Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 120 of 189
Found at i:33713793 original size:142 final size:141
Alignment explanation
Indices: 33713069--33720770 Score: 3804
Period size: 143 Copynumber: 54.7 Consensus size: 141
33713059 AGTGACCATC
* *
33713069 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTG-TGCATAGCGAAA-TTCTCGTG
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGC-AAACTTCTTGTG
* * * *
33713132 TCTTATGATTTTTTTAATTT-ATTTTTAAATATTGAAACTCGAATTT-TGAGGCAAAC-TCCGTT
65 TTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCT-AGGC-AACTTCGGTT
* *
33713194 ACGGAATTAAAGATA
127 ACAGAATCAAAGATA
* * *
33713209 AAGTATAAATTTTTAAGTGGTTAAAATGGAAATTTACCTTGT-ATTGCATAGAAAACTTCTAT-T
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGA-TGCATAGCAAACTTCT-TGT
* * *
33713272 GTTTTATGAATTTTTATAATTTCATTTTTAAATATAAAAATTCAAATTTCAAGGCAA-TGTCGGT
64 GTTTTATG-ATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCTAGGCAACT-TCGGT
* *
33713336 TGCAGAATCAAATATA
126 TACAGAATCAAAGATA
33713352 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATATTACATAGCAAACTT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATG-------CATAGCAAACTT
* * * **
33713417 CTTGTGATTTATGATTTTTTTAATTTCATTTTTAAATGTTAAAATTCGATTTTCTAGGCAAAGTC
59 CTTGTGTTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCTAGGCAACTTC
*
33713482 GGTTACAAAAT-AAAGATA
123 GGTTACAGAATCAAAGATA
** * ** * * * * *
33713500 CTGTATAATTTTTTAAGAGACTAAGATGGAAATTTACAATGTGATGCATAGCGAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * * * * *
33713565 CTTATGAATCTTTTTAATTACATTTTAAAATATTAAAACTCGAATTT-TGAGTTG-AA-GTCCGT
66 TTTATG-ATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCT-AG--GCAACTTCGGT
* * *
33713627 TACGGAATTATAGATA
126 TACAGAATCAAAGATA
* * ** *
33713643 AAGTATAAACTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTAATTGTAT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * *
33713708 TTTGTGCTTTTTTTAATTTTATTTTTAAATATTAAAATTCAAGTTTCTAGACAACTTCGGTTACA
66 TTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTCAA-TTTCTAGGCAACTTCGGTTACA
* *
33713773 AAATCAAAGTTA
130 GAATCAAAGATA
* * * * *
33713785 AAGTATAAATTTATAAGAGGTTAGAAA-GGAAGTTTACCATGTGATGCATAGCGAAGTTCTCGTG
1 AAGTATAAATTTTTAAGAGGTTA-AAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTG
* * * * * * **
33713849 TCTTATGAGTATTTTTAATTTCATTTTTAAATATTGAAACTCAAATTT-T-GAGAAAATGTTTGT
65 TTTTATGA-TTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCTAG-GCAACT-TCGGT
** * *
33713912 TATGGAATTATAGATA
126 TACAGAATCAAAGATA
* * ** *
33713928 AAGTATATATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTAATTGTAT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * * *
33713993 TTTGTGCTTTTTTTAATTTTATTTTTAAATATTAAAATTCAAGTTTCGAGACAACTTCGGTTACA
66 TTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTCAA-TTTCTAGGCAACTTCGGTTACA
* *
33714058 AAATCAAAGTTA
130 GAATCAAAGATA
* * * * * *
33714070 AAGTATAAATTTATAAGAGGTTAAAAAGGAAGTTTACCATGTGATGCATAGCGAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * * * * **
33714135 CTTATGAGTATTTTTAATTTCATTTTTAAATATTGAAACTCAAATTT-T-GAGAAAATGTTTGTT
66 TTTATGA-TTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCTAG-GCAACT-TCGGTT
*
33714198 ACGGAAT-AATAGATA
127 ACAGAATCAA-AGATA
* * ** *
33714213 AAGTATATATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTAATTGTAT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * * *
33714278 TTTGTGCTTTTTTTAATTTTATTTTTAAATATTAAAATTCAAGTTTCGAGACAACTTCGGTTACA
66 TTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTCAA-TTTCTAGGCAACTTCGGTTACA
* *
33714343 AAATCAAAGTTA
130 GAATCAAAGATA
* * * * * *
33714355 AAGTATAAATTTATAAGAGGTTAAAAAGGAAGTTTACCATGTGATGCATAGCGAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * * * * **
33714420 CTTATGAGTATTTTTAATTTCATTTTTAAATATTGAAACTCAAATTT-T-GAGAAAATGTTTGTT
66 TTTATGA-TTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCTAG-GCAACT-TCGGTT
* * *
33714483 ACGGAATTATAGATA
127 ACAGAATCAAAGATA
* * *
33714498 AAGTATATATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTTATGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * *
33714563 TTTATGCTTCTGTTTTTTAATTTTATTTTTAAATATTAAAATTTGC-ATTT-TAAGTCAACGTCG
66 TTTATG---AT-TTTTTTAATTTCATTTTTAAATATTAAAA-TT-CAATTTCT-AGGCAACTTCG
*
33714626 ATTACAGAATCAAAGATA
124 GTTACAGAATCAAAGATA
* * * * *
33714644 AAGTATAAATTTTAAAGAGGTTAAAATGAAAATTTATCATGTGATGCATAGCAAGCTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * * ** * *** *
33714709 TATATGA-TTTTCTAATTTGATTTTTAAATATTAAAATTCAAATTTCGACACCAA-GTCTAATAG
66 TTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCTA-GGCAACTTCGGTTAC
*
33714772 AGAATCAAAGTTA
129 AGAATCAAAGATA
* * * * * * * *
33714785 GAGTATAAATTTATAAGAGGTTAAAATGGAGACTTACAATGTGATGCATAGCTAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * * * * *
33714850 CTTATGATTGTTTTAAATTT-A-TTTTAAGATTTTGAAACTCGAATTTTTAGGCGAAC-TCCGTT
66 TTTATGATT-TTTTTAATTTCATTTTTAA-ATATTAAAATTC-AATTTCTAGGC-AACTTCGGTT
* *
33714912 AC-GAAATTAAAGTTA
127 ACAG-AATCAAAGATA
* ** * ** * *
33714927 AAGTATAAGTTTTTAATTGGTTAAAATGGAAATTTACCATGTAATGCATATAAAATTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * ** *
33714992 TTTATGATTTTTTGTAATTTCATTTTTAGATATTAAAATTTGAATTTAGAGGCAACGTCGGTTA-
66 TTTATGATTTTTT-TAATTTCATTTTTAAATATTAAAA-TTCAATTTCTAGGCAACTTCGGTTAC
*
33715056 ACGAAT-AAGAAATA
129 A-GAATCAA-AGATA
* * * * * * *
33715070 AAGTTTGAATTTTTAAGAGGTTAAAATGGAAATTTATCATGGGATACATAGCAAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * **
33715135 TTTATGATTTTTTTTAAATTTCATTTTTAAATATTAAAATTCGAATTTCAAAGCCAA-GTCAATT
66 TTTATGA-TTTTTTT-AATTTCATTTTTAAATATTAAAATTC-AATTTC-TAGGCAACTTCGGTT
**
33715199 TGAGAATCAAAGATA
127 ACAGAATCAAAGATA
* * * *
33715214 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATAGCGAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * * * *
33715279 CTTATGATTGTCTTTAATTT-A-TTTTAAGATTTTGAAACTCGAATTT-TGAGGCAAAC-TCCGT
66 TTTATGATT-TTTTTAATTTCATTTTTAA-ATATTAAAATTC-AATTTCT-AGGC-AACTTCGGT
* *
33715340 TACGGAATTAAAGATA
126 TACAGAATCAAAGATA
* * * * * * *
33715356 GAGTATAAAATTTTAAGTGGTTAAAATGGAAATTTATCATATGATGCATAGCAAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * * * * *
33715421 TTTATGAGTTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCGAGACCAA-GTCGATTAT
66 TTTATGATTTTTTTAATTTCATTTTTAAATATTAAAA-TTCAATTTCTAG-GCAACTTCGGTTAC
33715485 AGAATCAAAGATA
129 AGAATCAAAGATA
* * * * ** * *
33715498 AAGTATAAATTTGTAAGAGGTTAAAATGGATATTTACAATGCGATGTGTAGCAAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * * * *
33715563 CTTATGATTCTTTTTAATTTCATTTTCAAATATT-AAATTACGAAATTCGAGGTGAA-GTCGGTT
66 TTTATGATT-TTTTTAATTTCATTTTTAAATATTAAAATT-C-AATTTCTAGG-CAACTTCGGTT
*
33715626 ATAGAATCAAAGATA
127 ACAGAATCAAAGATA
* * * * * **
33715641 AAGTATAATTTTTTAAGAGATTAAAATGAAAATTTACCATGTGATGCATAGCGAAGTTCTCATGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * * * * *
33715706 CTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCCAATTTGACT-CG-AA-GTCCGAT
66 TTTATGATT-TTTTTAATTTCATTTTTAAATATT-AAAATTCAATTT--CTAGGCAACTTCGGTT
* *
33715768 ACGGAATTATAA-ATA
127 ACAGAATCA-AAGATA
* * * *
33715783 AAGTATAAACTTTTAAGAGGTTAAAATAGAAATTTACCATGTGATGCATAGAAAACTAT-TAGTG
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACT-TCTTGTG
** * * * ** *
33715847 TTTTGCG-CTTTTTTAATTTTATTTTTAAATATTAAAATTCGAGTTTGAAGGCAACGTCGGTT--
65 TTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCTAGGCAACTTCGGTTAC
33715909 ---AT-AAA-ATCA
129 AGAATCAAAGAT-A
* * *
33715918 AA-TATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * *
33715982 TTTATGATATTTTTTAATTTTATTTTTAAATATTAAAATTTGAATTTCAAGGCAA-TGTCGATTA
66 TTTATGAT-TTTTTTAATTTCATTTTTAAATATTAAAA-TTCAATTTCTAGGCAACT-TCGGTTA
33716046 CAGAATCAAAGATA
128 CAGAATCAAAGATA
* * * * *
33716060 AAGTATAAATTTTTAGGAGGTTAAAATAGAAATTTACCATGTGATGCATACCGAAGTTCTTGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * * * * * *
33716125 CTTATGATTCTTTTGAATTTCATTTTGAAAAATTGAAATTCGAAATTT-GAGTTG-AA-GTCCGT
66 TTTATGATT-TTTTTAATTTCATTTTTAAATATTAAAATTC--AATTTCTAG--GCAACTTCGGT
* **
33716187 TAC-GCAATTATGGATA
126 TACAG-AATCAAAGATA
* * * * * **
33716203 GAGTATAAACTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATAGAAAAGTAATTGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * * * * *
33716268 TTTGTGCTTTTTTTAATTTTATTTTTAAATATTAAAATTCGAGTTTCGAGGCAACATCAGTTACA
66 TTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCTAGGCAACTTCGGTTACA
* *
33716333 GAATAAAAGTTA
130 GAATCAAAGATA
* * * *
33716345 AAGTATAAATTTTTAAGAGGTTAAGATAGAAATTTATCATGTGATGCATAGCAAAATT-TTCGTG
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTT-GTG
* * * ** **
33716409 TTTTATGA-TTTCTTATATTTCATTTTTAAATATTAAAATTCAAATTTCGAGACAAAGTCAATTA
65 TTTTATGATTTTTTTA-ATTTCATTTTTAAATATTAAAATTC-AATTTCTAGGCAACTTCGGTTA
*
33716473 C-G----GAAGATA
128 CAGAATCAAAGATA
* * * ** *
33716482 AAGTATACAA-TTTTAAGAGTTTTAAATGGAAATTTACAATGTGATGCATAGTGGAA-TTCTCGT
1 AAGTATA-AATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG-CAAACTTCTTGT
* * * **
33716545 GTCTTATGATTGTTTTTAATTT-ATTTTTAAATATTGAAACTTGAATTTGGAGGCTAACTTC-GT
64 GTTTTATGATT-TTTTTAATTTCATTTTTAAATATT-AAAATTCAATTTCTAGGC-AACTTCGGT
* *
33716608 TACGGAATTAAAGATA
126 TACAGAATCAAAGATA
* * ** *** *** * *
33716624 AAGTATAAATTTGTAAGAGGTTAAAATGGATATTTAAAATG-GATTTTTTTTAAATTTCACT-T-
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTC-TTGTG
** * * ** * * ** ** *
33716686 TTAAAT-ATTAAAATTTGAATTTCATGGTCAAATCAATTATAGAA-TCAAATATAAAGTATAAAT
65 TTTTATGATT---TTTTTAATTTCATTTTTAAAT--ATTA-A-AATTC-AATTTCTAG-GCAACT
* * *
33716749 T--TTTA-AG-----AGGTTA
121 TCGGTTACAGAATCAAAGATA
** ** * * * * * **
33716762 AAGTGGAAA--TTTACCATGTGTT-ACATAGAAAACTT--CTTGTGTTTTAT-GC---CTT-TT-
1 AAGTATAAATTTTTAAGA-G-GTTAAAAT-GGAAATTTACCATGTGATGCATAGCAAACTTCTTG
* * * * ** * * * *
33716816 T-TAATT-TCA-TTTTTAAATATTAAAATTT-GA-A-T----TTC-A-----AGGTAACGTCGAT
63 TGT-TTTATGATTTTTTTAAT-TTCATTTTTAAATATTAAAATTCAATTTCTAGGCAACTTCGGT
*
33716865 TACAGAGTCAAAGATA
126 TACAGAATCAAAGATA
* * * * * * * * *
33716881 GAGTATAAATTTTAAAGAGGCTAAAATGGAAATTTATCATGTGATGTATAGCAAGCTACTCGTAT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * * * ** *
33716946 TTTATGA-CTTTTTAATTTGATTTTTAAATATTAAAATTCGAATTTCGAGCCCAA-GTCAATTAG
66 TTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCTAG-GCAACTTCGGTTAC
33717009 AGAATCAAAGATA
129 AGAATCAAAGATA
* * * * *
33717022 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATACATAGCGAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * * * * *
33717087 CTTATGATTGTTTTCAATTT-A-TTTTAAGATTTTGAAACTCAAACTTT-GAGGCAAAC-TCCGT
66 TTTATGATT-TTTTTAATTTCATTTTTAA-ATATTAAAATTC-AA-TTTCTAGGC-AACTTCGGT
* *
33717148 TACGGAATTAAAGATA
126 TACAGAATCAAAGATA
* * * * ** * *
33717164 AAGTGTAAATTTTTAAGTGGTTAAAAT-----TCT--C-T-TGTTTTAT-G---A-GTCTT-TAT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * * * * * ** *
33717214 AATT-TCA-TTTTTAAATATTAAATTTTGAAT-TT-CAAGGCAACGTTGGT-TA--CAGA-ATCA
66 -TTTATGATTTTTTTAAT-TTCATTTTTAAATATTAAAATTCAA--TT--TCTAGGCA-ACTTC-
** * * * **
33717271 AATATAAAGCATAAAATTTTTA
123 GGT-TACAGAATCAAA--GATA
* ** * * ** * * ** ** *
33717293 AGAGCT-TAAA-ATGGAA-A-TTTACCATATGGTGCA--TAGCGAAGTTCT-CA-AGTCTTA-TG
1 A-AG-TATAAATTTTTAAGAGGTTA--AAATGG-AAATTTA-CCATGTGATGCATAG-CAAACTT
* * * *** * ** * * * *
33717349 ATTCT-TTTTA--ATTTCATTTTTAAGTATTGAAACTCAAAT-TT-TGAGTCAAAGTACGTTACG
59 CTTGTGTTTTATGA-TT--TTTTTAA-T-TTCATTTTTAAATATTAAAATTC-AATTTC--TAGG
* ** * * * * ***
33717409 -AAATTATAGATAAAGTATAAACTTTTA
116 CAACTT-CGGTTACAGAATCAA-AGATA
* * * **
33717436 AGAGGT-TAAA--A--------------TGGAAATTTACCATGAGATGCATAGAAAACCACTTGT
1 A-A-GTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGT
** * * * * *
33717484 GTTTTGCGCTTTTTTAAATTTTATTTTAAAATATTAAAATTCAAATTT-TGAGGCAGCTTCGGTT
64 GTTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCT-AGGCAACTTCGGTT
*
33717548 ACAGAATAAAAGATA
127 ACAGAATCAAAGATA
* * * * * **
33717563 AAGTATAAATTTTTAAGAGGTTAAAATAGAAATTTATCATGTGATACATTGCAAACTTCTCGTAC
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * *
33717628 TTTATGATTTATTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCGAGGCCAA-GTCGGT
66 TTTATGA--T-TTTTTTAATTTCATTTTTAAATATTAAAA-TTCAATTTCTAGG-CAACTTCGGT
*
33717692 TATAGAATCAAAGATA
126 TACAGAATCAAAGATA
* * * * * *
33717708 AAGTATTAATTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATTCATAG-AGAAATTCTGGTG
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCA-AACTTCTTGTG
* * * * *
33717772 TCTTATGA-TTTTTTAATTT-ATTTTTAAATTTTGAAACTCGAATTT-TGAGGCGAAC-TCCGTT
65 TTTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCT-AGGC-AACTTCGGTT
*
33717833 ACGGAA--AAAGAT-
127 ACAGAATCAAAGATA
* ** * * ** * * * ** *
33717845 --GGA-AAA--TTTACCATGTGATGCATAGCATACTT--C-TCGTGATTTAT-G---A-TTGTT-
1 AAGTATAAATTTTTAAGAGGTTA-AAAT-GGAAATTTACCAT-GTGATGCATAGCAAACTTCTTG
* * * ** * * * * ** * *
33717896 T-TTAATT-TCA-TTTTTAAATATTAAAATTCAATTTTCTAGGCAAAGTC--GGT-TAAG-AA-A
63 TGTT--TTATGATTTTTTTAAT-TTCATTTTTAAATAT-TA---AAATTCAATTTCTAGGCAACT
* *
33717953 TC----AAAG-A-CACAGTATA
121 TCGGTTACAGAATCAAAG-ATA
* * ** ** ** * * ***
33717969 AATTTTTAAGA-GATTAAGATGG---AAATTTACAATGTGTTGCATAGCGAAGTTC-TAG-TGCC
1 AA-GTATAA-ATTTTTAAGA-GGTTAAAATGGA-AAT-T-TACCAT-GTG-A-TGCATAGCAAAC
* * * * *** * ** * * *
33718028 TTGTGAATCT-TTTTAAT-TTCTTTTTTAAATATTGAAACTCAAAT-TTTGAGTTCAAGTCCATT
57 TTCT---TGTGTTTT-ATGAT-TTTTTT-AAT-TTCATTTTTAAATATTAAAATTCAATTTC--T
*** * * ** *
33718090 ACGG-AA-TTATATATAAAGTAT-AAACTTTT
113 A-GGCAACTTCGGT-TACAGAATCAAA-GATA
** ** * * * **
33718119 AAG----AGGTTAAAA----------TGAAAACTTACCATGTGATGCATAGAAAACTAATTGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
** * * * * *
33718170 TTTCCGCTTTTTGTAATTTTATTTTTAAATATTAAAATTCGAGTTT-TAAGGCAACGTT-AGTTA
66 TTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCT-AGGCAAC-TTCGGTTA
*
33718233 CAAAATCAAAGATA
128 CAGAATCAAAGATA
* ** ** *
33718247 AAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCATGTGATGCATAGTGATGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * * * * *
33718312 CTTATGAATCTTTTTAATTTCATTCTTAAATATTGAAACTCGAATTT-TGGGGCAAAGTTC-GTT
66 TTTATG-ATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCT-AGGC-AACTTCGGTT
* *
33718375 AC-GAAATTATAGATA
127 ACAG-AATCAAAGATA
* * *
33718390 AAGTATATATTTTTAAGAGGTTAAAATAGAAATTTACCATGTGATGCATAGAAAACTTCTTGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * * *
33718455 TCTATGCTTTTTTTTATTTCATTTTTAAATTATTAAAATTCGAATTTCAAGGCAA-TGTCGATTA
66 TTTATGATTTTTTTAATTTCATTTTTAAA-TATTAAAATTC-AATTTCTAGGCAACT-TCGGTTA
33718519 CAGAATCAAAGATA
128 CAGAATCAAAGATA
* * * * * * *
33718533 AAGTATAAATTTTAAAGAGGCTAAAATAGAAATTTATCATATGATGCATAGCAAGCTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * *
33718598 TTTATGA--TTTTTAATTTGATTTTTAAATATTAAAATTCTAAATAT-AAGGCAACGTT-GGTTA
66 TTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTC--AATTTCTAGGCAAC-TTCGGTTA
33718659 CAGAATCAAAGATA
128 CAGAATCAAAGATA
* * ** * * * *
33718673 AAGTACAAATTTTTAAGAGGTTAAAATGAAAATTTATAATGTGATGCATAGCGAAGTTCTCGTGG
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * * *
33718738 CTTATGATTGTTTTTAATTT-A-TTTTAAGATTTTGAAACTCGAA-TTCTGAGGCAAAC-TCCGT
66 TTTATGATT-TTTTTAATTTCATTTTTAA-ATATTAAAATTC-AATTTCT-AGGC-AACTTCGGT
* *
33718799 TACGGAATTAAAGATA
126 TACAGAATCAAAGATA
* * * **
33718815 AAGTATAAATTTTTAAGTGGTTAAAATTGAAATTTACCATGTGATGCATAGAAAACTTCTCATGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * * *
33718880 TTTATGATTTTTTATAATATCATTTTAAAATTTTAAAATTCGAATTTCGAGGCAA-TGTCGGCTA
66 TTTATGATTTTTT-TAATTTCATTTTTAAATATTAAAATTC-AATTTCTAGGCAACT-TCGGTTA
* *
33718944 CAGAATGAAATATA
128 CAGAATCAAAGATA
* * * *
33718958 AAGTATAAATTTTGAAGTGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGA
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * *
33719023 TTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTTGATTTTCTAAGCGAA-GTCGGTTAC
66 TTTATGATTTTTTTAATTTCATTTTTAAATATTAAAA-TTCAATTTCTAGGC-AACTTCGGTTAC
*
33719087 AGAATCAAAGATTC
129 AGAATCAAAGA-TA
* * *
33719101 AA-TATAAATTTTTAAGAGGTTAATATGGAAATTTACAATGTGATGCATAGTGAAGTACTTCTTG
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG-CAA--ACTTCTTG
* * * * * * * *
33719165 TGTCTTATTAATCTTTTTAATTTCATTTTTAAATATTGATACTCAAATTTCGAGGCGAAGC--CC
63 TGTTTTA-TGATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCTAGGC-AA-CTTCG
33719228 GTTACAGAATCAAAGATA
124 GTTACAGAATCAAAGATA
* * * * **
33719246 AAGTATAAATTTTTAAGAGGTTAAATTAGAAATTTACCATGTGATGCGTAGAAAACTAATTGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
** * * * *
33719311 TTTGCGCTTTTTTTAATTTTATTTTTAAATATTAAAATTCGAGTTT-TAAGGCAACGTCGGTTAC
66 TTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCT-AGGCAACTTCGGTTAC
33719375 A-AAGTCAAAGATA
129 AGAA-TCAAAGATA
* * * * * * ** *
33719388 GAGTATAAGTTTTTAAGAGGCTAGAAA-GGAAGTTTGCCATGTGATGCATAGCGATGTTCTCGTG
1 AAGTATAAATTTTTAAGAGGTTA-AAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTG
* * * * ** *
33719452 TCTTATGAGTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTGT-GGGGCAAAGTTC-GT
65 TTTTATGA-TTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATT-TCTAGGC-AACTTCGGT
* *
33719515 TACAGAATTATAGATA
126 TACAGAATCAAAGATA
* * * *
33719531 AAGTATATATTTTTAAGAGGTTAAAATGAAAATTTACCATGTGATGCGTAGAAAACTTCTTGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* ** *
33719596 TTTATGCTTTTTTTTAATTTCATTTTTAAATATTAAAATTCAAATTTGAAGGCAACGTCGGTTAC
