Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D07
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56457815
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1765025 characters in sequence are not A, C, G, or T
File 121 of 189
Found at i:34182871 original size:43 final size:43
Alignment explanation
Indices: 34182810--34182892 Score: 148
Period size: 43 Copynumber: 1.9 Consensus size: 43
34182800 TTATATTCTC
34182810 TAAATGTTTATATAAGTTATGATAATCATTAACTTTAAATGTT
1 TAAATGTTTATATAAGTTATGATAATCATTAACTTTAAATGTT
* *
34182853 TAAATGTTTATGTAAGTTATGATTATCATTAACTTTAAAT
1 TAAATGTTTATATAAGTTATGATAATCATTAACTTTAAAT
34182893 ATGATTATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.39, C:0.05, G:0.10, T:0.47
Consensus pattern (43 bp):
TAAATGTTTATATAAGTTATGATAATCATTAACTTTAAATGTT
Found at i:34182942 original size:31 final size:31
Alignment explanation
Indices: 34182907--34183001 Score: 81
Period size: 31 Copynumber: 3.2 Consensus size: 31
34182897 TTATTTATTT
34182907 AATTAATCAAAAATTAAATAATTATTCATAA
1 AATTAATCAAAAATTAAATAATTATTCATAA
* * * * **
34182938 AATT-ATTATGAAA-T--ATGATTATTTATTT
1 AATTAATCA-AAAATTAAATAATTATTCATAA
* *
34182966 AATTAATCGAAAATTAAATAGTTATTCATAA
1 AATTAATCAAAAATTAAATAATTATTCATAA
34182997 AATTA
1 AATTA
34183002 TTATGAAATA
Statistics
Matches: 45, Mismatches: 14, Indels: 10
0.65 0.20 0.14
Matches are distributed among these distances:
28 17 0.38
29 3 0.07
30 4 0.09
31 21 0.47
ACGTcount: A:0.51, C:0.04, G:0.04, T:0.41
Consensus pattern (31 bp):
AATTAATCAAAAATTAAATAATTATTCATAA
Found at i:34182961 original size:59 final size:59
Alignment explanation
Indices: 34182889--34183037 Score: 280
Period size: 59 Copynumber: 2.5 Consensus size: 59
34182879 CATTAACTTT
*
34182889 AAATATGATTATTTATTTAATTAATCAAAAATTAAATAATTATTCATAAAATTATTATG
1 AAATATGATTATTTATTTAATTAATCGAAAATTAAATAATTATTCATAAAATTATTATG
*
34182948 AAATATGATTATTTATTTAATTAATCGAAAATTAAATAGTTATTCATAAAATTATTATG
1 AAATATGATTATTTATTTAATTAATCGAAAATTAAATAATTATTCATAAAATTATTATG
34183007 AAATATGATTATTTATTTAATTAATCGAAAA
1 AAATATGATTATTTATTTAATTAATCGAAAA
34183038 CTAATTAACT
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 88 1.00
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.44
Consensus pattern (59 bp):
AAATATGATTATTTATTTAATTAATCGAAAATTAAATAATTATTCATAAAATTATTATG
Found at i:34183729 original size:22 final size:23
Alignment explanation
Indices: 34183695--34183739 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
34183685 GAAAAAAAGT
*
34183695 TAATGATATAACCCAAAAAATAA
1 TAATAATATAACCCAAAAAATAA
*
34183718 TAATAATA-AACCTAAAAAATAA
1 TAATAATATAACCCAAAAAATAA
34183740 CCCAAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.64, C:0.11, G:0.02, T:0.22
Consensus pattern (23 bp):
TAATAATATAACCCAAAAAATAA
Found at i:34184067 original size:25 final size:24
Alignment explanation
Indices: 34183995--34184073 Score: 70
Period size: 25 Copynumber: 3.2 Consensus size: 24
34183985 ATCGATACAA
*
34183995 TAGAGGAGTGTCGACGATGATGCGG
1 TAGAGGAGTGTCGAAG-TGATGCGG
* * *
34184020 CAAAGGAGTG-CTGAAGGTAATGCGG
1 TAGAGGAGTGTC-GAA-GTGATGCGG
*
34184045 TAGAGGAGTGTCGATAGTGATGCAG
1 TAGAGGAGTGTCGA-AGTGATGCGG
34184070 TAGA
1 TAGA
34184074 AGGGACAATC
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
24 1 0.02
25 38 0.90
26 3 0.07
ACGTcount: A:0.29, C:0.10, G:0.41, T:0.20
Consensus pattern (24 bp):
TAGAGGAGTGTCGAAGTGATGCGG
Found at i:34184317 original size:41 final size:41
Alignment explanation
Indices: 34184258--34184336 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
34184248 TTTATGAGAA
* * * *
34184258 AAACGCCATTACTACTTTACCTTTTGTGGTGTTTTTCTTAT
1 AAACGCCACTACTACTTTACCTATTGCGGCGTTTTTCTTAT
* *
34184299 AAACGCCGCTACTTCTTTACCTATTGCGGCGTTTTTCT
1 AAACGCCACTACTACTTTACCTATTGCGGCGTTTTTCT
34184337 GTTAGCGCCA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.18, C:0.24, G:0.14, T:0.44
Consensus pattern (41 bp):
AAACGCCACTACTACTTTACCTATTGCGGCGTTTTTCTTAT
Found at i:34185081 original size:10 final size:10
Alignment explanation
Indices: 34185066--34185108 Score: 56
Period size: 10 Copynumber: 4.5 Consensus size: 10
34185056 GATTAATGAG
34185066 ATAAAAATAA
1 ATAAAAATAA
34185076 ATAAAAATAA
1 ATAAAAATAA
34185086 AT--AAATAA
1 ATAAAAATAA
34185094 ATAAGAAA-AA
1 ATAA-AAATAA
34185104 ATAAA
1 ATAAA
34185109 CAAACGACAA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 8 0.27
9 1 0.03
10 18 0.60
11 3 0.10
ACGTcount: A:0.79, C:0.00, G:0.02, T:0.19
Consensus pattern (10 bp):
ATAAAAATAA
Found at i:34185093 original size:18 final size:18
Alignment explanation
Indices: 34185070--34185108 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
34185060 AATGAGATAA
34185070 AAATAAATAA-AAATAAAT
1 AAATAAATAAGAAA-AAAT
34185088 AAATAAATAAGAAAAAAT
1 AAATAAATAAGAAAAAAT
34185106 AAA
1 AAA
34185109 CAAACGACAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (18 bp):
AAATAAATAAGAAAAAAT
Found at i:34186313 original size:27 final size:26
Alignment explanation
Indices: 34186274--34186338 Score: 60
Period size: 27 Copynumber: 2.5 Consensus size: 26
34186264 CATTCATTAA
* * *
34186274 AAAAAATAAATATGTACATAAA-AAC
1 AAAAATTACATATATACATAAATAAC
* *
34186299 AACAAATGTACATATATATATAAATAAT
1 AA-AAAT-TACATATATACATAAATAAC
34186327 AAAAATTACATA
1 AAAAATTACATA
34186339 AAAAATAATT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
25 2 0.06
26 9 0.28
27 17 0.53
28 4 0.12
ACGTcount: A:0.63, C:0.08, G:0.03, T:0.26
Consensus pattern (26 bp):
AAAAATTACATATATACATAAATAAC
Found at i:34187120 original size:27 final size:27
Alignment explanation
Indices: 34187082--34187149 Score: 118
Period size: 27 Copynumber: 2.5 Consensus size: 27
34187072 AATGAAGAGA
*
34187082 AAAAGAAAAAAAACAGTAGATTAAAAT
1 AAAACAAAAAAAACAGTAGATTAAAAT
34187109 AAAACAAAAAAAACAGTAGATTAAAAT
1 AAAACAAAAAAAACAGTAGATTAAAAT
34187136 AAAACAAAATAAAA
1 AAAACAAAA-AAAA
34187150 AAATGTAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 35 0.90
28 4 0.10
ACGTcount: A:0.74, C:0.06, G:0.07, T:0.13
Consensus pattern (27 bp):
AAAACAAAAAAAACAGTAGATTAAAAT
Found at i:34188057 original size:128 final size:129
Alignment explanation
Indices: 34187870--34188121 Score: 310
Period size: 128 Copynumber: 2.0 Consensus size: 129
34187860 AAATAAATTT
* * * * *
34187870 GATGCGGTCTACTATACTGTAATTTTAGAGAGATAAGATCCATCATTCTGATCCACTCCACTACA
1 GATGCGATCTACTATACTGTAACTTCAGAGAGATAAGATCCAACATTCTAATCCACTCCACTACA
* * ** * * *
34187935 ACTTTAGGAAGGTAGGATTTATTTA-TTTAGTCTGCTCCACTGCAACTTCGGGGAGATAAGACTA
66 ACTTCAGGAAGATAGGA-TTATCGACTTTAATATGCTCCACTGCAACTTCAGGGAGATAAGACTA
* ** * * *
34187999 GATGCGATCTACTCT-CTGTAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCA
1 GATGCGATCTACTATACTGTAACTTCAGAGAGATAAGATCCAACATTCTAATCCACTCCACTACA
*
34188063 ACTTCAGGGAGATAGGATTATCGACTTTAATATGCTCCACTGCAACTTCAGGGAGATAA
66 ACTTCAGGAAGATAGGATTATCGACTTTAATATGCTCCACTGCAACTTCAGGGAGATAA
34188122 TATTTGCCAT
Statistics
Matches: 103, Mismatches: 19, Indels: 3
0.82 0.15 0.02
Matches are distributed among these distances:
127 5 0.05
128 85 0.83
129 13 0.13
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30
Consensus pattern (129 bp):
GATGCGATCTACTATACTGTAACTTCAGAGAGATAAGATCCAACATTCTAATCCACTCCACTACA
ACTTCAGGAAGATAGGATTATCGACTTTAATATGCTCCACTGCAACTTCAGGGAGATAAGACTA
Found at i:34188189 original size:50 final size:50
Alignment explanation
Indices: 34188132--34188291 Score: 142
Period size: 50 Copynumber: 3.2 Consensus size: 50
34188122 TATTTGCCAT
* * *
34188132 CTTCAATCTGACTAACTGGAATATCAGGGAAACAAGATTCGCCGTCGTAG
1 CTTCAATCTGATTAACTGCAATGTCAGGGAAACAAGATTCGCCGTCGTAG
* ** * * * * * * *
34188182 CTTCAATCT-ATTCCACTATACTGCCAAGGAAATAAGATTCACCGTTGTGG
1 CTTCAATCTGATT-AACTGCAATGTCAGGGAAACAAGATTCGCCGTCGTAG
** * **
34188232 CTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTCGCCGTCGTAG
1 CTTCAATCTGATTAACTGCAATGTCAGGGAAACAAGATTCGCCGTCGTAG
34188282 CTTCAATCTG
1 CTTCAATCTG
34188292 TTCCATTGCA
Statistics
Matches: 81, Mismatches: 27, Indels: 4
0.72 0.24 0.04
Matches are distributed among these distances:
49 2 0.02
50 77 0.95
51 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (50 bp):
CTTCAATCTGATTAACTGCAATGTCAGGGAAACAAGATTCGCCGTCGTAG
Found at i:34188300 original size:50 final size:50
Alignment explanation
Indices: 34188156--34188302 Score: 150
Period size: 50 Copynumber: 2.9 Consensus size: 50
34188146 ACTGGAATAT
* ** *
34188156 CAGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTATTCCACTATACTGC
1 CAGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTATTCCATTGCAATGC
* * * * * * ** *
34188206 CAAGGAAATAAGATTCACCGTTGTGGCTTCAATCTTTTTAATTGCAATGT
1 CAGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTATTCCATTGCAATGC
** *
34188256 TGGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCATTGCAA
1 CAGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTATTCCATTGCAA
34188303 CATCAAGGCG
Statistics
Matches: 74, Mismatches: 23, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
50 74 1.00
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (50 bp):
CAGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTATTCCATTGCAATGC
Found at i:34188422 original size:44 final size:44
Alignment explanation
Indices: 34188372--34189724 Score: 1100
Period size: 44 Copynumber: 31.8 Consensus size: 44
34188362 ATCTGTTATT
* * **
34188372 TTCAACCTACTCCACTACTG-CTCAGGGAGATAGCGTTCATGATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAG-GTTCACAATC
* **
34188416 TTCAACCTATTCCACTGTTGACT-AGGGAGATAGGACCTACAATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGGTTC-ACAATC
* * * * *
34188460 TTCAATCTATTCCACTGCTG-CCCAGAGAGATAGAATTCTCAATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAG-GTTCACAATC
*
34188504 TTCAACCTATTCCACTACTGAC-CAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGG-TTCACAATC
* * *
34188548 TTTAACCTATCCCACTGCTGTC-CAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGG-TTCACAATC
* *
34188592 TTTAACCTATTCCACTGCTGACT-AGGGAGATAGG---GC--TC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGGTTCACAATC
* * * * *
34188630 TTTAATCTATTCCACTGCTGCCT-AGGGAGATAGAATTCTCAATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAG-GTTCACAATC
*
34188674 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATTTACAATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGG-TTCACAATC
* * *
34188718 TTTAACCTATTCCACTACTGTC-CAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGG-TTCACAATC
* *
34188762 TTTAACCTATTCCACTGCTGAC-CAGGGAGATAGG---GC--TC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGGTTCACAATC
* * * ** *
34188800 TTTAATCTATTCCACTGCTGCCT-AGGGAGATAAAATTCTCAATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGAT-AGGTTCACAATC
* * *
34188844 TTAAACCTATTCCACTGCTGAC-CAAGAAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGG-TTCACAATC
* *
34188888 TTTAACCTATTCCACTGCTGTC-CAGGGAGATAGG---AC--TC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGGTTCACAATC
* * * * *
34188926 TTTAATCTATTCCACTGCT-AC-CTAGGGAGATAGAATTCTCATTC
1 TTCAACCTATTCCACTGCTGACTC-AGGGAGATAG-GTTCACAATC
* *
34188970 TTCAGCCTATTCCACCGCTGAC-CAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGG-TTCACAATC
* * *
34189014 TTTAACCTATTCCACTGCTGTC-CAGGGAGATAGCATTCACAATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAG-GTTCACAATC
* *
34189058 TTTAACCTATTCCACTGCTGAC-CAGGGAGATAGG---GC--TC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGGTTCACAATC
* * * * *
34189096 TTTAATCTATTCCACTGCTG-CTTAGGGAGATAGAATTCTCAATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAG-GTTCACAATC
*
34189140 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATTTACAATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGG-TTCACAATC
* * * *
34189184 TTTAACATATTCCACTTCTGTCT-AGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGG-TTCACAATC
* *
34189228 TTTAACCTATTCCACTGCTGAC-CAGGGAGATAGG---GC--TC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGGTTCACAATC
* * * * ** *
34189266 TTTAATCTATTCCACTGTTGCCT-AGGGAGATAAAATTCTCAATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGAT-AGGTTCACAATC
* *
34189310 TTCAACCTATTCCACTGCTGAC-CTGGGAGATAGGATTCACAATA
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGG-TTCACAATC
* * * *
34189354 TTTAACCTATTCGACTGCTGTC-CAGGGAGATAGG---GC--TC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGGTTCACAATC
* * *
34189392 TTTAATCTATTCCACTGCTGACT-AGGGAGATAGGATTCTCAATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGG-TTCACAATC
*
34189436 TTCAACCTATTTCACTGCTGACT-AGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGG-TTCACAATC
* * *
34189480 TTTAACTTATTCCACTGCTGAC-CAGGGAGATAGG---GC--TC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGGTTCACAATC
* ** * * *
34189518 TTTAATTTATTCCACTGCTG-CCCAGGGAGATAGAATTCTCAATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAG-GTTCACAATC
