Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 118 of 189
Found at i:33166976 original size:89 final size:89
Alignment explanation
Indices: 33166759--33166980 Score: 238
Period size: 89 Copynumber: 2.5 Consensus size: 89
33166749 GGTCGTCACC
* * * * *
33166759 ATCCCTTTTCATAG-TCGATGGTCATCACCATCCCTTTTCATAAT-TTGATAGTCGA--AGCTAT
1 ATCCCTTTTCATAGTTCGATAGTCGTAACCATCCCTTTTCAT--TGTTGATGGTC-ATCA-CCAT
*
33166820 CCCTTTTCATAATTCGATAGCCGAAGTT
62 CCCTTTTCATAATTCGATAGCCGAAGCT
* * * * *
33166848 ATCCCTTTTCATAGTTTGATGGTCGTCACCATCCTTTTTCATTGTTGATGGTCATCACCATCCTT
1 ATCCCTTTTCATAGTTCGATAGTCGTAACCATCCCTTTTCATTGTTGATGGTCATCACCATCCCT
* *
33166913 TTTCATAATTTGATAGCCGGAGCT
66 TTTCATAATTCGATAGCCGAAGCT
*
33166937 ATCCCTTTTCATAGTTCGATAGTCG-AAGCTATCCCTTTTCATTG
1 ATCCCTTTTCATAGTTCGATAGTCGTAA-CCATCCCTTTTCATTG
33166981 GTCCATTGAG
Statistics
Matches: 114, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
88 3 0.03
89 86 0.75
90 25 0.22
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (89 bp):
ATCCCTTTTCATAGTTCGATAGTCGTAACCATCCCTTTTCATTGTTGATGGTCATCACCATCCCT
TTTCATAATTCGATAGCCGAAGCT
Found at i:33170369 original size:12 final size:10
Alignment explanation
Indices: 33170342--33170408 Score: 50
Period size: 11 Copynumber: 6.5 Consensus size: 10
33170332 AAAAATTATA
33170342 TATATAAAAAT
1 TATA-AAAAAT
33170353 TATAATAAAAT
1 TATAA-AAAAT
33170364 TCATAAAAAA-
1 T-ATAAAAAAT
33170374 TA-AGAAAAA-
1 TATA-AAAAAT
* *
33170383 TCTAATAAAT
1 TATAAAAAAT
33170393 TATAAAAATAT
1 TATAAAAA-AT
33170404 TATAA
1 TATAA
33170409 TAACCAAAAC
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
8 1 0.02
9 11 0.24
10 9 0.20
11 21 0.46
12 4 0.09
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.31
Consensus pattern (10 bp):
TATAAAAAAT
Found at i:33170369 original size:21 final size:21
Alignment explanation
Indices: 33170345--33170397 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 21
33170335 AATTATATAT
* *
33170345 ATAAAAATTATAATAAAATTC
1 ATAAAAATTATAAGAAAAATC
33170366 ATAAAAA--ATAAGAAAAATC
1 ATAAAAATTATAAGAAAAATC
33170385 -TAATAAATTATAA
1 ATAA-AAATTATAA
33170398 AAATATTATA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
18 3 0.11
19 13 0.48
21 11 0.41
ACGTcount: A:0.66, C:0.04, G:0.02, T:0.28
Consensus pattern (21 bp):
ATAAAAATTATAAGAAAAATC
Found at i:33170534 original size:16 final size:16
Alignment explanation
Indices: 33170513--33170544 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
33170503 ATTTTTTTAG
*
33170513 AAAATATAAAATATTA
1 AAAATATAAAAAATTA
33170529 AAAATATAAAAAATTA
1 AAAATATAAAAAATTA
33170545 TTTATTGGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (16 bp):
AAAATATAAAAAATTA
Found at i:33186270 original size:19 final size:19
Alignment explanation
Indices: 33186246--33186283 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
33186236 GTATAACCCC
33186246 CACATTCCCCTGAACTGTA
1 CACATTCCCCTGAACTGTA
33186265 CACATTCCCCTGAACTGTA
1 CACATTCCCCTGAACTGTA
33186284 TGTGGAGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.37, G:0.11, T:0.26
Consensus pattern (19 bp):
CACATTCCCCTGAACTGTA
Found at i:33191216 original size:25 final size:25
Alignment explanation
Indices: 33191176--33191236 Score: 95
Period size: 25 Copynumber: 2.4 Consensus size: 25
33191166 TGCATTAATC
33191176 AATTTATTCTTACATAAAGAGCACCA
1 AATTTA-TCTTACATAAAGAGCACCA
* *
33191202 AATTTATCTTGCATAAGGAGCACCA
1 AATTTATCTTACATAAAGAGCACCA
33191227 AATTTATCTT
1 AATTTATCTT
33191237 CTAAAAGTAA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
25 27 0.82
26 6 0.18
ACGTcount: A:0.38, C:0.18, G:0.10, T:0.34
Consensus pattern (25 bp):
AATTTATCTTACATAAAGAGCACCA
Found at i:33196697 original size:5 final size:5
Alignment explanation
Indices: 33196640--33196693 Score: 65
Period size: 5 Copynumber: 10.8 Consensus size: 5
33196630 TATATTATTT
* * *
33196640 CATTC CATTC CATTC CATAC CATTC CATTC CATAT- CATTC CATTT CATTT
1 CATTC CATTC CATTC CATTC CATTC CATTC CAT-TC CATTC CATTC CATTC
33196690 CATT
1 CATT
33196694 TCATCAAGCA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
4 1 0.02
5 42 0.95
6 1 0.02
ACGTcount: A:0.24, C:0.33, G:0.00, T:0.43
Consensus pattern (5 bp):
CATTC
Found at i:33215116 original size:2 final size:2
Alignment explanation
Indices: 33215109--33215134 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
33215099 CCATAGAAGG
33215109 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
33215135 TCACCTTACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:33220860 original size:21 final size:22
Alignment explanation
Indices: 33220819--33220870 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
33220809 AAATAAAAAA
33220819 ATTATTTAAAATAAATATTAA-T
1 ATTA-TTAAAATAAATATTAAGT
*
33220841 ATTATTAAAA-AAGTATTTAAGT
1 ATTATTAAAATAAATA-TTAAGT
*
33220863 ATTCTTAA
1 ATTATTAA
33220871 TTTCTTCTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 4 0.15
21 10 0.38
22 12 0.46
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (22 bp):
ATTATTAAAATAAATATTAAGT
Found at i:33224038 original size:28 final size:28
Alignment explanation
Indices: 33224006--33224068 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
33223996 AAATTGAAGG
33224006 TTTAAAAATCTCT-TTTACTGTTTAACAA
1 TTTAAAAATCT-TATTTACTGTTTAACAA
* * * *
33224034 TTTAAAAATGTTATTTATTGTTTAATAG
1 TTTAAAAATCTTATTTACTGTTTAACAA
33224062 TTTAAAA
1 TTTAAAA
33224069 TTAACATTTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 1 0.03
28 29 0.97
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.49
Consensus pattern (28 bp):
TTTAAAAATCTTATTTACTGTTTAACAA
Found at i:33234663 original size:11 final size:11
Alignment explanation
Indices: 33234647--33234672 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
33234637 ATTTAAGCTC
33234647 TTTTTGTTCAA
1 TTTTTGTTCAA
33234658 TTTTTGTTCAA
1 TTTTTGTTCAA
33234669 TTTT
1 TTTT
33234673 ACTTGTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.08, G:0.08, T:0.69
Consensus pattern (11 bp):
TTTTTGTTCAA
Found at i:33238478 original size:15 final size:15
Alignment explanation
Indices: 33238458--33238487 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
33238448 TGCAATCCCT
*
33238458 CACACGCCCGTGTGA
1 CACACGCCCATGTGA
33238473 CACACGCCCATGTGA
1 CACACGCCCATGTGA
33238488 AAACCATTGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.40, G:0.23, T:0.13
Consensus pattern (15 bp):
CACACGCCCATGTGA
Found at i:33242203 original size:14 final size:14
Alignment explanation
Indices: 33242184--33242214 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
33242174 ATGATTTTTT
*
33242184 TAATCTAAATTTAC
1 TAATCTAAATTAAC
33242198 TAATCTAAATTAAC
1 TAATCTAAATTAAC
33242212 TAA
1 TAA
33242215 GAACGCAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.39
Consensus pattern (14 bp):
TAATCTAAATTAAC
Found at i:33244088 original size:6 final size:6
Alignment explanation
Indices: 33244070--33244108 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
33244060 TAAGTATAAG
* * *
33244070 AAAATA ACAATA AATATA AACATA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAA
33244109 CAAATAAACT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (6 bp):
AAAATA
Found at i:33245776 original size:18 final size:17
Alignment explanation
Indices: 33245730--33245779 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
33245720 TAATATAACT
*
33245730 AAGAATAGAAAATAATA
1 AAGAATAAAAAATAATA
*
33245747 GAGAATAAAAAATGAATA
1 AAGAATAAAAAAT-AATA
33245765 AAGAA-AATAAAATAA
1 AAGAATAA-AAAATAA
33245780 GTAATAAGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
17 15 0.54
18 13 0.46
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (17 bp):
AAGAATAAAAAATAATA
Found at i:33245794 original size:21 final size:19
Alignment explanation
Indices: 33245742--33245795 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 19
33245732 GAATAGAAAA
33245742 TAATAGAGAATAA-AAAATG
1 TAATA-AGAATAATAAAATG
33245761 -AATAAAGAA-AATAAAATAAG
1 TAAT-AAGAATAATAAAAT--G
33245781 TAATAAGAATAATAA
1 TAATAAGAATAATAA
33245796 TAGACAAGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
17 2 0.07
18 12 0.41
19 1 0.03
20 6 0.21
21 8 0.28
ACGTcount: A:0.69, C:0.00, G:0.11, T:0.20
Consensus pattern (19 bp):
TAATAAGAATAATAAAATG
Found at i:33245818 original size:52 final size:48
Alignment explanation
Indices: 33245712--33245818 Score: 117
Period size: 51 Copynumber: 2.1 Consensus size: 48
33245702 CAGACCAGAA
* * * *
33245712 AAATAAAATAATATAACTAAGAATAGAAAATAATAGAGAATAAAAAAT
1 AAATAAAAAAATATAAATAAGAATAGAAAATAATAGACAAGAAAAAAT
*
33245760 GAATAAAGAAAATA-AAATAAGTAATAAGAATAATAATAGACAAGAAACAAAT
1 AAATAAA-AAAATATAAATAAG-AAT-AGAA-AATAATAGACAAGAAA-AAAT
33245812 AAATAAA
1 AAATAAA
33245819 TAATAAAGAA
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
48 12 0.25
49 8 0.17
50 4 0.08
51 14 0.29
52 10 0.21
ACGTcount: A:0.69, C:0.03, G:0.09, T:0.19
Consensus pattern (48 bp):
AAATAAAAAAATATAAATAAGAATAGAAAATAATAGACAAGAAAAAAT
Found at i:33249689 original size:14 final size:14
Alignment explanation
Indices: 33249670--33249696 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
33249660 AGAAGCAAAT
33249670 AAAAGAAAAATTAG
1 AAAAGAAAAATTAG
33249684 AAAAGAAAAATTA
1 AAAAGAAAAATTA
33249697 AACTAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.15
Consensus pattern (14 bp):
AAAAGAAAAATTAG
Found at i:33249706 original size:12 final size:12
Alignment explanation
Indices: 33249683--33249729 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 12
33249673 AGAAAAATTA
*
33249683 GAAAAGAAAAAT
1 GAAAATAAAAAT
* *
33249695 TAAACTAAAAAT
1 GAAAATAAAAAT
33249707 GAAAATAAAAAT
1 GAAAATAAAAAT
*
33249719 -ATAATAAAAAT
1 GAAAATAAAAAT
33249730 AAATTTCTAA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
11 10 0.34
12 19 0.66
ACGTcount: A:0.72, C:0.02, G:0.06, T:0.19
Consensus pattern (12 bp):
GAAAATAAAAAT
Found at i:33251820 original size:14 final size:14
Alignment explanation
Indices: 33251796--33251830 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
33251786 AAATCTGGTA
33251796 AAATATATTTTTAAG
1 AAAT-TATTTTTAAG
33251811 AAATTATTTTTAAG
1 AAATTATTTTTAAG
33251825 ATAATT
1 A-AATT
33251831 TTTAAAATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 11 0.58
15 8 0.42
ACGTcount: A:0.46, C:0.00, G:0.06, T:0.49
Consensus pattern (14 bp):
AAATTATTTTTAAG
Found at i:33254280 original size:25 final size:25
Alignment explanation
Indices: 33254258--33254333 Score: 81
Period size: 23 Copynumber: 3.2 Consensus size: 25
33254248 ATATAAATTT
33254258 ATTATCATAAATTATATTAAAAT-TC
1 ATTAT-ATAAATTATATTAAAATATC
* *
33254283 ATTA-ATACATTTTATTAAAATAT-
1 ATTATATAAATTATATTAAAATATC
*
33254306 -TTTTAT-AATTATATTAAAATATC
1 ATTATATAAATTATATTAAAATATC
33254329 ATTAT
1 ATTAT
33254334 CAAAATAATA
Statistics
Matches: 41, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
22 16 0.39
23 17 0.41
24 4 0.10
25 4 0.10
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (25 bp):
ATTATATAAATTATATTAAAATATC
Found at i:33254323 original size:22 final size:23
Alignment explanation
Indices: 33254267--33254332 Score: 82
Period size: 23 Copynumber: 2.9 Consensus size: 23
33254257 TATTATCATA
33254267 AATTATATTAAAAT-TCATTAAT
1 AATTATATTAAAATATCATTAAT
* * *
33254289 ACATTTTATTAAAATAT-TTTTAT
1 A-ATTATATTAAAATATCATTAAT
33254312 AATTATATTAAAATATCATTA
1 AATTATATTAAAATATCATTA
33254333 TCAAAATAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
22 15 0.43
23 19 0.54
24 1 0.03
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.48
Consensus pattern (23 bp):
AATTATATTAAAATATCATTAAT
Found at i:33254333 original size:22 final size:22
Alignment explanation
Indices: 33254260--33254333 Score: 82
Period size: 22 Copynumber: 3.4 Consensus size: 22
33254250 ATAAATTTAT
33254260 TATCA-TA-AATTATATTAAAA
1 TATCATTATAATTATATTAAAA
*
33254280 T-TCATTAATACATTTTATTAAAA
1 TATCATT-ATA-ATTATATTAAAA
**
33254303 TATTTTTATAATTATATTAAAA
1 TATCATTATAATTATATTAAAA
33254325 TATCATTAT
1 TATCATTAT
33254334 CAAAATAATA
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
19 3 0.07
20 2 0.05
21 1 0.02
22 19 0.44
23 15 0.35
24 3 0.07
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (22 bp):
TATCATTATAATTATATTAAAA
Found at i:33257845 original size:21 final size:21
Alignment explanation
Indices: 33257819--33257868 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
33257809 TTAATAACCT
*
33257819 TGGTCAAAATAGTTATGGTGA
1 TGGTCAAAATAGTTATGATGA
*
33257840 TGGTCAAAATTGTTATGATGA
1 TGGTCAAAATAGTTATGATGA
33257861 TGGTCAAA
1 TGGTCAAA
33257869 GGTGGGGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.34
Consensus pattern (21 bp):
TGGTCAAAATAGTTATGATGA
Found at i:33260766 original size:3 final size:3
Alignment explanation
Indices: 33260758--33260813 Score: 60