66 TTTATG-ATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCTAGGCAACTTCGGTTAC
33719661 AGAATCAAAGATA
129 AGAATCAAAGATA
* * * * * *
33719674 AAGTATAAATTTTAAAGATGTTAAAATAGAAATTTATCATGTGATGCATAGCAAGCTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * * * * *
33719739 TATATGA-TTTTTTAATTTGATTTTTAAATATTAAAACTCGAATTTCGAGGCCAAGTT-AGTTAG
66 TTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCTAGG-CAACTTCGGTTAC
33719802 AGAATCAAAGATA
129 AGAATCAAAGATA
* * * ** * * *
33719815 GAA-TATAATTTTTTAATATGTTAAAATGGAAATTTATAATGTGATGCATAGCGAAGTTCTCGTG
1 -AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTG
** * * * *
33719879 CCTTATGATTGTTTTTAATTT-ATTTTTAGATTTTGAAACTCGAATTT-TGAGGCGAAC-T--GT
65 TTTTATGATT-TTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCT-AGGC-AACTTCGGT
*
33719939 TACTA-AATTAAAGATA
126 TAC-AGAATCAAAGATA
* * * **
33719955 AAGTATAAATTTTTAAGTGGTTAAAATGGAAATTTACCATGGGATGTATATAAAACTTCTTGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * *
33720020 TTTATGATATTTTTATAATTTCATTTTTAAATAGTAAAATTCGAATTTCGAGGCAACGTT-AGTT
66 TTTATGAT-TTTTT-TAATTTCATTTTTAAATATTAAAATTC-AATTTCTAGGCAAC-TTCGGTT
33720084 ACAGAATCAAAGATA
127 ACAGAATCAAAGATA
* * * * * * *
33720099 AAGTATAAATTTTT-AGTGGTTAAAATAGAAATTTATCATGTGATGCATAGCATAGTTCTCGCGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * *
33720163 TTTATGATTTTTTTTAATTTCATTTTTAAGTATTAAAATTCAAATTT-TGAGGCCAA-GTCGATT
66 TTTATGA-TTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCT-AGG-CAACTTCGGTT
33720226 ACAGAATCAAAGATA
127 ACAGAATCAAAGATA
* * * * * * *
33720241 AAATATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATGGCGAAGTTCTCGTCT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * * * * *
33720306 GTTATGATTGTTTTCAATTTCATTTTTGAATATTGAAACTCGAATTT-TGAGGTGAAGC--CTGT
66 TTTATGATT-TTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCT-AGG-CAA-CTTCGGT
* * *
33720368 TACGGAATGAAAGAAA
126 TACAGAATCAAAGATA
* * * * * * * ***
33720384 AAATATAAATTTTTAAGTGGTTAAAATGAAAATTTACAATGTGATGAATGGAAAACTAAATGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
** * * * * * * *
33720449 TTTGCG-TTTTTTTAATTTTATTTTTAAATGTTAAAATTTGAAATTCGAGGCAACCTCGATTACA
66 TTTATGATTTTTTTAATTTCATTTTTAAATATTAAAA-TTCAATTTCTAGGCAACTTCGGTTACA
*
33720513 GAATTAAAGATA
130 GAATCAAAGATA
* * * * * * * *
33720525 AAATATAAATTTTTAAGAGGTTTAGATGGAAGTTTATCATGTGATGCATAGCAAATTTGTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * * ** *
33720590 TTTATGATTTTTTAAATTTCATTTTTAAATATTAAAATTCGAATGTCAAGGTAAAGTCAGTTACA
66 TTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTC-AATTTCTAGGCAACTTCGGTTACA
*
33720655 AAATCAAAGATA
130 GAATCAAAGATA
* * ** * * * *
33720667 AAATATAAGTTTTTAAGAGGTTAAAATAAAAATTTACAATGTGATGCATAGCGAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
* * * *
33720732 CTTATAATTGTTTTTAATAT-ATTTTTAAATATTGAAATT
66 TTTATGATT-TTTTTAATTTCATTTTTAAATATTAAAATT
33720771 GGCAAACTCT
Statistics
Matches: 5785, Mismatches: 1316, Indels: 920
0.72 0.16 0.11
Matches are distributed among these distances:
111 4 0.00
112 2 0.00
113 3 0.00
114 2 0.00
117 1 0.00
119 20 0.00
120 4 0.00
121 14 0.00
122 7 0.00
123 2 0.00
124 4 0.00
125 22 0.00
126 28 0.00
127 47 0.01
128 89 0.02
129 44 0.01
130 40 0.01
131 21 0.00
132 37 0.01
133 18 0.00
134 79 0.01
135 7 0.00
136 56 0.01
137 106 0.02
138 50 0.01
139 23 0.00
140 290 0.05
141 610 0.11
142 1672 0.29
143 1741 0.30
144 231 0.04
145 164 0.03
146 212 0.04
147 3 0.00
148 47 0.01
149 58 0.01
150 27 0.00
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (141 bp):
AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTTGTGT
TTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTCAATTTCTAGGCAACTTCGGTTACAG
AATCAAAGATA
Found at i:33713898 original size:285 final size:281
Alignment explanation
Indices: 33713069--33720770 Score: 4767
Period size: 285 Copynumber: 27.4 Consensus size: 281
33713059 AGTGACCATC
*
33713069 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTG-TGCATAGCGAAA-TTCTCGTG
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGC-AAACTTCTCGTG
* * * *
33713132 TCTTATGATTTTTTTAA-TTTATTTTTAAATATTGAAACTCGAATTT-TGAGGCAAAC-TCCGTT
65 TTTTATGATTTTTTTAATTTTATTTTTAAATATTAAAATTC-AATTTCT-AGGC-AACGTCGGTT
* * * *
33713194 ACGGAATTAAAGATAAAGTATAAATTTTTAAGTGGTTAAAATGGAAATTTACCTTGT-ATTGCAT
127 ACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGA-TGCAT
** * ** * * * **
33713258 AGAAAACTTCTATTGTTTTATGAATTTTTATAATTTCATTTTTAAATATAAAAATTCAAATTTCA
191 AGCGAAGTTCTCGTGTCTTATG-ATTTTT-TAATTTCATTTTTAAATATTAAAACTCAAATTTTG
* * * * *
33713323 AG-GCAATGTCGGTTGCAGAATCAAATATA
254 AGCG-AA-GTCCGTTACGGAATTAAAGATA
33713352 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATATTACATAGCAAACTT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATG-------CATAGCAAACTT
* * * * * *
33713417 CTTGTGATTTATGATTTTTTTAATTTCATTTTTAAATGTTAAAATTCGATTTTCTAGGCAAAGTC
59 CTCGTGTTTTATGATTTTTTTAATTTTATTTTTAAATATTAAAATTC-AATTTCTAGGCAACGTC
* ** * ** * *
33713482 GGTTACAAAAT-AAAGATACTGTATAATTTTTTAAGAGACTAAGATGGAAATTTACAATGTGATG
123 GGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATG
* * *
33713546 CATAGCGAAGTTCTCGTGTCTTATGAATCTTTTTAATTACATTTTAAAATATTAAAACTCGAATT
188 CATAGCGAAGTTCTCGTGTCTTATG-AT-TTTTTAATTTCATTTTTAAATATTAAAACTCAAATT
* *
33713611 TTGAGTTGAAGTCCGTTACGGAATTATAGATA
251 TTGAG-CGAAGTCCGTTACGGAATTAAAGATA
* * ** * *
33713643 AAGTATAAACTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTAATTGTAT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGT
* * * *
33713708 TTTGTGCTTTTTTTAATTTTATTTTTAAATATTAAAATTCAAGTTTCTAGACAACTTCGGTTACA
66 TTTATGATTTTTTTAATTTTATTTTTAAATATTAAAATTCAA-TTTCTAGGCAACGTCGGTTACA
* * * *
33713773 AAATCAAAGTTAAAGTATAAATTTATAAGAGGTTAGAAA-GGAAGTTTACCATGTGATGCATAGC
130 GAATCAAAGATAAAGTATAAATTTTTAAGAGGTTA-AAATGGAAATTTACCATGTGATGCATAGC
* *
33713837 GAAGTTCTCGTGTCTTATGAGTATTTTTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGA
194 GAAGTTCTCGTGTCTTATGA-T-TTTTTAATTTCATTTTTAAATATTAAAACTCAAATTTTGAGC
* ** * *
33713902 AAATGTTTGTTATGGAATTATAGATA
257 GAA-GTCCGTTACGGAATTAAAGATA
* * ** * *
33713928 AAGTATATATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTAATTGTAT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGT
* * * * *
33713993 TTTGTGCTTTTTTTAATTTTATTTTTAAATATTAAAATTCAAGTTTCGAGACAACTTCGGTTACA
66 TTTATGATTTTTTTAATTTTATTTTTAAATATTAAAATTCAA-TTTCTAGGCAACGTCGGTTACA
* * * * *
33714058 AAATCAAAGTTAAAGTATAAATTTATAAGAGGTTAAAAAGGAAGTTTACCATGTGATGCATAGCG
130 GAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCG
* **
33714123 AAGTTCTCGTGTCTTATGAGTATTTTTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGAA
195 AAGTTCTCGTGTCTTATGA-T-TTTTTAATTTCATTTTTAAATATTAAAACTCAAATTTTGAGCG
**
33714188 AATGTTTGTTACGGAA-TAATAGATA
258 AA-GTCCGTTACGGAATTAA-AGATA
* * ** * *
33714213 AAGTATATATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTAATTGTAT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGT
* * * * *
33714278 TTTGTGCTTTTTTTAATTTTATTTTTAAATATTAAAATTCAAGTTTCGAGACAACTTCGGTTACA
66 TTTATGATTTTTTTAATTTTATTTTTAAATATTAAAATTCAA-TTTCTAGGCAACGTCGGTTACA
* * * * *
33714343 AAATCAAAGTTAAAGTATAAATTTATAAGAGGTTAAAAAGGAAGTTTACCATGTGATGCATAGCG
130 GAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCG
* **
33714408 AAGTTCTCGTGTCTTATGAGTATTTTTAATTTCATTTTTAAATATTGAAACTCAAATTTTGAGAA
195 AAGTTCTCGTGTCTTATGA-T-TTTTTAATTTCATTTTTAAATATTAAAACTCAAATTTTGAGCG
** *
33714473 AATGTTTGTTACGGAATTATAGATA
258 AA-GTCCGTTACGGAATTAAAGATA
* * **
33714498 AAGTATATATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGAAAACTTCTTATGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGT
* *
33714563 TTTATGCTTCTGTTTTTTAATTTTATTTTTAAATATTAAAATTTGC-ATTT-TAAGTCAACGTCG
66 TTTATG---AT-TTTTTTAATTTTATTTTTAAATATTAAAA-TT-CAATTTCT-AGGCAACGTCG
* * * *
33714626 ATTACAGAATCAAAGATAAAGTATAAATTTTAAAGAGGTTAAAATGAAAATTTATCATGTGATGC
124 GTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGC
* * *
33714691 ATAGC-AAGCTTCTCGTGT-TATATGATTTTCTAATTTGATTTTTAAATATTAAAATTCAAATTT
189 ATAGCGAAG-TTCTCGTGTCT-TATGATTTTTTAATTTCATTTTTAAATATTAAAACTCAAATTT
* * * *** * *
33714754 CGACACCAAGTCTAATA-GAGAATCAAAGTTA
252 TGA-GCGAAGTCCGTTACG-GAATTAAAGATA
* * * * * * *
33714785 GAGTATAAATTTATAAGAGGTTAAAATGGAGACTTACAATGTGATGCATAGCTAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGT
* * * * * * * *
33714850 CTTATGATTGTTTTAAATTTA-TTTTAAGATTTTGAAACTCGAATTTTTAGGCGAAC-TCCGTTA
66 TTTATGATTTTTTTAATTTTATTTTTAA-ATATTAAAATTC-AATTTCTAGGC-AACGTCGGTTA
* * * ** *
33714913 C-GAAATTAAAGTTAAAGTATAAGTTTTTAATTGGTTAAAATGGAAATTTACCATGTAATGCATA
128 CAG-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATA
*** * * * * ** *
33714977 TAAAATTTCTCGTGTTTTATGATTTTTTGTAATTTCATTTTTAGATATTAAAATTTGAATTTAGA
192 GCGAAGTTCTCGTGTCTTATGA-TTTTT-TAATTTCATTTTTAAATATTAAAACTCAAATTTTGA
* *
33715042 G-GCAACGTCGGTTAAC-GAA-TAAGAAATA
255 GCG-AA-GTCCGTT-ACGGAATTAA-AGATA
* * * * * *
33715070 AAGTTTGAATTTTTAAGAGGTTAAAATGGAAATTTATCATGGGATACATAGCAAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGT
* * * **
33715135 TTTATGATTTTTTTTAAATTTCATTTTTAAATATTAAAATTCGAATTTCAAAGCCAA-GTCAATT
66 TTTATGA-TTTTTTT-AATTTTATTTTTAAATATTAAAATTC-AATTTC-TAGGCAACGTCGGTT
** *
33715199 TGAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATA
127 ACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATA
* * *
33715264 GCGAAGTTCTCGTGTCTTATGATTGTCTTTAATTT-A-TTTTAAGATTTTGAAACTCGAATTTTG
192 GCGAAGTTCTCGTGTCTTATGATT-T-TTTAATTTCATTTTTAA-ATATTAAAACTCAAATTTTG
* *
33715327 AGGCAAACTCCGTTACGGAATTAAAGATA
254 A-GCGAAGTCCGTTACGGAATTAAAGATA
* * * * * *
33715356 GAGTATAAAATTTTAAGTGGTTAAAATGGAAATTTATCATATGATGCATAGCAAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGT
* * * * * * *
33715421 TTTATGAGTTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCGAGACCAA-GTCGATTAT
66 TTTATGATTTTTTTAATTTTATTTTTAAATATTAAAA-TTCAATTTCTAG-GCAACGTCGGTTAC
* * * * **
33715485 AGAATCAAAGATAAAGTATAAATTTGTAAGAGGTTAAAATGGATATTTACAATGCGATGTGTAGC
129 AGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGC
* * * *
33715550 AAAGTTCTCGTGTCTTATGATTCTTTTTAATTTCATTTTCAAATATTAAATTAC-GAAA-TTCGA
194 GAAGTTCTCGTGTCTTATGA-T-TTTTTAATTTCATTTTTAAATATTAAA--ACTCAAATTTTGA
* * ** *
33715613 GGTGAAGTCGGTTATAGAATCAAAGATA
255 -GCGAAGTCCGTTACGGAATTAAAGATA
* * * * * *
33715641 AAGTATAATTTTTTAAGAGATTAAAATGAAAATTTACCATGTGATGCATAGCGAAGTTCTCATGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGT
* * * * * * *
33715706 CTTATGATTCTTTTTAATTTCATTTTTAAATATTGAAACTCCAATTTGACT-CG-AA-GTCCGAT
66 TTTATGATT-TTTTTAATTTTATTTTTAAATATT-AAAATTCAATTT--CTAGGCAACGTCGGTT
* * * *
33715768 ACGGAATTATAA-ATAAAGTATAAACTTTTAAGAGGTTAAAATAGAAATTTACCATGTGATGCAT
127 ACAGAATCA-AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCAT
** * * * ** * * * * *
33715832 AGAAAACTAT-TAGTGTTTTGCGCTTTTTTAATTTTATTTTTAAATATTAAAATTC-GAGTTTGA
191 AGCGAAGT-TCTCGTGTCTTATGATTTTTTAATTTCATTTTTAAATATTAAAACTCAAATTTTG-
*
33715895 AG-GCAA---CG-T-CGG--TTATAAAATCA
254 AGCG-AAGTCCGTTACGGAATTA-AAGAT-A
* *
33715918 AA-TATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCATGTGATGCATAGCAAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGT
* * * *
33715982 TTTATGATATTTTTTAATTTTATTTTTAAATATTAAAATTTGAATTTCAAGGCAATGTCGATTAC
66 TTTATGAT-TTTTTTAATTTTATTTTTAAATATTAAAA-TTCAATTTCTAGGCAACGTCGGTTAC
* * *
33716047 AGAATCAAAGATAAAGTATAAATTTTTAGGAGGTTAAAATAGAAATTTACCATGTGATGCATACC
129 AGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGC
* * * * *
33716112 GAAGTTCTTGTGTCTTATGATTCTTTTGAATTTCATTTTGAAAAATTGAAATTCGAAA-TTTGAG
194 GAAGTTCTCGTGTCTTATGATT-TTTT-AATTTCATTTTTAAATATTAAAACTC-AAATTTTGAG
* * **
33716176 TTGAAGTCCGTTACGCAATTATGGATA
256 -CGAAGTCCGTTACGGAATTAAAGATA
* * * * * ** *
33716203 GAGTATAAACTTTTAAGAGGTTAAAATGGAAATTTATCATGTGATGCATAGAAAAGTAATTGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGT
* * * * * *
33716268 TTTGTGCTTTTTTTAATTTTATTTTTAAATATTAAAATTCGAGTTTCGAGGCAACATCAGTTACA
66 TTTATGATTTTTTTAATTTTATTTTTAAATATTAAAATTC-AATTTCTAGGCAACGTCGGTTACA
* * * * * *
33716333 GAATAAAAGTTAAAGTATAAATTTTTAAGAGGTTAAGATAGAAATTTATCATGTGATGCATAGCA
130 GAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCG
* * * * * * *
33716398 AAATTTTCGTGTTTTATGATTTCTTATATTTCATTTTTAAATATTAAAATTCAAATTTCGAGACA
195 AAGTTCTCGTGTCTTATGATTTTTTA-ATTTCATTTTTAAATATTAAAACTCAAATTTTGAG-CG
**
33716463 AAGTCAATTACGG-----AAGATA
258 AAGTCCGTTACGGAATTAAAGATA
* * * **
33716482 AAGTATACAA-TTTTAAGAGTTTTAAATGGAAATTTACAATGTGATGCATAGTGGAA-TTCTCGT
1 AAGTATA-AATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG-CAAACTTCTCGT
* * * ** *
33716545 GTCTTATGATTGTTTTTAA-TTTATTTTTAAATATTGAAACTTGAATTTGGAGGCTAACTTC-GT
64 GTTTTATGATT-TTTTTAATTTTATTTTTAAATATT-AAAATTCAATTTCTAGGC-AACGTCGGT
* * * * ** ***
33716608 TACGGAATTAAAGATAAAGTATAAATTTGTAAGAGGTTAAAATGGATATTTAAAATG-GATTTTT
126 TACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCAT
**** * * * * ** * ** * ** *
33716672 TTTAAATTTCACTTTTAAATATTAAAATTTGAATTTCATGGTCAAATCAATTATAGAA-TCAAA-
191 AGCGAAGTTCTCGTGT-CTTA-TGATTTTTTAATTTCATTTTTAAAT--ATTA-A-AACTCAAAT
* * ***** *
33716735 TAT-A---AAGT---ATAAATTTTTAAGAGGTTA
250 TTTGAGCGAAGTCCGTTACGGAATTAA-A-GATA
** ** * * * * * **
33716762 AAGTGGAAA--TTTACCATGTGTT-ACATAGAAAACTT--CTTGTGTTTTAT-G----C--CT--
1 AAGTATAAATTTTTAAGA-G-GTTAAAAT-GGAAATTTACCATGTGATGCATAGCAAACTTCTCG
** * * * ** * * *
33716813 T-TTTTA--ATTTCATT--TTTAAATATTAAA-ATT-TG----AATTTCAAGGTAACGTCGATTA
63 TGTTTTATGATTTTTTTAATTTTATTTTTAAATATTAAAATTCAATTTCTAGGCAACGTCGGTTA
* * * * * *
33716867 CAGAGTCAAAGATAGAGTATAAATTTTAAAGAGGCTAAAATGGAAATTTATCATGTGATGTATAG
128 CAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG
* * * * * * * *
33716932 C-AAGCTACTCGTATTTTATGACTTTTTAATTTGATTTTTAAATATTAAAATTCGAATTTCGAGC
193 CGAAG-TTCTCGTGTCTTATGATTTTTTAATTTCATTTTTAAATATTAAAACTCAAATTTTGAG-
* ** *
33716996 CCAAGTCAATTA-GAGAATCAAAGATA
256 CGAAGTCCGTTACG-GAATTAAAGATA
* * * *
33717022 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATACATAGCGAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGT
* * * * * * *
33717087 CTTATGATTGTTTTCAA-TTTA-TTTTAAGATTTTGAAACTCAAACTTT-GAGGCAAAC-TCCGT
66 TTTATGATT-TTTTTAATTTTATTTTTAA-ATATTAAAATTC-AA-TTTCTAGGC-AACGTCGGT
* * * * * **
33717148 TACGGAATTAAAGATAAAGTGTAAATTTTTAAGTGGTTAAAAT-----TCT--C-T-TG-T-TTT
126 TACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCAT
* * * * * * * * * * ** *
33717202 A-TG-AG-TCT-TTATAATT-TCATTTTTAAATATTAAATTTTGAAT-TT-CAAGGCAACGTTGG
191 AGCGAAGTTCTCGTGT-CTTATGATTTTTTAAT-TTCATTTTTAAATATTAAAACTCAA-ATT--
33717260 TT-A-CAGAA-T-C---A---AATATAAAGCATA
251 TTGAGC-GAAGTCCGTTACGGAAT-TAAAG-ATA
* ** * ** * * ** * **
33717284 AA--AT---TTTTAAGAG-CTTAAAATGGAAATTTACCATATGGTGCATAGC---G-AAGTTCTC
1 AAGTATAAATTTTTA-AGAGGTTAAAATGGAAATTTAC-CAT-GTG-AT-GCATAGCAAACT-TC
** * * * * * * * * *
33717339 AAGTCTTATGAT--TCTTTTTAATTTCATTTTTAAGTATTGAAACTCAAATTT-TGAGTCAAAGT
60 TCGTGTT-TTATGATTTTTTTAATTTTATTTTTAAATATTAAAATTC-AATTTCT-AGGCAACGT
* * * *
33717401 AC-GTTAC-GAAATTATAGATAAAGTATAAACTTTTAAGAGGTTAAAATGGAAATTTACCATGAG
122 -CGGTTACAG-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTG
** *** * * ** * * * *
33717464 ATGCATAGAAAACCACTTGTGTTTTGCGCTTTTTTAAATTTTATTTTAAAATATTAAAATTCAAA
185 ATGCATAGCGAAGTTCTCGTGTCTTATGATTTTTT-AATTTCATTTTTAAATATTAAAACTCAAA
* * * *
33717529 TTTTGAG-GCAGCTTCGGTTACAGAATAAAAGATA
249 TTTTGAGCGAAG--TCCGTTACGGAATTAAAGATA
* * * * **
33717563 AAGTATAAATTTTTAAGAGGTTAAAATAGAAATTTATCATGTGATACATTGCAAACTTCTCGTAC
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGT
* * *
33717628 TTTATGATTTATTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCGAGGCCAA-GTCGGT
66 TTTATGA--T-TTTTTTAATTTTATTTTTAAATATTAAAA-TTCAATTTCTAGG-CAACGTCGGT
* * * * *
33717692 TATAGAATCAAAGATAAAGTATTAATTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATTCAT
126 TACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCAT
* * * * * *
33717757 AGAGAAATTCTGGTGTCTTATGATTTTTTAATTT-ATTTTTAAATTTTGAAACTCGAATTTTGAG
191 AGCGAAGTTCTCGTGTCTTATGATTTTTTAATTTCATTTTTAAATATTAAAACTCAAATTTTGA-
*
33717821 GCGAACTCCGTTACGGAA--AAAGAT-
255 GCGAAGTCCGTTACGGAATTAAAGATA
* ** * * ** * * * **
33717845 --GGA-AAA--TTTACCATGTGATGCATAGCATACTT--C-TCGTGATTTAT-G---A--T-T-G
1 AAGTATAAATTTTTAAGAGGTTA-AAAT-GGAAATTTACCAT-GTGATGCATAGCAAACTTCTCG
** * * * ** * ** * * * **
33717894 T-TTTTA--ATTTCATT--TTTAAATATTAAA-ATTCAATTTTCTA-GGCAAAGTC--GGTTAAG
63 TGTTTTATGATTTTTTTAATTTTATTTTTAAATATT-AAAATTCAATTTC-TAGGCAACG-TCGG
** * * * * ** ** **
33717950 AAATCA-AAGACACAGTATAAATTTTTAAGA-GATTAAGATGG---AAATTTACAATGTGTTGCA
125 TTA-CAGAA-TCAAAG-ATAAA-GTATAA-ATTTTTAAGA-GGTTAAAATGGA-AAT-T-TACCA
* * * * * * * * * * * * * *
33718010 TAGCGAAG--T-TC-TAGTGCCTTGTGAATCTTTTTAATTTCTTT--TTTAAATATTGAA-ACTC
181 T-GTGATGCATAGCGAAGT-TCTCGTG--TC-TTATGATTT-TTTAATTTCATTTTTAAATATTA
* *** * ** * * * * ***
33718068 AAATTTTGAGTTCAAGTC-CATTACG-GAATTATATATAAAG-T-
240 AAACTCAAATTTTGAG-CGAAGTCCGTTACGGA-AT-TAAAGATA
* * * * ** *
33718109 -A-TA-AAC-TTTTAAGAGGTTAAAATGAAAACTTACCATGTGATGCATAGAAAACTAATTGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGT
** * * * **
33718170 TTTCCGCTTTTTGTAATTTTATTTTTAAATATTAAAATTCGAGTTT-TAAGGCAACGTTAGTTAC
66 TTTATGATTTTTTTAATTTTATTTTTAAATATTAAAATTC-AATTTCT-AGGCAACGTCGGTTAC
* * *
33718234 AAAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCATGTGATGCATAGT
129 AGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGC
* * * * *
33718299 GATGTTCTCGTGTCTTATGAATCTTTTTAATTTCATTCTTAAATATTGAAACTCGAATTTTGGGG
194 GAAGTTCTCGTGTCTTATG-AT-TTTTTAATTTCATTTTTAAATATTAAAACTCAAATTTT-GAG
* * * *
33718364 CAAAGTTCGTTACGAAATTATAGATA
256 CGAAGTCCGTTACGGAATTAAAGATA
* * * *
33718390 AAGTATATATTTTTAAGAGGTTAAAATAGAAATTTACCATGTGATGCATAGAAAACTTCTTGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGT
* * * * * * *
33718455 TCTATGCTTTTTTTTATTTCATTTTTAAATTATTAAAATTCGAATTTCAAGGCAATGTCGATTAC
66 TTTATGATTTTTTTAATTTTATTTTTAAA-TATTAAAATTC-AATTTCTAGGCAACGTCGGTTAC
* * * * *
33718520 AGAATCAAAGATAAAGTATAAATTTTAAAGAGGCTAAAATAGAAATTTATCATATGATGCATAGC
129 AGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGC
* * * * *
33718585 -AAGCTTCTCGTGTTTTATGA-TTTTTAATTTGATTTTTAAATATTAAAATTCTAAA-TATAAG-
194 GAAG-TTCTCGTGTCTTATGATTTTTTAATTTCATTTTTAAATATTAAAACTC-AAATTTTGAGC
** * *
33718646 GCAACGTTGGTTACAGAATCAAAGATA
257 G-AA-GTCCGTTACGGAATTAAAGATA
* * ** * * *
33718673 AAGTACAAATTTTTAAGAGGTTAAAATGAAAATTTATAATGTGATGCATAGCGAAGTTCTCGTGG
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGT
* * * * *
33718738 CTTATGATTGTTTTTAA-TTTA-TTTTAAGATTTTGAAACTCGAA-TTCTGAGGCAAAC-TCCGT
66 TTTATGATT-TTTTTAATTTTATTTTTAA-ATATTAAAATTC-AATTTCT-AGGC-AACGTCGGT
* * * *
33718799 TACGGAATTAAAGATAAAGTATAAATTTTTAAGTGGTTAAAATTGAAATTTACCATGTGATGCAT
126 TACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCAT
** * * * * * * * * *
33718864 AGAAAACTTCTCATGTTTTATGATTTTTTATAATATCATTTTAAAATTTTAAAATTCGAATTTCG
191 AGCGAAGTTCTCGTGTCTTATGA-TTTTT-TAATTTCATTTTTAAATATTAAAACTCAAATTTTG
* * * * *
33718929 AG-GCAATGTCGGCTACAGAATGAAATATA
254 AGCG-AA-GTCCGTTACGGAATTAAAGATA
* * *
33718958 AAGTATAAATTTTGAAGTGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGA
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGT
* * * *
33719023 TTTATGATTTTTTTAATTTCATTTTTAAATATTAAAATTTGATTTTCTAAGCGAA-GTCGGTTAC
66 TTTATGATTTTTTTAATTTTATTTTTAAATATTAAAA-TTCAATTTCTAGGC-AACGTCGGTTAC
* * *
33719087 AGAATCAAAGATTCAA-TATAAATTTTTAAGAGGTTAATATGGAAATTTACAATGTGATGCATAG
129 AGAATCAAAGA-TAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAG
* * * * * *
33719151 TGAAGTACTTCTTGTGTCTTATTAATCTTTTTAATTTCATTTTTAAATATTGATACTCAAATTTC
193 CGAAG---TTCTCGTGTCTTA-TGAT-TTTTTAATTTCATTTTTAAATATTAAAACTCAAATTTT
* * *
33719216 GAGGCGAAGCCCGTTACAGAATCAAAGATA
253 GA-GCGAAGTCCGTTACGGAATTAAAGATA
* * * * ** *
33719246 AAGTATAAATTTTTAAGAGGTTAAATTAGAAATTTACCATGTGATGCGTAGAAAACTAATTGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGT
** * *
33719311 TTTGCGCTTTTTTTAATTTTATTTTTAAATATTAAAATTCGAGTTT-TAAGGCAACGTCGGTTAC
66 TTTATGATTTTTTTAATTTTATTTTTAAATATTAAAATTC-AATTTCT-AGGCAACGTCGGTTAC
* * * * *
33719375 A-AAGTCAAAGATAGAGTATAAGTTTTTAAGAGGCTAGAAA-GGAAGTTTGCCATGTGATGCATA
129 AGAA-TCAAAGATAAAGTATAAATTTTTAAGAGGTTA-AAATGGAAATTTACCATGTGATGCATA
* * * *
33719438 GCGATGTTCTCGTGTCTTATGAGTCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTGTGG
192 GCGAAGTTCTCGTGTCTTATGA-T-TTTTTAATTTCATTTTTAAATATTAAAACTCAAATT-TTG
* * * * *
33719503 GGCAAAGTTCGTTACAGAATTATAGATA
254 AGCGAAGTCCGTTACGGAATTAAAGATA
* * * * *
33719531 AAGTATATATTTTTAAGAGGTTAAAATGAAAATTTACCATGTGATGCGTAGAAAACTTCTTGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGT
* * **
33719596 TTTATGCTTTTTTTTAATTTCATTTTTAAATATTAAAATTCAAATTTGAAGGCAACGTCGGTTAC
66 TTTATG-ATTTTTTTAATTTTATTTTTAAATATTAAAATTC-AATTTCTAGGCAACGTCGGTTAC
* * * *
33719661 AGAATCAAAGATAAAGTATAAATTTTAAAGATGTTAAAATAGAAATTTATCATGTGATGCATAGC
129 AGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGC
* * *
33719726 -AAGCTTCTCGTGT-TATATGATTTTTTAATTTGATTTTTAAATATTAAAACTCGAATTTCGAGG
194 GAAG-TTCTCGTGTCT-TATGATTTTTTAATTTCATTTTTAAATATTAAAACTCAAATTTTGA-G
* ** *
33719789 CCAAGTTAGTTA-GAGAATCAAAGATA
256 CGAAGTCCGTTACG-GAATTAAAGATA
* * * ** * *
33719815 GAA-TATAATTTTTTAATATGTTAAAATGGAAATTTATAATGTGATGCATAGCGAAGTTCTCGTG
1 -AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTG
** * * * *
33719879 CCTTATGATTGTTTTTAA-TTTATTTTTAGATTTTGAAACTCGAATTT-TGAGGCGAAC-T--GT
65 TTTTATGATT-TTTTTAATTTTATTTTTAAATATTAAAATTC-AATTTCT-AGGC-AACGTCGGT
* * * *
33719939 TACTA-AATTAAAGATAAAGTATAAATTTTTAAGTGGTTAAAATGGAAATTTACCATGGGATGTA
126 TAC-AGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCA
*** * * * * * *
33720003 TATAAAACTTCTTGTGTTTTATGATATTTTTATAATTTCATTTTTAAATAGTAAAATTCGAATTT
190 TAGCGAAGTTCTCGTGTCTTATG--ATTTTT-TAATTTCATTTTTAAATATTAAAACTCAAATTT
* ** * *
33720068 CGAG-GCAACGTTAGTTACAGAATCAAAGATA
252 TGAGCG-AA-GTCCGTTACGGAATTAAAGATA
* * * * * *
33720099 AAGTATAAATTTTT-AGTGGTTAAAATAGAAATTTATCATGTGATGCATAGCATAGTTCTCGCGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGT
* * *
33720163 TTTATGATTTTTTTTAATTTCATTTTTAAGTATTAAAATTCAAATTT-TGAGGCCAA-GTCGATT
66 TTTATGA-TTTTTTTAATTTTATTTTTAAATATTAAAATTC-AATTTCT-AGG-CAACGTCGGTT
* * *
33720226 ACAGAATCAAAGATAAAATATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATG
127 ACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATA
* * * * *
33720291 GCGAAGTTCTCGTCTGTTATGATTGTTTTCAATTTCATTTTTGAATATTGAAACTCGAATTTTGA
192 GCGAAGTTCTCGTGTCTTATGATT-TTTT-AATTTCATTTTTAAATATTAAAACTCAAATTTTGA
* * *
33720356 GGTGAAG-CCTGTTACGGAATGAAAGAAA
255 -GCGAAGTCC-GTTACGGAATTAAAGATA
* * * * * * * **
33720384 AAATATAAATTTTTAAGTGGTTAAAATGAAAATTTACAATGTGATGAATGGAAAACTAAAT-GTG
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACT-TCTCGTG
** * * * * * *
33720448 TTTTGCG-TTTTTTTAATTTTATTTTTAAATGTTAAAATTTGAAATTCGAGGCAACCTCGATTAC
65 TTTTATGATTTTTTTAATTTTATTTTTAAATATTAAAA-TTCAATTTCTAGGCAACGTCGGTTAC
* * * * * *
33720512 AGAATTAAAGATAAAATATAAATTTTTAAGAGGTTTAGATGGAAGTTTATCATGTGATGCATAGC
129 AGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGC
* * * * * * * **
33720577 AAATTTGTCGTGTTTTATGATTTTTTAAATTTCATTTTTAAATATTAAAATTCGAATGTCAAG-G
194 GAAGTTCTCGTGTCTTATGATTTTTT-AATTTCATTTTTAAATATTAAAACTCAAATTTTGAGCG
* ** *
33720641 TAAAGTCAGTTACAAAATCAAAGATA
258 --AAGTCCGTTACGGAATTAAAGATA
* * ** * * *
33720667 AAATATAAGTTTTTAAGAGGTTAAAATAAAAATTTACAATGTGATGCATAGCGAAGTTCTCGTGT
1 AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGT
* * * *
33720732 CTTATAATTGTTTTTAA-TATATTTTTAAATATTGAAATT
66 TTTATGATT-TTTTTAATTTTATTTTTAAATATTAAAATT
33720771 GGCAAACTCT
Statistics
Matches: 5856, Mismatches: 1158, Indels: 810
0.75 0.15 0.10
Matches are distributed among these distances:
252 2 0.00
253 5 0.00
254 5 0.00
255 1 0.00
256 34 0.01
257 137 0.02
258 28 0.00
259 17 0.00
260 46 0.01
261 37 0.01
262 41 0.01
263 36 0.01
264 33 0.01
265 27 0.00
266 7 0.00
267 7 0.00
268 28 0.00
269 21 0.00
270 3 0.00
271 14 0.00
272 25 0.00
273 13 0.00
274 16 0.00
275 21 0.00
276 130 0.02
277 113 0.02
278 72 0.01
279 224 0.04
280 70 0.01
281 95 0.02
282 134 0.02
283 558 0.10
284 670 0.11
285 1665 0.28
286 564 0.10
287 352 0.06
288 238 0.04
289 127 0.02
290 7 0.00
291 186 0.03
292 45 0.01
293 2 0.00
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (281 bp):
AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCTCGTGT
TTTATGATTTTTTTAATTTTATTTTTAAATATTAAAATTCAATTTCTAGGCAACGTCGGTTACAG
AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACCATGTGATGCATAGCGA
AGTTCTCGTGTCTTATGATTTTTTAATTTCATTTTTAAATATTAAAACTCAAATTTTGAGCGAAG
TCCGTTACGGAATTAAAGATA
Found at i:33717017 original size:141 final size:139
Alignment explanation
Indices: 33716669--33720770 Score: 1648
Period size: 142 Copynumber: 29.2 Consensus size: 139
33716659 AAAATGGATT
* * * *
33716669 TTTTTTAAATTTCACTTTTAAATATTAAAATTTGAATTTCATGGTCAAATCAATTATAGAATCAA
1 TTTTTT-AATTTCATTTTTAAATATTAAAATTTGAATTTCA--GCCAAGTCAATTACAGAATCAA
* * * *
33716734 ATATAAAGTATAAATTTTTAAGAGGTTAAAGTGGAAATTTACCATGTGTTACATAGAAAACTTCT
63 AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CATGTGATACATAGAAAACTACT
* * *
33716799 TGTGTTTTATGCC
127 CGTATTTTATGAC
** * *
33716812 TTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCAAGGTAACGTCGATTACAGAGTCAAA
1 TTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTC-AGCCAA-GTCAATTACAGAATCAAA
* * * ** * *
33716877 GATAGAGTATAAATTTTAAAGAGGCTAAAATGGAAATTTATCATGTGATGTATAGCAAGCTACTC
64 GATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CATGTGATACATAGAAAACTACTC
33716942 GTATTTTATGAC
128 GTATTTTATGAC
* * *
33716954 -TTTTTAATTTGATTTTTAAATATTAAAATTCGAATTTCGAGCCCAAGTCAATTAGAGAATCAAA
1 TTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTC-AG-CCAAGTCAATTACAGAATCAAA
** * *
33717018 GATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATACATAGCGAAGTTCTC
64 GATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTAC-ATGTGATACATAGAAAACTACTC
* *
33717083 GTGTCTTATGA-
128 GTATTTTATGAC
* * * ** * * * ** * *
33717094 TTGTTTTCAATTT-A-TTTTAAGATTTTGAAACTCAAACTTTGAGGCAAACTCCGTTACGGAATT
1 TT-TTTT-AATTTCATTTTTAA-ATATTAAAATTTGAA-TTTCA-GCCAAGTCAATTACAGAATC
* * * * ** *
33717157 AAAGATAAAGTGTAAATTTTTAAGTGGTTAAAAT-----TCT-C-T-TGTTTTAT-G---AGT-C
61 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACATGTGATACATAGAAAACTAC
* * *
33717209 T-TTATAATT-TCA-
126 TCGTAT-TTTATGAC
* * * * * * * * * *
33717221 TTTTTAAATATTAAATTTTGAAT-TTCAAGGCAACGTTG-GTTACAG--AA-TCAAATATA-AAG
1 TTTTTTAAT-TTCATTTTTAAATATT-AA---AA-TTTGAATTTCAGCCAAGTCAATTACAGAAT
* ** * ** * * * * ** *
33717280 CATA-A-AATTTTTAAGA-GCTTAAAA--------TGGAAATTTACCATATGGTGCATAGCGAAG
60 CAAAGATAAAGTATAA-ATTTTTAAGAGGTTAAAATGGAAATTTA-CATGTGATACATAGAAAAC
* * * *
33717334 TTCTC-AAGTCTTATGAT
123 TACTCGTA-TTTTATGAC
* * * ** * * * *
33717351 TCTTTTTAATTTCATTTTTAAGTATTGAAACTCAAATTTTGAGTCAAAGT-ACGTTAC-GAAATT
1 T-TTTTTAATTTCATTTTTAAATATTAAAATTTGAA-TTTCAG-CCAAGTCA-ATTACAG-AATC
* * * * *
33717414 ATAGATAAAGTATAAACTTTTAAGAGGTTAAAATGGAAATTTACCATGAGATGCATAGAAAACCA
61 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CATGTGATACATAGAAAACTA
* * **
33717479 CTTGTGTTTTGCG-C
125 CTCGTATTTTATGAC
* * ** * * ** *
33717493 TTTTTTAAATTTTATTTTAAAATATTAAAATTCAAATTTTGAGGC-AGCTTCGGTTACAGAATAA
1 TTTTTT-AATTTCATTTTTAAATATTAAAATTTGAA-TTTCAGCCAAG--TCAATTACAGAATCA
* * * *
33717557 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATAGAAATTTATCATGTGATACATTGCAAACTTC
62 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CATGTGATACATAGAAAACTAC
* *
33717622 TCGTACTTTATGATTTA
126 TCGTATTTTATGA---C
** *
33717639 TTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCGAGGCCAAGTCGGTTATAGAATCAAA
1 TTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTC-A-GCCAAGTCAATTACAGAATCAAA
* * * *
33717704 GATAAAGTATTAATTTTTAAGAGGTTAAAATAGAAATTTACAATGTGATTCATAGAGAAA-TTCT
64 GATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTAC-ATGTGATACATAGA-AAACTACT
* * *
33717768 GGTGTCTTATGA-
127 CGTATTTTATGAC
* * * * * * * ** *
33717780 TTTTTTAATTT-ATTTTTAAATTTTGAAACTCGAATTTTGAGGCGAACTCCGTTACGGAA--AAA
1 TTTTTTAATTTCATTTTTAAATATTAAAATTTGAA-TTTCA-GCCAAGTCAATTACAGAATCAAA
* ** * * ** * * * **
33717842 GAT---GGA-AAA--TTTACCATGTGATGCATAGCATACTT-C-TCGTGATTTAT-G---A-T--
64 GATAAAGTATAAATTTTTAAGAGGTTA-AAAT-GGAAATTTACAT-GTGATACATAGAAAACTAC
33717892 T-GT-TTTTA--A-
126 TCGTATTTTATGAC
* * * **
33717901 TTTCATT--TTT-A------AATATTAAAA-TTCAATTTTCTAGGCAAAGTCGGTTA-AGAAATC
1 TTT-TTTAATTTCATTTTTAAATATTAAAATTTGAA-TTTC-A-GCCAAGTCAATTACAG-AATC
* * * * * * ** * *
33717955 AAAGACACAGTATAAATTTTTAAGAGATTAAGATGGAAATTTACAATGTGTTGCATAGCGAAGTT
61 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTAC-ATGTGATACATAGAAAACTA
* *** * *
33718020 CTAGTGCCTTGTGAA
125 CTCGTATTTTATGAC
* * * ** * * * * * *
33718035 TCTTTTTAATTTCTTTTTTAAATATTGAAACTCAAATTTTGAGTTCAAGTCCATTACGGAATTAT
1 T-TTTTTAATTTCATTTTTAAATATTAAAATTTGAA-TTTCAG-CCAAGTCAATTACAGAATCAA
* * * * * *
33718100 ATATAAAGTATAAACTTTTAAGAGGTTAAAATGAAAACTTACCATGTGATGCATAGAAAACTAAT
63 AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CATGTGATACATAGAAAACTACT
* * **
33718165 TGTGTTTTCCG-C
127 CGTATTTTATGAC
* * * * * * * *
33718177 TTTTTGTAATTTTATTTTTAAATATTAAAATTCGAGTTTTAAGGCAACGTTAGTTACAAAATCAA
1 TTTTT-TAATTTCATTTTTAAATATTAAAATTTGA-ATTTCAGCCAA-GTCAATTACAGAATCAA
* * ** ** *
33718242 AGATAAAGTATAAATTTTTAAGAGGTTAAAAAGGAAATTTACCATGTGATGCATAGTGATGTTCT
63 AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CATGTGATACATAGAAAACTACT
* * *
33718307 CGTGTCTTATGAA
127 CGTATTTTATGAC
* * * * ** * * *
33718320 TCTTTTTAATTTCATTCTTAAATATTGAAACTCGAATTTTGGGGCAAAGTTC-GTTAC-GAAATT
1 T-TTTTTAATTTCATTTTTAAATATTAAAATTTGAA-TTT-CAGCCAAG-TCAATTACAG-AATC
* * * * *
33718383 ATAGATAAAGTATATATTTTTAAGAGGTTAAAATAGAAATTTACCATGTGATGCATAGAAAACTT
61 AAAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CATGTGATACATAGAAAACTA
* * *
33718448 CTTGTGTTCTATG-C
125 CTCGTATTTTATGAC
* * * *
33718462 TTTTTTTTATTTCATTTTTAAATTATTAAAATTCGAATTTCAAGGCAATGTCGATTACAGAATCA
1 -TTTTTTAATTTCATTTTTAAA-TATTAAAATTTGAATTTC-AGCCAA-GTCAATTACAGAATCA
* * * * * * * *
33718527 AAGATAAAGTATAAATTTTAAAGAGGCTAAAATAGAAATTTATCATATGATGCATAGCAAGCTTC
62 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CATGTGATACATAGAAAACTAC
*
33718592 TCGTGTTTTATGA-
126 TCGTATTTTATGAC
* * * * * ***
33718605 -TTTTTAATTTGATTTTTAAATATTAAAATTCTAAATATAAGGCAACGTTGGTTACAGAATCAAA
1 TTTTTTAATTTCATTTTTAAATATTAAAATT-TGAATTTCAGCCAA-GTCAATTACAGAATCAAA
* * * * ** * *
33718669 GATAAAGTACAAATTTTTAAGAGGTTAAAATGAAAATTTATAATGTGATGCATAGCGAAGTTCTC
64 GATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CATGTGATACATAGAAAACTACTC
*** *
33718734 GTGGCTTATGAT
128 GTATTTTATGAC
* * * * * * * ** * *
33718746 TGTTTTTAATTT-A-TTTTAAGATTTTGAAACTCGAATTCTGAGGCAAACTCCGTTACGGAATTA
1 T-TTTTTAATTTCATTTTTAA-ATATTAAAATTTGAATT-TCA-GCCAAGTCAATTACAGAATCA
* * * *
33718809 AAGATAAAGTATAAATTTTTAAGTGGTTAAAATTGAAATTTACCATGTGATGCATAGAAAACTTC
62 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CATGTGATACATAGAAAACTAC
* * *
33718874 TCATGTTTTATGAT
126 TCGTATTTTATGAC
* * * * * *** *
33718888 TTTTTATAATATCATTTTAAAATTTTAAAATTCGAATTTCGAGGCAATGTCGGCTACAGAATGAA
1 TTTTT-TAATTTCATTTTTAAATATTAAAATTTGAATTTC-AGCCAA-GTCAATTACAGAATCAA
* * * * * *
33718953 ATATAAAGTATAAATTTTGAAGTGGTTAAAATGGAAATTTACCATGTGATGCATAGCAAACTTCT
63 AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CATGTGATACATAGAAAACTACT
*
33719018 CGTGA-TTTATGAT
127 CGT-ATTTTATGAC
* * **
33719031 TTTTTTAATTTCATTTTTAAATATTAAAATTTGATTTTCTAAGCGAAGTCGGTTACAGAATCAAA
1 TTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTC--AGCCAAGTCAATTACAGAATCAAA
* * * *
33719096 GATTCAA-TATAAATTTTTAAGAGGTTAATATGGAAATTTACAATGTGATGCATAGTGAAGTACT
64 GA-TAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTAC-ATGTGATACATA--GAA-AACT
* * * * * *
33719160 TCTTGTGTCTTATTAA
124 ACTCGTATTTTATGAC
* * * ** * * **
33719176 TCTTTTTAATTTCATTTTTAAATATTGATACTCAAATTTCGAGGCGAAGCCCGTTACAGAATCAA
1 T-TTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTC-A-GCCAAGTCAATTACAGAATCAA
* * * * *
33719241 AGATAAAGTATAAATTTTTAAGAGGTTAAATTAGAAATTTACCATGTGATGCGTAGAAAACTAAT
63 AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CATGTGATACATAGAAAACTACT
* * **
33719306 TGTGTTTTGCG-C
127 CGTATTTTATGAC
* * * * * **
33719318 TTTTTTTAATTTTATTTTTAAATATTAAAATTCGAGTTTTAAGGCAACGTCGGTTACA-AAGTCA
1 -TTTTTTAATTTCATTTTTAAATATTAAAATTTGA-ATTTCAGCCAA-GTCAATTACAGAA-TCA
* * * * * * ** ** *
33719382 AAGATAGAGTATAAGTTTTTAAGAGGCTAGAAA-GGAAGTTTGCCATGTGATGCATAGCGATGTT
62 AAGATAAAGTATAAATTTTTAAGAGGTTA-AAATGGAAATTT-ACATGTGATACATAGAAAACTA
* * *
33719446 CTCGTGTCTTATGAG
125 CTCGTATTTTATGAC
* * * ** * * *
33719461 TCTTTTTAATTTCATTTTTAAATATTGAAACTCGAATTGTGGGGCAAAGTTC-GTTACAGAATTA
1 T-TTTTTAATTTCATTTTTAAATATTAAAATTTGAATT-T-CAGCCAAG-TCAATTACAGAATCA
* * * * * *
33719525 TAGATAAAGTATATATTTTTAAGAGGTTAAAATGAAAATTTACCATGTGATGCGTAGAAAACTTC
62 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CATGTGATACATAGAAAACTAC
* *
33719590 TTGTGTTTTATG-C
126 TCGTATTTTATGAC
** * * **
33719603 TTTTTTTTAATTTCATTTTTAAATATTAAAATTCAAATTTGAAGGCAACGTCGGTTACAGAATCA
1 --TTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTT-CAGCCAA-GTCAATTACAGAATCA
* * * * * * *
33719668 AAGATAAAGTATAAATTTTAAAGATGTTAAAATAGAAATTTATCATGTGATGCATAGCAAGCTTC
62 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CATGTGATACATAGAAAACTAC
* *
33719733 TCGTGTTATATGA-
126 TCGTATTTTATGAC
* * * * * *
33719746 TTTTTTAATTTGATTTTTAAATATTAAAACTCGAATTTCGAGGCCAAGTTAGTTAGAGAATCAAA
1 TTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTC-A-GCCAAGTCAATTACAGAATCAAA
* * * * * ** * *
33719811 GATAGAA-TATAATTTTTTAATATGTTAAAATGGAAATTTATAATGTGATGCATAGCGAAGTTCT
64 GATA-AAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CATGTGATACATAGAAAACTACT
*** *
33719875 CGTGCCTTATGAT
127 CGTATTTTATGAC
* * * * * * * ** *
33719888 TGTTTTTAATTT-ATTTTTAGATTTTGAAACTCGAATTTTGAGGCGAA--CTGTTACTA-AATTA
1 T-TTTTTAATTTCATTTTTAAATATTAAAATTTGAA-TTTCA-GCCAAGTCAATTAC-AGAATCA
* * ** * *
33719949 AAGATAAAGTATAAATTTTTAAGTGGTTAAAATGGAAATTTACCATGGGATGTATATAAAACTTC
62 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CATGTGATACATAGAAAACTAC
* * *
33720014 TTGTGTTTTATGATA
126 TCGTATTTTATGA-C
* * * * *
33720029 TTTTTATAATTTCATTTTTAAATAGTAAAATTCGAATTTCGAGGCAACGTTAGTTACAGAATCAA
1 TTTTT-TAATTTCATTTTTAAATATTAAAATTTGAATTTC-AGCCAA-GTCAATTACAGAATCAA
* * * * * * *
33720094 AGATAAAGTATAAATTTTT-AGTGGTTAAAATAGAAATTTATCATGTGATGCATAGCATAGTTCT
63 AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CATGTGATACATAGAAAACTACT
** *
33720158 CGCGTTTTATGATT
127 CGTATTTTATGA-C
* ** * *
33720172 TTTTTTAATTTCATTTTTAAGTATTAAAATTCAAATTTTGAGGCCAAGTCGATTACAGAATCAAA
1 TTTTTTAATTTCATTTTTAAATATTAAAATTTGAA-TTTCA-GCCAAGTCAATTACAGAATCAAA
* * * ** * *