*
34189562 TTCAACCTATTCCACTACTGAC-CAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGG-TTCACAATC
* * * *
34189606 TTTAACCTATTCCTCTGTTGTC-CAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGG-TTCACAATC
* * *
34189650 TTTAACCTATTCCACT-TTGTC-CAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACTCAGGGAGATAGG-TTCACAATC
34189693 -TCTAACCTATTCCACTGCTGAC-CAGGGAGATA
1 TTC-AACCTATTCCACTGCTGACTCAGGGAGATA
34189725 TGGCTGGGTT
Statistics
Matches: 1086, Mismatches: 150, Indels: 146
0.79 0.11 0.11
Matches are distributed among these distances:
37 4 0.00
38 216 0.20
39 2 0.00
40 8 0.01
42 8 0.01
43 45 0.04
44 794 0.73
45 9 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (44 bp):
TTCAACCTATTCCACTGCTGACTCAGGGAGATAGGTTCACAATC
Found at i:34188682 original size:170 final size:172
Alignment explanation
Indices: 34188375--34189724 Score: 1396
Period size: 170 Copynumber: 7.9 Consensus size: 172
34188365 TGTTATTTTC
* * ** * *
34188375 AACCTACTCCACTACTG-CTCAGGGAGATAGCGTTCATGATCTTCAACCTATTCCACTGTTGACT
1 AACCTATTCCACTGCTGAC-CAGGGAGATAG-GTTCACAATCTTTAACCTATTCCACTGCTGACT
* * * * *
34188439 AGGGAGATAGGACCTACAATCTTCAATCTATTCCACTGCTGCCCAGAGAGATAGAATTCTCAATC
64 AGGGAGATAGG-TCT-C-ATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCTCAATC
*
34188504 TTCAACCTATTCCACTACTGACCAGGGAGATAGGATTCACAATCTTT
126 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTT
* *
34188551 AACCTATCCCACTGCTGTCCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGACTA
1 AACCTATTCCACTGCTGACCAGGGAGATAGG-TTCACAATCTTTAACCTATTCCACTGCTGACTA
* * *
34188616 GGGAGATAGGGCTC-T-TT-AATCTATTCCACTGCTG-CCTAGGGAGATAGAATTCTCAATCTTC
65 GGGAGATAGGTCTCATCTTCAACCTATTCCACTGCTGACC-AGGGAGATAGGATTCTCAATCTTC
*
34188677 AACCTATTCCACTGCTGACCAGGGAGATAGGATTTACAATCTTT
129 AACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTT
* * *
34188721 AACCTATTCCACTACTGTCCAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGACCA
1 AACCTATTCCACTGCTGACCAGGGAGATAGG-TTCACAATCTTTAACCTATTCCACTGCTGACTA
* * ** *
34188786 GGGAGATAGGGCTC-T-TT-AATCTATTCCACTGCTG-CCTAGGGAGATAAAATTCTCAATCTTA
65 GGGAGATAGGTCTCATCTTCAACCTATTCCACTGCTGACC-AGGGAGATAGGATTCTCAATCTTC
* *
34188847 AACCTATTCCACTGCTGACCAAGAAGATAGGATTCACAATCTTT
129 AACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTT
* *
34188891 AACCTATTCCACTGCTGTCCAGGGAGATAGG---AC--TCTTTAATCTATTCCACTGCT-ACCTA
1 AACCTATTCCACTGCTGACCAGGGAGATAGGTTCACAATCTTTAACCTATTCCACTGCTGA-CTA
* * * *
34188950 GGGAGATAGAATTCTCATTCTTCAGCCTATTCCACCGCTGACCAGGGAGATAGGATTCACAATCT
65 GGGAGATAG--GTCTCA-TCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCTCAATCT
* * *
34189015 TTAACCTATTCCACTGCTGTCCAGGGAGATAGCATTCACAATCTTT
127 TCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTT
* *
34189061 AACCTATTCCACTGCTGACCAGGGAGATAGG---GC--TCTTTAATCTATTCCACTGCTG-CTTA
1 AACCTATTCCACTGCTGACCAGGGAGATAGGTTCACAATCTTTAACCTATTCCACTGCTGAC-TA
*
34189120 GGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATT-TACAATC
65 GGGAGATAG--GTCTC-ATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCT-CAATC
* * * * *
34189184 TTTAACATATTCCACTTCTGTCTAGGGAGATAGGATTCACAATCTTT
126 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTT
* * * *
34189231 AACCTATTCCACTGCTGACCAGGGAGATAGG---GC--TCTTTAATCTATTCCACTGTTGCCTAG
1 AACCTATTCCACTGCTGACCAGGGAGATAGGTTCACAATCTTTAACCTATTCCACTGCTGACTAG
** * * *
34189291 GGAGATAAAATTCTCAATCTTCAACCTATTCCACTGCTGACCTGGGAGATAGGATTCACAATATT
66 GGAGAT--AGGTCTC-ATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCTCAATCTT
* * * *
34189356 TAACCTATTCGACTGCTGTCCAGGGAGATAGG----GC--TCTTT
128 CAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTT
* * * * *
34189395 AATCTATTCCACTGCTGACTAGGGAGATAGGATTCTCAATCTTCAACCTATTTCACTGCTGACTA
1 AACCTATTCCACTGCTGACCAGGGAGATAGG-TTCACAATCTTTAACCTATTCCACTGCTGACTA
* * * *
34189460 GGGAGATAGGATTCACAATCTTTAACTTATTCCACTGCTGACCAGGGAGATAGG--GCTC--T-T
65 GGGAGATAGG--TCTC-ATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCTCAATCT
** * * * *
34189520 T-AATTTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTC
127 TCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTT
* * * * *
34189565 AACCTATTCCACTACTGACCAGGGAGATAGGATTCACAATCTTTAACCTATTCCTCTGTTGTCCA
1 AACCTATTCCACTGCTGACCAGGGAGATAGG-TTCACAATCTTTAACCTATTCCACTGCTGACTA
* * * * *
34189630 GGGAGATAGGATTCACAATCTTTAACCTATTCCACT-TTGTCCAGGGAGATAGGATTCACAATC-
65 GGGAGATAGG--TCTC-ATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCTCAATCT
34189693 TCTAACCTATTCCACTGCTGACCAGGGAGATA
127 TC-AACCTATTCCACTGCTGACCAGGGAGATA
34189725 TGGCTGGGTT
Statistics
Matches: 1039, Mismatches: 95, Indels: 81
0.86 0.08 0.07
Matches are distributed among these distances:
163 1 0.00
164 91 0.09
165 2 0.00
166 7 0.01
168 6 0.01
169 20 0.02
170 805 0.77
171 8 0.01
172 2 0.00
173 2 0.00
174 1 0.00
175 29 0.03
176 64 0.06
177 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (172 bp):
AACCTATTCCACTGCTGACCAGGGAGATAGGTTCACAATCTTTAACCTATTCCACTGCTGACTAG
GGAGATAGGTCTCATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCTCAATCTTCAA
CCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTT
Found at i:34188699 original size:126 final size:126
Alignment explanation
Indices: 34188375--34189724 Score: 1356
Period size: 126 Copynumber: 10.6 Consensus size: 126
34188365 TGTTATTTTC
* * * *
34188375 AACCTACTCCACTACTG-CTCAGGGAGATAGCG-TTCAT-GATCTTCAACCTATTCCACTGTTGA
1 AACCTATTCCACTGCTGAC-CAGGGAGATAG-GATTC-TCAATCTTCAACCTATTCCACTGCTGA
* * * * * * *
34188437 CTAGGGAGATAGGA-CCTACAATCTTCAATCTATTCCACTGCTGCCCAGAGAGATAGAATTCTCA
63 CCAGGGAGATAGGATTC-ACAATCTTTAACCTATTCCACTGCTGACCAGGGAGATAGGA--CTC-
34188501 ATCTT
124 -T-TT
* * * * *
34188506 CAACCTATTCCACTACTGACCAGGGAGATAGGATTCACAATCTTTAACCTATCCCACTGCTGTCC
1 -AACCTATTCCACTGCTGACCAGGGAGATAGGATTCTCAATCTTCAACCTATTCCACTGCTGACC
* *
34188571 AGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGACTAGGGAGATAGGGCTCTTT
65 AGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGACCAGGGAGATAGGACTCTTT
* *
34188633 AATCTATTCCACTGCTG-CCTAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTGCTGACC
1 AACCTATTCCACTGCTGACC-AGGGAGATAGGATTCTCAATCTTCAACCTATTCCACTGCTGACC
* * *
34188697 AGGGAGATAGGATTTACAATCTTTAACCTATTCCACTACTGTCCAGGGAGATAGGATTCACAATC
65 AGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGACCAGGGAGATAGG----AC--TC
34188762 TTT
124 TTT
* *
34188765 AACCTATTCCACTGCTGACCAGGGAGATAGG--GCTC--T-TT-AATCTATTCCACTGCTG-CCT
1 AACCTATTCCACTGCTGACCAGGGAGATAGGATTCTCAATCTTCAACCTATTCCACTGCTGACC-
** * * * *
34188823 AGGGAGATAAAATTCTCAATCTTAAACCTATTCCACTGCTGACCAAGAAGATAGGATTCACAATC
65 AGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGACCAGGGAGATAGG----AC--TC
34188888 TTT
124 TTT
* *
34188891 AACCTATTCCACTGCTGTCCAGGGAGATAGGA--CTC--T-TT-AATCTATTCCACTGCT-ACCT
1 AACCTATTCCACTGCTGACCAGGGAGATAGGATTCTCAATCTTCAACCTATTCCACTGCTGACC-
* * * * * *
34188949 AGGGAGATAGAATTCTCATTCTTCAGCCTATTCCACCGCTGACCAGGGAGATAGGATTCACAATC
65 AGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGACCAGGGAGATAGG----AC--TC
34189014 TTT
124 TTT
* * * *
34189017 AACCTATTCCACTGCTGTCCAGGGAGATAGCATTCACAATCTTTAACCTATTCCACTGCTGACCA
1 AACCTATTCCACTGCTGACCAGGGAGATAGGATTCTCAATCTTCAACCTATTCCACTGCTGACCA
* * * *
34189082 GGGAGATAGG----GC--TCTTTAATCTATTCCACTGCTG-CTTAGGGAGATAGAATTCTCAATC
66 GGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGAC-CAGGGAGATAGGA--CTC--T-
34189140 TT
125 TT
* * * *
34189142 CAACCTATTCCACTGCTGACCAGGGAGATAGGATT-TACAATCTTTAACATATTCCACTTCTGTC
1 -AACCTATTCCACTGCTGACCAGGGAGATAGGATTCT-CAATCTTCAACCTATTCCACTGCTGAC
* *
34189206 TAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGACCAGGGAGATAGGGCTCTTT
64 CAGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGACCAGGGAGATAGGACTCTTT
* * **
34189269 AATCTATTCCACTGTTG-CCTAGGGAGATAAAATTCTCAATCTTCAACCTATTCCACTGCTGACC
1 AACCTATTCCACTGCTGACC-AGGGAGATAGGATTCTCAATCTTCAACCTATTCCACTGCTGACC
* * * * *
34189333 TGGGAGATAGGATTCACAATATTTAACCTATTCGACTGCTGTCCAGGGAGATAGGGCTCTTT
65 AGGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGACCAGGGAGATAGGACTCTTT
* * * *
34189395 AATCTATTCCACTGCTGACTAGGGAGATAGGATTCTCAATCTTCAACCTATTTCACTGCTGACTA
1 AACCTATTCCACTGCTGACCAGGGAGATAGGATTCTCAATCTTCAACCTATTCCACTGCTGACCA
* *
34189460 GGGAGATAGGATTCACAATCTTTAACTTATTCCACTGCTGACCAGGGAGATAGGGCTCTTT
66 GGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGACCAGGGAGATAGGACTCTTT
** * * *
34189521 AATTTATTCCACTGCTGCCCAGGGAGATAGAATTCTCAATCTTCAACCTATTCCACTACTGACCA
1 AACCTATTCCACTGCTGACCAGGGAGATAGGATTCTCAATCTTCAACCTATTCCACTGCTGACCA
* * *
34189586 GGGAGATAGGATTCACAATCTTTAACCTATTCCTCTGTTGTCCAGGGAGATAGGATTCACAATCT
66 GGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGACCAGGGAGATAGG----AC--TCT
34189651 TT
125 TT
* * *
34189653 AACCTATTCCACT-TTGTCCAGGGAGATAGGATTCACAATC-TCTAACCTATTCCACTGCTGACC
1 AACCTATTCCACTGCTGACCAGGGAGATAGGATTCTCAATCTTC-AACCTATTCCACTGCTGACC
34189716 AGGGAGATA
65 AGGGAGATA
34189725 TGGCTGGGTT
Statistics
Matches: 1056, Mismatches: 115, Indels: 95
0.83 0.09 0.08
Matches are distributed among these distances:
122 3 0.00
124 2 0.00
125 9 0.01
126 751 0.71
127 8 0.01
128 6 0.01
130 15 0.01
131 54 0.05
132 200 0.19
133 8 0.01
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (126 bp):
AACCTATTCCACTGCTGACCAGGGAGATAGGATTCTCAATCTTCAACCTATTCCACTGCTGACCA
GGGAGATAGGATTCACAATCTTTAACCTATTCCACTGCTGACCAGGGAGATAGGACTCTTT
Found at i:34189865 original size:88 final size:88
Alignment explanation
Indices: 34189743--34189960 Score: 366
Period size: 88 Copynumber: 2.5 Consensus size: 88
34189733 TTCATCAATA
* *
34189743 TGCTTCGTTGTCGATGCAGGAAGGCAAGATCTGCTATTTTTAGCCTGCTCCGCTGCAA-CCTAGG
1 TGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATTTTTAGCATGCTCCGCTGCAATCC-AGG
*
34189807 GAGGCAAGGCTGGTGTATTCGATC
65 GAGGCAAGGCTGGTGTATTAGATC
*
34189831 TGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATTTTTAGCATGCTCCGCTGCAATCCATGG
1 TGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATTTTTAGCATGCTCCGCTGCAATCCAGGG
*
34189896 AGGCAAGGCTGGTGTCTTAGATC
66 AGGCAAGGCTGGTGTATTAGATC
*
34189919 TGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTA
1 TGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATTTTTA
34189961 CCGATCTGCT
Statistics
Matches: 123, Mismatches: 6, Indels: 2
0.94 0.05 0.02
Matches are distributed among these distances:
88 121 0.98
89 2 0.02
ACGTcount: A:0.20, C:0.22, G:0.29, T:0.29
Consensus pattern (88 bp):
TGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATTTTTAGCATGCTCCGCTGCAATCCAGGG
AGGCAAGGCTGGTGTATTAGATC
Found at i:34189969 original size:48 final size:47
Alignment explanation
Indices: 34189743--34189970 Score: 153
Period size: 44 Copynumber: 5.1 Consensus size: 47
34189733 TTCATCAATA
* *
34189743 TGCTTCGTTGTCGATGCAGGAAGGCAAGATCTGCTATTTTTA-G-CC
1 TGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATTTTTACGATC
* ** * * * * *
34189788 TGCTCCGCTG-C-AACCTAGGGAGGCAAG-GCTGGT-GTATT-CGATC
1 TGCTTCGCTGTCGATGC-AGGAAGGCAAGATCTGCTATTTTTACGATC
34189831 TGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATTTTTA-G--C
1 TGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATTTTTACGATC
* * * * * * *
34189875 ATGCTCCGCTG-CAATCCATGG-AGGCAAG-GCTGGT-GTCTTA-GATC
1 -TGCTTCGCTGTCGATGCA-GGAAGGCAAGATCTGCTATTTTTACGATC
*
34189919 TGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTACCGATC
1 TGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATTTTTA-CGATC
34189967 TGCT
1 TGCT
34189971 CTCTAGGGAA
Statistics
Matches: 132, Mismatches: 33, Indels: 33
0.67 0.17 0.17
Matches are distributed among these distances:
42 9 0.07
43 31 0.23
44 47 0.36
45 29 0.22
46 8 0.06
48 8 0.06
ACGTcount: A:0.19, C:0.23, G:0.29, T:0.29
Consensus pattern (47 bp):
TGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATTTTTACGATC
Found at i:34196952 original size:21 final size:21
Alignment explanation
Indices: 34196917--34196969 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
34196907 TCATATCTTT
34196917 CAAGATTGC--ATATCATATC
1 CAAGATTGCATATATCATATC
34196936 CAAGATTGCATATATCATATC
1 CAAGATTGCATATATCATATC
*
34196957 TAAGATTGCATAT
1 CAAGATTGCATAT
34196970 CCTTGAAGAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 9 0.29
21 22 0.71
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (21 bp):
CAAGATTGCATATATCATATC
Found at i:34205908 original size:43 final size:44
Alignment explanation
Indices: 34205849--34206002 Score: 181
Period size: 43 Copynumber: 3.6 Consensus size: 44
34205839 AGTGATACAG
*
34205849 GGAATTAGCACATAGCAACC-CCTTTCACAATCAAAGATACGGT
1 GGAATCAGCACATAGCAACCACCTTTCACAATCAAAGATACGGT
* * * **
34205892 AGAATCAGCACTTAGCAACCACCTTT-ACATTCAGTGATACGG-
1 GGAATCAGCACATAGCAACCACCTTTCACAATCAAAGATACGGT
* * *
34205934 GGAATTAGCACATAGCAACC-CCTTTCACAACCAAATATACGGT