Period size: 3 Copynumber: 18.3 Consensus size: 3
33260748 ATAACCAAAT
* * *
33260758 ATA ATA AT- ATCA ATA CTA ATA AGA GTA ATA ATA ATAA ATA ATA ATA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA
33260804 ATA ATA ATA A
1 ATA ATA ATA A
33260814 ATTAATTAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
2 2 0.05
3 37 0.84
4 5 0.11
ACGTcount: A:0.62, C:0.04, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:33262466 original size:44 final size:44
Alignment explanation
Indices: 33262412--33263101 Score: 421
Period size: 44 Copynumber: 15.7 Consensus size: 44
33262402 ATTTTTAGTT
* * *
33262412 TGCTCCACTGCAACTTCAGGGAGATCAGATTATTGGCTGTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTATTAGCTTTAATC
* *
33262456 TGCTCCACTGCAACTTCAGGGAGATAAGA-T-TT-G-TCATGATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTATTAGCT-TTAATC
* * * *
33262497 TGCTCTACTGCAACTTCAGAGAGATAAGATCTGTGATAGCTTTAATT
1 TGCTCCACTGCAACTTCAGGGAGATAAGAT-TAT--TAGCTTTAATC
* * * * * * *
33262544 TGTTCCACCGCAGCTTCAGGGAAATAAG---ATTCGCTATCAT-
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTATTAGCTTTAATC
* * * *
33262584 TAG-T-CACTGCAACTTCAGGGAGATAACACT-TCA-CTTCAATC
1 T-GCTCCACTGCAACTTCAGGGAGATAAGATTATTAGCTTTAATC
* * * * * *
33262625 CGCTCCACTGTAACTTCAGAGAGATAGGATTATTGGCTTTAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTATTAGCTTTAATC
* * * * * * * *
33262669 TACTCCACTGCAACTTTAGGGGGATAAGACTTGCTT-TCTTCAGTT
1 TGCTCCACTGCAACTTCAGGGAGATAAGA-TT-ATTAGCTTTAATC
* *
33262714 TGCTCCACTGCAACTTCAGGGAGATAAGACTT-GTAACTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGA-TTATTAGCTTTAATC
* * * * * *
33262758 CGCTCCACTGAAACTTCAGGGAGATAGGATTACTT-TCTTCAGTC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTA-TTAGCTTTAATC
* *
33262802 TGCTCCACTGCAACTTCAGGGAGATAAGACTT-GTAACTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGA-TTATTAGCTTTAATC
* **
33262846 CGCTCCACTATAACTTCAGGGAGATAAGATTATTAGCTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTATTAGCTTTAATC
* * *
33262890 TGCTCTACTGCAACTTCAGGGAGATAAGATTCGCCATCT-TCTTCAAT-
1 TGCTCCACTGCAACTTCAGGGAGATAAGATT----AT-TAGCTTTAATC
* * * * ** * *
33262937 T-CATTCCACTGTAACTTTAGGGGGATAAGACTTGTTTTCTTCAGTC
1 TGC--TCCACTGCAACTTCAGGGAGATAAGA-TTATTAGCTTTAATC
** * * * *
33262983 TGCTCCACTAAAACTTCAAGGAGTTAAGACTT-GTAACTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGA-TTATTAGCTTTAATC
* * * *
33263027 TGATCCACTGTAACTTCAGGGAGATAGGATTATTGGCTTTAATC
1 TGCTCCACTGCAACTTCAGGGAGATAAGATTATTAGCTTTAATC
* * * *
33263071 TACTCTACTGTACCTTCAGGGAGATAAGATT
1 TGCTCCACTGCAACTTCAGGGAGATAAGATT
33263102 CACCATCTTT
Statistics
Matches: 497, Mismatches: 112, Indels: 74
0.73 0.16 0.11
Matches are distributed among these distances:
39 19 0.04
40 8 0.02
41 42 0.08
42 23 0.05
43 12 0.02
44 255 0.51
45 71 0.14
46 5 0.01
47 28 0.06
48 31 0.06
49 3 0.01
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (44 bp):
TGCTCCACTGCAACTTCAGGGAGATAAGATTATTAGCTTTAATC
Found at i:33263000 original size:181 final size:181
Alignment explanation
Indices: 33262791--33263126 Score: 546
Period size: 181 Copynumber: 1.9 Consensus size: 181
33262781 ATAGGATTAC
** * *
33262791 TTTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCCGCTCCACTA
1 TTTCTTCAGTCTGCTCCACTAAAACTTCAAGGAGATAAGACTTGTAACTTTAATCCGATCCACTA
*
33262856 TAACTTCAGGGAGATAAGATTATTAGCTTTAATCTGCTCTACTGCAACTTCAGGGAGATAAGATT
66 TAACTTCAGGGAGATAAGATTATTAGCTTTAATCTACTCTACTGCAACTTCAGGGAGATAAGATT
*
33262921 CGCCATCTTCTTCAATTCATTCCACTGTAACTTTAGGGGGATAAGACTTGT
131 CACCATCTTCTTCAATTCATTCCACTGTAACTTTAGGGGGATAAGACTTGT
* * *
33262972 TTTCTTCAGTCTGCTCCACTAAAACTTCAAGGAGTTAAGACTTGTAACTTTAATCTGATCCACTG
1 TTTCTTCAGTCTGCTCCACTAAAACTTCAAGGAGATAAGACTTGTAACTTTAATCCGATCCACTA
* * * *
33263037 TAACTTCAGGGAGATAGGATTATTGGCTTTAATCTACTCTACTGTACCTTCAGGGAGATAAGATT
66 TAACTTCAGGGAGATAAGATTATTAGCTTTAATCTACTCTACTGCAACTTCAGGGAGATAAGATT
*
33263102 CACCATCTTTTTCAATTCATTCCAC
131 CACCATCTTCTTCAATTCATTCCAC
33263127 AGCAACTTCA
Statistics
Matches: 141, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
181 141 1.00
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.34
Consensus pattern (181 bp):
TTTCTTCAGTCTGCTCCACTAAAACTTCAAGGAGATAAGACTTGTAACTTTAATCCGATCCACTA
TAACTTCAGGGAGATAAGATTATTAGCTTTAATCTACTCTACTGCAACTTCAGGGAGATAAGATT
CACCATCTTCTTCAATTCATTCCACTGTAACTTTAGGGGGATAAGACTTGT
Found at i:33263461 original size:24 final size:24
Alignment explanation
Indices: 33263429--33263476 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
33263419 CAGATTGCCC
*
33263429 CCACTGTAATCTTCAAGGTTCAAT
1 CCACCGTAATCTTCAAGGTTCAAT
33263453 CCACCGTAATCTTCAAGGTTCAAT
1 CCACCGTAATCTTCAAGGTTCAAT
33263477 GCACAGTACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.31
Consensus pattern (24 bp):
CCACCGTAATCTTCAAGGTTCAAT
Found at i:33266329 original size:49 final size:47
Alignment explanation
Indices: 33266250--33266705 Score: 741
Period size: 47 Copynumber: 9.6 Consensus size: 47
33266240 TATTTGAATA
*
33266250 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
33266297 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
33266346 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
33266393 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
33266442 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
33266491 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
33266538 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
33266585 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
33266632 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
33266679 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
33266706 TCCCGAAGGG
Statistics
Matches: 386, Mismatches: 19, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
47 246 0.64
49 140 0.36
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:33266358 original size:96 final size:96
Alignment explanation
Indices: 33266250--33266705 Score: 753
Period size: 96 Copynumber: 4.8 Consensus size: 96
33266240 TATTTGAATA
33266250 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
33266315 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
33266346 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
33266411 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
*
33266442 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATA
* *
33266505 TATATGTGATAAGGCCGAATGGCCAATGTGATG
64 TATATGTGATAAGGCCTAATGGCCGATGTGATG
*
33266538 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
33266601 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
33266632 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
33266696 -ATGTGATAAG
66 TATGTGATAAG
33266706 TCCCGAAGGG
Statistics
Matches: 342, Mismatches: 14, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
94 142 0.42
95 1 0.00
96 154 0.45
98 45 0.13
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:33269256 original size:38 final size:38
Alignment explanation
Indices: 33269127--33269239 Score: 183
Period size: 38 Copynumber: 3.0 Consensus size: 38
33269117 AATCCGAGTT
* * *
33269127 TAAAGACCCGCTGACTATATGA-AGAGATTATGTCCGGG
1 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGGG
33269165 TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGGG
1 TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGGG
33269203 TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGG
1 TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGG
33269240 ATTAAAATTC
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
37 1 0.01
38 70 0.99
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGGCTATGTACAGAGATTATGTCCGGG
Found at i:33269352 original size:40 final size:40
Alignment explanation
Indices: 33269293--33269598 Score: 483
Period size: 40 Copynumber: 7.7 Consensus size: 40
33269283 AGGTCTCGAC
33269293 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
33269332 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
33269372 GATGTATCCGGGCTAAGT-CCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
33269411 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
33269451 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
*
33269491 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * * *
33269531 GATATATCCGTGCTAA-ACCCGAAGAGCATTCGTGCTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
33269570 GTTATATCCGGGCTAGGTCCCGAAGAGCA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCA
33269599 ATCATGCTGG
Statistics
Matches: 249, Mismatches: 15, Indels: 5
0.93 0.06 0.02
Matches are distributed among these distances:
39 76 0.31
40 173 0.69
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:33269508 original size:119 final size:120
Alignment explanation
Indices: 33269293--33269611 Score: 518
Period size: 119 Copynumber: 2.7 Consensus size: 120
33269283 AGGTCTCGAC
33269293 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
33269357 AGCATTCATGCTAGTGATGTATCCGGGCTAAG-TCCGAAGAGCATTCATGCTAGT
66 AGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
*
33269411 GATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
*
33269476 AGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGT
66 AGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
* * * * * * *
33269531 GATATATCCGTGCTAA-ACCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAG
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
* *
33269595 AGCAATCATGCTGGTGA
66 AGCATTCATGCTAGTGA
33269612 CGTGTATTCG
Statistics
Matches: 187, Mismatches: 12, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
118 4 0.02
119 148 0.79
120 35 0.19
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (120 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
AGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGT
Found at i:33269593 original size:159 final size:158
Alignment explanation
Indices: 33269293--33269598 Score: 486
Period size: 159 Copynumber: 1.9 Consensus size: 158
33269283 AGGTCTCGAC
*
33269293 GATGATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGA
1 GATGATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGA
* ** *
33269358 GCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGTATCCGGG
66 GCATTCATGCTAGTGATATATCCGGGCTAAACCCGAAGAGCATTCATGCTAGTGATATATCCGGG
*
33269423 CTAAGTTCCGAAGAGCATTCGTGCTAGT
131 CTAAGTCCCGAAGAGCATTCGTGCTAGT
*
33269451 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAG
1 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAG
* * * * *
33269516 AGCATTCGTGCTAGTGATATATCCGTGCTAAACCCGAAGAGCATTCGTGCTGGTGTTATATCCGG
65 AGCATTCATGCTAGTGATATATCCGGGCTAAACCCGAAGAGCATTCATGCTAGTGATATATCCGG
*
33269581 GCTAGGTCCCGAAGAGCA
130 GCTAAGTCCCGAAGAGCA
33269599 ATCATGCTGG
Statistics
Matches: 134, Mismatches: 13, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
158 4 0.03
159 130 0.97
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (158 bp):
GATGATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAGA
GCATTCATGCTAGTGATATATCCGGGCTAAACCCGAAGAGCATTCATGCTAGTGATATATCCGGG
CTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:33273105 original size:47 final size:47
Alignment explanation
Indices: 33273051--33273554 Score: 810
Period size: 47 Copynumber: 10.6 Consensus size: 47
33273041 TATTTGAATA
* *
33273051 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
33273098 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
33273147 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
33273194 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
33273243 AATGTGAAAGTGTATTATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTA-TATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
33273291 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
33273338 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
33273387 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
33273434 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
33273481 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
33273528 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
33273555 TCCCGAAGGG
Statistics
Matches: 428, Mismatches: 22, Indels: 14
0.92 0.05 0.03
Matches are distributed among these distances:
47 246 0.57
48 47 0.11
49 135 0.32
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:33273159 original size:96 final size:94
Alignment explanation
Indices: 33273051--33273554 Score: 810
Period size: 96 Copynumber: 5.3 Consensus size: 94
33273041 TATTTGAATA
* *
33273051 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
33273116 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
* *
33273147 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
33273212 TATGTGATAAGGCCTAATGGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
33273243 AATGTGAAAGTGTATTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