33720237 GATAAAATATAAATTTTTAAGAGGTTAAAATGGAAATTTACAATGTGATGCATGGCGAAGTTCTC
64 GATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTAC-ATGTGATACATAGAAAACTACTC
* *
33720302 GTCTGTTATGA-
128 GTATTTTATGAC
* * * * * ** * ** * *
33720313 TTGTTTTCAATTTCATTTTTGAATATTGAAACTCGAATTTTGAGGTGAAGCCTGTTACGGAATGA
1 TT-TTTT-AATTTCATTTTTAAATATTAAAATTTGAA-TTTCA-GCCAAGTCAATTACAGAATCA
* * * * *
33720378 AAGAAAAAATATAAATTTTTAAGTGGTTAAAATGAAAATTTACAATGTGATGA-ATGGAAAACTA
62 AAGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTAC-ATGTGAT-ACATAGAAAACT-
* * ** *
33720442 AAT-GTGTTTTGCG-T
124 ACTCGTATTTTATGAC
* * * * * * *
33720456 TTTTTTAATTTTATTTTTAAATGTTAAAATTTGAAATTCGAGGCAACCTCGATTACAGAATTAAA
1 TTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTC-AGCCAA-GTCAATTACAGAATCAAA
* * * * * * * **
33720521 GATAAAATATAAATTTTTAAGAGGTTTAGATGGAAGTTTATCATGTGATGCATAGCAAATTTGTC
64 GATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTA-CATGTGATACATAGAAAACTACTC
*
33720586 GTGTTTTATGA-
128 GTATTTTATGAC
* * ** * *
33720597 TTTTTTAAATTTCATTTTTAAATATTAAAATTCGAATGTCAAGGTAAAGTCAGTTACAAAATCAA
1 TTTTTT-AATTTCATTTTTAAATATTAAAATTTGAATTTC-A-GCCAAGTCAATTACAGAATCAA
* * ** * ** * *
33720662 AGATAAAATATAAGTTTTTAAGAGGTTAAAATAAAAATTTACAATGTGATGCATAGCGAAGTTCT
63 AGATAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTAC-ATGTGATACATAGAAAACTACT
* * * *
33720727 CGTGTCTTATAAT
127 CGTATTTTATGAC
* *
33720740 TGTTTTTAATAT-ATTTTTAAATATTGAAATT
1 T-TTTTTAATTTCATTTTTAAATATTAAAATT
33720771 GGCAAACTCT
Statistics
Matches: 3064, Mismatches: 681, Indels: 429
0.73 0.16 0.10
Matches are distributed among these distances:
113 8 0.00
114 23 0.01
116 5 0.00
119 4 0.00
120 12 0.00
121 8 0.00
122 26 0.01
123 13 0.00
124 7 0.00
125 8 0.00
126 11 0.00
127 18 0.01
128 19 0.01
129 10 0.00
130 15 0.00
131 17 0.01
132 20 0.01
133 14 0.00
134 12 0.00
135 15 0.00
136 4 0.00
137 2 0.00
138 6 0.00
139 2 0.00
140 211 0.07
141 421 0.14
142 943 0.31
143 904 0.30
144 75 0.02
145 121 0.04
146 107 0.03
147 3 0.00
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.39
Consensus pattern (139 bp):
TTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTCAGCCAAGTCAATTACAGAATCAAAGA
TAAAGTATAAATTTTTAAGAGGTTAAAATGGAAATTTACATGTGATACATAGAAAACTACTCGTA
TTTTATGAC
Found at i:33717778 original size:145 final size:141
Alignment explanation
Indices: 33717186--33717800 Score: 546
Period size: 145 Copynumber: 4.3 Consensus size: 141
33717176 TTAAGTGGTT
* * * * * * ** *
33717186 AAAATTCTCTTGTTTTATGAGTCTTTATAATTTCATTTTTAAATATTAAATTTTGAATTTCAAGG
1 AAAATTCTCGTGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAATTCAAATTTCGAGG
* * * * *
33717251 CAACGTTGGTTACAGAATCAAATATAAAGCATAAAATTTTTAAGAGCTTAAAATGGAAATTTACC
66 CAA-GTCGGTTACAGAATCAAAGATAAAGTAT-AAATTTTTAAGAGGTTAAAATAGAAATTTACC
* *
33717316 ATATGGTGCATAG
129 ATGTGATGCATAG
* * ** * * * * *
33717329 CGAAGTTCTCAAGTCTTATGATTCTTTTTAATTTCATTTTTAAGTATTGAAACTCAAATTTTGAG
1 -AAAATTCTCGTGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAATTCAAATTTCGAG
* * * * *
33717394 TCAAAGTAC-GTTAC-GAAATTATAGATAAAGTATAAACTTTTAAGAGGTTAAAATGGAAATTTA
65 GC-AAGT-CGGTTACAG-AATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATAGAAATTTA
*
33717457 CCATGAGATGCATAG
127 CCATGTGATGCATAG
** * ** * * * *
33717472 AAAACCACTTGTGT-TT-TGCGCTTTTTTAAATTTTATTTTAAAATATTAAAATTCAAATTTTGA
1 AAAA-TTCTCGTGTCTTATG-ATTTTTTTTAATTTCATTTTTAAATATTAAAATTCAAATTTCGA
*
33717535 GGC-AGCTTCGGTTACAGAATAAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATAGAAATTTA
64 GGCAAG--TCGGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATAGAAATTTA
* * *
33717599 TCATGTGATACATTG
127 CCATGTGATGCATAG
* * **
33717614 CAAACTTCTCGT-ACTTTATGATTTATTTTTTAATTTCATTTTTAAATATTAAAATTTGAATTTC
1 -AAAATTCTCGTGTC-TTATGA-TT-TTTTTTAATTTCATTTTTAAATATTAAAATTCAAATTTC
* *
33717678 GAGGCCAAGTCGGTTATAGAATCAAAGATAAAGTATTAATTTTTAAGAGGTTAAAATAGAAATTT
62 GAGG-CAAGTCGGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATAGAAATTT
* *
33717743 ACAATGTGATTCATAG
126 ACCATGTGATGCATAG
*
33717759 AGAAATTCTGGTGTCTTATGA--TTTTTTAATTT-ATTTTTAAAT
1 A-AAATTCTCGTGTCTTATGATTTTTTTTAATTTCATTTTTAAAT
33717801 TTTGAAACTC
Statistics
Matches: 378, Mismatches: 74, Indels: 42
0.77 0.15 0.09
Matches are distributed among these distances:
140 12 0.03
141 14 0.04
142 105 0.28
143 51 0.13
144 74 0.20
145 118 0.31
146 2 0.01
147 2 0.01
ACGTcount: A:0.37, C:0.09, G:0.14, T:0.40
Consensus pattern (141 bp):
AAAATTCTCGTGTCTTATGATTTTTTTTAATTTCATTTTTAAATATTAAAATTCAAATTTCGAGG
CAAGTCGGTTACAGAATCAAAGATAAAGTATAAATTTTTAAGAGGTTAAAATAGAAATTTACCAT
GTGATGCATAG
Found at i:33720867 original size:32 final size:32
Alignment explanation
Indices: 33720830--33720926 Score: 80
Period size: 32 Copynumber: 3.2 Consensus size: 32
33720820 CATATTTAAA
33720830 TATGAAAACTCGAATTTTAAGGTAAAATCAAT
1 TATGAAAACTCGAATTTTAAGGTAAAATCAAT
** ** * * * *
33720862 TATG-AAA-TTAAAGATTCA--T--ATTTAAA
1 TATGAAAACTCGAATTTTAAGGTAAAATCAAT
33720888 TATGAAAACTCGAATTTTAAGGTAAAATCAAT
1 TATGAAAACTCGAATTTTAAGGTAAAATCAAT
33720920 TATGAAA
1 TATGAAA
33720927 TTAAAGATAA
Statistics
Matches: 43, Mismatches: 16, Indels: 12
0.61 0.23 0.17
Matches are distributed among these distances:
26 8 0.19
27 3 0.07
28 7 0.16
30 7 0.16
31 3 0.07
32 15 0.35
ACGTcount: A:0.48, C:0.07, G:0.11, T:0.33
Consensus pattern (32 bp):
TATGAAAACTCGAATTTTAAGGTAAAATCAAT
Found at i:33720886 original size:58 final size:58
Alignment explanation
Indices: 33720817--33720934 Score: 236
Period size: 58 Copynumber: 2.0 Consensus size: 58
33720807 ATTTTTATAA
33720817 ATTCATATTTAAATATGAAAACTCGAATTTTAAGGTAAAATCAATTATGAAATTAAAG
1 ATTCATATTTAAATATGAAAACTCGAATTTTAAGGTAAAATCAATTATGAAATTAAAG
33720875 ATTCATATTTAAATATGAAAACTCGAATTTTAAGGTAAAATCAATTATGAAATTAAAG
1 ATTCATATTTAAATATGAAAACTCGAATTTTAAGGTAAAATCAATTATGAAATTAAAG
33720933 AT
1 AT
33720935 AAAATATAAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.48, C:0.07, G:0.10, T:0.35
Consensus pattern (58 bp):
ATTCATATTTAAATATGAAAACTCGAATTTTAAGGTAAAATCAATTATGAAATTAAAG
Found at i:33722621 original size:15 final size:15
Alignment explanation
Indices: 33722601--33722630 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
33722591 GTATCCATCT
33722601 CTCCTCCTCCTCGTC
1 CTCCTCCTCCTCGTC
33722616 CTCCTCCTCCTCGTC
1 CTCCTCCTCCTCGTC
33722631 ATCATCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.00, C:0.60, G:0.07, T:0.33
Consensus pattern (15 bp):
CTCCTCCTCCTCGTC
Found at i:33727364 original size:23 final size:25
Alignment explanation
Indices: 33727329--33727375 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 25
33727319 TTTAGGTGAT
33727329 TTAACAAATAATATAAAT-TTAAATG
1 TTAACAAATAATA-AAATATTAAATG
33727354 TTAA-AAA-AATAAAATATTAAAT
1 TTAACAAATAATAAAATATTAAAT
33727376 AAAAAATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 4 0.19
23 10 0.48
24 3 0.14
25 4 0.19
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (25 bp):
TTAACAAATAATAAAATATTAAATG
Found at i:33737467 original size:50 final size:51
Alignment explanation
Indices: 33737364--33737606 Score: 253
Period size: 50 Copynumber: 4.7 Consensus size: 51
33737354 GGGAATGAGA
* **
33737364 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAGATTATGAGAGGC
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGC---ACCGAG---ATGAGAGGC
* *
33737421 -CCCATGTAAGACCATGTCTGGAACATGGCGTTGGCATCGAGATGAGAGG-
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGC
* *
33737470 TCCCATGCAATACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTC
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG-C
* * * * *
33737522 TCCCA--TAAGACCATGTCTGGGACATGGTGTGGGAACCGATATGAGA-AC
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGC
* * *
33737570 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
33737607 ATACAGAAAA
Statistics
Matches: 161, Mismatches: 20, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
48 6 0.04
50 112 0.70
52 5 0.03
53 5 0.03
56 33 0.20
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.23
Consensus pattern (51 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGC
Found at i:33737871 original size:12 final size:12
Alignment explanation
Indices: 33737854--33737892 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
33737844 ATGAGTTATA
33737854 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
33737866 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
33737878 TAAGTGAGTAAG
1 TAAGTAAGCAAG
33737890 TAA
1 TAA
33737893 AGAAGCGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:33741027 original size:9 final size:9
Alignment explanation
Indices: 33741013--33741040 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
33741003 GGCCCCGTTG
33741013 GAATTGAAA
1 GAATTGAAA
33741022 GAATTGAAA
1 GAATTGAAA
33741031 GAATTGAAA
1 GAATTGAAA
33741040 G
1 G
33741041 CTCAGTTGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.25, T:0.21
Consensus pattern (9 bp):
GAATTGAAA
Found at i:33751592 original size:20 final size:20
Alignment explanation
Indices: 33751567--33751613 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
33751557 CCTTAGACAA
33751567 CGAAAACCCAAGCGTTTCAT
1 CGAAAACCCAAGCGTTTCAT
33751587 CGAAAACCCAAGCGTTTCAT
1 CGAAAACCCAAGCGTTTCAT
33751607 CGAAAAC
1 CGAAAAC
33751614 TCGAAAAAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.38, C:0.30, G:0.15, T:0.17
Consensus pattern (20 bp):
CGAAAACCCAAGCGTTTCAT
Found at i:33754788 original size:23 final size:23
Alignment explanation
Indices: 33754673--33754975 Score: 192
Period size: 23 Copynumber: 12.7 Consensus size: 23
33754663 GTACAGCTCT
* * *
33754673 TATACATCAAAGTGGACAGCATT
1 TATACACCAAATTGGACAGCATA
* * *
33754696 TATACACTAATTTGGGCAGCATA
1 TATACACCAAATTGGACAGCATA
* * * * *
33754719 TATATATCAAATTGAACAACATTTTT
1 TATACACCAAATTGGACAGCA---TA
* * *
33754745 TTTACACCAAAATTTGACAGCAAA
1 TATACACC-AAATTGGACAGCATA
*
33754769 TATACACCAAATTGGGCAGCATATA
1 TATACACCAAATTGGACAGC--ATA
* * * *
33754794 TATATATCAAATTGTACAGCATT
1 TATACACCAAATTGGACAGCATA
* *
33754817 TTTACATCAAAATTGGACAGCATA
1 TATACA-CCAAATTGGACAGCATA
* * * *
33754841 TAGACACCAAATTGGGCGGCATT
1 TATACACCAAATTGGACAGCATA
* * *
33754864 TTTACACAAAAAATTGGATAGCATA
1 TATACAC--CAAATTGGACAGCATA
* *
33754889 TAGACACCAAATTGGATAGCATA
1 TATACACCAAATTGGACAGCATA
* *
33754912 TAGACACCAAATTGGGCAGCATA
1 TATACACCAAATTGGACAGCATA
* * *
33754935 TAGACACCAAATTGGGCAGCATT
1 TATACACCAAATTGGACAGCATA
*
33754958 TTTACACCAAAATTGGAC
1 TATACACC-AAATTGGAC
33754976 TTGAATCGAA
Statistics
Matches: 211, Mismatches: 59, Indels: 19
0.73 0.20 0.07
Matches are distributed among these distances:
23 129 0.61
24 32 0.15
25 34 0.16
26 6 0.03
27 10 0.05
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (23 bp):
TATACACCAAATTGGACAGCATA
Found at i:33754848 original size:72 final size:70
Alignment explanation
Indices: 33754685--33754975 Score: 280
Period size: 72 Copynumber: 4.1 Consensus size: 70
33754675 TACATCAAAG
* * * * * * *
33754685 TGGACAGCATTTATACACTAATTTGGGCAGCATATATATATCAAATTGAACAACATTTTTTTTAC
1 TGGACAGCATATAGACACCAAATTGGGCAGCATATATACATCAAATTGGACAGCA---TTTTTAC
33754750 ACCAAAAT
63 ACCAAAAT
* * * * *
33754758 TTGACAGCAAATATACACCAAATTGGGCAGCATATATATATATCAAATTGTACAGCATTTTTACA
1 TGGACAGCATATAGACACCAAATTGGGCAGC--ATATATACATCAAATTGGACAGCATTTTTACA
*
33754823 TCAAAAT
64 CCAAAAT
* * * * * **
33754830 TGGACAGCATATAGACACCAAATTGGGCGGCATTTTTACA-CAAAAAATTGGATAGCATATAGAC
1 TGGACAGCATATAGACACCAAATTGGGCAGCATATATACATC---AAATTGGACAGCATTTTTAC
33754894 ACC-AAAT
63 ACCAAAAT
* * * *
33754901 TGGATAGCATATAGACACCAAATTGGGCAGCATATAGACACCAAATTGGGCAGCATTTTTACACC
1 TGGACAGCATATAGACACCAAATTGGGCAGCATATATACATCAAATTGGACAGCATTTTTACACC
33754966 AAAAT
66 AAAAT
33754971 TGGAC
1 TGGAC
33754976 TTGAATCGAA
Statistics
Matches: 179, Mismatches: 32, Indels: 17
0.79 0.14 0.07
Matches are distributed among these distances:
69 19 0.11
70 14 0.08
71 39 0.22
72 59 0.33
73 26 0.15
75 22 0.12
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (70 bp):
TGGACAGCATATAGACACCAAATTGGGCAGCATATATACATCAAATTGGACAGCATTTTTACACC
AAAAT
Found at i:33754965 original size:46 final size:46
Alignment explanation
Indices: 33754748--33754975 Score: 213
Period size: 48 Copynumber: 4.8 Consensus size: 46
33754738 CATTTTTTTT
* ** * * *
33754748 ACACCAAAATTTGACAGCAAATATACACCAAATTGGGCAGCATATATAT
1 ACACC-AAATTGGACAGCATTTTTACACCAAATTGGACAGC--ATATAG
* * * *
33754797 ATATCAAATTGTACAGCATTTTTACATCAAAATTGGACAGCATATAG
1 ACACCAAATTGGACAGCATTTTTACA-CCAAATTGGACAGCATATAG
* * * *
33754844 ACACCAAATTGGGCGGCATTTTTACACAAAAAATTGGATAGCATATAG
1 ACACCAAATTGGACAGCATTTTTACAC--CAAATTGGACAGCATATAG
* * ** *
33754892 ACACCAAATTGGATAGCATATAGACACCAAATTGGGCAGCATATAG
1 ACACCAAATTGGACAGCATTTTTACACCAAATTGGACAGCATATAG
*
33754938 ACACCAAATTGGGCAGCATTTTTACACCAAAATTGGAC
1 ACACCAAATTGGACAGCATTTTTACACC-AAATTGGAC
33754976 TTGAATCGAA
Statistics
Matches: 144, Mismatches: 31, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
46 40 0.28
47 34 0.24
48 55 0.38
49 15 0.10
ACGTcount: A:0.41, C:0.19, G:0.16, T:0.25
Consensus pattern (46 bp):
ACACCAAATTGGACAGCATTTTTACACCAAATTGGACAGCATATAG
Found at i:33755859 original size:42 final size:43
Alignment explanation
Indices: 33755809--33755906 Score: 164
Period size: 42 Copynumber: 2.3 Consensus size: 43
33755799 TCTCGGTATC
33755809 GCACACTTAGTGCCCATTATTCAACATCATCATTTTAATTT-T
1 GCACACTTAGTGCCCATTATTCAACATCATCATTTTAATTTCT
* *
33755851 GCACACTTAGTGCCTATTATTCAACATTATCATTTTAATTTCT
1 GCACACTTAGTGCCCATTATTCAACATCATCATTTTAATTTCT
33755894 -CACACTTAGTGCC
1 GCACACTTAGTGCC
33755907 GTTCATATAG
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
42 52 0.98
43 1 0.02
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (43 bp):
GCACACTTAGTGCCCATTATTCAACATCATCATTTTAATTTCT
Found at i:33756790 original size:20 final size:20
Alignment explanation
Indices: 33756767--33756804 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
33756757 GTGTTTTATT
33756767 TTATTATCATTATACTAACA
1 TTATTATCATTATACTAACA
* *
33756787 TTATTATTATTTTACTAA
1 TTATTATCATTATACTAA
33756805 GTTAACCTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.53
Consensus pattern (20 bp):
TTATTATCATTATACTAACA
Found at i:33765327 original size:48 final size:47
Alignment explanation
Indices: 33765172--33765328 Score: 188
Period size: 48 Copynumber: 3.3 Consensus size: 47
33765162 TGCACATCGT
* *
33765172 CACATATCACACACCGAAGCCATAGCCCAGCTATGGTCTTACACGGAAA
1 CACATAT--CACACCGATGCCATATCCCAGCTATGGTCTTACACGGAAA
* ** *
33765221 CACATATCACACTGATGCCATATCCCATATATGGTCTTACACGAAAA
1 CACATATCACACCGATGCCATATCCCAGCTATGGTCTTACACGGAAA
* * * *
33765268 TCACATATCACACCGATGCCATATCCTAGCTATGGTCTTATATGGAAG
1 -CACATATCACACCGATGCCATATCCCAGCTATGGTCTTACACGGAAA
33765316 CACATAGTCACAC
1 CACATA-TCACAC
33765329 TTTGACATGT
Statistics
Matches: 92, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
47 40 0.43
48 45 0.49
49 7 0.08
ACGTcount: A:0.34, C:0.29, G:0.14, T:0.23
Consensus pattern (47 bp):
CACATATCACACCGATGCCATATCCCAGCTATGGTCTTACACGGAAA
Found at i:33767511 original size:19 final size:20
Alignment explanation
Indices: 33767489--33767538 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
33767479 TTAAATAATA
*
33767489 TTAAGGTTTTT-AATAGGGT
1 TTAAGGTTTTTAAAAAGGGT
33767508 TTAAGGTTTTTCAAAAAGGGT
1 TTAAGGTTTTT-AAAAAGGGT
*
33767529 TCAAGGTTTT
1 TTAAGGTTTT
33767539 CGATTGTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 11 0.41
21 16 0.59
ACGTcount: A:0.28, C:0.04, G:0.24, T:0.44
Consensus pattern (20 bp):
TTAAGGTTTTTAAAAAGGGT
Found at i:33770499 original size:27 final size:27
Alignment explanation
Indices: 33770456--33770589 Score: 110
Period size: 27 Copynumber: 5.0 Consensus size: 27
33770446 CCGTCCAGGT
* * *
33770456 AGACT-ACCCTATTTTTATTGTCTTGGC
1 AGACTAACCC-ATGTTTATTGTCCTAGC
* * *
33770483 AGACTATCCCATGTTTACTGCCCTAGC
1 AGACTAACCCATGTTTATTGTCCTAGC
* *
33770510 AGACTAACCCACGTTTATTGTCCTAAC
1 AGACTAACCCATGTTTATTGTCCTAGC
* * ** *
33770537 GGACTATCCCATGTTTATCATCCTGGC
1 AGACTAACCCATGTTTATTGTCCTAGC
*
33770564 AAACTAACCCACT-TTTATTGTCCTAG
1 AGACTAACCCA-TGTTTATTGTCCTAG
33770590 TGGATTATCC
Statistics
Matches: 81, Mismatches: 24, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
27 77 0.95
28 4 0.05
ACGTcount: A:0.24, C:0.28, G:0.13, T:0.34
Consensus pattern (27 bp):
AGACTAACCCATGTTTATTGTCCTAGC
Found at i:33770542 original size:54 final size:53
Alignment explanation
Indices: 33770484--33770604 Score: 154
Period size: 54 Copynumber: 2.2 Consensus size: 53
33770474 TGTCTTGGCA
*
33770484 GACTATCCCATGTTTACTGC-CCTAGCAGACTAACCCACGTTTATTGTCCTAACG
1 GACTATCCCATGTTTA-T-CACCTAGCAAACTAACCCACGTTTATTGTCCTAACG
* * **
33770538 GACTATCCCATGTTTATCATCCTGGCAAACTAACCCACTTTTATTGTCCTAGTG
1 GACTATCCCATGTTTATCA-CCTAGCAAACTAACCCACGTTTATTGTCCTAACG
*
33770592 GATTATCCCATGT
1 GACTATCCCATGT
33770605 CTGTCGTCTT
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
52 1 0.02
53 1 0.02
54 57 0.97
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (53 bp):
GACTATCCCATGTTTATCACCTAGCAAACTAACCCACGTTTATTGTCCTAACG
Found at i:33789562 original size:22 final size:21
Alignment explanation
Indices: 33789537--33789579 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
33789527 TGATAAACTT
33789537 TAATATATA-ATTATATTATTTA
1 TAATATATATATTA-ATT-TTTA
*
33789559 TAATTTATATATTAATTTTTA
1 TAATATATATATTAATTTTTA
33789580 CCAACTTAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 4 0.21