1 GGAATCAGCACATAGCAACCACCTTTCACAATCAAAGATACGGT
* *
34205977 GGAATCAACACTTAGCAACCACCTTT
1 GGAATCAGCACATAGCAACCACCTTT
34206003 AGAGTCAATA
Statistics
Matches: 90, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
41 5 0.06
42 28 0.31
43 47 0.52
44 10 0.11
ACGTcount: A:0.36, C:0.27, G:0.15, T:0.22
Consensus pattern (44 bp):
GGAATCAGCACATAGCAACCACCTTTCACAATCAAAGATACGGT
Found at i:34205954 original size:85 final size:85
Alignment explanation
Indices: 34205812--34206003 Score: 314
Period size: 85 Copynumber: 2.3 Consensus size: 85
34205802 CTTAGTGGAT
*
34205812 TCAGCACTTAGCAACAACC-TTAAATTCAGTGATACAGGGAATTAGCACATAGCAACCCCTTTCA
1 TCAGCACTTAGCAACCACCTTTAAATTCAGTGATACAGGGAATTAGCACATAGCAACCCCTTTCA
*
34205876 CAATCAAAGATACGGTAGAA
66 CAACCAAAGATACGGTAGAA
* *
34205896 TCAGCACTTAGCAACCACCTTTACATTCAGTGATACGGGGAATTAGCACATAGCAACCCCTTTCA
1 TCAGCACTTAGCAACCACCTTTAAATTCAGTGATACAGGGAATTAGCACATAGCAACCCCTTTCA
* *
34205961 CAACCAAATATACGGTGGAA
66 CAACCAAAGATACGGTAGAA
*
34205981 TCAACACTTAGCAACCACCTTTA
1 TCAGCACTTAGCAACCACCTTTA
34206004 GAGTCAATAA
Statistics
Matches: 100, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
84 18 0.18
85 82 0.82
ACGTcount: A:0.36, C:0.27, G:0.15, T:0.22
Consensus pattern (85 bp):
TCAGCACTTAGCAACCACCTTTAAATTCAGTGATACAGGGAATTAGCACATAGCAACCCCTTTCA
CAACCAAAGATACGGTAGAA
Found at i:34206021 original size:85 final size:85
Alignment explanation
Indices: 34205816--34206038 Score: 277
Period size: 85 Copynumber: 2.6 Consensus size: 85
34205806 GTGGATTCAG
* * * * * * *
34205816 CACTTAGCAACAACC-TTAAATTCAGTGATACAGGGAATTAGCACATAGCAACCCCTTTCACAAT
1 CACTTAGCAACCACCTTTACAGTCAATAATACGGGGAATTAGCACATAGCAACCCCTTTCACAAC
*
34205880 CAAAGATACGGTAGAATCAG
66 CAAAGATACGGTAGAATCAA
* * *
34205900 CACTTAGCAACCACCTTTACATTCAGTGATACGGGGAATTAGCACATAGCAACCCCTTTCACAAC
1 CACTTAGCAACCACCTTTACAGTCAATAATACGGGGAATTAGCACATAGCAACCCCTTTCACAAC
* *
34205965 CAAATATACGGTGGAATCAA
66 CAAAGATACGGTAGAATCAA
* ** * *
34205985 CACTTAGCAACCACCTTTAGAGTCAATAATTGGGGGAATCAGCACTTAGCAACC
1 CACTTAGCAACCACCTTTACAGTCAATAATACGGGGAATTAGCACATAGCAACC
34206039 TCTCGGGGAA
Statistics
Matches: 123, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
84 14 0.11
85 109 0.89
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.22
Consensus pattern (85 bp):
CACTTAGCAACCACCTTTACAGTCAATAATACGGGGAATTAGCACATAGCAACCCCTTTCACAAC
CAAAGATACGGTAGAATCAA
Found at i:34206031 original size:42 final size:42
Alignment explanation
Indices: 34205812--34206038 Score: 160
Period size: 42 Copynumber: 5.4 Consensus size: 42
34205802 CTTAGTGGAT
* * * **
34205812 TCAGCACTTAGCAACAACC-TTA-AATTCAGTGATACAGGGAA
1 TCAGCACTTAGCAACCACCTTTACAA-TCAATAATAGGGGGAA
* * **
34205853 TTAGCACATAGCAACC-CCTTTCACAATCAA-AGATACGGTAGAA
1 TCAGCACTTAGCAACCACCTTT-ACAATCAATA-ATA-GGGGGAA
* * * *
34205896 TCAGCACTTAGCAACCACCTTTACATTCAGTGATACGGGGAA
1 TCAGCACTTAGCAACCACCTTTACAATCAATAATAGGGGGAA
* * * *
34205938 TTAGCACATAGCAACC-CCTTTCACAACCAA-ATATACGGTGGAA
1 TCAGCACTTAGCAACCACCTTT-ACAATCAATA-ATA-GGGGGAA
* * * *
34205981 TCAACACTTAGCAACCACCTTTAGAGTCAATAATTGGGGGAA
1 TCAGCACTTAGCAACCACCTTTACAATCAATAATAGGGGGAA
34206023 TCAGCACTTAGCAACC
1 TCAGCACTTAGCAACC
34206039 TCTCGGGGAA
Statistics
Matches: 140, Mismatches: 34, Indels: 23
0.71 0.17 0.12
Matches are distributed among these distances:
40 2 0.01
41 20 0.14
42 54 0.39
43 53 0.38
44 11 0.08
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.22
Consensus pattern (42 bp):
TCAGCACTTAGCAACCACCTTTACAATCAATAATAGGGGGAA
Found at i:34207161 original size:11 final size:11
Alignment explanation
Indices: 34207131--34207171 Score: 55
Period size: 11 Copynumber: 3.5 Consensus size: 11
34207121 GCCCAAATGT
34207131 CGAAATTTTTGAA
1 CGAAATTTTT--A
34207144 CGAAATTTTTA
1 CGAAATTTTTA
*
34207155 TGAAATTTTTA
1 CGAAATTTTTA
34207166 CGAAAT
1 CGAAAT
34207172 AATTTTGTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
11 16 0.62
13 10 0.38
ACGTcount: A:0.39, C:0.07, G:0.12, T:0.41
Consensus pattern (11 bp):
CGAAATTTTTA
Found at i:34210153 original size:103 final size:103
Alignment explanation
Indices: 34209968--34210166 Score: 242
Period size: 103 Copynumber: 1.9 Consensus size: 103
34209958 CTAGGCCAAA
* * * *
34209968 AAGTATCGATACCTTTTTGGCCAATTATTGATATTTTATGAATTATCGATACCCTTATCAAAAGC
1 AAGTATCGATACCTTTTCGGCCAAGTATTGATATTTTATGAAATATCGATACCCTTATCAAAAGA
*
34210033 AATACCAAAATGACATTCTATTTTTCACAAACCCTATT
66 AATACCAAAATGACATTCTATTTCTCACAAACCCTATT
* * * * *
34210071 AAGTATTGATACC-TTTCGGTCAAGTATTGATATTTTTTGAAATATCGATACCCCTTCTTAAAA-
1 AAGTATCGATACCTTTTCGGCCAAGTATTGATATTTTATGAAATATCGATA-CCCTTATCAAAAG
**
34210134 AAGATATTAAAAT-AGCATTCTATTTCTCACAAA
65 AA-ATACCAAAATGA-CATTCTATTTCTCACAAA
34210167 ATTTACAAAG
Statistics
Matches: 81, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
102 34 0.42
103 47 0.58
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.37
Consensus pattern (103 bp):
AAGTATCGATACCTTTTCGGCCAAGTATTGATATTTTATGAAATATCGATACCCTTATCAAAAGA
AATACCAAAATGACATTCTATTTCTCACAAACCCTATT
Found at i:34211174 original size:17 final size:17
Alignment explanation
Indices: 34211125--34211178 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
34211115 TGTCCTTAAG
34211125 CAAACT-AAAC-GAAAA
1 CAAACTAAAACTGAAAA
*
34211140 CAAAATAAAAACCTGAAAA
1 CAAACT-AAAA-CTGAAAA
*
34211159 TAAACTAAAACTGAAAA
1 CAAACTAAAACTGAAAA
34211176 CAA
1 CAA
34211179 GAAATAAACA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
15 5 0.16
17 12 0.39
18 5 0.16
19 9 0.29
ACGTcount: A:0.67, C:0.17, G:0.06, T:0.11
Consensus pattern (17 bp):
CAAACTAAAACTGAAAA
Found at i:34211649 original size:26 final size:26
Alignment explanation
Indices: 34211619--34211668 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
34211609 TTTTTTGACT
* *
34211619 ATTTTACCCCTGGTGAAATCTTGATG
1 ATTTTACCCCAGGTAAAATCTTGATG
* *
34211645 ATTTTTCCCCAGGTAAAATTTTGA
1 ATTTTACCCCAGGTAAAATCTTGA
34211669 GAAAATAAGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (26 bp):
ATTTTACCCCAGGTAAAATCTTGATG
Found at i:34226203 original size:27 final size:26
Alignment explanation
Indices: 34226162--34226369 Score: 263
Period size: 27 Copynumber: 7.8 Consensus size: 26
34226152 GTAATGGGCC
* *
34226162 TAAAATGACCAAAATACCCTCGAAGGA
1 TAAAATGACCGAAATACCC-CGAAGGG
*
34226189 TAAAATGACCGAAATACCCCCGAATGG
1 TAAAATGACCGAAATA-CCCCGAAGGG
*
34226216 TAAAATGACCGAAATACCCCGAGGGG
1 TAAAATGACCGAAATACCCCGAAGGG
*
34226242 TAAAATGGCCGAAATACCCCTGAAGGG
1 TAAAATGACCGAAATACCCC-GAAGGG
* *
34226269 TAAATTGACCGAAACACCCCTGAAGGG
1 TAAAATGACCGAAATACCCC-GAAGGG
* *
34226296 TAAAATGACCAAAATACCCCCGAAGGA
1 TAAAATGACCGAAATA-CCCCGAAGGG
*
34226323 TAAAATGATCGAAATACCTCCGAAGGG
1 TAAAATGACCGAAATACC-CCGAAGGG
*
34226350 TAAAATGACTGAAATACCCC
1 TAAAATGACCGAAATACCCC
34226370 TAGAAATTGA
Statistics
Matches: 158, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
26 31 0.20
27 120 0.76
28 7 0.04
ACGTcount: A:0.42, C:0.24, G:0.20, T:0.15
Consensus pattern (26 bp):
TAAAATGACCGAAATACCCCGAAGGG
Found at i:34235156 original size:40 final size:40
Alignment explanation
Indices: 34235112--34235336 Score: 298
Period size: 40 Copynumber: 5.7 Consensus size: 40
34235102 GCTCCTCGTT
* * *
34235112 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
*
34235152 CAAATGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
34235192 CAAATGCCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-AACTAGCA
* *
34235232 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTAGCA
* * *
34235271 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
34235312 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
34235337 CATTATTCAA
Statistics
Matches: 164, Mismatches: 13, Indels: 16
0.85 0.07 0.08
Matches are distributed among these distances:
38 4 0.02
39 30 0.18
40 117 0.71
41 13 0.08
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:34235290 original size:119 final size:120
Alignment explanation
Indices: 34235112--34235336 Score: 350
Period size: 119 Copynumber: 1.9 Consensus size: 120
34235102 GCTCCTCGTT
*
34235112 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
34235177 ATATAGTCAC-TAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCA
66 ATATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGATATAGTCAATAGCA
* * *
34235232 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCC
*
34235294 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
34235337 CATTATTCAA
Statistics
Matches: 97, Mismatches: 5, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
118 4 0.04
119 70 0.72
120 23 0.24
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
ATATAGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCA
Found at i:34243064 original size:50 final size:49
Alignment explanation
Indices: 34242947--34243287 Score: 331
Period size: 50 Copynumber: 6.9 Consensus size: 49
34242937 GAATATAACA
* * * ** * * * *
34242947 TGCCAAAGCTATGTCCCAGACATAGTCTTACATGGGATGTTTCTTGTAC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAG
* * * * ** *
34242996 TGCCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTA-G
* * * * ** *
34243046 TGCCTATGCCATGTCCCAGACACGGTATTACCGGGGACCTCTCATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATC-TAG
* * * * * * *
34243096 CGCCAATGCGATGTCCCAAACATGGTTTTACATGGGACCTGTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-AG
* *
34243146 TGCCAACACCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-AG
*
34243196 TGCCAACGTCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-AG
*
34243246 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
34243288 TTACCCAAAT
Statistics
Matches: 242, Mismatches: 47, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
49 38 0.16
50 203 0.84
51 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (49 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAG
Found at i:34243233 original size:150 final size:150
Alignment explanation
Indices: 34243004--34243282 Score: 371
Period size: 150 Copynumber: 1.9 Consensus size: 150
34242994 ACTGCCAATG
* ** * *
34243004 CCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAGGTGCCTATGCCATGTCCCAGACAC
1 CCATATCCCAGACATGGTCTTACATGAGACCTCTCATATAGGTGCCAACGCCATGTCCCAGACAC
* ** * * *
34243069 GGTATTACCGGGGACCTCTCATCTTGGCGCCAATGCGATGTCCCAAACATGGTTTTACATGGGAC
66 GGTATTACAGGGGACCTCTCATCTCAGCGCCAACGCCATGTCCCAAACATGGTCTTACATGGGAC
34243134 CTGTCATCTCGGTGCCAACA
131 CTGTCATCTCGGTGCCAACA
* * *
34243154 CCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCA-GTGCCAACGTCATGTCCCAGACA
1 CCATATCCCAGACATGGTCTTACATGAGACCTCTCATAT-AGGTGCCAACGCCATGTCCCAGACA
* * * * *
34243218 TGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA
65 CGGTATTACAGGGGACCTCTCATCTCAGCGCCAACGCCATGTCCCAAACATGGTCTTACATGGGA
34243283 TCTCTTTACC
Statistics
Matches: 109, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
150 108 0.99
151 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (150 bp):
CCATATCCCAGACATGGTCTTACATGAGACCTCTCATATAGGTGCCAACGCCATGTCCCAGACAC
GGTATTACAGGGGACCTCTCATCTCAGCGCCAACGCCATGTCCCAAACATGGTCTTACATGGGAC
CTGTCATCTCGGTGCCAACA
Found at i:34249168 original size:20 final size:20
Alignment explanation
Indices: 34249145--34249197 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
34249135 ACCCTTTCAA
*
34249145 ATTTTCTTA-TTTTCATTTGC
1 ATTTTCTTACTTTCCA-TTGC
34249165 A-TTTCATTACTTTCCATTGC
1 ATTTTC-TTACTTTCCATTGC
*
34249185 ATTTTCTTTCTTT
1 ATTTTCTTACTTT
34249198 AGCTTAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
19 4 0.14
20 15 0.54
21 9 0.32
ACGTcount: A:0.15, C:0.19, G:0.04, T:0.62
Consensus pattern (20 bp):
ATTTTCTTACTTTCCATTGC
Found at i:34249866 original size:25 final size:26
Alignment explanation
Indices: 34249838--34249958 Score: 93
Period size: 25 Copynumber: 4.7 Consensus size: 26
34249828 TGTACATATA
*
34249838 TGCTCACACGAGCTATGAATATGCG-
1 TGCTCACACGAGCTATGAAAATGCGC
* * * *
34249863 TGCTTACATGAGCTGTGAAAATGGGTC
1 TGCTCACACGAGCTATGAAAATGCG-C
* * *
34249890 TACTCACACGAGATATGAATATGCG-
1 TGCTCACACGAGCTATGAAAATGCGC
** * *
34249915 TGCTCACATAAGCTGTGAAAATGGGTC
1 TGCTCACACGAGCTATGAAAATGCG-C
*
34249942 TGCTCAGACGAGCTATG
1 TGCTCACACGAGCTATG
34249959 GGTCAGAATG
Statistics
Matches: 69, Mismatches: 23, Indels: 6
0.70 0.23 0.06
Matches are distributed among these distances:
25 38 0.55
27 31 0.45
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
TGCTCACACGAGCTATGAAAATGCGC
Found at i:34249918 original size:52 final size:52
Alignment explanation
Indices: 34249840--34249958 Score: 193
Period size: 52 Copynumber: 2.3 Consensus size: 52
34249830 TACATATATG
* *
34249840 CTCACACGAGCTATGAATATGCGTGCTTACATGAGCTGTGAAAATGGGTCTA
1 CTCACACGAGCTATGAATATGCGTGCTCACATAAGCTGTGAAAATGGGTCTA
* *
34249892 CTCACACGAGATATGAATATGCGTGCTCACATAAGCTGTGAAAATGGGTCTG