1 AATGTGAAAGTGTA-TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
* *
33273308 ATGTGATAAGGCCGAATGGCCAATGTGATG
65 ATGTGATAAGGCCTAATGGCCGATGTGATG
33273338 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
33273403 TATGTGATAAGGCCTAATAGCCGATGTGATG
64 TATGTGATAAGGCCTAATGGCCGATGTGATG
33273434 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
* * * * * *
33273499 TGTGACAGGGCCGAGTGGCCAACGTGATG
66 TGTGATAAGGCCTAATGGCCGATGTGATG
* *
33273528 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
33273555 TCCCGAAGGG
Statistics
Matches: 389, Mismatches: 16, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
94 100 0.26
95 45 0.12
96 199 0.51
97 45 0.12
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (94 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
TGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:33276032 original size:51 final size:45
Alignment explanation
Indices: 33275977--33276098 Score: 145
Period size: 45 Copynumber: 2.6 Consensus size: 45
33275967 GGTCTCAAGA
* *
33275977 CGCCCTTTGCGGGTTTTCACATTGGCCTATCCTTTTTTTTAGGACTCAAAT
1 CGCCCTTTGCGGGTTTTCACATTGG----T--TTCTTTTTAGGACTCAAAG
*
33276028 CGCCCTTTGCGAGTTTTCACATTGGTTTCTTTTTAGGACTCAAAG
1 CGCCCTTTGCGGGTTTTCACATTGGTTTCTTTTTAGGACTCAAAG
* *
33276073 CGCCCTTTACGGGTTTTCACCTTGGT
1 CGCCCTTTGCGGGTTTTCACATTGGT
33276099 CCCTTCTCCT
Statistics
Matches: 65, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
45 40 0.62
47 1 0.02
51 24 0.37
ACGTcount: A:0.15, C:0.25, G:0.20, T:0.40
Consensus pattern (45 bp):
CGCCCTTTGCGGGTTTTCACATTGGTTTCTTTTTAGGACTCAAAG
Found at i:33277073 original size:12 final size:12
Alignment explanation
Indices: 33277058--33277098 Score: 50
Period size: 11 Copynumber: 3.6 Consensus size: 12
33277048 CTTTGGCCTC
33277058 TCCTTTTTCTTT
1 TCCTTTTTCTTT
33277070 TCCTTTTT-TTT
1 TCCTTTTTCTTT
*
33277081 TCC-TTCTCTTT
1 TCCTTTTTCTTT
*
33277092 TTCTTTT
1 TCCTTTT
33277099 CTTCTTCTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
10 3 0.12
11 11 0.46
12 10 0.42
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TCCTTTTTCTTT
Found at i:33277082 original size:16 final size:17
Alignment explanation
Indices: 33277061--33277106 Score: 51
Period size: 16 Copynumber: 2.7 Consensus size: 17
33277051 TGGCCTCTCC
33277061 TTTTTCTTTTC-CTTTT
1 TTTTTCTTTTCTCTTTT
*
33277077 TTTTTC-CTTCTCTTTT
1 TTTTTCTTTTCTCTTTT
33277093 TCTTTTCTTCTTCT
1 T-TTTTCTT-TTCT
33277107 ATCATTTTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
15 3 0.12
16 12 0.50
17 5 0.21
19 4 0.17
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (17 bp):
TTTTTCTTTTCTCTTTT
Found at i:33277814 original size:52 final size:52
Alignment explanation
Indices: 33277752--33277852 Score: 184
Period size: 52 Copynumber: 1.9 Consensus size: 52
33277742 AGTCTGGAGA
33277752 TAGGCTACAATCTATGTCATCTTCAAAGTCCTAAGATCCCTCTAAACACGTG
1 TAGGCTACAATCTATGTCATCTTCAAAGTCCTAAGATCCCTCTAAACACGTG
* *
33277804 TAGGCTACAATCTATGTCATCTTCAAAGTCTTGAGATCCCTCTAAACAC
1 TAGGCTACAATCTATGTCATCTTCAAAGTCCTAAGATCCCTCTAAACAC
33277853 ATGTCTTGTT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.30
Consensus pattern (52 bp):
TAGGCTACAATCTATGTCATCTTCAAAGTCCTAAGATCCCTCTAAACACGTG
Found at i:33279021 original size:19 final size:20
Alignment explanation
Indices: 33278997--33279043 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
33278987 TGGTGGACTT
* *
33278997 TAATGCATATG-ATGCAATG
1 TAATGCAAATGCATGAAATG
33279016 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
33279036 -AATGCAAA
1 TAATGCAAA
33279044 AAGGTGTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.45, C:0.11, G:0.19, T:0.26
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:33281453 original size:15 final size:15
Alignment explanation
Indices: 33281446--33281481 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
33281436 TAATAATATC
33281446 AATAATAATAAGAGT
1 AATAATAATAAGAGT
*
33281461 AATAATAATAAATAGT
1 AATAATAAT-AAGAGT
33281477 AATAA
1 AATAA
33281482 ATTAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.64, C:0.00, G:0.08, T:0.28
Consensus pattern (15 bp):
AATAATAATAAGAGT
Found at i:33290286 original size:28 final size:28
Alignment explanation
Indices: 33290223--33290320 Score: 171
Period size: 28 Copynumber: 3.5 Consensus size: 28
33290213 ATATTAAGTC
*
33290223 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
33290250 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
33290278 CGCACACTTAATGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
33290306 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
33290321 GTACAATTTA
Statistics
Matches: 67, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
27 22 0.33
28 45 0.67
ACGTcount: A:0.34, C:0.28, G:0.11, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:33295915 original size:22 final size:22
Alignment explanation
Indices: 33295873--33295915 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
33295863 TTAACCAAAT
*
33295873 TTGCATGTTGAATTAAAAAAAG
1 TTGCATGTTGAATAAAAAAAAG
33295895 TTGCATGTT-AATAAAAGAAAA
1 TTGCATGTTGAATAAAA-AAAA
33295916 TATCTTAGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.49, C:0.05, G:0.16, T:0.30
Consensus pattern (22 bp):
TTGCATGTTGAATAAAAAAAAG
Found at i:33296729 original size:5 final size:5
Alignment explanation
Indices: 33296719--33296748 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
33296709 AATAGAGTAT
33296719 AGAAG AGAAG AGAAG AGAAG AGAAG AGAAG
1 AGAAG AGAAG AGAAG AGAAG AGAAG AGAAG
33296749 GCAAAAGGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (5 bp):
AGAAG
Found at i:33297232 original size:3 final size:3
Alignment explanation
Indices: 33297226--33297258 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
33297216 CATGTTGTTG
33297226 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
33297259 GATGCAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:33297524 original size:12 final size:13
Alignment explanation
Indices: 33297497--33297540 Score: 63
Period size: 14 Copynumber: 3.3 Consensus size: 13
33297487 TGTAATGATA
33297497 TTATTGTACTATAT
1 TTATTGTA-TATAT
33297511 TTATTGTA-ATAT
1 TTATTGTATATAT
33297523 TTATTGTATTATAT
1 TTATTGTA-TATAT
33297537 TTAT
1 TTAT
33297541 GTGTTTTGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
12 12 0.43
14 16 0.57
ACGTcount: A:0.30, C:0.02, G:0.07, T:0.61
Consensus pattern (13 bp):
TTATTGTATATAT
Found at i:33297529 original size:26 final size:28
Alignment explanation
Indices: 33297486--33297540 Score: 87
Period size: 26 Copynumber: 2.0 Consensus size: 28
33297476 TTTAGTTTTT
33297486 TTGTAATGATATTATTGTACTATATTTA
1 TTGTAATGATATTATTGTACTATATTTA
*
33297514 TTGTAAT-AT-TTATTGTATTATATTTA
1 TTGTAATGATATTATTGTACTATATTTA
33297540 T
1 T
33297541 GTGTTTTGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 17 0.65
27 2 0.08
28 7 0.27
ACGTcount: A:0.31, C:0.02, G:0.09, T:0.58
Consensus pattern (28 bp):
TTGTAATGATATTATTGTACTATATTTA
Found at i:33302518 original size:14 final size:14
Alignment explanation
Indices: 33302499--33302525 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
33302489 GAATTTTCTC
33302499 AATTTTTTTGCACT
1 AATTTTTTTGCACT
33302513 AATTTTTTTGCAC
1 AATTTTTTTGCAC
33302526 AAAACACTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.15, G:0.07, T:0.56
Consensus pattern (14 bp):
AATTTTTTTGCACT
Found at i:33302712 original size:21 final size:21
Alignment explanation
Indices: 33302673--33302712 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
33302663 ACCACCAAAT
* *
33302673 CGTATTTGACCGATCTAAACC
1 CGTATTTAACCGATATAAACC
*
33302694 CGTATTTAACCTATATAAA
1 CGTATTTAACCGATATAAA
33302713 TAACTCATTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.23, G:0.10, T:0.33
Consensus pattern (21 bp):
CGTATTTAACCGATATAAACC
Found at i:33303165 original size:13 final size:14
Alignment explanation
Indices: 33303149--33303177 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
33303139 AATTGATTTT
33303149 TTAAATTAA-TAAA
1 TTAAATTAATTAAA
33303162 TTAAATTAATTAAA
1 TTAAATTAATTAAA
33303176 TT
1 TT
33303178 TTCTAAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (14 bp):
TTAAATTAATTAAA
Found at i:33303617 original size:3 final size:3
Alignment explanation
Indices: 33303609--33303708 Score: 191
Period size: 3 Copynumber: 33.3 Consensus size: 3
33303599 GTGCGTCCAT
*
33303609 TTC TTC TTC TTC TCC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
33303657 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
33303705 TTC T
1 TTC T
33303709 CCTTTTTTTC
Statistics
Matches: 95, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
3 95 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TTC
Found at i:33305915 original size:21 final size:21
Alignment explanation
Indices: 33305873--33305915 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
33305863 CCAAAATCAA
* *
33305873 ACATTTAAATAACTTCACAAC
1 ACATTCAAATAACTTCAAAAC
33305894 ACATTCAAATAAGCTT-AAAAC
1 ACATTCAAATAA-CTTCAAAAC
33305915 A
1 A
33305916 TACCAAATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.51, C:0.21, G:0.02, T:0.26
Consensus pattern (21 bp):
ACATTCAAATAACTTCAAAAC
Found at i:33307594 original size:59 final size:60
Alignment explanation
Indices: 33307531--33307652 Score: 237
Period size: 59 Copynumber: 2.0 Consensus size: 60
33307521 ATATCTCATG
33307531 CATTTAAATCATACATAAACTTAATATCTCAACACATTATATCATTCAGTCAAACATT-T
1 CATTTAAATCATACATAAACTTAATATCTCAACACATTATATCATTCAGTCAAACATTCT
33307590 CATTTAAATCATACATAAACTTAATATCTCAACACATTATATCATTCAGTCAAACATTCT
1 CATTTAAATCATACATAAACTTAATATCTCAACACATTATATCATTCAGTCAAACATTCT
33307650 CAT
1 CAT
33307653 ATCTCATAAC
Statistics
Matches: 62, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
59 58 0.94
60 4 0.06
ACGTcount: A:0.42, C:0.21, G:0.02, T:0.35
Consensus pattern (60 bp):
CATTTAAATCATACATAAACTTAATATCTCAACACATTATATCATTCAGTCAAACATTCT
Found at i:33311887 original size:19 final size:19
Alignment explanation
Indices: 33311859--33311900 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
33311849 TTTCATGCAC
* *
33311859 ACACAGTTCCACTAATCAG
1 ACACAATTCCACTAATCAA
33311878 ACACAATTCCACTAATCAA
1 ACACAATTCCACTAATCAA
33311897 ACAC
1 ACAC
33311901 CATTAACGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.43, C:0.33, G:0.05, T:0.19
Consensus pattern (19 bp):
ACACAATTCCACTAATCAA
Found at i:33322116 original size:12 final size:12
Alignment explanation
Indices: 33322086--33322110 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33322076 TAACGATTAT
33322086 TTATTTGTTTGC
1 TTATTTGTTTGC
33322098 TTATTTGTTTGC
1 TTATTTGTTTGC
33322110 T
1 T
33322111 CTTTTGAGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.16, T:0.68
Consensus pattern (12 bp):
TTATTTGTTTGC
Found at i:33328169 original size:44 final size:44
Alignment explanation
Indices: 33328138--33328425 Score: 342
Period size: 44 Copynumber: 6.5 Consensus size: 44
33328128 TCTAGTCTAT
*
33328138 TACAACTTCAATGAGATAAGATTTGTAGCTTCAATCTGCTCCAC
1 TACAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTGCTCCAC
* * * *
33328182 TGCAACTTGAAGGAGATAAGATTTGCTATCTTCAATCTGGTCCAC
1 TACAACTTCAAGGAGATAAGATTTG-TAGCTTCAATCTGCTCCAC
* * * *
33328227 TACAACTTCAGGGAGATAAGATTTGTAGTTTTAATCTGATCCAC
1 TACAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTGCTCCAC
* * * *
33328271 TGCAACTTCAGGGAGATAAGATTTGTGGCTTTAATCTGCTCCAC
1 TACAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTGCTCCAC
* * * * *
33328315 TACAACTTCAAGGAGATATGATTTGTGGCTTTAATATACTCCAC
1 TACAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTGCTCCAC
* * * **
33328359 TGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATTTAATCCAC
1 TACAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTGCTCCAC
* *
33328403 TACAACTTTAGGGAGATAAGATT
1 TACAACTTCAAGGAGATAAGATT
33328426 CGTTATGATG
Statistics
Matches: 213, Mismatches: 30, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
44 174 0.82
45 39 0.18
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32
Consensus pattern (44 bp):
TACAACTTCAAGGAGATAAGATTTGTAGCTTCAATCTGCTCCAC
Found at i:33328348 original size:88 final size:88
Alignment explanation
Indices: 33328138--33328425 Score: 380
Period size: 88 Copynumber: 3.3 Consensus size: 88
33328128 TCTAGTCTAT
* * * * *
33328138 TACAACTTCAATGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTGAAGGAGATAAGA
1 TACAACTTCAAGGAGATAAGATTTGTAGCTTTAATCTGATCCACTGCAACTTCAGGGAGATAAGA
* *
33328203 TTTGCTATCTTCAATCTGGTCCAC
66 TTTG-TAGCTTCAATCTGATCCAC
* *
33328227 TACAACTTCAGGGAGATAAGATTTGTAGTTTTAATCTGATCCACTGCAACTTCAGGGAGATAAGA
1 TACAACTTCAAGGAGATAAGATTTGTAGCTTTAATCTGATCCACTGCAACTTCAGGGAGATAAGA
* * *
33328292 TTTGTGGCTTTAATCTGCTCCAC
66 TTTGTAGCTTCAATCTGATCCAC
* * *