22 11 0.58
23 4 0.21
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
TAATATATATATTAATTTTTA
Found at i:33791094 original size:18 final size:19
Alignment explanation
Indices: 33791071--33791111 Score: 66
Period size: 18 Copynumber: 2.2 Consensus size: 19
33791061 TTCTTGTTGA
33791071 AAAATAATTAAA-TATTAT
1 AAAATAATTAAATTATTAT
*
33791089 AAAATAATTAAATTATTTT
1 AAAATAATTAAATTATTAT
33791108 AAAA
1 AAAA
33791112 ATATGAACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAATAATTAAATTATTAT
Found at i:33794559 original size:18 final size:17
Alignment explanation
Indices: 33794536--33794570 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
33794526 AAAGCACAAC
33794536 CAAATTTACATCAAATTT
1 CAAATTTA-ATCAAATTT
*
33794554 CAAATTTATTCAAATTT
1 CAAATTTAATCAAATTT
33794571 TGAATTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (17 bp):
CAAATTTAATCAAATTT
Found at i:33794568 original size:17 final size:18
Alignment explanation
Indices: 33794536--33794584 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
33794526 AAAGCACAAC
*
33794536 CAAATTTACATCAAA-TTT
1 CAAATTTA-TTCAAATTTT
33794554 CAAATTTATTCAAATTTT
1 CAAATTTATTCAAATTTT
* *
33794572 GAATTTTATTCAA
1 CAAATTTATTCAA
33794585 TTTAGTCCCT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 5 0.19
18 22 0.81
ACGTcount: A:0.41, C:0.12, G:0.02, T:0.45
Consensus pattern (18 bp):
CAAATTTATTCAAATTTT
Found at i:33807579 original size:27 final size:30
Alignment explanation
Indices: 33807549--33807607 Score: 70
Period size: 30 Copynumber: 2.1 Consensus size: 30
33807539 AATCAAATTC
* *
33807549 AACTTAGAT-AAAAAAAT-TAA-AATAAAT
1 AACTAAGATCAAAAAAATAGAACAATAAAT
*
33807576 AACTAAGATCAATAAAATAGAACAATAAAT
1 AACTAAGATCAAAAAAATAGAACAATAAAT
33807606 AA
1 AA
33807608 AAAATTAGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
27 8 0.31
28 7 0.27
29 2 0.08
30 9 0.35
ACGTcount: A:0.66, C:0.07, G:0.05, T:0.22
Consensus pattern (30 bp):
AACTAAGATCAAAAAAATAGAACAATAAAT
Found at i:33808465 original size:50 final size:50
Alignment explanation
Indices: 33808331--33808576 Score: 276
Period size: 50 Copynumber: 4.8 Consensus size: 50
33808321 ATTTGAGTAA
* * *
33808331 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGGTTATA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA-G--ATG
* * * * *
33808387 AGAGGTCCCACGTAAGACTATGTTTGGGACATGGCGTTGGCATCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
*
33808437 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * *
33808487 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * *
33808537 AGAACTCCCATGTAAGACCATATTTGGGATATGGCATTGG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGG
33808577 TAGTACAAGA
Statistics
Matches: 165, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
50 125 0.76
52 1 0.01
53 2 0.01
56 37 0.22
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:33814635 original size:20 final size:22
Alignment explanation
Indices: 33814610--33814651 Score: 70
Period size: 20 Copynumber: 2.0 Consensus size: 22
33814600 AAGTTTCTCG
33814610 ATTCAATT-TATA-AACCAATT
1 ATTCAATTATATATAACCAATT
33814630 ATTCAATTATATATAACCAATT
1 ATTCAATTATATATAACCAATT
33814652 CATCAACCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 8 0.40
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.14, G:0.00, T:0.40
Consensus pattern (22 bp):
ATTCAATTATATATAACCAATT
Found at i:33816676 original size:15 final size:15
Alignment explanation
Indices: 33816658--33816687 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
33816648 TACATGTTTT
*
33816658 TATATATTATAGATA
1 TATACATTATAGATA
33816673 TATACATTATAGATA
1 TATACATTATAGATA
33816688 CAATAATAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.43
Consensus pattern (15 bp):
TATACATTATAGATA
Found at i:33818771 original size:25 final size:25
Alignment explanation
Indices: 33818743--33818794 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
33818733 TTCATTTATA
33818743 TTTCACCAGTCCCGTCTGTTTAAGT
1 TTTCACCAGTCCCGTCTGTTTAAGT
*
33818768 TTTCACCGGTCCCGTCTGTTTAAGT
1 TTTCACCAGTCCCGTCTGTTTAAGT
33818793 TT
1 TT
33818795 ACTGATTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.13, C:0.27, G:0.17, T:0.42
Consensus pattern (25 bp):
TTTCACCAGTCCCGTCTGTTTAAGT
Found at i:33820307 original size:38 final size:37
Alignment explanation
Indices: 33820257--33820440 Score: 140
Period size: 38 Copynumber: 4.7 Consensus size: 37
33820247 ATAGTATTAT
*
33820257 ATATTATG-ATTTTATTAAATTCATATAAGAATATTTA
1 ATATTAAGAATTTTATTAAATT-ATATAAGAATATTTA
**** *
33820294 ATATTAAGAATTTTATTAAATTATATATTTTTATTAAATT
1 ATATTAAGAATTTTATTAAATTATATAAGAATATT---TA
* * * *
33820334 ATATTTAATAATAATTATTTTAAATTATATTA-TATAGTATTA
1 ATA-TTAAGAAT--TT-TATTAAATTATATAAGAATA-T-TTA
*
33820376 TATATTATG-ATTTTATTAAATTCATATAAGAATATTTA
1 -ATATTAAGAATTTTATTAAATT-ATATAAGAATATTTA
33820414 ATATTAAGAATTTTATTAAATTATATA
1 ATATTAAGAATTTTATTAAATTATATA
33820441 TTTTTATTAA
Statistics
Matches: 115, Mismatches: 18, Indels: 28
0.71 0.11 0.17
Matches are distributed among these distances:
37 28 0.24
38 37 0.32
39 8 0.07
40 7 0.06
41 9 0.08
42 4 0.03
43 8 0.07
44 13 0.11
45 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (37 bp):
ATATTAAGAATTTTATTAAATTATATAAGAATATTTA
Found at i:33820325 original size:18 final size:18
Alignment explanation
Indices: 33820304--33820457 Score: 76
Period size: 18 Copynumber: 8.9 Consensus size: 18
33820294 ATATTAAGAA
33820304 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
33820322 TTTTATTAAA-T-TATA-
1 TTTTATTAAATTATATAT
* *
33820337 -TTTAAT-AATAAT-TAT
1 TTTTATTAAATTATATAT
* * *
33820352 TTTAAATTATATTATATAG
1 TTT-TATTAAATTATATAT
* * *
33820371 TATTA-TATATTAT-GA-
1 TTTTATTAAATTATATAT
*
33820386 TTTTATTAAATTCATATAA
1 TTTTATTAAATT-ATATAT
*** * *
33820405 GAATATTTAATATTA-AGAA
1 TTTTA-TTAA-ATTATATAT
33820424 TTTTATTAAATTATATAT
1 TTTTATTAAATTATATAT
33820442 TTTTATTAAATTATAT
1 TTTTATTAAATTATAT
33820458 TTAATAATAA
Statistics
Matches: 100, Mismatches: 22, Indels: 28
0.67 0.15 0.19
Matches are distributed among these distances:
13 2 0.02
14 7 0.07
15 5 0.05
16 12 0.12
17 17 0.17
18 38 0.38
19 11 0.11
20 5 0.05
21 3 0.03
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.55
Consensus pattern (18 bp):
TTTTATTAAATTATATAT
Found at i:33820378 original size:120 final size:120
Alignment explanation
Indices: 33820239--33820597 Score: 664
Period size: 120 Copynumber: 3.0 Consensus size: 120
33820229 ATTATTAATC
33820239 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
*
33820304 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATTTTAAAT
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
33820359 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
33820424 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
* * ** *
33820479 TATATTTTATAGTATTATATATTATGATATTAGAAAATTCATATAAGAATATTTAATATTAAAAA
1 TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
33820544 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAA
66 TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAA
33820598 ATATGATAAA
Statistics
Matches: 233, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 233 1.00
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (120 bp):
TATATTATATAGTATTATATATTATGATTTTATTAAATTCATATAAGAATATTTAATATTAAGAA
TTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAT
Found at i:33828733 original size:16 final size:16
Alignment explanation
Indices: 33828659--33828733 Score: 66
Period size: 17 Copynumber: 4.7 Consensus size: 16
33828649 ATAATATTAT
33828659 TTTAATAAATTTAATA
1 TTTAATAAATTTAATA
* *
33828675 TTAAATTTAATTTAATA
1 TTTAA-TAAATTTAATA
33828692 TTTATATAAA--TAATA
1 TTTA-ATAAATTTAATA
* *
33828707 TTTTATTAATTTAATA
1 TTTAATAAATTTAATA
33828723 -TTAATGAAATT
1 TTTAAT-AAATT
33828734 AATTCTAATC
Statistics
Matches: 46, Mismatches: 8, Indels: 10
0.72 0.12 0.16
Matches are distributed among these distances:
14 4 0.09
15 12 0.26
16 13 0.28
17 16 0.35
18 1 0.02
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.52
Consensus pattern (16 bp):
TTTAATAAATTTAATA
Found at i:33832451 original size:15 final size:15
Alignment explanation
Indices: 33832433--33832462 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
33832423 AAGTTATAAA
33832433 AATTAAAAATGAAAT
1 AATTAAAAATGAAAT
*
33832448 AATTAAACATGAAAT
1 AATTAAAAATGAAAT
33832463 GGCTTAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.03, G:0.07, T:0.27
Consensus pattern (15 bp):
AATTAAAAATGAAAT
Found at i:33842196 original size:41 final size:41
Alignment explanation
Indices: 33842094--33842199 Score: 176
Period size: 41 Copynumber: 2.6 Consensus size: 41
33842084 ACTGGCAATT
* * *
33842094 AGCCTGCTAGACGTAAAGTCCGAAATATTTCACCGGCGTCA
1 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
33842135 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
1 AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
*
33842176 AGTCTGCTAGACGTAAAGTCTGAA
1 AGCCTGCTAGACGTAAAGTCTGAA
33842200 TTATCTCATT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 61 1.00
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.23
Consensus pattern (41 bp):
AGCCTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCA
Found at i:33850060 original size:41 final size:41
Alignment explanation
Indices: 33849961--33850063 Score: 179
Period size: 41 Copynumber: 2.5 Consensus size: 41
33849951 GGCAATTAGT
* * *
33849961 CTGCTAGACGTAAAGTCCGAAATATTTCACCGGCGTCAAGC
1 CTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCAAGC
33850002 CTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCAAGC
1 CTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCAAGC
33850043 CTGCTAGACGTAAAGTCTGAA
1 CTGCTAGACGTAAAGTCTGAA
33850064 TTATCTCATT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 59 1.00
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.22
Consensus pattern (41 bp):
CTGCTAGACGTAAAGTCTGAAACATTTCACCGGCATCAAGC
Found at i:33857189 original size:26 final size:26
Alignment explanation
Indices: 33857120--33857191 Score: 99
Period size: 26 Copynumber: 2.8 Consensus size: 26
33857110 CATTTCGACC
* *
33857120 CACAGCTTGTGTGAGCAGACCCATTT
1 CACAGCTTGTGTGAGCATATCCATTT
** *
33857146 CACAGCTCATGTGAGCATATTCATTT
1 CACAGCTTGTGTGAGCATATCCATTT
33857172 CACAGCTTGTGTGAGCATAT
1 CACAGCTTGTGTGAGCATAT
33857192 ATATACAAGA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.31
Consensus pattern (26 bp):
CACAGCTTGTGTGAGCATATCCATTT
Found at i:33860977 original size:15 final size:16
Alignment explanation
Indices: 33860948--33860977 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33860938 CAAACATACT
33860948 TTAACACATTATCAAA
1 TTAACACATTATCAAA
33860964 TTAACACA-TATCAA
1 TTAACACATTATCAA
33860978 CAAGGTACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:33865852 original size:34 final size:34
Alignment explanation
Indices: 33865809--33865875 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
33865799 ACTTAAGTGA
33865809 ACTTAGTTGCATTCTAGGATATTATTTTAGCATG
1 ACTTAGTTGCATTCTAGGATATTATTTTAGCATG
33865843 ACTTAGTTGCATTCTAGGATATTATTTTAGCAT
1 ACTTAGTTGCATTCTAGGATATTATTTTAGCAT
33865876 TTTTAGAACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.27, C:0.12, G:0.16, T:0.45
Consensus pattern (34 bp):
ACTTAGTTGCATTCTAGGATATTATTTTAGCATG
Found at i:33911099 original size:18 final size:17
Alignment explanation
Indices: 33911051--33911099 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 17
33911041 TTAATTTTAA
33911051 ATTTTCTATTTCTATTTCT
1 ATTTTC-ATTT-TATTTCT
*
33911070 ATTTTAAGTTTTATTTCT
1 ATTTTCA-TTTTATTTCT
33911088 ATTTTTCATTTT
1 A-TTTTCATTTT
33911100 TATCTTTGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
18 13 0.50
19 13 0.50
ACGTcount: A:0.18, C:0.10, G:0.02, T:0.69
Consensus pattern (17 bp):
ATTTTCATTTTATTTCT
Found at i:33912680 original size:144 final size:144
Alignment explanation
Indices: 33912417--33912744 Score: 604
Period size: 144 Copynumber: 2.3 Consensus size: 144
33912407 CTAAACTGAG
*
33912417 TGATCCTGAACTGAAAAAGGAACCAAAAGTCTCTGAACCAGTCTGAAACAAGTCTGAACTGATAA
1 TGATCCTGAACTGATAAAGGAACCAAAAGTCTCTGAACCAGTCTGAAACAAGTCTGAACTGATAA
* *
33912482 ATGAGTCATCGAACAAATCTGAAATGGAAGCTAACTCAGTTACTGAGATAGAAGAGGTAGAATCT
66 ATGAGTCATCGAACAAATCTAAAATAGAAGCTAACTCAGTTACTGAGATAGAAGAGGTAGAATCT
33912547 GAGGAAGAATCGAA
131 GAGGAAGAATCGAA
*
33912561 TGATCCTAAACTGATAAAGGAACCAAAAGTCTCTGAACCAGTCTGAAACAAGTCTGAACTGATAA
1 TGATCCTGAACTGATAAAGGAACCAAAAGTCTCTGAACCAGTCTGAAACAAGTCTGAACTGATAA
33912626 ATGAGTCATCGAACAAATCTAAAATAGAAGCTAACTCAGTTACTGAGACT-GAAGAGGTAGAATC
66 ATGAGTCATCGAACAAATCTAAAATAGAAGCTAACTCAGTTACTGAGA-TAGAAGAGGTAGAATC
33912690 TGAGGAAGAATCGAA
130 TGAGGAAGAATCGAA
33912705 TGATCCTGAACTGATAAAGGAACCAAAAGTCTCTGAACCA
1 TGATCCTGAACTGATAAAGGAACCAAAAGTCTCTGAACCA
33912745 AGAGAGGATC
Statistics
Matches: 178, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
144 177 0.99
145 1 0.01
ACGTcount: A:0.42, C:0.17, G:0.21, T:0.20
Consensus pattern (144 bp):
TGATCCTGAACTGATAAAGGAACCAAAAGTCTCTGAACCAGTCTGAAACAAGTCTGAACTGATAA
ATGAGTCATCGAACAAATCTAAAATAGAAGCTAACTCAGTTACTGAGATAGAAGAGGTAGAATCT
GAGGAAGAATCGAA
Found at i:33913741 original size:8 final size:8
Alignment explanation
Indices: 33913730--33913754 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
33913720 AAAGGGAAAA
33913730 GATCATGG
1 GATCATGG
33913738 GATCATGG
1 GATCATGG
33913746 GATCATGG
1 GATCATGG
33913754 G
1 G
33913755 TCTACTCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.40, T:0.24
Consensus pattern (8 bp):
GATCATGG
Found at i:33916733 original size:25 final size:25
Alignment explanation
Indices: 33916701--33916766 Score: 98
Period size: 25 Copynumber: 2.6 Consensus size: 25
33916691 TTCCTGATTC
33916701 TCAGCTCG-AGAGAGCTTACCGATAT
1 TCAGCTCGCA-AGAGCTTACCGATAT
*
33916726 TCAGCTCGCATGAGCTTACCGATAT
1 TCAGCTCGCAAGAGCTTACCGATAT
*
33916751 TCAGCTCGCATGAGCT
1 TCAGCTCGCAAGAGCT
33916767 ACTGTTTACA
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
25 38 0.97
26 1 0.03
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (25 bp):
TCAGCTCGCAAGAGCTTACCGATAT
Found at i:33921105 original size:25 final size:25
Alignment explanation
Indices: 33921070--33921119 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
33921060 GTTTTCCGTG
33921070 TTAACTATTTTATGCATATTTATTT
1 TTAACTATTTTATGCATATTTATTT
*
33921095 TTAACTGTTTTATGCATATTTATTT
1 TTAACTATTTTATGCATATTTATTT
33921120 CTTTTCTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.08, G:0.06, T:0.60
Consensus pattern (25 bp):
TTAACTATTTTATGCATATTTATTT
Found at i:33922697 original size:22 final size:21
Alignment explanation
Indices: 33922644--33922697 Score: 56
Period size: 22 Copynumber: 2.6 Consensus size: 21
33922634 CAAAATTCAT
*
33922644 ATTTTAATTA-TAAAATTTGC
1 ATTTTAATTATTAAAATTTGA
* * *
33922664 ACTTAAATTATTAACATATTGA
1 ATTTTAATTATTAAAAT-TTGA
33922686 ATTTTAATTATT
1 ATTTTAATTATT
33922698 CTTATAATAA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 8 0.31
21 5 0.19
22 13 0.50
ACGTcount: A:0.41, C:0.06, G:0.04, T:0.50
Consensus pattern (21 bp):
ATTTTAATTATTAAAATTTGA
Found at i:33929827 original size:16 final size:15
Alignment explanation
Indices: 33929795--33929833 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
33929785 TGATAATAAC
33929795 TAATATATAATTATAT
1 TAAT-TATAATTATAT
*
33929811 TTATTATAATGTATAT
1 TAATTATAAT-TATAT
33929827 TAATTAT
1 TAATTAT
33929834 TATCGACTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (15 bp):
TAATTATAATTATAT
Found at i:33931321 original size:36 final size:36
Alignment explanation
Indices: 33931258--33931328 Score: 97
Period size: 36 Copynumber: 2.0 Consensus size: 36
33931248 TAAACTCTAT
* *
33931258 TCAGTTCAGCAGCCTTTTAGATTTATTCTAACTGAC
1 TCAGTTCAGCAGCCTTTCAGATCTATTCTAACTGAC
* * *
33931294 TCAGTTCAGCAGCGTTTCATATCTATTCTGACTGA
1 TCAGTTCAGCAGCCTTTCAGATCTATTCTAACTGA
33931329 AGCGCTCCGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.24, C:0.23, G:0.15, T:0.38
Consensus pattern (36 bp):
TCAGTTCAGCAGCCTTTCAGATCTATTCTAACTGAC
Found at i:33933226 original size:25 final size:26
Alignment explanation
Indices: 33933173--33933226 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
33933163 TTCTCCTAAA
*
33933173 TTTCAATTTTATTTAATTATTTAATT
1 TTTCAATTTTATTGAATTATTTAATT
*
33933199 TTTCAA-TTTATTGGATT-TTTAATAT
1 TTTCAATTTTATTGAATTATTTAAT-T
33933224 TTT
1 TTT
33933227 ATACTAATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 6 0.24
25 13 0.52
26 6 0.24
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.65
Consensus pattern (26 bp):
TTTCAATTTTATTGAATTATTTAATT
Found at i:33935560 original size:27 final size:27
Alignment explanation
Indices: 33935522--33935687 Score: 210
Period size: 27 Copynumber: 6.2 Consensus size: 27
33935512 TTACACTGTT
* ** *
33935522 ATGACCAAAATAACAACATAAGGTAAA
1 ATGACCAAAATACCCTCATAGGGTAAA
* *
33935549 ATGACCGAAATACCCTCATAGGGTAGA
1 ATGACCAAAATACCCTCATAGGGTAAA
33935576 ATGACCAAAATACCCTCATAGGGTAAA
1 ATGACCAAAATACCCTCATAGGGTAAA
* *
33935603 ATGACCGAAATACCCTCATAGGGTAGA
1 ATGACCAAAATACCCTCATAGGGTAAA
* * *
33935630 ATGATCGAAATA-CCTCCATACGGTAAA
1 ATGACCAAAATACCCT-CATAGGGTAAA
33935657 ATGACCAAAATACCC-CATAGGGTAAA
1 ATGACCAAAATACCCTCATAGGGTAAA
33935683 ATGAC
1 ATGAC
33935688 TGTTATACCC
Statistics
Matches: 121, Mismatches: 16, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