1 CTCACACGAGCTATGAATATGCGTGCTCACATAAGCTGTGAAAATGGGTCTA
*
34249944 CTCAGACGAGCTATG
1 CTCACACGAGCTATG
34249959 GGTCAGAATG
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 61 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (52 bp):
CTCACACGAGCTATGAATATGCGTGCTCACATAAGCTGTGAAAATGGGTCTA
Found at i:34254239 original size:31 final size:31
Alignment explanation
Indices: 34254204--34254279 Score: 152
Period size: 31 Copynumber: 2.5 Consensus size: 31
34254194 AAATTTTGTT
34254204 ATTTTAGTCACTCTTATTAGATAAGTTGTCA
1 ATTTTAGTCACTCTTATTAGATAAGTTGTCA
34254235 ATTTTAGTCACTCTTATTAGATAAGTTGTCA
1 ATTTTAGTCACTCTTATTAGATAAGTTGTCA
34254266 ATTTTAGTCACTCT
1 ATTTTAGTCACTCT
34254280 AAGTCACTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.28, C:0.14, G:0.12, T:0.46
Consensus pattern (31 bp):
ATTTTAGTCACTCTTATTAGATAAGTTGTCA
Found at i:34263773 original size:15 final size:15
Alignment explanation
Indices: 34263753--34263783 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
34263743 TATATTTATG
*
34263753 TATGAAATTATAATA
1 TATGAAATTAAAATA
34263768 TATGAAATTAAAATA
1 TATGAAATTAAAATA
34263783 T
1 T
34263784 CAAAAAATTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (15 bp):
TATGAAATTAAAATA
Found at i:34266548 original size:40 final size:41
Alignment explanation
Indices: 34266472--34266548 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
34266462 GGGCATGCGG
* *
34266472 GGATTTAGCGACGTTTTTTATTAAGCGCCGCTAAAGATCAA
1 GGATTTAGCGACGTTTTTGATAAAGCGCCGCTAAAGATCAA
* *
34266513 GGATTTAGCGGCGTTTTTGATAAATCGCCGC-AAAGA
1 GGATTTAGCGACGTTTTTGATAAAGCGCCGCTAAAGA
34266549 AACCTAAGAC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
40 5 0.16
41 27 0.84
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.30
Consensus pattern (41 bp):
GGATTTAGCGACGTTTTTGATAAAGCGCCGCTAAAGATCAA
Found at i:34268280 original size:147 final size:147
Alignment explanation
Indices: 34268108--34268439 Score: 353
Period size: 147 Copynumber: 2.3 Consensus size: 147
34268098 ATTACTGTCA
* * ** * * * *
34268108 CTTTACATAAAACGCCGCAAAATTGTAT-TTATGTTTATCGAAATGTTGTCATTTTGTCAATGGT
1 CTTTACTTAAAACGCCGCAAAATTGT-TCTAACATTTATAGAAACGTTGCCATTTTGTAAATGGT
* * * * * *
34268172 ATTAGTGGCGCTTTTTTGGAAACGCCACAAGCTTGAGTTAAATGTTGGGGAAACGACTTCG-TTT
65 ATTAGTGGCGATTTTTTGAAAACACCACAAGCTTGAGGTAAATGTTGAGGAAACGACTGCGTTTT
*
34268236 GATCTTATATTTAGTGGCG
130 GAT-TTATAGTTAGTGGCG
* * * *
34268255 CTTTACTTAAAACGCCGCAACATTGTTCTAACATTTATAGAAACGTTGCCGTTTTTTAAATGTTA
1 CTTTACTTAAAACGCCGCAAAATTGTTCTAACATTTATAGAAACGTTGCCATTTTGTAAATGGTA
* ** * * * *
34268320 TTAGTGGCGATTTTTTTAAAACACCACGGGTTTGAGGTAAGTGTTGATGAAGCGACTGCGTTTTG
66 TTAGTGGCGATTTTTTGAAAACACCACAAGCTTGAGGTAAATGTTGAGGAAACGACTGCGTTTTG
34268385 ATTTATAGTTAGTGGCG
131 ATTTATAGTTAGTGGCG
* * * * *
34268402 CTTTAATTAAAACGCCGTAAAAATATTTTAACATTTAT
1 CTTTACTTAAAACGCCGCAAAATTGTTCTAACATTTAT
34268440 CGATACAAGG
Statistics
Matches: 151, Mismatches: 32, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
146 1 0.01
147 144 0.95
148 6 0.04
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (147 bp):
CTTTACTTAAAACGCCGCAAAATTGTTCTAACATTTATAGAAACGTTGCCATTTTGTAAATGGTA
TTAGTGGCGATTTTTTGAAAACACCACAAGCTTGAGGTAAATGTTGAGGAAACGACTGCGTTTTG
ATTTATAGTTAGTGGCG
Found at i:34268453 original size:147 final size:145
Alignment explanation
Indices: 34268166--34268568 Score: 369
Period size: 147 Copynumber: 2.8 Consensus size: 145
34268156 TCATTTTGTC
* ** * * * ** *
34268166 AATGGTATTAGTGGCGCTTTTTTGGAAACGCCACAAGCTTGAGTTAAATGTTGGGGAAACGACTT
1 AATGTTATTAGTGGCG-TTTTTTAAAAACGCCACAGGTTTGAGCTAAATGTTGATGAAACGACTG
* * * * *
34268231 CG-TTTGATCTTATATTTAGTGGCGCTTTACTTAAAACGCCGCAACATTGTTCTAACATTTATAG
65 CGTTTTGAT-TTATAGTTAGTGGCGCTTTAATTAAAACGCCGCAAAAATATTCTAACATTTATAG
*** *
34268295 AAACGTTGCCGTTTTTTA
129 AAACAAGGCCG-TTTTGA
* * * * * *
34268313 AATGTTATTAGTGGCGATTTTTTTAAAACACCACGGGTTTGAGGTAAGTGTTGATGAAGCGACTG
1 AATGTTATTAGTGGCG-TTTTTTAAAAACGCCACAGGTTTGAGCTAAATGTTGATGAAACGACTG
* * *
34268378 CGTTTTGATTTATAGTTAGTGGCGCTTTAATTAAAACGCCGTAAAAATATTTTAACATTTATCGA
65 CGTTTTGATTTATAGTTAGTGGCGCTTTAATTAAAACGCCGCAAAAATATTCTAACATTTATAGA
*
34268443 TACAAGGCCGTTTTGA
130 AACAAGGCCGTTTTGA
** * * * * **
34268459 TGTATTATTAGTGGCGTTTATTCAAAAACGCCACAGGTGTGCGCTATTTGTTGATGAAACGACTG
1 AATGTTATTAGTGGCGTTT-TTTAAAAACGCCACAGGTTTGAGCTAAATGTTGATGAAACGACTG
* * * * *
34268524 CGTTTCGACTTATAGTTAGTGGTG-TTTATTTATAAATGCCGCAAA
65 CGTTTTGATTTATAGTTAGTGGCGCTTTAATTA-AAACGCCGCAAA
34268569 TGGTTAATTT
Statistics
Matches: 207, Mismatches: 46, Indels: 7
0.80 0.18 0.03
Matches are distributed among these distances:
145 10 0.05
146 84 0.41
147 107 0.52
148 6 0.03
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (145 bp):
AATGTTATTAGTGGCGTTTTTTAAAAACGCCACAGGTTTGAGCTAAATGTTGATGAAACGACTGC
GTTTTGATTTATAGTTAGTGGCGCTTTAATTAAAACGCCGCAAAAATATTCTAACATTTATAGAA
ACAAGGCCGTTTTGA
Found at i:34268538 original size:146 final size:146
Alignment explanation
Indices: 34268221--34268568 Score: 351
Period size: 146 Copynumber: 2.4 Consensus size: 146
34268211 AAATGTTGGG
* * * * * *
34268221 GAAACGACTTCGTTTGATCTTATATTTAGTGGCGCTTTACTTAAAACGCCGCAACATTGTTCTAA
1 GAAACGACTGCGTTTGA-CTTATAGTTAGTGGCGCTTTAATTAAAACGCCGCAAAAATATTCTAA
*** * * ** *
34268286 CATTTATAGAAACGTTGCCGTTTTTTAAATGTTATTAGTGGCGATTTTTTTAAAACACCACGGGT
65 CATTTATAGAAACAAGGCCGTTTTTGAAATATTATTAGTGGCGATTTTTCAAAAACACCACAGGT
* *
34268351 TTGAGGTAAGTGTTGAT
130 GTGAGCTAAGTGTTGAT
* * * *
34268368 GAAGCGACTGCGTTTTGATTTATAGTTAGTGGCGCTTTAATTAAAACGCCGTAAAAATATTTTAA
1 GAAACGACTGCG-TTTGACTTATAGTTAGTGGCGCTTTAATTAAAACGCCGCAAAAATATTCTAA
* * ** *
34268433 CATTTATCGATACAAGGCCG-TTTTGATGTATTATTAGTGGCG-TTTATTCAAAAACGCCACAGG
65 CATTTATAGAAACAAGGCCGTTTTTGAAATATTATTAGTGGCGATTT-TTCAAAAACACCACAGG
* **
34268496 TGTGCGCTATTTGTTGAT
129 TGTGAGCTAAGTGTTGAT
* * *
34268514 GAAACGACTGCGTTTCGACTTATAGTTAGTGGTG-TTTATTTATAAATGCCGCAAA
1 GAAACGACTGCGTTT-GACTTATAGTTAGTGGCGCTTTAATTA-AAACGCCGCAAA
34268569 TGGTTAATTT
Statistics
Matches: 163, Mismatches: 34, Indels: 9
0.79 0.17 0.04
Matches are distributed among these distances:
145 13 0.08
146 81 0.50
147 64 0.39
148 5 0.03
ACGTcount: A:0.28, C:0.15, G:0.21, T:0.37
Consensus pattern (146 bp):
GAAACGACTGCGTTTGACTTATAGTTAGTGGCGCTTTAATTAAAACGCCGCAAAAATATTCTAAC
ATTTATAGAAACAAGGCCGTTTTTGAAATATTATTAGTGGCGATTTTTCAAAAACACCACAGGTG
TGAGCTAAGTGTTGAT
Found at i:34271011 original size:13 final size:13
Alignment explanation
Indices: 34270983--34271047 Score: 78
Period size: 13 Copynumber: 5.0 Consensus size: 13
34270973 ACTTATTACT
34270983 AATATATATA-TTA
1 AATATAT-TACTTA
*
34270996 AATTTATTACTTA
1 AATATATTACTTA
*
34271009 AATATGTTACTTA
1 AATATATTACTTA
*
34271022 AATATGTTACTTA
1 AATATATTACTTA
*
34271035 AATACATTACTTA
1 AATATATTACTTA
34271048 CTAAAATTTA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
12 2 0.04
13 44 0.96
ACGTcount: A:0.43, C:0.08, G:0.03, T:0.46
Consensus pattern (13 bp):
AATATATTACTTA
Found at i:34271091 original size:63 final size:63
Alignment explanation
Indices: 34271019--34271205 Score: 365
Period size: 63 Copynumber: 3.0 Consensus size: 63
34271009 AATATGTTAC
*
34271019 TTAAATATGTTACTTAAATACATTACTTACTAAAATTTAAGTAAGTTTACTTATATGTAAAAT
1 TTAAGTATGTTACTTAAATACATTACTTACTAAAATTTAAGTAAGTTTACTTATATGTAAAAT
34271082 TTAAGTATGTTACTTAAATACATTACTTACTAAAATTTAAGTAAGTTTACTTATATGTAAAAT
1 TTAAGTATGTTACTTAAATACATTACTTACTAAAATTTAAGTAAGTTTACTTATATGTAAAAT
34271145 TTAAGTATGTTACTTAAATACATTACTTACTAAAATTTAAGTAAGTTTACTTATATGTAAA
1 TTAAGTATGTTACTTAAATACATTACTTACTAAAATTTAAGTAAGTTTACTTATATGTAAA
34271206 CTTACATAAT
Statistics
Matches: 123, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 123 1.00
ACGTcount: A:0.42, C:0.08, G:0.07, T:0.43
Consensus pattern (63 bp):
TTAAGTATGTTACTTAAATACATTACTTACTAAAATTTAAGTAAGTTTACTTATATGTAAAAT
Found at i:34271118 original size:36 final size:36
Alignment explanation
Indices: 34271076--34271197 Score: 129
Period size: 36 Copynumber: 3.6 Consensus size: 36
34271066 TACTTATATG
34271076 TAAAATTTAAGTATGTTACTTAAATACATTACTTAC
1 TAAAATTTAAGTATGTTACTTAAATACATTACTTAC
* *
34271112 TAAAATTTAAGTA----AGTT---TAC-TTA--TATG
1 TAAAATTTAAGTATGTTACTTAAATACATTACTTA-C
34271139 TAAAATTTAAGTATGTTACTTAAATACATTACTTAC
1 TAAAATTTAAGTATGTTACTTAAATACATTACTTAC
*
34271175 TAAAATTTAAGTAAGTTTACTTA
1 TAAAATTTAAGTATG-TTACTTA
34271198 TATGTAAACT
Statistics
Matches: 69, Mismatches: 5, Indels: 23
0.71 0.05 0.24
Matches are distributed among these distances:
26 2 0.03
27 13 0.19
28 3 0.04
29 3 0.04
31 3 0.04
32 3 0.04
34 3 0.04
35 3 0.04
36 27 0.39
37 9 0.13
ACGTcount: A:0.42, C:0.08, G:0.07, T:0.43
Consensus pattern (36 bp):
TAAAATTTAAGTATGTTACTTAAATACATTACTTAC
Found at i:34271234 original size:23 final size:23
Alignment explanation
Indices: 34271204--34271247 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
34271194 CTTATATGTA
*
34271204 AACTTACATAATACATTACTTTT
1 AACTTACATAATACATAACTTTT
34271227 AACTTACATAATACATAACTT
1 AACTTACATAATACATAACTT
34271248 ATAAATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.43, C:0.18, G:0.00, T:0.39
Consensus pattern (23 bp):
AACTTACATAATACATAACTTTT
Found at i:34271297 original size:9 final size:9
Alignment explanation
Indices: 34271266--34271761 Score: 420
Period size: 9 Copynumber: 55.0 Consensus size: 9
34271256 TTTTTATATA
34271266 AACTTACAT
1 AACTTACAT
34271275 AA--TACATTT
1 AACTTACA--T
34271284 AACTTACAT
1 AACTTACAT
*
34271293 AACTTACAC
1 AACTTACAT
*
34271302 AACTTACAC
1 AACTTACAT
34271311 AACTTACAT
1 AACTTACAT
34271320 AACCTT-CAT
1 AA-CTTACAT
34271329 AA--TACATTT
1 AACTTACA--T
34271338 AACTTACAT
1 AACTTACAT
34271347 AACTTACAT
1 AACTTACAT
34271356 AACTTACAT
1 AACTTACAT
* *
34271365 AA--TGCAA
1 AACTTACAT
34271372 AACTTACAT
1 AACTTACAT
*
34271381 AAC-AAC-T
1 AACTTACAT
*
34271388 TACTTACAT
1 AACTTACAT
*
34271397 AACATACAT
1 AACTTACAT
* *
34271406 TACTTAAAT
1 AACTTACAT
* *
34271415 TATTTACAT
1 AACTTACAT
34271424 AA--TACAT
1 AACTTACAT
34271431 AACTTAGTACAT
1 AAC-T--TACAT
*
34271443 AATTTACAT
1 AACTTACAT
34271452 AA--TACAT
1 AACTTACAT
34271459 AACTTAGTACAT
1 AAC-T--TACAT
34271471 AACTTACAT
1 AACTTACAT
* *
34271480 AATTTTTTC-T
1 AA--CTTACAT
34271490 AAATTGCTTACAT
1 -AA---CTTACAT
* *
34271503 AAATTATAT
1 AACTTACAT
34271512 AACTTACAT
1 AACTTACAT
34271521 AACTTACACT
1 AACTTACA-T
*
34271531 AA-TTAAAT
1 AACTTACAT
34271539 AACTTACAT
1 AACTTACAT
34271548 AACTTACACT
1 AACTTACA-T
*
34271558 AA-TTAAAT
1 AACTTACAT
34271566 AACTTACAT
1 AACTTACAT
34271575 AACTTACAT
1 AACTTACAT
*
34271584 AACTTATATT
1 AACTTACA-T
*
34271594 AA-TTAAAT
1 AACTTACAT
34271602 AACTTACAT
1 AACTTACAT
34271611 AACTTACAT
1 AACTTACAT
*
34271620 AACTTAAAT
1 AACTTACAT
34271629 AACTTACAT
1 AACTTACAT
34271638 AACTTACAT
1 AACTTACAT
*
34271647 ATCTTACAT
1 AACTTACAT
34271656 AACTTACAT
1 AACTTACAT
* *
34271665 AAATTAAAT
1 AACTTACAT
34271674 AACTTACAT
1 AACTTACAT
34271683 AACTTACAT
1 AACTTACAT
34271692 AACTTACAT
1 AACTTACAT
*
34271701 AAATTACAT
1 AACTTACAT
34271710 AACTTACAT
1 AACTTACAT
*
34271719 AATTTACAT
1 AACTTACAT
34271728 AACTTACAT
1 AACTTACAT
34271737 AA--TACAT
1 AACTTACAT
*
34271744 AACCTT-CCT
1 AA-CTTACAT
34271753 AACTTACAT
1 AACTTACAT
34271762 TATTGTTTAA
Statistics
Matches: 400, Mismatches: 48, Indels: 78
0.76 0.09 0.15
Matches are distributed among these distances:
6 1 0.00
7 35 0.09
8 16 0.04
9 297 0.74
10 14 0.04
11 15 0.04
12 21 0.05
13 1 0.00
ACGTcount: A:0.45, C:0.19, G:0.01, T:0.35
Consensus pattern (9 bp):
AACTTACAT
Found at i:34271454 original size:28 final size:28
Alignment explanation
Indices: 34271416--34271482 Score: 125
Period size: 28 Copynumber: 2.4 Consensus size: 28
34271406 TACTTAAATT
34271416 ATTTACATAATACATAACTTAGTACATA
1 ATTTACATAATACATAACTTAGTACATA
34271444 ATTTACATAATACATAACTTAGTACATA
1 ATTTACATAATACATAACTTAGTACATA
*
34271472 ACTTACATAAT
1 ATTTACATAAT
34271483 TTTTTCTAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.36
Consensus pattern (28 bp):
ATTTACATAATACATAACTTAGTACATA
Found at i:34277861 original size:85 final size:84
Alignment explanation
Indices: 34277772--34278020 Score: 252
Period size: 85 Copynumber: 2.9 Consensus size: 84
34277762 TTTGTGAAAT
* * **
34277772 AAGCGCCGCTAAAGAACACTA-CTATTAGCGGCGTTTTTGAAC-AAGCGCCACTATAGAACATTA
1 AAGCGCCGCTAAAGAACACGATCT-TTAGCGGCGTTTTT-AACAAAGCGCCACTAAAGAACACGA
34277835 -CTTTTAGCGGCGTTTTCCTCCA
64 TC-TTTAGCGGC-TTTTCCTCCA
** *
34277857 AAGCGCCGCTAAAGAACACGATCTTTAGCGGCGTTTTTTTCAAAGCGCCGCTAAAGAACACGATC
1 AAGCGCCGCTAAAGAACACGATCTTTAGCGGCGTTTTTAACAAAGCGCCACTAAAGAACACGATC
** *
34277922 TTTAGCGGCTTTTTTTCCT
66 TTTAGCGGCTTTTCCTCCA
* * * ** ** * *
34277941 AAGCGCCGCTAAAGAACATGATCTTTAGTGGCTTTTATTTCCTTAGCGCCGCTAAAGAACATGAT
1 AAGCGCCGCTAAAGAACACGATCTTTAGCGGCGTTT-TTAACAAAGCGCCACTAAAGAACACGAT
34278006 CTTTAGCGGCGTTTT