33328315 TACAACTTCAAGGAGATATGATTTGTGGCTTTAATAT-ACTCCACTGCAACTTCAGGGAGATAAG
1 TACAACTTCAAGGAGATAAGATTTGTAGCTTTAATCTGA-TCCACTGCAACTTCAGGGAGATAAG
* *
33328379 ATTTGTAGCTTCAATTTAATCCAC
65 ATTTGTAGCTTCAATCTGATCCAC
* *
33328403 TACAACTTTAGGGAGATAAGATT
1 TACAACTTCAAGGAGATAAGATT
33328426 CGTTATGATG
Statistics
Matches: 174, Mismatches: 24, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
87 1 0.01
88 111 0.64
89 62 0.36
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32
Consensus pattern (88 bp):
TACAACTTCAAGGAGATAAGATTTGTAGCTTTAATCTGATCCACTGCAACTTCAGGGAGATAAGA
TTTGTAGCTTCAATCTGATCCAC
Found at i:33328416 original size:132 final size:133
Alignment explanation
Indices: 33328138--33328425 Score: 389
Period size: 132 Copynumber: 2.2 Consensus size: 133
33328128 TCTAGTCTAT
** * *
33328138 TACAACTTCAATGAGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTGAAGGAGATAAGA
1 TACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTACAACTTCAAGGAGATAAGA
* * ** * * *
33328203 TTTGCTATCTTCAATCTGGTCCACTACAACTTCAGGGAGATAAGATTTGTAGTTTTAATCTGATC
66 TTTGCTAGCTTCAATATACTCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTAATC
33328268 CAC
131 CAC
* * * *
33328271 TGCAACTTCAGGGAGATAAGATTTGTGGCTTTAATCTGCTCCACTACAACTTCAAGGAGATATGA
1 TACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTACAACTTCAAGGAGATAAGA
* * * *
33328336 TTTG-TGGCTTTAATATACTCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTCAATTTAATC
66 TTTGCTAGCTTCAATATACTCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTAATC
33328400 CAC
131 CAC
*
33328403 TACAACTTTAGGGAGATAAGATT
1 TACAACTTCAGGGAGATAAGATT
33328426 CGTTATGATG
Statistics
Matches: 134, Mismatches: 21, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
132 73 0.54
133 61 0.46
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32
Consensus pattern (133 bp):
TACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTGCTCCACTACAACTTCAAGGAGATAAGA
TTTGCTAGCTTCAATATACTCCACTACAACTTCAGGGAGATAAGATTTGTAGCTTCAATCTAATC
CAC
Found at i:33336346 original size:19 final size:20
Alignment explanation
Indices: 33336324--33336374 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
33336314 GGGTCTTTTT
*
33336324 ATGAAATTTAATGCAT-ATG-
1 ATGAAATGTAATGC-TGATGA
33336343 ATGAAATGTAATGCTGATGA
1 ATGAAATGTAATGCTGATGA
33336363 ATGAAATG-AATG
1 ATGAAATGTAATG
33336375 AAAAAAGATG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 1 0.03
19 20 0.69
20 8 0.28
ACGTcount: A:0.43, C:0.04, G:0.22, T:0.31
Consensus pattern (20 bp):
ATGAAATGTAATGCTGATGA
Found at i:33336463 original size:20 final size:19
Alignment explanation
Indices: 33336417--33336464 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 19
33336407 TTAGAACAAC
* *
33336417 TTTACTATAAAACAAATCTC
1 TTTAC-ATAAAACAAATATA
33336437 TTTACATAAAACAAATATA
1 TTTACATAAAACAAATATA
33336456 TATTACATA
1 T-TTACATA
33336465 TGCAATCTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 13 0.52
20 12 0.48
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (19 bp):
TTTACATAAAACAAATATA
Found at i:33342803 original size:40 final size:39
Alignment explanation
Indices: 33342733--33342845 Score: 109
Period size: 40 Copynumber: 2.8 Consensus size: 39
33342723 GCGTTTGGAT
* * * *
33342733 AAAAAACGCCACTAAAAATTAATCACTAGCGGCGCTTTAA
1 AAAAAACGCCGCTAAAAA-TGAGCATTAGCGGCGCTTTAA
* * **
33342773 AAAAAACGCCGCTAAAGATCGAGTATTAGCGGCGCTTTTC
1 AAAAAACGCCGCTAAAAAT-GAGCATTAGCGGCGCTTTAA
** *
33342813 GGAAAACGCCTCTAAAAATGAGCATTAGCGGCG
1 AAAAAACGCCGCTAAAAATGAGCATTAGCGGCG
33342846 TTTTCCAATA
Statistics
Matches: 59, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
39 14 0.24
40 45 0.76
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.19
Consensus pattern (39 bp):
AAAAAACGCCGCTAAAAATGAGCATTAGCGGCGCTTTAA
Found at i:33343359 original size:7 final size:7
Alignment explanation
Indices: 33343341--33343394 Score: 63
Period size: 7 Copynumber: 7.6 Consensus size: 7
33343331 GAGTTACTAT
*
33343341 TTTAAGG
1 TTTATGG
33343348 TTTATGG
1 TTTATGG
*
33343355 ATTATGGG
1 TTTAT-GG
*
33343363 TTTAGGG
1 TTTATGG
*
33343370 GTTATGG
1 TTTATGG
33343377 TTTATGG
1 TTTATGG
33343384 TTTATGG
1 TTTATGG
33343391 TTTA
1 TTTA
33343395 AAGGTTGGGG
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
7 34 0.87
8 5 0.13
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (7 bp):
TTTATGG
Found at i:33343406 original size:21 final size:21
Alignment explanation
Indices: 33343382--33343421 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
33343372 TATGGTTTAT
*
33343382 GGTTTATGGTTTAAAGGTTGG
1 GGTTTAAGGTTTAAAGGTTGG
*
33343403 GGTTTAAGGTTTAGAGGTT
1 GGTTTAAGGTTTAAAGGTT
33343422 ATGTGTTAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.20, C:0.00, G:0.38, T:0.42
Consensus pattern (21 bp):
GGTTTAAGGTTTAAAGGTTGG
Found at i:33345275 original size:41 final size:41
Alignment explanation
Indices: 33344929--33345272 Score: 499
Period size: 41 Copynumber: 8.4 Consensus size: 41
33344919 GATTCACTGT
* * * * *
33344929 CACTTAGCTTGTTAGGCTTAAAACCTGATTTAGATCACCGG
1 CACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGG
* * *
33344970 CACTTAGCCTGCTAGGCTTATAGCCTAATCCAGTTCACCGG
1 CACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGG
*
33345011 CACTTAGCCTGCTAGGCTTATAGCCTGATTCAAATCACCGG
1 CACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGG
* * * *
33345052 CATTTAGCCTGCTAGGCTTATAGCCTAATTCAAATCATCGG
1 CACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGG
*
33345093 CACTTAGCCTGCTAGGCTTATAGCCTGATTCAGTTCACCGG
1 CACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGG
*
33345134 CACTTAGCCTGCTAGGCTTATAGCCTGATTCAGTTCACCGG
1 CACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGG
* *
33345175 CACTTAGCCTGCTAGGCTTATAACCTGATTTAGATCACCGG
1 CACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGG
* * *
33345216 CACTTAGCCTGCTAGGTTTATAACCTGATTTAGATCACCGG
1 CACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGG
*
33345257 TACTTAGCCTGCTAGG
1 CACTTAGCCTGCTAGG
33345273 TTTTAAAACC
Statistics
Matches: 278, Mismatches: 25, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 278 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (41 bp):
CACTTAGCCTGCTAGGCTTATAGCCTGATTCAGATCACCGG
Found at i:33347781 original size:13 final size:15
Alignment explanation
Indices: 33347753--33347784 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
33347743 CTCGTATTAT
33347753 TATTAATTTAATATA
1 TATTAATTTAATATA
33347768 TATTAA-TT-ATATA
1 TATTAATTTAATATA
33347781 TATT
1 TATT
33347785 TTCCATTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 9 0.53
14 2 0.12
15 6 0.35
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATTAATTTAATATA
Found at i:33348720 original size:21 final size:20
Alignment explanation
Indices: 33348696--33348733 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
33348686 CTTTTACTAT
33348696 TTTTCCTTAACTTTGTTTTGC
1 TTTTCCTTAA-TTTGTTTTGC
*
33348717 TTTTCGTTAATTT-TTTT
1 TTTTCCTTAATTTGTTTT
33348734 TCCTTATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 3 0.19
21 9 0.56
ACGTcount: A:0.11, C:0.13, G:0.08, T:0.68
Consensus pattern (20 bp):
TTTTCCTTAATTTGTTTTGC
Found at i:33350229 original size:29 final size:29
Alignment explanation
Indices: 33350187--33350244 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
33350177 CGCCAGAGGG
*
33350187 TTTCTATTGAAGAATGCAAGAAAAACTTA
1 TTTCTATTGAAGAACGCAAGAAAAACTTA
33350216 TTTCTATTGAAGAACGCAAGAAAAACTTA
1 TTTCTATTGAAGAACGCAAGAAAAACTTA
33350245 AGGAAATATG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.29
Consensus pattern (29 bp):
TTTCTATTGAAGAACGCAAGAAAAACTTA
Found at i:33351666 original size:43 final size:43
Alignment explanation
Indices: 33351561--33351830 Score: 215
Period size: 43 Copynumber: 6.3 Consensus size: 43
33351551 AAGATATGTT
* * *
33351561 TTTAGCGGTGTTTGTGTGAAAAGCGCCACTAAAGGTT-TGATA
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGGTTATGATC
* * **
33351603 TTGAGCGGCGTTTGTGGGAAAAGCGTCGTTAAAGGTTATGATC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGGTTATGATC
* * * * *
33351646 TTTAGCGGTGTTTGTAGGAAAAGCGCCGCTAAAGGTTTTGTTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGGTTATGATC
* * ** * * * * *
33351689 TATAACGGCGTTTGTGTAAAAAGTGTCATTAAAAGTTGTGATC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGGTTATGATC
* * * *
33351732 TTTAACGGCGTTTGTGGGATAAGCGTCACTAAAGGCCCTAT--TC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGG--TTATGATC
* ** *
33351775 TATAGCGGCGTTTGTGGGAAAAGCGCCGGTAAAGGTCT-TGTTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGGT-TATGATC
*
33351818 TATAGCGGCGTTT
1 TTTAGCGGCGTTT
33351831 ATTGCTAAAA
Statistics
Matches: 179, Mismatches: 43, Indels: 11
0.77 0.18 0.05
Matches are distributed among these distances:
41 1 0.01
42 32 0.18
43 144 0.80
45 2 0.01
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.32
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCACTAAAGGTTATGATC
Found at i:33351745 original size:86 final size:84
Alignment explanation
Indices: 33351561--33351799 Score: 255
Period size: 86 Copynumber: 2.8 Consensus size: 84
33351551 AAGATATGTT
* * *
33351561 TTTAGCGGTGTTTGTGTGAAAAGCGCCACTAAAGGTTTGATAT-TGAGCGGCGTTTGTGGGAAAA
1 TTTAGCGGTGTTTGTG-GAAAAGCGCCACTAAAGGTTTGTTCTAT-AGCGGCGTTTGTGGAAAAA
* *
33351625 GCGTCGTTAAAGGTTATGATC
64 GCGTCATTAAAAGTTATGATC
* * *
33351646 TTTAGCGGTGTTTGTAGGAAAAGCGCCGCTAAAGGTTTTGTTCTATAACGGCGTTTGTGTAAAAA
1 TTTAGCGGTGTTTGT-GGAAAAGCGCCACTAAAGG-TTTGTTCTATAGCGGCGTTTGTGGAAAAA
* *
33351711 GTGTCATTAAAAGTTGTGATC
64 GCGTCATTAAAAGTTATGATC
* * * * ** * *
33351732 TTTAACGGCGTTTGTGGGATAAGCGTCACTAAAGGCCCTATTCTATAGCGGCGTTTGTGGGAAAA
1 TTTAGCGGTGTTTGT-GGAAAAGCGCCACTAAAGG-TTTGTTCTATAGCGGCGTTTGTGGAAAAA
33351797 GCG
64 GCG
33351800 CCGGTAAAGG
Statistics
Matches: 127, Mismatches: 24, Indels: 5
0.81 0.15 0.03
Matches are distributed among these distances:
85 32 0.25
86 94 0.74
87 1 0.01
ACGTcount: A:0.25, C:0.13, G:0.30, T:0.32
Consensus pattern (84 bp):
TTTAGCGGTGTTTGTGGAAAAGCGCCACTAAAGGTTTGTTCTATAGCGGCGTTTGTGGAAAAAGC
GTCATTAAAAGTTATGATC
Found at i:33351827 original size:86 final size:86
Alignment explanation
Indices: 33351561--33351830 Score: 246
Period size: 86 Copynumber: 3.2 Consensus size: 86
33351551 AAGATATGTT
* *
33351561 TTTAGCGGTGTTTGT-GTGAAAAGCGCCACTAAAGG---T-TTGATATTGAGCGGCGTTTGTGGG
1 TTTAGCGGCGTTTGTAG-GAAAAGCGCCACTAAAGGCCCTATT-CTA-T-AGCGGCGTTTGTGGG
33351621 AAAAGCGTCGTTAAAGGTTATGATC
62 AAAAGCGTCGTTAAAGGTTATGATC
* * *** * * **
33351646 TTTAGCGGTGTTTGTAGGAAAAGCGCCGCTAAAGGTTTTGTTCTATAACGGCGTTTGTGTAAAAA
1 TTTAGCGGCGTTTGTAGGAAAAGCGCCACTAAAGGCCCTATTCTATAGCGGCGTTTGTGGGAAAA
* * * *
33351711 GTGTCATTAAAAGTTGTGATC
66 GCGTCGTTAAAGGTTATGATC
* * * *
33351732 TTTAACGGCGTTTGTGGGATAAGCGTCACTAAAGGCCCTATTCTATAGCGGCGTTTGTGGGAAAA
1 TTTAGCGGCGTTTGTAGGAAAAGCGCCACTAAAGGCCCTATTCTATAGCGGCGTTTGTGGGAAAA
* * *
33351797 GCGCCGGTAAAGGTCT-TGTTC
66 GCGTCGTTAAAGGT-TATGATC
*
33351818 TATAGCGGCGTTT
1 TTTAGCGGCGTTT
33351831 ATTGCTAAAA
Statistics
Matches: 149, Mismatches: 30, Indels: 11
0.78 0.16 0.06
Matches are distributed among these distances:
85 32 0.21
86 110 0.74
87 2 0.01
88 3 0.02
89 2 0.01
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.32
Consensus pattern (86 bp):
TTTAGCGGCGTTTGTAGGAAAAGCGCCACTAAAGGCCCTATTCTATAGCGGCGTTTGTGGGAAAA
GCGTCGTTAAAGGTTATGATC
Found at i:33353353 original size:19 final size:19
Alignment explanation
Indices: 33353329--33353365 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
33353319 TGATGAAAAT
*
33353329 AGGAACTACACTATTTTAA
1 AGGAACAACACTATTTTAA
*
33353348 AGGAACAACGCTATTTTA
1 AGGAACAACACTATTTTA
33353366 GAGTGACCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.30
Consensus pattern (19 bp):
AGGAACAACACTATTTTAA
Found at i:33354653 original size:51 final size:51
Alignment explanation
Indices: 33354590--33354732 Score: 200
Period size: 51 Copynumber: 2.8 Consensus size: 51
33354580 TAAAAGTGAA
*
33354590 AGTGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTA-CTGGAT
1 AGTGATGATCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTATC-GGAT
* * *
33354641 AGCT-TTGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAT
1 AG-TGATGATCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTATCGGAT
* *
33354692 AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTATG
1 AGTGATGATCACGTGTGTAGTACTATGTGCAGGCTACTATG
33354733 TGAACTGATA
Statistics
Matches: 81, Mismatches: 8, Indels: 6
0.85 0.08 0.06
Matches are distributed among these distances:
50 1 0.01
51 78 0.96
52 2 0.02
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.32
Consensus pattern (51 bp):
AGTGATGATCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTATCGGAT
Found at i:33354734 original size:26 final size:26