26 18 0.15
27 101 0.83
28 2 0.02
ACGTcount: A:0.44, C:0.21, G:0.17, T:0.18
Consensus pattern (27 bp):
ATGACCAAAATACCCTCATAGGGTAAA
Found at i:33945837 original size:28 final size:28
Alignment explanation
Indices: 33945784--33945837 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
33945774 AACATGAATG
*
33945784 AAAATAAAACTAAAACGAAATCCTAAGT
1 AAAATAAAACTAAAACGAAAACCTAAGT
*
33945812 AAAA-AAAACTAAAACCTAAAACCTAA
1 AAAATAAAACTAAAA-CGAAAACCTAA
33945838 ACTAAAAGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 10 0.43
28 13 0.57
ACGTcount: A:0.65, C:0.17, G:0.04, T:0.15
Consensus pattern (28 bp):
AAAATAAAACTAAAACGAAAACCTAAGT
Found at i:33950198 original size:16 final size:16
Alignment explanation
Indices: 33950120--33950196 Score: 127
Period size: 16 Copynumber: 4.8 Consensus size: 16
33950110 GCAGGAGACC
33950120 ATTAGAAGGTGTATTGG
1 ATTAG-AGGTGTATTGG
33950137 ATTAGAGGTGTATTGG
1 ATTAGAGGTGTATTGG
33950153 ATTAGAGGTGTATTGG
1 ATTAGAGGTGTATTGG
*
33950169 ATTAGAGGTGTAATGG
1 ATTAGAGGTGTATTGG
*
33950185 AATAGAGGTGTA
1 ATTAGAGGTGTA
33950197 ATAGCAAATC
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
16 53 0.91
17 5 0.09
ACGTcount: A:0.30, C:0.00, G:0.36, T:0.34
Consensus pattern (16 bp):
ATTAGAGGTGTATTGG
Found at i:33950231 original size:45 final size:44
Alignment explanation
Indices: 33950177--33950271 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
33950167 GGATTAGAGG
* *
33950177 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
33950222 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
33950266 TGTAAT
1 TGTAAT
33950272 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:33950441 original size:25 final size:25
Alignment explanation
Indices: 33950409--33950463 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
33950399 TAATTTAATC
*
33950409 ATAT-TTAAACATAATTATTATT-AA
1 ATATATTAAACAT-ATTATAATTAAA
*
33950433 ATATATTAAATATATTATAATTAAA
1 ATATATTAAACATATTATAATTAAA
33950458 ATATAT
1 ATATAT
33950464 AATTTAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
ATATATTAAACATATTATAATTAAA
Found at i:33962458 original size:49 final size:49
Alignment explanation
Indices: 33962421--33962532 Score: 179
Period size: 49 Copynumber: 2.3 Consensus size: 49
33962411 GTAGGGTACA
*
33962421 TTAGTTGCTAACCAGATGGGAAAATAAGATGGGCCACTAGTAGGGCATG
1 TTAGTTGCTAACCAGATAGGAAAATAAGATGGGCCACTAGTAGGGCATG
* * * *
33962470 TTAGCTGCTAACCAGGTAGGCAAATAAGATGGGCCACTGGTAGGGCATG
1 TTAGTTGCTAACCAGATAGGAAAATAAGATGGGCCACTAGTAGGGCATG
33962519 TTAGTTGCTAACCA
1 TTAGTTGCTAACCA
33962533 AAGTGGCGTA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 57 1.00
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.23
Consensus pattern (49 bp):
TTAGTTGCTAACCAGATAGGAAAATAAGATGGGCCACTAGTAGGGCATG
Found at i:33966036 original size:18 final size:19
Alignment explanation
Indices: 33965988--33966057 Score: 97
Period size: 19 Copynumber: 3.6 Consensus size: 19
33965978 AAAATTACAA
33965988 AAAATTCAAAATAATTTTT
1 AAAATTCAAAATAATTTTT
33966007 AAAATTCAAAATAATTTTT
1 AAAATTCAAAATAATTTTT
* *
33966026 AAAATTC-AAATTATTTATA
1 AAAATTCAAAATAATTT-TT
33966045 AAAATTTCAAAAT
1 AAAA-TTCAAAAT
33966058 TTATATATTT
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.17
19 31 0.67
20 3 0.07
21 4 0.09
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (19 bp):
AAAATTCAAAATAATTTTT
Found at i:33966083 original size:10 final size:10
Alignment explanation
Indices: 33966068--33966124 Score: 55
Period size: 10 Copynumber: 5.7 Consensus size: 10
33966058 TTATATATTT
33966068 TTTAAAAAAA
1 TTTAAAAAAA
*
33966078 TTT-AAAAAT
1 TTTAAAAAAA
*
33966087 TTTCAAAAAA
1 TTTAAAAAAA
33966097 TTCT-AAAAAA
1 TT-TAAAAAAA
*
33966107 TATATAAAAAA
1 TTTA-AAAAAA
33966118 TTTAAAA
1 TTTAAAA
33966125 TTTTAAAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
9 9 0.23
10 20 0.51
11 10 0.26
ACGTcount: A:0.63, C:0.04, G:0.00, T:0.33
Consensus pattern (10 bp):
TTTAAAAAAA
Found at i:33966088 original size:21 final size:20
Alignment explanation
Indices: 33966053--33966128 Score: 66
Period size: 21 Copynumber: 3.8 Consensus size: 20
33966043 TAAAAATTTC
* *
33966053 AAAATTTATATATTTTTTAAA
1 AAAATTTAAAAATTTTTT-AA
*
33966074 AAAATTTAAAAA-TTTTCAA
1 AAAATTTAAAAATTTTTTAA
* * *
33966093 AAAATTCTAAAAAATATATAA
1 AAAATT-TAAAAATTTTTTAA
33966114 AAAATTT-AAAATTTT
1 AAAATTTAAAAATTTT
33966129 AAAAATGTTC
Statistics
Matches: 45, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
19 14 0.31
20 11 0.24
21 20 0.44
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (20 bp):
AAAATTTAAAAATTTTTTAA
Found at i:33966095 original size:11 final size:10
Alignment explanation
Indices: 33966067--33966133 Score: 61
Period size: 11 Copynumber: 6.9 Consensus size: 10
33966057 TTTATATATT
33966067 TTTTAAAAAA
1 TTTTAAAAAA
*
33966077 ATTT-AAAAA
1 TTTTAAAAAA
33966086 TTTTCAAAAAA
1 TTTT-AAAAAA
*
33966097 TTCTAAAAAA
1 TTTTAAAAAA
*
33966107 TATATAAAAAA
1 T-TTTAAAAAA
33966118 -TTT--AAAA
1 TTTTAAAAAA
33966125 TTTTAAAAA
1 TTTTAAAAA
33966134 TGTTCTAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
7 4 0.09
8 3 0.07
9 10 0.22
10 13 0.28
11 16 0.35
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (10 bp):
TTTTAAAAAA
Found at i:33966116 original size:40 final size:40
Alignment explanation
Indices: 33966072--33966149 Score: 115
Period size: 39 Copynumber: 1.9 Consensus size: 40
33966062 ATATTTTTTA
33966072 AAAAAATTTAAAAATTTTCAAAAA-ATTCTAAAA-AATATAT
1 AAAAAATTT-AAAATTTT-AAAAATATTCTAAAATAATATAT
*
33966112 AAAAAATTTAAAATTTTAAAAATGTTCTAAAATAATAT
1 AAAAAATTTAAAATTTTAAAAATATTCTAAAATAATAT
33966150 TTTTGGGACC
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
38 5 0.14
39 16 0.46
40 14 0.40
ACGTcount: A:0.60, C:0.04, G:0.01, T:0.35
Consensus pattern (40 bp):
AAAAAATTTAAAATTTTAAAAATATTCTAAAATAATATAT
Found at i:33966933 original size:30 final size:30
Alignment explanation
Indices: 33966899--33966979 Score: 153
Period size: 30 Copynumber: 2.7 Consensus size: 30
33966889 GATTTTAAAG
*
33966899 AGTTCAGTGACCAAAATAGAAATAATGAAA
1 AGTTCAGTGACCAAAATAGAAACAATGAAA
33966929 AGTTCAGTGACCAAAATAGAAACAATGAAA
1 AGTTCAGTGACCAAAATAGAAACAATGAAA
33966959 AGTTCAGTGACCAAAATAGAA
1 AGTTCAGTGACCAAAATAGAA
33966980 TATGGTAATA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 50 1.00
ACGTcount: A:0.52, C:0.12, G:0.17, T:0.19
Consensus pattern (30 bp):
AGTTCAGTGACCAAAATAGAAACAATGAAA
Found at i:33968833 original size:18 final size:18
Alignment explanation
Indices: 33968806--33968843 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
33968796 CATATCATGA
*
33968806 TGATTTTGGTGGATTTGG
1 TGATTATGGTGGATTTGG
*
33968824 TGATTATGGTGGCTTTGG
1 TGATTATGGTGGATTTGG
33968842 TG
1 TG
33968844 GTGGTGCTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.03, G:0.39, T:0.47
Consensus pattern (18 bp):
TGATTATGGTGGATTTGG
Found at i:33970899 original size:25 final size:25
Alignment explanation
Indices: 33970865--33970914 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
33970855 TTGAGTATAC
33970865 TTGGTAGGGTTGGTAGGGAAGGAAA
1 TTGGTAGGGTTGGTAGGGAAGGAAA
33970890 TTGGTAGGGTTGGTAGGGAAGGAAA
1 TTGGTAGGGTTGGTAGGGAAGGAAA
33970915 GTGAAAAGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.00, G:0.48, T:0.24
Consensus pattern (25 bp):
TTGGTAGGGTTGGTAGGGAAGGAAA
Found at i:33971883 original size:20 final size:20
Alignment explanation
Indices: 33971858--33971898 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
33971848 TTAAGAGAAT
33971858 AGAAATAAAAAAAGAAAAAC
1 AGAAATAAAAAAAGAAAAAC
*
33971878 AGAAATAAATAAAGAAAAAC
1 AGAAATAAAAAAAGAAAAAC
33971898 A
1 A
33971899 AACGAACAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.78, C:0.05, G:0.10, T:0.07
Consensus pattern (20 bp):
AGAAATAAAAAAAGAAAAAC
Found at i:33975043 original size:13 final size:13
Alignment explanation
Indices: 33975025--33975049 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33975015 ACATTTTAAA
33975025 GAATAAAACAATT
1 GAATAAAACAATT
33975038 GAATAAAACAAT
1 GAATAAAACAAT
33975050 AAAGATAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.08, T:0.20
Consensus pattern (13 bp):
GAATAAAACAATT
Found at i:33988079 original size:40 final size:40
Alignment explanation
Indices: 33987996--33988258 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
33987986 TTGAATGCTG
* * * * * *
33987996 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
33988036 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
33988076 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
33988116 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
33988156 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
33988196 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
33988235 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
33988259 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:33988278 original size:79 final size:80
Alignment explanation
Indices: 33988035--33988293 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
33988025 AAGTGAATAT
* * * * * * *
33988035 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
33988099 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
33988115 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
33988180 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
33988195 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
33988259 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
33988274 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
33988294 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:33996028 original size:40 final size:40
Alignment explanation
Indices: 33995945--33996207 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
33995935 TTGAATGCTG
* * * * * *
33995945 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
33995985 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
33996025 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
33996065 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
33996105 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
33996145 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
33996184 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
33996208 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:33996227 original size:79 final size:80
Alignment explanation
Indices: 33995984--33996242 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
33995974 AAGTGAATAT
* * * * * * *
33995984 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
33996048 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
33996064 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
33996129 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
33996144 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
33996208 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
33996223 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
33996243 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:34002509 original size:15 final size:15
Alignment explanation
Indices: 34002465--34002532 Score: 73
Period size: 15 Copynumber: 4.5 Consensus size: 15
34002455 ATTTCAATAT
* *
34002465 AGTTTCATAATCTAT
1 AGTTTCACAATCTAA
* *
34002480 AGACTTCATAATCTAA
1 AG-TTTCACAATCTAA
* *
34002496 AGTTTCACAGTCTAT
1 AGTTTCACAATCTAA
34002511 AGTTTCACAATCTAA
1 AGTTTCACAATCTAA
34002526 AGTTTCA
1 AGTTTCA
34002533 GTATATAAGG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
15 31 0.70
16 13 0.30
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (15 bp):
AGTTTCACAATCTAA
Found at i:34002525 original size:30 final size:31
Alignment explanation
Indices: 34002465--34002532 Score: 93
Period size: 30 Copynumber: 2.2 Consensus size: 31
34002455 ATTTCAATAT
* *
34002465 AGTTTCATAATCTATAGACTTCATAATCTAA
1 AGTTTCACAATCTATAGACTTCACAATCTAA
* *
34002496 AGTTTCACAGTCTATAG-TTTCACAATCTAA
1 AGTTTCACAATCTATAGACTTCACAATCTAA
34002526 AGTTTCA
1 AGTTTCA
34002533 GTATATAAGG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
30 18 0.55
31 15 0.45
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.38
Consensus pattern (31 bp):
AGTTTCACAATCTATAGACTTCACAATCTAA
Found at i:34006943 original size:26 final size:26
Alignment explanation
Indices: 34006914--34006977 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 26
34006904 TACCCCATAG
*
34006914 CTCGTGTGAGCAGGCCCATTTCACAA
1 CTCGTGTGAGCAGACCCATTTCACAA
* * **
34006940 CTCGTGTGAGCATACTCATTTCATGA
1 CTCGTGTGAGCAGACCCATTTCACAA
34006966 CTCGTGTGAGCA
1 CTCGTGTGAGCA
34006978 ACCATGTATA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (26 bp):
CTCGTGTGAGCAGACCCATTTCACAA
Found at i:34016932 original size:27 final size:27
Alignment explanation
Indices: 34016898--34017222 Score: 357
Period size: 27 Copynumber: 12.1 Consensus size: 27
34016888 TCTGGACTAA
*
34016898 AATACCCCTGTAGGGTAAAATGACTGT
1 AATACCCCTGTAGGGTAAAATGACCGT
* * *
34016925 AATGCCCCTATATGGTAAAATGACCGT
1 AATACCCCTGTAGGGTAAAATGACCGT
* * * *
34016952 AATACCCCTGCAGGATAAAATAATCGT
1 AATACCCCTGTAGGGTAAAATGACCGT
* * *
34016979 AATGCCCCTTTAGGGTAAAATAACCGT
1 AATACCCCTGTAGGGTAAAATGACCGT
* * *
34017006 AATACCCCTGTAGGGTAAAATTATCAT
1 AATACCCCTGTAGGGTAAAATGACCGT
* * *
34017033 AATACCCCTATAGGGTAAAATAACTGT
1 AATACCCCTGTAGGGTAAAATGACCGT
* * * *
34017060 AATGCTCGTGTAGGGTAAAATGACCAT
1 AATACCCCTGTAGGGTAAAATGACCGT
*
34017087 AATACCCC-GTAGGGTAAAATGAACGT
1 AATACCCCTGTAGGGTAAAATGACCGT
*
34017113 AATGCCCCTGTAGGGTAAAATGACCGT
1 AATACCCCTGTAGGGTAAAATGACCGT
* * * *
34017140 AATACCCTTATAGGGTAAAATAATCGT
1 AATACCCCTGTAGGGTAAAATGACCGT
* * *
34017167 AAT-GCCCTATAGTGTAAAATGACCGT
1 AATACCCCTGTAGGGTAAAATGACCGT
*
34017193 AATACCCCTCTAGGGTAAAATGACCGT
1 AATACCCCTGTAGGGTAAAATGACCGT
34017220 AAT
1 AAT
34017223 GCCCTGGTGG
Statistics
Matches: 243, Mismatches: 53, Indels: 4
0.81 0.18 0.01
Matches are distributed among these distances:
26 44 0.18
27 199 0.82
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.25
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAATGACCGT
Found at i:34017675 original size:63 final size:62
Alignment explanation
Indices: 34017489--34017705 Score: 229
Period size: 64 Copynumber: 3.4 Consensus size: 62
34017479 TTTACTGTGA
* * * * * *
34017489 TGCTACTGATGGCTTTGTGTCGATCATAATACCATTACTGATGGTTTTGTACCGATCATATTAC
1 TGCTACTGATGGCTTTGTGCCGATCAT-TTA-CGTTACTGATGGTTGTGTGCCGATCATATCAC
* * * * * * *
34017553 CGTTATTGATGG-TTGTGTGTCGATCATTTCACTGTTACTAATAGTTGTGTGCCAATCATATCAC
1 TGCTACTGATGGCTT-TGTGCCGATCATTT-AC-GTTACTGATGGTTGTGTGCCGATCATATCAC
*
34017617 TGCTACTGATGGCTTTGTGCCGATCATGTTACGTTACTGATGGCTGTGTGCCGATCATATCAC
1 TGCTACTGATGGCTTTGTGCCGATCAT-TTACGTTACTGATGGTTGTGTGCCGATCATATCAC
* *
34017680 TGCTACTGATGGCTTTATGCCAATCA
1 TGCTACTGATGGCTTTGTGCCGATCA
34017706 CATTACTGTA
Statistics
Matches: 127, Mismatches: 21, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
63 55 0.43
64 68 0.54
65 4 0.03
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (62 bp):
TGCTACTGATGGCTTTGTGCCGATCATTTACGTTACTGATGGTTGTGTGCCGATCATATCAC
Found at i:34017680 original size:95 final size:95
Alignment explanation
Indices: 34017524--34017725 Score: 246
Period size: 95 Copynumber: 2.1 Consensus size: 95
34017514 ATAATACCAT
* * * * * *
34017524 TACTGATGGTTTTGTACCGATCATATTACCGTTATTGATGGTTGTGTGTCGATCATTTCACTGTT
1 TACTGATGGCTTTGTACCGATCATATTACCGTTACTGATGGCTGTGTGCCGATCATATCACTGCT
* *
34017589 ACTAATAG-TTGTGTGCCAATCATATCACTG
66 ACTAATAGCTT-TATGCCAATCACATCACTG
* *
34017619 CTACTGATGGCTTTGTGCCGATCATGTTA-CGTTACTGATGGCTGTGTGCCGATCATATCACTGC
1 -TACTGATGGCTTTGTACCGATCATATTACCGTTACTGATGGCTGTGTGCCGATCATATCACTGC
* * *
34017683 TACTGATGGCTTTATGCCAATCACATTACTG
65 TACTAATAGCTTTATGCCAATCACATCACTG
*
34017714 TACTTATGGCTT
1 TACTGATGGCTT
34017726 GTAGACATTC
Statistics
Matches: 91, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
94 11 0.12
95 53 0.58
96 27 0.30
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.39
Consensus pattern (95 bp):
TACTGATGGCTTTGTACCGATCATATTACCGTTACTGATGGCTGTGTGCCGATCATATCACTGCT
ACTAATAGCTTTATGCCAATCACATCACTG
Found at i:34017692 original size:32 final size:32
Alignment explanation
Indices: 34017492--34017725 Score: 199
Period size: 32 Copynumber: 7.4 Consensus size: 32
34017482 ACTGTGATGC
* **
34017492 TACTGATGGCTTTGTGTCGATCATAAT-ACCAT
1 TACTGATGGCTTTGTGCCGATCAT-ATCACTGT
* * * *
34017524 TACTGATGGTTTTGTACCGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATCACTGT
* * *
34017556 TATTGATGG-TTGTGTGTCGATCATTTCACTGT
1 TACTGATGGCTT-TGTGCCGATCATATCACTGT
* * * *
34017588 TACTAATAG-TTGTGTGCCAATCATATCACTGC
1 TACTGATGGCTT-TGTGCCGATCATATCACTGT
* *
34017620 TACTGATGGCTTTGTGCCGATCATGTTAC-GT
1 TACTGATGGCTTTGTGCCGATCATATCACTGT
* *
34017651 TACTGATGGCTGTGTGCCGATCATATCACTGC
1 TACTGATGGCTTTGTGCCGATCATATCACTGT
* * * *
34017683 TACTGATGGCTTTATGCCAATCACATTACTG-
1 TACTGATGGCTTTGTGCCGATCATATCACTGT
*
34017714 TACTTATGGCTT
1 TACTGATGGCTT
34017726 GTAGACATTC
Statistics
Matches: 165, Mismatches: 33, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
31 42 0.25
32 121 0.73
33 2 0.01
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCATATCACTGT
Found at i:34017723 original size:63 final size:63
Alignment explanation
Indices: 34017598--34017724 Score: 184
Period size: 63 Copynumber: 2.0 Consensus size: 63
34017588 TACTAATAGT
* * **
34017598 TGTGTGCCAATCATATCACTGCTACTGATGGCTTTGTGCCGATCATGTTACGTTACTGATGGC