65 CTTTAGCGGC-TTTT
34278021 TTTCTGTAAG
Statistics
Matches: 142, Mismatches: 17, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
84 41 0.29
85 94 0.66
86 7 0.05
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (84 bp):
AAGCGCCGCTAAAGAACACGATCTTTAGCGGCGTTTTTAACAAAGCGCCACTAAAGAACACGATC
TTTAGCGGCTTTTCCTCCA
Found at i:34277945 original size:127 final size:127
Alignment explanation
Indices: 34277772--34278024 Score: 325
Period size: 127 Copynumber: 2.0 Consensus size: 127
34277762 TTTGTGAAAT
* * *
34277772 AAGCGCCGCTAAAGAACACTACTATTAGCGGCGTTTTTGAACAAGCGCCACTATAGAACATTA-C
1 AAGCGCCGCTAAAGAACACGACTATTAGCGGCGTTTTTGAACAAGCGCCACTAAAGAACATGATC
34277836 TTTTAGCGGCGTTTT-CCTCCAAAGCGCCGCTAAAGAACACGATCTTTAGCGGCGTTTTTTTCA
66 -TTTAGCGGC-TTTTACCTCCAAAGCGCCGCTAAAGAACACGATCTTTAGCGGCGTTTTTTTCA
*** *
34277899 AAGCGCCGCTAAAGAACACGATCT-TTAGCGGC-TTTTTTTCCTAAGCGCCGCTAAAGAACATGA
1 AAGCGCCGCTAAAGAACACGA-CTATTAGCGGCGTTTTTGAAC-AAGCGCCACTAAAGAACATGA
* ** ** *
34277962 TCTTTAGTGGCTTTTATTTCCTTAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTC
64 TCTTTAGCGGCTTTTACCTCCAAAGCGCCGCTAAAGAACACGATCTTTAGCGGCGTTTTTTTC
34278025 TGTAAGCGCC
Statistics
Matches: 109, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
126 10 0.09
127 96 0.88
128 3 0.03
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (127 bp):
AAGCGCCGCTAAAGAACACGACTATTAGCGGCGTTTTTGAACAAGCGCCACTAAAGAACATGATC
TTTAGCGGCTTTTACCTCCAAAGCGCCGCTAAAGAACACGATCTTTAGCGGCGTTTTTTTCA
Found at i:34277996 original size:43 final size:42
Alignment explanation
Indices: 34277771--34278041 Score: 282
Period size: 42 Copynumber: 6.4 Consensus size: 42
34277761 GTTTGTGAAA
* **
34277771 TAAGCGCCGCTAAAGAACACTA-CTATTAGCGGCGTTTTTGAAC
1 TAAGCGCCGCTAAAGAACACGATCT-TTAGCGGCGTTTTT-TTC
* * ** * *
34277814 -AAGCGCCACTATAGAACATTA-CTTTTAGCGGCGTTTTCCTCC
1 TAAGCGCCGCTAAAGAACACGATC-TTTAGCGGCGTTTT-TTTC
*
34277856 AAAGCGCCGCTAAAGAACACGATCTTTAGCGGCGTTTTTTTC
1 TAAGCGCCGCTAAAGAACACGATCTTTAGCGGCGTTTTTTTC
*
34277898 AAAGCGCCGCTAAAGAACACGATCTTTAGCGGC-TTTTTTTCC
1 TAAGCGCCGCTAAAGAACACGATCTTTAGCGGCGTTTTTTT-C
* *
34277940 TAAGCGCCGCTAAAGAACATGATCTTTAGTGGC-TTTTATTTCC
1 TAAGCGCCGCTAAAGAACACGATCTTTAGCGGCGTTTT-TTT-C
* *
34277983 TTAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTC
1 TAAGCGCCGCTAAAGAACACGATCTTTAGCGGCGTTTTTTTC
*
34278025 TGTAAGCGCCGCAAAAG
1 --TAAGCGCCGCTAAAG
34278042 TTAGCGACGT
Statistics
Matches: 200, Mismatches: 19, Indels: 17
0.85 0.08 0.07
Matches are distributed among these distances:
41 7 0.04
42 104 0.52
43 71 0.35
44 18 0.09
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (42 bp):
TAAGCGCCGCTAAAGAACACGATCTTTAGCGGCGTTTTTTTC
Found at i:34280675 original size:103 final size:103
Alignment explanation
Indices: 34280428--34280795 Score: 614
Period size: 102 Copynumber: 3.6 Consensus size: 103
34280418 TAACCGTTAT
* *
34280428 CGGTGGATTCCGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
* * * *
34280493 GAATCAGCACTTAGCAACCCCC-TTCATATTTCAGATG
66 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
* * ** *
34280530 CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAACACTTAGCAACCCCTCGGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
*
34280595 GAATCAACACTTAGCAACCCCCTTTCACATTTAAAATA
66 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
34280633 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
34280698 GAATCAGCACTT-GCAACCCCCTTTCACATTTAAAATA
66 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
34280735 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTT
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTT
34280796 TATATGCAAT
Statistics
Matches: 247, Mismatches: 18, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
102 165 0.67
103 82 0.33
ACGTcount: A:0.32, C:0.30, G:0.20, T:0.18
Consensus pattern (103 bp):
CGGTGGAATCAGCACTTAGCAACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGG
GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATA
Found at i:34280679 original size:33 final size:33
Alignment explanation
Indices: 34280637--34280791 Score: 108
Period size: 33 Copynumber: 4.6 Consensus size: 33
34280627 AAAATACGGT
34280637 GGAATCAGCACTTAGCAACCACCAATGAATCGG
1 GGAATCAGCACTTAGCAACCACCAATGAATCGG
** *
34280670 GGAATCAGCACACAGCAACC-CC--T---TGGG
1 GGAATCAGCACTTAGCAACCACCAATGAATCGG
* *
34280697 GGAATCAGCACTT-GCAACCCCCTTTCACATTTAAAATACGG
1 GGAATCAGCACTTAGCAA-CCAC---CA-A--T-GAAT-CGG
34280738 TGGAATCAGCACTTAGCAACCACCAATGAATCGG
1 -GGAATCAGCACTTAGCAACCACCAATGAATCGG
**
34280772 GGAATCAGCACACAGCAACC
1 GGAATCAGCACTTAGCAACC
34280792 CCTTTATATG
Statistics
Matches: 95, Mismatches: 10, Indels: 34
0.68 0.07 0.24
Matches are distributed among these distances:
26 4 0.04
27 16 0.17
28 1 0.01
30 1 0.01
31 1 0.01
32 2 0.02
33 36 0.38
34 3 0.03
35 3 0.03
36 2 0.02
38 1 0.01
39 2 0.02
40 1 0.01
41 2 0.02
42 16 0.17
43 4 0.04
ACGTcount: A:0.34, C:0.30, G:0.20, T:0.16
Consensus pattern (33 bp):
GGAATCAGCACTTAGCAACCACCAATGAATCGG
Found at i:34300506 original size:79 final size:78
Alignment explanation
Indices: 34300322--34300537 Score: 240
Period size: 79 Copynumber: 2.8 Consensus size: 78
34300312 AATTCAACTA
34300322 AACAATTCTGTTTCAGGATTTTATTCCTG-CAATTTAACAGGATTTGTTCGATTTTTGTTTCAAA
1 AACAATTCTGTTTCAGGATTTTATTCCTGTC-ATTTAACAGGATTTGTTCGATTTTTGTTTCAAA
*
34300386 CAAAAAATCTATTG
65 CAAAAAATCGATTG
* * * * *
34300400 AACAATTCTATTTTAGGATTTTATTCCTGTCATTTAATAGGATTTTTTTGAATTTCTTGTTTCAA
1 AACAATTCTGTTTCAGGATTTTATTCCTGTCATTTAACAGGATTTGTTCG-ATTT-TTGTTTCAA
* *
34300465 A-TAGAAATCGATTG
64 ACAAAAAATCGATTG
* * * ** * *
34300479 AACAATTATGTTTCAAGATTCTT-TTCCTGTCATTCAACAAAATTTATTCGATTTCTGTT
1 AACAATTCTGTTTCAGGATT-TTATTCCTGTCATTTAACAGGATTTGTTCGATTTTTGTT
34300538 GTTAACAGTA
Statistics
Matches: 115, Mismatches: 19, Indels: 9
0.80 0.13 0.06
Matches are distributed among these distances:
77 4 0.03
78 47 0.41
79 52 0.45
80 12 0.10
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.45
Consensus pattern (78 bp):
AACAATTCTGTTTCAGGATTTTATTCCTGTCATTTAACAGGATTTGTTCGATTTTTGTTTCAAAC
AAAAAATCGATTG
Found at i:34304615 original size:40 final size:40
Alignment explanation
Indices: 34304548--34304741 Score: 210
Period size: 40 Copynumber: 4.8 Consensus size: 40
34304538 TCAATGGAAT
* * ** *
34304548 CGAAGTGCAAATAGGGGCACAAATGTGCATTCAAGGACAC
1 CGAAGTACAAACAGGGGCACGTATGTGCATTCAAGGGCAC
* * * *
34304588 CAAAGTAAAAACAGGGGTA-GATATGTGCATTCAGGGGCAC
1 CGAAGTACAAACAGGGGCACG-TATGTGCATTCAAGGGCAC
* * *
34304628 CGAAGTGCAAACAGGGGCACGTATGTGCATTCAGGGGTAC
1 CGAAGTACAAACAGGGGCACGTATGTGCATTCAAGGGCAC
* * * * *
34304668 TGAAGTGCAAACAGGGTCATGTATGTGCATTCAAGGGTAC
1 CGAAGTACAAACAGGGGCACGTATGTGCATTCAAGGGCAC
*
34304708 CGAAGTATAAACAGGGGCACGTATGTGCATTCAA
1 CGAAGTACAAACAGGGGCACGTATGTGCATTCAA
34304742 TAGTAGTTTC
Statistics
Matches: 129, Mismatches: 23, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
40 128 0.99
41 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.30, T:0.19
Consensus pattern (40 bp):
CGAAGTACAAACAGGGGCACGTATGTGCATTCAAGGGCAC
Found at i:34304635 original size:20 final size:20
Alignment explanation
Indices: 34304612--34304676 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
34304602 GGGTAGATAT
34304612 GTGCATTCAGGGGCACCGAA
1 GTGCATTCAGGGGCACCGAA
** *
34304632 GTGCAAACAGGGGCA-CGTAT
1 GTGCATTCAGGGGCACCG-AA
* *
34304652 GTGCATTCAGGGGTACTGAA
1 GTGCATTCAGGGGCACCGAA
34304672 GTGCA
1 GTGCA
34304677 AACAGGGTCA
Statistics
Matches: 35, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
19 2 0.06
20 32 0.91
21 1 0.03
ACGTcount: A:0.26, C:0.20, G:0.35, T:0.18
Consensus pattern (20 bp):
GTGCATTCAGGGGCACCGAA
Found at i:34304682 original size:20 final size:19
Alignment explanation
Indices: 34304619--34304683 Score: 67
Period size: 20 Copynumber: 3.3 Consensus size: 19
34304609 TATGTGCATT
34304619 CAGGGGCACCGAAGTGCAAA
1 CAGGGGCA-CGAAGTGCAAA
* **
34304639 CAGGGGCACGTATGTGCATT
1 CAGGGGCACG-AAGTGCAAA
*
34304659 CAGGGGTACTGAAGTGCAAA
1 CAGGGGCAC-GAAGTGCAAA
34304679 CAGGG
1 CAGGG
34304684 TCATGTATGT
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
19 2 0.06
20 33 0.92
21 1 0.03
ACGTcount: A:0.29, C:0.20, G:0.37, T:0.14
Consensus pattern (19 bp):
CAGGGGCACGAAGTGCAAA
Found at i:34304695 original size:20 final size:20
Alignment explanation
Indices: 34304632--34304696 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
34304622 GGGCACCGAA
* *
34304632 GTGCAAACAGGGGCACGTAT
1 GTGCAAACAGGGTCATGTAT
** *
34304652 GTGCATTCAGGGGT-ACTG-AA
1 GTGCAAACA-GGGTCA-TGTAT
34304672 GTGCAAACAGGGTCATGTAT
1 GTGCAAACAGGGTCATGTAT
34304692 GTGCA
1 GTGCA
34304697 TTCAAGGGTA
Statistics
Matches: 33, Mismatches: 8, Indels: 8
0.67 0.16 0.16
Matches are distributed among these distances:
19 6 0.18
20 23 0.70
21 4 0.12
ACGTcount: A:0.28, C:0.17, G:0.34, T:0.22
Consensus pattern (20 bp):
GTGCAAACAGGGTCATGTAT
Found at i:34305127 original size:17 final size:18
Alignment explanation
Indices: 34305089--34305127 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
34305079 AATATAATTT
*
34305089 ATTTCATTTATTAGCTTAA
1 ATTTCATATATTAGC-TAA
34305108 ATTTCATATATTAG-TAA
1 ATTTCATATATTAGCTAA
34305125 ATT
1 ATT
34305128 CTAAAATTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
19 13 0.68
ACGTcount: A:0.36, C:0.08, G:0.05, T:0.51
Consensus pattern (18 bp):
ATTTCATATATTAGCTAA
Found at i:34308388 original size:477 final size:477
Alignment explanation
Indices: 34307489--34308450 Score: 1753
Period size: 477 Copynumber: 2.0 Consensus size: 477
34307479 GATATTTTTT
*
34307489 TTACATTGGGAGGAGGAGTTGTGTCATGGAAATCCTCAAAACAAACGATTATAACCGGATCTACA
1 TTAC-TTGGGAGGAGGAGTTGTGTCATGGAAATCCTCAAAACAAACGATTATAACCAGATCTACA
34307554 ATAGAATCTGAGTTTGTAGCTCTAGACAAATCTAAAGAAGAGGCTAAAAAGATTCGAAACTTCTT
65 ATAGAATCTGAGTTTGTAGCTCTAGACAAATCTAAAGAAGAGGCTAAAAAGATTCGAAACTTCTT
34307619 GGAGGATATTCCTAACTGGCCAAAGCCTATGCCCACAATATGCATATATTGTGATAACTAAGAAA
130 GGAGGATATTCCTAACTGGCCAAAGCCTATGCCCACAATATGCATATATTGTGATAACTAAGAAA
*
34307684 CAATTGATAGAGCACAGAATGTAATGTATAATGGTAAGTTGAGACATATGCATCATCGACACAGT
195 CAATTGATAGAGCACAGAATGTAATGTATAATGGTAAGTTGAGACATATACATCATCGACACAGT
*
34307749 ACCGTTAGACAACTGATCTCAAATGGAGTTATCTCTATTTATTTTGTAAAATAAAAAGATAACAT
260 ACCGTTAGACAACTGATCTCAAATGGAGTTATCTCTATTTATTTTGTAAAAGAAAAAGATAACAT
* *
34307814 TGCGAATCTGCTAACTAAAGGATTAAATTGAGATTAGGTTGATTAAACATCAAAAGGAATGAGAC
325 TACGAATCTGCTAACTAAAGGATTAAATTGAGATTAGGTTGATAAAACATCAAAAGGAATGAGAC
*
34307879 TAAAGCCCATGAAAATTAAAGGTTCTATGTGAAGGAAAACCCAACCTAGTTGACTGAAGATCCTA
390 TAAAGCCCATGAAAATTAAAGGTTCTATGTGAAGGAAAACCCAACCTAGTTGACTGAAGATCCCA
34307944 AGATCTAGGTTTAAAGGGACAAC
455 AGATCTAGGTTTAAAGGGACAAC
*
34307967 TTACTTGGGAGGAGGAGTTGTGTCATGGAAATCCTTAAAACAAACGATTATAACCAGATCTACAA
1 TTACTTGGGAGGAGGAGTTGTGTCATGGAAATCCTCAAAACAAACGATTATAACCAGATCTACAA
* **
34308032 TAGAATCTGAGTTTGTAGCTCTAGACAAATCTAGAGAAGAGGCTAAATGGATTCGAAACTTCTTG
66 TAGAATCTGAGTTTGTAGCTCTAGACAAATCTAAAGAAGAGGCTAAAAAGATTCGAAACTTCTTG
* * *
34308097 GAGGATATTCCTAACTGGCCAAAGCCTGTGTCCACAATATGCCTATATTGTGATAACTAAGAAAC
131 GAGGATATTCCTAACTGGCCAAAGCCTATGCCCACAATATGCATATATTGTGATAACTAAGAAAC
* *
34308162 AATTGGTAGAGCACAGAATGTAATGTATAATGGTAAGTTGAGACATATACGTCATCGACACAGTA
196 AATTGATAGAGCACAGAATGTAATGTATAATGGTAAGTTGAGACATATACATCATCGACACAGTA
34308227 CCGTTAGACAACTGATCTCAAATGGAGTTATCTCTATTTATTTTGTAAAAGAAAAAGATAACATT
261 CCGTTAGACAACTGATCTCAAATGGAGTTATCTCTATTTATTTTGTAAAAGAAAAAGATAACATT
*
34308292 ACGAATCTGCTAACTAAAGGATTAAATTGAGATTAGGTTGATAAAACATCAAAAGGAATGGGACT
326 ACGAATCTGCTAACTAAAGGATTAAATTGAGATTAGGTTGATAAAACATCAAAAGGAATGAGACT
* *
34308357 AAAGCCCATGAAAATTAAAGGTTCTATGTGAAGGAAAACCCAGCCTAGTTGACTGGAGATCCCAA
391 AAAGCCCATGAAAATTAAAGGTTCTATGTGAAGGAAAACCCAACCTAGTTGACTGAAGATCCCAA
34308422 GATCTAGGTTTAAAGGGACAAC
456 GATCTAGGTTTAAAGGGACAAC
34308444 TTACTTG
1 TTACTTG
34308451 CATAGACCTT
Statistics
Matches: 466, Mismatches: 18, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
477 462 0.99
478 4 0.01
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.27
Consensus pattern (477 bp):
TTACTTGGGAGGAGGAGTTGTGTCATGGAAATCCTCAAAACAAACGATTATAACCAGATCTACAA
TAGAATCTGAGTTTGTAGCTCTAGACAAATCTAAAGAAGAGGCTAAAAAGATTCGAAACTTCTTG
GAGGATATTCCTAACTGGCCAAAGCCTATGCCCACAATATGCATATATTGTGATAACTAAGAAAC
AATTGATAGAGCACAGAATGTAATGTATAATGGTAAGTTGAGACATATACATCATCGACACAGTA
CCGTTAGACAACTGATCTCAAATGGAGTTATCTCTATTTATTTTGTAAAAGAAAAAGATAACATT
ACGAATCTGCTAACTAAAGGATTAAATTGAGATTAGGTTGATAAAACATCAAAAGGAATGAGACT
AAAGCCCATGAAAATTAAAGGTTCTATGTGAAGGAAAACCCAACCTAGTTGACTGAAGATCCCAA
GATCTAGGTTTAAAGGGACAAC
Found at i:34311659 original size:30 final size:30
Alignment explanation
Indices: 34311625--34311682 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
34311615 CATGTTTATG
*
34311625 TTATGGAGGTGAGTGATTCTTTCAAGTTGT
1 TTATGGAGGTGAGTAATTCTTTCAAGTTGT