Alignment explanation
Indices: 33354654--33354734 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
33354644 TTTGATCACG
33354654 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* *
33354680 CGTGTA-T-CGGATAGTG-ATGG-TCAC-A
1 TGTGTAGTAC-TAT-GTGCA-GGCT-ACTA
33354705 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
33354731 TGTG
1 TGTG
33354735 AACTGATATC
Statistics
Matches: 42, Mismatches: 4, Indels: 18
0.66 0.06 0.28
Matches are distributed among these distances:
24 1 0.02
25 18 0.43
26 22 0.52
27 1 0.02
ACGTcount: A:0.22, C:0.15, G:0.30, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:33354979 original size:16 final size:16
Alignment explanation
Indices: 33354958--33354989 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
33354948 TGATTGAAAG
*
33354958 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
33354974 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
33354990 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:33357581 original size:29 final size:30
Alignment explanation
Indices: 33357508--33357585 Score: 95
Period size: 31 Copynumber: 2.6 Consensus size: 30
33357498 TTAATTTTTG
* * * *
33357508 AAAAGTAAAGGTACTAAAATTTATCAATTCA
1 AAAAGTACAGGGACTAAAATTGATCAAAT-A
*
33357539 AAAAGTACAAGGACTAAAATTGATCAAAT-
1 AAAAGTACAGGGACTAAAATTGATCAAATA
33357568 AAAAGTACAGGGACTAAA
1 AAAAGTACAGGGACTAAA
33357586 TTTGTAACTT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
29 17 0.41
31 24 0.59
ACGTcount: A:0.54, C:0.10, G:0.14, T:0.22
Consensus pattern (30 bp):
AAAAGTACAGGGACTAAAATTGATCAAATA
Found at i:33371921 original size:9 final size:9
Alignment explanation
Indices: 33371907--33371955 Score: 62
Period size: 9 Copynumber: 5.4 Consensus size: 9
33371897 AACATCACCA
*
33371907 TCCTCATTG
1 TCCTCATCG
33371916 TCCTCATCG
1 TCCTCATCG
* *
33371925 TCGTCGTCG
1 TCCTCATCG
*
33371934 TCCTCACCG
1 TCCTCATCG
33371943 TCCTCATCG
1 TCCTCATCG
33371952 TCCT
1 TCCT
33371956 TTTTGCAACC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.08, C:0.43, G:0.14, T:0.35
Consensus pattern (9 bp):
TCCTCATCG
Found at i:33371938 original size:18 final size:18
Alignment explanation
Indices: 33371901--33371955 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 18
33371891 CAAAGAAACA
* *
33371901 TCACCATCCTCATTGTCC
1 TCACCGTCCTCATCGTCC
* * *
33371919 TCATCGTCGTCGTCGTCC
1 TCACCGTCCTCATCGTCC
33371937 TCACCGTCCTCATCGTCC
1 TCACCGTCCTCATCGTCC
33371955 T
1 T
33371956 TTTTGCAACC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.11, C:0.44, G:0.13, T:0.33
Consensus pattern (18 bp):
TCACCGTCCTCATCGTCC
Found at i:33374048 original size:13 final size:13
Alignment explanation
Indices: 33374030--33374123 Score: 116
Period size: 13 Copynumber: 7.1 Consensus size: 13
33374020 ATTAAAAGTC
*
33374030 AAAACATTATATT
1 AAAACAGTATATT
33374043 AAAACAGTATATTT
1 AAAACAGTATA-TT
*
33374057 ATAACAGTATATT
1 AAAACAGTATATT
*
33374070 AAAACAATATATT
1 AAAACAGTATATT
*
33374083 AAAAAAGTATATTT
1 AAAACAGTATA-TT
* *
33374097 ATAATAGTATATT
1 AAAACAGTATATT
33374110 AAAACAGTATATT
1 AAAACAGTATATT
33374123 A
1 A
33374124 CATTAAAAAT
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
13 46 0.67
14 23 0.33
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.36
Consensus pattern (13 bp):
AAAACAGTATATT
Found at i:33374067 original size:27 final size:26
Alignment explanation
Indices: 33374030--33374123 Score: 116
Period size: 27 Copynumber: 3.5 Consensus size: 26
33374020 ATTAAAAGTC
*
33374030 AAAACATTATATTAAAACAGTATATTT
1 AAAACAGTATATTAAAACAGTATA-TT
* *
33374057 ATAACAGTATATTAAAACAATATATT
1 AAAACAGTATATTAAAACAGTATATT
* * *
33374083 AAAAAAGTATATTTATAATAGTATATT
1 AAAACAGTATA-TTAAAACAGTATATT
33374110 AAAACAGTATATTA
1 AAAACAGTATATTA
33374124 CATTAAAAAT
Statistics
Matches: 57, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
26 14 0.25
27 43 0.75
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.36
Consensus pattern (26 bp):
AAAACAGTATATTAAAACAGTATATT
Found at i:33374085 original size:40 final size:40
Alignment explanation
Indices: 33374030--33374123 Score: 152
Period size: 40 Copynumber: 2.4 Consensus size: 40
33374020 ATTAAAAGTC
* *
33374030 AAAACATTATATTAAAACAGTATATTTATAACAGTATATT
1 AAAACAATATATTAAAAAAGTATATTTATAACAGTATATT
*
33374070 AAAACAATATATTAAAAAAGTATATTTATAATAGTATATT
1 AAAACAATATATTAAAAAAGTATATTTATAACAGTATATT
*
33374110 AAAACAGTATATTA
1 AAAACAATATATTA
33374124 CATTAAAAAT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.53, C:0.05, G:0.05, T:0.36
Consensus pattern (40 bp):
AAAACAATATATTAAAAAAGTATATTTATAACAGTATATT
Found at i:33380128 original size:13 final size:13
Alignment explanation
Indices: 33380110--33380134 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33380100 TTGATTTGAT
33380110 TTGATTATGTAAA
1 TTGATTATGTAAA
33380123 TTGATTATGTAA
1 TTGATTATGTAA
33380135 TCTTGTAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (13 bp):
TTGATTATGTAAA
Found at i:33383629 original size:172 final size:172
Alignment explanation
Indices: 33383336--33383680 Score: 627
Period size: 172 Copynumber: 2.0 Consensus size: 172
33383326 CAACTTACGC
33383336 AGTCTTCACTAGAATGATCATAACTTGAGCTCCTGAACTCAAAATCAAGTTATTCAAAGTGAATT
1 AGTCTTCACTAGAATGATCATAACTTGAGCTCCTGAACTCAAAATCAAGTTATTCAAAGTGAATT
* * *
33383401 TTGAAGCTAAAAGATAGATATTCGAACTCTATGAAGACATCTCAACCCAGAAATGTCAAGATCCC
66 TTGAAGCTAAAAGATAGACATTCGAACTCCATGAAGACATCTCAACCCAAAAATGTCAAGATCCC
*
33383466 ATCCAAAACGTCATCACAATTCTACTGATTTTCCAAGCTTAA
131 ATCCAAAACGTCATCACAATTCTACTAATTTTCCAAGCTTAA
33383508 AGTCTTCACTAGAATGATCATAACTTGAGCTCCTGAACTCAAAATCAAGTTATTCAAAGTGAATT
1 AGTCTTCACTAGAATGATCATAACTTGAGCTCCTGAACTCAAAATCAAGTTATTCAAAGTGAATT
* *
33383573 TTGAAGCTAAAAGATAGACCTTCGAACTCCATGAAGACATTTCAACCCAAAAATGTCAAGATCCC
66 TTGAAGCTAAAAGATAGACATTCGAACTCCATGAAGACATCTCAACCCAAAAATGTCAAGATCCC
*
33383638 ATCCAAAACGTCATCACAATTCTACTAATTTTCTAAGCTTAA
131 ATCCAAAACGTCATCACAATTCTACTAATTTTCCAAGCTTAA
33383680 A
1 A
33383681 AATTGGTAGC
Statistics
Matches: 166, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
172 166 1.00
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (172 bp):
AGTCTTCACTAGAATGATCATAACTTGAGCTCCTGAACTCAAAATCAAGTTATTCAAAGTGAATT
TTGAAGCTAAAAGATAGACATTCGAACTCCATGAAGACATCTCAACCCAAAAATGTCAAGATCCC
ATCCAAAACGTCATCACAATTCTACTAATTTTCCAAGCTTAA
Found at i:33386935 original size:43 final size:43
Alignment explanation
Indices: 33386845--33386959 Score: 128
Period size: 43 Copynumber: 2.7 Consensus size: 43
33386835 AATGCAAACG
* * * *
33386845 TCCCAGACGTGGTCTTACATGTAATCACAGATCGATGCCACTC
1 TCCCAGACGTGGTCTTACACGAAAACACAAATCGATGCCACTC
*
33386888 TCCCA-AGCAG-GGTCTTACACGAAAACACAAATCGATGCCAAC-G
1 TCCCAGA-C-GTGGTCTTACACGAAAACACAAATCGATGCC-ACTC
*
33386931 TCCCAGACGTGGTCTTACACAAAAACACA
1 TCCCAGACGTGGTCTTACACGAAAACACA
33386960 TATTGGAAAT
Statistics
Matches: 61, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.03
43 55 0.90
44 4 0.07
ACGTcount: A:0.33, C:0.30, G:0.17, T:0.19
Consensus pattern (43 bp):
TCCCAGACGTGGTCTTACACGAAAACACAAATCGATGCCACTC
Found at i:33393876 original size:19 final size:20
Alignment explanation
Indices: 33393847--33393884 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
33393837 ATGAACGAAC
33393847 AAAAAAGAAAAACCGAAAGT
1 AAAAAAGAAAAACCGAAAGT
*
33393867 AAAAAA-AAAAAGCGAAAG
1 AAAAAAGAAAAACCGAAAG
33393885 ATGCAGAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 11 0.65
20 6 0.35
ACGTcount: A:0.74, C:0.08, G:0.16, T:0.03
Consensus pattern (20 bp):
AAAAAAGAAAAACCGAAAGT
Found at i:33394042 original size:22 final size:25
Alignment explanation
Indices: 33394012--33394066 Score: 64
Period size: 23 Copynumber: 2.3 Consensus size: 25
33394002 AAAAAATGTA
33394012 TTTCGTTTTT-CT-CTTATTT-TCTT
1 TTTCGTTTTTGCTGC-TATTTCTCTT
33394035 TTTC-TTTTTGCTGCTATTTCTCTTT
1 TTTCGTTTTTGCTGCTATTTCTC-TT
33394060 TTTCGTT
1 TTTCGTT
33394067 CGTTCGTTCG
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
22 5 0.19
23 11 0.41
24 3 0.11
25 6 0.22
26 2 0.07
ACGTcount: A:0.04, C:0.18, G:0.07, T:0.71
Consensus pattern (25 bp):
TTTCGTTTTTGCTGCTATTTCTCTT
Found at i:33397881 original size:23 final size:23
Alignment explanation
Indices: 33397835--33397881 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
33397825 TAAACTATAT
*
33397835 TAAATTTATTTTATAATTTTATA
1 TAAATTTATTTTATAATTTAATA
*
33397858 TAAATTTACTTTTATGA-TTAATA
1 TAAATTTA-TTTTATAATTTAATA
33397881 T
1 T
33397882 TATAACTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 14 0.67
24 7 0.33
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (23 bp):
TAAATTTATTTTATAATTTAATA
Found at i:33397913 original size:7 final size:7
Alignment explanation
Indices: 33397897--33397932 Score: 65
Period size: 7 Copynumber: 5.3 Consensus size: 7
33397887 CTAAATTTAA
33397897 TTTT-TT
1 TTTTATT
33397903 TTTTATT
1 TTTTATT
33397910 TTTTATT
1 TTTTATT
33397917 TTTTATT
1 TTTTATT
33397924 TTTTATT
1 TTTTATT
33397931 TT
1 TT
33397933 ATTTGATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 4 0.14
7 25 0.86
ACGTcount: A:0.11, C:0.00, G:0.00, T:0.89
Consensus pattern (7 bp):
TTTTATT
Found at i:33402557 original size:14 final size:15
Alignment explanation
Indices: 33402538--33402570 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
33402528 TCTACTTAAT
33402538 AATATTTTAATA-AA
1 AATATTTTAATAGAA
33402552 AATATTTTAATAGAA
1 AATATTTTAATAGAA
33402567 AATA
1 AATA
33402571 GATTTTCTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (15 bp):
AATATTTTAATAGAA
Found at i:33408045 original size:44 final size:45
Alignment explanation
Indices: 33407954--33408046 Score: 136
Period size: 44 Copynumber: 2.1 Consensus size: 45
33407944 TTCACTGAAT
*
33407954 TGGAATAGAGGCGTAATAGTAAATCAATTGTTTGGTTGAATGTAA
1 TGGAATAGAGGCGTAATAGTAAATCAATTGTTTGGTTGAATGGAA
* *
33407999 TGGAATAGAGGCGTAATAGT-ATTC-TTGTGTTTGGTTGAATGGAA
1 TGGAATAGAGGCGTAATAGTAAATCAAT-TGTTTGGTTGAATGGAA
33408043 TGGA
1 TGGA
33408047 GGTGTAATAG
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
43 1 0.02
44 23 0.52
45 20 0.45
ACGTcount: A:0.31, C:0.04, G:0.30, T:0.34
Consensus pattern (45 bp):
TGGAATAGAGGCGTAATAGTAAATCAATTGTTTGGTTGAATGGAA
Found at i:33408346 original size:59 final size:59
Alignment explanation
Indices: 33408279--33408464 Score: 145
Period size: 59 Copynumber: 3.1 Consensus size: 59
33408269 CTCAAATCAT
33408279 AATATATGATACTATAAAATATAATTTAATATAATTATTATTAAATATATTTTAATTAA
1 AATATATGATACTATAAAATATAATTTAATATAATTATTATTAAATATATTTTAATTAA
* * * * *
33408338 AATATATGAT-TTAATAAAAT-T--CTTAATAATCAA-TATTCTTATATGA-ATTTACTAAAATC
1 AATATATGATACT-ATAAAATATAATTTAAT-AT-AATTATTATTAAAT-ATATTT--T--AATT
*
33408397 AT
58 AA
* * *
33408399 AATATATGATAGTATAAAATATAATTTGAA-ATAATAATTATTAAATATAATTTAA-TAA
1 AATATATGATACTATAAAATATAATTT-AATATAATTATTATTAAATATATTTTAATTAA
33408457 TAATATAT
1 -AATATAT
33408465 AATTTCATAA
Statistics
Matches: 97, Mismatches: 14, Indels: 32
0.68 0.10 0.22
Matches are distributed among these distances:
56 5 0.05
57 15 0.15
58 6 0.06
59 27 0.28
61 22 0.23
62 5 0.05
63 13 0.13
64 2 0.02
65 2 0.02
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (59 bp):
AATATATGATACTATAAAATATAATTTAATATAATTATTATTAAATATATTTTAATTAA
Found at i:33408350 original size:18 final size:15
Alignment explanation
Indices: 33408292--33408357 Score: 50
Period size: 16 Copynumber: 4.5 Consensus size: 15
33408282 ATATGATACT
*
33408292 ATAAAATATAATTTA
1 ATAAAATATATTTTA
*
33408307 ATATAAT-TA--TT-
1 ATAAAATATATTTTA
*
33408318 ATTAAATATATTTTA
1 ATAAAATATATTTTA
33408333 ATTAAAATATATGATTTA
1 A-TAAAATATAT--TTTA
33408351 ATAAAAT
1 ATAAAAT
33408358 TCTTAATAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
11 5 0.12
12 4 0.10
14 4 0.10
15 7 0.17
16 9 0.22
17 6 0.15
18 5 0.12
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (15 bp):
ATAAAATATATTTTA
Found at i:33408396 original size:120 final size:119
Alignment explanation
Indices: 33408183--33408507 Score: 519
Period size: 120 Copynumber: 2.7 Consensus size: 119
33408173 TTAATCATAT
*
33408183 TTTAACATAATTATTATTAAATATATTTTAGTTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTTAA-ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
*
33408248 CAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
65 CAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
*
33408303 TTTAATATAATTATTATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAAT
1 TTTAA-ATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
*
33408368 CAATATTCTTATATGAATTTACTAAAATCATAATATATGATAGTATAAAATATAA
65 CAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
* * * *
33408423 TTTGAAATAATAATTATTAAATATAATTTAA-TAATAATATATAATTTCATAAAATTCTTGATAA
1 TTT-AAATAATTATTATTAAATATATTTTAATTAA-AATATATAATTTAATAAAATTCTTAATAA
*
33408487 TAAAT-TTCTTATATGAATTTA
