAAATAAA-AAA-
1 AAATAAATAAACAAAC
32864050 AAATAAAT
1 AAATAAAT
32864058 CAATAACATG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.36
15 3 0.14
16 5 0.23
17 6 0.27
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (16 bp):
AAATAAATAAACAAAC
Found at i:32864242 original size:27 final size:26
Alignment explanation
Indices: 32864186--32864258 Score: 65
Period size: 27 Copynumber: 2.6 Consensus size: 26
32864176 AAAAGAGTAC
* *
32864186 AAAATATATACATGTACATATATAAA
1 AAAATATATACATATACATAGATAAA
*
32864212 AAAATTATATACATATATATAGATTATAA
1 AAAA-TATATACATATACATAGA-TA-AA
*
32864241 AAAAGATAATTACATATA
1 AAAATAT-A-TACATATA
32864259 TATATAAACA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
26 4 0.11
27 15 0.39
28 4 0.11
29 7 0.18
30 8 0.21
ACGTcount: A:0.58, C:0.05, G:0.04, T:0.33
Consensus pattern (26 bp):
AAAATATATACATATACATAGATAAA
Found at i:32864242 original size:30 final size:30
Alignment explanation
Indices: 32864206--32864262 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
32864196 CATGTACATA
*
32864206 TATAAAAAA-ATTATATACATATATATAGAT
1 TATAAAAAAGATAAT-TACATATATATAGAT
32864236 TATAAAAAAGATAATTACATATATATA
1 TATAAAAAAGATAATTACATATATATA
32864263 TAAACAAATG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.35
Consensus pattern (30 bp):
TATAAAAAAGATAATTACATATATATAGAT
Found at i:32864447 original size:17 final size:17
Alignment explanation
Indices: 32864425--32864468 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
32864415 TAGGAAATCA
*
32864425 AAAATGTATATGTATAT
1 AAAATGTATATGTAAAT
*
32864442 AAAATGTAAATGTAAAT
1 AAAATGTATATGTAAAT
*
32864459 -ATATGTATAT
1 AAAATGTATAT
32864469 AAAAGTTATG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
16 8 0.35
17 15 0.65
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (17 bp):
AAAATGTATATGTAAAT
Found at i:32864483 original size:25 final size:27
Alignment explanation
Indices: 32864431--32864484 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
32864421 ATCAAAAATG
*
32864431 TATATGTATATAAAATGTAAATGTAAA
1 TATATGTATATAAAATGTAAATGCAAA
*
32864458 TATATGTATATAAAA-GT-TATGCAAA
1 TATATGTATATAAAATGTAAATGCAAA
32864483 TA
1 TA
32864485 GAATAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 8 0.32
26 2 0.08
27 15 0.60
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.37
Consensus pattern (27 bp):
TATATGTATATAAAATGTAAATGCAAA
Found at i:32864600 original size:3 final size:3
Alignment explanation
Indices: 32864592--32864630 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
32864582 GTATATATAG
*
32864592 TAA TAA TAA TAA TAA TAA TAA TGA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
32864631 CTTAATAACA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:32864965 original size:22 final size:21
Alignment explanation
Indices: 32864930--32864987 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
32864920 AAAGGGTATC
* *
32864930 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
32864951 TACAAAATCATATCTTCTAATAT
1 TAC-AAATCATATC-TCTAAGAT
* *
32864974 TGCATATCATATCT
1 TACAAATCATATCT
32864988 AAGATTGCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.41, C:0.17, G:0.03, T:0.38
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:32864994 original size:19 final size:20
Alignment explanation
Indices: 32864943--32865013 Score: 63
Period size: 21 Copynumber: 3.4 Consensus size: 20
32864933 AAATTAAATC
* *
32864943 TCTAAGATTACAAAATCATA
1 TCTAAGATTGCAATATCATA
*
32864963 TCTTCTAATATTGC-ATATCATA
1 ---TCTAAGATTGCAATATCATA
32864985 TCTAAGATTGCATATATCATA
1 TCTAAGATTGCA-ATATCATA
*
32865006 TATAAGAT
1 TCTAAGAT
32865014 CATATCTAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
19 10 0.24
21 15 0.37
22 7 0.17
23 9 0.22
ACGTcount: A:0.41, C:0.14, G:0.07, T:0.38
Consensus pattern (20 bp):
TCTAAGATTGCAATATCATA
Found at i:32873090 original size:47 final size:47
Alignment explanation
Indices: 32873039--32873404 Score: 572