*
34311655 TTATGGTGGTGAGTAATTCTTTCAAGTT
1 TTATGGAGGTGAGTAATTCTTTCAAGTT
34311683 AGCCAAAGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.21, C:0.07, G:0.28, T:0.45
Consensus pattern (30 bp):
TTATGGAGGTGAGTAATTCTTTCAAGTTGT
Found at i:34326023 original size:104 final size:104
Alignment explanation
Indices: 34325843--34326109 Score: 423
Period size: 104 Copynumber: 2.6 Consensus size: 104
34325833 TAACCGTTAT
* *
34325843 TGGTGGATCTCGCACTTAGCAC-CACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 TGGTGGATATCGCACTTAGCACAC-CCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
34325907 GAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
*
34325947 TGGTGGATATCGCACTTAGCACACCCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACACCCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
34326012 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* * **
34326051 TGGTGGATCA-CGCACATAGCACCACCC-ATAAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCA-CACCCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
34326110 TTTATATACA
Statistics
Matches: 152, Mismatches: 8, Indels: 6
0.92 0.05 0.04
Matches are distributed among these distances:
104 145 0.95
105 7 0.05
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.18
Consensus pattern (104 bp):
TGGTGGATATCGCACTTAGCACACCCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:34326471 original size:29 final size:29
Alignment explanation
Indices: 34326438--34326501 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
34326428 TAATCCACCA
34326438 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
34326467 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
34326497 CCCAA
1 CCCAA
34326502 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:34326475 original size:30 final size:30
Alignment explanation
Indices: 34326445--34326501 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
34326435 CCACCCAACT
34326445 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
34326474 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
34326502 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:34333496 original size:26 final size:26
Alignment explanation
Indices: 34333466--34333516 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
34333456 ACCAATGAAC
*
34333466 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
34333492 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
34333517 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:34333550 original size:103 final size:104
Alignment explanation
Indices: 34333329--34333594 Score: 428
Period size: 103 Copynumber: 2.6 Consensus size: 104
34333319 TAACCGTTAT
* * *
34333329 TGGTGGATCTCGCACTTAGCACCACCACTGAATCGGGGAATCATCACTTAGCAACCCCTCGGGGG
1 TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
34333394 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
*
34333433 TGGTGGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTC-GGG
1 TGGTGGATCA-CGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
34333496 GAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* * * **
34333536 TGGTGGATCACGCACATAGCACCACCCATAAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
34333595 TTTATATACA
Statistics
Matches: 150, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
103 94 0.63
104 56 0.37
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.19
Consensus pattern (104 bp):
TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:34333956 original size:29 final size:29
Alignment explanation
Indices: 34333923--34333986 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
34333913 TAATCCACCA
34333923 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
34333952 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
34333982 CCCAA
1 CCCAA
34333987 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:34333960 original size:30 final size:30
Alignment explanation
Indices: 34333930--34333986 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
34333920 CCACCCAACT
34333930 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
34333959 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
34333987 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:34335278 original size:25 final size:24
Alignment explanation
Indices: 34335249--34335307 Score: 73
Period size: 25 Copynumber: 2.4 Consensus size: 24
34335239 TCCTGTACAT
* *
34335249 GTATGCTCATACGATCTCTACATCG
1 GTATGCTCATACGAGCTCTAAAT-G
*
34335274 GTATGCTCTTACGAGCTCTAAATG
1 GTATGCTCATACGAGCTCTAAATG
*
34335298 GTAAGCTCAT
1 GTATGCTCAT
34335308 CTGCACTGAA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 9 0.31
25 20 0.69
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (24 bp):
GTATGCTCATACGAGCTCTAAATG
Found at i:34335341 original size:25 final size:25
Alignment explanation
Indices: 34335313--34335366 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
34335303 CTCATCTGCA
* *
34335313 CTGAATAACAGTAAGCTCCTTCGAG
1 CTGAATAACAGTAAGCTCATACGAG
**
34335338 CTGAATAATGGTAAGCTCATACGAG
1 CTGAATAACAGTAAGCTCATACGAG
34335363 CTGA
1 CTGA
34335367 GTATCGGTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.33, C:0.20, G:0.22, T:0.24
Consensus pattern (25 bp):
CTGAATAACAGTAAGCTCATACGAG
Found at i:34335375 original size:25 final size:24
Alignment explanation
Indices: 34335323--34335400 Score: 68
Period size: 25 Copynumber: 3.2 Consensus size: 24
34335313 CTGAATAACA
* *
34335323 GTAAGCTCCTTCGAGCTGAATAAT-G
1 GTAAGCTCATACGAGCTG-AT-ATCG
34335348 GTAAGCTCATACGAGCTGAGTATCG
1 GTAAGCTCATACGAGCTGA-TATCG
* ** *
34335373 GTAACCTCATATAAGCTGAAATCG
1 GTAAGCTCATACGAGCTGATATCG
34335397 GTAA
1 GTAA
34335401 CCCTAATGAC
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
24 11 0.24
25 34 0.76
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (24 bp):
GTAAGCTCATACGAGCTGATATCG
Found at i:34342967 original size:25 final size:25
Alignment explanation
Indices: 34342896--34342996 Score: 76
Period size: 25 Copynumber: 4.0 Consensus size: 25
34342886 TACTAGTTAT
* ** *
34342896 AAACGGTAAGCTCCTTTGAGTTGAA
1 AAACGGTAAGCTCATACGAGCTGAA
* * * * *
34342921 TAACAGTAAGCTCCTCCTAGCTGAA
1 AAACGGTAAGCTCATACGAGCTGAA
* *
34342946 AAACGGTAAGCTCATGCGAGCTGAG
1 AAACGGTAAGCTCATACGAGCTGAA
* * *
34342971 TATCGGTAAGCTCATACAAGCTGAA
1 AAACGGTAAGCTCATACGAGCTGAA
34342996 A
1 A
34342997 TCGGTAACCC
Statistics
Matches: 58, Mismatches: 18, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
25 58 1.00
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.23
Consensus pattern (25 bp):
AAACGGTAAGCTCATACGAGCTGAA
Found at i:34349757 original size:29 final size:29
Alignment explanation
Indices: 34349685--34349763 Score: 79
Period size: 29 Copynumber: 2.7 Consensus size: 29
34349675 ACTATGTGTT
*
34349685 GGTGATTATATTTATTAGATACTATGTACC
1 GGTGATCATA-TTATTAGATACTATGTACC
* * * *
34349715 GAT-AACTATTTTATTAGGTACTATGTACC
1 GGTGATC-ATATTATTAGATACTATGTACC
*
34349744 GGTGATCATATTATCAGATA
1 GGTGATCATATTATTAGATA
34349764 TTTTGTATTG
Statistics
Matches: 37, Mismatches: 10, Indels: 5
0.71 0.19 0.10
Matches are distributed among these distances:
29 31 0.84
30 6 0.16
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.41
Consensus pattern (29 bp):
GGTGATCATATTATTAGATACTATGTACC
Found at i:34356022 original size:28 final size:27
Alignment explanation
Indices: 34355955--34356024 Score: 86
Period size: 28 Copynumber: 2.6 Consensus size: 27
34355945 GGAATATGAT
* *
34355955 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTAACCATGCA
* *
34355982 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TAACCATGCA
*
34356010 GCACTAAGGGTGCGA
1 GCACTAAGTGTGCGA
34356025 TTTGATTACG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 17 0.46
28 20 0.54
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTAACCATGCA
Found at i:34356040 original size:55 final size:53
Alignment explanation
Indices: 34355900--34356051 Score: 178
Period size: 55 Copynumber: 2.8 Consensus size: 53
34355890 TAAATTGTAC
* * *
34355900 AGCACTAAGTGTGCGATTCGATTATGTTGCACTAAGTGTGCGAAAGGAATATG
1 AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAACGAATATG
* ** * * *
34355953 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAATCTAACTATG
1 A-GCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAACGAA-TATG
* *
34356008 TAGCACTAAGGGTGCGATTTGATTACGTGGCACTAAGTGTGCGA
1 -AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGA
34356052 GTTGAGTGAA
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
53 1 0.01
54 39 0.48
55 40 0.49
56 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.27
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAACGAATATG
Found at i:34356056 original size:27 final size:27
Alignment explanation
Indices: 34355901--34356056 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
34355891 AAATTGTACA
* *
34355901 GCACTAAGTGTGCG-ATTCGATTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
** *
34355928 GCACTAAGTGTGCGAAAGGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
34355955 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
34355982 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * * *
34356010 GCACTAAGGGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
34356037 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
34356057 GTGAATAGCA
Statistics
Matches: 105, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
27 82 0.78
28 23 0.22
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:34364126 original size:28 final size:27
Alignment explanation
Indices: 34364059--34364128 Score: 86
Period size: 28 Copynumber: 2.6 Consensus size: 27
34364049 GGAATATGAT
* *
34364059 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTAACCATGCA
* *
34364086 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TAACCATGCA
*
34364114 GCACTAAGGGTGCGA
1 GCACTAAGTGTGCGA
34364129 TTTGATTACG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 17 0.46
28 20 0.54
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTAACCATGCA
Found at i:34364144 original size:55 final size:53
Alignment explanation
Indices: 34364004--34364155 Score: 178
Period size: 55 Copynumber: 2.8 Consensus size: 53
34363994 TAAATTGTAC
* * *
34364004 AGCACTAAGTGTGCGATTCGATTATGTTGCACTAAGTGTGCGAAAGGAATATG
1 AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAACGAATATG
* ** * * *
34364057 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAATCTAACTATG
1 A-GCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAACGAA-TATG
* *
34364112 TAGCACTAAGGGTGCGATTTGATTACGTGGCACTAAGTGTGCGA
1 -AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGA
34364156 GTTGAGTGAA
Statistics
Matches: 81, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
53 1 0.01
54 39 0.48
55 40 0.49
56 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.27
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAAACGAATATG
Found at i:34364160 original size:27 final size:27
Alignment explanation
Indices: 34364005--34364160 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
34363995 AAATTGTACA
* *
34364005 GCACTAAGTGTGCG-ATTCGATTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
** *
34364032 GCACTAAGTGTGCGAAAGGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
34364059 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* *
34364086 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * * *
34364114 GCACTAAGGGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
34364141 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
34364161 GTGAATAGCA
Statistics
Matches: 105, Mismatches: 20, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
27 82 0.78
28 23 0.22
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:34373610 original size:53 final size:54
Alignment explanation
Indices: 34373550--34373699 Score: 173
Period size: 53 Copynumber: 2.8 Consensus size: 54
34373540 TAAATTGTAC
*
34373550 AGCACTAAGTGTGCGATTCGATTATGTTGCACTAAGTGTGCGAA-AGAA-TATG-
1 AGCACTAAGTGTGCGATT-GATTATGTGGCACTAAGTGTGCGAATAGAACTATGT
** * **
34373602 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAATCTAACTATGT
1 A-GCACTAAGTGTGCG-ATTGATTATGTGGCACTAAGTGTGCGAATAGAACTATGT
*
34373658 AGCACTAAG-GTGCGATTTGATTACGTGGCACTAAGTGTGCGA
1 AGCACTAAGTGTGCGA-TTGATTATGTGGCACTAAGTGTGCGA
34373700 GTTGATGAAT
Statistics
Matches: 82, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
52 1 0.01
53 36 0.44
54 32 0.39
55 12 0.15
56 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTGATTATGTGGCACTAAGTGTGCGAATAGAACTATGT
Found at i:34373704 original size:27 final size:26
Alignment explanation
Indices: 34373551--34373705 Score: 134
Period size: 27 Copynumber: 5.8 Consensus size: 26
34373541 AAATTGTACA
*
34373551 GCACTAAGTGTGCGATTCGATTATGTT