64 TCAATATTCTTATATGAATTTA
33408508 TATAATTTAA
Statistics
Matches: 192, Mismatches: 11, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
119 19 0.10
120 171 0.89
121 2 0.01
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (119 bp):
TTTAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATC
AATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAA
Found at i:33408406 original size:61 final size:60
Alignment explanation
Indices: 33408218--33408408 Score: 198
Period size: 61 Copynumber: 3.2 Consensus size: 60
33408208 TTTTAGTTAA
*
33408218 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATGATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACT-AAATCAT
* * * * *
33408279 AATATATGATACT-ATAAAATATAATTTAAT-AT-AATTATTATTAAAT-ATATTT--T-AATTA
1 AATATATGAT-TTAATAAAAT-T--CTTAATAATCAA-TATTCTTATATGA-ATTTACTAAATCA
*
33408337 A
60 T
33408338 AATATATGATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTAAAATCAT
1 AATATATGATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACT-AAATCAT
33408399 AATATATGAT
1 AATATATGAT
33408409 AGTATAAAAT
Statistics
Matches: 103, Mismatches: 13, Indels: 28
0.72 0.09 0.19
Matches are distributed among these distances:
56 5 0.05
57 15 0.15
58 5 0.05
59 22 0.21
61 31 0.30
62 5 0.05
63 15 0.15
64 5 0.05
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.43
Consensus pattern (60 bp):
AATATATGATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTAAATCAT
Found at i:33408637 original size:91 final size:91
Alignment explanation
Indices: 33408417--33408689 Score: 478
Period size: 91 Copynumber: 3.0 Consensus size: 91
33408407 ATAGTATAAA
* *
33408417 ATATAATTTGAAATAA-TAATTATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCT
1 ATATAATTTAAAATAATTAA-TATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCT
33408481 TGATAATAAA-TTTCTTATATGAATTT
65 TGATAATAAATTTTCTTATATGAATTT
33408507 ATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTT
1 ATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTT
33408572 GATAATAAATTTTCTTATATGAATTT
66 GATAATAAATTTTCTTATATGAATTT
*
33408598 ATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATAGAATTTCATAAAATTCTT
1 ATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTT
* *
33408663 AATAATAAATATTCTTATATGAATTT
66 GATAATAAATTTTCTTATATGAATTT
33408689 A
1 A
33408690 CTAAAATCAT
Statistics
Matches: 176, Mismatches: 5, Indels: 3
0.96 0.03 0.02
Matches are distributed among these distances:
90 68 0.39
91 108 0.61
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (91 bp):
ATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTT
GATAATAAATTTTCTTATATGAATTT
Found at i:33413186 original size:53 final size:53
Alignment explanation
Indices: 33413123--33413228 Score: 194
Period size: 53 Copynumber: 2.0 Consensus size: 53
33413113 GCAGTGGATT
* *
33413123 TCAAAAACCACAACAAATGATAGGGAAAAAATGAAAAAAGAGACCGAGAGAGA
1 TCAAAAACCACAAAAAATGACAGGGAAAAAATGAAAAAAGAGACCGAGAGAGA
33413176 TCAAAAACCACAAAAAATGACAGGGAAAAAATGAAAAAAGAGACCGAGAGAGA
1 TCAAAAACCACAAAAAATGACAGGGAAAAAATGAAAAAAGAGACCGAGAGAGA
33413229 GAATCGGTAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 51 1.00
ACGTcount: A:0.59, C:0.13, G:0.21, T:0.07
Consensus pattern (53 bp):
TCAAAAACCACAAAAAATGACAGGGAAAAAATGAAAAAAGAGACCGAGAGAGA
Found at i:33420980 original size:22 final size:22
Alignment explanation
Indices: 33420955--33420997 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
33420945 TAATAAAAAG
33420955 AATATCTACAAAATATTCCTAA
1 AATATCTACAAAATATTCCTAA
* *
33420977 AATATTTACAGAATATTCCTA
1 AATATCTACAAAATATTCCTA
33420998 CACTCCCCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.02, T:0.35
Consensus pattern (22 bp):
AATATCTACAAAATATTCCTAA
Found at i:33424218 original size:22 final size:22
Alignment explanation
Indices: 33424193--33424235 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
33424183 TAATAAAAAG
33424193 AATATCTACAAAATATTCCTAA
1 AATATCTACAAAATATTCCTAA
* *
33424215 AATATTTACAGAATATTCCTA
1 AATATCTACAAAATATTCCTA
33424236 CAAGTTCAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.02, T:0.35
Consensus pattern (22 bp):
AATATCTACAAAATATTCCTAA
Found at i:33435858 original size:3 final size:3
Alignment explanation
Indices: 33435850--33435875 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
33435840 GTCATTGCCA
33435850 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
33435876 ACGACAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:33437878 original size:19 final size:21
Alignment explanation
Indices: 33437840--33437878 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
33437830 CCTTTTTTAA
*
33437840 AATCGTAAATAAGTAAAAAAT
1 AATCGTAAATAAGAAAAAAAT
33437861 AATCG-AAA-AAGAAAAAAA
1 AATCGTAAATAAGAAAAAAA
33437879 CAGTAAGCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.69, C:0.05, G:0.10, T:0.15
Consensus pattern (21 bp):
AATCGTAAATAAGAAAAAAAT
Found at i:33438081 original size:23 final size:22
Alignment explanation
Indices: 33438053--33438097 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
33438043 AAATTAAATA
33438053 TCTAAGATTACAAAATCATATCT
1 TCTAAGATTAC-AAATCATATCT
*
33438076 TCTAAGATTACATATCATATCT
1 TCTAAGATTACAAATCATATCT
33438098 AAGATTGCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATCT
Found at i:33438100 original size:19 final size:19
Alignment explanation
Indices: 33438050--33438129 Score: 97
Period size: 19 Copynumber: 4.0 Consensus size: 19
33438040 TACAAATTAA
*
33438050 ATATCTAAGATTACAAAATC
1 ATATCTAAGATTAC-ATATC
33438070 ATATCTTCTAAGATTACATATC
1 ATA---TCTAAGATTACATATC
*
33438092 ATATCTAAGATTGCATATC
1 ATATCTAAGATTACATATC
*
33438111 ATATCTAAGATTGCATATC
1 ATATCTAAGATTACATATC
33438130 CTCGAAGATT
Statistics
Matches: 55, Mismatches: 2, Indels: 7
0.86 0.03 0.11
Matches are distributed among these distances:
19 34 0.62
20 3 0.05
22 7 0.13
23 11 0.20
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.36
Consensus pattern (19 bp):
ATATCTAAGATTACATATC
Found at i:33438711 original size:45 final size:43
Alignment explanation
Indices: 33438484--33439721 Score: 280
Period size: 44 Copynumber: 28.5 Consensus size: 43
33438474 TTAGTATGCC
* * * * * *
33438484 CCACTGCAATTTTAGGGGGATAAGACTTGCTTTCTTGAGTCTGCT
1 CCACTGCAACTTCAGGGAGATAAGACTTG-ATTATT-AGTCTCCT
* * * * *
33438529 CCACTGCAACTTCAGGAAGATAAGACTCGA-TGTGA-TCTACT
1 CCACTGCAACTTCAGGGAGATAAGACTTGATTATTAGTCTCCT
* * * *
33438570 CTACTGCAACTTCAGAGAGATAAGATCTGTGGTT-TTAATC-CGCT
1 CCACTGCAACTTCAGGGAGATAAGA-CT-TGATTATTAGTCTC-CT
* * * * **
33438614 CCACTGCAACTTCAGGGAGACAGGATTTGTTTATTTAGTAAGCC-
1 CCACTGCAACTTCAGGGAGATAAGACTTGATTA-TTAGT-CTCCT
33438658 CCACTGCAACTTCAGGGAGATAAGA-TTCGCCATCT-TTAGTCTTCCT
1 CCACTGCAACTTCAGGGAGATAAGACTT-G--AT-TATTAGTC-TCCT
* *
33438704 -CACTGCAACTTTA-GGAGGATAAGACTTGATTACTTAGTCTGCT
1 CCACTGCAACTTCAGGGA-GATAAGACTTGATTA-TTAGTCTCCT
* *** *
33438747 CCACTGCAACTTCAGGGAGATAAGACTAGA-TGCGA-TCTGCT
1 CCACTGCAACTTCAGGGAGATAAGACTTGATTATTAGTCTCCT
* * * * * *
33438788 -CTCTGCAACTTTAGAGAGATAAGATCTAAGGTT-TTAATC-CACT
1 CCACTGCAACTTCAGGGAGATAAGA-CT-TGATTATTAGTCTC-CT
* * * ** ** *
33438831 CCACTGCAACTTCAGGAAGATAGGATTATCGGCT-TTAACCTGCT
1 CCACTGCAACTTCAGGGAGATAAGACT-T-GATTATTAGTCTCCT
* * *
33438875 GCACTGCAACTTCAGGGAGATAAGATTTGCCATCT-TCAGTCTACCT
1 CCACTGCAACTTCAGGGAGATAAGACTTG--AT-TATTAGTCT-CCT
* *** *
33438921 -CACTGTAACTTCA-GGAGGATAAGACTTGA-TGCGA-TCTGCT
1 CCACTGCAACTTCAGGGA-GATAAGACTTGATTATTAGTCTCCT
* * ** * *
33438961 -CTCTGCAAC-TCCGGAGAGATAAGATCCAGGGTT-TTAATC-CACT
1 CCACTGCAACTTCAGG-GAGATAAGA--CTTGATTATTAGTCTC-CT
* * *
33439004 CCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTGCCT
1 CCACTGCAACTTCAGGGAGATAAGACTTGAT-TATT-AGTCT-CCT
* * *
33439050 -CACTGCAACTTCA-GGAGGATAAGACTTGCTTGCTTAGTCTGCT
1 CCACTGCAACTTCAGGGA-GATAAGACTTGATT-ATTAGTCTCCT
* * * *** *
33439093 CCATTACAACTTCAGGGAGATAAGACTAGA-TGCGA-TCTGCT
1 CCACTGCAACTTCAGGGAGATAAGACTTGATTATTAGTCTCCT
* * * *
33439134 -CTCTACAACTTCAGAGAGATAAGATCTGTGATT-TTAATC-CGCT
1 CCACTGCAACTTCAGGGAGATAAGA-CT-TGATTATTAGTCTC-CT
* * ** * *
33439177 CCACTGCAACTTCAGGGAGATAGGATTGTCGGCT-TTAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGACT-T-GATTATTAGTCTCCT
* * * * * *
33439221 CCACTACAACCTCAGGGAGATAAGATTTACCATCT-TCAGTCTGGCT
1 CCACTGCAACTTCAGGGAGATAAGACTT--GAT-TATTAGTCT-CCT
* * *
33439267 -CACTGCAACTTCA-AGAGGATAAGACTTGCTTACTTAGTCTGCT
1 CCACTGCAACTTCAGGGA-GATAAGACTTGATTA-TTAGTCTCCT
* *** *
33439310 CCACTGCAACTTCAGGGAGATAAGACTAGA-TGCGA-TCTGCT
1 CCACTGCAACTTCAGGGAGATAAGACTTGATTATTAGTCTCCT
* * ** * * *
33439351 -CTCTGCAACTTCAGAGAGATAAGATCCAAGGTT-TTAATC-CGT
1 CCACTGCAACTTCAGGGAGATAAGA--CTTGATTATTAGTCTCCT
* * * * ** * *
33439393 TCACTGCAACTTCAGCGAGATAGGATTATCGGCT-TTAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGACT-T-GATTATTAGTCTCCT
* * *
33439437 CCACTGCGACTTCAGGGAGATAAGATTTGCCATCT-TCAGTCTGCCT
1 CCACTGCAACTTCAGGGAGATAAGACTTG--AT-TATTAGTCT-CCT
* *
33439483 -CACTGCAACTTCA-GGAGGATAAGACTTGATGCA--A-TCTGCT
1 CCACTGCAACTTCAGGGA-GATAAGACTTGAT-TATTAGTCTCCT
* * * ** * *
33439523 -CTCTGCAACTTAAGAGAGATAAGATCCAAGGTT-TTAATC-CACT
1 CCACTGCAACTTCAGGGAGATAAGA--CTTGATTATTAGTCTC-CT
* * * * * * ** * *
33439566 CTACTACAAATTCAGGAAGATAGGATTGTCGGCT-TTAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGACT-T-GATTATTAGTCTCCT
* * * *
33439610 CCATTGCAACCTCAGGGAGATAAGATTTGCCATCT-TCAGTCTGCCT
1 CCACTGCAACTTCAGGGAGATAAGACTTG--AT-TATTAGTCT-CCT
* *
33439656 -CACTGCAACTTCA-GGAGGATAAGACTTGCTTACTTAGTCTGCT
1 CCACTGCAACTTCAGGGA-GATAAGACTTGATTA-TTAGTCTCCT
*
33439699 CCACTGCAACTTCAAGGAGATAA
1 CCACTGCAACTTCAGGGAGATAA
33439722 TACTAGATGC
Statistics
Matches: 892, Mismatches: 198, Indels: 207
0.69 0.15 0.16
Matches are distributed among these distances:
39 2 0.00
40 101 0.11
41 60 0.07
42 38 0.04
43 90 0.10
44 378 0.42
45 206 0.23
46 15 0.02
47 2 0.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (43 bp):
CCACTGCAACTTCAGGGAGATAAGACTTGATTATTAGTCTCCT
Found at i:33438825 original size:217 final size:219
Alignment explanation
Indices: 33438485--33438950 Score: 645
Period size: 217 Copynumber: 2.1 Consensus size: 219
33438475 TAGTATGCCC
* * * *
33438485 CACTGCAATTTTAGGGGGATAAGACTTGCTTTCTTGAGTCTGCTCCACTGCAACTTCAGGAAGAT
1 CACTGCAACTTTAGGAGGATAAGACTTGATTACTTGAGTCTGCTCCACTGCAACTTCAGGAAGAT
* * ** *
33438550 AAGACTCGATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCTC
66 AAGACTAGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTC
* ** * *
33438615 CACTGCAACTTCAGGGAGACAGGATT-T-GTTTATTTA-GTAAGCCCCACTGCAACTTCAGGGAG
131 CACTGCAACTTCAGGAAGACAGGATTATCGGCT-TTAACCT--GCCCCACTGCAACTTCAGGGAG
* *
33438677 ATAAGATTCGCCATCTTTAGTCTTCCT
193 ATAAGATTCGCCATCTTCAGTCTACCT
*
33438704 CACTGCAACTTTAGGAGGATAAGACTTGATTACTT-AGTCTGCTCCACTGCAACTTCAGGGAGAT
1 CACTGCAACTTTAGGAGGATAAGACTTGATTACTTGAGTCTGCTCCACTGCAACTTCAGGAAGAT
* *
33438768 AAGACTAGATGCGATCTGCTCT-CTGCAACTTTAGAGAGATAAGATCTAAGGTTTTAATCCACTC
66 AAGACTAGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTC
* **
33438832 CACTGCAACTTCAGGAAGATAGGATTATCGGCTTTAACCTGCTGCACTGCAACTTCAGGGAGATA
131 CACTGCAACTTCAGGAAGACAGGATTATCGGCTTTAACCTGCCCCACTGCAACTTCAGGGAGATA
*
33438897 AGATTTGCCATCTTCAGTCTACCT
196 AGATTCGCCATCTTCAGTCTACCT
* *
33438921 CACTGTAACTTCAGGAGGATAAGACTTGAT
1 CACTGCAACTTTAGGAGGATAAGACTTGAT
33438951 GCGATCTGCT
Statistics
Matches: 219, Mismatches: 25, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
217 134 0.61
218 51 0.23
219 34 0.16
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (219 bp):
CACTGCAACTTTAGGAGGATAAGACTTGATTACTTGAGTCTGCTCCACTGCAACTTCAGGAAGAT
AAGACTAGATGCGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTC
CACTGCAACTTCAGGAAGACAGGATTATCGGCTTTAACCTGCCCCACTGCAACTTCAGGGAGATA
AGATTCGCCATCTTCAGTCTACCT
Found at i:33438834 original size:84 final size:84
Alignment explanation
Indices: 33438745--33439198 Score: 366
Period size: 84 Copynumber: 5.3 Consensus size: 84
33438735 ACTTAGTCTG
*
33438745 CTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTTAGAGAGATAA
1 CTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAA
* *
33438810 GATCTAAGGTTTTAATCCA
66 GATCTATGATTTTAATCCA
* * * * *** * * *
33438829 CTCCACTGCAACTTCAGGAAGATAGGATTATCGGCTTTAACCTGCTGCACTGCAACTTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGACTA---GATGCGATCTGCT-CTCTGCAACTTCAGAGAG
* * *
33438894 ATAAGAT-T-TGCCATCTTCAGTCTA
62 ATAAGATCTATG--AT-TTTAATCCA
* * * *
33438918 C-CTCACTGTAACTTCA-GGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTCCGGAGAGAT
1 CTC-CACTGCAACTTCAGGGA-GATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGAT
* * *
33438981 AAGATCCAGGGTTTTAATCCA
64 AAGATCTATGATTTTAATCCA
* * * *
33439002 CTCCACTGCAACTTCAGGGAGATAAGATTTGCTAT-CTTCAGTCTGCCTCACTGCAACTTCAG-G
1 CTCCACTGCAACTTCAGGGAGATAAGACTAG--ATGC--GA-TCTG-CTCTCTGCAACTTCAGAG
* * **