1 TGTGTGCCAATCATATCACTGCTACTGATGGCTTTATGCCAATCACATTACGTTACTGATGGC
* *
34017661 TGTGTGCCGATCATATCACTGCTACTGATGGCTTTATGCCAATCACATTAC-TGTACTTATGGC
1 TGTGTGCCAATCATATCACTGCTACTGATGGCTTTATGCCAATCACATTACGT-TACTGATGGC
34017724 T
1 T
34017725 TGTAGACATT
Statistics
Matches: 57, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
62 1 0.02
63 56 0.98
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.35
Consensus pattern (63 bp):
TGTGTGCCAATCATATCACTGCTACTGATGGCTTTATGCCAATCACATTACGTTACTGATGGC
Found at i:34017804 original size:26 final size:26
Alignment explanation
Indices: 34017775--34017827 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
34017765 GACTCTTAGT
* *
34017775 CATTCTAACTACTAGCAGCTCTGCTG
1 CATTATAACTACTAGCAGCTATGCTG
* * *
34017801 CATTATTACTATTGGCAGCTATGCTG
1 CATTATAACTACTAGCAGCTATGCTG
34017827 C
1 C
34017828 GATATTGGTG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.23, C:0.26, G:0.17, T:0.34
Consensus pattern (26 bp):
CATTATAACTACTAGCAGCTATGCTG
Found at i:34037568 original size:379 final size:379
Alignment explanation
Indices: 34036869--34037627 Score: 1338
Period size: 379 Copynumber: 2.0 Consensus size: 379
34036859 TCATATACAT
* *
34036869 ATTAATCACTATGAGTAATGTCGTGACAATTACATAATAATCCAAGAAACATACTCATAATGGGT
1 ATTAATCACTATGAGTAATGTCGTGACAATTACATAATAATCCAAGAAACATACTCATAACGAGT
* *
34036934 CAGTCCAATATGTTGTTCTCTAACACACATATTCATGCATCGATTCTGACATTCCATATCAATGG
66 CAGTCCAATATGTTGTTCTCTAACACACATATTCAAGCATCGATTCTGACATTCCATATCAATGA
*
34036999 CAACTCTTTATCATCAATCAACTACATGTTAGTCTTAATGCATTATCGTTGTCCTATCCAACAAT
131 CAACTCTTTATCATCAATCAACTACATGTTAGTCTTAATGCATTATCGTTGTCCTAGCCAACAAT
* * *
34037064 AATACTTTACTAAGGATCTTTTAAGAATAATCATATTATTCTTAGAACATTATTATAAAATAGTT
196 AATACTTGACTAAGGACCTTTTAAGAATAATCATATTATTCTCAGAACATTATTATAAAATAGTT
*
34037129 TATTTACAAACACAGAAAAGAAACTGAAATAATAATGGTAACACCTTATATTAATAAACATGATA
261 TATTTACAAACACAAAAAAGAAACTGAAATAATAATGGTAACACCTTATATTAATAAACATGATA
* *
34037194 AATCAAGTATGTTATTACAACCATTTCATGATTGATCTTTGGGCATACTCTAAC
326 AATCAAGTATGTTATTACAACCATCTCATGATTGATCTTTAGGCATACTCTAAC
* *
34037248 ATTAATCACTATGAGTAATGTTGTGACAATTACATGATAATCCAAGAAACATACTCATAACGAGT
1 ATTAATCACTATGAGTAATGTCGTGACAATTACATAATAATCCAAGAAACATACTCATAACGAGT
*
34037313 CAGTCCAATATGTTGTTCTCTAACACACATATTCAAGCATCGATTTTGACATTCCATATCAATGA
66 CAGTCCAATATGTTGTTCTCTAACACACATATTCAAGCATCGATTCTGACATTCCATATCAATGA
*
34037378 CAACTCTTTATCATCAATCAACTACATGTTAGTCTTAATGCATTATTGTTGTCCTAGCCAACAAT
131 CAACTCTTTATCATCAATCAACTACATGTTAGTCTTAATGCATTATCGTTGTCCTAGCCAACAAT
* *
34037443 AATACTTGACTAAGGACCTTTTAAGAATAATCATATTATTCTCAGGACATTATTGTAAAATAGTT
196 AATACTTGACTAAGGACCTTTTAAGAATAATCATATTATTCTCAGAACATTATTATAAAATAGTT
* * *
34037508 TATTTATACACACAAAAAAGAAACTGAAATAATAATGGTAACGCCTTATATTAATAAACATGATA
261 TATTTACAAACACAAAAAAGAAACTGAAATAATAATGGTAACACCTTATATTAATAAACATGATA
34037573 AATCAAGTATGTTATTACAACCATCTCATGATTGATCTTTAGGCATACTCTAAC
326 AATCAAGTATGTTATTACAACCATCTCATGATTGATCTTTAGGCATACTCTAAC
34037627 A
1 A
34037628 ATCTCCCACT
Statistics
Matches: 360, Mismatches: 20, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
379 360 1.00
ACGTcount: A:0.38, C:0.18, G:0.11, T:0.34
Consensus pattern (379 bp):
ATTAATCACTATGAGTAATGTCGTGACAATTACATAATAATCCAAGAAACATACTCATAACGAGT
CAGTCCAATATGTTGTTCTCTAACACACATATTCAAGCATCGATTCTGACATTCCATATCAATGA
CAACTCTTTATCATCAATCAACTACATGTTAGTCTTAATGCATTATCGTTGTCCTAGCCAACAAT
AATACTTGACTAAGGACCTTTTAAGAATAATCATATTATTCTCAGAACATTATTATAAAATAGTT
TATTTACAAACACAAAAAAGAAACTGAAATAATAATGGTAACACCTTATATTAATAAACATGATA
AATCAAGTATGTTATTACAACCATCTCATGATTGATCTTTAGGCATACTCTAAC
Found at i:34042292 original size:12 final size:13
Alignment explanation
Indices: 34042275--34042303 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
34042265 CTCATACACG
34042275 AATAAATAAA-GC
1 AATAAATAAATGC
34042287 AATAAATAAATGC
1 AATAAATAAATGC
34042300 AATA
1 AATA
34042304 GTTATAGCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:34050040 original size:3 final size:3
Alignment explanation
Indices: 34050032--34050063 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
34050022 CCCTAATATC
34050032 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
34050064 GGTGCCGCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:34057647 original size:21 final size:22
Alignment explanation
Indices: 34057611--34057663 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 22
34057601 AAATTTTAAA
* *
34057611 AAATATATTTTTTAAAAAAATT
1 AAATAAATTTTATAAAAAAATT
* *
34057633 -ATTAAATTTTATAAAAATATT
1 AAATAAATTTTATAAAAAAATT
34057654 AAATAAATTT
1 AAATAAATTT
34057664 CAAAATTTTC
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
21 17 0.68
22 8 0.32
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
AAATAAATTTTATAAAAAAATT
Found at i:34058776 original size:38 final size:38
Alignment explanation
Indices: 34058720--34058833 Score: 156
Period size: 38 Copynumber: 3.0 Consensus size: 38
34058710 CGGCATCGTG
*
34058720 GAATGGTTATCTATTGGCTCTACGAAGCGACACCATGA
1 GAATGGTTATCTATTGGCTCTACGGAGCGACACCATGA
* * * * *
34058758 GAATGGTTAACTACTGGCTCTATGGAGTGACACTATGA
1 GAATGGTTATCTATTGGCTCTACGGAGCGACACCATGA
**
34058796 GAATTATTATCTATTGGCTCTACGGAGCGACACCATGA
1 GAATGGTTATCTATTGGCTCTACGGAGCGACACCATGA
34058834 AAATAGTCTA
Statistics
Matches: 63, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 63 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (38 bp):
GAATGGTTATCTATTGGCTCTACGGAGCGACACCATGA
Found at i:34059415 original size:21 final size:20
Alignment explanation
Indices: 34059364--34059416 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 20
34059354 CACTTTAATT
34059364 TTAAATTAATATAATATTTA
1 TTAAATTAATATAATATTTA
34059384 TTAAATTTAATATTAA-ATCTTA
1 TTAAA-TTAATA-TAATAT-TTA
*
34059406 TTAAAATAATA
1 TTAAATTAATA
34059417 GAATGCTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 5 0.17
21 13 0.45
22 11 0.38
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (20 bp):
TTAAATTAATATAATATTTA
Found at i:34061130 original size:16 final size:16
Alignment explanation
Indices: 34061109--34061139 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34061099 CTATGCATGC
*
34061109 AAAATATAAAAGACAA
1 AAAATAAAAAAGACAA
34061125 AAAATAAAAAAGACA
1 AAAATAAAAAAGACA
34061140 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.77, C:0.06, G:0.06, T:0.10
Consensus pattern (16 bp):
AAAATAAAAAAGACAA
Found at i:34065772 original size:68 final size:69
Alignment explanation
Indices: 34065646--34065843 Score: 199
Period size: 68 Copynumber: 2.9 Consensus size: 69
34065636 ATGGGAAAAT
* * * * * **
34065646 ATGAAACCATGTTGTGTAAGACCATAGCTGCA-CTATGGCAACATGTGAAGTCTGCCAGGACAA-
1 ATGACACCATATTGTGTAAGACCATAGCAG-AGCTATGGCAACATATGAAATCCACCAGGACAAG
34065709 TAAAC
65 TAAAC
* **
34065714 ATGACACCATATTGTGTAAGACCATAGCAGAGTTATAACAACATATGAAATCCACCAGGA-AAGT
1 ATGACACCATATTGTGTAAGACCATAGCAGAGCTATGGCAACATATGAAATCCACCAGGACAAGT
34065778 AAAC
66 AAAC
* * ** *
34065782 GTGACATCATATAATGTAAGACCATAGTTAG-GCTATGGCAACATAT-AAAGTCCACCAGGACA
1 ATGACACCATATTGTGTAAGACCATAG-CAGAGCTATGGCAACATATGAAA-TCCACCAGGACA
34065844 GAAAACAAGG
Statistics
Matches: 107, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
67 6 0.06
68 98 0.92
69 3 0.03
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.22
Consensus pattern (69 bp):
ATGACACCATATTGTGTAAGACCATAGCAGAGCTATGGCAACATATGAAATCCACCAGGACAAGT
AAAC
Found at i:34068665 original size:104 final size:104
Alignment explanation
Indices: 34068485--34068708 Score: 369
Period size: 104 Copynumber: 2.2 Consensus size: 104
34068475 TGTATATAAA
** * *
34068485 AGGGGTTGCTGTGTGCTGATTCCCCGATTTATGGGTGGTGCTATGTGCGTGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
34068550 TGAAATGTGAAAGGGGGTTGCTATGTGCAGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCAGATTCCCCCG
* *
34068589 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCG-TGATCCACCATATCT
*
34068653 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCAGATTCCCCCG
34068693 AGGGGTTGCTAAGTGC
1 AGGGGTTGCTAAGTGC
34068709 GATATCCATT
Statistics
Matches: 112, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
104 111 0.99
105 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.32, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGGTGGTGCTAAGTGCGTGATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCAGATTCCCCCG
Found at i:34068760 original size:71 final size:72
Alignment explanation
Indices: 34068627--34068778 Score: 252
Period size: 71 Copynumber: 2.1 Consensus size: 72
34068617 TCATTGGTGG
* *
34068627 TGCTAAGTGCGATATCCACCATATCTTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
34068692 GAGGGGT
66 GAGGGGT
***
34068699 TGCTAAGTGCGATATCCATTGTATATTTGAAATG-AAAAGGGGGTTGCTATGTGCTGATTCCCCC
1 TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
34068763 GAGGGGT
66 GAGGGGT
34068770 TGCTAAGTG
1 TGCTAAGTG
34068779 ATGATTCCCC
Statistics
Matches: 75, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
71 45 0.60
72 30 0.40
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (72 bp):
TGCTAAGTGCGATATCCACCATATATTTGAAATGTAAAAGGGGGTTGCTATGTGCTGATTCCCCC
GAGGGGT
Found at i:34078401 original size:40 final size:40
Alignment explanation
Indices: 34078308--34078572 Score: 270
Period size: 40 Copynumber: 6.7 Consensus size: 40
34078298 GCTCCTCGTT
* * *
34078308 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
34078348 C-AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
34078387 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
34078427 CAAAGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTTAGTAACTCGCA
* *
34078467 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
34078507 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
34078548 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
34078573 CAGCATTCAA
Statistics
Matches: 196, Mismatches: 23, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 14 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:34078581 original size:41 final size:41
Alignment explanation
Indices: 34078504--34078581 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
34078494 TTAGTATCTC
* * *
34078504 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
34078545 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
34078582 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:34109112 original size:122 final size:122
Alignment explanation
Indices: 34108895--34109137 Score: 441
Period size: 122 Copynumber: 2.0 Consensus size: 122
34108885 AATGATACAA
* *
34108895 TAAAAATAGATATGGAAGGTTAGTTCACTCTTTCTCCAAGGTTTTACCTGGATTGAAACATACTC
1 TAAAAAAAGATATGGAAGGTTAGTTCACTCTTTCTCCAAGGTTTTACCCGGATTGAAACATACTC
34108960 TAAAATATCAAAATTTCCTCCCAACCATAATTCCAAGAAGACAACTTCAATCTTATG
66 TAAAATATCAAAATTTCCTCCCAACCATAATTCCAAGAAGACAACTTCAATCTTATG
*
34109017 TAAAAAAAGATATGGAAGGTTAGTTCACTCTTTCTCTAAGGTTTTACCCGGATTGAAACATACTC
1 TAAAAAAAGATATGGAAGGTTAGTTCACTCTTTCTCCAAGGTTTTACCCGGATTGAAACATACTC
* *
34109082 TAAAATATCAAAATTTCCTCCCAACCATAATTCCAAGAAGATAACTTTAATCTTAT
66 TAAAATATCAAAATTTCCTCCCAACCATAATTCCAAGAAGACAACTTCAATCTTAT
34109138 AGAGTATCTA
Statistics
Matches: 116, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
122 116 1.00
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.32
Consensus pattern (122 bp):
TAAAAAAAGATATGGAAGGTTAGTTCACTCTTTCTCCAAGGTTTTACCCGGATTGAAACATACTC
TAAAATATCAAAATTTCCTCCCAACCATAATTCCAAGAAGACAACTTCAATCTTATG
Found at i:34110444 original size:29 final size:29
Alignment explanation
Indices: 34110388--34110444 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
34110378 TAATTTCTCC
* *
34110388 AAGATTTTTGTTTATTTTTTTTTCTAATA
1 AAGATTTTTGTTTATTTTATTATCTAATA
*
34110417 AAGATTTTTGTTTCCTTTTATTAT-TAAT
1 AAGATTTTTGTTT-ATTTTATTATCTAAT
34110445 TTCGTCGTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 17 0.71
30 7 0.29
ACGTcount: A:0.25, C:0.05, G:0.07, T:0.63
Consensus pattern (29 bp):
AAGATTTTTGTTTATTTTATTATCTAATA
Found at i:34110886 original size:11 final size:11
Alignment explanation
Indices: 34110870--34110897 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
34110860 TCAATTATTT
34110870 TCTCAATTTGC
1 TCTCAATTTGC
34110881 TCTCAATTTGC
1 TCTCAATTTGC
34110892 TCTCAA
1 TCTCAA
34110898 ATTCCTTCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.21, C:0.29, G:0.07, T:0.43
Consensus pattern (11 bp):
TCTCAATTTGC
Found at i:34110920 original size:11 final size:11
Alignment explanation
Indices: 34110855--34110921 Score: 52
Period size: 11 Copynumber: 6.0 Consensus size: 11
34110845 CAAACTAATC
34110855 TTCTCTCAATTAT
1 TTCTCTCAA--AT
34110868 TT-TCTC-AAT
1 TTCTCTCAAAT
34110877 TTGCTCTC-AAT
1 TT-CTCTCAAAT
34110888 TTGCTCTCAAAT
1 TT-CTCTCAAAT
*
34110900 TCCT-TCCAAAT
1 TTCTCT-CAAAT
34110911 TTCTCTCAAAT
1 TTCTCTCAAAT
34110922 CTATATTTAA
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
9 4 0.09
10 1 0.02
11 31 0.66
12 9 0.19
13 2 0.04
ACGTcount: A:0.24, C:0.27, G:0.03, T:0.46
Consensus pattern (11 bp):
TTCTCTCAAAT
Found at i:34112799 original size:18 final size:17
Alignment explanation
Indices: 34112771--34112810 Score: 53
Period size: 18 Copynumber: 2.3 Consensus size: 17
34112761 TCAGGTGCGT
* *
34112771 TTCCTAGCCCTTTTATG
1 TTCCTAACCCTTATATG
34112788 TATCCTAACCCTTATATG
1 T-TCCTAACCCTTATATG
34112806 TTCCT
1 TTCCT
34112811 CTTTCCGAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.17, C:0.30, G:0.07, T:0.45
Consensus pattern (17 bp):
TTCCTAACCCTTATATG
Found at i:34113348 original size:27 final size:25
Alignment explanation
Indices: 34113318--34113376 Score: 61
Period size: 22 Copynumber: 2.4 Consensus size: 25
34113308 TAATTAAATG
34113318 CTTAATTTAATTAACAAACCCTAAACC
1 CTTAA-TTAATTAA-AAACCCTAAACC
*
34113345 CTT-A--ACTTAAAAACCCTAAACC
1 CTTAATTAATTAAAAACCCTAAACC
34113367 CTTAACTTAA
1 CTTAA-TTAA
34113377 AAACCCTAAC
Statistics
Matches: 26, Mismatches: 2, Indels: 9
0.70 0.05 0.24
Matches are distributed among these distances:
22 15 0.58
23 6 0.23
26 2 0.08
27 3 0.12
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (25 bp):
CTTAATTAATTAAAAACCCTAAACC
Found at i:34113358 original size:22 final size:22
Alignment explanation
Indices: 34113324--34113389 Score: 109
Period size: 22 Copynumber: 3.0 Consensus size: 22
34113314 AATGCTTAAT
34113324 TTAA-TTAACAAACCCTAAACCC
1 TTAACTTAA-AAACCCTAAACCC
34113346 TTAACTTAAAAACCCTAAACCC
1 TTAACTTAAAAACCCTAAACCC
34113368 TTAACTTAAAAACCCT-AACCC
1 TTAACTTAAAAACCCTAAACCC
34113389 T
1 T
34113390 AACCCTTGAC
Statistics
Matches: 43, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
21 6 0.14
22 33 0.77
23 4 0.09
ACGTcount: A:0.44, C:0.32, G:0.00, T:0.24
Consensus pattern (22 bp):
TTAACTTAAAAACCCTAAACCC
Found at i:34117225 original size:23 final size:23
Alignment explanation
Indices: 34117199--34117247 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
34117189 GGCATCACCT
* *
34117199 TTTTGTTAA-TAATTTTATTTTTA
1 TTTTGTTAAGAAATATTA-TTTTA
*
34117222 TTTTTTTAAGAAATATTATTTTA
1 TTTTGTTAAGAAATATTATTTTA
34117245 TTT
1 TTT
34117248 AGTAGTGTCG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 16 0.73
24 6 0.27
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (23 bp):
TTTTGTTAAGAAATATTATTTTA
Found at i:34118004 original size:209 final size:216
Alignment explanation
Indices: 34117701--34118266 Score: 737
Period size: 224 Copynumber: 2.6 Consensus size: 216
34117691 TGTGTTTATT
* *
34117701 TTTAGTTTTATG-TTTTGTGATTTTTTATGAATGT--TATTTTTTTATTTTTTT-ATTATTTGAA
1 TTTAGTTTAATGTTTTTGTGATTTTTTATGAATGTAATATTTTTTTGTTTTTTTAATTATTTGAA
*
34117762 AGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTATTTAGTTTAGTATTTTGTGA
66 AGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTTTAGTTTAGTATTTTGTG-
* * * * *
34117827 ATTTTT-ATTAATGTAAA-T-TTTTT-TA-AAATTATTTTATAGTTACTTT-TTAATAATTTATG
130 ATTTTTCATGAACGTAAATTCTTTTTGTATAAATTATTTGAAAGTCACTTTGTTAATAATTTATG
*
34117886 ATTAGGTTATAAATTGTTTGTG
195 ATTAGGTTATAAATTGTTTGTA
* *
34117908 TTTAGTTT-A-GTATTTTGTGA-TTTTTATGAATGTAATTTTTTTTTGTTTTTTTAATTATTTTA
1 TTTAGTTTAATGT-TTTTGTGATTTTTTATGAATGTAATATTTTTTTGTTTTTTTAATTATTTGA
* * *
34117970 TAGTTATTTTGTTAGTAATTTATGATTTGGTTATAAATTGTTTGTGTTTAGTTTAGTTTTTTGTG
65 AAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTTTAGTTTAGTATTTTGTG
* *
34118035 ATTTTTCATGAACGTAAATTTCTTTTTGTATTTTTTAAATTATTTGAAAGTCATTTTGTTAGTAA
130 ATTTTTCATGAACGTAAA-TTCTTTTTGTA-----TAAATTATTTGAAAGTCACTTTGTTAATAA
*
34118100 TTTATGGTTAGGTTATAAATTGTTTGTA
189 TTTATGATTAGGTTATAAATTGTTTGTA
*
34118128 TTTAGTTTAATGTTTATTGTGATTTTTTTATGAATGTAA-AATTTTTTGTTTTTTTTAATTATTT
1 TTTAGTTTAATGTTT-TTGTGA-TTTTTTATGAATGTAATATTTTTTTG-TTTTTTTAATTATTT
* *
34118192 GAAAGTTATTTTGTTAGTAATTTTTGATTAGGTTATAAATTGTTTGTGTTTAGTTTAGTGTTTAT
63 GAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTTTAGTTTAGT-ATT-T
34118257 TGTGATTTTT
126 TGTGATTTTT
34118267 TTATGAATAC
Statistics
Matches: 312, Mismatches: 22, Indels: 31
0.85 0.06 0.08
Matches are distributed among these distances:
205 1 0.00
206 14 0.04
207 16 0.05
208 21 0.07
209 78 0.25
211 1 0.00
212 5 0.02
213 2 0.01
219 17 0.05
220 40 0.13
221 3 0.01
222 8 0.03
223 7 0.02
224 85 0.27
225 3 0.01
226 11 0.04
ACGTcount: A:0.25, C:0.01, G:0.14, T:0.60
Consensus pattern (216 bp):
TTTAGTTTAATGTTTTTGTGATTTTTTATGAATGTAATATTTTTTTGTTTTTTTAATTATTTGAA
AGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGTTTAGTTTAGTATTTTGTGA