1 GCACTAAGTGTGCGATT-GATTATGTG
** *
34373578 GCACTAAGTGTGCGAAAGAATATGAT-
1 GCACTAAGTGTGCGATTGATTATG-TG
** *
34373604 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGATTATGTG
* * *
34373631 GCACTAAGTGTGCGAATCTAACTATGTA
1 GCACTAAGTGTGCG-AT-TGATTATGTG
*
34373659 GCACTAAG-GTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGATTATGTG
34373685 GCACTAAGTGTGCGAGTTGAT
1 GCACTAAGTGTGCGA-TTGAT
34373706 GAATAGCACT
Statistics
Matches: 105, Mismatches: 17, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
26 35 0.33
27 56 0.53
28 14 0.13
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGATTATGTG
Found at i:34373714 original size:26 final size:27
Alignment explanation
Indices: 34373657--34373724 Score: 77
Period size: 26 Copynumber: 2.6 Consensus size: 27
34373647 TCTAACTATG
* * *
34373657 TAGCACTAAG-GTGCGATTTGATTACG
1 TAGCACTAAGTGTGCGAGTTGATGACA
*
34373683 TGGCACTAAGTGTGCGAGTTGATGA-A
1 TAGCACTAAGTGTGCGAGTTGATGACA
*
34373709 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
34373725 GGTTCAATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 23 0.66
27 12 0.34
ACGTcount: A:0.25, C:0.15, G:0.32, T:0.28
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGAGTTGATGACA
Found at i:34385182 original size:13 final size:13
Alignment explanation
Indices: 34385160--34385190 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
34385150 GTTTTAATTA
34385160 ATTAAGTAAAGTG
1 ATTAAGTAAAGTG
*
34385173 ATTAATTAAAGTG
1 ATTAAGTAAAGTG
34385186 ATTAA
1 ATTAA
34385191 ATTATATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.16, T:0.35
Consensus pattern (13 bp):
ATTAAGTAAAGTG
Found at i:34398273 original size:15 final size:16
Alignment explanation
Indices: 34398244--34398273 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
34398234 CAAACATGCT
34398244 TTAACACATTATCAAA
1 TTAACACATTATCAAA
34398260 TTAACACA-TATCAA
1 TTAACACATTATCAA
34398274 CAACGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:34405616 original size:25 final size:25
Alignment explanation
Indices: 34405582--34405647 Score: 132
Period size: 25 Copynumber: 2.6 Consensus size: 25
34405572 CATGTACATA
34405582 TATGCTCACACGAGCTATGAATAAG
1 TATGCTCACACGAGCTATGAATAAG
34405607 TATGCTCACACGAGCTATGAATAAG
1 TATGCTCACACGAGCTATGAATAAG
34405632 TATGCTCACACGAGCT
1 TATGCTCACACGAGCT
34405648 GTGGGTCAGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (25 bp):
TATGCTCACACGAGCTATGAATAAG
Found at i:34413264 original size:5 final size:5
Alignment explanation
Indices: 34413254--34413291 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
34413244 CAACTCTTTT
*
34413254 TTCTC TTCTC TTCTC TTCTC TTCTC TTCT- TCCTC TTCT
1 TTCTC TTCTC TTCTC TTCTC TTCTC TTCTC TTCTC TTCT
34413292 TCTACTTCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
4 3 0.10
5 27 0.90
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (5 bp):
TTCTC
Found at i:34413274 original size:15 final size:14
Alignment explanation
Indices: 34413247--34413291 Score: 63
Period size: 14 Copynumber: 3.1 Consensus size: 14
34413237 ACAAATACAA
*
34413247 CTCTTTTTTCTCTT
1 CTCTTCTTTCTCTT
34413261 CTCTTCTCTTCTCTT
1 CTCTTCT-TTCTCTT
*
34413276 CTCTTCTTCCTCTT
1 CTCTTCTTTCTCTT
34413290 CT
1 CT
34413292 TCTACTTCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
14 14 0.50
15 14 0.50
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (14 bp):
CTCTTCTTTCTCTT
Found at i:34413777 original size:14 final size:15
Alignment explanation
Indices: 34413760--34413789 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
34413750 CATAATTCAA
34413760 AAAATAT-ATTTTAC
1 AAAATATAATTTTAC
34413774 AAAATATAATTTTAC
1 AAAATATAATTTTAC
34413789 A
1 A
34413790 TTTCAAACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.53, C:0.07, G:0.00, T:0.40
Consensus pattern (15 bp):
AAAATATAATTTTAC
Found at i:34416497 original size:25 final size:24
Alignment explanation
Indices: 34416469--34416517 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
34416459 TTTTTTTTTT
*
34416469 GAAAAAAAATTATTCAAAAAAAAAA
1 GAAAAAAAA-GATTCAAAAAAAAAA
*
34416494 GAAAACAAAGATTCAAAAAAAAAA
1 GAAAAAAAAGATTCAAAAAAAAAA
34416518 AGCAAGCAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 14 0.64
25 8 0.36
ACGTcount: A:0.76, C:0.06, G:0.06, T:0.12
Consensus pattern (24 bp):
GAAAAAAAAGATTCAAAAAAAAAA
Found at i:34417252 original size:3 final size:3
Alignment explanation
Indices: 34417244--34417322 Score: 58
Period size: 3 Copynumber: 26.7 Consensus size: 3
34417234 TTTAGTCCCG
* * *
34417244 TTA TTA TTA TTA TT- TTA TTA TTA TTA TCA -AA CTAA TTA GTT- TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA -TTA TTA
* *
34417288 TCA TTA TTA -AA TTTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TT
34417323 TGCTCATTTA
Statistics
Matches: 62, Mismatches: 7, Indels: 14
0.75 0.08 0.17
Matches are distributed among these distances:
2 6 0.10
3 51 0.82
4 5 0.08
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:34419329 original size:27 final size:27
Alignment explanation
Indices: 34419298--34419475 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
34419288 TAAATTGTAC
34419298 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
34419325 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
34419351 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
34419379 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
34419407 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
34419434 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
34419461 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
34419476 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:34419412 original size:82 final size:81
Alignment explanation
Indices: 34419299--34419454 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
34419289 AAATTGTACA
* *
34419299 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
34419363 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
34419380 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
34419445 TGCGAGTTGA
65 TGCGAATTGA
34419455 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:34419466 original size:82 final size:81
Alignment explanation
Indices: 34419295--34419475 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
34419285 GATTAAATTG
* *
34419295 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
34419360 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
34419376 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
34419440 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
34419458 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
34419476 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:34420939 original size:18 final size:18
Alignment explanation
Indices: 34420918--34420980 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
34420908 CATACATACT
*
34420918 TATATATTCTATATATTC
1 TATATATTCTATATATTA
*
34420936 TATATATTTTATA-ACTTA
1 TATATATTCTATATA-TTA
*
34420954 TATACATATCTATATATATA
1 TATATAT-TCTATATAT-TA
*
34420974 TTTATAT
1 TATATAT
34420981 ACATTTTTTA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
17 1 0.03
18 20 0.57
19 6 0.17
20 8 0.23
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (18 bp):
TATATATTCTATATATTA
Found at i:34420941 original size:11 final size:9
Alignment explanation
Indices: 34420918--34420970 Score: 54
Period size: 9 Copynumber: 5.8 Consensus size: 9
34420908 CATACATACT
34420918 TATATATTC
1 TATATATTC
34420927 TATATATTC
1 TATATATTC
*
34420936 TATATATTT
1 TATATATTC
*
34420945 TATA-ACTTA
1 TATATA-TTC
*
34420954 TATACATATC
1 TATATAT-TC
34420964 TATATAT
1 TATATAT
34420971 ATATTTATAT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
8 1 0.03
9 28 0.76
10 8 0.22
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (9 bp):
TATATATTC
Found at i:34421317 original size:20 final size:20
Alignment explanation
Indices: 34421282--34421319 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
34421272 TTACTCATAT
34421282 TATTTTTATTCACATTATCA
1 TATTTTTATTCACATTATCA
34421302 TATTTATTATTC-CATTAT
1 TATTT-TTATTCACATTAT
34421320 GCATGTTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.29, C:0.13, G:0.00, T:0.58
Consensus pattern (20 bp):
TATTTTTATTCACATTATCA
Found at i:34421593 original size:108 final size:108
Alignment explanation
Indices: 34421353--34421665 Score: 372
Period size: 106 Copynumber: 2.9 Consensus size: 108
34421343 AAGGAAAATT
* * **
34421353 TTTCTAAA-TAAGTCAATATTTTGCGTTTGAAAATTCGAGAAAACGTGTTCTAATGTGCTGGGTT
1 TTTC-AAAGTAAGACAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTT
*
34421417 TCGATTTTT-T-GTTCGACCAAATAGATAAATAT-CTTTTTAAAA
65 TCGATTTTTCTCGTTCGACCAAATA-ACAAATATCCTTTTTAAAA
* *
34421459 TTTCAAAGTAAGACGATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGATTT
1 TTTCAAAGTAAGACAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
*
34421524 CGATTTTTCTCGTTCGACCAAATAACCAAATATCCTTTTT-TAA
66 CGATTTTTCTCGTTCGACCAAATAA-CAAATATCCTTTTTAAAA
** ** * *
34421567 TTTTGAAGTAAGGTAATATTTTGCGTTTGGAAATTC-AAATAAACGTGCCCTAATGTGCCGGGTT
1 TTTCAAAGTAAGACAATATTTTGCGTTTGGAAATTCGAGA-AAACGTGCCCTAATGTGCTGGGTT
* * *
34421631 TCGA--TTTCCCGTTTGACCAAATAGTCAAATATCCT
65 TCGATTTTTCTCGTTCGACCAAATA-ACAAATATCCT
34421666 CTTAAATCTC
Statistics
Matches: 181, Mismatches: 19, Indels: 14
0.85 0.09 0.07
Matches are distributed among these distances:
105 3 0.02
106 90 0.50
107 4 0.02
108 78 0.43
109 6 0.03
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.37
Consensus pattern (108 bp):
TTTCAAAGTAAGACAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTT
CGATTTTTCTCGTTCGACCAAATAACAAATATCCTTTTTAAAA
Found at i:34421881 original size:21 final size:22
Alignment explanation
Indices: 34421856--34421899 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
34421846 TCGTGGACCA
* *
34421856 AAATCGTTTTTTAATAA-AATC
1 AAATCGTTTATTAAAAACAATC
34421877 AAATCGTTTATTAAAAACAATC
1 AAATCGTTTATTAAAAACAATC
34421899 A
1 A
34421900 CTTTTTAAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.48, C:0.11, G:0.05, T:0.36
Consensus pattern (22 bp):
AAATCGTTTATTAAAAACAATC
Found at i:34433245 original size:20 final size:20
Alignment explanation
Indices: 34433197--34433248 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
34433187 ATTTTCTCTT
**
34433197 TTCATCAAGAATATCAATAC
1 TTCATCAATTATATCAATAC
34433217 TTCATCAATTATATCAATAC
1 TTCATCAATTATATCAATAC
34433237 TTCATCAATTAT
1 TTCATCAATTAT
34433249 CATACAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.40, C:0.19, G:0.02, T:0.38
Consensus pattern (20 bp):
TTCATCAATTATATCAATAC
Found at i:34440195 original size:20 final size:20
Alignment explanation
Indices: 34440147--34440198 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
34440137 ATTTTCTCTT
**
34440147 TTCATCAAGAATATCAATAC
1 TTCATCAATTATATCAATAC
34440167 TTCATCAATTATATCAATAC
1 TTCATCAATTATATCAATAC
34440187 TTCATCAATTAT
1 TTCATCAATTAT
34440199 CATACAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.40, C:0.19, G:0.02, T:0.38
Consensus pattern (20 bp):
TTCATCAATTATATCAATAC
Found at i:34443468 original size:56 final size:55
Alignment explanation
Indices: 34443382--34443489 Score: 189
Period size: 56 Copynumber: 1.9 Consensus size: 55
34443372 GTATCCATTG
*
34443382 GATGATAAATCATCACTTTTAATTTGAATAGTGCTTACGAATAATTAAATTTGTAA
1 GATGATAAATCATCACTTTTAATTTGAATAGTGCTCACGAATAATT-AATTTGTAA
*
34443438 GATGATAAATCATCACTTTTAATTTGAATAGTGCTCATGAATAATTAATTTG
1 GATGATAAATCATCACTTTTAATTTGAATAGTGCTCACGAATAATTAATTTG
34443490 CAATCTACAA
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
55 6 0.12
56 44 0.88
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (55 bp):
GATGATAAATCATCACTTTTAATTTGAATAGTGCTCACGAATAATTAATTTGTAA
Found at i:34448480 original size:25 final size:26
Alignment explanation
Indices: 34448452--34448525 Score: 91
Period size: 25 Copynumber: 2.9 Consensus size: 26
34448442 TATGCCCATA
* *
34448452 CGAG-CATGTAATCAGGAAGCTC-TTT
1 CGAGCCATGTAAT-GGGAAGCTCATGT
*
34448477 CGAGCCATATAATGGGAAGCTCATGT
1 CGAGCCATGTAATGGGAAGCTCATGT
34448503 -GAGCCATGTAATGGGAAGCTCAT
1 CGAGCCATGTAATGGGAAGCTCAT
34448526 AAGAGTCGTA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
25 34 0.79
26 9 0.21
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (26 bp):
CGAGCCATGTAATGGGAAGCTCATGT
Found at i:34448594 original size:25 final size:25
Alignment explanation
Indices: 34448566--34448705 Score: 116
Period size: 25 Copynumber: 5.6 Consensus size: 25
34448556 CAATATCGGA
34448566 AAGCTCTGGAGAGCCATTAATCGAG
1 AAGCTCTGGAGAGCCATTAATCGAG
34448591 AAGCTC-GTGAGAGCCAATT-ATC-ATG
1 AAGCTCTG-GAGAGCC-ATTAATCGA-G
* *
34448616 AAGCTCAT--ACGAGCCATAAAT-GGG
1 AAGCTC-TGGA-GAGCCATTAATCGAG
* * *
34448640 AAGCTCTGAAGAGCTATTAATCGGG
1 AAGCTCTGGAGAGCCATTAATCGAG