33439065 AGGATAAGA-CT-TGCTTGCTTAGTCTG
60 A-GATAAGATCTATGATT--TTAATCCA
* * *
33439091 CTCCATTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAA
1 CTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAA
* *
33439156 GATCTGTGATTTTAATCCG
66 GATCTATGATTTTAATCCA
33439175 CTCCACTGCAACTTCAGGGAGATA
1 CTCCACTGCAACTTCAGGGAGATA
33439199 GGATTGTCGG
Statistics
Matches: 284, Mismatches: 60, Indels: 52
0.72 0.15 0.13
Matches are distributed among these distances:
84 105 0.37
85 35 0.12
86 16 0.06
87 16 0.06
88 34 0.12
89 78 0.27
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (84 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAA
GATCTATGATTTTAATCCA
Found at i:33438933 original size:173 final size:170
Alignment explanation
Indices: 33438658--33439292 Score: 696
Period size: 173 Copynumber: 3.7 Consensus size: 170
33438648 TTAGTAAGCC
* * * * *
33438658 CCACTGCAACTTCAGGGAGATAAGA-TTCGCCATCTTTAGTCTTCCTCACTGCAACTTTA-GGAG
1 CCACTGCAACTTCAGGGAGATAGGATTTCG---GCTTTAATC-TGCTCACTGCAACTTCAGGGA-
*
33438721 GATAAGACTTG--ATTACTT-AGTCTGCTCCACTGCAACTTCAGG-GAGATAAGACTAGATGCGA
61 GATAAGATTTGCCA-T-CTTCAGTCTGCT-CACTGCAACTTCAGGAG-GATAAGACTAGATGCGA
*
33438782 TCTGCTCTCTGCAACTTTAGAGAGATAAGATCTAAGGTTTTAATCCACT
122 TCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACT
* *
33438831 CCACTGCAACTTCAGGAAGATAGGATTATCGGCTTTAACCTGCTGCACTGCAACTTCAGGGAGAT
1 CCACTGCAACTTCAGGGAGATAGGATT-TCGGCTTTAATCTGCT-CACTGCAACTTCAGGGAGAT
* * *
33438896 AAGATTTGCCATCTTCAGTCTACCTCACTGTAACTTCAGGAGGATAAGACTTGATGCGATCTGCT
64 AAGATTTGCCATCTTCAGTCT-GCTCACTGCAACTTCAGGAGGATAAGACTAGATGCGATCTGCT
* * * *
33438961 CTCTGCAACTCCGGAGAGATAAGATCCAGGGTTTTAATCCACT
128 CTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACT
* ** * *
33439004 CCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTGCCTCACTGCAACTTCA-GGAGG
1 CCACTGCAACTTCAGGGAGATAGGATTT-C-GGCTTTAATCTG-CTCACTGCAACTTCAGGGA-G
* * * *
33439068 ATAAGACTTG-CTTGCTT-AGTCTGCTCCATTACAACTTCAGG-GAGATAAGACTAGATGCGATC
62 ATAAGATTTGCCAT-CTTCAGTCTGCT-CACTGCAACTTCAGGAG-GATAAGACTAGATGCGATC
* ** * *
33439130 TGCTCTCTACAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCT
124 TGCTCTCTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACT
* *
33439177 CCACTGCAACTTCAGGGAGATAGGATTGTCGGCTTTAATCTGCTCCACTACAACCTCAGGGAGAT
1 CCACTGCAACTTCAGGGAGATAGGATT-TCGGCTTTAATCTGCT-CACTGCAACTTCAGGGAGAT
* *
33439242 AAGATTTACCATCTTCAGTCTGGCTCACTGCAACTTCAAGAGGATAAGACT
64 AAGATTTGCCATCTTCAGTCT-GCTCACTGCAACTTCAGGAGGATAAGACT
33439293 TGCTTACTTA
Statistics
Matches: 388, Mismatches: 51, Indels: 46
0.80 0.11 0.09
Matches are distributed among these distances:
171 5 0.01
172 66 0.17
173 269 0.69
174 43 0.11
175 5 0.01
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (170 bp):
CCACTGCAACTTCAGGGAGATAGGATTTCGGCTTTAATCTGCTCACTGCAACTTCAGGGAGATAA
GATTTGCCATCTTCAGTCTGCTCACTGCAACTTCAGGAGGATAAGACTAGATGCGATCTGCTCTC
TGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACT
Found at i:33439013 original size:217 final size:217
Alignment explanation
Indices: 33438485--33439029 Score: 577
Period size: 217 Copynumber: 2.5 Consensus size: 217
33438475 TAGTATGCCC
* * * * * *
33438485 CACTGCAATTTTAGGGGGATAAGACTTGCTTTCTTGAGTCTGCTCCACTGCAACTTCAGGAAGAT
1 CACTGCAACTTCAGGAGGATAAGACTTGATTAC-TGAGTCTGCTCCACTGCAACTTCAGGGAGAT
** * * ** *
33438550 AAGACTC-GATGTGATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCGCT
65 AAGAC-CAGATGCAATCCACTCCACTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACT
* ** * *
33438614 CCACTGCAACTTCAGGGAGACAGGATTTGTTTATTTAGTAAGCCCCACTGCAACTTCAGGGAGAT
129 CCACTGCAACTTCAGGAAGACAGGATTTGGCTATTAACT-AGCCCCACTGCAACTTCAGGGAGAT
* *
33438679 AAGATTCGCCATCTTTAGTCTTCCT
193 AAGATTCGCCATCTTCAGTCTACCT
* *
33438704 CACTGCAACTTTAGGAGGATAAGACTTGATTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATA
1 CACTGCAACTTCAGGAGGATAAGACTTGATTACTGAGTCTGCTCCACTGCAACTTCAGGGAGATA
* * ** * *
33438769 AGACTAGATGCGATCTGCT-CTCTGCAACTTTAGAGAGATAAGATCTAAGGTTTTAATCCACTCC
66 AGACCAGATGCAATCCACTCCACTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTCC
* **
33438833 ACTGCAACTTCAGGAAGATAGGATTATCGGCT-TTAACCT-GCTGCACTGCAACTTCAGGGAGAT
131 ACTGCAACTTCAGGAAGACAGGATT-T-GGCTATTAA-CTAGCCCCACTGCAACTTCAGGGAGAT
*
33438896 AAGATTTGCCATCTTCAGTCTACCT
193 AAGATTCGCCATCTTCAGTCTACCT
* * * *
33438921 CACTGTAACTTCAGGAGGATAAGACTTGA-TGC-GA-TCTGCT-CTCTGCAAC-TCCGGAGAGAT
1 CACTGCAACTTCAGGAGGATAAGACTTGATTACTGAGTCTGCTCCACTGCAACTTCAGG-GAGAT
* ** *
33438981 AAGATCCAGGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAAGAT
65 AAGA-CCA--GATGCAATCCACTCCACTGCAACTTCAGAGAGATAAGAT
33439030 TTGCTATCTT
Statistics
Matches: 275, Mismatches: 42, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
212 4 0.01
213 17 0.06
214 8 0.03
215 1 0.00
216 9 0.03
217 155 0.56
218 49 0.18
219 32 0.12
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (217 bp):
CACTGCAACTTCAGGAGGATAAGACTTGATTACTGAGTCTGCTCCACTGCAACTTCAGGGAGATA
AGACCAGATGCAATCCACTCCACTGCAACTTCAGAGAGATAAGATCTAAGGTTTTAATCCACTCC
ACTGCAACTTCAGGAAGACAGGATTTGGCTATTAACTAGCCCCACTGCAACTTCAGGGAGATAAG
ATTCGCCATCTTCAGTCTACCT
Found at i:33439143 original size:129 final size:129
Alignment explanation
Indices: 33438876--33439246 Score: 323
Period size: 129 Copynumber: 2.9 Consensus size: 129
33438866 TAACCTGCTG
* * * *
33438876 CACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTACCTCACTGTAACTTCAGGAGGAT
1 CACTACAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGAT
* * * * * **
33438941 AAGACTTGATGC-GATCTGCT-C-TCTGCAACTCCGGAGAGATAAGATCCAGGGTTTTAATCCAC
66 AAGACTTGTTGCTTATCTGCTCCAT-TACAACTCAGG-GAGATAAGATCCA-GGATGCAATCCAC
33439003 TC
128 TC
*
33439005 CACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGAT
1 CACTACAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGAT
* * **
33439070 AAGACTTGCTTGCTTAGTCTGCTCCATTACAACTTCAGGGAGATAAGA-CTA-GATGCGATCTGC
66 AAGACTTG-TTGCTTA-TCTGCTCCATTACAAC-TCAGGGAGATAAGATCCAGGATGCAATCCAC
33439133 T-
128 TC
* * * * * *
33439134 CTCTACAACTTCAGAGAGATAAGATCTG-TGAT-TTTAATCCG-CTCCACTGCAACTTCAGG-GA
1 CACTACAACTTCAGGGAGATAAGATTTGCT-ATCTTCAGTCTGCCT-CACTGCAACTTCAGGAG-
* * *
33439195 GATAGGA-TTGTCGGCTTTAATCTGCTCCACTACAACCTCAGGGAGATAAGAT
63 GATAAGACTTGT-TGC-TT-ATCTGCTCCATTACAA-CTCAGGGAGATAAGAT
33439247 TTACCATCTT
Statistics
Matches: 204, Mismatches: 24, Indels: 28
0.80 0.09 0.11
Matches are distributed among these distances:
126 1 0.00
127 8 0.04
128 58 0.28
129 98 0.48
130 10 0.05
131 1 0.00
132 8 0.04
133 15 0.07
134 5 0.02
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (129 bp):
CACTACAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGAT
AAGACTTGTTGCTTATCTGCTCCATTACAACTCAGGGAGATAAGATCCAGGATGCAATCCACTC
Found at i:33439171 original size:346 final size:346
Alignment explanation
Indices: 33438658--33439294 Score: 1040
Period size: 346 Copynumber: 1.8 Consensus size: 346
33438648 TTAGTAAGCC
* * *
33438658 CCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTTAGTCTTCCTCACTGCAACTTTAGGAGGA
1 CCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGA
*
33438723 TAAGACTTGATTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCT
66 TAAGACTTGATTACTTAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCT
* * *
33438788 CTCTGCAACTTTAGAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATA
131 CTCTACAACTTCAGAGAGATAAGATCTAAGATTTTAATCCACTCCACTGCAACTTCAGGAAGATA
* * * *
33438853 GGATTATCGGCTTTAACCTGCTGCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTA
196 GGATTATCGGCTTTAACCTGCTCCACTACAACCTCAGGGAGATAAGATTTACCATCTTCAGTCTA
* *
33438918 CCTCACTGTAACTTCAGGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTCCGGAGAGATAA
261 CCTCACTGCAACTTCAAGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTCCGGAGAGATAA
33438983 GATCCAGGGTTTTAATCCACT
326 GATCCAGGGTTTTAATCCACT
* *
33439004 CCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGA
1 CCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGA
* * *
33439069 TAAGACTTGCTTGCTTAGTCTGCTCCATTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCT
66 TAAGACTTGATTACTTAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCT
** * *
33439134 CTCTACAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATA
131 CTCTACAACTTCAGAGAGATAAGATCTAAGATTTTAATCCACTCCACTGCAACTTCAGGAAGATA
* * *
33439199 GGATTGTCGGCTTTAATCTGCTCCACTACAACCTCAGGGAGATAAGATTTACCATCTTCAGTCTG
196 GGATTATCGGCTTTAACCTGCTCCACTACAACCTCAGGGAGATAAGATTTACCATCTTCAGTCTA
*
33439264 GCTCACTGCAACTTCAAGAGGATAAGACTTG
261 CCTCACTGCAACTTCAAGAGGATAAGACTTG
33439295 CTTACTTAGT
Statistics
Matches: 265, Mismatches: 26, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
346 265 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (346 bp):
CCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGA
TAAGACTTGATTACTTAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCT
CTCTACAACTTCAGAGAGATAAGATCTAAGATTTTAATCCACTCCACTGCAACTTCAGGAAGATA
GGATTATCGGCTTTAACCTGCTCCACTACAACCTCAGGGAGATAAGATTTACCATCTTCAGTCTA
CCTCACTGCAACTTCAAGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTCCGGAGAGATAA
GATCCAGGGTTTTAATCCACT
Found at i:33439359 original size:346 final size:345
Alignment explanation
Indices: 33438658--33439375 Score: 994
Period size: 346 Copynumber: 2.1 Consensus size: 345
33438648 TTAGTAAGCC
* * *
33438658 CCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTTAGTCTTCCTCACTGCAACTTTAGGAGGA
1 CCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGA
*
33438723 TAAGACTTGATTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCT
66 TAAGACTTGATTACTTAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCT
* * *
33438788 CTCTGCAACTTTAGAGAGATAAGATCTAAGGTTTTAATCCACTCCACTGCAACTTCAGGAAGATA
131 CTCTACAACTTCAGAGAGATAAGATCTAAGATTTTAATCCACTCCACTGCAACTTCAGGAAGATA
* * * *
33438853 GGATTATCGGCTTTAACCTGCTGCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTA
196 GGATTATCGGCTTTAACCTGCTCCACTACAACCTCAGGGAGATAAGATTTACCATCTTCAGTCTA
* * * * *
33438918 CCTCACTGTAACTTCAGGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTCCGGAGAGATAA
261 CCTCACTGCAACTTCAAGAGGATAAGACTTGATACGATCTGCTCACTGCAACTCAGGAGAGATAA
* **
33438983 GATCCAGGGTTTTAATCCACT
326 GATCCA-GGATGCAATCCACT
* *
33439004 CCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGA
1 CCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGA
* * *
33439069 TAAGACTTGCTTGCTTAGTCTGCTCCATTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCT
66 TAAGACTTGATTACTTAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCT
** * *
33439134 CTCTACAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATA
131 CTCTACAACTTCAGAGAGATAAGATCTAAGATTTTAATCCACTCCACTGCAACTTCAGGAAGATA
* * *
33439199 GGATTGTCGGCTTTAATCTGCTCCACTACAACCTCAGGGAGATAAGATTTACCATCTTCAGTCTG
196 GGATTATCGGCTTTAACCTGCTCCACTACAACCTCAGGGAGATAAGATTTACCATCTTCAGTCTA
* * *
33439264 GCTCACTGCAACTTCAAGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGG-GA
261 CCTCACTGCAACTTCAAGAGGATAAGACTTG-ATAC-GA-TCTGCT-CACTGCAAC-TCAGGAGA
* * **
33439328 GATAAGA-CTA-GATGCGATCTGCT
321 GATAAGATCCAGGATGCAATCCACT
* *
33439351 -CTCTGCAACTTCAGAGAGATAAGAT
1 CCACTGCAACTTCAGGGAGATAAGAT
33439376 CCAAGGTTTT
Statistics
Matches: 327, Mismatches: 40, Indels: 10
0.87 0.11 0.03
Matches are distributed among these distances:
346 288 0.88
347 9 0.03
348 1 0.00
349 8 0.02
350 17 0.05
351 4 0.01
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (345 bp):
CCACTGCAACTTCAGGGAGATAAGATTCGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGA
TAAGACTTGATTACTTAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAGATGCGATCTGCT
CTCTACAACTTCAGAGAGATAAGATCTAAGATTTTAATCCACTCCACTGCAACTTCAGGAAGATA
GGATTATCGGCTTTAACCTGCTCCACTACAACCTCAGGGAGATAAGATTTACCATCTTCAGTCTA
CCTCACTGCAACTTCAAGAGGATAAGACTTGATACGATCTGCTCACTGCAACTCAGGAGAGATAA
GATCCAGGATGCAATCCACT
Found at i:33439505 original size:216 final size:217
Alignment explanation
Indices: 33438993--33439510 Score: 849
Period size: 217 Copynumber: 2.4 Consensus size: 217
33438983 GATCCAGGGT
** *
33438993 TTTAATCCACTCCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTCAGTCTGCCTCACTGCAA
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAA
* *
33439058 CTTCAGGAGGATAAGACTTGCTTGCTTAGTCTGCTCCATTACAACTTCAGGGAGATAAGACTAGA
66 CTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAGA
***
33439123 TGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCCACTGCAACT
131 TGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCCAAGATTTTAATCCGCTCCACTGCAACT
* *
33439188 TCAGGGAGATAGGATTGTCGGC
196 TCAGCGAGATAGGATTATCGGC
* * * *
33439210 TTTAATCTGCTCCACTACAACCTCAGGGAGATAAGATTTACCATCTTCAGTCTGGCTCACTGCAA
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAA
* *
33439275 CTTCAAGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGA
66 CTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAGA
* * *
33439340 TGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCG-TTCACTGCAACT
131 TGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCCAAGATTTTAATCCGCTCCACTGCAACT
33439404 TCAGCGAGATAGGATTATCGGC
196 TCAGCGAGATAGGATTATCGGC
*
33439426 TTTAATCTGCTCCACTGCGACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAA
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAA
33439491 CTTCAGGAGGATAAGACTTG
66 CTTCAGGAGGATAAGACTTG
33439511 ATGCAATCTG
Statistics
Matches: 276, Mismatches: 25, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
216 110 0.40
217 166 0.60
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (217 bp):
TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAA
CTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTAGA
TGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCCAAGATTTTAATCCGCTCCACTGCAACT
TCAGCGAGATAGGATTATCGGC
Found at i:33439661 original size:173 final size:172
Alignment explanation
Indices: 33439302--33439683 Score: 608
Period size: 173 Copynumber: 2.2 Consensus size: 172
33439292 TTGCTTACTT
* * *
33439302 AGTCTG-CTCCACTGCAACTTCAGG-GAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAG
1 AGTCTGCCT-CACTGCAACTTCAGGAG-GATAAGACTTGATGCAATCTGCTCTCTGCAACTTAAG
** * *
33439365 AGAGATAAGATCCAAGGTTTTAATCCGTTCACTGCAACTTCAGCGAGATAGGATTATCGGCTTTA
64 AGAGATAAGATCCAAGGTTTTAATCCACTCACTACAAATTCAGCGAGATAGGATTATCGGCTTTA
* *
33439430 ATCTGCTCCACTGCGACTTCAGGGAGATAAGATTTGCCATCTTC
129 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTC
33439474 AGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGATGCAATCTGCTCTCTGCAACTTAAGAG
1 AGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGATGCAATCTGCTCTCTGCAACTTAAGAG
*
33439539 AGATAAGATCCAAGGTTTTAATCCACTCTACTACAAATTCAG-GAAGATAGGATTGTCGGCTTTA
66 AGATAAGATCCAAGGTTTTAATCCACTC-ACTACAAATTCAGCG-AGATAGGATTATCGGCTTTA
*
33439603 ATCTGCTCCATTGCAACCTCAGGGAGATAAGATTTGCCATCTTC
129 ATCTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTC
33439647 AGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTG
1 AGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTG
33439684 CTTACTTAGT
Statistics
Matches: 195, Mismatches: 11, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
172 84 0.43
173 111 0.57
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (172 bp):
AGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGATGCAATCTGCTCTCTGCAACTTAAGAG
AGATAAGATCCAAGGTTTTAATCCACTCACTACAAATTCAGCGAGATAGGATTATCGGCTTTAAT
CTGCTCCACTGCAACCTCAGGGAGATAAGATTTGCCATCTTC
Found at i:33439778 original size:173 final size:173
Alignment explanation
Indices: 33439267--33439811 Score: 434
Period size: 173 Copynumber: 3.2 Consensus size: 173
33439257 CAGTCTGGCT
* * *
33439267 CACTGCAACTTCA-AGAGGATAAGACTTG-CTTACTT-AGTCTG-CTCCACTGCAACTTCAGG-G
1 CACTGCAACTTCAGGGA-GATAAGATTTGCCAT-CTTCAGTCTGCCT-CACTGCAACTTCAGGAG
* * * * * * * ** *
33439327 AGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCG
63 -GATAAGACTTGATACAATCTGCTCACTGCAACTTAAGAGAGATAAGATACAAGGATGCAATCCA
* ** * * * * *
33439392 TTC-ACTGCAACTTC-AGCGAGATAGGAT-TATCGGCTTTAATCTGCTC
127 CTCTACCACAAATTCAAG-AAGATAAGATCCA-AGGCTTTAATCTGCTC
*
33439438 CACTGCGACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGAT
1 CACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGAT
* * * * **
33439503 AAGACTTGATGCAATCTGCTCTCTGCAACTTAAGAGAGATAAGATCCAAGGTTTTAATCCACTCT
66 AAGACTTGATACAATCTGCTCACTGCAACTTAAGAGAGATAAGATACAAGGATGCAATCCACTCT
* * * ****
33439568 ACTACAAATTCAGGAAGATAGGATTGTCGGCTTTAATCTGCTC
131 ACCACAAATTCAAGAAGATAAGATCCAAGGCTTTAATCTGCTC
* *
33439611 CATTGCAACCTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGAT
1 CACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGAT
* * * * *
33439676 AAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAAG-GAGAT-A-ATACTA-GATGCGATCT
66 AAGACTTG-ATAC--AATCTGCT-CACTGCAACTT-AAGAGAGATAAGATACAAGGATGCAATCC
* * ** * *
33439737 GCTCT-CCATATCTTCAA-AGAGATAAGATCCAAGGTTTTAATCCGCTC
126 ACTCTACCACAAATTCAAGA-AGATAAGATCCAAGGCTTTAATCTGCTC
* *
33439784 CACTGCAACTTCAGGGAGACAAGGTTTG
1 CACTGCAACTTCAGGGAGATAAGATTTG
33439812 GTGGCTTAAA
Statistics
Matches: 314, Mismatches: 46, Indels: 26
0.81 0.12 0.07
Matches are distributed among these distances:
171 25 0.08
172 88 0.28
173 159 0.51
174 12 0.04
175 4 0.01
176 8 0.03
177 15 0.05
178 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (173 bp):
CACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGAT
AAGACTTGATACAATCTGCTCACTGCAACTTAAGAGAGATAAGATACAAGGATGCAATCCACTCT
ACCACAAATTCAAGAAGATAAGATCCAAGGCTTTAATCTGCTC
Found at i:33439895 original size:389 final size:385
Alignment explanation
Indices: 33438921--33439863 Score: 1127
Period size: 389 Copynumber: 2.4 Consensus size: 385
33438911 CAGTCTACCT
* * * **
33438921 CACTGTAACTTC-AGGAGGATAAGACTTGATGCGATCTGCTCTCTGCAACTCCGGAGAGATAAGA
1 CACTGCAACTTCAAGGA-GATAAGACTAGATGCGATCTGCTCTC-GCAACTTCAAAGAGATAAGA
* * * ** * * *
33438985 TCCAGGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAA-GATT-TGCTATCTTCAGTCTGC
64 TCCAAGGTTTTAATCC-GTCCACTGCAACTTCAGCGAGA-AAGGATTAT-C-GGCTTAAATCTAC
* * * *
33439048 -CTCACTGCAACTTCAGGAGGATAAGACTTG-CTTGCTT-AGTCTG-CTCCATTACAACTTCAGG
125 TC-CACTG--ACTT-AGGAAGATAAGATTTGCCAT-CTTCAGTCTGCCT-CACTACAACTTCAGG
* * ***
33439109 GAGATAAGACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCTGTGATTTTAATCC
184 GAGATAAGACTAGATGCAATCTGCTCTCTACAACTTAAGAGAGATAAGATCCAAGATTTTAATCC
* * * *
33439174 GCTCCACTGCAACTTCAGGGAGATAGGATTGTCGGCTTTAATCTGCTCCACTACAACCTCAGGGA
249 ACTCCACTACAAATTCAGGAAGATAGGATTGTCGGCTTTAATCTGCTCCACTACAACCTCAGGGA
*
33439239 GATAAGATTTACCATCTTCAGTCTGGCTCACTGCAACTTCAAGAGGATAAGACTTGCTTACTTAG
314 GATAAGATTTACCATCTTCAGTCTGCCTCACTGCAACTTCAAGAGGATAAGACTTGCTTACTTAG
33439304 TCTGCTC
379 TCTGCTC
* *
33439311 CACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGAT
1 CACTGCAACTTCAAGGAGATAAGACTAGATGCGATCTGCTCTC-GCAACTTCAAAGAGATAAGAT
* * * *
33439376 CCAAGGTTTTAATCCGTTCACTGCAACTTCAGCGAGATAGGATTATCGGCTTTAATCTGCTCCAC
65 CCAAGGTTTTAATCCGTCCACTGCAACTTCAGCGAGAAAGGATTATCGGCTTAAATCTACTCCAC
* *
33439441 TGCGACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCA-GGAGGATAA
130 T--GACTT-AGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTACAACTTCAGGGA-GATAA
* * * *
33439505 GACTTGATGCAATCTGCTCTCTGCAACTTAAGAGAGATAAGATCCAAGGTTTTAATCCACTCTAC
191 GACTAGATGCAATCTGCTCTCTACAACTTAAGAGAGATAAGATCCAAGATTTTAATCCACTCCAC
* *
33439570 TACAAATTCAGGAAGATAGGATTGTCGGCTTTAATCTGCTCCATTGCAACCTCAGGGAGATAAGA
256 TACAAATTCAGGAAGATAGGATTGTCGGCTTTAATCTGCTCCACTACAACCTCAGGGAGATAAGA
* *
33439635 TTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTC
321 TTTACCATCTTCAGTCTGCCTCACTGCAACTTCAAGAGGATAAGACTTGCTTACTTAGTCTGCTC
*
33439700 CACTGCAACTTCAAGGAGATAATACTAGATGCGATCTGCTCTC-CATATCTTCAAAGAGATAAGA
1 CACTGCAACTTCAAGGAGATAAGACTAGATGCGATCTGCTCTCGCA-A-CTTCAAAGAGATAAGA
* * *
33439764 TCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGACAAGGTTTGGT-GGCTTAAATCTACT
64 TCCAAGGTTTTAATCCG-TCCACTGCAACTTCAGCGAGA-AAGGATT-ATCGGCTTAAATCTAC-
* *
33439828 TCCCACT-ATCTT-GGAAAGATATGATTTGCCGTCTTC
125 T-CCACTGA-CTTAGG-AAGATAAGATTTGCCATCTTC
33439864 GATCTGATCC
Statistics
Matches: 483, Mismatches: 51, Indels: 38
0.84 0.09 0.07
Matches are distributed among these distances:
387 2 0.00
388 39 0.08
389 301 0.62
390 112 0.23
391 22 0.05
392 2 0.00
393 5 0.01
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (385 bp):
CACTGCAACTTCAAGGAGATAAGACTAGATGCGATCTGCTCTCGCAACTTCAAAGAGATAAGATC
CAAGGTTTTAATCCGTCCACTGCAACTTCAGCGAGAAAGGATTATCGGCTTAAATCTACTCCACT
GACTTAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTACAACTTCAGGGAGATAAGACTA
GATGCAATCTGCTCTCTACAACTTAAGAGAGATAAGATCCAAGATTTTAATCCACTCCACTACAA
ATTCAGGAAGATAGGATTGTCGGCTTTAATCTGCTCCACTACAACCTCAGGGAGATAAGATTTAC
CATCTTCAGTCTGCCTCACTGCAACTTCAAGAGGATAAGACTTGCTTACTTAGTCTGCTC
Found at i:33439945 original size:132 final size:130
Alignment explanation
Indices: 33439794--33440206 Score: 630
Period size: 132 Copynumber: 3.1 Consensus size: 130
33439784 CACTGCAACT
* * *
33439794 TCAGGGAGACAAGGTTTGGTGGCTTAAATCTACTTCCCACTATCTTGGAAAGATATGATTTGCCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCG
33439859 TCTTCGATCTGATCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTTCGCTGCT
66 TCTTCGATCT-ATCCACTACTGCTTAGGGAGATAAGATCTACAATCTT-AACCTACTTCGCTGCT
33439924 GC
129 GC
* *
33439926 TTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCG
* * *
33439991 TCTTCAATCTTCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTTAACCTACTCCGCTGCT
66 TCTTCGATC-TATCCACTACTGCTTAGGGAGATAAGATCTACAATC-TTAACCTACTTCGCTGCT
33440056 GC
129 GC
* * *
33440058 TCAGGGAGACAAGGCTTGGTGGGTTAAATATGCTTCCCAGTATCTTGGAAAGATAAGATTTGCCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCG
* * *
33440123 TCCTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTACGATTCTTAACCTAC-TCTGCTGT
66 TCTTCGATCTA-TCCACTACTGCTTAGGGAGATAAGATCTAC-AATCTTAACCTACTTC-GCTGC
33440187 TGC
128 TGC
33440190 TCAGGGAGACAAGGCTT
1 TCAGGGAGACAAGGCTT
33440207 AGTGTTTCAC
Statistics
Matches: 257, Mismatches: 19, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
131 2 0.01
132 249 0.97
133 6 0.02
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.31
Consensus pattern (130 bp):
TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGCCG
TCTTCGATCTATCCACTACTGCTTAGGGAGATAAGATCTACAATCTTAACCTACTTCGCTGCTGC
Found at i:33440024 original size:44 final size:44
Alignment explanation
Indices: 33439844--33440028 Score: 119
Period size: 44 Copynumber: 4.2 Consensus size: 44
33439834 TATCTTGGAA
* * * *
33439844 AGATATGATTTGCCGTCTTCGATCTGATCCACTACTGCTTAGGG
1 AGATAAGATTTGTCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * * * *
33439888 AGATAAGATCT-ACAATCTTCAACCTACTTCGCTGCTGCTTAGGG
1 AGATAAGATTTGTC-GTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * *
33439932 AGACAAGGCTTGGT-GGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTTGTCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
*
33439976 AGATAAGATTTGTCGTCTTCAATCTTCTCCACTACTGCTTAGGG
1 AGATAAGATTTGTCGTCTTCAATCTGCTCCACTACTGCTTAGGG
33440020 AGATAAGAT
1 AGATAAGAT
33440029 CTACAATCTT
Statistics
Matches: 99, Mismatches: 32, Indels: 20
0.66 0.21 0.13
Matches are distributed among these distances:
42 6 0.06
43 10 0.10
44 74 0.75
45 6 0.06
46 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (44 bp):
AGATAAGATTTGTCGTCTTCAATCTGCTCCACTACTGCTTAGGG
Found at i:33441505 original size:16 final size:15
Alignment explanation
Indices: 33441466--33441512 Score: 51
Period size: 16 Copynumber: 3.1 Consensus size: 15
33441456 TCTATTTTCC
33441466 TTTTCTTTTTCTTTT
1 TTTTCTTTTTCTTTT
**
33441481 TATCACTTTTTCTTCTT
1 T-TTTCTTTTTCTT-TT
33441498 TTTTCTTTTT-TTTT
1 TTTTCTTTTTCTTTT
33441512 T
1 T
33441513 ATATTTTGAT
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
14 3 0.12
15 3 0.12
16 17 0.65
17 3 0.12
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (15 bp):
TTTTCTTTTTCTTTT
Found at i:33445636 original size:23 final size:22
Alignment explanation
Indices: 33445610--33445659 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 22
33445600 TAAGAAATTG
33445610 TATCTTCTAAGATTACAAAATCA
1 TATCTTCTAAGATTAC-AAATCA
*
33445633 TATCTTCTAAGATTACATATCA
1 TATCTTCTAAGATTACAAATCA
33445655 TATCT
1 TATCT
33445660 AAGATTGCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 10 0.38
23 16 0.62
ACGTcount: A:0.38, C:0.18, G:0.04, T:0.40
Consensus pattern (22 bp):
TATCTTCTAAGATTACAAATCA
Found at i:33445662 original size:19 final size:19
Alignment explanation
Indices: 33445615--33445712 Score: 106
Period size: 19 Copynumber: 4.8 Consensus size: 19
33445605 AATTGTATCT
*
33445615 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
33445635 TCTTCTAAGATTACATATCATA
1 ---TCTAAGATTACATATCATA
*
33445657 TCTAAGATTGCATATATCATA
1 TCTAAGATT--ACATATCATA
*
33445678 TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATA
*
33445697 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
33445713 CTCGAAGATT
Statistics
Matches: 69, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
19 33 0.48
21 18 0.26
22 7 0.10
23 11 0.16
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:33445675 original size:21 final size:21
Alignment explanation
Indices: 33445649--33445711 Score: 112
Period size: 21 Copynumber: 3.1 Consensus size: 21
33445639 CTAAGATTAC
33445649 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
33445670 ATATCATATCTAAGATTGC--
1 ATATCATATCTAAGATTGCAT
33445689 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
33445710 AT
1 AT
33445712 CCTCGAAGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
19 19 0.47
21 21 0.52
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (21 bp):
ATATCATATCTAAGATTGCAT
Done.