TTTTTCATGAACGTAAATTCTTTTTGTATAAATTATTTGAAAGTCACTTTGTTAATAATTTATGA
TTAGGTTATAAATTGTTTGTA
Found at i:34118114 original size:112 final size:109
Alignment explanation
Indices: 34117844--34118266 Score: 582
Period size: 112 Copynumber: 3.8 Consensus size: 109
34117834 TTAATGTAAA
* * * *
34117844 TTTTTTTAAAATTATTTTATAGTTACTTT-TTAATAATTTATGATTAGGTTATAAATTGTTTGTG
1 TTTTTTT-AAATTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTG
* *
34117908 TTTAGTTTAGTATTTTGTGATTTTTATGAATGTAATTTTTTTTTG
65 TTTAGTTTAGTTTTTTGTGATTTTTATGAATGTAAATTTTTTTTG
* * *
34117953 TTTTTTT-AATTATTTTATAGTTATTTTGTTAGTAATTTATGATTTGGTTATAAATTGTTTGTGT
1 TTTTTTTAAATTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGT
*
34118017 TTAGTTTAGTTTTTTGTGATTTTTCATGAACGTAAATTTCTTTTTG
66 TTAGTTTAGTTTTTTGTGATTTTT-ATGAATGTAAATTT-TTTTTG
* * *
34118063 TATTTTTTAAATTATTTGAAAGTCATTTTGTTAGTAATTTATGGTTAGGTTATAAATTGTTTGTA
1 T-TTTTTTAAATTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTG
* *
34118128 TTTAGTTTAATGTTTATTGTGATTTTTTTATGAATGTAAA-ATTTTTTG
65 TTTAGTTT-A-GTTTTTTGTGA--TTTTTATGAATGTAAATTTTTTTTG
* *
34118176 TTTTTTTTAATTATTTGAAAGTTATTTTGTTAGTAATTTTTGATTAGGTTATAAATTGTTTGTGT
1 TTTTTTTAAATTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGT
34118241 TTAGTTTAGTGTTTATTGTGATTTTT
66 TTAGTTTAGT-TTT-TTGTGATTTTT
34118267 TTATGAATAC
Statistics
Matches: 282, Mismatches: 21, Indels: 21
0.87 0.06 0.06
Matches are distributed among these distances:
107 19 0.07
108 57 0.20
109 19 0.07
110 14 0.05
111 9 0.03
112 130 0.46
113 8 0.03
114 11 0.04
115 10 0.04
116 5 0.02
ACGTcount: A:0.24, C:0.01, G:0.15, T:0.60
Consensus pattern (109 bp):
TTTTTTTAAATTATTTGAAAGTTATTTTGTTAGTAATTTATGATTAGGTTATAAATTGTTTGTGT
TTAGTTTAGTTTTTTGTGATTTTTATGAATGTAAATTTTTTTTG
Found at i:34123893 original size:108 final size:105
Alignment explanation
Indices: 34123702--34123947 Score: 286
Period size: 108 Copynumber: 2.3 Consensus size: 105
34123692 TTTATAATAG
* **
34123702 TTACTAACAAAATAA-TGTACAAATAAATTAAAAAATGTTAAAAGATTACATTCATAACCTAACA
1 TTACTAACAAAATAACTTTA-AAATAAATTAAAAAATAATAAAAGATTACATTCATAACCTAACA
* *
34123766 AATCACAATAAACCCTAAAC-AAACAATTAACCTAATCACAAAAC
65 AATCACAATAAACACTAAACTAAACAAATAA--T--TCACAAAAC
*
34123810 TTACTAACAAAATAACTTTAAAATAAATTAAAAATTAATAAAA-ATTA-ATATCCATAACCTAAC
1 TTACTAACAAAATAACTTTAAAATAAATTAAAAAATAATAAAAGATTACAT-T-CATAACCTAAC
* * * * *
34123873 AAATCACAATAAACATTAAACTAAACAAATAATTTATAATAG
64 AAATCACAATAAACACTAAACTAAACAAATAATTCACAAAAC
*
34123915 TAACTAACAAAA-AACTTTAAAATAAATTAAAAA
1 TTACTAACAAAATAACTTTAAAATAAATTAAAAA
34123948 CAACATAAAA
Statistics
Matches: 122, Mismatches: 12, Indels: 12
0.84 0.08 0.08
Matches are distributed among these distances:
104 21 0.17
105 16 0.13
106 2 0.02
107 6 0.05
108 65 0.53
109 12 0.10
ACGTcount: A:0.58, C:0.15, G:0.02, T:0.26
Consensus pattern (105 bp):
TTACTAACAAAATAACTTTAAAATAAATTAAAAAATAATAAAAGATTACATTCATAACCTAACAA
ATCACAATAAACACTAAACTAAACAAATAATTCACAAAAC
Found at i:34123933 original size:25 final size:25
Alignment explanation
Indices: 34123891--34123938 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
34123881 ATAAACATTA
* *
34123891 AACTAAACAAATAATTTATAATAGT
1 AACTAAACAAAAAATTTAAAATAGT
34123916 AACT-AACAAAAAACTTTAAAATA
1 AACTAAACAAAAAA-TTTAAAATA
34123939 AATTAAAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.60, C:0.10, G:0.02, T:0.27
Consensus pattern (25 bp):
AACTAAACAAAAAATTTAAAATAGT
Found at i:34132267 original size:27 final size:27
Alignment explanation
Indices: 34132237--34132699 Score: 415
Period size: 27 Copynumber: 17.1 Consensus size: 27
34132227 CCAATATTTT
34132237 TAAAATGACCGTAATACCCCTGTAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
* * * * *
34132264 TAAAATGACTGAAAAACCCTTATAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
* *
34132291 TAAAATGACCGTAATGCCCTTGTAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
* * * **
34132318 TAAAATGATCGAAAAACCCCCATAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
* *
34132345 TAAAATGATCGTAATGTCCCC-GTAGGG
1 TAAAATGACCGTAAT-ACCCCTGTAGGG
* * * * *
34132372 TAAAATGATCGTAATGCCCTTGTAAGT
1 TAAAATGACCGTAATACCCCTGTAGGG
* *
34132399 TAAAATAATCGTAATACCCCTGTAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
** * *
34132426 TAAAATGACCAAAAAACCCCTATAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
* * *
34132453 TAAAATAACCGTAATGCCCCCGTAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
* * *
34132480 TAAAATGATCGTAATGCCCCTGTAAGG
1 TAAAATGACCGTAATACCCCTGTAGGG
** * * *
34132507 TAAAATGACCAAAAAACCCCTATAAGG
1 TAAAATGACCGTAATACCCCTGTAGGG
* * *
34132534 TAAAATAACCGTAATGCCCCTGTAAGG
1 TAAAATGACCGTAATACCCCTGTAGGG
* *
34132561 TAAAATGACCGTAATGCCCTTGTAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
* * *
34132588 TAAAATGACCATAATGCCCATGTAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
**
34132615 TAAAATGACCGTAATACCCCCATAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
* * * * *
34132642 TTAAATGACTGAAATACCCCTATAAGG
1 TAAAATGACCGTAATACCCCTGTAGGG
* * * *
34132669 TAAAATGATCATAATGCCCCTGGAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
34132696 TAAA
1 TAAA
34132700 TAACTATTTT
Statistics
Matches: 351, Mismatches: 83, Indels: 4
0.80 0.19 0.01
Matches are distributed among these distances:
26 3 0.01
27 344 0.98
28 4 0.01
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
TAAAATGACCGTAATACCCCTGTAGGG
Found at i:34132735 original size:26 final size:25
Alignment explanation
Indices: 34132683--34132759 Score: 68
Period size: 26 Copynumber: 3.0 Consensus size: 25
34132673 ATGATCATAA
* *
34132683 TGCCCCTGGAGGGTAAATAACTATTT
1 TGCCCCT-GAGTGTAAATGACTATTT
34132709 TGCCCCTCGAGTGTAAATGA-TATTTT
1 TGCCCCT-GAGTGTAAATGACTA-TTT
* *
34132735 TGTCCGTGA-TGTAAATGACTGATTT
1 TGCCCCTGAGTGTAAATGACT-ATTT
34132760 GTCTGTGATT
Statistics
Matches: 43, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
24 9 0.21
25 8 0.19
26 26 0.60
ACGTcount: A:0.25, C:0.17, G:0.22, T:0.36
Consensus pattern (25 bp):
TGCCCCTGAGTGTAAATGACTATTT
Found at i:34132752 original size:24 final size:23
Alignment explanation
Indices: 34132720--34132816 Score: 70
Period size: 24 Copynumber: 4.0 Consensus size: 23
34132710 GCCCCTCGAG
34132720 TGTAAATGAT-ATTTTTGTCCGTGA
1 TGTAAATGATGA--TTTGTCCGTGA
*
34132744 TGTAAATGACTGATTTGTCTGTGA
1 TGTAAATGA-TGATTTGTCCGTGA
* * **
34132768 TTTAAATGATTGATTTTTTTGTGA
1 TGTAAATGA-TGATTTGTCCGTGA
* * *
34132792 TTTAAATGACTAATTTGTCTGTGA
1 TGTAAATGA-TGATTTGTCCGTGA
34132816 T
1 T
34132817 TTGTATGACT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
24 60 0.97
25 1 0.02
26 1 0.02
ACGTcount: A:0.26, C:0.06, G:0.20, T:0.48
Consensus pattern (23 bp):
TGTAAATGATGATTTGTCCGTGA
Found at i:34132776 original size:48 final size:48
Alignment explanation
Indices: 34132722--34132818 Score: 135
Period size: 48 Copynumber: 2.0 Consensus size: 48
34132712 CCCTCGAGTG
*
34132722 TAAATGA-T-ATTTTTGTCCGTGATGTAAATGACTGATTTGTCTGTGATT
1 TAAATGATTGATTTTT-T-CGTGATGTAAATGACTAATTTGTCTGTGATT
* *
34132770 TAAATGATTGATTTTTTTGTGATTTAAATGACTAATTTGTCTGTGATT
1 TAAATGATTGATTTTTTCGTGATGTAAATGACTAATTTGTCTGTGATT
34132818 T
1 T
34132819 GTATGACTGA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
48 36 0.82
49 2 0.05
50 6 0.14
ACGTcount: A:0.26, C:0.06, G:0.19, T:0.49
Consensus pattern (48 bp):
TAAATGATTGATTTTTTCGTGATGTAAATGACTAATTTGTCTGTGATT
Found at i:34132817 original size:24 final size:24
Alignment explanation
Indices: 34132733--34132830 Score: 124
Period size: 24 Copynumber: 4.1 Consensus size: 24
34132723 AAATGATATT
* *
34132733 TTTGTCCGTGATGTAAATGACTGA
1 TTTGTCTGTGATTTAAATGACTGA
*
34132757 TTTGTCTGTGATTTAAATGATTGA
1 TTTGTCTGTGATTTAAATGACTGA
* * *
34132781 TTTTTTTGTGATTTAAATGACTAA
1 TTTGTCTGTGATTTAAATGACTGA
**
34132805 TTTGTCTGTGATTTGTATGACTGA
1 TTTGTCTGTGATTTAAATGACTGA
34132829 TT
1 TT
34132831 CTGAGCATGG
Statistics
Matches: 62, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 62 1.00
ACGTcount: A:0.23, C:0.07, G:0.20, T:0.49
Consensus pattern (24 bp):
TTTGTCTGTGATTTAAATGACTGA
Found at i:34132955 original size:27 final size:27
Alignment explanation
Indices: 34132899--34132956 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 27
34132889 GGAAGTACTG
*
34132899 TACTGGTGGCTCTGCCACAATCACTGT
1 TACTGGTGGCTCTGCCACAATCACTAT
34132926 TACTGGTGGCT-TGGCCACATAT-ACTAT
1 TACTGGTGGCTCT-GCCACA-ATCACTAT
34132953 TACT
1 TACT
34132957 AGCAACTTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 1 0.04
27 25 0.89
28 2 0.07
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.33
Consensus pattern (27 bp):
TACTGGTGGCTCTGCCACAATCACTAT
Found at i:34133057 original size:80 final size:80
Alignment explanation
Indices: 34132972--34133124 Score: 236
Period size: 80 Copynumber: 1.9 Consensus size: 80
34132962 CTTTGTTGCA
* * * * *
34132972 ATACTGTTGTTGGCAGCTTTACTGCGAT-ACTACTGATGGCTTTGTGCCGGTCATATTATCGTTA
1 ATACTGTTGCTGACAACTTTACTGCGATGA-TACTGACGGCTTTGTGCCGGTCATATTACCGTTA
34133036 CTGATGGCTTGCTGCG
65 CTGATGGCTTGCTGCG
*
34133052 ATACTGTTGCTGACAACTTTGCTGCGATGATACTGACGGCTTTGTGCCGGTCATATTACCGTTAC
1 ATACTGTTGCTGACAACTTTACTGCGATGATACTGACGGCTTTGTGCCGGTCATATTACCGTTAC
34133117 TGATGGCT
66 TGATGGCT
34133125 GTGTGCTGGT
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
80 65 0.98
81 1 0.02
ACGTcount: A:0.18, C:0.21, G:0.25, T:0.36
Consensus pattern (80 bp):
ATACTGTTGCTGACAACTTTACTGCGATGATACTGACGGCTTTGTGCCGGTCATATTACCGTTAC
TGATGGCTTGCTGCG
Found at i:34133130 original size:32 final size:32
Alignment explanation
Indices: 34133082--34133174 Score: 96
Period size: 32 Copynumber: 2.9 Consensus size: 32
34133072 GCTGCGATGA
* *
34133082 TACTGACGGCTTTGTGCCGGTCATATTACCGT
1 TACTGATGGCTTTGTGCCGGTCATATTACCGC
* * * * *
34133114 TACTGATGGCTGTGTGCTGGTCATGTCACTGC
1 TACTGATGGCTTTGTGCCGGTCATATTACCGC
* **
34133146 TACTGATGGCTTTATGCCAATCATATTAC
1 TACTGATGGCTTTGTGCCGGTCATATTAC
34133175 TGTACTTAGG
Statistics
Matches: 47, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
32 47 1.00
ACGTcount: A:0.18, C:0.23, G:0.24, T:0.35
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGGTCATATTACCGC
Found at i:34141313 original size:42 final size:42
Alignment explanation
Indices: 34141227--34141313 Score: 140
Period size: 42 Copynumber: 2.1 Consensus size: 42
34141217 TGCCGAGCTG
* *
34141227 TGTAACTTTTGAAATGGCCTCACACGCTCGTGTGTCAGGTCA
1 TGTAACTTTTGAAATGGCCTCACACGCCCGTGTGTCAGGCCA
34141269 TGTAACTTTTGAAATGGCCTCACACGCCCGTGT-TCCAGGCCA
1 TGTAACTTTTGAAATGGCCTCACACGCCCGTGTGT-CAGGCCA
34141311 TGT
1 TGT
34141314 GCTAGGTCGT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
41 1 0.02
42 41 0.98
ACGTcount: A:0.21, C:0.26, G:0.23, T:0.30
Consensus pattern (42 bp):
TGTAACTTTTGAAATGGCCTCACACGCCCGTGTGTCAGGCCA
Found at i:34148457 original size:23 final size:22
Alignment explanation
Indices: 34148430--34148472 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
34148420 AAATCAAAAC
34148430 TCTAAGATTACAGAATCATATGT
1 TCTAAGATTACA-AATCATATGT
*
34148453 TCTAAGATTACATATCATAT
1 TCTAAGATTACAAATCATAT
34148473 CTAAGATTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.37
Consensus pattern (22 bp):
TCTAAGATTACAAATCATATGT
Found at i:34148477 original size:19 final size:20
Alignment explanation
Indices: 34148430--34148487 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 20
34148420 AAATCAAAAC
*
34148430 TCTAAGATTACAGAATCATATGT
1 TCTAAGATTACA-TATCATA--T
34148453 TCTAAGATTACATATCATA-
1 TCTAAGATTACATATCATAT
*
34148472 TCTAAGATTTCATATC
1 TCTAAGATTACATATC
34148488 TTTGAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.45
22 6 0.18
23 12 0.36
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.38
Consensus pattern (20 bp):
TCTAAGATTACATATCATAT
Found at i:34160120 original size:27 final size:27
Alignment explanation
Indices: 34160080--34160222 Score: 196
Period size: 27 Copynumber: 5.3 Consensus size: 27
34160070 AATGACTGAA
*
34160080 TAAAATGATTGAATTACCCCCATAGGG
1 TAAAATGATCGAATTACCCCCATAGGG
*
34160107 TAAAATGATCGAATTACCCCTATAGGG
1 TAAAATGATCGAATTACCCCCATAGGG
* * * * *
34160134 TAGAATGACCGAATTACTCTCACAGGG
1 TAAAATGATCGAATTACCCCCATAGGG
*
34160161 TAAAATGATCGAATTACCCCCATAAGG
1 TAAAATGATCGAATTACCCCCATAGGG
* *
34160188 TAAAATGACCGAATTAGCCCCATAGGG
1 TAAAATGATCGAATTACCCCCATAGGG
34160215 TAAAATGA
1 TAAAATGA
34160223 CTATTATACC
Statistics
Matches: 99, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 99 1.00
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.23
Consensus pattern (27 bp):
TAAAATGATCGAATTACCCCCATAGGG
Found at i:34160238 original size:25 final size:28
Alignment explanation
Indices: 34160205--34160256 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 28
34160195 ACCGAATTAG
34160205 CCCCATAGG-G-TAAAATGACTATTATA
1 CCCCATAGGAGATAAAATGACTATTATA
* *
34160231 CCCC-TAGGAGATGAAATGACTGTTAT
1 CCCCATAGGAGATAAAATGACTATTAT
34160257 GACCTTATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 4 0.18
26 5 0.23
27 13 0.59
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (28 bp):
CCCCATAGGAGATAAAATGACTATTATA
Found at i:34163383 original size:43 final size:43
Alignment explanation
Indices: 34163314--34163431 Score: 121
Period size: 43 Copynumber: 2.7 Consensus size: 43
34163304 TTATGTGGGC
* * * *
34163314 AAACGCCGCTATAGAATATGACCTTTAGTGGCACTTCTCA-TAA
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGC-CTTCTCAGTAA
* * *
34163357 AAACGCCGCTAAAGAACATGATCTTTAACGGCGTTTTCAGTAA
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCCTTCTCAGTAA
* * * *
34163400 AAGCACCGCTAAAGATCATGTTCTTTAGCGGC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGC
34163432 GTTTGTGGGA
Statistics
Matches: 62, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
42 5 0.08
43 57 0.92
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGATCTTTAGCGGCCTTCTCAGTAA
Found at i:34163445 original size:43 final size:43
Alignment explanation
Indices: 34163362--34163487 Score: 130
Period size: 43 Copynumber: 2.9 Consensus size: 43
34163352 CATAAAAACG
* * * * *
34163362 CCGCTAAAGAACATGATCTTTAACGGCGTTT-TCAGTAAAAGCA
1 CCGCTAAAGATCATGTTCTTTAGCGGCGTTTGT-GGGAAAAGCA
**
34163405 CCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGGGAAAAGTG
1 CCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCA
* * *
34163448 CCGATAAATG-TCATGTTCTTTAGTGGTGTTTGTGGGAAAA
1 CCGCTAAA-GATCATGTTCTTTAGCGGCGTTTGTGGGAAAA
34163488 CGCCACTAAC
Statistics
Matches: 71, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
43 69 0.97
44 2 0.03
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (43 bp):
CCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCA
Found at i:34171381 original size:25 final size:25
Alignment explanation
Indices: 34171339--34171401 Score: 65
Period size: 25 Copynumber: 2.5 Consensus size: 25
34171329 TTGAGTGTTT
* * *
34171339 TCAGTATAGT-CTATCTATAGTAGTC
1 TCAGTATA-TACTACCTATAGCAATC
*
34171364 TCAGTATATACTACCTATAGCAATT
1 TCAGTATATACTACCTATAGCAATC
*
34171389 TCAGGATATACTA
1 TCAGTATATACTA
34171402 TAAAAAATAG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 1 0.03
25 31 0.97
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (25 bp):
TCAGTATATACTACCTATAGCAATC
Found at i:34174406 original size:18 final size:19
Alignment explanation
Indices: 34174383--34174421 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
34174373 CTTGGCTCAT
* *
34174383 TACAGTATCA-ATATTCAG
1 TACAGTAACAGATATGCAG
34174401 TACAGTAACAGATATGCAG
1 TACAGTAACAGATATGCAG
34174420 TA
1 TA
34174422 TCAAATCCTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.28
Consensus pattern (19 bp):
TACAGTAACAGATATGCAG
Found at i:34174789 original size:247 final size:247
Alignment explanation
Indices: 34174344--34174832 Score: 753
Period size: 247 Copynumber: 2.0 Consensus size: 247
34174334 TTAGCTCATT
* * *
34174344 ACAATATAGAAGCAGTCATGCATTTGGGCCTTGGCTCATTACAGTATCAATATTCAGTACAGTAA
1 ACAATACAGAAGCAGTCATGCATTTGGGCCTTGGCCCATTACAGTATCAATACTCAGTACAGTAA
* * *
34174409 CAGATATGCAGTATCAAATCCTACCCAACTAGCCTCAACACTCCAACTATGTCTAACCCTACACT
66 CAGATATGCAGTATCAAATCCTACCCAACCAGCCTCAACACTCCAACTACGTCCAACCCTACACT
* * *
34174474 CCATGTGGGGATATAATCAACCCACCCATCCCTACACTCCAAAACGTACCAAATCCGGCACTAGA
131 CCATGTGAGGATATAATCAACCCACCCATCCCTACACTCCAAAAAGGACCAAATCCGGCACTAGA
* *
34174539 TAGTGGTTTGCAGTTGAACTGTCAGTAAATTAGGCTCGAGGCCTTTCTCCAA
196 TAGTGGTTTGCAGCTGAACTGCCAGTAAATTAGGCTCGAGGCCTTTCTCCAA
* *
34174591 ACAATACATAAGCAGTCATGCATTTGGGCCTTGGCCCATTACAGTATCAATACTCAGTATAGTAA
1 ACAATACAGAAGCAGTCATGCATTTGGGCCTTGGCCCATTACAGTATCAATACTCAGTACAGTAA
* * * *
34174656 CAGATATGCAGTATCAAATCCTACCCAGCCAGCCTCTAGACTCCAACTCCGTCCAACCCTACACT
66 CAGATATGCAGTATCAAATCCTACCCAACCAGCCTCAACACTCCAACTACGTCCAACCCTACACT
* * ** **
34174721 CCATGTGAGGATATAATCAACCCACCCATCCTTACCCTCCAAAAAGGACTGAATGTGGCACTAGA
131 CCATGTGAGGATATAATCAACCCACCCATCCCTACACTCCAAAAAGGACCAAATCCGGCACTAGA
* *
34174786 TAGTGGTTTGCAGCTGAGCTGCCTGTAAATTAGGCTCGAGGCCTTTC
196 TAGTGGTTTGCAGCTGAACTGCCAGTAAATTAGGCTCGAGGCCTTTC
34174833 ACTGCACTTC
Statistics
Matches: 217, Mismatches: 25, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
247 217 1.00
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (247 bp):
ACAATACAGAAGCAGTCATGCATTTGGGCCTTGGCCCATTACAGTATCAATACTCAGTACAGTAA
CAGATATGCAGTATCAAATCCTACCCAACCAGCCTCAACACTCCAACTACGTCCAACCCTACACT
CCATGTGAGGATATAATCAACCCACCCATCCCTACACTCCAAAAAGGACCAAATCCGGCACTAGA
TAGTGGTTTGCAGCTGAACTGCCAGTAAATTAGGCTCGAGGCCTTTCTCCAA
Done.