34448665 AAGCTCAT-GAGAGCCAATT-ATCGAG
1 AAGCTC-TGGAGAGCC-ATTAATCGAG
34448690 AAGCTCTGGAGAGCCA
1 AAGCTCTGGAGAGCCA
34448706 AATAACGGGA
Statistics
Matches: 94, Mismatches: 7, Indels: 29
0.72 0.05 0.22
Matches are distributed among these distances:
23 1 0.01
24 23 0.24
25 63 0.67
26 7 0.07
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (25 bp):
AAGCTCTGGAGAGCCATTAATCGAG
Found at i:34448668 original size:49 final size:48
Alignment explanation
Indices: 34448460--34448728 Score: 151
Period size: 49 Copynumber: 5.4 Consensus size: 48
34448450 TACGAGCATG
* * * * * *
34448460 TAATCAGGAAGCTCTTTCGAGCCATATAATGGGAAGCTCATGTGAGCCAT
1 TAATCGGGAAGCTC-ATAGAGCCATA-AATGAGAAGCTCATGAGAGCAAT
* * * *
34448510 GTAAT-GGGAAGCTCATAAGAGTCGTAATTGAGAAGCTCATGCGAGCCAA-
1 -TAATCGGGAAGCTCAT-AGAGCCATAAATGAGAAGCTCATGAGAG-CAAT
* * *
34448559 T-ATCGGAAAGCTC-TGGAGAGCCATTAATCGAGAAGCTCGTGAGAGCCAAT
1 TAATCGGGAAGCTCAT--AGAGCCATAAAT-GAGAAGCTCATGAGAG-CAAT
** * *
34448609 T-ATCATGAAGCTCATACGAGCCATAAATGGGAAGCTC-TGAAGAGCTAT
1 TAATCGGGAAGCTCATA-GAGCCATAAATGAGAAGCTCATG-AGAGCAAT
* *
34448657 TAATCGGGAAGCTCATGAGAGCCA-ATTATCGAGAAGCTC-TGGAGAGCCAAA
1 TAATCGGGAAGCTCAT-AGAGCCATA-AAT-GAGAAGCTCAT-GAGAG-CAAT
34448708 TAA-CGGGAAGCTCATAAGAGC
1 TAATCGGGAAGCTCAT-AGAGC
34448729 TATGGTGTGT
Statistics
Matches: 173, Mismatches: 30, Indels: 31
0.74 0.13 0.13
Matches are distributed among these distances:
47 3 0.02
48 24 0.14
49 68 0.39
50 67 0.39
51 11 0.06
ACGTcount: A:0.34, C:0.19, G:0.26, T:0.21
Consensus pattern (48 bp):
TAATCGGGAAGCTCATAGAGCCATAAATGAGAAGCTCATGAGAGCAAT
Found at i:34448704 original size:74 final size:76
Alignment explanation
Indices: 34448478--34448728 Score: 247
Period size: 74 Copynumber: 3.4 Consensus size: 76
34448468 AAGCTCTTTC
* * * * * *
34448478 GAGCCATATAATGGGAAGCTCATG-TGAGCCATGTAAT-GGGAAGCTCATAAGAGTC-GTAATTG
1 GAGCCATATAATGGGAAGCTCATGAAGAGCCAT-TAATCGGGAAGCTCATGAGAGCCAATTATCG
*
34448540 AGAAGCTCATGC
65 AGAAGCTCATGA
* * * *
34448552 GAGCCA-AT-ATCGGAAAGCTC-TGGAGAGCCATTAATCGAGAAGCTCGTGAGAGCCAATTATC-
1 GAGCCATATAAT-GGGAAGCTCATGAAGAGCCATTAATCGGGAAGCTCATGAGAGCCAATTATCG
34448613 ATGAAGCTCAT-A
65 A-GAAGCTCATGA
*
34448625 CGAGCCATA-AATGGGAAGCTC-TGAAGAGCTATTAATCGGGAAGCTCATGAGAGCCAATTATCG
1 -GAGCCATATAATGGGAAGCTCATGAAGAGCCATTAATCGGGAAGCTCATGAGAGCCAATTATCG
34448688 AGAAGCTC-TGGA
65 AGAAGCTCAT-GA
* *
34448700 GAGCCAAATAACGGGAAGCTCAT-AAGAGC
1 GAGCCATATAATGGGAAGCTCATGAAGAGC
34448729 TATGGTGTGT
Statistics
Matches: 147, Mismatches: 17, Indels: 25
0.78 0.09 0.13
Matches are distributed among these distances:
72 8 0.05
73 33 0.22
74 83 0.56
75 22 0.15
76 1 0.01
ACGTcount: A:0.34, C:0.19, G:0.27, T:0.20
Consensus pattern (76 bp):
GAGCCATATAATGGGAAGCTCATGAAGAGCCATTAATCGGGAAGCTCATGAGAGCCAATTATCGA
GAAGCTCATGA
Found at i:34448706 original size:25 final size:25
Alignment explanation
Indices: 34448539--34448720 Score: 109
Period size: 25 Copynumber: 7.4 Consensus size: 25
34448529 AGTCGTAATT
*
34448539 GAGAAGCTCAT-GCGAGCCAA-TATC
1 GAGAAGCTC-TGGAGAGCCAATTATC
34448563 G-GAAAGCTCTGGAGAGCC-ATTAATC
1 GAG-AAGCTCTGGAGAGCCAATT-ATC
34448588 GAGAAGCTC-GTGAGAGCCAATTATC
1 GAGAAGCTCTG-GAGAGCCAATTATC
*
34448613 -ATGAAGCTCAT--ACGAGCC-ATAAAT-
1 GA-GAAGCTC-TGGA-GAGCCAAT-TATC
* * *
34448637 GGGAAGCTCTGAAGAG-CTATTAATC
1 GAGAAGCTCTGGAGAGCCAATT-ATC
*
34448662 GGGAAGCTCAT-GAGAGCCAATTATC
1 GAGAAGCTC-TGGAGAGCCAATTATC
* *
34448687 GAGAAGCTCTGGAGAGCCAAATAAC
1 GAGAAGCTCTGGAGAGCCAATTATC
*
34448712 GGGAAGCTC
1 GAGAAGCTC
34448721 ATAAGAGCTA
Statistics
Matches: 127, Mismatches: 10, Indels: 41
0.71 0.06 0.23
Matches are distributed among these distances:
23 5 0.04
24 34 0.27
25 79 0.62
26 9 0.07
ACGTcount: A:0.34, C:0.20, G:0.27, T:0.19
Consensus pattern (25 bp):
GAGAAGCTCTGGAGAGCCAATTATC
Found at i:34448865 original size:8 final size:8
Alignment explanation
Indices: 34448852--34448876 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
34448842 ATACTTTCGG
34448852 ATATGTTT
1 ATATGTTT
34448860 ATATGTTT
1 ATATGTTT
34448868 ATATGTTT
1 ATATGTTT
34448876 A
1 A
34448877 AGTAATCATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (8 bp):
ATATGTTT
Found at i:34451372 original size:56 final size:55
Alignment explanation
Indices: 34451286--34451393 Score: 189
Period size: 56 Copynumber: 1.9 Consensus size: 55
34451276 GTATCCATTG
*
34451286 GATGATAAATCATCACTTTTACTTTGAATAGTGCTAATGAATAATTAAATTTGTAA
1 GATGATAAATCATCACTTTTAATTTGAATAGTGCTAATGAATAATT-AATTTGTAA
*
34451342 GATGATAAATCATCACTTTTAATTTGAATAGTGCTCATGAATAATTAATTTG
1 GATGATAAATCATCACTTTTAATTTGAATAGTGCTAATGAATAATTAATTTG
34451394 CAATCTATAA
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
55 6 0.12
56 44 0.88
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (55 bp):
GATGATAAATCATCACTTTTAATTTGAATAGTGCTAATGAATAATTAATTTGTAA
Found at i:34457788 original size:2 final size:2
Alignment explanation
Indices: 34457781--34457827 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
34457771 GAAGGACAAA
34457781 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
34457823 AG AG A
1 AG AG A
34457828 AAGAAGTACC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:34461918 original size:48 final size:50
Alignment explanation
Indices: 34461856--34462088 Score: 213
Period size: 50 Copynumber: 4.7 Consensus size: 50
34461846 GGGATGAGAC
* **
34461856 CCCATGTAAGACCATGTTTGGGACATGGCATTGG-AATTA-ATGAGAGGT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCAACGACATGAGAGGT
* * * *
34461904 CCCACGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCAACGACATGAGAGGT
** * * * * **
34461954 CCCCCGTAAGATCATGTCTGGGACATGGCATGGGCACCGATATGAGAACT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCAACGACATGAGAGGT
* * * * * **
34462004 CCCATGTAAGACCATATCTGGGATATGACATTGG-AA-GTACAGGAAACAT
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCAACG-ACATGAGAGGT
* *
34462053 CCCATGTAAGACCATGTATGGGACATGGCTTTGGCA
1 CCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
34462089 TGTTATTGTC
Statistics
Matches: 150, Mismatches: 31, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
48 32 0.21
49 38 0.25
50 80 0.53
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.22
Consensus pattern (50 bp):
CCCATGTAAGACCATGTCTGGGACATGGCATTGGCAACGACATGAGAGGT
Found at i:34462315 original size:20 final size:20
Alignment explanation
Indices: 34462290--34462338 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
34462280 TGAGTTATTT
34462290 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGCAAGTAAGTAAAC
*
34462310 AAGTAAG-AGAGTAAGTAAAG
1 AAGTAAGCA-AGTAAGTAAAC
34462330 AAG-AAGCAA
1 AAGTAAGCAA
34462339 AGACCATGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.57, C:0.06, G:0.24, T:0.12
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:34466190 original size:20 final size:20
Alignment explanation
Indices: 34466151--34466255 Score: 72
Period size: 20 Copynumber: 5.2 Consensus size: 20
34466141 ACACCAGGGA
*
34466151 GCACCGTAGTGC-TATCAGAG
1 GCACCGTAGTGCAAAT-AGAG
34466171 GCACCGTAGTGCAAATAGAG
1 GCACCGTAGTGCAAATAGAG
* *
34466191 GTA-CGATTGTGC-AATCAGAG
1 GCACCG-TAGTGCAAAT-AGAG
* *
34466211 GCACTGGAGTGCAAATAGAG
1 GCACCGTAGTGCAAATAGAG
* ** * *
34466231 ACACCAAAGTGTAAACAGAG
1 GCACCGTAGTGCAAATAGAG
34466251 GCACC
1 GCACC
34466256 AAAGTCCAAG
Statistics
Matches: 66, Mismatches: 14, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
19 5 0.08
20 55 0.83
21 6 0.09
ACGTcount: A:0.34, C:0.21, G:0.29, T:0.16
Consensus pattern (20 bp):
GCACCGTAGTGCAAATAGAG
Found at i:34470783 original size:36 final size:36
Alignment explanation
Indices: 34470741--34470813 Score: 103
Period size: 36 Copynumber: 2.0 Consensus size: 36
34470731 TCAATTTATC
*
34470741 TCAGCCTACTTCTTTTC-ATTGCAGATATCTTCAATT
1 TCAGCCTACTTC-TTTCAAATGCAGATATCTTCAATT
* *
34470777 TCAGCCTATTTCTTTCAAATGCAGATATCTTCCATT
1 TCAGCCTACTTCTTTCAAATGCAGATATCTTCAATT
34470813 T
1 T
34470814 TATGTGCTCG
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
35 4 0.12
36 29 0.88
ACGTcount: A:0.23, C:0.25, G:0.08, T:0.44
Consensus pattern (36 bp):
TCAGCCTACTTCTTTCAAATGCAGATATCTTCAATT
Found at i:34473839 original size:20 final size:20
Alignment explanation
Indices: 34473813--34473860 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
34473803 TTCCATATTT
34473813 CAGAGGCACCATAGTGCTTA
1 CAGAGGCACCATAGTGCTTA
*
34473833 TAGAGGCACCATAGTGCTTA
1 CAGAGGCACCATAGTGCTTA
34473853 CAGAGGCA
1 CAGAGGCA
34473861 TGAATGTGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.27, T:0.19
Consensus pattern (20 bp):
CAGAGGCACCATAGTGCTTA
Found at i:34473980 original size:20 final size:20
Alignment explanation
Indices: 34473869--34473982 Score: 113
Period size: 20 Copynumber: 5.7 Consensus size: 20
34473859 CATGAATGTG
*
34473869 CAAACAAGG-GTACCGAAGTA
1 CAAAC-AGGAGTACCAAAGTA
* * * *
34473889 CAAAAAGGGGAACTAAAGTA
1 CAAACAGGAGTACCAAAGTA
* *
34473909 AAAAAAGGAGTACCAAAGTA
1 CAAACAGGAGTACCAAAGTA
*
34473929 CAAACAGGGGTACCAAAGTA
1 CAAACAGGAGTACCAAAGTA
* *
34473949 CAAGCAGGAGTACCGAAGTA
1 CAAACAGGAGTACCAAAGTA
*
34473969 CAAACAGAAGTACC
1 CAAACAGGAGTACC
34473983 TGTAACAACC
Statistics
Matches: 77, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
19 3 0.04
20 74 0.96
ACGTcount: A:0.49, C:0.18, G:0.24, T:0.10
Consensus pattern (20 bp):
CAAACAGGAGTACCAAAGTA
Found at i:34473982 original size:40 final size:40
Alignment explanation
Indices: 34473874--34473975 Score: 134
Period size: 40 Copynumber: 2.6 Consensus size: 40
34473864 ATGTGCAAAC
* * *
34473874 AAGG-GTACCGAAGTACAAAAAGGGGAACTAAAGTAAAAA
1 AAGGAGTACCGAAGTACAAACAGGGGTACCAAAGTAAAAA
* * *
34473913 AAGGAGTACCAAAGTACAAACAGGGGTACCAAAGTACAAG
1 AAGGAGTACCGAAGTACAAACAGGGGTACCAAAGTAAAAA
*
34473953 CAGGAGTACCGAAGTACAAACAG
1 AAGGAGTACCGAAGTACAAACAG
34473976 AAGTACCTGT
Statistics
Matches: 54, Mismatches: 8, Indels: 1
0.86 0.13 0.02
Matches are distributed among these distances:
39 4 0.07
40 50 0.93
ACGTcount: A:0.49, C:0.16, G:0.25, T:0.10
Consensus pattern (40 bp):
AAGGAGTACCGAAGTACAAACAGGGGTACCAAAGTAAAAA
Found at i:34474595 original size:23 final size:24
Alignment explanation
Indices: 34474564--34474611 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
34474554 GTTGAGGGAC
*
34474564 TTTTCATGATGTTT-ATAAATTAT
1 TTTTCATGATATTTGATAAATTAT
* *
34474587 TTTTGATGATATTTGATAGATTAT
1 TTTTCATGATATTTGATAAATTAT
34474611 T
1 T
34474612 AATCTTGGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.29, C:0.02, G:0.12, T:0.56
Consensus pattern (24 bp):
TTTTCATGATATTTGATAAATTAT
Found at i:34476035 original size:12 final size:12
Alignment explanation
Indices: 34476018--34476047 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
34476008 TCAATGAGTT
*
34476018 ACACGGCCTAGC
1 ACACGGCCTAAC
34476030 ACACGGCCTAAC
1 ACACGGCCTAAC
34476042 ACACGG
1 ACACGG
34476048 GCGTGTGTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.30, C:0.40, G:0.23, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAAC
Found at i:34480853 original size:27 final size:26
Alignment explanation
Indices: 34480822--34480880 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
34480812 AAGGTTGTTT
*
34480822 AATGACCGAAATACCCCTATAAGGTAA
1 AATGACCGAAATACCCCTAGAAGGT-A
* * *
34480849 AATGACCGTAATGCCCCTAGAGGGTA
1 AATGACCGAAATACCCCTAGAAGGTA
34480875 AATGAC
1 AATGAC
34480881 TATTTTGCCC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (26 bp):
AATGACCGAAATACCCCTAGAAGGTA
Found at i:34482399 original size:20 final size:20
Alignment explanation
Indices: 34482373--34482424 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
34482363 GGCGTGTTAC
*
34482373 AGTACCGAAGTCCAAACAGG
1 AGTACCGAAGTACAAACAGG
*
34482393 GGTACCGAAGTACAAACAGG
1 AGTACCGAAGTACAAACAGG
34482413 AGTACCGAAGTA
1 AGTACCGAAGTA
34482425 AATTCCTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.40, C:0.21, G:0.27, T:0.12
Consensus pattern (20 bp):
AGTACCGAAGTACAAACAGG
Found at i:34489611 original size:20 final size:20
Alignment explanation
Indices: 34489583--34489732 Score: 151
Period size: 20 Copynumber: 7.5 Consensus size: 20
34489573 TATAGAGGCA
34489583 CAAATGTACAAACAGGGGTAC
1 CAAA-GTACAAACAGGGGTAC
* *
34489604 AAAAGTACAAATAGGGGTAC
1 CAAAGTACAAACAGGGGTAC
** **
34489624 TGAAGTACAAGTA-GGGTAC
1 CAAAGTACAAACAGGGGTAC
*
34489643 CAAAGTACAAACGGGGGTAC
1 CAAAGTACAAACAGGGGTAC
** *
34489663 TGAAGTACAAACAGTGGTAC
1 CAAAGTACAAACAGGGGTAC
* *
34489683 CGAAGTACAAATA-GGGTAC
1 CAAAGTACAAACAGGGGTAC
*
34489702 GAAAGTACAAACAGGGGTAC
1 CAAAGTACAAACAGGGGTAC
*
34489722 CAGAGTACAAA
1 CAAAGTACAAA
34489733 TAGGAATACC
Statistics
Matches: 105, Mismatches: 22, Indels: 5
0.80 0.17 0.04
Matches are distributed among these distances:
19 29 0.28
20 73 0.70
21 3 0.03
ACGTcount: A:0.43, C:0.15, G:0.27, T:0.15
Consensus pattern (20 bp):
CAAAGTACAAACAGGGGTAC
Done.