Period size: 47 Copynumber: 7.7 Consensus size: 47
32873029 TTAGGATTCT
* * *
32873039 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
32873086 ATGTGATGAATGTGAAAGTGTATATACATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCG
32873135 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
32873182 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
32873229 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
32873276 ATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
32873323 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
32873370 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
32873405 TCCCGAAGGG
Statistics
Matches: 299, Mismatches: 17, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
46 1 0.00
47 252 0.84
49 46 0.15
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:32873577 original size:37 final size:37
Alignment explanation
Indices: 32873526--32873638 Score: 163
Period size: 37 Copynumber: 3.1 Consensus size: 37
32873516 AGCTCTAAAT
*
32873526 ACCCGATGAGTACGTGTGGGGATTTTGTCCGGGTAAG
1 ACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAAG
32873563 ACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAAG
1 ACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAAG
* * ** * *
32873600 ACCTGATAACTTTGTGTGGAGATTATGTCCGGGTAAG
1 ACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAAG
32873637 AC
1 AC
32873639 TTCGTAATAA
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.21, C:0.17, G:0.34, T:0.28
Consensus pattern (37 bp):
ACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAAG
Found at i:32892282 original size:22 final size:22
Alignment explanation
Indices: 32892257--32892298 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
32892247 GTTTTTGAAG
32892257 TTTTAATTTTATTTTTCAATAC
1 TTTTAATTTTATTTTTCAATAC
*
32892279 TTTTATTTTTATTTTTCAAT
1 TTTTAATTTTATTTTTCAAT
32892299 GATTACAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.24, C:0.07, G:0.00, T:0.69
Consensus pattern (22 bp):
TTTTAATTTTATTTTTCAATAC
Found at i:32892633 original size:12 final size:12
Alignment explanation
Indices: 32892616--32892640 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32892606 AGAAGTGCTT
32892616 GATCAGAGGTGA
1 GATCAGAGGTGA
32892628 GATCAGAGGTGA
1 GATCAGAGGTGA
32892640 G
1 G
32892641 TAGTTTTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.44, T:0.16
Consensus pattern (12 bp):
GATCAGAGGTGA
Found at i:32896977 original size:20 final size:20
Alignment explanation
Indices: 32896952--32896999 Score: 96
Period size: 20 Copynumber: 2.4 Consensus size: 20
32896942 GCTAGGGTAG
32896952 GAAAAATATACTTAAAGGTT
1 GAAAAATATACTTAAAGGTT
32896972 GAAAAATATACTTAAAGGTT
1 GAAAAATATACTTAAAGGTT
32896992 GAAAAATA
1 GAAAAATA
32897000 AAATAAAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.54, C:0.04, G:0.15, T:0.27
Consensus pattern (20 bp):
GAAAAATATACTTAAAGGTT
Found at i:32897006 original size:19 final size:20
Alignment explanation
Indices: 32896952--32897006 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
32896942 GCTAGGGTAG
**
32896952 GAAAAATATACTTAAAGGTT
1 GAAAAATATAAATAAAGGTT
**
32896972 GAAAAATATACTTAAAGGTT
1 GAAAAATATAAATAAAGGTT
32896992 GAAAAATA-AAATAAA
1 GAAAAATATAAATAAA
32897007 AAGTTGTATT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
19 5 0.15
20 28 0.85
ACGTcount: A:0.58, C:0.04, G:0.13, T:0.25
Consensus pattern (20 bp):
GAAAAATATAAATAAAGGTT
Found at i:32897012 original size:20 final size:20
Alignment explanation
Indices: 32896969--32897012 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
32896959 ATACTTAAAG
* * * *
32896969 GTTGAAAAATATACTTAAAG
1 GTTGAAAAATAAAATAAAAA
32896989 GTTGAAAAATAAAATAAAAA
1 GTTGAAAAATAAAATAAAAA
32897009 GTTG
1 GTTG
32897013 TATTTATACC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.55, C:0.02, G:0.16, T:0.27
Consensus pattern (20 bp):
GTTGAAAAATAAAATAAAAA
Done.